Query 039728
Match_columns 263
No_of_seqs 153 out of 1579
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 12:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-42 2.8E-47 280.9 13.6 250 5-263 16-266 (287)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9.7E-41 2.1E-45 298.6 22.1 245 9-263 180-427 (889)
3 PLN03210 Resistant to P. syrin 100.0 4.5E-32 9.8E-37 253.4 23.4 235 4-263 203-453 (1153)
4 PRK04841 transcriptional regul 99.8 1.1E-17 2.4E-22 155.2 20.5 237 2-260 26-279 (903)
5 COG2909 MalT ATP-dependent tra 99.7 2.7E-16 5.8E-21 136.8 15.4 238 2-260 31-285 (894)
6 PF05729 NACHT: NACHT domain 99.6 1.1E-14 2.4E-19 108.0 10.3 148 9-166 1-164 (166)
7 TIGR03015 pepcterm_ATPase puta 99.6 1.3E-12 2.7E-17 104.8 19.6 187 7-203 42-242 (269)
8 PRK00411 cdc6 cell division co 99.5 5.4E-12 1.2E-16 106.7 21.8 232 6-257 53-307 (394)
9 TIGR02928 orc1/cdc6 family rep 99.5 1.6E-11 3.4E-16 102.8 22.3 236 6-256 38-298 (365)
10 PF01637 Arch_ATPase: Archaeal 99.4 3.4E-12 7.3E-17 100.0 11.7 184 7-199 19-234 (234)
11 COG2256 MGS1 ATPase related to 99.4 4.5E-11 9.8E-16 96.7 17.9 213 5-248 45-267 (436)
12 PF13173 AAA_14: AAA domain 99.3 1.4E-11 3.1E-16 87.2 7.9 124 7-157 1-127 (128)
13 COG3903 Predicted ATPase [Gene 99.3 7E-12 1.5E-16 101.7 6.4 236 6-262 12-255 (414)
14 TIGR00635 ruvB Holliday juncti 99.3 5.9E-11 1.3E-15 96.9 11.7 76 122-203 130-205 (305)
15 PRK00080 ruvB Holliday junctio 99.3 1.5E-10 3.2E-15 95.3 13.8 75 123-203 152-226 (328)
16 PRK06893 DNA replication initi 99.3 5.5E-11 1.2E-15 92.7 10.6 155 7-203 38-207 (229)
17 COG3899 Predicted ATPase [Gene 99.2 3.5E-10 7.6E-15 103.1 15.7 159 93-262 153-324 (849)
18 PF13401 AAA_22: AAA domain; P 99.2 3.1E-11 6.8E-16 85.8 6.8 115 6-131 2-125 (131)
19 TIGR03420 DnaA_homol_Hda DnaA 99.2 2.3E-10 5.1E-15 89.3 11.3 159 6-203 36-205 (226)
20 PF14516 AAA_35: AAA-like doma 99.2 8.2E-09 1.8E-13 84.9 20.0 193 8-211 31-251 (331)
21 TIGR00678 holB DNA polymerase 99.2 1.1E-09 2.4E-14 82.9 12.8 89 93-194 95-186 (188)
22 PTZ00112 origin recognition co 99.1 8.9E-09 1.9E-13 91.7 19.5 157 5-167 778-951 (1164)
23 PRK07003 DNA polymerase III su 99.1 5.8E-09 1.3E-13 91.9 17.2 104 93-203 118-225 (830)
24 PRK13342 recombination factor 99.1 8.9E-09 1.9E-13 87.3 17.8 161 7-203 35-200 (413)
25 PRK14961 DNA polymerase III su 99.1 4.4E-09 9.6E-14 87.6 14.8 100 93-199 118-220 (363)
26 PRK08084 DNA replication initi 99.1 1.6E-09 3.4E-14 84.8 11.3 155 7-203 44-213 (235)
27 PRK12402 replication factor C 99.1 1.8E-08 3.8E-13 83.5 18.2 102 94-202 125-229 (337)
28 KOG2028 ATPase related to the 99.1 1.9E-09 4E-14 86.4 11.6 163 5-194 159-331 (554)
29 PRK08727 hypothetical protein; 99.1 2.1E-09 4.5E-14 84.0 11.8 155 8-201 41-206 (233)
30 PRK14949 DNA polymerase III su 99.1 5.1E-09 1.1E-13 93.9 15.2 101 93-200 118-221 (944)
31 COG1474 CDC6 Cdc6-related prot 99.1 7.6E-08 1.6E-12 79.7 21.0 174 10-192 44-230 (366)
32 PRK14960 DNA polymerase III su 99.0 2.1E-08 4.6E-13 87.4 17.5 100 93-199 117-219 (702)
33 PRK09087 hypothetical protein; 99.0 7E-09 1.5E-13 80.5 12.7 145 8-203 44-199 (226)
34 PRK07940 DNA polymerase III su 99.0 1.3E-08 2.7E-13 85.1 14.9 92 93-196 116-210 (394)
35 PRK14963 DNA polymerase III su 99.0 2.7E-08 5.8E-13 85.9 17.0 102 93-201 115-219 (504)
36 PF05496 RuvB_N: Holliday junc 99.0 5.9E-09 1.3E-13 79.0 11.3 160 5-205 47-227 (233)
37 PRK14957 DNA polymerase III su 99.0 1.4E-08 3E-13 87.9 14.8 100 93-199 118-221 (546)
38 PRK12323 DNA polymerase III su 99.0 9.6E-09 2.1E-13 89.4 13.8 100 93-199 123-225 (700)
39 PRK08903 DnaA regulatory inact 99.0 2.6E-09 5.6E-14 83.4 9.3 155 6-203 40-203 (227)
40 PRK14956 DNA polymerase III su 99.0 1.5E-08 3.3E-13 85.7 14.0 101 93-200 120-223 (484)
41 PRK00440 rfc replication facto 99.0 6.1E-08 1.3E-12 79.7 17.5 164 7-201 37-205 (319)
42 PRK07994 DNA polymerase III su 99.0 1.5E-08 3.2E-13 89.1 14.3 101 93-200 118-221 (647)
43 PLN03025 replication factor C 99.0 1.7E-08 3.6E-13 82.8 13.9 164 7-199 33-200 (319)
44 PF00308 Bac_DnaA: Bacterial d 99.0 1E-08 2.3E-13 79.2 11.7 166 7-203 33-212 (219)
45 PRK14087 dnaA chromosomal repl 99.0 7.3E-08 1.6E-12 82.3 17.9 211 8-242 141-370 (450)
46 PRK09112 DNA polymerase III su 99.0 1.5E-08 3.1E-13 83.6 13.2 99 93-200 140-241 (351)
47 PRK05564 DNA polymerase III su 99.0 3.2E-08 7E-13 81.0 15.0 158 5-197 23-188 (313)
48 PRK06645 DNA polymerase III su 99.0 3.2E-08 6.8E-13 85.1 15.3 100 93-199 127-229 (507)
49 PRK05642 DNA replication initi 99.0 6.7E-09 1.4E-13 81.2 10.1 157 8-203 45-212 (234)
50 PRK04195 replication factor C 98.9 2.8E-08 6E-13 86.0 14.2 163 8-204 39-207 (482)
51 PRK14964 DNA polymerase III su 98.9 3.6E-08 7.8E-13 84.2 14.5 101 93-200 115-218 (491)
52 PRK07471 DNA polymerase III su 98.9 4.7E-08 1E-12 81.1 14.7 97 93-200 140-239 (365)
53 PRK08691 DNA polymerase III su 98.9 4.7E-08 1E-12 86.0 15.1 101 93-200 118-221 (709)
54 TIGR00362 DnaA chromosomal rep 98.9 1.5E-07 3.2E-12 79.9 17.9 204 8-241 136-358 (405)
55 PRK05707 DNA polymerase III su 98.9 4.5E-08 9.8E-13 80.0 14.0 93 94-197 106-201 (328)
56 PRK14958 DNA polymerase III su 98.9 2.7E-08 5.9E-13 86.0 13.3 101 93-200 118-221 (509)
57 PRK13341 recombination factor 98.9 2E-07 4.3E-12 83.6 18.5 160 6-201 50-219 (725)
58 PRK14088 dnaA chromosomal repl 98.9 1.5E-07 3.3E-12 80.3 17.0 184 8-220 130-332 (440)
59 PRK14951 DNA polymerase III su 98.9 4.4E-08 9.6E-13 85.9 14.0 99 94-199 124-225 (618)
60 PRK00149 dnaA chromosomal repl 98.9 5.5E-08 1.2E-12 83.6 14.4 206 7-242 147-371 (450)
61 PRK14962 DNA polymerase III su 98.9 8.3E-08 1.8E-12 82.2 15.1 104 93-203 116-223 (472)
62 TIGR02397 dnaX_nterm DNA polym 98.9 9.6E-08 2.1E-12 79.7 15.2 102 94-202 117-221 (355)
63 PRK07764 DNA polymerase III su 98.9 6.5E-08 1.4E-12 87.8 14.6 100 93-199 119-221 (824)
64 PRK14969 DNA polymerase III su 98.9 9.8E-08 2.1E-12 83.1 15.0 97 93-196 118-217 (527)
65 PRK14952 DNA polymerase III su 98.9 1.4E-07 3E-12 82.6 15.8 100 93-199 117-220 (584)
66 cd00009 AAA The AAA+ (ATPases 98.9 3E-08 6.4E-13 71.6 9.9 106 7-133 18-131 (151)
67 PRK12422 chromosomal replicati 98.8 5.1E-07 1.1E-11 77.0 18.3 205 8-242 141-366 (445)
68 PF05621 TniB: Bacterial TniB 98.8 3.7E-07 7.9E-12 72.5 15.5 184 6-198 59-260 (302)
69 PRK05896 DNA polymerase III su 98.8 1.3E-07 2.9E-12 82.2 13.8 99 95-200 120-221 (605)
70 PRK14086 dnaA chromosomal repl 98.8 5.4E-07 1.2E-11 78.6 17.3 182 9-220 315-515 (617)
71 PRK14955 DNA polymerase III su 98.8 1.2E-07 2.6E-12 80.0 12.8 102 93-201 126-230 (397)
72 PRK14970 DNA polymerase III su 98.8 2.3E-07 5E-12 77.7 14.4 165 6-201 37-211 (367)
73 TIGR02880 cbbX_cfxQ probable R 98.8 4.7E-07 1E-11 72.9 15.5 135 9-167 59-210 (284)
74 PRK09111 DNA polymerase III su 98.8 2E-07 4.3E-12 82.0 14.4 103 93-202 131-236 (598)
75 TIGR01242 26Sp45 26S proteasom 98.8 2.5E-08 5.4E-13 83.3 8.4 154 7-193 155-328 (364)
76 TIGR02881 spore_V_K stage V sp 98.8 2.1E-07 4.6E-12 74.1 13.1 139 5-167 39-193 (261)
77 COG3267 ExeA Type II secretory 98.8 5.5E-07 1.2E-11 69.2 14.3 188 5-202 48-248 (269)
78 PRK07133 DNA polymerase III su 98.8 3.2E-07 7E-12 81.4 14.7 101 93-200 117-220 (725)
79 PRK14950 DNA polymerase III su 98.8 1E-06 2.3E-11 77.9 18.0 104 93-203 119-225 (585)
80 PRK06620 hypothetical protein; 98.8 1.2E-07 2.5E-12 73.1 10.6 143 9-203 45-193 (214)
81 PRK14959 DNA polymerase III su 98.8 4E-07 8.8E-12 79.6 15.0 104 93-203 118-225 (624)
82 TIGR03689 pup_AAA proteasome A 98.8 2.4E-07 5.3E-12 79.5 13.4 144 7-167 215-380 (512)
83 cd01128 rho_factor Transcripti 98.8 4E-08 8.8E-13 77.0 8.0 97 7-105 15-114 (249)
84 PF00004 AAA: ATPase family as 98.8 5.2E-08 1.1E-12 69.2 8.0 21 11-31 1-21 (132)
85 CHL00181 cbbX CbbX; Provisiona 98.8 7E-07 1.5E-11 71.9 15.3 137 8-168 59-212 (287)
86 PRK14953 DNA polymerase III su 98.7 5.2E-07 1.1E-11 77.7 15.1 103 93-202 118-223 (486)
87 KOG2543 Origin recognition com 98.7 6.7E-07 1.5E-11 72.4 14.5 187 9-201 31-228 (438)
88 PRK08769 DNA polymerase III su 98.7 4.6E-07 9.9E-12 73.6 13.5 95 93-200 112-209 (319)
89 KOG0989 Replication factor C, 98.7 5.3E-07 1.1E-11 71.0 12.9 175 6-204 55-235 (346)
90 PRK07993 DNA polymerase III su 98.7 7.2E-07 1.6E-11 73.2 14.3 91 93-195 107-200 (334)
91 PRK03992 proteasome-activating 98.7 1.6E-07 3.5E-12 79.0 10.6 154 6-192 163-336 (389)
92 PRK08451 DNA polymerase III su 98.7 6.4E-07 1.4E-11 77.4 14.3 101 93-200 116-219 (535)
93 COG0593 DnaA ATPase involved i 98.7 1.5E-06 3.2E-11 72.3 15.7 202 7-241 112-333 (408)
94 PRK06871 DNA polymerase III su 98.7 1.5E-06 3.2E-11 70.8 14.6 90 93-194 106-198 (325)
95 PRK14965 DNA polymerase III su 98.6 1.1E-06 2.3E-11 77.6 14.4 100 93-199 118-221 (576)
96 PRK06647 DNA polymerase III su 98.6 5.3E-06 1.2E-10 72.7 18.5 102 93-201 118-222 (563)
97 PRK06305 DNA polymerase III su 98.6 1.3E-06 2.7E-11 74.8 14.3 100 93-199 120-222 (451)
98 PTZ00202 tuzin; Provisional 98.6 6E-06 1.3E-10 68.9 17.5 145 7-165 285-434 (550)
99 PTZ00454 26S protease regulato 98.6 2.5E-07 5.4E-12 77.7 9.6 153 7-192 178-350 (398)
100 PRK14948 DNA polymerase III su 98.6 1.6E-06 3.4E-11 76.9 14.9 103 93-202 120-225 (620)
101 CHL00176 ftsH cell division pr 98.6 9.4E-07 2E-11 78.4 13.3 181 7-220 215-423 (638)
102 PF13191 AAA_16: AAA ATPase do 98.6 2.9E-07 6.4E-12 69.3 8.9 28 4-31 20-47 (185)
103 PRK14954 DNA polymerase III su 98.6 1.8E-06 3.8E-11 76.3 14.8 98 93-197 126-226 (620)
104 KOG0733 Nuclear AAA ATPase (VC 98.6 3.9E-07 8.5E-12 77.9 10.2 153 7-192 222-395 (802)
105 smart00382 AAA ATPases associa 98.6 4.2E-07 9.1E-12 65.0 9.2 39 8-48 2-40 (148)
106 PRK09376 rho transcription ter 98.6 1.1E-07 2.3E-12 78.2 6.4 95 8-104 169-266 (416)
107 PLN00020 ribulose bisphosphate 98.6 1.4E-06 3.1E-11 71.0 12.6 26 6-31 146-171 (413)
108 PHA02544 44 clamp loader, smal 98.6 4.1E-06 8.9E-11 68.8 15.7 125 7-162 42-170 (316)
109 PRK14971 DNA polymerase III su 98.6 2.2E-06 4.8E-11 75.9 14.9 99 94-199 121-222 (614)
110 PRK05563 DNA polymerase III su 98.6 3E-06 6.4E-11 74.5 15.0 99 93-198 118-219 (559)
111 PTZ00361 26 proteosome regulat 98.6 1.2E-06 2.7E-11 74.1 11.8 154 7-193 216-389 (438)
112 CHL00195 ycf46 Ycf46; Provisio 98.5 2.8E-06 6.1E-11 73.1 14.0 156 7-193 258-429 (489)
113 PRK07399 DNA polymerase III su 98.5 2.3E-05 4.9E-10 64.0 18.3 98 93-201 123-223 (314)
114 TIGR00767 rho transcription te 98.5 4.4E-07 9.6E-12 75.0 8.3 97 7-105 167-266 (415)
115 TIGR01241 FtsH_fam ATP-depende 98.5 1.1E-06 2.3E-11 76.6 11.2 181 7-220 87-295 (495)
116 COG1373 Predicted ATPase (AAA+ 98.5 7.3E-06 1.6E-10 69.1 15.7 120 10-159 39-161 (398)
117 PRK08058 DNA polymerase III su 98.5 2.5E-06 5.4E-11 70.2 12.6 70 93-164 109-181 (329)
118 PRK06090 DNA polymerase III su 98.5 1.4E-05 2.9E-10 65.1 16.4 91 94-199 108-201 (319)
119 KOG0741 AAA+-type ATPase [Post 98.5 3.9E-06 8.5E-11 70.8 13.3 132 4-165 534-686 (744)
120 KOG0733 Nuclear AAA ATPase (VC 98.5 3.7E-06 8.1E-11 72.1 12.8 133 8-167 545-694 (802)
121 KOG2227 Pre-initiation complex 98.5 9.6E-06 2.1E-10 67.6 14.8 156 6-168 173-341 (529)
122 TIGR01243 CDC48 AAA family ATP 98.5 1.6E-06 3.4E-11 79.1 11.3 154 7-193 486-657 (733)
123 TIGR02640 gas_vesic_GvpN gas v 98.5 7.3E-06 1.6E-10 65.3 13.9 40 9-53 22-61 (262)
124 KOG0744 AAA+-type ATPase [Post 98.5 7.9E-07 1.7E-11 70.5 8.0 41 7-47 176-218 (423)
125 PRK08181 transposase; Validate 98.5 5.7E-07 1.2E-11 71.4 7.1 36 8-45 106-141 (269)
126 PRK06964 DNA polymerase III su 98.5 9.3E-06 2E-10 66.7 14.3 90 93-197 131-223 (342)
127 PF05673 DUF815: Protein of un 98.5 9.4E-06 2E-10 62.6 13.3 98 7-136 51-155 (249)
128 PRK08116 hypothetical protein; 98.4 1.2E-06 2.6E-11 69.9 8.6 36 8-45 114-149 (268)
129 KOG0730 AAA+-type ATPase [Post 98.4 1.2E-06 2.5E-11 75.7 7.9 155 6-193 466-637 (693)
130 COG0466 Lon ATP-dependent Lon 98.4 1.5E-06 3.3E-11 75.8 8.5 143 5-166 347-509 (782)
131 PF10443 RNA12: RNA12 protein; 98.4 4E-05 8.7E-10 63.8 16.2 124 95-218 149-297 (431)
132 COG1222 RPT1 ATP-dependent 26S 98.4 7.9E-06 1.7E-10 65.9 11.5 154 6-193 183-357 (406)
133 PF04665 Pox_A32: Poxvirus A32 98.4 1.1E-05 2.5E-10 62.5 11.7 35 10-46 15-49 (241)
134 PRK06526 transposase; Provisio 98.3 1.3E-06 2.9E-11 68.9 6.5 25 7-31 97-121 (254)
135 COG1223 Predicted ATPase (AAA+ 98.3 8.1E-06 1.7E-10 63.1 10.3 153 7-193 150-319 (368)
136 KOG0735 AAA+-type ATPase [Post 98.3 2.2E-05 4.7E-10 68.7 14.0 166 7-202 430-619 (952)
137 PRK09183 transposase/IS protei 98.3 2.6E-06 5.7E-11 67.6 8.0 24 8-31 102-125 (259)
138 TIGR02903 spore_lon_C ATP-depe 98.3 8.7E-06 1.9E-10 72.4 11.6 53 145-202 346-398 (615)
139 PRK08699 DNA polymerase III su 98.3 1.8E-05 3.9E-10 64.8 12.2 69 94-164 113-184 (325)
140 KOG0735 AAA+-type ATPase [Post 98.3 2.3E-05 5E-10 68.6 13.1 154 8-194 701-871 (952)
141 PF13177 DNA_pol3_delta2: DNA 98.3 1.2E-05 2.5E-10 59.2 9.6 58 94-153 102-162 (162)
142 PRK06921 hypothetical protein; 98.2 9.1E-06 2E-10 64.7 9.5 38 7-46 116-154 (266)
143 TIGR01243 CDC48 AAA family ATP 98.2 5.9E-06 1.3E-10 75.4 9.5 154 7-193 211-381 (733)
144 COG2255 RuvB Holliday junction 98.2 1.3E-05 2.9E-10 62.6 9.8 72 127-204 157-228 (332)
145 KOG2035 Replication factor C, 98.2 1E-05 2.2E-10 63.0 8.9 144 94-244 126-282 (351)
146 PF07693 KAP_NTPase: KAP famil 98.2 6.9E-05 1.5E-09 61.8 14.7 60 6-65 18-82 (325)
147 cd01120 RecA-like_NTPases RecA 98.2 7.4E-06 1.6E-10 60.2 8.0 39 10-50 1-39 (165)
148 PF01695 IstB_IS21: IstB-like 98.2 2.1E-06 4.6E-11 64.1 4.9 37 8-46 47-83 (178)
149 PRK12377 putative replication 98.2 6.4E-06 1.4E-10 64.7 7.6 38 8-47 101-138 (248)
150 COG0464 SpoVK ATPases of the A 98.2 1.6E-05 3.5E-10 69.4 10.9 155 6-191 274-445 (494)
151 TIGR00763 lon ATP-dependent pr 98.2 8.4E-06 1.8E-10 74.7 9.5 139 6-165 345-505 (775)
152 PRK04132 replication factor C 98.2 6.2E-05 1.3E-09 68.6 14.4 160 13-202 569-734 (846)
153 PRK10536 hypothetical protein; 98.2 2.3E-05 4.9E-10 61.2 10.1 42 90-132 169-213 (262)
154 TIGR03345 VI_ClpV1 type VI sec 98.2 1.1E-05 2.3E-10 74.3 9.5 99 93-193 279-390 (852)
155 TIGR02639 ClpA ATP-dependent C 98.2 9.9E-06 2.1E-10 73.8 9.2 136 8-165 203-358 (731)
156 cd00561 CobA_CobO_BtuR ATP:cor 98.2 1.2E-05 2.6E-10 58.4 7.8 122 9-133 3-139 (159)
157 PRK12608 transcription termina 98.1 1.5E-05 3.2E-10 65.7 8.5 92 9-104 134-230 (380)
158 TIGR00602 rad24 checkpoint pro 98.1 2.3E-05 5E-10 69.4 10.1 25 7-31 109-133 (637)
159 PRK08939 primosomal protein Dn 98.1 1.3E-05 2.8E-10 65.1 7.8 100 7-131 155-260 (306)
160 PRK10733 hflB ATP-dependent me 98.1 2E-05 4.2E-10 70.7 9.5 133 9-168 186-338 (644)
161 PRK07952 DNA replication prote 98.1 2.2E-05 4.9E-10 61.5 8.6 36 8-45 99-134 (244)
162 TIGR03346 chaperone_ClpB ATP-d 98.1 0.00013 2.9E-09 67.6 15.0 39 8-48 595-633 (852)
163 COG2812 DnaX DNA polymerase II 98.1 1.6E-05 3.4E-10 68.2 8.2 95 93-194 118-215 (515)
164 TIGR03345 VI_ClpV1 type VI sec 98.1 0.00024 5.3E-09 65.7 16.4 25 7-31 595-619 (852)
165 COG0470 HolB ATPase involved i 98.1 4.1E-05 8.8E-10 63.1 10.5 57 93-151 108-167 (325)
166 PRK04296 thymidine kinase; Pro 98.1 8.4E-06 1.8E-10 61.7 5.8 113 9-133 3-117 (190)
167 TIGR02639 ClpA ATP-dependent C 98.1 0.00013 2.8E-09 66.7 14.4 24 8-31 484-507 (731)
168 KOG1514 Origin recognition com 98.1 0.00021 4.6E-09 62.6 14.4 153 6-168 420-592 (767)
169 COG1126 GlnQ ABC-type polar am 98.0 5.8E-05 1.3E-09 56.9 9.5 56 85-140 145-204 (240)
170 PRK11331 5-methylcytosine-spec 98.0 1.4E-05 3.1E-10 67.3 7.1 49 8-56 194-242 (459)
171 PRK07132 DNA polymerase III su 98.0 0.00025 5.4E-09 57.4 13.9 135 5-164 15-161 (299)
172 cd03214 ABC_Iron-Siderophores_ 98.0 6.6E-05 1.4E-09 56.3 9.9 123 7-135 24-161 (180)
173 KOG2004 Mitochondrial ATP-depe 98.0 2E-05 4.3E-10 69.0 7.8 145 2-166 432-597 (906)
174 cd01393 recA_like RecA is a b 98.0 8.9E-05 1.9E-09 57.8 11.0 99 5-104 16-124 (226)
175 cd03238 ABC_UvrA The excision 98.0 8.2E-05 1.8E-09 55.4 10.0 23 7-29 20-42 (176)
176 TIGR03346 chaperone_ClpB ATP-d 98.0 3.1E-05 6.7E-10 71.7 9.4 134 7-164 193-348 (852)
177 KOG2228 Origin recognition com 98.0 9.2E-05 2E-09 59.4 10.7 156 7-167 48-221 (408)
178 KOG1969 DNA replication checkp 98.0 1.9E-05 4.1E-10 69.2 7.4 75 4-105 322-398 (877)
179 CHL00095 clpC Clp protease ATP 98.0 2.3E-05 4.9E-10 72.4 8.3 136 8-164 200-353 (821)
180 COG2884 FtsE Predicted ATPase 98.0 0.00014 3E-09 53.7 10.7 52 87-139 148-204 (223)
181 TIGR00708 cobA cob(I)alamin ad 98.0 5.7E-05 1.2E-09 55.6 8.6 124 7-133 4-141 (173)
182 cd01131 PilT Pilus retraction 98.0 2E-05 4.3E-10 60.1 6.6 111 9-135 2-112 (198)
183 PF10236 DAP3: Mitochondrial r 98.0 0.00017 3.7E-09 58.8 12.3 49 146-196 258-306 (309)
184 PRK10787 DNA-binding ATP-depen 98.0 6.6E-05 1.4E-09 68.6 10.7 139 7-166 348-507 (784)
185 KOG0743 AAA+-type ATPase [Post 98.0 0.00034 7.3E-09 58.4 13.9 169 9-220 236-431 (457)
186 PRK10865 protein disaggregatio 98.0 5.7E-05 1.2E-09 69.8 10.4 22 9-30 599-620 (857)
187 KOG0991 Replication factor C, 98.0 2.9E-05 6.3E-10 59.1 6.9 45 4-48 44-88 (333)
188 PRK06835 DNA replication prote 98.0 2.1E-05 4.6E-10 64.4 6.7 37 9-47 184-220 (329)
189 KOG0739 AAA+-type ATPase [Post 97.9 0.00011 2.3E-09 58.1 9.7 153 7-193 165-335 (439)
190 TIGR02237 recomb_radB DNA repa 97.9 5.8E-05 1.3E-09 58.1 8.4 41 6-48 10-50 (209)
191 cd03223 ABCD_peroxisomal_ALDP 97.9 0.0002 4.2E-09 53.0 10.8 25 7-31 26-50 (166)
192 PF02456 Adeno_IVa2: Adenoviru 97.9 0.0001 2.2E-09 58.4 9.5 182 5-204 84-299 (369)
193 cd03247 ABCC_cytochrome_bd The 97.9 0.00015 3.3E-09 54.2 10.2 25 7-31 27-51 (178)
194 COG1484 DnaC DNA replication p 97.9 3.2E-05 7E-10 61.1 6.7 39 7-47 104-142 (254)
195 PRK10865 protein disaggregatio 97.9 5.1E-05 1.1E-09 70.2 8.7 25 7-31 198-222 (857)
196 cd01394 radB RadB. The archaea 97.9 7E-05 1.5E-09 58.0 8.2 42 6-49 17-58 (218)
197 PRK09361 radB DNA repair and r 97.9 7.6E-05 1.7E-09 58.1 8.4 40 6-47 21-60 (225)
198 KOG0736 Peroxisome assembly fa 97.9 0.00027 5.9E-09 62.7 12.3 71 8-105 705-775 (953)
199 PRK08118 topology modulation p 97.9 2E-05 4.4E-10 58.3 4.8 35 9-43 2-37 (167)
200 PTZ00494 tuzin-like protein; P 97.9 0.001 2.2E-08 55.9 14.9 150 5-165 392-544 (664)
201 PRK06067 flagellar accessory p 97.9 0.0001 2.2E-09 57.8 9.0 94 6-104 23-130 (234)
202 PF13207 AAA_17: AAA domain; P 97.9 8.5E-06 1.8E-10 56.9 2.6 22 10-31 1-22 (121)
203 cd01123 Rad51_DMC1_radA Rad51_ 97.9 0.00011 2.5E-09 57.5 9.0 47 6-52 17-67 (235)
204 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 0.00034 7.4E-09 50.4 10.7 105 7-137 25-132 (144)
205 COG4608 AppF ABC-type oligopep 97.9 0.00014 3.1E-09 56.9 9.0 128 7-140 38-178 (268)
206 TIGR02858 spore_III_AA stage I 97.8 0.00026 5.5E-09 56.5 10.5 117 8-134 111-231 (270)
207 cd03216 ABC_Carb_Monos_I This 97.8 9.8E-05 2.1E-09 54.5 7.7 116 7-137 25-147 (163)
208 cd03228 ABCC_MRP_Like The MRP 97.8 0.00028 6.1E-09 52.5 10.3 125 7-136 27-159 (171)
209 TIGR02012 tigrfam_recA protein 97.8 3.1E-05 6.8E-10 62.9 5.4 92 4-104 51-143 (321)
210 PRK05986 cob(I)alamin adenolsy 97.8 0.0001 2.2E-09 55.1 7.6 126 7-134 21-160 (191)
211 cd00983 recA RecA is a bacter 97.8 3.5E-05 7.6E-10 62.7 5.5 91 5-104 52-143 (325)
212 PRK09354 recA recombinase A; P 97.8 4.2E-05 9.2E-10 62.7 5.9 91 5-104 57-148 (349)
213 COG0542 clpA ATP-binding subun 97.8 0.00011 2.3E-09 66.0 8.7 101 4-119 517-620 (786)
214 PRK11889 flhF flagellar biosyn 97.8 0.00027 5.9E-09 58.7 10.5 39 7-47 240-278 (436)
215 cd00544 CobU Adenosylcobinamid 97.8 5.4E-05 1.2E-09 56.0 5.9 36 10-50 1-36 (169)
216 PRK05973 replicative DNA helic 97.8 0.00017 3.8E-09 56.1 8.8 44 4-49 60-103 (237)
217 TIGR03877 thermo_KaiC_1 KaiC d 97.8 0.00023 5E-09 55.9 9.6 41 6-48 19-59 (237)
218 TIGR03878 thermo_KaiC_2 KaiC d 97.8 0.00014 2.9E-09 58.0 8.3 42 6-49 34-75 (259)
219 cd03246 ABCC_Protease_Secretio 97.8 0.00024 5.3E-09 52.9 9.0 24 7-30 27-50 (173)
220 PRK14722 flhF flagellar biosyn 97.8 0.00031 6.7E-09 58.4 10.2 58 6-63 135-193 (374)
221 PRK07261 topology modulation p 97.8 8.4E-05 1.8E-09 55.3 6.3 22 10-31 2-23 (171)
222 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00042 9.2E-09 51.7 10.0 25 6-30 23-47 (177)
223 KOG0734 AAA+-type ATPase conta 97.8 0.00017 3.7E-09 61.4 8.6 25 8-32 337-361 (752)
224 cd03230 ABC_DR_subfamily_A Thi 97.8 0.0003 6.5E-09 52.4 9.2 125 7-137 25-160 (173)
225 CHL00095 clpC Clp protease ATP 97.7 7.8E-05 1.7E-09 68.9 7.2 22 9-30 540-561 (821)
226 COG1117 PstB ABC-type phosphat 97.7 0.00041 8.9E-09 52.4 9.4 50 89-141 162-217 (253)
227 COG1136 SalX ABC-type antimicr 97.7 0.00076 1.7E-08 51.9 11.0 24 7-30 30-53 (226)
228 cd03229 ABC_Class3 This class 97.7 0.00013 2.8E-09 54.7 6.8 24 7-30 25-48 (178)
229 KOG0736 Peroxisome assembly fa 97.7 0.00044 9.6E-09 61.4 10.8 153 7-193 430-598 (953)
230 PRK14974 cell division protein 97.7 0.00041 8.9E-09 57.0 10.2 26 6-31 138-163 (336)
231 PRK11034 clpA ATP-dependent Cl 97.7 9.7E-05 2.1E-09 67.1 7.1 135 9-164 208-361 (758)
232 cd03283 ABC_MutS-like MutS-lik 97.7 0.00014 3E-09 55.4 7.0 22 9-30 26-47 (199)
233 PRK08533 flagellar accessory p 97.7 0.00034 7.3E-09 54.6 9.3 50 6-59 22-71 (230)
234 TIGR02902 spore_lonB ATP-depen 97.7 0.0001 2.2E-09 64.6 7.0 23 8-30 86-108 (531)
235 PRK05800 cobU adenosylcobinami 97.7 0.0001 2.2E-09 54.7 5.9 21 10-30 3-23 (170)
236 COG2607 Predicted ATPase (AAA+ 97.7 0.00028 6E-09 54.1 8.1 79 8-118 85-166 (287)
237 PF07724 AAA_2: AAA domain (Cd 97.7 2.7E-05 5.8E-10 57.8 2.7 42 8-51 3-45 (171)
238 COG5635 Predicted NTPase (NACH 97.7 7.9E-05 1.7E-09 68.9 6.3 195 10-220 224-447 (824)
239 KOG0727 26S proteasome regulat 97.7 0.00031 6.7E-09 54.3 8.4 26 6-31 187-212 (408)
240 cd03285 ABC_MSH2_euk MutS2 hom 97.7 5.9E-05 1.3E-09 58.5 4.6 25 6-30 28-52 (222)
241 PRK00771 signal recognition pa 97.7 0.00054 1.2E-08 58.3 10.6 26 6-31 93-118 (437)
242 PF14532 Sigma54_activ_2: Sigm 97.7 7.4E-05 1.6E-09 53.5 4.6 24 7-30 20-43 (138)
243 COG1120 FepC ABC-type cobalami 97.7 0.00085 1.8E-08 52.7 10.6 24 7-30 27-50 (258)
244 KOG0731 AAA+-type ATPase conta 97.7 0.00097 2.1E-08 59.7 12.1 156 8-195 344-520 (774)
245 PRK04328 hypothetical protein; 97.7 0.00019 4.1E-09 56.8 7.1 41 6-48 21-61 (249)
246 PF06745 KaiC: KaiC; InterPro 97.7 4E-05 8.6E-10 59.8 3.3 94 6-104 17-125 (226)
247 PF12775 AAA_7: P-loop contain 97.6 3.4E-05 7.4E-10 61.7 2.9 25 7-31 32-56 (272)
248 COG4088 Predicted nucleotide k 97.6 0.00038 8.1E-09 52.2 8.0 23 9-31 2-24 (261)
249 cd03215 ABC_Carb_Monos_II This 97.6 0.00055 1.2E-08 51.4 9.3 25 7-31 25-49 (182)
250 cd03115 SRP The signal recogni 97.6 0.00096 2.1E-08 49.7 10.4 37 10-48 2-38 (173)
251 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00088 1.9E-08 51.7 10.5 23 8-30 29-51 (213)
252 COG4619 ABC-type uncharacteriz 97.6 0.00072 1.6E-08 49.1 9.1 22 9-30 30-51 (223)
253 PRK11034 clpA ATP-dependent Cl 97.6 0.00013 2.8E-09 66.3 6.6 24 8-31 488-511 (758)
254 COG1124 DppF ABC-type dipeptid 97.6 0.00063 1.4E-08 52.4 9.1 24 7-30 32-55 (252)
255 PF13604 AAA_30: AAA domain; P 97.6 0.00022 4.8E-09 54.2 6.8 24 7-30 17-40 (196)
256 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0011 2.4E-08 56.7 11.4 28 3-30 105-132 (634)
257 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00021 4.5E-09 56.7 6.7 52 7-60 68-121 (274)
258 PF00448 SRP54: SRP54-type pro 97.6 0.00025 5.3E-09 53.9 6.9 57 8-66 1-58 (196)
259 COG3840 ThiQ ABC-type thiamine 97.6 0.0017 3.6E-08 47.9 10.7 36 7-45 24-59 (231)
260 KOG0729 26S proteasome regulat 97.6 0.00061 1.3E-08 53.1 8.9 25 6-30 209-233 (435)
261 KOG0742 AAA+-type ATPase [Post 97.6 0.00096 2.1E-08 55.2 10.5 24 7-30 383-406 (630)
262 TIGR01069 mutS2 MutS2 family p 97.6 0.00051 1.1E-08 62.8 9.9 24 7-30 321-344 (771)
263 PLN03187 meiotic recombination 97.6 0.00028 6.1E-09 58.1 7.6 57 6-63 124-184 (344)
264 TIGR03881 KaiC_arch_4 KaiC dom 97.6 0.00036 7.9E-09 54.5 7.9 41 6-48 18-58 (229)
265 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00037 8.1E-09 51.0 7.5 117 8-138 25-146 (157)
266 PF07728 AAA_5: AAA domain (dy 97.6 0.00012 2.5E-09 52.5 4.8 40 11-55 2-41 (139)
267 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00027 5.9E-09 58.8 7.3 78 6-104 60-137 (362)
268 COG0468 RecA RecA/RadA recombi 97.6 0.00059 1.3E-08 54.4 8.8 50 6-57 58-107 (279)
269 cd01122 GP4d_helicase GP4d_hel 97.6 0.0014 2.9E-08 52.7 11.1 53 6-61 28-80 (271)
270 PRK13695 putative NTPase; Prov 97.6 0.00017 3.7E-09 53.8 5.6 22 10-31 2-23 (174)
271 KOG0737 AAA+-type ATPase [Post 97.6 0.00053 1.1E-08 55.8 8.5 30 7-38 126-155 (386)
272 PF01583 APS_kinase: Adenylyls 97.6 8.1E-05 1.7E-09 53.9 3.6 36 8-45 2-37 (156)
273 PRK00409 recombination and DNA 97.6 0.00083 1.8E-08 61.6 10.8 25 6-30 325-349 (782)
274 PRK13539 cytochrome c biogenes 97.6 0.0011 2.4E-08 51.0 9.9 25 7-31 27-51 (207)
275 PF13671 AAA_33: AAA domain; P 97.6 6.4E-05 1.4E-09 54.0 2.9 21 10-30 1-21 (143)
276 smart00534 MUTSac ATPase domai 97.5 8.2E-05 1.8E-09 56.1 3.6 21 10-30 1-21 (185)
277 PRK09544 znuC high-affinity zi 97.5 0.0014 3.1E-08 51.9 10.8 25 7-31 29-53 (251)
278 PRK05917 DNA polymerase III su 97.5 0.0023 4.9E-08 51.4 11.8 58 93-152 94-154 (290)
279 cd03224 ABC_TM1139_LivF_branch 97.5 0.002 4.3E-08 50.1 11.2 24 7-30 25-48 (222)
280 PRK13531 regulatory ATPase Rav 97.5 0.0031 6.8E-08 54.0 13.0 23 9-31 40-62 (498)
281 PRK05541 adenylylsulfate kinas 97.5 0.00011 2.3E-09 55.0 3.9 38 6-45 5-42 (176)
282 PF08423 Rad51: Rad51; InterP 97.5 0.00035 7.6E-09 55.4 7.0 55 6-61 36-94 (256)
283 TIGR03499 FlhF flagellar biosy 97.5 0.0006 1.3E-08 55.0 8.4 42 7-48 193-234 (282)
284 TIGR01420 pilT_fam pilus retra 97.5 0.0007 1.5E-08 56.2 9.0 112 8-135 122-233 (343)
285 PRK12723 flagellar biosynthesi 97.5 0.0011 2.4E-08 55.6 10.1 42 7-48 173-216 (388)
286 PF13238 AAA_18: AAA domain; P 97.5 6.2E-05 1.3E-09 52.9 2.3 21 11-31 1-21 (129)
287 COG4618 ArpD ABC-type protease 97.5 0.0018 3.9E-08 55.1 11.1 23 8-30 362-384 (580)
288 PRK15453 phosphoribulokinase; 97.5 0.00078 1.7E-08 53.5 8.5 25 6-30 3-27 (290)
289 TIGR02238 recomb_DMC1 meiotic 97.5 0.00057 1.2E-08 55.8 8.1 57 6-63 94-154 (313)
290 COG3910 Predicted ATPase [Gene 97.5 0.00078 1.7E-08 49.8 7.8 24 7-30 36-59 (233)
291 PRK14738 gmk guanylate kinase; 97.5 0.00012 2.5E-09 56.3 3.9 29 2-30 7-35 (206)
292 PRK13543 cytochrome c biogenes 97.5 0.0035 7.7E-08 48.4 12.2 25 7-31 36-60 (214)
293 COG1618 Predicted nucleotide k 97.5 7.8E-05 1.7E-09 53.5 2.6 24 8-31 5-28 (179)
294 KOG0730 AAA+-type ATPase [Post 97.5 0.00066 1.4E-08 59.3 8.5 155 6-193 216-386 (693)
295 cd03226 ABC_cobalt_CbiO_domain 97.5 0.003 6.5E-08 48.4 11.5 25 7-31 25-49 (205)
296 cd03278 ABC_SMC_barmotin Barmo 97.5 0.0028 6.1E-08 48.2 11.2 20 10-29 24-43 (197)
297 PTZ00035 Rad51 protein; Provis 97.5 0.00084 1.8E-08 55.4 8.8 49 6-54 116-168 (337)
298 cd03235 ABC_Metallic_Cations A 97.5 0.0019 4.2E-08 49.8 10.3 25 7-31 24-48 (213)
299 PF08433 KTI12: Chromatin asso 97.5 0.00024 5.2E-09 56.7 5.3 92 9-117 2-93 (270)
300 cd03232 ABC_PDR_domain2 The pl 97.5 0.0012 2.7E-08 50.0 9.0 24 7-30 32-55 (192)
301 PRK12726 flagellar biosynthesi 97.5 0.0021 4.5E-08 53.4 10.7 90 6-104 204-295 (407)
302 cd03282 ABC_MSH4_euk MutS4 hom 97.5 0.0023 5E-08 48.9 10.5 24 7-30 28-51 (204)
303 TIGR00064 ftsY signal recognit 97.4 0.0017 3.7E-08 52.0 10.1 40 6-47 70-109 (272)
304 TIGR02868 CydC thiol reductant 97.4 0.0021 4.6E-08 56.8 11.6 24 7-30 360-383 (529)
305 cd00984 DnaB_C DnaB helicase C 97.4 0.0012 2.6E-08 52.0 9.2 43 5-48 10-52 (242)
306 TIGR02239 recomb_RAD51 DNA rep 97.4 0.0006 1.3E-08 55.8 7.5 49 6-54 94-146 (316)
307 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.0018 3.9E-08 50.7 9.8 23 8-30 30-52 (254)
308 PF13245 AAA_19: Part of AAA d 97.4 0.00013 2.8E-09 46.2 2.9 24 7-30 9-32 (76)
309 PRK06762 hypothetical protein; 97.4 0.00011 2.4E-09 54.3 3.0 24 8-31 2-25 (166)
310 CHL00206 ycf2 Ycf2; Provisiona 97.4 0.0024 5.1E-08 62.6 12.2 26 6-31 1628-1653(2281)
311 cd02019 NK Nucleoside/nucleoti 97.4 9.4E-05 2E-09 46.0 2.2 22 10-31 1-22 (69)
312 cd03284 ABC_MutS1 MutS1 homolo 97.4 0.00016 3.4E-09 56.0 3.8 21 9-29 31-51 (216)
313 KOG0651 26S proteasome regulat 97.4 0.00055 1.2E-08 54.5 6.8 30 7-38 165-194 (388)
314 cd03369 ABCC_NFT1 Domain 2 of 97.4 0.0034 7.4E-08 48.2 11.3 24 7-30 33-56 (207)
315 COG4133 CcmA ABC-type transpor 97.4 0.0038 8.1E-08 46.3 10.6 23 8-30 28-50 (209)
316 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.0022 4.7E-08 49.0 10.1 22 8-29 28-49 (200)
317 PRK08233 hypothetical protein; 97.4 0.00012 2.7E-09 54.9 3.2 24 8-31 3-26 (182)
318 PF00625 Guanylate_kin: Guanyl 97.4 0.00015 3.3E-09 54.6 3.6 39 7-47 1-39 (183)
319 PRK12724 flagellar biosynthesi 97.4 0.0017 3.6E-08 54.7 9.9 24 7-30 222-245 (432)
320 cd03213 ABCG_EPDR ABCG transpo 97.4 0.0012 2.6E-08 50.2 8.5 24 7-30 34-57 (194)
321 COG1066 Sms Predicted ATP-depe 97.4 0.00086 1.9E-08 55.5 7.9 87 7-104 92-178 (456)
322 TIGR01817 nifA Nif-specific re 97.4 0.0094 2E-07 52.8 15.1 39 8-48 219-257 (534)
323 PRK14250 phosphate ABC transpo 97.4 0.0026 5.7E-08 50.1 10.6 24 8-31 29-52 (241)
324 PF00910 RNA_helicase: RNA hel 97.4 9.7E-05 2.1E-09 50.3 2.2 21 11-31 1-21 (107)
325 COG0572 Udk Uridine kinase [Nu 97.4 0.00039 8.5E-09 52.9 5.6 26 6-31 6-31 (218)
326 PF00485 PRK: Phosphoribulokin 97.4 0.00012 2.6E-09 55.6 2.9 22 10-31 1-22 (194)
327 COG1643 HrpA HrpA-like helicas 97.4 0.0011 2.3E-08 60.6 9.3 126 6-133 63-206 (845)
328 cd03243 ABC_MutS_homologs The 97.4 0.0015 3.3E-08 50.0 8.9 22 9-30 30-51 (202)
329 cd03264 ABC_drug_resistance_li 97.4 0.0026 5.6E-08 49.0 10.3 21 10-30 27-47 (211)
330 cd03244 ABCC_MRP_domain2 Domai 97.4 0.0016 3.4E-08 50.6 9.2 23 8-30 30-52 (221)
331 TIGR03410 urea_trans_UrtE urea 97.4 0.0026 5.7E-08 49.7 10.4 25 7-31 25-49 (230)
332 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.0029 6.3E-08 50.0 10.6 25 7-31 24-48 (246)
333 TIGR03771 anch_rpt_ABC anchore 97.4 0.0038 8.3E-08 48.5 11.2 25 7-31 5-29 (223)
334 PRK10867 signal recognition pa 97.4 0.0021 4.6E-08 54.7 10.3 25 6-30 98-122 (433)
335 PRK07667 uridine kinase; Provi 97.4 0.00019 4E-09 54.5 3.7 27 5-31 14-40 (193)
336 PRK05703 flhF flagellar biosyn 97.4 0.0014 3.1E-08 55.9 9.2 41 8-48 221-261 (424)
337 cd01125 repA Hexameric Replica 97.4 0.0015 3.3E-08 51.3 8.9 21 10-30 3-23 (239)
338 TIGR01425 SRP54_euk signal rec 97.4 0.0027 5.8E-08 53.8 10.7 26 6-31 98-123 (429)
339 PRK05480 uridine/cytidine kina 97.4 0.00018 3.9E-09 55.4 3.6 26 6-31 4-29 (209)
340 cd00227 CPT Chloramphenicol (C 97.4 0.00014 3E-09 54.3 2.8 24 8-31 2-25 (175)
341 cd03217 ABC_FeS_Assembly ABC-t 97.4 0.0019 4.2E-08 49.3 9.1 25 7-31 25-49 (200)
342 TIGR02324 CP_lyasePhnL phospho 97.4 0.004 8.6E-08 48.5 11.0 25 7-31 33-57 (224)
343 PRK06547 hypothetical protein; 97.4 0.00018 3.8E-09 53.5 3.2 27 5-31 12-38 (172)
344 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00017 3.8E-09 54.3 3.2 24 7-30 2-25 (188)
345 TIGR00959 ffh signal recogniti 97.3 0.0032 6.9E-08 53.6 11.0 25 7-31 98-122 (428)
346 COG0563 Adk Adenylate kinase a 97.3 0.00075 1.6E-08 50.3 6.5 22 10-31 2-23 (178)
347 TIGR00235 udk uridine kinase. 97.3 0.0002 4.4E-09 55.0 3.6 26 5-30 3-28 (207)
348 cd01124 KaiC KaiC is a circadi 97.3 0.00018 3.8E-09 54.3 3.2 37 10-48 1-37 (187)
349 PF13481 AAA_25: AAA domain; P 97.3 0.0006 1.3E-08 51.7 6.1 42 8-49 32-81 (193)
350 TIGR03575 selen_PSTK_euk L-ser 97.3 0.0011 2.5E-08 54.4 8.0 23 10-32 1-23 (340)
351 PRK15429 formate hydrogenlyase 97.3 0.0068 1.5E-07 55.3 13.8 40 7-48 398-437 (686)
352 PRK10619 histidine/lysine/argi 97.3 0.0052 1.1E-07 48.9 11.7 25 7-31 30-54 (257)
353 COG0465 HflB ATP-dependent Zn 97.3 0.0019 4.2E-08 56.6 9.6 134 8-168 183-336 (596)
354 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0022 4.8E-08 49.6 9.1 24 7-30 30-53 (222)
355 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.3 0.0032 7E-08 49.0 10.1 25 7-31 47-71 (224)
356 PRK14721 flhF flagellar biosyn 97.3 0.0044 9.4E-08 52.5 11.4 24 7-30 190-213 (420)
357 PRK05818 DNA polymerase III su 97.3 0.036 7.7E-07 43.8 15.6 57 94-152 88-147 (261)
358 COG0467 RAD55 RecA-superfamily 97.3 0.00027 5.8E-09 56.4 4.0 42 6-49 21-62 (260)
359 PTZ00301 uridine kinase; Provi 97.3 0.00019 4E-09 55.1 3.0 24 7-30 2-25 (210)
360 PRK06696 uridine kinase; Valid 97.3 0.0002 4.3E-09 55.8 3.2 27 5-31 19-45 (223)
361 PRK09519 recA DNA recombinatio 97.3 0.00059 1.3E-08 61.8 6.4 91 5-104 57-148 (790)
362 PF07726 AAA_3: ATPase family 97.3 9.5E-05 2.1E-09 51.3 1.2 27 11-39 2-28 (131)
363 TIGR03411 urea_trans_UrtD urea 97.3 0.0081 1.8E-07 47.3 12.3 25 7-31 27-51 (242)
364 cd01121 Sms Sms (bacterial rad 97.3 0.00099 2.1E-08 55.7 7.3 89 6-104 80-168 (372)
365 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00019 4E-09 59.0 3.0 27 5-31 75-101 (361)
366 KOG0728 26S proteasome regulat 97.3 0.0075 1.6E-07 46.8 11.4 132 6-165 179-331 (404)
367 PRK15064 ABC transporter ATP-b 97.3 0.0041 8.8E-08 55.0 11.6 25 7-31 26-50 (530)
368 PF00006 ATP-synt_ab: ATP synt 97.3 0.00034 7.4E-09 53.7 4.2 47 9-59 16-63 (215)
369 cd03254 ABCC_Glucan_exporter_l 97.3 0.01 2.2E-07 46.3 12.7 25 7-31 28-52 (229)
370 COG0488 Uup ATPase components 97.3 0.0012 2.7E-08 57.6 8.1 56 90-151 453-511 (530)
371 PRK13548 hmuV hemin importer A 97.3 0.0048 1E-07 49.2 10.9 25 7-31 27-51 (258)
372 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.0082 1.8E-07 47.2 12.1 25 7-31 28-52 (238)
373 PF00154 RecA: recA bacterial 97.3 0.0013 2.9E-08 53.5 7.7 90 6-104 51-141 (322)
374 cd03245 ABCC_bacteriocin_expor 97.3 0.0047 1E-07 47.9 10.6 25 7-31 29-53 (220)
375 PRK10419 nikE nickel transport 97.3 0.0043 9.2E-08 49.7 10.5 24 8-31 38-61 (268)
376 PRK11131 ATP-dependent RNA hel 97.3 0.0018 3.8E-08 61.8 9.4 124 7-132 88-228 (1294)
377 PRK14723 flhF flagellar biosyn 97.3 0.0045 9.9E-08 56.1 11.5 24 8-31 185-208 (767)
378 cd03300 ABC_PotA_N PotA is an 97.3 0.0063 1.4E-07 47.6 11.2 25 7-31 25-49 (232)
379 PHA00729 NTP-binding motif con 97.3 0.00025 5.4E-09 54.6 3.1 25 7-31 16-40 (226)
380 PRK00131 aroK shikimate kinase 97.3 0.00022 4.8E-09 53.0 2.8 25 7-31 3-27 (175)
381 cd01129 PulE-GspE PulE/GspE Th 97.2 0.00084 1.8E-08 53.5 6.2 108 7-134 79-186 (264)
382 PRK12727 flagellar biosynthesi 97.2 0.0012 2.6E-08 57.1 7.4 41 7-47 349-389 (559)
383 PRK11823 DNA repair protein Ra 97.2 0.0015 3.4E-08 56.1 8.2 89 6-104 78-166 (446)
384 TIGR02974 phageshock_pspF psp 97.2 0.0033 7.3E-08 51.8 9.9 23 8-30 22-44 (329)
385 PRK13657 cyclic beta-1,2-gluca 97.2 0.0047 1E-07 55.4 11.6 24 7-30 360-383 (588)
386 KOG1051 Chaperone HSP104 and r 97.2 0.0014 2.9E-08 60.0 8.0 92 7-116 590-684 (898)
387 TIGR03522 GldA_ABC_ATP gliding 97.2 0.0055 1.2E-07 50.0 11.0 25 7-31 27-51 (301)
388 PF03266 NTPase_1: NTPase; In 97.2 0.0002 4.3E-09 52.9 2.3 21 11-31 2-22 (168)
389 TIGR01351 adk adenylate kinase 97.2 0.0024 5.1E-08 49.2 8.4 20 11-30 2-21 (210)
390 PRK07276 DNA polymerase III su 97.2 0.01 2.2E-07 47.8 12.1 68 93-163 103-173 (290)
391 COG2274 SunT ABC-type bacterio 97.2 0.002 4.3E-08 58.3 8.9 24 7-30 498-521 (709)
392 PRK14269 phosphate ABC transpo 97.2 0.006 1.3E-07 48.2 10.8 24 7-30 27-50 (246)
393 cd02021 GntK Gluconate kinase 97.2 0.00021 4.5E-09 51.9 2.3 22 10-31 1-22 (150)
394 PF00406 ADK: Adenylate kinase 97.2 0.0037 7.9E-08 45.4 8.9 18 13-30 1-18 (151)
395 PRK03839 putative kinase; Prov 97.2 0.00024 5.1E-09 53.3 2.6 22 10-31 2-23 (180)
396 cd03236 ABC_RNaseL_inhibitor_d 97.2 0.0059 1.3E-07 48.5 10.6 26 6-31 24-49 (255)
397 TIGR01967 DEAH_box_HrpA ATP-de 97.2 0.0011 2.4E-08 63.2 7.4 124 7-132 81-221 (1283)
398 PRK14737 gmk guanylate kinase; 97.2 0.00034 7.4E-09 52.7 3.4 25 7-31 3-27 (186)
399 TIGR02322 phosphon_PhnN phosph 97.2 0.00029 6.3E-09 52.8 3.0 23 9-31 2-24 (179)
400 TIGR03574 selen_PSTK L-seryl-t 97.2 0.002 4.3E-08 51.1 7.8 22 10-31 1-22 (249)
401 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0002 4.4E-09 53.8 2.1 21 10-30 1-21 (183)
402 COG1122 CbiO ABC-type cobalt t 97.2 0.004 8.7E-08 48.6 9.3 23 8-30 30-52 (235)
403 PRK11701 phnK phosphonate C-P 97.2 0.005 1.1E-07 49.0 10.1 25 7-31 31-55 (258)
404 PRK11174 cysteine/glutathione 97.2 0.0061 1.3E-07 54.6 11.7 24 7-30 375-398 (588)
405 PRK05399 DNA mismatch repair p 97.2 0.00031 6.8E-09 65.0 3.6 180 6-204 605-793 (854)
406 COG1419 FlhF Flagellar GTP-bin 97.2 0.0021 4.5E-08 53.5 7.9 104 7-119 202-310 (407)
407 TIGR00968 3a0106s01 sulfate AB 97.2 0.0045 9.8E-08 48.6 9.7 25 7-31 25-49 (237)
408 KOG3928 Mitochondrial ribosome 97.2 0.0084 1.8E-07 49.8 11.2 60 142-203 401-460 (461)
409 PRK11608 pspF phage shock prot 97.2 0.0042 9.2E-08 51.2 9.8 23 8-30 29-51 (326)
410 cd03233 ABC_PDR_domain1 The pl 97.2 0.0077 1.7E-07 46.1 10.7 25 7-31 32-56 (202)
411 TIGR03740 galliderm_ABC gallid 97.2 0.0058 1.3E-07 47.5 10.2 25 7-31 25-49 (223)
412 COG4988 CydD ABC-type transpor 97.2 0.0035 7.5E-08 54.3 9.4 24 7-30 346-369 (559)
413 PRK04040 adenylate kinase; Pro 97.2 0.0003 6.5E-09 53.1 2.8 24 8-31 2-25 (188)
414 PRK06002 fliI flagellum-specif 97.2 0.0023 4.9E-08 54.4 8.2 24 7-30 164-187 (450)
415 PRK11160 cysteine/glutathione 97.2 0.0044 9.6E-08 55.3 10.6 24 7-30 365-388 (574)
416 PRK00889 adenylylsulfate kinas 97.2 0.00042 9.1E-09 51.7 3.6 25 7-31 3-27 (175)
417 cd02027 APSK Adenosine 5'-phos 97.2 0.0045 9.7E-08 44.9 8.8 22 10-31 1-22 (149)
418 PRK10416 signal recognition pa 97.2 0.0079 1.7E-07 49.3 11.2 26 6-31 112-137 (318)
419 cd03253 ABCC_ATM1_transporter 97.2 0.01 2.2E-07 46.6 11.5 25 7-31 26-50 (236)
420 KOG0924 mRNA splicing factor A 97.2 0.0031 6.8E-08 55.4 9.0 126 7-136 370-514 (1042)
421 TIGR02655 circ_KaiC circadian 97.2 0.001 2.3E-08 57.9 6.4 94 6-104 261-363 (484)
422 PHA02774 E1; Provisional 97.2 0.002 4.3E-08 56.2 7.8 40 3-46 429-468 (613)
423 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00047 1E-08 46.5 3.3 23 7-29 14-36 (107)
424 TIGR03375 type_I_sec_LssB type 97.1 0.0075 1.6E-07 55.2 12.0 24 7-30 490-513 (694)
425 TIGR03263 guanyl_kin guanylate 97.1 0.00036 7.8E-09 52.3 3.0 22 9-30 2-23 (180)
426 COG1875 NYN ribonuclease and A 97.1 0.0013 2.8E-08 53.7 6.1 37 96-133 353-389 (436)
427 COG0396 sufC Cysteine desulfur 97.1 0.0017 3.7E-08 49.6 6.4 25 8-32 30-54 (251)
428 cd00071 GMPK Guanosine monopho 97.1 0.00037 8.1E-09 49.7 2.8 21 10-30 1-21 (137)
429 PF13555 AAA_29: P-loop contai 97.1 0.00052 1.1E-08 41.2 2.9 22 9-30 24-45 (62)
430 PRK10636 putative ABC transpor 97.1 0.011 2.4E-07 53.4 12.8 24 8-31 27-50 (638)
431 COG0194 Gmk Guanylate kinase [ 97.1 0.00044 9.5E-09 51.0 3.1 25 7-31 3-27 (191)
432 KOG0740 AAA+-type ATPase [Post 97.1 0.0028 6.1E-08 53.2 8.1 25 6-30 184-208 (428)
433 cd03248 ABCC_TAP TAP, the Tran 97.1 0.007 1.5E-07 47.1 10.0 25 7-31 39-63 (226)
434 COG1936 Predicted nucleotide k 97.1 0.00038 8.3E-09 50.6 2.6 21 10-30 2-22 (180)
435 cd02025 PanK Pantothenate kina 97.1 0.00066 1.4E-08 52.6 4.1 22 10-31 1-22 (220)
436 PRK03846 adenylylsulfate kinas 97.1 0.00065 1.4E-08 51.8 4.0 26 6-31 22-47 (198)
437 COG0529 CysC Adenylylsulfate k 97.1 0.00059 1.3E-08 49.8 3.5 26 6-31 21-46 (197)
438 KOG0726 26S proteasome regulat 97.1 0.0052 1.1E-07 48.7 8.9 24 7-30 218-241 (440)
439 PRK11176 lipid transporter ATP 97.1 0.0055 1.2E-07 54.8 10.4 24 7-30 368-391 (582)
440 TIGR02857 CydD thiol reductant 97.1 0.0094 2E-07 52.7 11.8 24 7-30 347-370 (529)
441 cd02023 UMPK Uridine monophosp 97.1 0.00036 7.7E-09 53.2 2.4 22 10-31 1-22 (198)
442 cd02028 UMPK_like Uridine mono 97.1 0.00039 8.5E-09 52.1 2.6 22 10-31 1-22 (179)
443 TIGR01192 chvA glucan exporter 97.1 0.01 2.2E-07 53.2 11.8 24 7-30 360-383 (585)
444 TIGR02524 dot_icm_DotB Dot/Icm 97.1 0.00078 1.7E-08 56.0 4.5 96 7-113 133-231 (358)
445 cd01132 F1_ATPase_alpha F1 ATP 97.1 0.0026 5.7E-08 50.4 7.2 50 7-60 68-120 (274)
446 smart00072 GuKc Guanylate kina 97.1 0.00062 1.4E-08 51.3 3.6 24 8-31 2-25 (184)
447 COG4136 ABC-type uncharacteriz 97.1 0.00075 1.6E-08 48.1 3.7 39 7-45 27-65 (213)
448 KOG0922 DEAH-box RNA helicase 97.1 0.0033 7.2E-08 55.0 8.3 125 7-133 65-206 (674)
449 PRK13643 cbiO cobalt transport 97.1 0.0069 1.5E-07 49.1 9.9 24 8-31 32-55 (288)
450 PF03796 DnaB_C: DnaB-like hel 97.1 0.0022 4.8E-08 51.1 6.9 56 6-64 17-72 (259)
451 PRK14529 adenylate kinase; Pro 97.1 0.012 2.5E-07 45.7 10.5 21 11-31 3-23 (223)
452 COG1123 ATPase components of v 97.1 0.0052 1.1E-07 53.3 9.4 54 87-140 440-498 (539)
453 cd01135 V_A-ATPase_B V/A-type 97.1 0.0054 1.2E-07 48.7 8.8 53 9-61 70-125 (276)
454 TIGR02203 MsbA_lipidA lipid A 97.1 0.0079 1.7E-07 53.7 11.1 24 7-30 357-380 (571)
455 PRK09302 circadian clock prote 97.0 0.0028 6E-08 55.7 8.0 94 6-104 271-373 (509)
456 COG4178 ABC-type uncharacteriz 97.0 0.0062 1.4E-07 53.5 9.9 129 8-137 419-579 (604)
457 TIGR02236 recomb_radA DNA repa 97.0 0.0017 3.8E-08 53.2 6.4 50 6-55 93-146 (310)
458 PF13086 AAA_11: AAA domain; P 97.0 0.00055 1.2E-08 53.3 3.3 22 10-31 19-40 (236)
459 PF08477 Miro: Miro-like prote 97.0 0.00052 1.1E-08 47.5 2.8 21 11-31 2-22 (119)
460 PLN03186 DNA repair protein RA 97.0 0.0039 8.6E-08 51.5 8.3 57 6-63 121-181 (342)
461 PRK10875 recD exonuclease V su 97.0 0.0031 6.7E-08 56.2 8.2 23 8-30 167-189 (615)
462 PRK00300 gmk guanylate kinase; 97.0 0.00053 1.2E-08 52.6 3.1 25 7-31 4-28 (205)
463 cd02029 PRK_like Phosphoribulo 97.0 0.0028 6E-08 50.0 7.0 21 10-30 1-21 (277)
464 cd00046 DEXDc DEAD-like helica 97.0 0.0032 6.9E-08 44.4 7.0 36 10-45 2-37 (144)
465 PF03029 ATP_bind_1: Conserved 97.0 0.00053 1.2E-08 53.7 3.0 34 13-48 1-34 (238)
466 PF03308 ArgK: ArgK protein; 97.0 0.00047 1E-08 53.8 2.6 27 5-31 26-52 (266)
467 PF03205 MobB: Molybdopterin g 97.0 0.00063 1.4E-08 48.7 3.1 39 9-48 1-39 (140)
468 smart00487 DEXDc DEAD-like hel 97.0 0.0035 7.7E-08 47.1 7.5 21 9-29 25-45 (201)
469 PRK06217 hypothetical protein; 97.0 0.00044 9.5E-09 52.0 2.4 22 10-31 3-24 (183)
470 cd03289 ABCC_CFTR2 The CFTR su 97.0 0.0087 1.9E-07 48.1 9.9 25 7-31 29-53 (275)
471 COG1102 Cmk Cytidylate kinase 97.0 0.00023 5E-09 51.1 0.8 22 10-31 2-23 (179)
472 PRK07594 type III secretion sy 97.0 0.0028 6.1E-08 53.8 7.4 48 7-58 154-202 (433)
473 TIGR01313 therm_gnt_kin carboh 97.0 0.00038 8.2E-09 51.3 2.0 21 11-31 1-21 (163)
474 PRK10751 molybdopterin-guanine 97.0 0.00077 1.7E-08 49.8 3.6 26 6-31 4-29 (173)
475 PRK12678 transcription termina 97.0 0.0027 5.9E-08 55.3 7.3 24 8-31 416-439 (672)
476 PRK14527 adenylate kinase; Pro 97.0 0.00062 1.4E-08 51.6 3.2 24 7-30 5-28 (191)
477 PRK10789 putative multidrug tr 97.0 0.0092 2E-07 53.3 11.0 24 7-30 340-363 (569)
478 TIGR00416 sms DNA repair prote 97.0 0.0032 6.9E-08 54.2 7.8 41 6-48 92-132 (454)
479 PRK10078 ribose 1,5-bisphospho 97.0 0.00059 1.3E-08 51.5 3.0 23 9-31 3-25 (186)
480 PRK11147 ABC transporter ATPas 97.0 0.02 4.3E-07 51.8 13.2 25 7-31 28-52 (635)
481 cd03299 ABC_ModC_like Archeal 97.0 0.014 3E-07 45.8 10.8 25 7-31 24-48 (235)
482 cd02024 NRK1 Nicotinamide ribo 97.0 0.00041 8.9E-09 52.1 2.1 22 10-31 1-22 (187)
483 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00062 1.4E-08 48.0 2.9 26 7-32 21-46 (133)
484 PRK13808 adenylate kinase; Pro 97.0 0.0086 1.9E-07 49.1 9.8 20 11-30 3-22 (333)
485 PRK05022 anaerobic nitric oxid 97.0 0.0077 1.7E-07 52.9 10.2 40 8-49 210-249 (509)
486 PRK00625 shikimate kinase; Pro 97.0 0.0005 1.1E-08 51.1 2.4 22 10-31 2-23 (173)
487 TIGR00958 3a01208 Conjugate Tr 97.0 0.014 3.1E-07 53.5 12.3 24 7-30 506-529 (711)
488 TIGR03600 phage_DnaB phage rep 97.0 0.0071 1.5E-07 51.8 9.7 57 4-63 190-246 (421)
489 PRK08149 ATP synthase SpaL; Va 97.0 0.0066 1.4E-07 51.5 9.3 25 7-31 150-174 (428)
490 PRK14530 adenylate kinase; Pro 97.0 0.00056 1.2E-08 52.9 2.8 22 9-30 4-25 (215)
491 PRK06731 flhF flagellar biosyn 97.0 0.012 2.7E-07 46.9 10.3 40 7-48 74-113 (270)
492 PRK13537 nodulation ABC transp 97.0 0.0042 9.1E-08 50.8 8.0 24 8-31 33-56 (306)
493 TIGR01070 mutS1 DNA mismatch r 97.0 0.00042 9E-09 63.9 2.3 25 6-30 590-614 (840)
494 TIGR02204 MsbA_rel ABC transpo 97.0 0.011 2.4E-07 52.8 11.2 24 7-30 365-388 (576)
495 PTZ00185 ATPase alpha subunit; 97.0 0.0088 1.9E-07 51.6 9.8 44 8-51 189-238 (574)
496 COG1131 CcmA ABC-type multidru 97.0 0.0063 1.4E-07 49.4 8.8 25 7-31 30-54 (293)
497 COG1116 TauB ABC-type nitrate/ 97.0 0.00066 1.4E-08 52.5 2.9 24 7-30 28-51 (248)
498 TIGR01842 type_I_sec_PrtD type 97.0 0.015 3.2E-07 51.6 11.9 25 7-31 343-367 (544)
499 PRK15064 ABC transporter ATP-b 97.0 0.015 3.3E-07 51.4 11.8 24 8-31 345-368 (530)
500 KOG0066 eIF2-interacting prote 97.0 0.0063 1.4E-07 51.1 8.7 26 6-31 611-636 (807)
No 1
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-42 Score=280.86 Aligned_cols=250 Identities=32% Similarity=0.546 Sum_probs=194.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
+++.++|+|+|+||+||||||.+++++...+.+|+.++|+++....+...++..++.++....... ....+.....
T Consensus 16 ~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~ 91 (287)
T PF00931_consen 16 SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI----SDPKDIEELQ 91 (287)
T ss_dssp TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS----SCCSSHHHHH
T ss_pred CCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence 478999999999999999999999996558899999999999888887888888888886653221 2334566788
Q ss_pred HHHHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHHHHH
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~ 164 (263)
..+.+.+.++++||||||+++...++.+...++....+++||||||+..+....... ...+++++|+.+|+++||.+.
T Consensus 92 ~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 92 DQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp HHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEEECSS--HHHHHHHHHHH
T ss_pred ccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 999999999999999999999988888877777777789999999998877665432 378999999999999999999
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccCCCC-CchhHHHHHHHhhcc
Q 039728 165 ASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDP-HLKDCNRVLSEGYHD 243 (263)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~ 243 (263)
++... .......++.+++|++.|+|+|++|+++|++|+.+. +...|...++++........ ....+..++..||+.
T Consensus 170 ~~~~~--~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~ 246 (287)
T PF00931_consen 170 AGRKE--SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-TVDEWEEALEELENSLRESRDYDRSVFSALELSYDS 246 (287)
T ss_dssp HTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-SSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHS
T ss_pred ccccc--cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccceechhc
Confidence 87652 122344467889999999999999999999996655 36889999988766654322 358899999999999
Q ss_pred CchhhhHHHhhhhccCCCCC
Q 039728 244 LPHHLKSCLLYFGLFQESCK 263 (263)
Q Consensus 244 L~~~~~~~~~~la~fp~~~~ 263 (263)
|+++.|+||.+||+||+++.
T Consensus 247 L~~~~~~~f~~L~~f~~~~~ 266 (287)
T PF00931_consen 247 LPDELRRCFLYLSIFPEGVP 266 (287)
T ss_dssp SHTCCHHHHHHGGGSGTTS-
T ss_pred CCccHHHHHhhCcCCCCCce
Confidence 99999999999999999863
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-41 Score=298.60 Aligned_cols=245 Identities=33% Similarity=0.607 Sum_probs=212.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-cccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDG-LKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.++.|+||||+||||||++++++.. ++.+|+.++|+.++...+...+..+++..+....... ...........+
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~-----~~~~~~~~~~~i 254 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEW-----EDKEEDELASKL 254 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCccc-----chhhHHHHHHHH
Confidence 8999999999999999999999877 8999999999999999999999999999887643221 122236788888
Q ss_pred HHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHHHHHhcC
Q 039728 88 RGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~ 167 (263)
.+.+.++|++|||||+|+..+|+.+...++....|++|++|||+..+....... ...+++..|+.+|||++|.+.++.
T Consensus 255 ~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~--~~~~~v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 255 LNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV--DYPIEVECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred HHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC--CccccccccCccccHHHHHHhhcc
Confidence 999999999999999999999999999999888899999999999998773222 378999999999999999999987
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccCCCC--CchhHHHHHHHhhccCc
Q 039728 168 PSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDP--HLKDCNRVLSEGYHDLP 245 (263)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~L~ 245 (263)
.. ....+..++++++++++|+|+|+|++++|+.|+.+.. ..+|..+...+......+. ..+.+..++..||+.|+
T Consensus 333 ~~--~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~ 409 (889)
T KOG4658|consen 333 NT--LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP 409 (889)
T ss_pred cc--ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh
Confidence 63 2223448999999999999999999999999998887 7899999999877744332 24689999999999999
Q ss_pred hhhhHHHhhhhccCCCCC
Q 039728 246 HHLKSCLLYFGLFQESCK 263 (263)
Q Consensus 246 ~~~~~~~~~la~fp~~~~ 263 (263)
++.|.||+|||+||++|+
T Consensus 410 ~~lK~CFLycalFPED~~ 427 (889)
T KOG4658|consen 410 EELKSCFLYCALFPEDYE 427 (889)
T ss_pred HHHHHHHHhhccCCcccc
Confidence 889999999999999985
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.5e-32 Score=253.44 Aligned_cols=235 Identities=24% Similarity=0.358 Sum_probs=181.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC---CCC-----------C-HHHHHHHHHHHHhhccC
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG---KEY-----------N-KNELLRTVIKEFHSFSG 68 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~-~~~~~~~l~~~l~~~~~ 68 (263)
..++.++|+|+||+|+||||||+++++ ++...|++.+|+... ... . .......++..+....+
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~ 280 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD 280 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC
Confidence 346789999999999999999999999 677788888887531 000 0 11222333333332211
Q ss_pred CCCccccccccHHHHHHHHHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCcccee
Q 039728 69 QPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHE 148 (263)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~ 148 (263)
.. . . ....+++++.++++||||||+|+...++.+.....+..+|++||||||+..+....... +.|+
T Consensus 281 ~~----~--~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~ 347 (1153)
T PLN03210 281 IK----I--Y----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYE 347 (1153)
T ss_pred cc----c--C----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEE
Confidence 10 0 0 12456777889999999999999888888776666667899999999999887654332 7899
Q ss_pred ccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccCCCC
Q 039728 149 LETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDP 228 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (263)
++.++.++|+++|.+++++.. .++....+++++++++|+|+|||++++|+.|+.+. ..+|...+++++....
T Consensus 348 v~~l~~~ea~~LF~~~Af~~~---~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--~~~W~~~l~~L~~~~~--- 419 (1153)
T PLN03210 348 VCLPSNELALEMFCRSAFKKN---SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--KEDWMDMLPRLRNGLD--- 419 (1153)
T ss_pred ecCCCHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHhCcc---
Confidence 999999999999999998763 23566788999999999999999999999998764 5999999999875432
Q ss_pred CchhHHHHHHHhhccCch-hhhHHHhhhhccCCCCC
Q 039728 229 HLKDCNRVLSEGYHDLPH-HLKSCLLYFGLFQESCK 263 (263)
Q Consensus 229 ~~~~~~~~l~~s~~~L~~-~~~~~~~~la~fp~~~~ 263 (263)
..+..++..||+.|++ .+|.+|+++|+||++++
T Consensus 420 --~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~ 453 (1153)
T PLN03210 420 --GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEK 453 (1153)
T ss_pred --HHHHHHHHHhhhccCccchhhhhheehhhcCCCC
Confidence 5799999999999986 59999999999998763
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.79 E-value=1.1e-17 Score=155.17 Aligned_cols=237 Identities=16% Similarity=0.185 Sum_probs=151.6
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC-CCCHHHHHHHHHHHHhhccCCCCccc------
Q 039728 2 VNGRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK-EYNKNELLRTVIKEFHSFSGQPTPVE------ 74 (263)
Q Consensus 2 ~~~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~------ 74 (263)
++.....++++|+||+|.||||++.+++.. . . .+.|+++.. +.+...++..++..+........+..
T Consensus 26 l~~~~~~~~~~v~apaG~GKTtl~~~~~~~--~--~--~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~ 99 (903)
T PRK04841 26 LSGANNYRLVLVTSPAGYGKTTLISQWAAG--K--N--NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQK 99 (903)
T ss_pred HhcccCCCeEEEECCCCCCHHHHHHHHHHh--C--C--CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhcc
Confidence 344567899999999999999999999862 2 1 478999864 45667777888887754322211100
Q ss_pred cccccHHHHHHHHHHHhC--CceEEEEEeCCCCc--hhHH-HHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceec
Q 039728 75 IHKMEEMELITTLRGHLK--DKNYMVVFDDVWKI--DFWG-DVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHEL 149 (263)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~--~~~~LlvlD~~~~~--~~~~-~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l 149 (263)
....+.......+...+. +++++|||||++.. .... .+...+...+++.++|||||..................+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l 179 (903)
T PRK04841 100 RQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEI 179 (903)
T ss_pred CCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceec
Confidence 011122334444444443 57899999999853 2333 333334445667789999998533221111001123445
Q ss_pred c----CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccC
Q 039728 150 E----TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILG 225 (263)
Q Consensus 150 ~----~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (263)
. +|+.+|+.+||....+.... .+.+.++++.|+|+|+++.+++..+.....+.... ...+.
T Consensus 180 ~~~~l~f~~~e~~~ll~~~~~~~~~--------~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~~~~~---- 244 (903)
T PRK04841 180 GSQQLAFDHQEAQQFFDQRLSSPIE--------AAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---ARRLA---- 244 (903)
T ss_pred CHHhCCCCHHHHHHHHHhccCCCCC--------HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---hHhhc----
Confidence 5 89999999999887654321 47788999999999999999998876543311111 11111
Q ss_pred CCCCchhHHHHHHH-hhccCchhhhHHHhhhhccCC
Q 039728 226 SDPHLKDCNRVLSE-GYHDLPHHLKSCLLYFGLFQE 260 (263)
Q Consensus 226 ~~~~~~~~~~~l~~-s~~~L~~~~~~~~~~la~fp~ 260 (263)
..+ ...+...+.. .++.||++.++++..+|++++
T Consensus 245 ~~~-~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~ 279 (903)
T PRK04841 245 GIN-ASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS 279 (903)
T ss_pred CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccccc
Confidence 101 1346666544 489999999999999999873
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.71 E-value=2.7e-16 Score=136.76 Aligned_cols=238 Identities=15% Similarity=0.192 Sum_probs=166.2
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC-CCCHHHHHHHHHHHHhhccCCCCcc------c
Q 039728 2 VNGRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK-EYNKNELLRTVIKEFHSFSGQPTPV------E 74 (263)
Q Consensus 2 ~~~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~------~ 74 (263)
|......|.++|..|+|.|||||+.+++. .. ..-..+.|+++++ +.++..++..++..+..-.....+. .
T Consensus 31 L~~~~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~ 107 (894)
T COG2909 31 LRRANDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQK 107 (894)
T ss_pred HhcCCCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHh
Confidence 45567899999999999999999999986 22 2344688999766 5678888889988887543222111 1
Q ss_pred cccccHHHHHHHHHHHhC--CceEEEEEeCCC---CchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceec
Q 039728 75 IHKMEEMELITTLRGHLK--DKNYMVVFDDVW---KIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHEL 149 (263)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~--~~~~LlvlD~~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l 149 (263)
....+...++..+...+. .+++.+||||.+ +..-...+...+.+.+++..+++|||+.......+.......+++
T Consensus 108 ~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi 187 (894)
T COG2909 108 HQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEI 187 (894)
T ss_pred cccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhc
Confidence 222334445555555443 478999999988 333344566666777889999999999877766555444455555
Q ss_pred c----CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccC
Q 039728 150 E----TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILG 225 (263)
Q Consensus 150 ~----~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (263)
. .|+.+|+.+||....+.+. ....++.+.+.++|++-++.+++=.++.+.+ .+.-...+.
T Consensus 188 ~~~~Lrf~~eE~~~fl~~~~~l~L--------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~-~~q~~~~Ls------- 251 (894)
T COG2909 188 GSEELRFDTEEAAAFLNDRGSLPL--------DAADLKALYDRTEGWAAALQLIALALRNNTS-AEQSLRGLS------- 251 (894)
T ss_pred ChHhhcCChHHHHHHHHHcCCCCC--------ChHHHHHHHhhcccHHHHHHHHHHHccCCCc-HHHHhhhcc-------
Confidence 5 4899999999998875432 2578999999999999999999998883333 222222111
Q ss_pred CCCCchhHHH-HHHHhhccCchhhhHHHhhhhccCC
Q 039728 226 SDPHLKDCNR-VLSEGYHDLPHHLKSCLLYFGLFQE 260 (263)
Q Consensus 226 ~~~~~~~~~~-~l~~s~~~L~~~~~~~~~~la~fp~ 260 (263)
.. .+-+.. ..+..++.||++.|.++..+|+++.
T Consensus 252 G~--~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~ 285 (894)
T COG2909 252 GA--ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR 285 (894)
T ss_pred ch--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Confidence 00 022222 4455789999999999999999763
No 6
>PF05729 NACHT: NACHT domain
Probab=99.59 E-value=1.1e-14 Score=108.00 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccC----CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTH----FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
|+++|+|++|+||||++++++........ +..++|+........... ..+...+....... .. ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~----~~--~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPES----IA--PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccc----hh--hhHH--
Confidence 68999999999999999999875322222 235556666553332211 22222222111100 00 0001
Q ss_pred HHHHHHh-CCceEEEEEeCCCCchh---------HHHHHHhccCC--CCCcEEEEEeCchhhhhhhccCCCccceeccCC
Q 039728 85 TTLRGHL-KDKNYMVVFDDVWKIDF---------WGDVEHALLDN--KKCGRIIVTTRHMNVAKACKSSSPVHIHELETL 152 (263)
Q Consensus 85 ~~~~~~l-~~~~~LlvlD~~~~~~~---------~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~l 152 (263)
.+.... ..++++||+|++|+... +..+...+... .++++++||+|+...............+.+.+|
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 111112 46789999999984332 22233333333 568899999999776433333333368999999
Q ss_pred CccchHHHHHHHhc
Q 039728 153 PPNEAWKLFCRKAS 166 (263)
Q Consensus 153 s~~e~~~ll~~~~~ 166 (263)
+.++..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 151 SEEDIKQYLRKYFS 164 (166)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988763
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.55 E-value=1.3e-12 Score=104.81 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=108.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
+.++++|+|++|+||||+++.++..... ... ..+|+ .....+..+.+..++..+...... .........+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~----~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG----RDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC----CCHHHHHHHHHHH
Confidence 3568999999999999999999984321 111 12232 233345666666776665332111 0000011122222
Q ss_pred HHHHh-CCceEEEEEeCCCCch--hHHHHHHhccCC----CCCcEEEEEeCchhhhhhhcc-------CCCccceeccCC
Q 039728 87 LRGHL-KDKNYMVVFDDVWKID--FWGDVEHALLDN----KKCGRIIVTTRHMNVAKACKS-------SSPVHIHELETL 152 (263)
Q Consensus 87 ~~~~l-~~~~~LlvlD~~~~~~--~~~~l~~~l~~~----~~~~~iliTsR~~~~~~~~~~-------~~~~~~~~l~~l 152 (263)
+.... .+++.++|+|+++... .++.+.. +... .....+++|..... ...... ......+.++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCC
Confidence 32222 5678899999998543 3444332 2221 22234556655432 111110 001246789999
Q ss_pred CccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 153 PPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 153 s~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
+.+|..+++..++..... .....-.++.++.|++.++|+|..++.++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~-~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGN-RDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCC-CCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999988753311 11122346899999999999999999999876
No 8
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.52 E-value=5.4e-12 Score=106.67 Aligned_cols=232 Identities=16% Similarity=0.086 Sum_probs=133.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.+.|+|++|+|||++++.++++.......-..+|+++....+....+..++.++..... ...+.+......
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~ 127 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPP-----PSSGLSFDELFD 127 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCC-----CCCCCCHHHHHH
Confidence 345668999999999999999999843222212345678887777777888888887754210 112223455566
Q ss_pred HHHHHhC--CceEEEEEeCCCCch------hHHHHHHhccCCCC-CcEEEEEeCchhhhhhh----ccCCCccceeccCC
Q 039728 86 TLRGHLK--DKNYMVVFDDVWKID------FWGDVEHALLDNKK-CGRIIVTTRHMNVAKAC----KSSSPVHIHELETL 152 (263)
Q Consensus 86 ~~~~~l~--~~~~LlvlD~~~~~~------~~~~l~~~l~~~~~-~~~iliTsR~~~~~~~~----~~~~~~~~~~l~~l 152 (263)
.+.+.+. +++++||||++|... .+..+...+..... +..+|.+++........ ........+.++++
T Consensus 128 ~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py 207 (394)
T PRK00411 128 KIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPY 207 (394)
T ss_pred HHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCC
Confidence 6666654 456899999998532 23333332222211 23356666554332221 11112256899999
Q ss_pred CccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhc----CCChhHHHHHHHHhc----cC--CCCHHHHHHHHHHhcc
Q 039728 153 PPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKC----EGLPLAIVAVGGLLS----TK--NRVVSEWKKLFDRLGS 222 (263)
Q Consensus 153 s~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Pl~l~~~~~~l~----~~--~~~~~~~~~~~~~~~~ 222 (263)
+.++..+++..++......... .++.++.+++.+ |..+.++.++-..+. .. .-+.+....+...+
T Consensus 208 ~~~e~~~il~~r~~~~~~~~~~---~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~-- 282 (394)
T PRK00411 208 TADEIFDILKDRVEEGFYPGVV---DDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS-- 282 (394)
T ss_pred CHHHHHHHHHHHHHhhcccCCC---CHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH--
Confidence 9999999999887432111111 233444444444 445666666543321 11 11344555554433
Q ss_pred ccCCCCCchhHHHHHHHhhccCchhhhHHHhhhhc
Q 039728 223 ILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGL 257 (263)
Q Consensus 223 ~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~ 257 (263)
....+...+..||..+|.++..++.
T Consensus 283 ----------~~~~~~~~~~~L~~~~k~~L~ai~~ 307 (394)
T PRK00411 283 ----------EIVHLSEVLRTLPLHEKLLLRAIVR 307 (394)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1233456688899888888777653
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=1.6e-11 Score=102.81 Aligned_cols=236 Identities=16% Similarity=0.142 Sum_probs=130.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc---CC-ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT---HF-SSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEM 81 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 81 (263)
...+.+.|+|++|+|||++++.++++..... .. -..+|+++....+...++..++.++.. .+... .....+..
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~-~~~~~--~~~~~~~~ 114 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRG-SGEEV--PTTGLSTS 114 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCC--CCCCCCHH
Confidence 3456789999999999999999988421110 11 235688887777778888888888853 11111 11122333
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCCch-----hHHHHHHhc--cCCC-CCcEEEEEeCchhhhhh----hccCCCccce
Q 039728 82 ELITTLRGHL--KDKNYMVVFDDVWKID-----FWGDVEHAL--LDNK-KCGRIIVTTRHMNVAKA----CKSSSPVHIH 147 (263)
Q Consensus 82 ~~~~~~~~~l--~~~~~LlvlD~~~~~~-----~~~~l~~~l--~~~~-~~~~iliTsR~~~~~~~----~~~~~~~~~~ 147 (263)
.....+.+.+ .+++++||||++|... .+..+.... .... .+..+|.+++....... .........+
T Consensus 115 ~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i 194 (365)
T TIGR02928 115 EVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEI 194 (365)
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCccee
Confidence 4445555554 3567899999998541 122222221 1111 23345555554432211 1111112468
Q ss_pred eccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH-h----cc--CCCCHHHHHHHHHHh
Q 039728 148 ELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGL-L----ST--KNRVVSEWKKLFDRL 220 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~-l----~~--~~~~~~~~~~~~~~~ 220 (263)
.+++++.+|..+++..++.....+.....+.-+.+..++..+.|.+..+..+... + .. ..-+.+....+...+
T Consensus 195 ~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 195 IFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 8999999999999999875221111223333345566777777888544332221 1 11 112334444444433
Q ss_pred ccccCCCCCchhHHHHHHHhhccCchhhhHHHhhhh
Q 039728 221 GSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFG 256 (263)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la 256 (263)
. ...+...+..||..++.++..++
T Consensus 275 ~------------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 275 E------------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred H------------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 23345567788887777766654
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.41 E-value=3.4e-12 Score=100.00 Aligned_cols=184 Identities=18% Similarity=0.145 Sum_probs=91.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHH----------HHHHhhccCCCCc----
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTV----------IKEFHSFSGQPTP---- 72 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~l~~~~~~~~~---- 72 (263)
..+.++|+|+.|+|||+|+.++.+ ..+.....++|+....... ....... ...+.........
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLADELSEALGISIPSITLEKIS 95 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEE
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 467899999999999999999998 3433222455555444332 2222222 1222221111110
Q ss_pred ---cccccccHHHHHHHHHHHhCCceEEEEEeCCCCch--------hHHHHHHhccC--CCCCcEEEEEeCchhhhhhhc
Q 039728 73 ---VEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKID--------FWGDVEHALLD--NKKCGRIIVTTRHMNVAKACK 139 (263)
Q Consensus 73 ---~~~~~~~~~~~~~~~~~~l~~~~~LlvlD~~~~~~--------~~~~l~~~l~~--~~~~~~iliTsR~~~~~~~~~ 139 (263)
..........+...+.. .+++++||+|+++... ....+...+.. ...+..++++...........
T Consensus 96 ~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 96 KDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp CTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 01111222333333332 2345999999998544 12223333322 122334445544443332211
Q ss_pred -----cCCCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 140 -----SSSPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 140 -----~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
.......+.+++|+.+++.+++...+... ... +..+..+++++..+||+|..|..+
T Consensus 174 ~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 174 DDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp -TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHHHHHHHHHHTT-HHHHHHH
T ss_pred cccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 11222459999999999999999976433 011 234677899999999999998753
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.40 E-value=4.5e-11 Score=96.65 Aligned_cols=213 Identities=16% Similarity=0.138 Sum_probs=119.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
.++...+.+|||||+||||||+-+.. .....| ..++...+...-++.++..-
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a--------------------- 96 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEA--------------------- 96 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHH---------------------
Confidence 34677888999999999999999998 444333 33333222222222222211
Q ss_pred HHHHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEE--EeCchhhhhhhccCCCccceeccCCCccchHHHHH
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIV--TTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFC 162 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~ili--TsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~ 162 (263)
-+....+++.+|++|+++.-..- +....++....|.-++| ||-++...-.-...++..++.+++|+.++...++.
T Consensus 97 --~~~~~~gr~tiLflDEIHRfnK~-QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 97 --RKNRLLGRRTILFLDEIHRFNKA-QQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK 173 (436)
T ss_pred --HHHHhcCCceEEEEehhhhcChh-hhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHH
Confidence 11223478899999999843322 22334555566776676 55554332222223445899999999999999998
Q ss_pred HHhcCCC--CCCCCChHHHHHHHHHHHhcCCChhHH----HHHHHHhccCC-CCHHHHHHHHHHhccccCCC-CCchhHH
Q 039728 163 RKASGPS--SGGCCPSELKELSQDILGKCEGLPLAI----VAVGGLLSTKN-RVVSEWKKLFDRLGSILGSD-PHLKDCN 234 (263)
Q Consensus 163 ~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~Pl~l----~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 234 (263)
+.+.... .+.......++....+++.++|-...+ ++++..-+... -..+.+.+.+++.....+.. +..-++-
T Consensus 174 ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdli 253 (436)
T COG2256 174 RALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLI 253 (436)
T ss_pred HHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHH
Confidence 8432221 111112234567888889998876532 22222222221 12455666655544333322 2224566
Q ss_pred HHHHHhhccCchhh
Q 039728 235 RVLSEGYHDLPHHL 248 (263)
Q Consensus 235 ~~l~~s~~~L~~~~ 248 (263)
++|..|...=++++
T Consensus 254 SA~hKSvRGSD~dA 267 (436)
T COG2256 254 SALHKSVRGSDPDA 267 (436)
T ss_pred HHHHHhhccCCcCH
Confidence 66666666555543
No 12
>PF13173 AAA_14: AAA domain
Probab=99.29 E-value=1.4e-11 Score=87.19 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=83.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
+.++++|+|+.|+||||++.+++.+.. ....++|++..+.........+ ..+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~------------------------~~~~ 53 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD------------------------LLEY 53 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh------------------------hHHH
Confidence 357899999999999999999998422 3345678877653221100000 1222
Q ss_pred HHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhc---cCCCccceeccCCCccch
Q 039728 87 LRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACK---SSSPVHIHELETLPPNEA 157 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~---~~~~~~~~~l~~ls~~e~ 157 (263)
+.+....++.+++||+++....|......+.+..++.++++|+++........ ...+...+++.||+..|.
T Consensus 54 ~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 54 FLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 33333346788999999988888888888777667789999999876664311 122235688889987763
No 13
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.28 E-value=7e-12 Score=101.73 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=161.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeE-EEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRA-WVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
...|.+.++|++||||||++.++.+ ....|...+ ++.+..-.+....+..+...++.... ..+...
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----------~g~~~~ 78 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----------PGDSAV 78 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----------cchHHH
Confidence 4568899999999999999999987 445666555 55566656666666666666655421 112344
Q ss_pred HHHHHHhCCceEEEEEeCCCCch-hHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCcc-chHHHHH
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKID-FWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPN-EAWKLFC 162 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~-~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~-e~~~ll~ 162 (263)
..+.....+++.++++||..+.. .-..+...+....+...++.|+|....... .....+++++.. ++.++|.
T Consensus 79 ~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g------e~~~~~~~L~~~d~a~~lf~ 152 (414)
T COG3903 79 DTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG------EVHRRVPSLSLFDEAIELFV 152 (414)
T ss_pred HHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc------cccccCCccccCCchhHHHH
Confidence 45566667889999999986432 222333334444444568888887654322 156778888776 7888988
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccC-C----CCCchhHHHHH
Q 039728 163 RKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILG-S----DPHLKDCNRVL 237 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l 237 (263)
..+................+..|.+...|.|+++..+++..+.-.. ......+++-...+. . ..........+
T Consensus 153 ~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~--~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl 230 (414)
T COG3903 153 CRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP--DEIAAGLRDRFRLLTGGARLAVLRQQTLRASL 230 (414)
T ss_pred HHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH--HHHHHHHhhHHHHHhcccccchhHHHhccchh
Confidence 7766544344555666789999999999999999999999876654 444333332211111 1 11124577899
Q ss_pred HHhhccCchhhhHHHhhhhccCCCC
Q 039728 238 SEGYHDLPHHLKSCLLYFGLFQESC 262 (263)
Q Consensus 238 ~~s~~~L~~~~~~~~~~la~fp~~~ 262 (263)
..||.-|+..++-.|..+++|..+|
T Consensus 231 ~ws~~lLtgwe~~~~~rLa~~~g~f 255 (414)
T COG3903 231 DWSYALLTGWERALFGRLAVFVGGF 255 (414)
T ss_pred hhhhHhhhhHHHHHhcchhhhhhhh
Confidence 9999999999999999999998776
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=5.9e-11 Score=96.87 Aligned_cols=76 Identities=17% Similarity=0.046 Sum_probs=49.7
Q ss_pred CcEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 122 CGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 122 ~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
.+-|..|++............ ...+.+++++.+|..+++.+.+.... ....++.+..|++.|+|.|..+..++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~-~~~~~l~~l~~~e~~~il~~~~~~~~-----~~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRF-GIILRLEFYTVEELAEIVSRSAGLLN-----VEIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEEecCCccccCHHHHhhc-ceEEEeCCCCHHHHHHHHHHHHHHhC-----CCcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 334445666544333322221 14678999999999999998876431 223356788899999999987765555
Q ss_pred Hh
Q 039728 202 LL 203 (263)
Q Consensus 202 ~l 203 (263)
.+
T Consensus 204 ~~ 205 (305)
T TIGR00635 204 RV 205 (305)
T ss_pred HH
Confidence 43
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.27 E-value=1.5e-10 Score=95.33 Aligned_cols=75 Identities=19% Similarity=0.036 Sum_probs=50.1
Q ss_pred cEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 123 GRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 123 ~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
+-|..|++............ ...+.+++++.++..+++.+.+.... ....++.+..|++.|+|.|..+..+...
T Consensus 152 ~li~at~~~~~l~~~L~sRf-~~~~~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRF-GIVQRLEFYTVEELEKIVKRSARILG-----VEIDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred eEEeecCCcccCCHHHHHhc-CeeeecCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 34445666543333222221 14689999999999999998876542 2333577899999999999866666664
Q ss_pred h
Q 039728 203 L 203 (263)
Q Consensus 203 l 203 (263)
+
T Consensus 226 ~ 226 (328)
T PRK00080 226 V 226 (328)
T ss_pred H
Confidence 3
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=99.26 E-value=5.5e-11 Score=92.68 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=93.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.+.|+|++|+|||+|+..+++. .......+.|++...... .. ..
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~~---~~----------------------------~~ 84 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQY---FS----------------------------PA 84 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhhh---hh----------------------------HH
Confidence 3467899999999999999999984 333334566777632100 00 00
Q ss_pred HHHHhCCceEEEEEeCCCCc---hhHH-HHHHhccCC-CCCcEEE-EEeCc---------hhhhhhhccCCCccceeccC
Q 039728 87 LRGHLKDKNYMVVFDDVWKI---DFWG-DVEHALLDN-KKCGRII-VTTRH---------MNVAKACKSSSPVHIHELET 151 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~---~~~~-~l~~~l~~~-~~~~~il-iTsR~---------~~~~~~~~~~~~~~~~~l~~ 151 (263)
+.+.+. +.-+|++||++.. ..++ .+...+... ..+..++ +|++. +...+.+... ..+++++
T Consensus 85 ~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~ 160 (229)
T PRK06893 85 VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLND 160 (229)
T ss_pred HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCC
Confidence 111121 2348999999842 2333 222223222 2244454 45544 1233333222 5789999
Q ss_pred CCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 152 LPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 152 ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
++.++.++++++.+.... ..-.++.++.|++.+.|....+..+...|
T Consensus 161 pd~e~~~~iL~~~a~~~~-----l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRG-----IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred CCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999998875331 23336788899999988887777666655
No 17
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.23 E-value=3.5e-10 Score=103.13 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=103.6
Q ss_pred CceEEEEEeCCC--CchhHH---HHHHhcc--CC-CCCcEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHHHHH
Q 039728 93 DKNYMVVFDDVW--KIDFWG---DVEHALL--DN-KKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~---~l~~~l~--~~-~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~ 164 (263)
.+|+++|+||++ +..++. .++.... .. ......+.+.+.. .............+.+.||+..+...+....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 469999999997 333333 3333322 00 0111122222322 1222233334478999999999999999999
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCC-----CHHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 039728 165 ASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNR-----VVSEWKKLFDRLGSILGSDPHLKDCNRVLSE 239 (263)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (263)
++.. .....+..+.+.+++.|+|+.+..+...+...+- ....|..-...+.. .+...++...+..
T Consensus 232 l~~~------~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~~vv~~l~~ 301 (849)
T COG3899 232 LGCT------KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTDAVVEFLAA 301 (849)
T ss_pred hCCc------ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhHHHHHHHHH
Confidence 8774 2333578899999999999999999999876422 13445444333321 2222446667899
Q ss_pred hhccCchhhhHHHhhhhccCCCC
Q 039728 240 GYHDLPHHLKSCLLYFGLFQESC 262 (263)
Q Consensus 240 s~~~L~~~~~~~~~~la~fp~~~ 262 (263)
.++.||...|+++...|++-+.|
T Consensus 302 rl~kL~~~t~~Vl~~AA~iG~~F 324 (849)
T COG3899 302 RLQKLPGTTREVLKAAACIGNRF 324 (849)
T ss_pred HHhcCCHHHHHHHHHHHHhCccC
Confidence 99999999999999999987665
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.22 E-value=3.1e-11 Score=85.84 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=75.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccC-----CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH-----FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEE 80 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 80 (263)
.+.++++|+|++|+|||+++.+++.. .... ...++|+++....+...+...++..+...... ..+.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~ 72 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------RQTS 72 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------TS-H
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------cCCH
Confidence 35688999999999999999999984 3221 44577999888778889999999988765432 2344
Q ss_pred HHHHHHHHHHhCCc-eEEEEEeCCCCc-h--hHHHHHHhccCCCCCcEEEEEeCc
Q 039728 81 MELITTLRGHLKDK-NYMVVFDDVWKI-D--FWGDVEHALLDNKKCGRIIVTTRH 131 (263)
Q Consensus 81 ~~~~~~~~~~l~~~-~~LlvlD~~~~~-~--~~~~l~~~l~~~~~~~~iliTsR~ 131 (263)
....+.+.+.+.+. ..+||+|+++.. . .++.+.. +.+ ..+.++|++.++
T Consensus 73 ~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 DELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 55666676666544 469999999865 2 2333322 333 566788887775
No 19
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.20 E-value=2.3e-10 Score=89.26 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=93.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.+.|+|++|+|||++|+.+++. ........+|+++...... .. .
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~------------------------~--- 83 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DP------------------------E--- 83 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HH------------------------H---
Confidence 45678999999999999999999884 3222334556665432110 00 0
Q ss_pred HHHHHhCCceEEEEEeCCCCch---h-HHHHHHhccCC-CCCcEEEEEeCchhhh-----hhhccC-CCccceeccCCCc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID---F-WGDVEHALLDN-KKCGRIIVTTRHMNVA-----KACKSS-SPVHIHELETLPP 154 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~---~-~~~l~~~l~~~-~~~~~iliTsR~~~~~-----~~~~~~-~~~~~~~l~~ls~ 154 (263)
+...+. +.-+||+||++... . ...+...+... ..+..+|+|++..... ...... .....+++++++.
T Consensus 84 -~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~ 161 (226)
T TIGR03420 84 -VLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD 161 (226)
T ss_pred -HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH
Confidence 001112 22389999998432 1 33333333221 2234688888753211 111111 0125789999999
Q ss_pred cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 155 NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 155 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
++...+++....... ..-.++.++.+.+.+.|+|..+.-+...+
T Consensus 162 ~e~~~~l~~~~~~~~-----~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 162 EEKIAALQSRAARRG-----LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999987543221 12225677888888999998887776544
No 20
>PF14516 AAA_35: AAA-like domain
Probab=99.18 E-value=8.2e-09 Score=84.86 Aligned_cols=193 Identities=17% Similarity=0.146 Sum_probs=113.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC-----CCHHHHHHHHHHHHhhccCCCCccc----cccc
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE-----YNKNELLRTVIKEFHSFSGQPTPVE----IHKM 78 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~ 78 (263)
...+.|.||-.+|||+|..++.+..+.. .+ .++++++... .+...++..++..+........... ....
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 5688999999999999999998843222 33 4557776542 3466677777777766543221100 0000
Q ss_pred cHHHHHHHHHHHh---CCceEEEEEeCCCCch----hHHHHHHhc----cCCC---C--CcEEEEEeCchhhhhhhccCC
Q 039728 79 EEMELITTLRGHL---KDKNYMVVFDDVWKID----FWGDVEHAL----LDNK---K--CGRIIVTTRHMNVAKACKSSS 142 (263)
Q Consensus 79 ~~~~~~~~~~~~l---~~~~~LlvlD~~~~~~----~~~~l~~~l----~~~~---~--~~~iliTsR~~~~~~~~~~~~ 142 (263)
........+.+.+ .+++++|+||++|..- ...++...+ .... . ..++++....+.........+
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~S 188 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQS 188 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCC
Confidence 1112223333322 2689999999998322 112222222 2111 1 112333222222111111111
Q ss_pred C---ccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHH
Q 039728 143 P---VHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVS 211 (263)
Q Consensus 143 ~---~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~ 211 (263)
+ ...+++++|+.+|...|+.+...... ...+++|...++|+|..+..++..+.....+.+
T Consensus 189 PFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---------~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~~~~~ 251 (331)
T PF14516_consen 189 PFNIGQPIELPDFTPEEVQELAQRYGLEFS---------QEQLEQLMDWTGGHPYLVQKACYLLVEEQITLE 251 (331)
T ss_pred CcccccceeCCCCCHHHHHHHHHhhhccCC---------HHHHHHHHHHHCCCHHHHHHHHHHHHHccCcHH
Confidence 1 24689999999999999987753321 234999999999999999999999977655433
No 21
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.16 E-value=1.1e-09 Score=82.90 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+.+-++|+||++. ....+.+...+...++.+.+|+++++. ........ +...+.+.+++.++..+++.+. +-.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s--r~~~~~~~~~~~~~~~~~l~~~-gi~- 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS--RCQVLPFPPLSEEALLQWLIRQ-GIS- 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh--hcEEeeCCCCCHHHHHHHHHHc-CCC-
Confidence 4556899999984 334667777777766666677666654 33232322 3378999999999999999887 211
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChh
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPL 194 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl 194 (263)
++.+..+++.++|.|.
T Consensus 171 ---------~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 171 ---------EEAAELLLALAGGSPG 186 (188)
T ss_pred ---------HHHHHHHHHHcCCCcc
Confidence 4678999999999985
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.15 E-value=8.9e-09 Score=91.71 Aligned_cols=157 Identities=10% Similarity=0.102 Sum_probs=90.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccc---ccCCc--eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCcccccccc
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGL---KTHFS--SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 79 (263)
.....++.|+|++|+|||+.++.++..... ....+ .++++++........++..+..++.... ...+..
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~------P~~Gls 851 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKK------PPNALN 851 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCC------CCcccc
Confidence 334467789999999999999999874211 11111 3568888877788888888888774321 111222
Q ss_pred HHHHHHHHHHHhC---CceEEEEEeCCCCch--hHHHHHHhccCC-CCCcEEE--EEeCchh----hhhhhccCCCccce
Q 039728 80 EMELITTLRGHLK---DKNYMVVFDDVWKID--FWGDVEHALLDN-KKCGRII--VTTRHMN----VAKACKSSSPVHIH 147 (263)
Q Consensus 80 ~~~~~~~~~~~l~---~~~~LlvlD~~~~~~--~~~~l~~~l~~~-~~~~~il--iTsR~~~----~~~~~~~~~~~~~~ 147 (263)
....+..+...+. ....+||||++|... .-+.|...+.+. ..+++++ .++.... ....+........+
T Consensus 852 S~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeI 931 (1164)
T PTZ00112 852 SFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRL 931 (1164)
T ss_pred HHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccc
Confidence 2334444444432 234699999998422 112222222211 2234433 3443322 12222222222347
Q ss_pred eccCCCccchHHHHHHHhcC
Q 039728 148 ELETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~~~ 167 (263)
.+++++.+|..+++..++..
T Consensus 932 vF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 932 VFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999999864
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=5.8e-09 Score=91.94 Aligned_cols=104 Identities=11% Similarity=0.043 Sum_probs=72.5
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCchhhh-hhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHMNVA-KACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|||+++. ...++.|++.+.....+.++|++|++.... ..+. ++...+.+..++.++..+.|.+.+....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr--SRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL--SRCLQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh--hheEEEecCCcCHHHHHHHHHHHHHHcC
Confidence 3445889999994 345778888777767778888877775433 2222 2337899999999999999998875431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChh-HHHHHHHHh
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPL-AIVAVGGLL 203 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~~~l 203 (263)
....++.+..|++.++|... +++++-..+
T Consensus 196 -----I~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 196 -----IAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22336788889999998764 555544433
No 24
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.12 E-value=8.9e-09 Score=87.35 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=90.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+||||+|+.+++. .... |+.+.........+..++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~~------------------------ 83 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIEE------------------------ 83 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHHH------------------------
Confidence 4557888999999999999999883 3222 22222211111111222111
Q ss_pred HHHH-hCCceEEEEEeCCCCch--hHHHHHHhccCCCCCcEEEEE--eCchhhhhhhccCCCccceeccCCCccchHHHH
Q 039728 87 LRGH-LKDKNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIVT--TRHMNVAKACKSSSPVHIHELETLPPNEAWKLF 161 (263)
Q Consensus 87 ~~~~-l~~~~~LlvlD~~~~~~--~~~~l~~~l~~~~~~~~iliT--sR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll 161 (263)
.... ..+++.++++|+++... ..+.+...+. .+..++|. |.+...........+...+.+.+++.++...++
T Consensus 84 ~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL 160 (413)
T PRK13342 84 ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160 (413)
T ss_pred HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHH
Confidence 1111 13467899999998533 3334443333 24444443 333221111111223368999999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 162 CRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
.+.+.....+. ....++..+.+++.++|.+..+.-+...+
T Consensus 161 ~~~l~~~~~~~--i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 161 KRALEDKERGL--VELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred HHHHHHhhcCC--CCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 98764311000 12235678889999999998765554443
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4.4e-09 Score=87.63 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCch--hHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++... .++.+...+...+....+|++|.+.. ....... +...+++.+++.++..+++...+....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS--RCLQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 345699999999543 46677777776666766777665433 3333322 236899999999999999988664321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
....++.+..|++.++|.|..+...
T Consensus 196 -----~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 196 -----IDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223567788999999988644333
No 26
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.09 E-value=1.6e-09 Score=84.82 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=92.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
+.+.+.|+|++|+|||+|+..+++. .......+.|++...... .. ....+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~------------------------~~~~~~ 94 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---FV------------------------PEVLEG 94 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---hh------------------------HHHHHH
Confidence 4468999999999999999999883 332333456766643110 00 011111
Q ss_pred HHHHhCCceEEEEEeCCCCc---hhHHHHH-HhccCC--CCCcEEEEEeCchhh---------hhhhccCCCccceeccC
Q 039728 87 LRGHLKDKNYMVVFDDVWKI---DFWGDVE-HALLDN--KKCGRIIVTTRHMNV---------AKACKSSSPVHIHELET 151 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~---~~~~~l~-~~l~~~--~~~~~iliTsR~~~~---------~~~~~~~~~~~~~~l~~ 151 (263)
+ .+ .-++++||++.. ..+++.. ..+... ..+.++|+||+.... .+++... ..+++.+
T Consensus 95 ~----~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g---~~~~l~~ 166 (235)
T PRK08084 95 M----EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG---QIYKLQP 166 (235)
T ss_pred h----hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC---ceeeecC
Confidence 1 11 137889999742 2222222 222211 222468898886422 2222111 5789999
Q ss_pred CCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 152 LPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 152 ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
++.++-.+++++++.... ..-.++.+..|++.+.|....+..+...+
T Consensus 167 ~~~~~~~~~l~~~a~~~~-----~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 167 LSDEEKLQALQLRARLRG-----FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred CCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 999999999987654321 23336788888888888877666665554
No 27
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.09 E-value=1.8e-08 Score=83.50 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=64.8
Q ss_pred ceEEEEEeCCCCch--hHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHhcCCCC
Q 039728 94 KNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSS 170 (263)
Q Consensus 94 ~~~LlvlD~~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~ 170 (263)
.+-++|+||++... ....+...+......+++|+|+.... ....... +...+++.+++.++...++...+....
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~- 201 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRS--RCLPLFFRAPTDDELVDVLESIAEAEG- 201 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcC--CceEEEecCCCHHHHHHHHHHHHHHcC-
Confidence 34589999998543 33445544544455567777765432 2222222 236788999999999999988764331
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 171 GGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
..-.++.+..+++.++|++..+......
T Consensus 202 ----~~~~~~al~~l~~~~~gdlr~l~~~l~~ 229 (337)
T PRK12402 202 ----VDYDDDGLELIAYYAGGDLRKAILTLQT 229 (337)
T ss_pred ----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1233678888999999987765544443
No 28
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.09 E-value=1.9e-09 Score=86.42 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=101.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
.+..+.+++|||+|+||||||+-+.... +.+ ...|+..........-++.++.+-...
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~ts--k~~--SyrfvelSAt~a~t~dvR~ife~aq~~------------------ 216 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTS--KKH--SYRFVELSATNAKTNDVRDIFEQAQNE------------------ 216 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhc--CCC--ceEEEEEeccccchHHHHHHHHHHHHH------------------
Confidence 3567889999999999999999999842 222 144666655444333344444332110
Q ss_pred HHHHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEE--EeCchhhhhhhccCCCccceeccCCCccchHHHHH
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIV--TTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFC 162 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~ili--TsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~ 162 (263)
..+..++.+|++|+++.-..- +....++....|..++| ||-++..........+..++-+++|..++...++.
T Consensus 217 ----~~l~krkTilFiDEiHRFNks-QQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 217 ----KSLTKRKTILFIDEIHRFNKS-QQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred ----HhhhcceeEEEeHHhhhhhhh-hhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 123468899999999843321 23345666666776666 55555443333333445789999999999999988
Q ss_pred HHhc---CCC-CCCCCC----hHHHHHHHHHHHhcCCChh
Q 039728 163 RKAS---GPS-SGGCCP----SELKELSQDILGKCEGLPL 194 (263)
Q Consensus 163 ~~~~---~~~-~~~~~~----~~~~~~~~~i~~~~~g~Pl 194 (263)
+-.. ... +....+ ...+.+++.++..|.|-..
T Consensus 292 raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 292 RAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7322 111 011112 3567788999999998765
No 29
>PRK08727 hypothetical protein; Validated
Probab=99.09 E-value=2.1e-09 Score=84.04 Aligned_cols=155 Identities=16% Similarity=0.062 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
...++|+|++|+|||+|+..+++. .......++|++..+. ...+. ...+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~------~~~~~---------------------~~~~-- 89 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAA------AGRLR---------------------DALE-- 89 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHh------hhhHH---------------------HHHH--
Confidence 456999999999999999999884 3333335667764321 00000 1111
Q ss_pred HHHhCCceEEEEEeCCCCc---hhHH-HHHHhccCC-CCCcEEEEEeCchhh-----hhhhccC-CCccceeccCCCccc
Q 039728 88 RGHLKDKNYMVVFDDVWKI---DFWG-DVEHALLDN-KKCGRIIVTTRHMNV-----AKACKSS-SPVHIHELETLPPNE 156 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~---~~~~-~l~~~l~~~-~~~~~iliTsR~~~~-----~~~~~~~-~~~~~~~l~~ls~~e 156 (263)
.+ ...-+||+||++.. ..+. .+...+... ..+..+|+|++.... ....... .....+++++++.++
T Consensus 90 --~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~ 166 (233)
T PRK08727 90 --AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVA 166 (233)
T ss_pred --HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHH
Confidence 11 12348999999832 1222 222222211 235569999985321 1111111 112578999999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
..+++.+++.... ..-.++.+..|++.++|....+.-+..
T Consensus 167 ~~~iL~~~a~~~~-----l~l~~e~~~~La~~~~rd~r~~l~~L~ 206 (233)
T PRK08727 167 RAAVLRERAQRRG-----LALDEAAIDWLLTHGERELAGLVALLD 206 (233)
T ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998664321 223367788888888877665543333
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=5.1e-09 Score=93.92 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=71.0
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|||+++ +...++.|++.+...+..+++|++|.+. .+...+.. +...+++.+++.++...++.+.+....
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 456799999998 4557788888887766677666665553 33333222 237899999999999999998764321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....++.+..|++.++|.|.-+..+.
T Consensus 196 -----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 196 -----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22335778889999999887444443
No 31
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.6e-08 Score=79.74 Aligned_cols=174 Identities=14% Similarity=0.163 Sum_probs=112.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCc--eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFS--SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
-+.|+|++|+|||+.++.+++. ...... ..+|+++....+....+..++..+... ...+.......+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~-------p~~g~~~~~~~~~l 114 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKILNKLGKV-------PLTGDSSLEILKRL 114 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC-------CCCCCchHHHHHHH
Confidence 3899999999999999999994 443322 268999999999999999999988622 23344556677777
Q ss_pred HHHhC--CceEEEEEeCCCCchhH--HHHHHhccCCCC-CcE--EEEEeCchhhhhhhc----cCCCccceeccCCCccc
Q 039728 88 RGHLK--DKNYMVVFDDVWKIDFW--GDVEHALLDNKK-CGR--IIVTTRHMNVAKACK----SSSPVHIHELETLPPNE 156 (263)
Q Consensus 88 ~~~l~--~~~~LlvlD~~~~~~~~--~~l~~~l~~~~~-~~~--iliTsR~~~~~~~~~----~~~~~~~~~l~~ls~~e 156 (263)
.+.+. ++.+++|||+++....- +-+...+..... .++ +|..+.+........ ..-....+..++.+.+|
T Consensus 115 ~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~e 194 (366)
T COG1474 115 YDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEE 194 (366)
T ss_pred HHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHH
Confidence 77774 46789999999842221 233333332222 333 333444433222222 22222458899999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL 192 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 192 (263)
..+++..++.....+.......-+.+..++...+|-
T Consensus 195 l~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GD 230 (366)
T COG1474 195 LYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGD 230 (366)
T ss_pred HHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCcc
Confidence 999999998755333444445555555566666653
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=2.1e-08 Score=87.40 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=69.8
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCchhhh-hhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHMNVA-KACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++. ....+.+...+...+.+.++|++|.+.... .... .+...+++.+++.++....+.+.+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl--SRCq~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI--SRCLQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH--HhhheeeccCCCHHHHHHHHHHHHHHcC
Confidence 4556899999994 446777887777766677777777654322 2222 3347899999999999999988775431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
.....+.+..|++.++|.+..+..+
T Consensus 195 -----I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 195 -----IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2333577888999999987654433
No 33
>PRK09087 hypothetical protein; Validated
Probab=99.03 E-value=7e-09 Score=80.48 Aligned_cols=145 Identities=13% Similarity=0.058 Sum_probs=89.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+.+.|+|++|+|||+|+..++.. . ...|++... +..+.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~-----~~~~i~~~~------~~~~~~~-------------------------- 84 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S-----DALLIHPNE------IGSDAAN-------------------------- 84 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c-----CCEEecHHH------cchHHHH--------------------------
Confidence 467899999999999999999973 2 122444321 1111111
Q ss_pred HHHhCCceEEEEEeCCCCch-hHHHHHHhccCC-CCCcEEEEEeCchh---------hhhhhccCCCccceeccCCCccc
Q 039728 88 RGHLKDKNYMVVFDDVWKID-FWGDVEHALLDN-KKCGRIIVTTRHMN---------VAKACKSSSPVHIHELETLPPNE 156 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~-~~~~l~~~l~~~-~~~~~iliTsR~~~---------~~~~~~~~~~~~~~~l~~ls~~e 156 (263)
.+.+ -+|++||++... .-..+...+... ..|..+|+|++... ..+++.. ...+++++++.++
T Consensus 85 --~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~---gl~~~l~~pd~e~ 157 (226)
T PRK09087 85 --AAAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKA---ATVVEIGEPDDAL 157 (226)
T ss_pred --hhhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhC---CceeecCCCCHHH
Confidence 1111 278889997422 112233333222 23567888887532 2222222 2689999999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
-.+++++.+.... ..-.++.++.|++.+.|....+..+...|
T Consensus 158 ~~~iL~~~~~~~~-----~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 158 LSQVIFKLFADRQ-----LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999998875431 23336788889999888887777655554
No 34
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.3e-08 Score=85.13 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ....+.+...+...+++..+|++|.+. .+.+.+... ...+.+.+++.++..+++.+..+..
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR--c~~i~f~~~~~~~i~~~L~~~~~~~- 192 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR--CRHVALRTPSVEAVAEVLVRRDGVD- 192 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh--CeEEECCCCCHHHHHHHHHHhcCCC-
Confidence 3445888899984 344566777776666667666665553 444343333 3789999999999999887553322
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAI 196 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l 196 (263)
++.+..++..++|.|...
T Consensus 193 ---------~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 193 ---------PETARRAARASQGHIGRA 210 (394)
T ss_pred ---------HHHHHHHHHHcCCCHHHH
Confidence 356788899999998644
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=2.7e-08 Score=85.85 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=68.7
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ...++.+...+...+....+|+++.. ..+...+.. ....+++.+++.++...++.+.+....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4556889999984 34567777777666556555555543 333333332 236899999999999999998775431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
....++.+..|++.++|.+.-+.....
T Consensus 193 -----i~i~~~Al~~ia~~s~GdlR~aln~Le 219 (504)
T PRK14963 193 -----REAEPEALQLVARLADGAMRDAESLLE 219 (504)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 122357888999999999876544333
No 36
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.02 E-value=5.9e-09 Score=78.96 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
++...-+.++||||+||||||.-+.+ .....|. +.+....... .++.
T Consensus 47 ~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~----------------------------~dl~ 93 (233)
T PF05496_consen 47 GEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKA----------------------------GDLA 93 (233)
T ss_dssp TS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SC----------------------------HHHH
T ss_pred CCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhH----------------------------HHHH
Confidence 44567899999999999999999999 4443331 2222110000 1111
Q ss_pred HHHHHHhCCceEEEEEeCCCCch--hHHHHHHhccCC--------CCC----------cEE-EEEeCchhhhhhhccCCC
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKID--FWGDVEHALLDN--------KKC----------GRI-IVTTRHMNVAKACKSSSP 143 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~--~~~~l~~~l~~~--------~~~----------~~i-liTsR~~~~~~~~~~~~~ 143 (263)
..+ ..++ ++-+|++|+++... .-+.+.....+. .++ ..+ =-|||.............
T Consensus 94 ~il-~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFg 171 (233)
T PF05496_consen 94 AIL-TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFG 171 (233)
T ss_dssp HHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSS
T ss_pred HHH-HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcc
Confidence 112 1222 34577789999533 222233222221 111 122 247776555444443321
Q ss_pred ccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhcc
Q 039728 144 VHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLST 205 (263)
Q Consensus 144 ~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~ 205 (263)
-...++..+.+|...++.+.+..-. ....++.+.+|++.+.|-|.-..-+...+++
T Consensus 172 -i~~~l~~Y~~~el~~Iv~r~a~~l~-----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 172 -IVLRLEFYSEEELAKIVKRSARILN-----IEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp -EEEE----THHHHHHHHHHCCHCTT------EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred -eecchhcCCHHHHHHHHHHHHHHhC-----CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 2357999999999999987765432 4455788999999999999887777776654
No 37
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.4e-08 Score=87.92 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=66.9
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++ +....+.++..+...+..+.+|++|.+ ..+..... ++...+++.+++.++....+.+.+....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~--SRc~~~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTIL--SRCIQLHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHH--HheeeEEeCCCCHHHHHHHHHHHHHHcC
Confidence 456699999998 444677788777776666666655543 33332322 2337899999999999988887654321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChh-HHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPL-AIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~ 199 (263)
....+..+..|++.++|.+. ++..+
T Consensus 196 -----i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 196 -----INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22335677889999999775 44444
No 38
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=9.6e-09 Score=89.35 Aligned_cols=100 Identities=10% Similarity=0.100 Sum_probs=68.7
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|||+++ +....+.|++.+.....++++|++|.+ ..+...+.+. ...+.+..++.++..+.+.+.+....
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR--Cq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH--HHhcccCCCChHHHHHHHHHHHHHcC
Confidence 455689999999 445677888877776666766655554 4444333332 27899999999999999988764331
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
.....+.++.|++.++|.|.-...+
T Consensus 201 -----i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 201 -----IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1222456788999999998744443
No 39
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.00 E-value=2.6e-09 Score=83.42 Aligned_cols=155 Identities=13% Similarity=0.072 Sum_probs=90.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.++|+|++|+|||+||..+++. ....-...++++...... . +
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~~---~-------~---------------------- 85 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPLL---A-------F---------------------- 85 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhHH---H-------H----------------------
Confidence 34578899999999999999999983 322222355665543210 0 0
Q ss_pred HHHHHhCCceEEEEEeCCCCch--hHHHHHHhccCC-CCCc-EEEEEeCchhhhhhh----ccC-CCccceeccCCCccc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID--FWGDVEHALLDN-KKCG-RIIVTTRHMNVAKAC----KSS-SPVHIHELETLPPNE 156 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~--~~~~l~~~l~~~-~~~~-~iliTsR~~~~~~~~----~~~-~~~~~~~l~~ls~~e 156 (263)
... ...-++|+||++... ....+...+... ..+. .+++|++........ ... .....+.+++++.++
T Consensus 86 ---~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 86 ---DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred ---hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 001 123478899998432 223333333221 1233 366666643211110 001 112578999999988
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
-..++.+...... ..-.++.+..+++.+.|++..+..+...+
T Consensus 162 ~~~~l~~~~~~~~-----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 162 KIAALKAAAAERG-----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8787776442211 22235788888899999999888777765
No 40
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.5e-08 Score=85.66 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=68.9
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +...++.++..+...+....+|++|.+ ..+...+..+ .+.+.+.+++.++..+++.+.+....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR--Cq~~~f~~ls~~~i~~~L~~i~~~Eg 197 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR--CQDFIFKKVPLSVLQDYSEKLCKIEN 197 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh--hheeeecCCCHHHHHHHHHHHHHHcC
Confidence 456799999999 455677887777665556555544444 4443343333 26799999999999999988865431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....++.+..|++.++|.+.-.-.+.
T Consensus 198 -----i~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 198 -----VQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred -----CCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 22335778899999999986444443
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.99 E-value=6.1e-08 Score=79.68 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEe--CCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTV--GKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
..+.++|+|++|+|||+++..+++..... .+. ..++.. ...... ..+...+..+.....
T Consensus 37 ~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~-~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~---------------- 97 (319)
T PRK00440 37 NMPHLLFAGPPGTGKTTAALALARELYGE-DWR-ENFLELNASDERGI-DVIRNKIKEFARTAP---------------- 97 (319)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccc-cceEEeccccccch-HHHHHHHHHHHhcCC----------------
Confidence 34557999999999999999998842111 121 112222 111111 111122221111000
Q ss_pred HHHHHHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHH
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLF 161 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll 161 (263)
.....+-++++|+++.. .....+...+......+.+|+++.... ....... ....+++.+++.++...++
T Consensus 98 -----~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~ei~~~l 170 (319)
T PRK00440 98 -----VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEAVAERL 170 (319)
T ss_pred -----CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHHHHHHH
Confidence 00123468999999843 234456555555555667777665432 2222211 2257899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 162 CRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
...+.... ..-.++.+..+++.++|.+.-+.....
T Consensus 171 ~~~~~~~~-----~~i~~~al~~l~~~~~gd~r~~~~~l~ 205 (319)
T PRK00440 171 RYIAENEG-----IEITDDALEAIYYVSEGDMRKAINALQ 205 (319)
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88775431 122356788899999999876444433
No 42
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.5e-08 Score=89.12 Aligned_cols=101 Identities=9% Similarity=0.045 Sum_probs=69.8
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +....+.|++.+...+..+++|++|.+ ..+...+.+. ...+.+.+++.++...++...+....
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR--C~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CLQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh--heEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 456699999999 455778888888777767766665554 3333333332 37899999999999999988763321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....+..+..|++.++|.+.-+..+.
T Consensus 196 -----i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 196 -----IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12235677889999999887444433
No 43
>PLN03025 replication factor C subunit; Provisional
Probab=98.99 E-value=1.7e-08 Score=82.84 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
+.+-+.++||+|+||||+|..+++... ...+. ..+-++..+... .+.++..+..+.....
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~-~~~vr~~i~~~~~~~~----------------- 93 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRG-IDVVRNKIKMFAQKKV----------------- 93 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeeccccccc-HHHHHHHHHHHHhccc-----------------
Confidence 445578999999999999999988421 22222 111112111111 1122222222211100
Q ss_pred HHHHHhCCceEEEEEeCCCCch--hHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHH
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFC 162 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~ 162 (263)
....++.-++|+|++|... ..+.+...+...+..+++++++... ......... ...+++.+++.++....+.
T Consensus 94 ---~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR--c~~i~f~~l~~~~l~~~L~ 168 (319)
T PLN03025 94 ---TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR--CAIVRFSRLSDQEILGRLM 168 (319)
T ss_pred ---cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh--hhcccCCCCCHHHHHHHHH
Confidence 0001345689999999533 3444554454434556677766543 222222222 2689999999999999998
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 163 RKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
..+.... ..-.++.+..|++.++|....+...
T Consensus 169 ~i~~~eg-----i~i~~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 169 KVVEAEK-----VPYVPEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred HHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8775431 1222567888999999887544433
No 44
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.98 E-value=1e-08 Score=79.22 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
....+.|+|++|+|||.|+.++++.......-..++|++.. .+...+...+... . ...
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~~------------~----~~~ 90 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE------EFIREFADALRDG------------E----IEE 90 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH------HHHHHHHHHHHTT------------S----HHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH------HHHHHHHHHHHcc------------c----chh
Confidence 34568999999999999999999842211122245566543 3444444433221 1 122
Q ss_pred HHHHhCCceEEEEEeCCCCch---hHH-HHHHhccCC-CCCcEEEEEeCchh---------hhhhhccCCCccceeccCC
Q 039728 87 LRGHLKDKNYMVVFDDVWKID---FWG-DVEHALLDN-KKCGRIIVTTRHMN---------VAKACKSSSPVHIHELETL 152 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~---~~~-~l~~~l~~~-~~~~~iliTsR~~~---------~~~~~~~~~~~~~~~l~~l 152 (263)
++..+.+ -=+|++||++... .++ .+...+... ..|.++|+|++... ..++.... -.+++.+.
T Consensus 91 ~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G---l~~~l~~p 166 (219)
T PF00308_consen 91 FKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG---LVVELQPP 166 (219)
T ss_dssp HHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS---EEEEE---
T ss_pred hhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc---chhhcCCC
Confidence 3344432 3378899998422 222 222222211 23568999996532 22222222 57999999
Q ss_pred CccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 153 PPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 153 s~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
+.++..+++++.+.... ..-.++.++.|++.+.+....+.-+...|
T Consensus 167 d~~~r~~il~~~a~~~~-----~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERG-----IELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp -HHHHHHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhC-----CCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99999999998875442 23446788888888877777666665554
No 45
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.98 E-value=7.3e-08 Score=82.28 Aligned_cols=211 Identities=13% Similarity=0.078 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
...++|+|++|+|||+|+.++++..........++|++. .++...+...+.... .....+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~--------------~~~~~~ 200 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH--------------KEIEQF 200 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh--------------hHHHHH
Confidence 356899999999999999999883221112223455544 344455554442210 112233
Q ss_pred HHHhCCceEEEEEeCCCCch---h-HHHHHHhccCC-CCCcEEEEEeCchh-hhhhhc----cC-CCccceeccCCCccc
Q 039728 88 RGHLKDKNYMVVFDDVWKID---F-WGDVEHALLDN-KKCGRIIVTTRHMN-VAKACK----SS-SPVHIHELETLPPNE 156 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~---~-~~~l~~~l~~~-~~~~~iliTsR~~~-~~~~~~----~~-~~~~~~~l~~ls~~e 156 (263)
+..++ ..-+||+||++... . .+.+...+... ..+..||+||.... ...... .. ...-.+.+.+++.++
T Consensus 201 ~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 201 KNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred HHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 33333 23478899997322 2 22333222222 22446888876432 211111 10 011467899999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc-----c---CCCCHHHHHHHHHHhccccCCCC
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS-----T---KNRVVSEWKKLFDRLGSILGSDP 228 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~-----~---~~~~~~~~~~~~~~~~~~~~~~~ 228 (263)
..+++++.+...... ....++.+..|++.+.|.|..+.-+...+. . ...+.+.-+.++.++........
T Consensus 280 r~~iL~~~~~~~gl~---~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~~~~~ 356 (450)
T PRK14087 280 ATAIIKKEIKNQNIK---QEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSKLGIL 356 (450)
T ss_pred HHHHHHHHHHhcCCC---CCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccccccCCC
Confidence 999999887543100 134468899999999999998887776652 1 23345666666665532111112
Q ss_pred CchhHHHHHHHhhc
Q 039728 229 HLKDCNRVLSEGYH 242 (263)
Q Consensus 229 ~~~~~~~~l~~s~~ 242 (263)
..+.+.......|+
T Consensus 357 t~~~I~~~Va~~~~ 370 (450)
T PRK14087 357 NVKKIKEVVSEKYG 370 (450)
T ss_pred CHHHHHHHHHHHcC
Confidence 33555555555554
No 46
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.5e-08 Score=83.62 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++. ....+.++..+...+.+..+|++| +.........+ +...+.+.+++.++..+++.......
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQ- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHh--hccEEEecCCCHHHHHHHHHHhhccc-
Confidence 4556899999994 445677777777665556555444 44444444433 33789999999999999999843211
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
. ..++.+..+++.++|.|.....+.
T Consensus 217 -----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 -----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 224557789999999998655444
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=3.2e-08 Score=80.96 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=96.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCc---ccccCCcee-EEEEe-CCCCCHHHHHHHHHHHHhhccCCCCcccccccc
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNND---GLKTHFSSR-AWVTV-GKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~---~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 79 (263)
+.-.....++|+.|+|||++|..++... .....++.. .|... +..... +..++++..+...
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v-~~ir~~~~~~~~~------------- 88 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGV-DDIRNIIEEVNKK------------- 88 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCH-HHHHHHHHHHhcC-------------
Confidence 3445677899999999999999987732 111122222 23221 111121 1122333322111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccc
Q 039728 80 EMELITTLRGHLKDKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNE 156 (263)
Q Consensus 80 ~~~~~~~~~~~l~~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e 156 (263)
-..+++-++|+|+++ +....+.+...+...+.++.+|++|.+.. +.+...+ +...+.+.+++.++
T Consensus 89 ----------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~~~~~~~ 156 (313)
T PRK05564 89 ----------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS--RCQIYKLNRLSKEE 156 (313)
T ss_pred ----------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh--hceeeeCCCcCHHH
Confidence 112345577788877 45567889989988888888887776543 3233332 23789999999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHH
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIV 197 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 197 (263)
....+.+...+.. ++.+..++..++|.|.-+.
T Consensus 157 ~~~~l~~~~~~~~---------~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 157 IEKFISYKYNDIK---------EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHHhcCCC---------HHHHHHHHHHcCCCHHHHH
Confidence 9998887653221 3456778888899886443
No 48
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=3.2e-08 Score=85.14 Aligned_cols=100 Identities=19% Similarity=0.135 Sum_probs=68.1
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEE-EeCchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIV-TTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~ili-TsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ...++.+...+...++.+.+|+ |++...+....... ...+++.+++.++...++.+.+....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR--c~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR--CQRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc--ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4566899999984 4457778777776666666555 44444444433332 36799999999999999998885431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
....++.+..|++.++|.+.-+...
T Consensus 205 -----i~ie~eAL~~Ia~~s~GslR~al~~ 229 (507)
T PRK06645 205 -----LKTDIEALRIIAYKSEGSARDAVSI 229 (507)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2223567788999999987654333
No 49
>PRK05642 DNA replication initiation factor; Validated
Probab=98.96 E-value=6.7e-09 Score=81.20 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+.+.|+|++|+|||.|+..+++. .......++|++..+-. .. ... +
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~~~------~~---------------------~~~----~ 91 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAELL------DR---------------------GPE----L 91 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHHHH------hh---------------------hHH----H
Confidence 367899999999999999999873 32223356677754211 00 001 1
Q ss_pred HHHhCCceEEEEEeCCCCc---hhHHH-HHHhccCC-CCCcEEEEEeCchhhhhhh-cc--CCC---ccceeccCCCccc
Q 039728 88 RGHLKDKNYMVVFDDVWKI---DFWGD-VEHALLDN-KKCGRIIVTTRHMNVAKAC-KS--SSP---VHIHELETLPPNE 156 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~---~~~~~-l~~~l~~~-~~~~~iliTsR~~~~~~~~-~~--~~~---~~~~~l~~ls~~e 156 (263)
.+.+.+-. +||+||++.. ..+++ +...+... ..|..+|+|++.....-.. .. .++ ...+++.+++.++
T Consensus 92 ~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 92 LDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred HHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 22222222 6789999732 23332 33333222 2356788888754321111 00 011 1468899999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
..++++.++.... ..-.++.+..|++.+.|....+..+...|
T Consensus 171 ~~~il~~ka~~~~-----~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 171 KLRALQLRASRRG-----LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999986553221 12225788888888888877666666555
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.94 E-value=2.8e-08 Score=86.02 Aligned_cols=163 Identities=14% Similarity=0.125 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+.++|+|++|+||||+|..+++. .. ++ .+.++..+... ...+..++......
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~-~~~i~~~i~~~~~~--------------------- 91 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRT-ADVIERVAGEAATS--------------------- 91 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEccccccc-HHHHHHHHHHhhcc---------------------
Confidence 688999999999999999999984 22 22 23334333221 22222222221110
Q ss_pred HHHhCCceEEEEEeCCCCch------hHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHH
Q 039728 88 RGHLKDKNYMVVFDDVWKID------FWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLF 161 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~------~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll 161 (263)
......++-+||+|+++... .+..+...+.. .++.+|+|+.+...............+.+.+++.++....+
T Consensus 92 ~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L 169 (482)
T PRK04195 92 GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVL 169 (482)
T ss_pred CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHH
Confidence 00011356789999998532 24555555442 23456666654322111011122367999999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q 039728 162 CRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS 204 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 204 (263)
.+.+.... ....++.+..|++.++|....+......+.
T Consensus 170 ~~i~~~eg-----i~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 170 KRICRKEG-----IECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 88774431 112257788899999988776554444443
No 51
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=3.6e-08 Score=84.21 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=69.7
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +...++.+...+...++.+++|++|.+ ..+....... ...+++.+++.++....+.+.+....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR--c~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR--CQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh--heeeecccccHHHHHHHHHHHHHHcC
Confidence 355689999998 445677888888877777766665544 3443333332 37899999999999999998775431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....++.+..|++.++|.+..+....
T Consensus 193 -----i~i~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 193 -----IEHDEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22335677889999999886444333
No 52
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=4.7e-08 Score=81.07 Aligned_cols=97 Identities=9% Similarity=0.084 Sum_probs=68.3
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++.++|+|+++ +....+.+.+.+...+.+..+|++|.+. .+..... .+...+.+.+++.++..+++........
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~--SRc~~i~l~~l~~~~i~~~L~~~~~~~~ 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIR--SRCRKLRLRPLAPEDVIDALAAAGPDLP 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhh--ccceEEECCCCCHHHHHHHHHHhcccCC
Confidence 456799999998 4556777888877766667677766665 3333332 3347899999999999999998753321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
......++..++|+|.....+.
T Consensus 218 ---------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 218 ---------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ---------HHHHHHHHHHcCCCHHHHHHHh
Confidence 2333778999999998554443
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=4.7e-08 Score=85.97 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCch--hHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++... ..+.+++.+...+..+++|++|.+. .+..... .+...+.+.+++.++....+.+.+....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 455689999998533 4667777777666667777766543 2222222 2226788999999999999988876432
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....++.+..|++.++|.+.-+..+.
T Consensus 196 -----i~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 196 -----IAYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred -----CCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 22335788899999999986554444
No 54
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.93 E-value=1.5e-07 Score=79.93 Aligned_cols=204 Identities=13% Similarity=0.110 Sum_probs=112.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCC--ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHF--SSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...++|+|++|+|||+|+.++++. ..... ..++|++.. .+...+...+... .....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------------~~~~~-- 193 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSSE------KFTNDFVNALRNN------------KMEEF-- 193 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEHH------HHHHHHHHHHHcC------------CHHHH--
Confidence 356899999999999999999984 33222 245566432 3333333333211 11122
Q ss_pred HHHHHhCCceEEEEEeCCCCch---h-HHHHHHhccCC-CCCcEEEEEeCch-hhhhh----hccC-CCccceeccCCCc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID---F-WGDVEHALLDN-KKCGRIIVTTRHM-NVAKA----CKSS-SPVHIHELETLPP 154 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~---~-~~~l~~~l~~~-~~~~~iliTsR~~-~~~~~----~~~~-~~~~~~~l~~ls~ 154 (263)
.+.+.+ .-+|+|||++... . .+.+...+... ..+..+|+|+... ..... .... .....+.+.+.+.
T Consensus 194 --~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 194 --KEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred --HHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 222222 2388899998421 1 12233222221 2345677777642 22111 1111 1114688999999
Q ss_pred cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc------cCCCCHHHHHHHHHHhccccCCCC
Q 039728 155 NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS------TKNRVVSEWKKLFDRLGSILGSDP 228 (263)
Q Consensus 155 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~ 228 (263)
++-.+++.+.+.... ....++.+..|++.+.|....+.-+...|. ....+.......+...........
T Consensus 271 ~~r~~il~~~~~~~~-----~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~~~~~~i 345 (405)
T TIGR00362 271 ETRLAILQKKAEEEG-----LELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAKKKEI 345 (405)
T ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCC
Confidence 999999998875431 223368889999999998886655544432 233455667777765422211223
Q ss_pred CchhHHHHHHHhh
Q 039728 229 HLKDCNRVLSEGY 241 (263)
Q Consensus 229 ~~~~~~~~l~~s~ 241 (263)
..+.+..+....|
T Consensus 346 t~~~I~~~Va~~~ 358 (405)
T TIGR00362 346 TIENIQEVVAKYY 358 (405)
T ss_pred CHHHHHHHHHHHc
Confidence 3345555555444
No 55
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=4.5e-08 Score=80.03 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=64.8
Q ss_pred ceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCC
Q 039728 94 KNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSS 170 (263)
Q Consensus 94 ~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~ 170 (263)
++-++|+|+++ +....+.+++.+...+.++.+|++|.+. .+.+...+. ...+.+.+++.+++.+.+........
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR--c~~~~~~~~~~~~~~~~L~~~~~~~~- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR--CQQQACPLPSNEESLQWLQQALPESD- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh--ceeeeCCCcCHHHHHHHHHHhcccCC-
Confidence 33455779998 4556778888888777777777777664 444444433 37899999999999999987642221
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhHHH
Q 039728 171 GGCCPSELKELSQDILGKCEGLPLAIV 197 (263)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 197 (263)
++.+..++..++|.|....
T Consensus 183 --------~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 183 --------ERERIELLTLAGGSPLRAL 201 (328)
T ss_pred --------hHHHHHHHHHcCCCHHHHH
Confidence 3455677888999987443
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=2.7e-08 Score=85.99 Aligned_cols=101 Identities=11% Similarity=0.040 Sum_probs=67.3
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +....+.+...+...+..+++|++|.+ ......... +...+++.+++.++....+...+....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 345689999999 455677888888777777767665544 333322222 236789999999998888877764431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....++.+..|++.++|.+.-+....
T Consensus 196 -----i~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 196 -----VEFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred -----CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 12234667888999999886544433
No 57
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.90 E-value=2e-07 Score=83.64 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=86.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
+..+.++|+|++|+||||+|+.+++ .....| +.++.. ........ ....
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f---~~lna~--~~~i~dir------------------------~~i~ 98 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIAN--HTRAHF---SSLNAV--LAGVKDLR------------------------AEVD 98 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH--HhcCcc---eeehhh--hhhhHHHH------------------------HHHH
Confidence 3456789999999999999999998 333232 111111 00000001 1111
Q ss_pred HHHHHh--CCceEEEEEeCCCCch--hHHHHHHhccCCCCCcEEEEEe--Cchh--hhhhhccCCCccceeccCCCccch
Q 039728 86 TLRGHL--KDKNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIVTT--RHMN--VAKACKSSSPVHIHELETLPPNEA 157 (263)
Q Consensus 86 ~~~~~l--~~~~~LlvlD~~~~~~--~~~~l~~~l~~~~~~~~iliTs--R~~~--~~~~~~~~~~~~~~~l~~ls~~e~ 157 (263)
.....+ .+++.+||||+++... ..+.+...+. .+..++|++ .+.. +..... ++...+.+++++.++.
T Consensus 99 ~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~--SR~~v~~l~pLs~edi 173 (725)
T PRK13341 99 RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV--SRSRLFRLKSLSDEDL 173 (725)
T ss_pred HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh--ccccceecCCCCHHHH
Confidence 111111 2356789999998533 3334443332 244445433 3321 112221 2236799999999999
Q ss_pred HHHHHHHhcCCC--CCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 158 WKLFCRKASGPS--SGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 158 ~~ll~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
..++.+.+.... .........++.+..|++.+.|+..-+.-+..
T Consensus 174 ~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le 219 (725)
T PRK13341 174 HQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALE 219 (725)
T ss_pred HHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999988764100 00111233356778899999988664444433
No 58
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.90 E-value=1.5e-07 Score=80.27 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=106.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCC--ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHF--SSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...++|+|++|+|||+|+..+++. ..... ..++|++. .+++..+...+... ....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------------~~~~--- 186 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------------KLNE--- 186 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------------cHHH---
Confidence 456999999999999999999984 33322 24567654 33444444443211 1112
Q ss_pred HHHHHhCCceEEEEEeCCCCc---hhH-HHHHHhccCC-CCCcEEEEEeC-chhhhhhh----ccC-CCccceeccCCCc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKI---DFW-GDVEHALLDN-KKCGRIIVTTR-HMNVAKAC----KSS-SPVHIHELETLPP 154 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~---~~~-~~l~~~l~~~-~~~~~iliTsR-~~~~~~~~----~~~-~~~~~~~l~~ls~ 154 (263)
+...+....-+|++||++.. ... .++...+... ..+..+|+||. .+...... ... .....+++++.+.
T Consensus 187 -f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 187 -FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred -HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 22233234558999999832 111 2232222211 22446888774 33222221 111 1114788999999
Q ss_pred cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh------ccCCCCHHHHHHHHHHh
Q 039728 155 NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL------STKNRVVSEWKKLFDRL 220 (263)
Q Consensus 155 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l------~~~~~~~~~~~~~~~~~ 220 (263)
+.-..++++.+.... ..-.++.+..|++.+.|+...+.-+...| ...+.+.....+.+.++
T Consensus 266 e~r~~IL~~~~~~~~-----~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 266 ETRKKIARKMLEIEH-----GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHHhcC-----CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999998875321 22236788999999998877666555444 23344566666677655
No 59
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=4.4e-08 Score=85.94 Aligned_cols=99 Identities=9% Similarity=0.106 Sum_probs=67.7
Q ss_pred ceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeC-chhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCC
Q 039728 94 KNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTR-HMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSS 170 (263)
Q Consensus 94 ~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR-~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~ 170 (263)
+.-++|||+++ +...++.++..+...+..+++|++|. ...+...... +...+++.+++.++....+.+.+....
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~eg- 200 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAEN- 200 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcC-
Confidence 44589999999 45567778877777666666665554 3333333322 237899999999999999988765431
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 171 GGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
....++.+..|++.++|.+..+..+
T Consensus 201 ----i~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 201 ----VPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred ----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2223567888999999987655444
No 60
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.90 E-value=5.5e-08 Score=83.56 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=114.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCC--ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHF--SSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
....++|+|++|+|||+|+..+++. ....+ ..++|++... +...+...+... ..
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~------------~~---- 202 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSEK------FTNDFVNALRNN------------TM---- 202 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHHH------HHHHHHHHHHcC------------cH----
Confidence 3467899999999999999999984 33332 2345655432 233333333110 11
Q ss_pred HHHHHHhCCceEEEEEeCCCCch----hHHHHHHhccCC-CCCcEEEEEeCchh-hh----hhhccC-CCccceeccCCC
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKID----FWGDVEHALLDN-KKCGRIIVTTRHMN-VA----KACKSS-SPVHIHELETLP 153 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~----~~~~l~~~l~~~-~~~~~iliTsR~~~-~~----~~~~~~-~~~~~~~l~~ls 153 (263)
..+.+.+. ..-+|+|||++... ..+.+...+... ..+..+++|+.... .. ...... .....+++.+.+
T Consensus 203 ~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd 281 (450)
T PRK00149 203 EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPD 281 (450)
T ss_pred HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCC
Confidence 12222333 24488999997321 122333322211 22445777776532 11 111111 112478999999
Q ss_pred ccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc------cCCCCHHHHHHHHHHhccccCCC
Q 039728 154 PNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS------TKNRVVSEWKKLFDRLGSILGSD 227 (263)
Q Consensus 154 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~ 227 (263)
.++...++++.+.... ..-.++.+..|++.+.|....+.-+...|. ....+....++.+..+.......
T Consensus 282 ~~~r~~il~~~~~~~~-----~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~ 356 (450)
T PRK00149 282 LETRIAILKKKAEEEG-----IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKK 356 (450)
T ss_pred HHHHHHHHHHHHHHcC-----CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCC
Confidence 9999999999875421 223367899999999999876555444432 23345667777777652211122
Q ss_pred CCchhHHHHHHHhhc
Q 039728 228 PHLKDCNRVLSEGYH 242 (263)
Q Consensus 228 ~~~~~~~~~l~~s~~ 242 (263)
...+.+.......|+
T Consensus 357 ~~~~~i~~~v~~~~~ 371 (450)
T PRK00149 357 ITIENIQKVVAEYYN 371 (450)
T ss_pred CCHHHHHHHHHHHcC
Confidence 233455555554443
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=8.3e-08 Score=82.18 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++.. ...+.+...+...+....+|++|.+ ..+...... +.+.+++.+++.++....+.+.+....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS--RCQVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc--CcEEEEECCccHHHHHHHHHHHHHHcC
Confidence 45569999999843 3455666666655545555444443 333333333 347899999999999999988774321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHHHh
Q 039728 170 SGGCCPSELKELSQDILGKCEGL-PLAIVAVGGLL 203 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~~l 203 (263)
....++.+..|++.++|. +.++..+-...
T Consensus 194 -----i~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 194 -----IEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred -----CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 122256778888887665 56666665544
No 62
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.89 E-value=9.6e-08 Score=79.71 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=67.9
Q ss_pred ceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHhcCCCC
Q 039728 94 KNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSS 170 (263)
Q Consensus 94 ~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~ 170 (263)
++-++|+|+++.. ...+.+...+...+..+.+|++|.+.. ........ ...+++.+++.++..+++...+....
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~~~~~~l~~~l~~~~~~~g- 193 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR--CQRFDFKRIPLEDIVERLKKILDKEG- 193 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh--eeEEEcCCCCHHHHHHHHHHHHHHcC-
Confidence 4458889999854 456677777766556666666665443 33333322 36788999999999999988764331
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 171 GGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
....++.+..+++.++|.|..+......
T Consensus 194 ----~~i~~~a~~~l~~~~~g~~~~a~~~lek 221 (355)
T TIGR02397 194 ----IKIEDEALELIARAADGSLRDALSLLDQ 221 (355)
T ss_pred ----CCCCHHHHHHHHHHcCCChHHHHHHHHH
Confidence 1122578888999999998766555443
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=6.5e-08 Score=87.78 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=68.1
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|||+++ +....+.|++.+.+....+.+|++|.+ ..+...+... .+.+++..++.++..+++.+.+....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR--c~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR--THHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--eeEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 455688999998 455677888888877777766655544 3444433333 37899999999999999988764321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
.......+..|++.++|.+..+..+
T Consensus 197 -----v~id~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 197 -----VPVEPGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223566788899999988544333
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=9.8e-08 Score=83.05 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ....+.+...+...+..+.+|++|.+ ......... +...+++.+++.++....+.+.+....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 4556899999994 34577788888776666766665544 333222221 227899999999999999988764321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAI 196 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l 196 (263)
....++.+..|++.++|.+.-+
T Consensus 196 -----i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 196 -----IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHH
Confidence 1223567788999999987633
No 65
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.4e-07 Score=82.58 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=67.6
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +....+.|+..+...+..+.+|++| ....+...+... ...+++.+++.++..+++.+.+....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR--c~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR--THHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh--ceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 445688999998 4556778888888776666666555 444444443333 37899999999999999988765431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChh-HHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPL-AIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~ 199 (263)
....++.+..|++.++|.+. +++++
T Consensus 195 -----i~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 195 -----VVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12224677888889999875 33333
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.86 E-value=3e-08 Score=71.61 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.+.|+|++|+|||++++.+++. .......+++++................ . .....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~ 76 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGH-F------------------LVRLL 76 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhh-h------------------hHhHH
Confidence 4678999999999999999999984 3222234556655443221111110000 0 00011
Q ss_pred HHHHhCCceEEEEEeCCCCc--hhHHHHHHhccCC------CCCcEEEEEeCchh
Q 039728 87 LRGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDN------KKCGRIIVTTRHMN 133 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~------~~~~~iliTsR~~~ 133 (263)
.......++.++|+||++.. .....+...+... ..+..+|+|+....
T Consensus 77 ~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 11122346789999999853 2222333333322 35677888887654
No 67
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=5.1e-07 Score=76.96 Aligned_cols=205 Identities=15% Similarity=0.078 Sum_probs=106.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
...+.|+|++|+|||+|+..+++. .......++|++. ..+...+...+... . ...+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~------------~----~~~f 196 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG------------E----MQRF 196 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc------------h----HHHH
Confidence 356899999999999999999984 3322234556553 22333333333110 0 1123
Q ss_pred HHHhCCceEEEEEeCCCCch----hHHHHHHhccCC-CCCcEEEEEeCch-hhh----hhhccCC-CccceeccCCCccc
Q 039728 88 RGHLKDKNYMVVFDDVWKID----FWGDVEHALLDN-KKCGRIIVTTRHM-NVA----KACKSSS-PVHIHELETLPPNE 156 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~----~~~~l~~~l~~~-~~~~~iliTsR~~-~~~----~~~~~~~-~~~~~~l~~ls~~e 156 (263)
+..+. ..-+|++||++... ..+++...+... ..+..+|+||... ... ....... ....+++.+++.++
T Consensus 197 ~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 197 RQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred HHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 33333 33488899987421 122222222111 2345688887542 221 1111111 11578899999999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh---------ccCCCCHHHHHHHHHHhccccCC-
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL---------STKNRVVSEWKKLFDRLGSILGS- 226 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~- 226 (263)
...++++.+.... ..-.++.+..|++.+.++-..+.-+...+ .....+.+..++.+.++......
T Consensus 276 r~~iL~~k~~~~~-----~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 350 (445)
T PRK12422 276 LRSFLERKAEALS-----IRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEAAESV 350 (445)
T ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhcccCC
Confidence 9999998875431 22235677777777776653333222222 22334566666666654211111
Q ss_pred CCCchhHHHHHHHhhc
Q 039728 227 DPHLKDCNRVLSEGYH 242 (263)
Q Consensus 227 ~~~~~~~~~~l~~s~~ 242 (263)
....+.+.......|+
T Consensus 351 ~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 351 RLTPSKIIRAVAQYYG 366 (445)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 1233455555544444
No 68
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.83 E-value=3.7e-07 Score=72.49 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=103.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCC------ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCcccccccc
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHF------SSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 79 (263)
...+.+.|+|++|.|||+++++++.. +...+ --++++......+...++..++..++....... .
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~-------~ 129 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD-------R 129 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC-------C
Confidence 45578999999999999999999873 22211 135677788888999999999999987643221 2
Q ss_pred HHHHHHHHHHHhCC-ceEEEEEeCCCCc-----hhHHHHHH---hccCCCCCcEEEEEeCchhhhhhhc--cCCCcccee
Q 039728 80 EMELITTLRGHLKD-KNYMVVFDDVWKI-----DFWGDVEH---ALLDNKKCGRIIVTTRHMNVAKACK--SSSPVHIHE 148 (263)
Q Consensus 80 ~~~~~~~~~~~l~~-~~~LlvlD~~~~~-----~~~~~l~~---~l~~~~~~~~iliTsR~~~~~~~~~--~~~~~~~~~ 148 (263)
...........++. +.-+||+|++++. ....+++. .+.+.-.-+-|.+-|+.....-... ...++..+.
T Consensus 130 ~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~ 209 (302)
T PF05621_consen 130 VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFE 209 (302)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCcc
Confidence 22223333333332 3448999999841 12222222 3322222223455555432221110 113345677
Q ss_pred ccCCCcc-chHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHH
Q 039728 149 LETLPPN-EAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVA 198 (263)
Q Consensus 149 l~~ls~~-e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 198 (263)
++....+ |...|+...-..-.......-..++.+..|+..++|+.--+.-
T Consensus 210 Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 210 LPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 7877665 4444443332111001111233467889999999998754433
No 69
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=1.3e-07 Score=82.21 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=64.4
Q ss_pred eEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeC-chhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCCC
Q 039728 95 NYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTR-HMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSSG 171 (263)
Q Consensus 95 ~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR-~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~ 171 (263)
+-++|+|+++. ....+.+...+...+....+|++|. ...+......+ ...+++.+++.++....+...+....
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR--cq~ieF~~Ls~~eL~~~L~~il~keg-- 195 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR--CQRYNFKKLNNSELQELLKSIAKKEK-- 195 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh--hhhcccCCCCHHHHHHHHHHHHHHcC--
Confidence 34799999984 4456677777766665665555554 33333333322 37899999999999999998764321
Q ss_pred CCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 172 GCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 172 ~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....++.+..+++.++|.+..+..+.
T Consensus 196 ---i~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 196 ---IKIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred ---CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 11225678889999999776433333
No 70
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.81 E-value=5.4e-07 Score=78.59 Aligned_cols=182 Identities=12% Similarity=0.089 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccC--CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTH--FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..++|+|.+|+|||.|+..+++. .... ...++|++.. .++..+...+... . ...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yitae------ef~~el~~al~~~------------~----~~~ 370 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSSE------EFTNEFINSIRDG------------K----GDS 370 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHhc------------c----HHH
Confidence 45899999999999999999994 3322 2245566543 2333333332110 0 112
Q ss_pred HHHHhCCceEEEEEeCCCCc---hhH-HHHHHhccCC-CCCcEEEEEeCchh-----hhhhhccC-CCccceeccCCCcc
Q 039728 87 LRGHLKDKNYMVVFDDVWKI---DFW-GDVEHALLDN-KKCGRIIVTTRHMN-----VAKACKSS-SPVHIHELETLPPN 155 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~---~~~-~~l~~~l~~~-~~~~~iliTsR~~~-----~~~~~~~~-~~~~~~~l~~ls~~ 155 (263)
+++.+.+ .=+|||||++.. ..+ +++...+... ..+..|||||+... ....+... ...-.+++...+.+
T Consensus 371 f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~E 449 (617)
T PRK14086 371 FRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELE 449 (617)
T ss_pred HHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHH
Confidence 2233332 347889999732 222 2222222222 22456888887631 11111111 11247899999999
Q ss_pred chHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc------cCCCCHHHHHHHHHHh
Q 039728 156 EAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS------TKNRVVSEWKKLFDRL 220 (263)
Q Consensus 156 e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~------~~~~~~~~~~~~~~~~ 220 (263)
.-.++|++.+.... ....++.++.|++.+.++...|.-+...|. .+..+....+.++.++
T Consensus 450 tR~aIL~kka~~r~-----l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 450 TRIAILRKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHHHhcC-----CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99999998875432 233367888888888888776666655552 2333455555666654
No 71
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.2e-07 Score=80.00 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+.+-++|+|+++.. ..++.+...+.+.++.+.+|+++ +...+....... ...+++.+++.++....+...+....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR--~~~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR--CQRFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHHcC
Confidence 34568899999843 45677777777666666665555 433333332222 26789999999999999888763221
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
..-.++.+..+++.++|.+.-+.....
T Consensus 204 -----~~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 204 -----ISVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 122367889999999998865544433
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=2.3e-07 Score=77.73 Aligned_cols=165 Identities=15% Similarity=0.146 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc------cCCceeEEEEeCC-CCCHHHHHHHHHHHHhhccCCCCccccccc
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLK------THFSSRAWVTVGK-EYNKNELLRTVIKEFHSFSGQPTPVEIHKM 78 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 78 (263)
.-.+.+.++|++|+|||++|..+.+...-. ..+...++ .... .....+....++..+...
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~l~~~~~~~------------ 103 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF-ELDAASNNSVDDIRNLIDQVRIP------------ 103 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE-EeccccCCCHHHHHHHHHHHhhc------------
Confidence 344688999999999999999997742110 11111111 1111 000011122222211100
Q ss_pred cHHHHHHHHHHHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCcc
Q 039728 79 EEMELITTLRGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPN 155 (263)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~ 155 (263)
-..+++-++|+|+++.. ..++.+...+...+..+.+|+++ ............ ...+++.+++.+
T Consensus 104 -----------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr--~~~v~~~~~~~~ 170 (367)
T PRK14970 104 -----------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR--CQIFDFKRITIK 170 (367)
T ss_pred -----------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc--ceeEecCCccHH
Confidence 01234458999999843 34566666665544455555555 333333333222 367899999999
Q ss_pred chHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 156 EAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 156 e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
+....+...+.... ..-.++.++.+++.++|.+..+.....
T Consensus 171 ~l~~~l~~~~~~~g-----~~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 171 DIKEHLAGIAVKEG-----IKFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999987664331 112257888888899987764433333
No 73
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.79 E-value=4.7e-07 Score=72.88 Aligned_cols=135 Identities=11% Similarity=0.083 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
.-++++|++|+|||++|+.+..............|+.+.. . +++..+... +.......+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~------------~~~~~~~~~~ 118 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGH------------TAPKTKEILK 118 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhccc------------chHHHHHHHH
Confidence 3688999999999999977665321111111112333321 1 122211111 0111122222
Q ss_pred HHhCCceEEEEEeCCCCc-----------hhHHHHHHhccCCCCCcEEEEEeCchhhhhhh------ccCCCccceeccC
Q 039728 89 GHLKDKNYMVVFDDVWKI-----------DFWGDVEHALLDNKKCGRIIVTTRHMNVAKAC------KSSSPVHIHELET 151 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~-----------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~------~~~~~~~~~~l~~ 151 (263)
.. ..-+|+||+++.. ...+.+...+.....+.++|.++......... .... ...+.+++
T Consensus 119 ~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~-~~~i~fp~ 194 (284)
T TIGR02880 119 RA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRV-AHHVDFPD 194 (284)
T ss_pred Hc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhC-CcEEEeCC
Confidence 22 2358889999732 12344555554444556666666543221111 1111 15689999
Q ss_pred CCccchHHHHHHHhcC
Q 039728 152 LPPNEAWKLFCRKASG 167 (263)
Q Consensus 152 ls~~e~~~ll~~~~~~ 167 (263)
++.+|...++...+..
T Consensus 195 l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 195 YSEAELLVIAGLMLKE 210 (284)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999888754
No 74
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=2e-07 Score=81.96 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=70.0
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ....+.++..+...+..+++|++| ....+...+.. +...+++.+++.++....+.+.+....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S--Rcq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS--RCQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3445789999984 345777888877776677666555 43444333332 237899999999999999988765331
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
....++.+..|++.++|.+.-+......
T Consensus 209 -----i~i~~eAl~lIa~~a~Gdlr~al~~Ldk 236 (598)
T PRK09111 209 -----VEVEDEALALIARAAEGSVRDGLSLLDQ 236 (598)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2223577888999999998766554433
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.79 E-value=2.5e-08 Score=83.35 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++|+|++|+|||++|+.+++. ....| +.+.. .. +....... ........
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~~----l~~~~~g~------------~~~~i~~~ 207 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----SE----LVRKYIGE------------GARLVREI 207 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----HH----HHHHhhhH------------HHHHHHHH
Confidence 3456899999999999999999983 33222 22211 11 11111000 00111111
Q ss_pred HHHHhCCceEEEEEeCCCCch----------------hHHHHHHhccCC--CCCcEEEEEeCchhhhhhhcc--CCCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID----------------FWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKS--SSPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~----------------~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~--~~~~~~ 146 (263)
+...-...+.+|+||++|... .+.++...+... ..+..+|.||+........-. ..-...
T Consensus 208 f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~ 287 (364)
T TIGR01242 208 FELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRI 287 (364)
T ss_pred HHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceE
Confidence 222223467899999987421 122233222211 235677777775432221111 011256
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
+.++..+.++..++|..+....... . .-....+++.+.|..
T Consensus 288 i~v~~P~~~~r~~Il~~~~~~~~l~----~--~~~~~~la~~t~g~s 328 (364)
T TIGR01242 288 IEVPLPDFEGRLEILKIHTRKMKLA----E--DVDLEAIAKMTEGAS 328 (364)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCC----c--cCCHHHHHHHcCCCC
Confidence 8899999999999999887543211 0 113566777787764
No 76
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.78 E-value=2.1e-07 Score=74.14 Aligned_cols=139 Identities=13% Similarity=0.109 Sum_probs=70.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
.+...-++++|++|+||||+|+.+++........+...++.+... + +...... .......
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~----l~~~~~g------------~~~~~~~ 98 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----D----LVGEYIG------------HTAQKTR 98 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----H----hhhhhcc------------chHHHHH
Confidence 345567899999999999999999763211111111112222211 1 1111100 0011112
Q ss_pred HHHHHHhCCceEEEEEeCCCCc----------hhHHHHHHhccCCCCCcEEEEEeCchhhh------hhhccCCCcccee
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKI----------DFWGDVEHALLDNKKCGRIIVTTRHMNVA------KACKSSSPVHIHE 148 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~----------~~~~~l~~~l~~~~~~~~iliTsR~~~~~------~~~~~~~~~~~~~ 148 (263)
..+... ..-+|++|+++.. +.++.+...+........+++++...... +...... ...+.
T Consensus 99 ~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~ 174 (261)
T TIGR02881 99 EVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISID 174 (261)
T ss_pred HHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEE
Confidence 222221 2348899999842 23344444444434444555555443221 1111211 14688
Q ss_pred ccCCCccchHHHHHHHhcC
Q 039728 149 LETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~ 167 (263)
+++++.+|..+++.+.+..
T Consensus 175 f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ECCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 77
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.77 E-value=5.5e-07 Score=69.16 Aligned_cols=188 Identities=17% Similarity=0.135 Sum_probs=108.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
.++.+++.++|+-|+|||++.+.... .....--.++ +......+...+...++..+..... ........+..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~--s~~~d~~~~v-~i~~~~~s~~~~~~ai~~~l~~~p~-----~~~~~~~e~~~ 119 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLA--SLNEDQVAVV-VIDKPTLSDATLLEAIVADLESQPK-----VNVNAVLEQID 119 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHH--hcCCCceEEE-EecCcchhHHHHHHHHHHHhccCcc-----chhHHHHHHHH
Confidence 35677999999999999999995555 2332222222 2233345566677777777754211 11111222333
Q ss_pred HHHHHHh-CCce-EEEEEeCCCC--chhHHHHHHhccCC---CCCcEEEEEeCchh----hhhhhc-cCCCccc-eeccC
Q 039728 85 TTLRGHL-KDKN-YMVVFDDVWK--IDFWGDVEHALLDN---KKCGRIIVTTRHMN----VAKACK-SSSPVHI-HELET 151 (263)
Q Consensus 85 ~~~~~~l-~~~~-~LlvlD~~~~--~~~~~~l~~~l~~~---~~~~~iliTsR~~~----~~~~~~-~~~~~~~-~~l~~ 151 (263)
..+.... ++++ .+++.|+.++ ...++.+....... ...-+|+..-..+- ...... ...+... |.++|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 3333333 3444 9999999884 33444443332211 11223444433321 111111 1122234 89999
Q ss_pred CCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 152 LPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 152 ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
++.++...|++.++.+.. ...+--.++.+..|+....|.|.+++.++..
T Consensus 200 ~~~~~t~~yl~~~Le~a~--~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 200 LTEAETGLYLRHRLEGAG--LPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred cChHHHHHHHHHHHhccC--CCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999987763 2233334677888999999999999988764
No 78
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=3.2e-07 Score=81.44 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ...+..++..+...+..+.+|++| +...+......+ ...+++.+++.++....+...+....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR--cq~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR--VQRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh--ceeEEccCCCHHHHHHHHHHHHHHcC
Confidence 4556899999983 446777777777666565555444 444444333332 37899999999999999987654321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
.....+.+..+++.++|.+.-+..+.
T Consensus 195 -----I~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 195 -----ISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11224568889999999776444333
No 79
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1e-06 Score=77.94 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=69.1
Q ss_pred CceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++.. ...+.|...+......+.+|+++.+ ......... ....+++..++.++....+.+.+....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS--RCQRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 34568999999843 4567777777766666666665544 333333322 236788999999999998888764431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
....++.+..|++.++|.+..+......+
T Consensus 197 -----l~i~~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 197 -----INLEPGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11225678899999999987665555443
No 80
>PRK06620 hypothetical protein; Validated
Probab=98.76 E-value=1.2e-07 Score=73.07 Aligned_cols=143 Identities=15% Similarity=0.018 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
+.+.|+|++|+|||+|+..+++. .. ..++..... . . .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~--~~-----~~~~~~~~~-~----------------------------~-~------ 81 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL--SN-----AYIIKDIFF-N----------------------------E-E------ 81 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc--cC-----CEEcchhhh-c----------------------------h-h------
Confidence 67899999999999999998873 21 122220000 0 0 0
Q ss_pred HHhCCceEEEEEeCCCCchh--HHHHHHhccCCCCCcEEEEEeCchhhh---hhhccC-CCccceeccCCCccchHHHHH
Q 039728 89 GHLKDKNYMVVFDDVWKIDF--WGDVEHALLDNKKCGRIIVTTRHMNVA---KACKSS-SPVHIHELETLPPNEAWKLFC 162 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~~~--~~~l~~~l~~~~~~~~iliTsR~~~~~---~~~~~~-~~~~~~~l~~ls~~e~~~ll~ 162 (263)
..+ ..-++++||++.... +-.+...+. ..|..+|+|++..... ....+. .....+++++++.++...+++
T Consensus 82 -~~~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 82 -ILE-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred -HHh-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 011 224688899984321 222222222 2355788888754321 111111 111478999999999888888
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 163 RKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
+.+.... ..-.++.++.|++.+.|....+.-+...|
T Consensus 158 k~~~~~~-----l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 158 KHFSISS-----VTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred HHHHHcC-----CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 7764221 22336778888888877765555444433
No 81
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=4e-07 Score=79.63 Aligned_cols=104 Identities=9% Similarity=0.071 Sum_probs=68.0
Q ss_pred CceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++.. ...+.|...+........+|++|.+ ..+...+.. +...+++.+++.++....+.+.+....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcC
Confidence 45568999999843 4566777776655555556665554 333333222 236889999999999999988664321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCh-hHHHHHHHHh
Q 039728 170 SGGCCPSELKELSQDILGKCEGLP-LAIVAVGGLL 203 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~~~~~l 203 (263)
....++.+..|++.++|.+ .++.++...+
T Consensus 196 -----i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 196 -----VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1223577888999999975 5666665433
No 82
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.75 E-value=2.4e-07 Score=79.50 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccc---CCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKT---HFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMEL 83 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 83 (263)
..+-++|+||+|+|||++|+.+++...... ......|+++.... ++..... .........
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e--------Ll~kyvG---------ete~~ir~i 277 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE--------LLNKYVG---------ETERQIRLI 277 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh--------hcccccc---------hHHHHHHHH
Confidence 345689999999999999999998432210 01223455443311 0000000 000001112
Q ss_pred HHHHHHH-hCCceEEEEEeCCCCch--------------hHHHHHHhccCCC--CCcEEEEEeCchhhhhhhccC--CCc
Q 039728 84 ITTLRGH-LKDKNYMVVFDDVWKID--------------FWGDVEHALLDNK--KCGRIIVTTRHMNVAKACKSS--SPV 144 (263)
Q Consensus 84 ~~~~~~~-l~~~~~LlvlD~~~~~~--------------~~~~l~~~l~~~~--~~~~iliTsR~~~~~~~~~~~--~~~ 144 (263)
....+.. ..+++++++||++|... .+.+++..+.... .+..+|.||.........-.. .-+
T Consensus 278 F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD 357 (512)
T TIGR03689 278 FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLD 357 (512)
T ss_pred HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccc
Confidence 2222222 13578999999998311 1234444443322 334455555544332211110 112
Q ss_pred cceeccCCCccchHHHHHHHhcC
Q 039728 145 HIHELETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~~~ 167 (263)
..++++..+.++..++|+.++..
T Consensus 358 ~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 358 VKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred eEEEeCCCCHHHHHHHHHHHhhc
Confidence 46899999999999999998754
No 83
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.75 E-value=4e-08 Score=77.03 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC--CCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE--YNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
....++|+|++|+|||||+++++++.... +|+..+|+.+... .+..+++..+...+....... +............
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHHHHH
Confidence 45678899999999999999999964333 7787888874443 677777777733332221111 1111111111222
Q ss_pred HHHHHH-hCCceEEEEEeCCCC
Q 039728 85 TTLRGH-LKDKNYMVVFDDVWK 105 (263)
Q Consensus 85 ~~~~~~-l~~~~~LlvlD~~~~ 105 (263)
...... -.++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 247899999999963
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.75 E-value=5.2e-08 Score=69.16 Aligned_cols=21 Identities=43% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
|+|+|++|+|||++++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999994
No 85
>CHL00181 cbbX CbbX; Provisional
Probab=98.75 E-value=7e-07 Score=71.87 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
...++++|++|+|||++|+.+++.......-...-|+.+.. . .+...+... ........+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~----~l~~~~~g~------------~~~~~~~~l 118 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----D----DLVGQYIGH------------TAPKTKEVL 118 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----H----HHHHHHhcc------------chHHHHHHH
Confidence 34588999999999999999977321111111111333221 1 122222111 011111222
Q ss_pred HHHhCCceEEEEEeCCCCc-----------hhHHHHHHhccCCCCCcEEEEEeCchhhhh------hhccCCCccceecc
Q 039728 88 RGHLKDKNYMVVFDDVWKI-----------DFWGDVEHALLDNKKCGRIIVTTRHMNVAK------ACKSSSPVHIHELE 150 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~-----------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~------~~~~~~~~~~~~l~ 150 (263)
... ..-+|+||+++.. +....+...+.....+..||+++....... ...... ...+.++
T Consensus 119 ~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~ 194 (287)
T CHL00181 119 KKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFP 194 (287)
T ss_pred HHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcC
Confidence 221 2348999999742 123344444444445566666665433211 111111 1479999
Q ss_pred CCCccchHHHHHHHhcCC
Q 039728 151 TLPPNEAWKLFCRKASGP 168 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~~ 168 (263)
+++.+|..+++...+...
T Consensus 195 ~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 195 DYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999998887543
No 86
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=5.2e-07 Score=77.72 Aligned_cols=103 Identities=9% Similarity=-0.005 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ....+.+...+...++...+|++| +........... ...+.+.+++.++....+...+....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR--c~~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR--CQRFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh--ceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4566999999984 345667777776665555555544 433333332222 36789999999999999988764331
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
....++.+..+++.++|.+..+......
T Consensus 196 -----i~id~~al~~La~~s~G~lr~al~~Ldk 223 (486)
T PRK14953 196 -----IEYEEKALDLLAQASEGGMRDAASLLDQ 223 (486)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1223567788999999987755544433
No 87
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.74 E-value=6.7e-07 Score=72.40 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
.+|.|+|-+|+|||.+++++++.. . ...+|+++.+..+....+..++.+..........-.....+.......+.
T Consensus 31 S~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~ 105 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV 105 (438)
T ss_pred eeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHH
Confidence 345999999999999999999843 2 23679999999999999999999885221111000111133444555554
Q ss_pred H--HhC--CceEEEEEeCCCCchhHH-----HHHHhccCCCCCcEEEEEeCchhhhhhhc--cCCCccceeccCCCccch
Q 039728 89 G--HLK--DKNYMVVFDDVWKIDFWG-----DVEHALLDNKKCGRIIVTTRHMNVAKACK--SSSPVHIHELETLPPNEA 157 (263)
Q Consensus 89 ~--~l~--~~~~LlvlD~~~~~~~~~-----~l~~~l~~~~~~~~iliTsR~~~~~~~~~--~~~~~~~~~l~~ls~~e~ 157 (263)
+ ... ++.++|||||++...+++ .+...-.-.......|+++-......... +....-.+.++..+.+|.
T Consensus 106 q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~ 185 (438)
T KOG2543|consen 106 QWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEET 185 (438)
T ss_pred hhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHH
Confidence 4 222 358999999998544322 22222111122233444444332221111 222234678888999999
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 158 WKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 158 ~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
..++.+...+...-.-..+-..-...-++..|+ -+-.+..++.
T Consensus 186 ~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~ 228 (438)
T KOG2543|consen 186 QVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLIS 228 (438)
T ss_pred HHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 998876543221000001122233455556676 4444444444
No 88
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=4.6e-07 Score=73.61 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=67.4
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +....+.+++.+...+.++.+|++|.+ ..+.+.+.+. ...+.+.+++.+++.+.+... +..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR--Cq~i~~~~~~~~~~~~~L~~~-~~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR--CQRLEFKLPPAHEALAWLLAQ-GVS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh--heEeeCCCcCHHHHHHHHHHc-CCC-
Confidence 345688999998 455677888888887778877776665 4444444443 378899999999999998764 211
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
...+..++..++|.|+....+.
T Consensus 188 ---------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ---------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---------hHHHHHHHHHcCCCHHHHHHHh
Confidence 2446678999999998654443
No 89
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.71 E-value=5.3e-07 Score=70.96 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+..+.|||+|+|||+.|..++....-.+.|+..+.-...++.........=.+ +......
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik-----------------~fakl~~ 117 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK-----------------NFAKLTV 117 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc-----------------CHHHHhh
Confidence 45678899999999999999999885444455554443222222111111110000 0001111
Q ss_pred HHHHHh--CCce-EEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCchhhh-hhhccCCCccceeccCCCccchHH
Q 039728 86 TLRGHL--KDKN-YMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHMNVA-KACKSSSPVHIHELETLPPNEAWK 159 (263)
Q Consensus 86 ~~~~~l--~~~~-~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l~~ls~~e~~~ 159 (263)
...... ...+ -++|||++|. .+.|..+.+.+...+...+.++.|.+.... ..... +..-+..+++..++...
T Consensus 118 ~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~d~~iv~ 195 (346)
T KOG0989|consen 118 LLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLKDEDIVD 195 (346)
T ss_pred ccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh--hHHHhcCCCcchHHHHH
Confidence 010000 0123 4899999994 456788888877766667776666654322 22222 22568899999998888
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q 039728 160 LFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS 204 (263)
Q Consensus 160 ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 204 (263)
-|+..+.... ..-..+..+.|++.++|--.-...+...+.
T Consensus 196 rL~~Ia~~E~-----v~~d~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 196 RLEKIASKEG-----VDIDDDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred HHHHHHHHhC-----CCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 8888775442 333367788888888887554444444443
No 90
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=7.2e-07 Score=73.22 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=66.1
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +....+.+++.+...+.+..+|++|.+ ..+.+...+.. +.+.+.+++.+++.+.+....+.+
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC--q~~~~~~~~~~~~~~~L~~~~~~~- 183 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC--RLHYLAPPPEQYALTWLSREVTMS- 183 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc--ccccCCCCCHHHHHHHHHHccCCC-
Confidence 455688999998 455778888888888878777666665 44554544433 688999999999999887654322
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLA 195 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~ 195 (263)
++.+..++..++|.|..
T Consensus 184 ---------~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 184 ---------QDALLAALRLSAGAPGA 200 (334)
T ss_pred ---------HHHHHHHHHHcCCCHHH
Confidence 34567788999999963
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.70 E-value=1.6e-07 Score=78.95 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=80.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+-|+|+|++|+|||++|+.+++. .... |+.+.. .. +...... ........
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~~----l~~~~~g------------~~~~~i~~ 215 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----SE----LVQKFIG------------EGARLVRE 215 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----HH----HhHhhcc------------chHHHHHH
Confidence 34567899999999999999999983 3222 222211 11 1111100 00011111
Q ss_pred HHHHHhCCceEEEEEeCCCCc------------hh----HHHHHHhccCC--CCCcEEEEEeCchhhhhhhccC--CCcc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKI------------DF----WGDVEHALLDN--KKCGRIIVTTRHMNVAKACKSS--SPVH 145 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~------------~~----~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~~--~~~~ 145 (263)
.+...-...+.+|+||++|.. .. +..+...+... ..+..||.||.........-.. .-..
T Consensus 216 ~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~ 295 (389)
T PRK03992 216 LFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDR 295 (389)
T ss_pred HHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCce
Confidence 122222346789999999842 11 12222222211 2345677677654332211110 0125
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL 192 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 192 (263)
.+.++..+.++-.++|+.+....... . ......+++.+.|.
T Consensus 296 ~I~v~~P~~~~R~~Il~~~~~~~~~~--~----~~~~~~la~~t~g~ 336 (389)
T PRK03992 296 IIEVPLPDEEGRLEILKIHTRKMNLA--D----DVDLEELAELTEGA 336 (389)
T ss_pred EEEECCCCHHHHHHHHHHHhccCCCC--C----cCCHHHHHHHcCCC
Confidence 68999999999999999887543211 1 12356677777765
No 92
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=6.4e-07 Score=77.40 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=69.4
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++. ....+.++..+...+..+.+|++|.+. .+...... +...+++.+++.++....+...+....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EG 193 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILS--RTQHFRFKQIPQNSIISHLKTILEKEG 193 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3456889999984 445677887777766677777666553 22222333 237899999999999999987765431
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
....++.+..|++.++|.+.-+..+.
T Consensus 194 -----i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 194 -----VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred -----CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 12235778889999999986555444
No 93
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.5e-06 Score=72.31 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=110.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
....+.|+|+.|.|||.|+.++++ ......+...++.+. ...++...+..+.. .-...
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~----------------~~~~~ 169 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD----------------NEMEK 169 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh----------------hhHHH
Confidence 477899999999999999999999 455555533333332 33444444444422 11233
Q ss_pred HHHHhCCceEEEEEeCCCC---chh-HHHHHHhccCC-CCCcEEEEEeCchh---------hhhhhccCCCccceeccCC
Q 039728 87 LRGHLKDKNYMVVFDDVWK---IDF-WGDVEHALLDN-KKCGRIIVTTRHMN---------VAKACKSSSPVHIHELETL 152 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~---~~~-~~~l~~~l~~~-~~~~~iliTsR~~~---------~~~~~~~~~~~~~~~l~~l 152 (263)
+++.. .-=++++||++- .+. .+++...+... ..|..|++|++... ..+++... -.+++.+.
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G---l~~~I~~P 244 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG---LVVEIEPP 244 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce---eEEeeCCC
Confidence 44444 223788999972 111 22222222222 22337888886532 22222221 57999999
Q ss_pred CccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh----c--cCCCCHHHHHHHHHHhccccCC
Q 039728 153 PPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL----S--TKNRVVSEWKKLFDRLGSILGS 226 (263)
Q Consensus 153 s~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l----~--~~~~~~~~~~~~~~~~~~~~~~ 226 (263)
+.+....++++.+.... ....++....+++....+-.-+..+...| . ....+....++.+..+......
T Consensus 245 d~e~r~aiL~kka~~~~-----~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~ 319 (408)
T COG0593 245 DDETRLAILRKKAEDRG-----IEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK 319 (408)
T ss_pred CHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc
Confidence 99999999998765432 22224555556665555544444333333 1 2233566666666665544333
Q ss_pred CCCchhHHHHHHHhh
Q 039728 227 DPHLKDCNRVLSEGY 241 (263)
Q Consensus 227 ~~~~~~~~~~l~~s~ 241 (263)
-..+.+....-..|
T Consensus 320 -itie~I~~~Va~~y 333 (408)
T COG0593 320 -ITIEDIQKIVAEYY 333 (408)
T ss_pred -CCHHHHHHHHHHHh
Confidence 33344444444444
No 94
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.5e-06 Score=70.81 Aligned_cols=90 Identities=11% Similarity=0.018 Sum_probs=65.3
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +....+.+++.+...+++..+|++|.+. .+.+...+. ...+.+.+++.++..+.+.......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR--C~~~~~~~~~~~~~~~~L~~~~~~~- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR--CQTWLIHPPEEQQALDWLQAQSSAE- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh--ceEEeCCCCCHHHHHHHHHHHhccC-
Confidence 445588899998 4557788888888888888777777654 444444333 3789999999999999998765322
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChh
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPL 194 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl 194 (263)
...+...+..++|.|.
T Consensus 183 ---------~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 183 ---------ISEILTALRINYGRPL 198 (325)
T ss_pred ---------hHHHHHHHHHcCCCHH
Confidence 2345667788899886
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.1e-06 Score=77.57 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++. ....+.|...+...+..+.+|++| ....+...+... ...+++.+++.++....+...+....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR--c~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR--CQRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh--hhhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 3445888999984 445777888877766666666544 444444333332 37889999999999988887654321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChh-HHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPL-AIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~ 199 (263)
....++.+..|++.++|... ++..+
T Consensus 196 -----i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 196 -----ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12235677888999998764 44444
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=5.3e-06 Score=72.75 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=67.8
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ...++.+...+...+..+.+|++|.. ..+....... ...+++.+++.++....+.+.+....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR--c~~~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR--CQHFNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh--ceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4556889999984 44567777777766666666665544 3333333322 36789999999999999987763321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
....++.+..|++.++|.+..+..+..
T Consensus 196 -----i~id~eAl~lLa~~s~GdlR~alslLd 222 (563)
T PRK06647 196 -----IKYEDEALKWIAYKSTGSVRDAYTLFD 222 (563)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 122357788899999998865544443
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=1.3e-06 Score=74.85 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ....+.+...+...+....+|++|.. ..+....... ...+++.+++.++....+...+....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sR--c~~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSR--CQKMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHh--ceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4556889999984 34566677777766666666666543 3333333322 36899999999999998887654321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
....++.+..|++.++|.+.-+...
T Consensus 198 -----~~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 198 -----IETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223567888999999987544333
No 98
>PTZ00202 tuzin; Provisional
Probab=98.63 E-value=6e-06 Score=68.89 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=82.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..++++|+|++|+|||||++.+.... . + ..++++.. +..+++..++..+..... .....-...+.+.
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l--~--~-~qL~vNpr---g~eElLr~LL~ALGV~p~-----~~k~dLLrqIqea 351 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKE--G--M-PAVFVDVR---GTEDTLRSVVKALGVPNV-----EACGDLLDFISEA 351 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcC--C--c-eEEEECCC---CHHHHHHHHHHHcCCCCc-----ccHHHHHHHHHHH
Confidence 34699999999999999999999732 2 2 13333333 568888888888864211 1111111222222
Q ss_pred HHHHh-C-CceEEEEEeCCC--C-chhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHH
Q 039728 87 LRGHL-K-DKNYMVVFDDVW--K-IDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLF 161 (263)
Q Consensus 87 ~~~~l-~-~~~~LlvlD~~~--~-~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll 161 (263)
+.+.- . +++.+||+-==+ + ...+++....- ....-|+|++----+..............|-+++||.++|.++.
T Consensus 352 Ll~~~~e~GrtPVLII~lreg~~l~rvyne~v~la-~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~ 430 (550)
T PTZ00202 352 CRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALA-CDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYT 430 (550)
T ss_pred HHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHH-ccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHH
Confidence 22222 2 455566553221 1 22344443332 22345677765444333322223334468999999999999988
Q ss_pred HHHh
Q 039728 162 CRKA 165 (263)
Q Consensus 162 ~~~~ 165 (263)
....
T Consensus 431 ~h~~ 434 (550)
T PTZ00202 431 QHAI 434 (550)
T ss_pred hhcc
Confidence 7665
No 99
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.63 E-value=2.5e-07 Score=77.65 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=81.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++|+|++|+|||++|+.+++. .... |+.+.. .. +....... ....+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~--l~~~-----fi~i~~----s~----l~~k~~ge------------~~~~lr~l 230 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH--TTAT-----FIRVVG----SE----FVQKYLGE------------GPRMVRDV 230 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--cCCC-----EEEEeh----HH----HHHHhcch------------hHHHHHHH
Confidence 4577899999999999999999983 2222 222211 11 11111000 01112222
Q ss_pred HHHHhCCceEEEEEeCCCCc------------h----hHHHHHHhccCC--CCCcEEEEEeCchhhhhh-h-ccCCCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKI------------D----FWGDVEHALLDN--KKCGRIIVTTRHMNVAKA-C-KSSSPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~------------~----~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~-~-~~~~~~~~ 146 (263)
+.......+.+++||++|.. . .+.++...+... ..+..+|.||........ . ....-...
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~ 310 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 310 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEE
Confidence 22233457899999998731 0 122233332221 235567777776543322 1 11111256
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL 192 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 192 (263)
++++..+.++..++|+....... ... .-...++++.+.|+
T Consensus 311 I~~~~P~~~~R~~Il~~~~~~~~--l~~----dvd~~~la~~t~g~ 350 (398)
T PTZ00454 311 IEFPLPDRRQKRLIFQTITSKMN--LSE----EVDLEDFVSRPEKI 350 (398)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCC--CCc----ccCHHHHHHHcCCC
Confidence 88888888888888887764431 111 12345667777666
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.6e-06 Score=76.90 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeC-chhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTR-HMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR-~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++. ....+.|+..+......+.+|++|. ...+...+... ...+++..++.++....+...+....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSR--c~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISR--CQRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3455889999984 4456778777776555665555444 33333333322 36788889999998888877654321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
.....+.+..+++.++|.+..+..+...
T Consensus 198 -----i~is~~al~~La~~s~G~lr~A~~lLek 225 (620)
T PRK14948 198 -----IEIEPEALTLVAQRSQGGLRDAESLLDQ 225 (620)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1112466888999999988755544443
No 101
>CHL00176 ftsH cell division protein; Validated
Probab=98.62 E-value=9.4e-07 Score=78.37 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++|+||+|+|||++|+.++... . .-|+.+... .+. .... +.........
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~f~----~~~~------------g~~~~~vr~l 267 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----EFV----EMFV------------GVGAARVRDL 267 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----HHH----HHhh------------hhhHHHHHHH
Confidence 34568999999999999999998832 1 123332211 110 0000 0011122333
Q ss_pred HHHHhCCceEEEEEeCCCCc------------h----hHHHHHHhccCC--CCCcEEEEEeCchhhhhh-hc-cCCCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKI------------D----FWGDVEHALLDN--KKCGRIIVTTRHMNVAKA-CK-SSSPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~------------~----~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~-~~-~~~~~~~ 146 (263)
+.......+++|+||++|.. . .+.+++..+... ..+..+|.+|........ .. ...-...
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQ 347 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceE
Confidence 44444567899999999732 1 123333332221 234455656655433221 11 1011156
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCC-ChhHHHHHHHHh-----ccCC--CCHHHHHHHHH
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEG-LPLAIVAVGGLL-----STKN--RVVSEWKKLFD 218 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~~l-----~~~~--~~~~~~~~~~~ 218 (263)
+.++..+.++-.++++.++... ..........+++.+.| .+.-|..+.... +... -+.+....+++
T Consensus 348 I~v~lPd~~~R~~IL~~~l~~~------~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHARNK------KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred EEECCCCHHHHHHHHHHHHhhc------ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 8888889999999999887653 11223456778888887 344444443321 1121 24566666666
Q ss_pred Hh
Q 039728 219 RL 220 (263)
Q Consensus 219 ~~ 220 (263)
+.
T Consensus 422 rv 423 (638)
T CHL00176 422 RV 423 (638)
T ss_pred HH
Confidence 54
No 102
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.61 E-value=2.9e-07 Score=69.32 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=18.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+...+.++|+|++|+|||+|+.+++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4456799999999999999999999884
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.8e-06 Score=76.25 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++.. ...+.|...+...+..+.+|++| +...+...+... ...+++.+++.++....+.+.+....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR--c~~vef~~l~~~ei~~~L~~i~~~eg 203 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR--CQRFNFKRIPLDEIQSQLQMICRAEG 203 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--ceEEecCCCCHHHHHHHHHHHHHHcC
Confidence 34457899999853 45677887777766666555544 434443333322 37899999999999988887664321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIV 197 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 197 (263)
....++.+..|++.++|...-+.
T Consensus 204 -----i~I~~eal~~La~~s~Gdlr~al 226 (620)
T PRK14954 204 -----IQIDADALQLIARKAQGSMRDAQ 226 (620)
T ss_pred -----CCCCHHHHHHHHHHhCCCHHHHH
Confidence 11225788889999999766433
No 104
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.9e-07 Score=77.89 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=85.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..|=|++|||||+|||.||.+++.... +-|+.+..+. ++. ...+.+...+...
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isApe--------ivS------------GvSGESEkkiRel 274 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAPE--------IVS------------GVSGESEKKIREL 274 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecchh--------hhc------------ccCcccHHHHHHH
Confidence 456789999999999999999998432 2345544321 111 2223334445555
Q ss_pred HHHHhCCceEEEEEeCCCC-------------chhHHHHHHhccCCC----CCcEEEE---EeCchhhhhhhccCCCc-c
Q 039728 87 LRGHLKDKNYMVVFDDVWK-------------IDFWGDVEHALLDNK----KCGRIIV---TTRHMNVAKACKSSSPV-H 145 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~-------------~~~~~~l~~~l~~~~----~~~~ili---TsR~~~~~~~~~~~~~~-~ 145 (263)
+.++.+.-++++++|++|. .....++...+.... .|-.|+| |+|...+-+.+.-..++ +
T Consensus 275 F~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdr 354 (802)
T KOG0733|consen 275 FDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDR 354 (802)
T ss_pred HHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccc
Confidence 5555567899999999982 112334444433221 1222333 56665444444322221 4
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL 192 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 192 (263)
.+.+.--+..+-.++|+....+-. ... .-...+|++.+-|+
T Consensus 355 EI~l~vP~e~aR~~IL~~~~~~lr--l~g----~~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 355 EICLGVPSETAREEILRIICRGLR--LSG----DFDFKQLAKLTPGF 395 (802)
T ss_pred eeeecCCchHHHHHHHHHHHhhCC--CCC----CcCHHHHHhcCCCc
Confidence 566666666666677766654331 111 22355666666665
No 105
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.60 E-value=4.2e-07 Score=65.02 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
.+.+.|+|++|+||||++..++.. .......+++++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEE
Confidence 467899999999999999999984 333323455665544
No 106
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.59 E-value=1.1e-07 Score=78.22 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC--CHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY--NKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
....+|+|++|+|||||+++++++.... +|+..+|+.+.... ...++...+...+.... ...+....-........
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999864444 78888888865543 55555555543222111 11111111111111111
Q ss_pred HHHHH-hCCceEEEEEeCCC
Q 039728 86 TLRGH-LKDKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~-l~~~~~LlvlD~~~ 104 (263)
..... ..+++++|++|+++
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11111 25689999999997
No 107
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.59 E-value=1.4e-06 Score=70.99 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...++++||||+|+|||.+|+.++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999993
No 108
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.59 E-value=4.1e-06 Score=68.79 Aligned_cols=125 Identities=16% Similarity=0.225 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
-..+++++|++|+|||+++..+++. ... ...+++... .. .......+..+...
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~-~~~i~~~l~~~~~~-------------------- 94 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CR-IDFVRNRLTRFAST-------------------- 94 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-cc-HHHHHHHHHHHHHh--------------------
Confidence 3457777999999999999999883 221 233444443 11 11111111111100
Q ss_pred HHHHhCCceEEEEEeCCCCc--h-hHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHH
Q 039728 87 LRGHLKDKNYMVVFDDVWKI--D-FWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFC 162 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~--~-~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~ 162 (263)
. .+...+-++|+|+++.. . ....+...+.....++.+|+||.... ........ ...+.++..+.++..+++.
T Consensus 95 ~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR--~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 95 V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR--CRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh--ceEEEeCCCCHHHHHHHHH
Confidence 0 01134457889999844 2 22334433444456678888886543 22222222 2567777777777766654
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.2e-06 Score=75.91 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=66.3
Q ss_pred ceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCC
Q 039728 94 KNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSS 170 (263)
Q Consensus 94 ~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~ 170 (263)
++-++|+|+++. ....+.+...+...+..+.+|++| +...+...+... ...+++.+++.++....+.+.+....
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR--c~iv~f~~ls~~ei~~~L~~ia~~eg- 197 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR--CQIFDFNRIQVADIVNHLQYVASKEG- 197 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh--hheeecCCCCHHHHHHHHHHHHHHcC-
Confidence 445889999984 445777888877766666665544 444444443332 37899999999999999987664331
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 171 GGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
.....+.+..|++.++|...-+...
T Consensus 198 ----i~i~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 198 ----ITAEPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred ----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1222467888999999877644333
No 110
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=3e-06 Score=74.50 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=64.4
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++. ...++.+...+...+..+.+|++| ....+...... +...+++.+++.++....+...+....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4566889999984 446777877777665565555544 44333333322 236788999999999999888764321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVA 198 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 198 (263)
....++.+..|++.++|.+..+..
T Consensus 196 -----i~i~~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 196 -----IEYEDEALRLIARAAEGGMRDALS 219 (559)
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 122246778888888888764433
No 111
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.55 E-value=1.2e-06 Score=74.10 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++|+.+++. ....| +.+... . +...... .........
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s-e-------L~~k~~G------------e~~~~vr~l 268 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS-E-------LIQKYLG------------DGPKLVREL 268 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc-h-------hhhhhcc------------hHHHHHHHH
Confidence 4556889999999999999999983 33222 222111 0 0111100 001112222
Q ss_pred HHHHhCCceEEEEEeCCCCch----------------hHHHHHHhccC--CCCCcEEEEEeCchhhhhhhcc--CCCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID----------------FWGDVEHALLD--NKKCGRIIVTTRHMNVAKACKS--SSPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~----------------~~~~l~~~l~~--~~~~~~iliTsR~~~~~~~~~~--~~~~~~ 146 (263)
+.......+.+++||++|... .+.++...+.. ...+..||.+|.........-. ..-...
T Consensus 269 F~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~ 348 (438)
T PTZ00361 269 FRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRK 348 (438)
T ss_pred HHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEE
Confidence 222334567899999986210 11222222221 1235567777776544332211 111257
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
++++..+.++..++|..+...... ... -....++..+.|.-
T Consensus 349 I~~~~Pd~~~R~~Il~~~~~k~~l--~~d----vdl~~la~~t~g~s 389 (438)
T PTZ00361 349 IEFPNPDEKTKRRIFEIHTSKMTL--AED----VDLEEFIMAKDELS 389 (438)
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCC--CcC----cCHHHHHHhcCCCC
Confidence 899999999999999987654311 111 23455566665553
No 112
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.55 E-value=2.8e-06 Score=73.07 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-|.++||+|+|||.+|+.++.. ....| +.++... +.... .+.+.......
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~----------l~~~~------------vGese~~l~~~ 310 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK----------LFGGI------------VGESESRMRQM 310 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH----------hcccc------------cChHHHHHHHH
Confidence 4567899999999999999999983 32111 1222211 00000 00011122222
Q ss_pred HHHHhCCceEEEEEeCCCCch--------------hHHHHHHhccCCCCCcEEEEEeCchhhhhh-h-ccCCCccceecc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID--------------FWGDVEHALLDNKKCGRIIVTTRHMNVAKA-C-KSSSPVHIHELE 150 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~--------------~~~~l~~~l~~~~~~~~iliTsR~~~~~~~-~-~~~~~~~~~~l~ 150 (263)
+...-...+++|++|++|... .+..+...+.....+..+|.||........ + ....=...+.++
T Consensus 311 f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~ 390 (489)
T CHL00195 311 IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLD 390 (489)
T ss_pred HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeC
Confidence 222223578999999997311 122333333333334445567765443221 1 100111567888
Q ss_pred CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 151 TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
.-+.++-.++|+.++...... .........+++.+.|+.
T Consensus 391 lP~~~eR~~Il~~~l~~~~~~----~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 391 LPSLEEREKIFKIHLQKFRPK----SWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CcCHHHHHHHHHHHHhhcCCC----cccccCHHHHHhhcCCCC
Confidence 888999999999887653211 111234567777777764
No 113
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.3e-05 Score=63.96 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEE-EeCchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIV-TTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~ili-TsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ....+.+++.+...+ .+.+|+ |++...+.+...+. ...+.+.+++.++..+.+.+......
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~~~~~~ 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRLGDEEI 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhh--ceEEecCCCCHHHHHHHHHHhhcccc
Confidence 4456889999984 445677888877666 454554 44555555555443 37899999999999999998753221
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGG 201 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 201 (263)
. ......++..++|.|..+.....
T Consensus 200 -----~---~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 200 -----L---NINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred -----c---hhHHHHHHHHcCCCHHHHHHHHH
Confidence 0 11246788999999976554443
No 114
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.53 E-value=4.4e-07 Score=74.99 Aligned_cols=97 Identities=18% Similarity=0.137 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC--CCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE--YNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
....++|+|++|+|||||+..+++..... +|+..+|+.+... .+..++...+...+....... +......-.....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~-p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC-ChHHHHHHHHHHH
Confidence 34567899999999999999999853333 5777778876543 677787777755443322111 1111100011112
Q ss_pred HHHHHH-hCCceEEEEEeCCCC
Q 039728 85 TTLRGH-LKDKNYMVVFDDVWK 105 (263)
Q Consensus 85 ~~~~~~-l~~~~~LlvlD~~~~ 105 (263)
...... ..+++++|++|+++.
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 247899999999973
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.53 E-value=1.1e-06 Score=76.58 Aligned_cols=181 Identities=11% Similarity=0.093 Sum_probs=93.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++|+||+|+|||++|+.++.. ... -|+.+.. ..+. .... +.....+...
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~--~~~-----~~~~i~~----~~~~----~~~~------------g~~~~~l~~~ 139 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGE--AGV-----PFFSISG----SDFV----EMFV------------GVGASRVRDL 139 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH--cCC-----CeeeccH----HHHH----HHHh------------cccHHHHHHH
Confidence 3456899999999999999999883 221 1222221 1111 1110 0011122333
Q ss_pred HHHHhCCceEEEEEeCCCCch----------------hHHHHHHhccCC--CCCcEEEEEeCchhhhh-hhc-cCCCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID----------------FWGDVEHALLDN--KKCGRIIVTTRHMNVAK-ACK-SSSPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~----------------~~~~l~~~l~~~--~~~~~iliTsR~~~~~~-~~~-~~~~~~~ 146 (263)
+.......+.+|+||++|... .+.+++..+... ..+..||.||....... ... ...-...
T Consensus 140 f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~ 219 (495)
T TIGR01241 140 FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQ 219 (495)
T ss_pred HHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEE
Confidence 333334567899999997311 122233333221 22344555665543221 111 0011257
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHHHh-----ccC--CCCHHHHHHHHH
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL-PLAIVAVGGLL-----STK--NRVVSEWKKLFD 218 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~~l-----~~~--~~~~~~~~~~~~ 218 (263)
+.++..+.++-.++++..+...... .......+++.+.|. +.-+..+.... +.. .-+.+.+..+++
T Consensus 220 i~i~~Pd~~~R~~il~~~l~~~~~~------~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 220 VVVDLPDIKGREEILKVHAKNKKLA------PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred EEcCCCCHHHHHHHHHHHHhcCCCC------cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 8888888888899998877543111 123456788888875 44444443321 112 224566666666
Q ss_pred Hh
Q 039728 219 RL 220 (263)
Q Consensus 219 ~~ 220 (263)
+.
T Consensus 294 ~~ 295 (495)
T TIGR01241 294 RV 295 (495)
T ss_pred HH
Confidence 54
No 116
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.52 E-value=7.3e-06 Score=69.13 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRG 89 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (263)
+++|.||-++||||+++.+.. ..... .+|++..+......-+.+.... +..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~~l~d~~~~------------------------~~~ 89 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRIELLDLLRA------------------------YIE 89 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchhhHHHHHHH------------------------HHH
Confidence 999999999999999977766 23222 5666654432222111221111 111
Q ss_pred HhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhc---cCCCccceeccCCCccchHH
Q 039728 90 HLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACK---SSSPVHIHELETLPPNEAWK 159 (263)
Q Consensus 90 ~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~---~~~~~~~~~l~~ls~~e~~~ 159 (263)
....++..++||+|+....|......+.+.... ++++|+.+........ ...+...+.+-|||..|-..
T Consensus 90 ~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 90 LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 112267899999999999999888888887766 7888888764443221 11224678999999998865
No 117
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.5e-06 Score=70.23 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=50.0
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHH
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~ 164 (263)
+.+-++|+|+++. ....+.++..+...+.++.+|++|.+. .+.+...+. ...+++.+++.++....+.+.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR--c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR--CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh--ceeeeCCCCCHHHHHHHHHHc
Confidence 3455788999984 445677888888877777777776653 333333333 378999999999998888764
No 118
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=1.4e-05 Score=65.10 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=65.5
Q ss_pred ceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCC
Q 039728 94 KNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSS 170 (263)
Q Consensus 94 ~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~ 170 (263)
+.-++|+|+++ +....+.+++.+...++++.+|++|.+ ..+.+.+.++ ...+.+.+++.+++.+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR--Cq~~~~~~~~~~~~~~~L~~~~--~-- 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR--CQQWVVTPPSTAQAMQWLKGQG--I-- 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc--ceeEeCCCCCHHHHHHHHHHcC--C--
Confidence 44588899998 455778888888888888766666554 4555555444 3789999999999999987642 1
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 171 GGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
. ....++..++|.|+....+
T Consensus 182 ----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 ----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ----c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999866544
No 119
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.9e-06 Score=70.84 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=79.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHH
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMEL 83 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 83 (263)
...+...++++|++|+|||+||..++. ...|+.+--++-.+ ..+.+....
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~--------------------------miG~sEsaK 583 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPED--------------------------MIGLSESAK 583 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHH--------------------------ccCccHHHH
Confidence 345677889999999999999999998 45777544333221 111122222
Q ss_pred HHH----HHHHhCCceEEEEEeCCCC------------chhHHHHHHhccCCCC-CcE--EEEEeCchhhhhhhccCCCc
Q 039728 84 ITT----LRGHLKDKNYMVVFDDVWK------------IDFWGDVEHALLDNKK-CGR--IIVTTRHMNVAKACKSSSPV 144 (263)
Q Consensus 84 ~~~----~~~~l~~~~~LlvlD~~~~------------~~~~~~l~~~l~~~~~-~~~--iliTsR~~~~~~~~~~~~~~ 144 (263)
..+ +....+..--+||+||++. ...++.++..+...++ |-+ |+-||....++..+.....+
T Consensus 584 c~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F 663 (744)
T KOG0741|consen 584 CAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCF 663 (744)
T ss_pred HHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhh
Confidence 233 3333344446899999873 2235566666665544 334 34466666666554432211
Q ss_pred -cceeccCCCc-cchHHHHHHHh
Q 039728 145 -HIHELETLPP-NEAWKLFCRKA 165 (263)
Q Consensus 145 -~~~~l~~ls~-~e~~~ll~~~~ 165 (263)
..+.++.++. ++..+.+...-
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLEELN 686 (744)
T ss_pred hheeecCccCchHHHHHHHHHcc
Confidence 4688999887 77777776553
No 120
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.7e-06 Score=72.12 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
..=|++|||||||||-||+++++ ..+.+ |+++..+ +|++..... +.......+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~N-----FisVKGP--------ELlNkYVGE------------SErAVR~vF 597 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGAN-----FISVKGP--------ELLNKYVGE------------SERAVRQVF 597 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCc-----eEeecCH--------HHHHHHhhh------------HHHHHHHHH
Confidence 34578999999999999999999 44434 4555543 222322211 122333334
Q ss_pred HHHhCCceEEEEEeCCCC-------------chhHHHHHHhccCC--CCCcEEEEEeCchhhh-hhh-ccCCCccceecc
Q 039728 88 RGHLKDKNYMVVFDDVWK-------------IDFWGDVEHALLDN--KKCGRIIVTTRHMNVA-KAC-KSSSPVHIHELE 150 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~-------------~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~-~~~-~~~~~~~~~~l~ 150 (263)
+++-..-+++|+||++|. ...+++++..+... +.|.-||-.|..+++. +.+ ....-++.+.++
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 444456899999999982 33466777666544 3455455444433322 211 111112577888
Q ss_pred CCCccchHHHHHHHhcC
Q 039728 151 TLPPNEAWKLFCRKASG 167 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~ 167 (263)
.-+.+|-.++++.....
T Consensus 678 lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKN 694 (802)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 88889999999988763
No 121
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=9.6e-06 Score=67.58 Aligned_cols=156 Identities=11% Similarity=0.119 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.+-|.|.+|.|||.+...++.+..-...-..++++++.+-.....+|..+...+......+. +..+...
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~-------~~~~~~~ 245 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG-------TGMQHLE 245 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc-------hhHHHHH
Confidence 345678899999999999999998843222122245799998878888999999998865533221 2245555
Q ss_pred HHHHHhCC--ceEEEEEeCCCCch--hHHHHHHhccCC-CCCcEEEEEe-Cc-----hhhhhhhcc--CCCccceeccCC
Q 039728 86 TLRGHLKD--KNYMVVFDDVWKID--FWGDVEHALLDN-KKCGRIIVTT-RH-----MNVAKACKS--SSPVHIHELETL 152 (263)
Q Consensus 86 ~~~~~l~~--~~~LlvlD~~~~~~--~~~~l~~~l~~~-~~~~~iliTs-R~-----~~~~~~~~~--~~~~~~~~l~~l 152 (263)
.+..+..+ ..+|+|+|++|... ....+...+.+. -+++++|+.- -+ ...+..... ......+..++.
T Consensus 246 ~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PY 325 (529)
T KOG2227|consen 246 KFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPY 325 (529)
T ss_pred HHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCC
Confidence 56555543 36899999998311 112222222222 2344444322 11 223333332 233367889999
Q ss_pred CccchHHHHHHHhcCC
Q 039728 153 PPNEAWKLFCRKASGP 168 (263)
Q Consensus 153 s~~e~~~ll~~~~~~~ 168 (263)
+.++-.++|..++...
T Consensus 326 Tk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 326 TKDQIVEILQQRLSEE 341 (529)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999998654
No 122
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.47 E-value=1.6e-06 Score=79.07 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=82.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++++||+|+|||++|+++++. .... |+.+... +++... .+.....+...
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e--~~~~-----fi~v~~~--------~l~~~~------------vGese~~i~~~ 538 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATE--SGAN-----FIAVRGP--------EILSKW------------VGESEKAIREI 538 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--cCCC-----EEEEehH--------HHhhcc------------cCcHHHHHHHH
Confidence 3456899999999999999999983 3222 2332211 111111 01111122233
Q ss_pred HHHHhCCceEEEEEeCCCCc--------------hhHHHHHHhccCC--CCCcEEEEEeCchhhhhhhccC--CCcccee
Q 039728 87 LRGHLKDKNYMVVFDDVWKI--------------DFWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKSS--SPVHIHE 148 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~--------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~~--~~~~~~~ 148 (263)
+...-...+.+|+||++|.. ....++...+... ..+..||.||.........-.. .-...+.
T Consensus 539 f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~ 618 (733)
T TIGR01243 539 FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLIL 618 (733)
T ss_pred HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEE
Confidence 33333456899999999731 1233444444432 2344455566554333211111 1125788
Q ss_pred ccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 149 LETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
++..+.++-.++|+.+..+.. .. .......+++.+.|.-
T Consensus 619 v~~Pd~~~R~~i~~~~~~~~~--~~----~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 619 VPPPDEEARKEIFKIHTRSMP--LA----EDVDLEELAEMTEGYT 657 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCCC--CC----ccCCHHHHHHHcCCCC
Confidence 888899999999987664431 11 1123566777787764
No 123
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.47 E-value=7.3e-06 Score=65.32 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKN 53 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (263)
+.+.|.|++|+|||++|+.+.. ... .+ .+++++.......
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg--~~-~~~i~~~~~~~~~ 61 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRD--RP-VMLINGDAELTTS 61 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhC--CC-EEEEeCCccCCHH
Confidence 4677999999999999999987 232 22 3455555544433
No 124
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.9e-07 Score=70.51 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc--cCCceeEEEEeC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLK--THFSSRAWVTVG 47 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~--~~~~~~~~~~~~ 47 (263)
-.|++.+|||||.|||+|.+++++...++ ..|....-+.+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 36899999999999999999999965443 344444444443
No 125
>PRK08181 transposase; Validated
Probab=98.46 E-value=5.7e-07 Score=71.39 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
..-++|+|++|+|||.|+..+++. .......++|++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee
Confidence 456899999999999999999873 322233455654
No 126
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=9.3e-06 Score=66.67 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=61.9
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEe-CchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTT-RHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.-++|+|+++ +....+.+++.+...++++.+|++| +...+.+.+.+. ...+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR--cq~i~~~~~~~~~~~~~L~~~~-~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR--CRQFPMTVPAPEAAAAWLAAQG-VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc--CEEEEecCCCHHHHHHHHHHcC-CC-
Confidence 344588899998 4557788888888887777665555 445555554443 3789999999999999998752 11
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIV 197 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 197 (263)
. ...+...++|.|....
T Consensus 207 ------~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 207 ------D-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred ------h-----HHHHHHHcCCCHHHHH
Confidence 1 1235677888886433
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.45 E-value=9.4e-06 Score=62.63 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
...-++|+|+.|+|||++++++.+. ....- .--|.+.... -.....+...
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~--y~~~G--LRlIev~k~~--------------------------L~~l~~l~~~ 100 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNE--YADQG--LRLIEVSKED--------------------------LGDLPELLDL 100 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHH--HhhcC--ceEEEECHHH--------------------------hccHHHHHHH
Confidence 4456788999999999999999883 32221 1122222210 0011222333
Q ss_pred HHHHhCCceEEEEEeCCC---CchhHHHHHHhccCC----CCCcEEEEEeCchhhhh
Q 039728 87 LRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDN----KKCGRIIVTTRHMNVAK 136 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~----~~~~~iliTsR~~~~~~ 136 (263)
++. ...+++|++||+. ....+..+...+... +.+..|..||......+
T Consensus 101 l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 101 LRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred Hhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 321 3468999999986 444566666655433 44545555665554443
No 128
>PRK08116 hypothetical protein; Validated
Probab=98.44 E-value=1.2e-06 Score=69.86 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
...+.|+|++|+|||.||.++++. .......++|++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence 346899999999999999999994 332233456665
No 129
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-06 Score=75.66 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
+..+-|.++||||+|||++|+.+.+ .-.-.| +.+..+ ++...+.. .+...+..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp--------EL~sk~vG------------eSEr~ir~ 518 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP--------ELFSKYVG------------ESERAIRE 518 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--------HHHHHhcC------------chHHHHHH
Confidence 4567789999999999999999999 333333 333321 11221211 11222333
Q ss_pred HHHHHhCCceEEEEEeCCCC-------------chhHHHHHHhccCCCCCcEEEE---EeCchhhhhhh-ccCCCcccee
Q 039728 86 TLRGHLKDKNYMVVFDDVWK-------------IDFWGDVEHALLDNKKCGRIIV---TTRHMNVAKAC-KSSSPVHIHE 148 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~-------------~~~~~~l~~~l~~~~~~~~ili---TsR~~~~~~~~-~~~~~~~~~~ 148 (263)
.+..+-.--+.+++||++|. ...+.+++..+........|+| |-|....-..+ +...-++.+.
T Consensus 519 iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiy 598 (693)
T KOG0730|consen 519 VFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIY 598 (693)
T ss_pred HHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEe
Confidence 33333334679999999983 2235566665554433333443 33333222221 1111226788
Q ss_pred ccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 149 LETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
++.-+.+--.++|+.++.+.. ... .-...+|++.+.|.-
T Consensus 599 VplPD~~aR~~Ilk~~~kkmp--~~~----~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 599 VPLPDLEARLEILKQCAKKMP--FSE----DVDLEELAQATEGYS 637 (693)
T ss_pred ecCccHHHHHHHHHHHHhcCC--CCc----cccHHHHHHHhccCC
Confidence 888888888999999886652 111 134556666666654
No 130
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.5e-06 Score=75.80 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=76.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
.-+.++++++||||+|||+|++.+++ .....| +-++++.--+..++--.--..++ .. ...++
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHRRTYIG---------am----PGrIi 408 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHRRTYIG---------AM----PGKII 408 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccccccccc---------cC----ChHHH
Confidence 44568999999999999999999998 455444 23444443222221000000000 01 11222
Q ss_pred HHHHHHhCCceEEEEEeCCCC------chhHHHHHHhccCCCC-------------Cc-EEEEEeCchhhhhhhccCCCc
Q 039728 85 TTLRGHLKDKNYMVVFDDVWK------IDFWGDVEHALLDNKK-------------CG-RIIVTTRHMNVAKACKSSSPV 144 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~------~~~~~~l~~~l~~~~~-------------~~-~iliTsR~~~~~~~~~~~~~~ 144 (263)
+.++. .+.++-|++||++|. -+.-.+++..+.+.++ -| .++|+|-+.--.-.....++.
T Consensus 409 Q~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM 487 (782)
T COG0466 409 QGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM 487 (782)
T ss_pred HHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcce
Confidence 22322 245677999999982 1122333333322111 12 345555543210001112233
Q ss_pred cceeccCCCccchHHHHHHHhc
Q 039728 145 HIHELETLPPNEAWKLFCRKAS 166 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~~ 166 (263)
+++++.+.+.+|-.++-++++.
T Consensus 488 EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 488 EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eeeeecCCChHHHHHHHHHhcc
Confidence 8999999999999999888764
No 131
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.38 E-value=4e-05 Score=63.79 Aligned_cols=124 Identities=8% Similarity=0.049 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCchh-----HHHHHHhccC--CCCCcEEEEEeCchhhhhhhc---cCCCccceeccCCCccchHHHHHHH
Q 039728 95 NYMVVFDDVWKIDF-----WGDVEHALLD--NKKCGRIIVTTRHMNVAKACK---SSSPVHIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 95 ~~LlvlD~~~~~~~-----~~~l~~~l~~--~~~~~~iliTsR~~~~~~~~~---~~~~~~~~~l~~ls~~e~~~ll~~~ 164 (263)
+-++|+||+..... ++.+..+-.. ..+-.+||++|-+........ ....++.+.+...+++-|..|...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 56899999863221 1222211110 122347887776654333332 3345578999999999999999999
Q ss_pred hcCCCCC-----------CCC----ChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHH
Q 039728 165 ASGPSSG-----------GCC----PSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFD 218 (263)
Q Consensus 165 ~~~~~~~-----------~~~----~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~ 218 (263)
+...... ... ...........++..||=-.-|..++++++....+.+-..+...
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8654110 000 12355677888899999999999999999987653334444443
No 132
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=7.9e-06 Score=65.88 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=82.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+=|.+|||||+|||-||+++++ +.... |+.+.. .++++..... ...+++
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~--~T~At-----FIrvvg--------SElVqKYiGE-------------GaRlVR 234 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVAN--QTDAT-----FIRVVG--------SELVQKYIGE-------------GARLVR 234 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCce-----EEEecc--------HHHHHHHhcc-------------chHHHH
Confidence 3456689999999999999999999 34433 344332 1222322211 012222
Q ss_pred HHHHHh-CCceEEEEEeCCCC-------------chh---HHHHHHhccCC--CCCcEEEEEeCchhhhhhh--ccCCCc
Q 039728 86 TLRGHL-KDKNYMVVFDDVWK-------------IDF---WGDVEHALLDN--KKCGRIIVTTRHMNVAKAC--KSSSPV 144 (263)
Q Consensus 86 ~~~~~l-~~~~~LlvlD~~~~-------------~~~---~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~--~~~~~~ 144 (263)
.+.... ...+.+|++|++|. .+. +-+|+..+... ..+.|||..|...+.+... ....-+
T Consensus 235 elF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~D 314 (406)
T COG1222 235 ELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFD 314 (406)
T ss_pred HHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCccc
Confidence 232222 35689999999982 111 22333333333 3455888877665443221 111112
Q ss_pred cceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 145 HIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
..++++.-+.+.-.++|+=+..+... .. .-..+.+++.|.|.-
T Consensus 315 RkIEfplPd~~gR~~Il~IHtrkM~l--~~----dvd~e~la~~~~g~s 357 (406)
T COG1222 315 RKIEFPLPDEEGRAEILKIHTRKMNL--AD----DVDLELLARLTEGFS 357 (406)
T ss_pred ceeecCCCCHHHHHHHHHHHhhhccC--cc----CcCHHHHHHhcCCCc
Confidence 56788865666666777766544321 11 123455666666654
No 133
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.35 E-value=1.1e-05 Score=62.48 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEe
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTV 46 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~ 46 (263)
.++|.|++|+|||+++..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 567899999999999999998 56778877765543
No 134
>PRK06526 transposase; Provisional
Probab=98.34 E-value=1.3e-06 Score=68.89 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.+.++|+|++|+|||+||..+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHH
Confidence 3456899999999999999998874
No 135
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.33 E-value=8.1e-06 Score=63.06 Aligned_cols=153 Identities=17% Similarity=0.107 Sum_probs=83.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-|+.+||+|+|||.+|+++.+..++ . ++.+... +++.... +....+.-..
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kv--p-----~l~vkat--------~liGehV------------Gdgar~Ihel 202 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKV--P-----LLLVKAT--------ELIGEHV------------GDGARRIHEL 202 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCC--c-----eEEechH--------HHHHHHh------------hhHHHHHHHH
Confidence 3567889999999999999999994322 1 2333221 1111110 0001111222
Q ss_pred HHHHhCCceEEEEEeCCCC--------------chhHHHHHHhccCC--CCCcEEEEEeCchhhh-hhhccCCCccceec
Q 039728 87 LRGHLKDKNYMVVFDDVWK--------------IDFWGDVEHALLDN--KKCGRIIVTTRHMNVA-KACKSSSPVHIHEL 149 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~--------------~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l 149 (263)
....-..-++++++|++|. .+..+.++..+... ..|...|-.|.+...+ +...+... +.++.
T Consensus 203 y~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFE-eEIEF 281 (368)
T COG1223 203 YERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFE-EEIEF 281 (368)
T ss_pred HHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhh-heeee
Confidence 2222235689999999872 12344455444332 3455555555544333 33333221 45677
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
.--+.+|-.+++...+..- +-..+...+.++++++|+.
T Consensus 282 ~LP~~eEr~~ile~y~k~~------Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 282 KLPNDEERLEILEYYAKKF------PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred eCCChHHHHHHHHHHHHhC------CCccccCHHHHHHHhCCCC
Confidence 7778888899988887544 1112233667777777764
No 136
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.2e-05 Score=68.71 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=90.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
....|.|.|+.|+|||+|++++++... +..+-++.++++..-... .+..+.+ .+-..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~--~~e~iQk--------------------~l~~v 486 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGS--SLEKIQK--------------------FLNNV 486 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccch--hHHHHHH--------------------HHHHH
Confidence 356789999999999999999999543 334445556666543211 1222211 12233
Q ss_pred HHHHhCCceEEEEEeCCCCch-----------h--------HHHHHHhccCCCCCcE--EEEEeCchhhhhhhccCC-C-
Q 039728 87 LRGHLKDKNYMVVFDDVWKID-----------F--------WGDVEHALLDNKKCGR--IIVTTRHMNVAKACKSSS-P- 143 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~-----------~--------~~~l~~~l~~~~~~~~--iliTsR~~~~~~~~~~~~-~- 143 (263)
+...+...|-++||||+|... . +.++...+. ..+.+ +|-|..........-... .
T Consensus 487 fse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~F 564 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLF 564 (952)
T ss_pred HHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccce
Confidence 444556788999999997211 1 111111111 22333 333443322221111110 0
Q ss_pred ccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 039728 144 VHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL-PLAIVAVGGL 202 (263)
Q Consensus 144 ~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~~ 202 (263)
.....++.+..++-.++++....... .....+.+.-+..+|+|. |.-+.++..+
T Consensus 565 q~~~~L~ap~~~~R~~IL~~~~s~~~-----~~~~~~dLd~ls~~TEGy~~~DL~ifVeR 619 (952)
T KOG0735|consen 565 QIVIALPAPAVTRRKEILTTIFSKNL-----SDITMDDLDFLSVKTEGYLATDLVIFVER 619 (952)
T ss_pred EEEEecCCcchhHHHHHHHHHHHhhh-----hhhhhHHHHHHHHhcCCccchhHHHHHHH
Confidence 13577888888888888887765432 112233444488889887 6666655544
No 137
>PRK09183 transposase/IS protein; Provisional
Probab=98.33 E-value=2.6e-06 Score=67.60 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...++|+|++|+|||+|+..++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456889999999999999999773
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=8.7e-06 Score=72.42 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=34.7
Q ss_pred cceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 145 HIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
..+.+.+++.+|..+++++.+.... .. -.++..+.|.+.+..-+.++..++..
T Consensus 346 ~~i~~~pls~edi~~Il~~~a~~~~--v~---ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 346 AEVFFEPLTPEDIALIVLNAAEKIN--VH---LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 5678999999999999998875431 11 12455566666655446666666443
No 139
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.8e-05 Score=64.84 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=45.5
Q ss_pred ceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHH
Q 039728 94 KNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 94 ~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~ 164 (263)
++-++|+|+++ +....+.+...+.....+..+|++|.+.. +...+... ...+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR--c~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR--CRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH--hhhhcCCCCCHHHHHHHHHhc
Confidence 33455678887 34455666666665555666777777644 33333332 378899999999999888764
No 140
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.3e-05 Score=68.59 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
..-|.++|++|+|||-||.++... .. .-|+++..+. ++...... +.+.....+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~--~~-----~~fisvKGPE--------lL~KyIGa------------SEq~vR~lF 753 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASN--SN-----LRFISVKGPE--------LLSKYIGA------------SEQNVRDLF 753 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhh--CC-----eeEEEecCHH--------HHHHHhcc------------cHHHHHHHH
Confidence 345789999999999999999883 22 2356766532 22222111 122233333
Q ss_pred HHHhCCceEEEEEeCCCC-------------chhHHHHHHhccCCC--CCcEEE-EEeCchhhhhhh-ccCCCccceecc
Q 039728 88 RGHLKDKNYMVVFDDVWK-------------IDFWGDVEHALLDNK--KCGRII-VTTRHMNVAKAC-KSSSPVHIHELE 150 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~-------------~~~~~~l~~~l~~~~--~~~~il-iTsR~~~~~~~~-~~~~~~~~~~l~ 150 (263)
.++-..+|++|+||++|+ ....++++..+.... .|.-|+ -|||..-.-+.. +...-++.+.-+
T Consensus 754 ~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~ 833 (952)
T KOG0735|consen 754 ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCP 833 (952)
T ss_pred HHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCC
Confidence 333356999999999984 234566766655432 244343 377765333222 111122456666
Q ss_pred CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChh
Q 039728 151 TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPL 194 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 194 (263)
.-++.|-.++|......- ........+.++.+++|+.-
T Consensus 834 ~P~~~eRl~il~~ls~s~------~~~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 834 LPDEPERLEILQVLSNSL------LKDTDVDLECLAQKTDGFTG 871 (952)
T ss_pred CCCcHHHHHHHHHHhhcc------CCccccchHHHhhhcCCCch
Confidence 667788888887765422 22224567778888888764
No 141
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.26 E-value=1.2e-05 Score=59.22 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=37.4
Q ss_pred ceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCC
Q 039728 94 KNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLP 153 (263)
Q Consensus 94 ~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls 153 (263)
..=++|+|+++ +.+..+.|++.+...+.++.+|++|++.. +.....++ ...+.+.++|
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR--c~~i~~~~ls 162 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR--CQVIRFRPLS 162 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT--SEEEEE----
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh--ceEEecCCCC
Confidence 45688999999 45677888888888888888888887754 44444433 2567776654
No 142
>PRK06921 hypothetical protein; Provisional
Probab=98.25 E-value=9.1e-06 Score=64.73 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccC-CceeEEEEe
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH-FSSRAWVTV 46 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~-~~~~~~~~~ 46 (263)
....+.++|++|+|||.|+.++++. .... ...++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 4567899999999999999999984 3332 344667664
No 143
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.25 E-value=5.9e-06 Score=75.38 Aligned_cols=154 Identities=12% Similarity=0.051 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++++.+++. .... .+.++.... .... .+.....+...
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~--~~~~---~i~i~~~~i----------~~~~------------~g~~~~~l~~l 263 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANE--AGAY---FISINGPEI----------MSKY------------YGESEERLREI 263 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHH--hCCe---EEEEecHHH----------hccc------------ccHHHHHHHHH
Confidence 3466899999999999999999883 2221 122222110 0000 00111122233
Q ss_pred HHHHhCCceEEEEEeCCCCc-------------hhHHHHHHhccCCCC-CcEEEE-EeCchhhh-hhhccCCC-ccceec
Q 039728 87 LRGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALLDNKK-CGRIIV-TTRHMNVA-KACKSSSP-VHIHEL 149 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~~~-~~~ili-TsR~~~~~-~~~~~~~~-~~~~~l 149 (263)
+.......+.+|+||+++.. ....++...+..... +..++| +|...... ........ ...+.+
T Consensus 264 f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i 343 (733)
T TIGR01243 264 FKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVI 343 (733)
T ss_pred HHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEe
Confidence 33333456789999998731 122334444433222 333444 44433221 11111000 145777
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
...+.++-.++++....... .........+++.+.|..
T Consensus 344 ~~P~~~~R~~Il~~~~~~~~------l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 344 RVPDKRARKEILKVHTRNMP------LAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred CCcCHHHHHHHHHHHhcCCC------CccccCHHHHHHhCCCCC
Confidence 77788888888886654321 001223566777777764
No 144
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.24 E-value=1.3e-05 Score=62.63 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=50.5
Q ss_pred EEeCchhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q 039728 127 VTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS 204 (263)
Q Consensus 127 iTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 204 (263)
-|||.-........... ....++-.+.+|..+++.+.+..-. ....++.+.+|++...|-|.-..-+.++++
T Consensus 157 ATTr~G~lt~PLrdRFG-i~~rlefY~~~eL~~Iv~r~a~~l~-----i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 157 ATTRAGMLTNPLRDRFG-IIQRLEFYTVEELEEIVKRSAKILG-----IEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eccccccccchhHHhcC-CeeeeecCCHHHHHHHHHHHHHHhC-----CCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 48887655544443322 3577888899999999988764331 233367888999999999988777777664
No 145
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=1e-05 Score=63.03 Aligned_cols=144 Identities=11% Similarity=0.108 Sum_probs=89.5
Q ss_pred ceE-EEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 94 KNY-MVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 94 ~~~-LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++ ++|+-.+|+ .+....+.+-...-..++++|+.+.+. .+....... .-.++++..+.+|....+.+......
T Consensus 126 r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSR--Cl~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSR--CLFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred cceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhh--eeEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 444 667777763 333344444444445678888866553 222222222 25789999999999999998876542
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccC---------CCCHHHHHHHHHHhccccCCCCCchhHHHHHHHh
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTK---------NRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEG 240 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 240 (263)
-....+.+++|+++++|+-.-.-++....+-+ ..+.-+|...+.++......+.....+..+=..-
T Consensus 204 -----l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~L 278 (351)
T KOG2035|consen 204 -----LQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRL 278 (351)
T ss_pred -----ccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 22337899999999999976555555555322 2245689998888776665554444444444444
Q ss_pred hccC
Q 039728 241 YHDL 244 (263)
Q Consensus 241 ~~~L 244 (263)
|+-|
T Consensus 279 YeLL 282 (351)
T KOG2035|consen 279 YELL 282 (351)
T ss_pred HHHH
Confidence 4433
No 146
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.23 E-value=6.9e-05 Score=61.80 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc-cCCceeEEEEeCCCC----CHHHHHHHHHHHHhh
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLK-THFSSRAWVTVGKEY----NKNELLRTVIKEFHS 65 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~ 65 (263)
....+|+|.|+=|+|||++...+.+..... .....+++++.-... ....++..+..++..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~ 82 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEK 82 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHH
Confidence 678899999999999999999998843332 112234455433322 234455555555543
No 147
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.22 E-value=7.4e-06 Score=60.19 Aligned_cols=39 Identities=36% Similarity=0.420 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY 50 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (263)
+++|+|++|+|||+++..++.. ....-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3689999999999999999883 33334456787776543
No 148
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.21 E-value=2.1e-06 Score=64.13 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEe
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTV 46 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~ 46 (263)
..-++++|++|+|||.||..+++. ....-..+.|++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec
Confidence 456899999999999999999884 2222234566653
No 149
>PRK12377 putative replication protein; Provisional
Probab=98.20 E-value=6.4e-06 Score=64.66 Aligned_cols=38 Identities=32% Similarity=0.225 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
...+.|+|++|+|||+||.++++. .......++|++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 357899999999999999999994 33333345666543
No 150
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.6e-05 Score=69.39 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=87.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.+.++||+|+|||.||++++. ..... |+.+... + +... ..+........
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~-----fi~v~~~-~-------l~sk------------~vGesek~ir~ 326 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSR-----FISVKGS-E-------LLSK------------WVGESEKNIRE 326 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCe-----EEEeeCH-H-------Hhcc------------ccchHHHHHHH
Confidence 3455899999999999999999998 33333 3333322 1 1111 11111223333
Q ss_pred HHHHHhCCceEEEEEeCCCC-------------chhHHHHHHhccCC--CCCcEEEEEeCchhhhhhhccC--CCcccee
Q 039728 86 TLRGHLKDKNYMVVFDDVWK-------------IDFWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKSS--SPVHIHE 148 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~-------------~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~~--~~~~~~~ 148 (263)
.+..+....+++|++|++|. .....++...+... ..+..+|-+|............ .=...+.
T Consensus 327 ~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~ 406 (494)
T COG0464 327 LFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIY 406 (494)
T ss_pred HHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEee
Confidence 34444456889999999982 13455666665433 3343444455444333221111 1125788
Q ss_pred ccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCC
Q 039728 149 LETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEG 191 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 191 (263)
++.-+.++..+.|+.+...... .....-..+.+++.+.|
T Consensus 407 v~~pd~~~r~~i~~~~~~~~~~----~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 407 VPLPDLEERLEIFKIHLRDKKP----PLAEDVDLEELAEITEG 445 (494)
T ss_pred cCCCCHHHHHHHHHHHhcccCC----cchhhhhHHHHHHHhcC
Confidence 9999999999999999864321 11223344555555555
No 151
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.20 E-value=8.4e-06 Score=74.69 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=69.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
.+.++++++||+|+|||++|+.++.. ....| +.++.....+... +..... ...+.....+..
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~--------i~g~~~-----~~~g~~~g~i~~ 406 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAE--------IRGHRR-----TYVGAMPGRIIQ 406 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHH--------HcCCCC-----ceeCCCCchHHH
Confidence 34568999999999999999999983 33222 2233332222111 111100 000111112223
Q ss_pred HHHHHhCCceEEEEEeCCCCch------hHHHHHHhccC--------C-------CCCcEEEEEeCchhhh-hhhccCCC
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID------FWGDVEHALLD--------N-------KKCGRIIVTTRHMNVA-KACKSSSP 143 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~------~~~~l~~~l~~--------~-------~~~~~iliTsR~~~~~-~~~~~~~~ 143 (263)
.+.... ..+-+++||++|... ..+.+...+.. . ..+..+|.||...... ... ..+
T Consensus 407 ~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L--~~R 483 (775)
T TIGR00763 407 GLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPL--LDR 483 (775)
T ss_pred HHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHH--hCC
Confidence 333322 233478899998421 12333333221 0 0123344455443221 222 223
Q ss_pred ccceeccCCCccchHHHHHHHh
Q 039728 144 VHIHELETLPPNEAWKLFCRKA 165 (263)
Q Consensus 144 ~~~~~l~~ls~~e~~~ll~~~~ 165 (263)
...+++.+++.++..++++..+
T Consensus 484 ~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 484 MEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred eeEEecCCCCHHHHHHHHHHHH
Confidence 4689999999999988887654
No 152
>PRK04132 replication factor C small subunit; Provisional
Probab=98.19 E-value=6.2e-05 Score=68.62 Aligned_cols=160 Identities=16% Similarity=0.059 Sum_probs=98.4
Q ss_pred EEc--CCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHHH
Q 039728 13 VVG--VGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRG 89 (263)
Q Consensus 13 i~G--~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (263)
+.| |.++||||+|..+++..- ...+. ..+-++..+... .+.+++++..+.....
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rg-id~IR~iIk~~a~~~~--------------------- 625 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELF-GENWRHNFLELNASDERG-INVIREKVKEFARTKP--------------------- 625 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCccc-HHHHHHHHHHHHhcCC---------------------
Confidence 347 889999999999998421 22222 344555554323 3344444444322100
Q ss_pred HhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHhc
Q 039728 90 HLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKAS 166 (263)
Q Consensus 90 ~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~ 166 (263)
....+.-++|+|++|.. ...+.+...+...+..+++|++|.+.. +.....+ +...+.+.+++.++....+.....
T Consensus 626 ~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 626 IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred cCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHHHHHHHHHHHH
Confidence 00123469999999954 356667777666566777777666643 3333333 347899999999999988887654
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 167 GPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
... ....++.+..|++.++|.+...-.+...
T Consensus 704 ~Eg-----i~i~~e~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 704 NEG-----LELTEEGLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred hcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 321 1112568889999999988655444443
No 153
>PRK10536 hypothetical protein; Provisional
Probab=98.19 E-value=2.3e-05 Score=61.25 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=29.0
Q ss_pred HhCCceE---EEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCch
Q 039728 90 HLKDKNY---MVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHM 132 (263)
Q Consensus 90 ~l~~~~~---LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 132 (263)
.++++++ ++|+|++++... .++...+...+.++++|++--..
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGDIT 213 (262)
T ss_pred HhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCChh
Confidence 4455554 899999986554 44555566667899999887653
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.17 E-value=1.1e-05 Score=74.33 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=51.0
Q ss_pred CceEEEEEeCCCCch---------hHHHHHHhccCCCCCcEEEEEeCchhhhhhhc----cCCCccceeccCCCccchHH
Q 039728 93 DKNYMVVFDDVWKID---------FWGDVEHALLDNKKCGRIIVTTRHMNVAKACK----SSSPVHIHELETLPPNEAWK 159 (263)
Q Consensus 93 ~~~~LlvlD~~~~~~---------~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~----~~~~~~~~~l~~ls~~e~~~ 159 (263)
+++++|++|+++... +...++..... ....++|-+|..++...... ...+++.+.+++++.++...
T Consensus 279 ~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~ 357 (852)
T TIGR03345 279 PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIR 357 (852)
T ss_pred CCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHH
Confidence 467999999997421 11112222222 12235666666543321111 12234789999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 160 LFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 160 ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
+|+.....-. ........++....+++.+.+..
T Consensus 358 iL~~~~~~~e-~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 358 MLRGLAPVLE-KHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHHHHhhh-hcCCCeeCHHHHHHHHHHccccc
Confidence 9754432110 00011222455666666665443
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.17 E-value=9.9e-06 Score=73.80 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=68.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc---cccCCc-eeEE-EEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDG---LKTHFS-SRAW-VTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEME 82 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~---~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 82 (263)
..-++++|++|+|||+++..++.... +...+. ..+| ++.. .+.... .. ....+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------~l~a~~----------~~-~g~~e~ 261 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------SLLAGT----------KY-RGDFEE 261 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------HHhhhc----------cc-cchHHH
Confidence 44568999999999999999988421 111111 1222 2211 111000 00 001223
Q ss_pred HHHHHHHHh-CCceEEEEEeCCCCch----------hHHHHHHhccCCCCCcEEEEEeCchhhhhhh----ccCCCccce
Q 039728 83 LITTLRGHL-KDKNYMVVFDDVWKID----------FWGDVEHALLDNKKCGRIIVTTRHMNVAKAC----KSSSPVHIH 147 (263)
Q Consensus 83 ~~~~~~~~l-~~~~~LlvlD~~~~~~----------~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~----~~~~~~~~~ 147 (263)
.++.+.+.+ ..++.+|++|+++... ....++...... ...++|-+|...+..... ....+++.+
T Consensus 262 ~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i 340 (731)
T TIGR02639 262 RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GKLRCIGSTTYEEYKNHFEKDRALSRRFQKI 340 (731)
T ss_pred HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CCeEEEEecCHHHHHHHhhhhHHHHHhCceE
Confidence 333333333 3457899999998321 122233222221 123455555543221111 111234679
Q ss_pred eccCCCccchHHHHHHHh
Q 039728 148 ELETLPPNEAWKLFCRKA 165 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~ 165 (263)
.++.++.++..++++...
T Consensus 341 ~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 341 DVGEPSIEETVKILKGLK 358 (731)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998554
No 156
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.16 E-value=1.2e-05 Score=58.37 Aligned_cols=122 Identities=18% Similarity=0.119 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE---eCCCCCHHHHHHHHHHHHhh-ccCCCCc-----ccccccc
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT---VGKEYNKNELLRTVIKEFHS-FSGQPTP-----VEIHKME 79 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~-~~~~~~~-----~~~~~~~ 79 (263)
..|-|++..|.||||+|...+.+. ....+ .+.++. .........++..+ ..+.. ..+.... .......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 467888888999999998877742 22233 344433 32223333333333 11110 1111100 0000011
Q ss_pred HHHHHHHHHHHhCCce-EEEEEeCCC-----CchhHHHHHHhccCCCCCcEEEEEeCchh
Q 039728 80 EMELITTLRGHLKDKN-YMVVFDDVW-----KIDFWGDVEHALLDNKKCGRIIVTTRHMN 133 (263)
Q Consensus 80 ~~~~~~~~~~~l~~~~-~LlvlD~~~-----~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 133 (263)
.....+..++.+.... =|+|||++- ..-..+++...+...+.+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1123333444444433 499999975 22344566667777777889999999964
No 157
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.13 E-value=1.5e-05 Score=65.66 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCC-ce-eEEEEeCC-CCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHF-SS-RAWVTVGK-EYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
..++|+|++|+|||||++++++. ..... +. ++|+.+.+ ..+..++...+...+........ ............
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~--~~~~~~v~~~~~ 209 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP--PDEHIRVAELVL 209 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC--HHHHHHHHHHHH
Confidence 34589999999999999998883 33322 22 34555544 45677877777775543221111 111111111111
Q ss_pred HHHHHh--CCceEEEEEeCCC
Q 039728 86 TLRGHL--KDKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l--~~~~~LlvlD~~~ 104 (263)
.+.+++ .+++++||+|++.
T Consensus 210 ~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 210 ERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHcCCCEEEEEeCcH
Confidence 222222 4789999999986
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=2.3e-05 Score=69.38 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..++++|+|++|+||||+++.++..
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999873
No 159
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.11 E-value=1.3e-05 Score=65.06 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-+.|+|++|+|||.|+.++++.. ...-..+.|+... .++..+....... +....++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~~~------------~~~~~l~- 213 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSISDG------------SVKEKID- 213 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHhcC------------cHHHHHH-
Confidence 45678999999999999999999953 2222234555443 3334443332110 1112222
Q ss_pred HHHHhCCceEEEEEeCCCC--chhHH--HHHHhccC-C-CCCcEEEEEeCc
Q 039728 87 LRGHLKDKNYMVVFDDVWK--IDFWG--DVEHALLD-N-KKCGRIIVTTRH 131 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~--~~~~~--~l~~~l~~-~-~~~~~iliTsR~ 131 (263)
.+. +.=||||||+.. ...|. ++...+.. . ..+..+|+||..
T Consensus 214 ---~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 214 ---AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ---Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 222 345899999962 22332 34333322 2 234467777764
No 160
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.10 E-value=2e-05 Score=70.70 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
+-++|+|++|+|||++++.++.. ....| +.++.... .. ... ..........+.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~~---~~-------~~~------------g~~~~~~~~~f~ 238 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDF---VE-------MFV------------GVGASRVRDMFE 238 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHHh---HH-------hhh------------cccHHHHHHHHH
Confidence 34899999999999999999883 22221 22222110 00 000 001112222233
Q ss_pred HHhCCceEEEEEeCCCCch----------------hHHHHHHhccCC--CCCcEEEEEeCchhhhhhhccC--CCcccee
Q 039728 89 GHLKDKNYMVVFDDVWKID----------------FWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKSS--SPVHIHE 148 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~~----------------~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~~--~~~~~~~ 148 (263)
......++++++|++|... .+.+++..+... ..+..+|.||............ .-...+.
T Consensus 239 ~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~ 318 (644)
T PRK10733 239 QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 318 (644)
T ss_pred HHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEE
Confidence 3334568899999997420 123333333222 2233445566655433221111 1125677
Q ss_pred ccCCCccchHHHHHHHhcCC
Q 039728 149 LETLPPNEAWKLFCRKASGP 168 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~ 168 (263)
++..+.++-.+++..+....
T Consensus 319 v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 319 VGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred cCCCCHHHHHHHHHHHhhcC
Confidence 88888888888888877543
No 161
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.09 E-value=2.2e-05 Score=61.45 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
...++++|++|+|||+|+.++++. .......+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 357899999999999999999984 333333456664
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.09 E-value=0.00013 Score=67.59 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
...++++||+|+|||++|+.+... ........+.+++..
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSE 633 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechh
Confidence 456889999999999999999883 322222344555543
No 163
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.09 E-value=1.6e-05 Score=68.24 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=68.8
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
++.=++|+|+++ +...++.++.-+...+....+|+.|.+.. +.....+ +.+.+.+..++.++....+...+....
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcC
Confidence 345589999998 67789999999888888887776666543 3322222 338899999999999999998886542
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChh
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPL 194 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl 194 (263)
....++.+.-|.+..+|...
T Consensus 196 -----I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 196 -----INIEEDALSLIARAAEGSLR 215 (515)
T ss_pred -----CccCHHHHHHHHHHcCCChh
Confidence 34445667777777777655
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.09 E-value=0.00024 Score=65.66 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++++||+|+|||.+|+.+...
T Consensus 595 p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 595 PLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999998873
No 165
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.09 E-value=4.1e-05 Score=63.09 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=36.9
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELET 151 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ 151 (263)
++.-++|+|++|. .+..+.+...+...+.+..+|++|... .+....... ...+++.+
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR--c~~i~f~~ 167 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSR--CQRIRFKP 167 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc--ceeeecCC
Confidence 4556899999984 445667777777777778888877743 333333332 25666666
No 166
>PRK04296 thymidine kinase; Provisional
Probab=98.08 E-value=8.4e-06 Score=61.71 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
.+++++|++|+||||++..++.+ ...+...++++.- ..+.......++..+.... . .............+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~----~-~~~~~~~~~~~~~~~ 73 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFKP--AIDDRYGEGKVVSRIGLSR----E-AIPVSSDTDIFELIE 73 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEec--cccccccCCcEecCCCCcc----c-ceEeCChHHHHHHHH
Confidence 57899999999999999999884 3333333444421 1011111222333332110 0 001112334444444
Q ss_pred HHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchh
Q 039728 89 GHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMN 133 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~ 133 (263)
. ..++.-++|+|+++-. +.+.++...+ ...|..+++|.+...
T Consensus 74 ~-~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 74 E-EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred h-hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4 2334458999999632 2233333332 244678999988743
No 167
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.08 E-value=0.00013 Score=66.69 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+.++||+|+|||.||+.+...
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHH
Confidence 346789999999999999999983
No 168
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.06 E-value=0.00021 Score=62.61 Aligned_cols=153 Identities=10% Similarity=0.083 Sum_probs=92.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc---cccCCceeE--EEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDG---LKTHFSSRA--WVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEE 80 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 80 (263)
...+++-|.|.+|+|||..+..+.+..+ .+..-+... .++...-....+.+..|...+... ...+
T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~----------~~~~ 489 (767)
T KOG1514|consen 420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGE----------RVTW 489 (767)
T ss_pred CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccC----------cccH
Confidence 4556999999999999999999988422 112222223 344445566777777777776433 2344
Q ss_pred HHHHHHHHHHhC-----CceEEEEEeCCCCchh--HHHHHHhccCC-CCCcEEEEEe--Cchhhh-----hhhccCCCcc
Q 039728 81 MELITTLRGHLK-----DKNYMVVFDDVWKIDF--WGDVEHALLDN-KKCGRIIVTT--RHMNVA-----KACKSSSPVH 145 (263)
Q Consensus 81 ~~~~~~~~~~l~-----~~~~LlvlD~~~~~~~--~~~l~~~l~~~-~~~~~iliTs--R~~~~~-----~~~~~~~~~~ 145 (263)
......+..++. .+++++++|++|..-. .+-+...+.|. .++++++|.+ ...+.. ......-...
T Consensus 490 ~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 490 DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccce
Confidence 555666665553 3568999999984221 22333334443 3566655433 222111 1222222335
Q ss_pred ceeccCCCccchHHHHHHHhcCC
Q 039728 146 IHELETLPPNEAWKLFCRKASGP 168 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~ 168 (263)
.+.+.+.+.++..++...++.+.
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcch
Confidence 78888999999999999888655
No 169
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.05 E-value=5.8e-05 Score=56.91 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHhCCceEEEEEeCCCC---chhHHHHHHhccCC-CCCcEEEEEeCchhhhhhhcc
Q 039728 85 TTLRGHLKDKNYMVVFDDVWK---IDFWGDVEHALLDN-KKCGRIIVTTRHMNVAKACKS 140 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~---~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~~~~~~ 140 (263)
-.+.+.|.-+|-++.||+..+ .+...+.+..+... ..|...++.|.+.........
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhh
Confidence 345667778888999999863 33333333333322 347789999998776665544
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.05 E-value=1.4e-05 Score=67.27 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELL 56 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (263)
.+.++++|++|+|||++|+.++........+..+.|+.+....+..+++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 4567889999999999999998854444455566688888766644443
No 171
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00025 Score=57.37 Aligned_cols=135 Identities=9% Similarity=0.071 Sum_probs=79.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCc---c----cccCCc-eeEEEEe-CCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNND---G----LKTHFS-SRAWVTV-GKEYNKNELLRTVIKEFHSFSGQPTPVEI 75 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~---~----~~~~~~-~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 75 (263)
+.-..+..++|+.|+||++++..+.... . .....+ ...+++. +..... +...+++..+....
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~v-d~Ir~l~~~~~~~~-------- 85 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSK-SEFLSAINKLYFSS-------- 85 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCH-HHHHHHHHHhccCC--------
Confidence 3456778899999999999999987632 0 011111 2223321 111111 11222222221110
Q ss_pred ccccHHHHHHHHHHHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCC
Q 039728 76 HKMEEMELITTLRGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETL 152 (263)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~l 152 (263)
.-.+.+-++|+|+++.. ...+.++..+...++++.+|++|.+ ..+.+.... +...+++.++
T Consensus 86 --------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S--Rc~~~~f~~l 149 (299)
T PRK07132 86 --------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS--RCQVFNVKEP 149 (299)
T ss_pred --------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh--CeEEEECCCC
Confidence 00135668888998843 4567788888888878877765544 444433333 2378999999
Q ss_pred CccchHHHHHHH
Q 039728 153 PPNEAWKLFCRK 164 (263)
Q Consensus 153 s~~e~~~ll~~~ 164 (263)
+.++..+.+...
T Consensus 150 ~~~~l~~~l~~~ 161 (299)
T PRK07132 150 DQQKILAKLLSK 161 (299)
T ss_pred CHHHHHHHHHHc
Confidence 999999888765
No 172
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.03 E-value=6.6e-05 Score=56.34 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=61.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC--CCCHHHH------HHHHHHHHhhccCCCCccccccc
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK--EYNKNEL------LRTVIKEFHSFSGQPTPVEIHKM 78 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~l~~~l~~~~~~~~~~~~~~~ 78 (263)
+..+++|.|+.|+|||||++.++.. .. ...+.++++..+ ....... ..+++..+........ .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~--~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~--~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL--LK-PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADR--PFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcC--CcccC
Confidence 4568899999999999999999873 22 234445443211 1111111 1112222221110000 11111
Q ss_pred c--HHHHHHHHHHHhCCceEEEEEeCCC---CchhHHHHHHhccCC-CC-CcEEEEEeCchhhh
Q 039728 79 E--EMELITTLRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDN-KK-CGRIIVTTRHMNVA 135 (263)
Q Consensus 79 ~--~~~~~~~~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~-~~-~~~iliTsR~~~~~ 135 (263)
+ ..+.+. +...+-..+-++++|+.. +......+...+... .. +..+|++|......
T Consensus 99 S~G~~qrl~-laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVL-LARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHH-HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 222222 334455677889999865 233333343333322 12 56788888776654
No 173
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2e-05 Score=68.97 Aligned_cols=145 Identities=19% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHH
Q 039728 2 VNGRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEM 81 (263)
Q Consensus 2 ~~~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 81 (263)
|.++.+.++++.+||||+|||++++.++. .....| +-++++.-.+..++--.--..+. .. ..
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHRRTYVG---------AM----PG 493 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHRRTYVG---------AM----PG 493 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccceeeec---------cC----Ch
Confidence 34567889999999999999999999998 445444 23445543333222111000010 01 11
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC------chhHHHHHHhccCC------------C-CCcEEEE-EeCch-hhhhhhcc
Q 039728 82 ELITTLRGHLKDKNYMVVFDDVWK------IDFWGDVEHALLDN------------K-KCGRIIV-TTRHM-NVAKACKS 140 (263)
Q Consensus 82 ~~~~~~~~~l~~~~~LlvlD~~~~------~~~~~~l~~~l~~~------------~-~~~~ili-TsR~~-~~~~~~~~ 140 (263)
..++.++. .+..+-|+.||++|. -+.-.+++..+... + .-++|+. .|-+. ...+. ..
T Consensus 494 kiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~-pL 571 (906)
T KOG2004|consen 494 KIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP-PL 571 (906)
T ss_pred HHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh-hh
Confidence 22222222 233566888999982 11223333333221 1 1234443 33321 11110 11
Q ss_pred CCCccceeccCCCccchHHHHHHHhc
Q 039728 141 SSPVHIHELETLPPNEAWKLFCRKAS 166 (263)
Q Consensus 141 ~~~~~~~~l~~ls~~e~~~ll~~~~~ 166 (263)
.++.+.+++.+...+|-..+-.+++.
T Consensus 572 lDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 572 LDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhhhheeeccCccHHHHHHHHHHhhh
Confidence 12237899999999998888877754
No 174
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.03 E-value=8.9e-05 Score=57.78 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=53.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCC--ccccccc
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPT--PVEIHKM 78 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~ 78 (263)
-....++.|+|++|+|||+++.+++....... .-..++|++......... +..+............ -......
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPER-LVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHH-HHHHHHHhccchhhhhccEEEEeCC
Confidence 35678999999999999999999876321111 114677888766544332 3333333221100000 0001112
Q ss_pred cHHHHHHHHHHHh----CCceEEEEEeCCC
Q 039728 79 EEMELITTLRGHL----KDKNYMVVFDDVW 104 (263)
Q Consensus 79 ~~~~~~~~~~~~l----~~~~~LlvlD~~~ 104 (263)
+.++....+.... ..+.-++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 3344444444333 2345599999985
No 175
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.02 E-value=8.2e-05 Score=55.44 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~ 29 (263)
...+++|.|+.|+|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45688999999999999999885
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.02 E-value=3.1e-05 Score=71.71 Aligned_cols=134 Identities=12% Similarity=0.107 Sum_probs=67.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccC-------CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCcccccccc
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH-------FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 79 (263)
....++|+|++|+|||+++..++.. .... ...+++++... ++... ... ..
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~~----------l~a~~----------~~~-g~ 249 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMGA----------LIAGA----------KYR-GE 249 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHHH----------Hhhcc----------hhh-hh
Confidence 3455678999999999999998874 2211 11122222211 00000 000 01
Q ss_pred HHHHHHHHHHHh--CCceEEEEEeCCCCch---------hHHHHHHhccCCCCCcEEEEEeCchhhhh----hhccCCCc
Q 039728 80 EMELITTLRGHL--KDKNYMVVFDDVWKID---------FWGDVEHALLDNKKCGRIIVTTRHMNVAK----ACKSSSPV 144 (263)
Q Consensus 80 ~~~~~~~~~~~l--~~~~~LlvlD~~~~~~---------~~~~l~~~l~~~~~~~~iliTsR~~~~~~----~~~~~~~~ 144 (263)
....++.+...+ .+++.+|++|+++... ....++..... ....++|.+|..+.... ......++
T Consensus 250 ~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~~~~~d~al~rRf 328 (852)
T TIGR03346 250 FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRKYIEKDAALERRF 328 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHHHhhcCHHHHhcC
Confidence 222222232222 2468999999998321 12222222221 12235555555443321 11112334
Q ss_pred cceeccCCCccchHHHHHHH
Q 039728 145 HIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~ 164 (263)
+.+.++..+.++...+++..
T Consensus 329 ~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 329 QPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred CEEEeCCCCHHHHHHHHHHH
Confidence 67889999999999988765
No 177
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.02 E-value=9.2e-05 Score=59.43 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=85.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC-CHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY-NKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
....|.|.||.|+|||+|......+ .+..-+..+-+...... ....++..+..++....... .....+....+.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~---~k~~gsfte~l~ 122 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI---VKSFGSFTENLS 122 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh---heeecccchhHH
Confidence 3456788999999999999888874 33333333444443322 23446667777776554332 112222333344
Q ss_pred HHHHHhC------CceEEEEEeCCCCch--h-----HHHHHHhccCCCCCcEEEEEeCchh---hhhhhccCCCc-ccee
Q 039728 86 TLRGHLK------DKNYMVVFDDVWKID--F-----WGDVEHALLDNKKCGRIIVTTRHMN---VAKACKSSSPV-HIHE 148 (263)
Q Consensus 86 ~~~~~l~------~~~~LlvlD~~~~~~--~-----~~~l~~~l~~~~~~~~iliTsR~~~---~~~~~~~~~~~-~~~~ 148 (263)
.+...+. +.++++|+|++|--. . ++-+...-....|-|-|-+|||-.. ...+......- .++-
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m 202 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFM 202 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeec
Confidence 4444443 236899999998311 1 1111111112345566778999742 12222222111 2455
Q ss_pred ccCCCccchHHHHHHHhcC
Q 039728 149 LETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~ 167 (263)
++.++.++-..++++.+.-
T Consensus 203 ~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 203 LPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred cCCCChHHHHHHHHHHhcC
Confidence 6677888999999988743
No 178
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=1.9e-05 Score=69.25 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=50.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHH
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMEL 83 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 83 (263)
+.+..+++.++|++|.||||||.-++++ ..| .++=++..+.-+...+-..+...+...
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~----------------- 379 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNH----------------- 379 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhc-----------------
Confidence 4567899999999999999999999983 234 255666666555444433333333211
Q ss_pred HHHHHHHh--CCceEEEEEeCCCC
Q 039728 84 ITTLRGHL--KDKNYMVVFDDVWK 105 (263)
Q Consensus 84 ~~~~~~~l--~~~~~LlvlD~~~~ 105 (263)
..+ .++|.-||+|++|-
T Consensus 380 -----s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 380 -----SVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred -----cccccCCCcceEEEecccC
Confidence 112 26888999999984
No 179
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.01 E-value=2.3e-05 Score=72.36 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc---cccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDG---LKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMEL 83 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 83 (263)
.+-++|+|++|+|||++|..++.... +..... ..+|. +.- . .++. .. ... ..++..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l~~----~----~l~a---g~-------~~~-ge~e~r 259 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-LDI----G----LLLA---GT-------KYR-GEFEER 259 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-eeH----H----HHhc---cC-------CCc-cHHHHH
Confidence 34567999999999999999987421 111111 22331 110 0 0110 00 000 112233
Q ss_pred HHHHHHHh-CCceEEEEEeCCCCc---------hhHHHHHHhccCCCCCcEEEEEeCchhhhhhh----ccCCCccceec
Q 039728 84 ITTLRGHL-KDKNYMVVFDDVWKI---------DFWGDVEHALLDNKKCGRIIVTTRHMNVAKAC----KSSSPVHIHEL 149 (263)
Q Consensus 84 ~~~~~~~l-~~~~~LlvlD~~~~~---------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~----~~~~~~~~~~l 149 (263)
++.+.+.+ ..++++|++|+++.. .....++......+ ..++|.+|..+...... .....+..+.+
T Consensus 260 l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v 338 (821)
T CHL00095 260 LKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYV 338 (821)
T ss_pred HHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEec
Confidence 33333332 346799999999721 11223333222222 23566666554432211 11123367888
Q ss_pred cCCCccchHHHHHHH
Q 039728 150 ETLPPNEAWKLFCRK 164 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~ 164 (263)
...+.++...+++..
T Consensus 339 ~ep~~~e~~aILr~l 353 (821)
T CHL00095 339 GEPSVEETIEILFGL 353 (821)
T ss_pred CCCCHHHHHHHHHHH
Confidence 888988988888643
No 180
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.01 E-value=0.00014 Score=53.75 Aligned_cols=52 Identities=8% Similarity=0.157 Sum_probs=33.9
Q ss_pred HHHHhCCceEEEEEeC----CCCchhHHHHHHhcc-CCCCCcEEEEEeCchhhhhhhc
Q 039728 87 LRGHLKDKNYMVVFDD----VWKIDFWGDVEHALL-DNKKCGRIIVTTRHMNVAKACK 139 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~----~~~~~~~~~l~~~l~-~~~~~~~iliTsR~~~~~~~~~ 139 (263)
+.+++-++|-+|+-|+ +|..-+|+-+ ..+. -...|..|++.|.+......+.
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 4455567888999995 5544444432 2332 2355889999999998876654
No 181
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=98.00 E-value=5.7e-05 Score=55.60 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=66.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeE--EEEeCCCCCHHHHHHHHHHHHh-hccCCCCcccccc-----c
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRA--WVTVGKEYNKNELLRTVIKEFH-SFSGQPTPVEIHK-----M 78 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~-----~ 78 (263)
....|-|++..|.||||.|...+.+. ....++..+ |+...........+..+ .+. ...+........+ .
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 34678888889999999998877642 233333222 44433233334444433 111 1111110000001 1
Q ss_pred cHHHHHHHHHHHhCCce-EEEEEeCCC-----CchhHHHHHHhccCCCCCcEEEEEeCchh
Q 039728 79 EEMELITTLRGHLKDKN-YMVVFDDVW-----KIDFWGDVEHALLDNKKCGRIIVTTRHMN 133 (263)
Q Consensus 79 ~~~~~~~~~~~~l~~~~-~LlvlD~~~-----~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 133 (263)
.........++.+.... =++|||++- ..-..+++...+...+++..+|+|-|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12233344455554444 499999975 22234466666777777889999999864
No 182
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.00 E-value=2e-05 Score=60.10 Aligned_cols=111 Identities=12% Similarity=0.174 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
.+++|.|++|+||||++..++.. ........++. ..++.... ... ...+..+. + .+.+.....+.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~--~~~-~~~~i~q~------~-vg~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFV--HES-KRSLINQR------E-VGLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCcccc--ccC-ccceeeec------c-cCCCccCHHHHHH
Confidence 47899999999999999988773 33232323332 22221100 000 00000000 0 0111123445566
Q ss_pred HHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhh
Q 039728 89 GHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVA 135 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 135 (263)
..+...+=++++|++.+.+.+....... ..|..++.|+......
T Consensus 69 ~aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 69 AALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred HHhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 7777777899999997766555444332 2345577777765544
No 183
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.99 E-value=0.00017 Score=58.80 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=35.7
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHH
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAI 196 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 196 (263)
.++++++|.+|+..++.......... .....+...+++....+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~--~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR--SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc--cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999887554211 11334556777777789999654
No 184
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.99 E-value=6.6e-05 Score=68.58 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=72.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..++++++||+|+||||+++.++. .....| +.++.+...+...+.... ... .+.........
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~-~~~------------~g~~~G~~~~~ 409 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR-RTY------------IGSMPGKLIQK 409 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch-hcc------------CCCCCcHHHHH
Confidence 456899999999999999999997 333222 223333322221111000 000 00001122233
Q ss_pred HHHHhCCceEEEEEeCCCCch------hHHHHHHhccCC---------------CCCcEEEEEeCchhhhhhhccCCCcc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID------FWGDVEHALLDN---------------KKCGRIIVTTRHMNVAKACKSSSPVH 145 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~------~~~~l~~~l~~~---------------~~~~~iliTsR~~~~~~~~~~~~~~~ 145 (263)
+.. .....-+++||++|... ..+.+...+... -.+..+|.|+.+..+..... .+..
T Consensus 410 l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl--~R~~ 486 (784)
T PRK10787 410 MAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLL--DRME 486 (784)
T ss_pred HHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHh--ccee
Confidence 322 12234478899998321 134444443321 12333445554443322222 3346
Q ss_pred ceeccCCCccchHHHHHHHhc
Q 039728 146 IHELETLPPNEAWKLFCRKAS 166 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~ 166 (263)
.+.+.+++.+|-.++.+.++.
T Consensus 487 ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 487 VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eeecCCCCHHHHHHHHHHhhh
Confidence 899999999999998887763
No 185
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00034 Score=58.45 Aligned_cols=169 Identities=15% Similarity=0.057 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
|--+++||||+|||+++.+.++.. .|+ ++=+.+....+..+ ++.|+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~yd-IydLeLt~v~~n~d-Lr~LL~--------------------------- 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYD-IYDLELTEVKLDSD-LRHLLL--------------------------- 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCc-eEEeeeccccCcHH-HHHHHH---------------------------
Confidence 345789999999999999999932 232 22223333222122 333222
Q ss_pred HHhCCceEEEEEeCCCCc--------------------hhHHHHHHhccCCCC---CcEEEE-EeCchhhhhhh--ccCC
Q 039728 89 GHLKDKNYMVVFDDVWKI--------------------DFWGDVEHALLDNKK---CGRIIV-TTRHMNVAKAC--KSSS 142 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~--------------------~~~~~l~~~l~~~~~---~~~ili-TsR~~~~~~~~--~~~~ 142 (263)
...+ +-+||++|+|.. --+.-|+..+...-. +-+||| ||...+.+... +...
T Consensus 283 -~t~~-kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGR 360 (457)
T KOG0743|consen 283 -ATPN-KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGR 360 (457)
T ss_pred -hCCC-CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCc
Confidence 2222 345667777621 012234444332211 225554 66665433221 1111
Q ss_pred CccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCC-CCHHHHHHHHHHh
Q 039728 143 PVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKN-RVVSEWKKLFDRL 220 (263)
Q Consensus 143 ~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~-~~~~~~~~~~~~~ 220 (263)
-+..+.+.-=+.+....|+...++... + .....+|.+...+.-+.=..++..+-... +....++.+.+.+
T Consensus 361 mDmhI~mgyCtf~~fK~La~nYL~~~~-----~---h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l 431 (457)
T KOG0743|consen 361 MDMHIYMGYCTFEAFKTLASNYLGIEE-----D---HRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEAL 431 (457)
T ss_pred ceeEEEcCCCCHHHHHHHHHHhcCCCC-----C---cchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 124577777788888888888887642 1 24444444454555444455555554433 3233444444433
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.98 E-value=5.7e-05 Score=69.84 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|++|+|||++|+.+.+
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 187
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.98 E-value=2.9e-05 Score=59.11 Aligned_cols=45 Identities=16% Similarity=-0.019 Sum_probs=30.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
.+++.+-++|.||||+||||-+..+++.......-+.+.-++.++
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 456778899999999999999888887533332333444444443
No 188
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.98 E-value=2.1e-05 Score=64.38 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
..+.++|++|+|||.|+..+++. .......++|++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH
Confidence 67999999999999999999984 33333356676643
No 189
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00011 Score=58.11 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
.-+-++++||+|.|||-||++++.. .. .-|+++.+.. +...+... .+.+++.
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATE--An-----STFFSvSSSD--------LvSKWmGE-------------SEkLVkn 216 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATE--AN-----STFFSVSSSD--------LVSKWMGE-------------SEKLVKN 216 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhh--cC-----CceEEeehHH--------HHHHHhcc-------------HHHHHHH
Confidence 3577899999999999999999983 22 2244554421 22222211 1122222
Q ss_pred HHHHh-CCceEEEEEeCCCC---------chhHHHHHHhc----cC---CCCCcEEEEEeCchhhhhh-hccCCCcccee
Q 039728 87 LRGHL-KDKNYMVVFDDVWK---------IDFWGDVEHAL----LD---NKKCGRIIVTTRHMNVAKA-CKSSSPVHIHE 148 (263)
Q Consensus 87 ~~~~l-~~~~~LlvlD~~~~---------~~~~~~l~~~l----~~---~~~~~~iliTsR~~~~~~~-~~~~~~~~~~~ 148 (263)
+.+.. .+++-+|++|++|+ .+.-..+...+ .. ...|..++-.|.-+-++.. +.-... +.+.
T Consensus 217 LFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFe-kRIY 295 (439)
T KOG0739|consen 217 LFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFE-KRIY 295 (439)
T ss_pred HHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhh-ccee
Confidence 22222 46889999999983 11112222222 11 1223333334443332221 111110 2344
Q ss_pred ccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 149 LETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
++--....-..+|.-+++.. +....+...+++.++++|..
T Consensus 296 IPLPe~~AR~~MF~lhlG~t-----p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 296 IPLPEAHARARMFKLHLGDT-----PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ccCCcHHHhhhhheeccCCC-----ccccchhhHHHHHhhcCCCC
Confidence 43333334445666666543 23444567778888888764
No 190
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.94 E-value=5.8e-05 Score=58.08 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=32.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....++.|+|++|+|||+++.+++.. .......++|++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC
Confidence 56789999999999999999998873 323345688998875
No 191
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.94 E-value=0.0002 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999874
No 192
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.94 E-value=0.0001 Score=58.42 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=93.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCH----HHHHHHHHHHHhhccCCC--Cc------
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNK----NELLRTVIKEFHSFSGQP--TP------ 72 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~--~~------ 72 (263)
..+.-+.+|+||.|+|||.|.+.+.....+..--+.++|+.-....-. ...-.+++..-....... .|
T Consensus 84 ~~qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~ 163 (369)
T PF02456_consen 84 GLQPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFR 163 (369)
T ss_pred CCCceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccc
Confidence 456677899999999999999999887666666677888774433221 122223332221111100 00
Q ss_pred -----------cccccccHHHHHHHHHHHhCCceEEEEEeCCC----CchhHHHHHHhcc----CCC---CCcEEEEEeC
Q 039728 73 -----------VEIHKMEEMELITTLRGHLKDKNYMVVFDDVW----KIDFWGDVEHALL----DNK---KCGRIIVTTR 130 (263)
Q Consensus 73 -----------~~~~~~~~~~~~~~~~~~l~~~~~LlvlD~~~----~~~~~~~l~~~l~----~~~---~~~~iliTsR 130 (263)
-...+.+...--..+.++.+..++-||+|+.- +......+...++ ... .|..++|.-.
T Consensus 164 P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLH 243 (369)
T PF02456_consen 164 PKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLH 243 (369)
T ss_pred ccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEec
Confidence 01222233333445556667789999999852 2233333333332 222 2446777766
Q ss_pred chhhhhhhccCCCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q 039728 131 HMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS 204 (263)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 204 (263)
+.........+ +..|....-..++.- ....-...+=|...+.|+|.+|.++...+-
T Consensus 244 NmnPR~d~gGN-------I~~LKiqAK~HIiSp-----------~~~p~QlsRFin~yt~glp~~i~~LLKdif 299 (369)
T PF02456_consen 244 NMNPRRDIGGN-------IANLKIQAKCHIISP-----------KMHPSQLSRFINNYTKGLPTAISLLLKDIF 299 (369)
T ss_pred cCCcccccCCC-------ccchhhhceeeeecC-----------CCCHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence 65544332121 111111111111111 111123444455677899998887777653
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.93 E-value=0.00015 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457899999999999999999873
No 194
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.92 E-value=3.2e-05 Score=61.14 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
+..-++++|++|+|||.||.++.+... ..-..+.|++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEHH
Confidence 455789999999999999999999543 333345565543
No 195
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.91 E-value=5.1e-05 Score=70.16 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....++++|++|+|||+++..++..
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHH
Confidence 3445678999999999999999884
No 196
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.90 E-value=7e-05 Score=58.04 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
....++.|+|++|+|||+++.+++.. ....-..++|++....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGL 58 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCC
Confidence 56789999999999999999999873 2223345778876543
No 197
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.90 E-value=7.6e-05 Score=58.15 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
....++.|+|++|+|||+++.+++.. .......++|++..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC
Confidence 55779999999999999999999874 32334567888877
No 198
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00027 Score=62.65 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=45.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
..=|.+|||||+|||-+|++++-.. . .-|+++..+ ++++....+ +++-..+.+
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEc--s-----L~FlSVKGP--------ELLNMYVGq------------SE~NVR~VF 757 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATEC--S-----LNFLSVKGP--------ELLNMYVGQ------------SEENVREVF 757 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhc--e-----eeEEeecCH--------HHHHHHhcc------------hHHHHHHHH
Confidence 5668899999999999999999832 1 225666653 233323222 122233333
Q ss_pred HHHhCCceEEEEEeCCCC
Q 039728 88 RGHLKDKNYMVVFDDVWK 105 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~ 105 (263)
.++=...|++|+||++|+
T Consensus 758 erAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHhhccCCeEEEeccccc
Confidence 333356899999999984
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=97.89 E-value=2e-05 Score=58.29 Aligned_cols=35 Identities=31% Similarity=0.582 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccc-cCCceeEE
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLK-THFSSRAW 43 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~-~~~~~~~~ 43 (263)
+.|.|+|++|+||||||+.+++..... -+++..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999853333 23444444
No 200
>PTZ00494 tuzin-like protein; Provisional
Probab=97.89 E-value=0.001 Score=55.92 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=82.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
....||++++|..|+|||+|.+..... ++. ..+|+++....+ -+..+++.+.-..-..-.+-. .-..+..
T Consensus 392 ~aHPRIvV~TG~~GcGKSslcRsAvrk----E~~-paV~VDVRg~ED---tLrsVVKALgV~nve~CGDlL--dFI~ea~ 461 (664)
T PTZ00494 392 PSHPRIVALAGGSGGGRCVPCRRAVRV----EGV-ALVHVDVGGTED---TLRSVVRALGVSNVEVCGDLL--GFVEEAM 461 (664)
T ss_pred CCCCcEEEEecCCCCCchHHHHHHHHH----cCC-CeEEEEecCCcc---hHHHHHHHhCCCChhhhccHH--HHHHHHH
Confidence 457899999999999999999998873 233 356888876543 344555555432110000000 0011122
Q ss_pred HHHHHHhCCceEEEEEe--CCCC-chhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCccchHHHH
Q 039728 85 TTLRGHLKDKNYMVVFD--DVWK-IDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLF 161 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD--~~~~-~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll 161 (263)
...+....++.-+||+- +=.+ ...+++....- ....-|+|++----+..........+..+|-+++||.++|.++.
T Consensus 462 ~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLa-cDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~Yt 540 (664)
T PTZ00494 462 RGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLV-SDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYA 540 (664)
T ss_pred HHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHH-ccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHH
Confidence 22222334555555543 2221 22344433332 22345677765444333322223344468999999999999988
Q ss_pred HHHh
Q 039728 162 CRKA 165 (263)
Q Consensus 162 ~~~~ 165 (263)
...+
T Consensus 541 qH~l 544 (664)
T PTZ00494 541 EHTL 544 (664)
T ss_pred hccc
Confidence 7665
No 201
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.89 E-value=0.0001 Score=57.79 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCC-----CC--------c
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQ-----PT--------P 72 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~--------~ 72 (263)
+...++.|.|++|+|||+++.+++.. ....-..++|++.... .......+ ..+.-.... .. .
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 56789999999999999999999763 2223446778887643 33333322 122100000 00 0
Q ss_pred cccccccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 039728 73 VEIHKMEEMELITTLRGHLKD-KNYMVVFDDVW 104 (263)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~-~~~LlvlD~~~ 104 (263)
..............+...+.. ++-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 000112234566666666643 55689999875
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.89 E-value=8.5e-06 Score=56.85 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 203
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.87 E-value=0.00011 Score=57.54 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccC----CceeEEEEeCCCCCH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH----FSSRAWVTVGKEYNK 52 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 52 (263)
....++.|+|++|+|||+++.+++........ ...++|++.......
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~ 67 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP 67 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH
Confidence 56788999999999999999999753222221 256889987765443
No 204
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.86 E-value=0.00034 Score=50.42 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
...+++|.|+.|+|||||++.+... .+ ...+.++++... .+.-.. . -.....+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~~~~-------------~i~~~~------~-lS~G~~~rv~- 80 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE--LE-PDEGIVTWGSTV-------------KIGYFE------Q-LSGGEKMRLA- 80 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC--CC-CCceEEEECCeE-------------EEEEEc------c-CCHHHHHHHH-
Confidence 3468899999999999999999873 22 234445543210 000000 0 0001112222
Q ss_pred HHHHhCCceEEEEEeCCC---CchhHHHHHHhccCCCCCcEEEEEeCchhhhhh
Q 039728 87 LRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKA 137 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~ 137 (263)
+...+-.++-++++|+.. +......+...+... +..+|++|........
T Consensus 81 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 81 LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 344455677788999865 333333444444332 2467888877655433
No 205
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00014 Score=56.90 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=68.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC-----CCCHHHHHHHHHHHHhhcc--CCCCcccccccc
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK-----EYNKNELLRTVIKEFHSFS--GQPTPVEIHKME 79 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~ 79 (263)
+..+++|.|.+|+||||+++.++. -.+ -..+.+++...+ .........+++..+.... ....|.+. +
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhel---S 111 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEE-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHEL---S 111 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcC-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCccc---C
Confidence 456789999999999999999997 333 334555555332 1112233444444443211 11112222 2
Q ss_pred HHHHHH-HHHHHhCCceEEEEEeCCCCch---hHHHHHHhccCC--CCCcEEEEEeCchhhhhhhcc
Q 039728 80 EMELIT-TLRGHLKDKNYMVVFDDVWKID---FWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKS 140 (263)
Q Consensus 80 ~~~~~~-~~~~~l~~~~~LlvlD~~~~~~---~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~ 140 (263)
..+..+ .+.+.+.-++-++|.|+..+.- .-.++...+... ..+...+..|.+-.+......
T Consensus 112 GGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 112 GGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred chhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 222222 2344556688899999876322 223333333322 235567777777766665544
No 206
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.84 E-value=0.00026 Score=56.46 Aligned_cols=117 Identities=15% Similarity=-0.022 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHh--hccC-CCCccccccccHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFH--SFSG-QPTPVEIHKMEEMELI 84 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~-~~~~~~~~~~~~~~~~ 84 (263)
...++|.|++|+|||||++.++.. .. ...+.+++.-..-... +.-.++..... .+.. ........+.. ...
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~--k~~ 184 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCP--KAE 184 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccch--HHH
Confidence 467899999999999999999983 33 2233444432221111 11122222211 1111 00000111111 111
Q ss_pred HHHHHHh-CCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhh
Q 039728 85 TTLRGHL-KDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNV 134 (263)
Q Consensus 85 ~~~~~~l-~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 134 (263)
. +...+ ...+-++++|++...+.+..+...+. .|..+|+||.....
T Consensus 185 ~-~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 185 G-MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred H-HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 1 22222 24778999999987666666655543 46779999987555
No 207
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.84 E-value=9.8e-05 Score=54.46 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC--CHHHHHHHHHHHHhhccCCCCccccccccHHH-H
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY--NKNELLRTVIKEFHSFSGQPTPVEIHKMEEME-L 83 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~ 83 (263)
...+++|.|+.|+|||||++.+... .. ...+.+++...... +..... ...+.. ....+..+ .
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~--~~-~~~G~v~~~g~~~~~~~~~~~~---~~~i~~---------~~qLS~G~~q 89 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL--YK-PDSGEILVDGKEVSFASPRDAR---RAGIAM---------VYQLSVGERQ 89 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEEECCEECCcCCHHHHH---hcCeEE---------EEecCHHHHH
Confidence 3457899999999999999999873 22 33455555432211 111110 000100 00012222 2
Q ss_pred HHHHHHHhCCceEEEEEeCCC---CchhHHHHHHhccCC-CCCcEEEEEeCchhhhhh
Q 039728 84 ITTLRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDN-KKCGRIIVTTRHMNVAKA 137 (263)
Q Consensus 84 ~~~~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~~~ 137 (263)
.-.+...+-..+-++++|+.. +......+...+... ..+..+|++|.+......
T Consensus 90 rl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 90 MVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 222334455677788899865 222233333333222 235678888888664433
No 208
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=0.00028 Score=52.45 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCC-ccc--ccc-ccHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPT-PVE--IHK-MEEME 82 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~--~~~-~~~~~ 82 (263)
...+++|.|+.|+|||||++.++.. .. ...+.+++......... .......+.-...... ... .++ .+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVDLRDLD--LESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEhhhcC--HHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 3468899999999999999999873 22 23344444321110000 0011111110000000 000 000 11111
Q ss_pred -HHHHHHHHhCCceEEEEEeCCC---CchhHHHHHHhccCCCCCcEEEEEeCchhhhh
Q 039728 83 -LITTLRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDNKKCGRIIVTTRHMNVAK 136 (263)
Q Consensus 83 -~~~~~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 136 (263)
..-.+...+-.++-+++||+-. +......+...+.....+..+|++|.+.....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 1122344455677899999865 23333344444333333467888888776554
No 209
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.84 E-value=3.1e-05 Score=62.91 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=52.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHH
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMEL 83 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 83 (263)
+-+..+++.|+|++|+|||||+.+++.. ....-..++|++.....+.. .+..+........ ..+..+.++.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~--v~~p~~~eq~ 121 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLL--VSQPDTGEQA 121 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeE--EecCCCHHHH
Confidence 3467789999999999999999998773 33333456788766544332 2232221110000 1111223444
Q ss_pred HHHHHHHhC-CceEEEEEeCCC
Q 039728 84 ITTLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 84 ~~~~~~~l~-~~~~LlvlD~~~ 104 (263)
...+....+ +..-++|+|.+.
T Consensus 122 l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 122 LEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHHHhhccCCcEEEEcchh
Confidence 444444443 345689999875
No 210
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.84 E-value=0.0001 Score=55.10 Aligned_cols=126 Identities=17% Similarity=0.079 Sum_probs=67.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeE--EEEeCCCCCHHHHHHHHHHHHh-hccCCCCcc-----ccccc
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRA--WVTVGKEYNKNELLRTVIKEFH-SFSGQPTPV-----EIHKM 78 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~-----~~~~~ 78 (263)
....|.|+|..|-||||.|...+.+ .....++..+ |+..........++..+- .+. ...+..... .....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR-AVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 4578999999999999999887764 2222333222 333332233333333321 111 011111000 00111
Q ss_pred cHHHHHHHHHHHhCCce-EEEEEeCCCC-----chhHHHHHHhccCCCCCcEEEEEeCchhh
Q 039728 79 EEMELITTLRGHLKDKN-YMVVFDDVWK-----IDFWGDVEHALLDNKKCGRIIVTTRHMNV 134 (263)
Q Consensus 79 ~~~~~~~~~~~~l~~~~-~LlvlD~~~~-----~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 134 (263)
.........++.+.+.+ =++|||++-. .-..+++...+...+.+..+|+|-|+...
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 12223344455554444 4999999852 22345666677777778899999998643
No 211
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.82 E-value=3.5e-05 Score=62.65 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
=+..+++.|+|++|+|||||+.+++.. ....-..++|++.....+.. .+..+........ ..+..+.++..
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~--v~~p~~~eq~l 122 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLL--ISQPDTGEQAL 122 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHhe--ecCCCCHHHHH
Confidence 356789999999999999999998873 23333457788876654432 2222221110000 01111234444
Q ss_pred HHHHHHhC-CceEEEEEeCCC
Q 039728 85 TTLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 85 ~~~~~~l~-~~~~LlvlD~~~ 104 (263)
..+....+ +..-++|+|.+.
T Consensus 123 ~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 123 EIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHhccCCCEEEEcchH
Confidence 44444443 345689999875
No 212
>PRK09354 recA recombinase A; Provisional
Probab=97.82 E-value=4.2e-05 Score=62.70 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
=+..+++.|+|++|+|||||+.+++.. ....-..++|++.....+.. .+..+.....+.. ..+..+.++..
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~ll--i~qp~~~Eq~l 127 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLL--VSQPDTGEQAL 127 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeE--EecCCCHHHHH
Confidence 356789999999999999999998874 33334567788877655532 2232221111000 01111234444
Q ss_pred HHHHHHhC-CceEEEEEeCCC
Q 039728 85 TTLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 85 ~~~~~~l~-~~~~LlvlD~~~ 104 (263)
..+...++ ...-++|+|.+.
T Consensus 128 ~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 128 EIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHhhcCCCCEEEEeChh
Confidence 44444443 345689999875
No 213
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00011 Score=66.01 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=58.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHH
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMEL 83 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 83 (263)
.+....+.+..||.|||||-||++++.. .-..-...+-++.+.... ..-+..+..... ...+...
T Consensus 517 p~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E-----kHsVSrLIGaPP-----GYVGyee--- 581 (786)
T COG0542 517 PNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME-----KHSVSRLIGAPP-----GYVGYEE--- 581 (786)
T ss_pred CCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH-----HHHHHHHhCCCC-----CCceecc---
Confidence 3445567788999999999999999883 332223444444443221 122233322211 1111111
Q ss_pred HHHHHHHhCCceE-EEEEeCCC--CchhHHHHHHhccCC
Q 039728 84 ITTLRGHLKDKNY-MVVFDDVW--KIDFWGDVEHALLDN 119 (263)
Q Consensus 84 ~~~~~~~l~~~~~-LlvlD~~~--~~~~~~~l~~~l~~~ 119 (263)
-..+.+..+++|+ +++||+++ +.+.++-++..+...
T Consensus 582 GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 582 GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2335556667876 89999998 566777777666554
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00027 Score=58.73 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
+.++++|.|++|+||||++..++... ...-..+.+++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecC
Confidence 45789999999999999999998742 2222234455544
No 215
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.81 E-value=5.4e-05 Score=55.99 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY 50 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (263)
+++|.|.+|+|||++|.++... ....++|+.-....
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~ 36 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAF 36 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcC
Confidence 3689999999999999999873 22346677655544
No 216
>PRK05973 replicative DNA helicase; Provisional
Probab=97.80 E-value=0.00017 Score=56.09 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=32.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
+=....+++|.|++|+|||+++.+++... ...-..++|++....
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes 103 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC
Confidence 34567789999999999999999987742 223345777776653
No 217
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.80 E-value=0.00023 Score=55.91 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=31.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
+...+++|.|++|+|||+++.+++.. .-..-..++|++...
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE 59 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC
Confidence 56789999999999999999998763 222344677888765
No 218
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.80 E-value=0.00014 Score=57.95 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
....++.|.|++|+|||+++.+++.+ ....-..++|++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC
Confidence 56788999999999999999998763 2222345778887643
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.78 E-value=0.00024 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999987
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00031 Score=58.40 Aligned_cols=58 Identities=29% Similarity=0.265 Sum_probs=35.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC-CCHHHHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE-YNKNELLRTVIKEF 63 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l 63 (263)
.+..++++.|++|+||||++..+............+.++..... ....+.+....+.+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~ 193 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKIL 193 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHc
Confidence 34679999999999999999999874222222234556664432 23334444444443
No 221
>PRK07261 topology modulation protein; Provisional
Probab=97.76 E-value=8.4e-05 Score=55.25 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.|+|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.76 E-value=0.00042 Score=51.67 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+|||||++.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 3456899999999999999999887
No 223
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00017 Score=61.36 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNND 32 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~ 32 (263)
.+=|+++||||.|||-||++++-..
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhccc
Confidence 4558899999999999999999843
No 224
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=0.0003 Score=52.41 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCC--Ccc--cccc--ccH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQP--TPV--EIHK--MEE 80 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~--~~~~--~~~ 80 (263)
...+++|.|+.|+|||||++.++.. .. ...+.++++........ ......+.--.... .+. ...+ .+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL--LK-PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 3458899999999999999999873 22 23344544322111100 11111111000000 000 0000 111
Q ss_pred HH-HHHHHHHHhCCceEEEEEeCCC---CchhHHHHHHhccCC-CCCcEEEEEeCchhhhhh
Q 039728 81 ME-LITTLRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDN-KKCGRIIVTTRHMNVAKA 137 (263)
Q Consensus 81 ~~-~~~~~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~~~ 137 (263)
.+ ..-.+...+-.++-++++|+.. +......+...+... ..+..+|++|.+......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22 2223444555678899999865 222233333333322 225678888887765543
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.75 E-value=7.8e-05 Score=68.88 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+.++||+|+|||+||+.+++
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4578899999999999999987
No 226
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00041 Score=52.36 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHhCCceEEEEEeCCCC------chhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccC
Q 039728 89 GHLKDKNYMVVFDDVWK------IDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSS 141 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~------~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~ 141 (263)
+.+.-+|=+|.+|+--+ ....+++...+ .....|+|.|.+.....+++..
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL---k~~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITEL---KKKYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHH---HhccEEEEEeCCHHHHHHHhHh
Confidence 34455677888998542 22344444444 3567899999998887777654
No 227
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=0.00076 Score=51.87 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..-.++|.||+|+|||||...+.-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999987754
No 228
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00013 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999999986
No 229
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00044 Score=61.36 Aligned_cols=153 Identities=13% Similarity=0.070 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+++.++|++|+||||+++.++. ....++ +=+++.+ +... ....+...+...
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas--~lg~h~---~evdc~e--------------l~~~--------s~~~~etkl~~~ 482 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVAS--ELGLHL---LEVDCYE--------------LVAE--------SASHTETKLQAI 482 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHH--HhCCce---EeccHHH--------------Hhhc--------ccchhHHHHHHH
Confidence 467899999999999999999998 333332 1112111 1000 000111122222
Q ss_pred HHHHhCCceEEEEEeCCCC----------ch---hHHHHHH-h-ccCCCCCcEEEEEeCch-hhhhhhccCCCccceecc
Q 039728 87 LRGHLKDKNYMVVFDDVWK----------ID---FWGDVEH-A-LLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELE 150 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~----------~~---~~~~l~~-~-l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~ 150 (263)
+.+.-.-.+.+|+|-|++- .. .++.++. . .....++.-++.|+.+. .+....... -.+.+.++
T Consensus 483 f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~-f~~ei~~~ 561 (953)
T KOG0736|consen 483 FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSL-FLHEIEVP 561 (953)
T ss_pred HHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHh-hhhhccCC
Confidence 2222233677777777651 11 1222222 1 11123333344455443 222222221 12689999
Q ss_pred CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 151 TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
.++++|-.++|+-...... -...-..+.++++|.|.-
T Consensus 562 ~lse~qRl~iLq~y~~~~~------~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 562 ALSEEQRLEILQWYLNHLP------LNQDVNLKQLARKTSGFS 598 (953)
T ss_pred CCCHHHHHHHHHHHHhccc------cchHHHHHHHHHhcCCCC
Confidence 9999999999998775431 112234455666666553
No 230
>PRK14974 cell division protein FtsY; Provisional
Probab=97.72 E-value=0.00041 Score=56.99 Aligned_cols=26 Identities=42% Similarity=0.524 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+..+++++|++|+||||++..++..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34689999999999999988888873
No 231
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.72 E-value=9.7e-05 Score=67.07 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccc---ccCC-ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGL---KTHF-SSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
.-++|+|++|+|||++|+.++..... ...+ ...+| ... .. .++. .. .. ....+..+
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~-~l~----~~----~lla---G~-------~~-~Ge~e~rl 267 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY-SLD----IG----SLLA---GT-------KY-RGDFEKRF 267 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE-ecc----HH----HHhc---cc-------ch-hhhHHHHH
Confidence 45578999999999999998863211 1111 11222 111 10 1110 00 00 00122222
Q ss_pred HHHHHHh-CCceEEEEEeCCCCc----------hhHHHHHHhccCCCCCcEEEEEeCchhhhhhhc----cCCCccceec
Q 039728 85 TTLRGHL-KDKNYMVVFDDVWKI----------DFWGDVEHALLDNKKCGRIIVTTRHMNVAKACK----SSSPVHIHEL 149 (263)
Q Consensus 85 ~~~~~~l-~~~~~LlvlD~~~~~----------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~----~~~~~~~~~l 149 (263)
+.+...+ ...+.+|++|+++.. .....+...+... ...++|-+|..++...... ...+++.+.+
T Consensus 268 ~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v 346 (758)
T PRK11034 268 KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDI 346 (758)
T ss_pred HHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhccHHHHhhCcEEEe
Confidence 2232222 245679999999731 1222233333322 2334555555443221111 1123468999
Q ss_pred cCCCccchHHHHHHH
Q 039728 150 ETLPPNEAWKLFCRK 164 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~ 164 (263)
+..+.++..++++..
T Consensus 347 ~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 347 TEPSIEETVQIINGL 361 (758)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999865
No 232
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.72 E-value=0.00014 Score=55.45 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++++|+|+.|+|||||++.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988864
No 233
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.72 E-value=0.00034 Score=54.65 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTV 59 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (263)
+...++.|.|++|+||||++.+++... .+.. ..++|++... +..+....+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 445699999999999999987776632 1222 3467777443 344444443
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.71 E-value=0.0001 Score=64.63 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..-++|+|++|+|||++|+.+.+
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999875
No 235
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.71 E-value=0.0001 Score=54.67 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+++|.|++|+|||++|..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999987
No 236
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.70 E-value=0.00028 Score=54.14 Aligned_cols=79 Identities=25% Similarity=0.314 Sum_probs=46.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
..-|.++|.-|+|||+|++++.+ ........ -|.+.... .. +...+...+
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~d--l~------------------------~Lp~l~~~L 134 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKED--LA------------------------TLPDLVELL 134 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHHH--Hh------------------------hHHHHHHHH
Confidence 44578999999999999999988 44444332 22222210 00 111222333
Q ss_pred HHHhCCceEEEEEeCCC---CchhHHHHHHhccC
Q 039728 88 RGHLKDKNYMVVFDDVW---KIDFWGDVEHALLD 118 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~ 118 (263)
+. ..++++++.||+. ....+..+...+..
T Consensus 135 r~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 135 RA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred hc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 22 4678999999986 34456666655543
No 237
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.70 E-value=2.7e-05 Score=57.76 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-cCCceeEEEEeCCCCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLK-THFSSRAWVTVGKEYN 51 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~ 51 (263)
...+.+.||+|+|||.+|+.+.+ ... ......+-+++.....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46789999999999999999998 344 3444555666655333
No 238
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=97.69 E-value=7.9e-05 Score=68.89 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc--cCCceeEEEEeCCCCCHH------HHHHHHHHHHhhccCCCCccccccccHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLK--THFSSRAWVTVGKEYNKN------ELLRTVIKEFHSFSGQPTPVEIHKMEEM 81 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 81 (263)
-+.|.|.+|+||||+...++-....+ ..-+..+++.+....... .+...+...+..... ..
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~-----------~~ 292 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI-----------AK 292 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC-----------cc
Confidence 57899999999999998876542111 222344455544211111 122222222221111 01
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCch------hHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCcc
Q 039728 82 ELITTLRGHLKDKNYMVVFDDVWKID------FWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPN 155 (263)
Q Consensus 82 ~~~~~~~~~l~~~~~LlvlD~~~~~~------~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~ 155 (263)
.........+...++++++|++|... ....+...+. .-+.+++|+|||....-.....- ..+++..+.++
T Consensus 293 ~~~~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f---~~~ei~~~~~~ 368 (824)
T COG5635 293 QLIEAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGF---AVFEIYKFLDL 368 (824)
T ss_pred hhhHHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhh---hhccchhhhHH
Confidence 12222255667889999999998422 2222222222 23467899999986554443332 45555555555
Q ss_pred chHHHHHHH-----hcCCCCCCCCCh------HHHHHHHHHHHhcCCChhHHHHHHHHhccCCC----CHHHHHHHHHHh
Q 039728 156 EAWKLFCRK-----ASGPSSGGCCPS------ELKELSQDILGKCEGLPLAIVAVGGLLSTKNR----VVSEWKKLFDRL 220 (263)
Q Consensus 156 e~~~ll~~~-----~~~~~~~~~~~~------~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~----~~~~~~~~~~~~ 220 (263)
....+.... .... ....... .+.-...+-.+.....|+.+.+.+........ ..+-|...++.+
T Consensus 369 ~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~ 447 (824)
T COG5635 369 QINQFILYQWLDAFIEDW-FGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDAL 447 (824)
T ss_pred HHHHHHHHHHHHHHHHhh-hcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHH
Confidence 444333311 1100 0001111 11112233444458889999999865542211 235555555544
No 239
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00031 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+..+-|.++||+|+|||.|+++++++
T Consensus 187 dpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45677899999999999999999993
No 240
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.69 E-value=5.9e-05 Score=58.52 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++++|+|+.|.||||+.+.+..
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 3567999999999999999988653
No 241
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.68 E-value=0.00054 Score=58.33 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+..++.++|++|+||||++..++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999999874
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.67 E-value=7.4e-05 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....|+|+|++|+||+++|+.+..
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHh
Confidence 345689999999999999998877
No 243
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.66 E-value=0.00085 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.||.|+|||||.+.+..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999877
No 244
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00097 Score=59.74 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+=+.|+||||+|||-||++++-.. ++-|+++.... + .++.. . .........+
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGSE----F-vE~~~---g------------~~asrvr~lf 396 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGSE----F-VEMFV---G------------VGASRVRDLF 396 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhccc-------CCceeeechHH----H-HHHhc---c------------cchHHHHHHH
Confidence 4557899999999999999999832 23456654321 1 11110 0 0011122222
Q ss_pred HHHhCCceEEEEEeCCCC-----------------chhHHHHHHhccCCCC--CcEEEEEeCchhhhhhhc--cCCCccc
Q 039728 88 RGHLKDKNYMVVFDDVWK-----------------IDFWGDVEHALLDNKK--CGRIIVTTRHMNVAKACK--SSSPVHI 146 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~-----------------~~~~~~l~~~l~~~~~--~~~iliTsR~~~~~~~~~--~~~~~~~ 146 (263)
...=...|+++.+|++|. ..-+++++........ +..++-+|+..+.+.... ...-+..
T Consensus 397 ~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~ 476 (774)
T KOG0731|consen 397 PLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQ 476 (774)
T ss_pred HHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccc
Confidence 222245688999998872 1124555554443322 223334555444332211 1111256
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhH
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLA 195 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~ 195 (263)
+.++.-+..+-.++|..++..... ..+..++.+ ++.++.|++=|
T Consensus 477 i~i~~p~~~~r~~i~~~h~~~~~~----~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 477 IQIDLPDVKGRASILKVHLRKKKL----DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred eeccCCchhhhHHHHHHHhhccCC----CcchhhHHH-HHhcCCCCcHH
Confidence 778888888999999998865521 233344555 88888888743
No 245
>PRK04328 hypothetical protein; Provisional
Probab=97.66 E-value=0.00019 Score=56.82 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
+...++.|.|++|+|||+|+.+++.. ....-..++|++...
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 46788999999999999999998773 222334577888765
No 246
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.65 E-value=4e-05 Score=59.79 Aligned_cols=94 Identities=27% Similarity=0.254 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccC-CceeEEEEeCCCCCHHHHHHHHHHHHhhcc----CC-C-----Cccc
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH-FSSRAWVTVGKEYNKNELLRTVIKEFHSFS----GQ-P-----TPVE 74 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~-~-----~~~~ 74 (263)
+...+++|.|++|+|||+++.+++.. .-.. -..++|++..... ..+...+ ..+.-.. .. . ....
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEecccc
Confidence 56788999999999999999998863 2223 4457888876532 2222221 1111000 00 0 0000
Q ss_pred cc---cccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 039728 75 IH---KMEEMELITTLRGHLKD-KNYMVVFDDVW 104 (263)
Q Consensus 75 ~~---~~~~~~~~~~~~~~l~~-~~~LlvlD~~~ 104 (263)
.. ..+...+...+.+.++. +.-.+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 00 23455666666666543 34689999864
No 247
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.65 E-value=3.4e-05 Score=61.66 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+-+.|+|++|+|||+++..+...
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCcEEEECCCCCchhHHHHhhhcc
Confidence 3567899999999999999998873
No 248
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00038 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.|.++|.||+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 57899999999999999999883
No 249
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.64 E-value=0.00055 Score=51.44 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999873
No 250
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.64 E-value=0.00096 Score=49.66 Aligned_cols=37 Identities=38% Similarity=0.420 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
++.+.|++|+||||++..++.. ....-..++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCC
Confidence 5789999999999999998873 322222344555443
No 251
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.64 E-value=0.00088 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++|+|+.|+||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 252
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.64 E-value=0.00072 Score=49.12 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
-.+.|+||+|+|||||.++++.
T Consensus 30 e~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh
Confidence 4578999999999999999998
No 253
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00013 Score=66.27 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+.++||+|+|||.+|+.++..
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999883
No 254
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00063 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..-+++|.|++|+|||||++.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 345789999999999999999876
No 255
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.61 E-value=0.00022 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+.++++|.|++|+|||+++..+..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCHHHHHHHHHH
Confidence 457899999999999999998877
No 256
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.61 E-value=0.0011 Score=56.72 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 3 NGRSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 3 ~~~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...-+.+++.|+||+|+||||.++.++.
T Consensus 105 ~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 105 TPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred ccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 3456778999999999999999999887
No 257
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.61 E-value=0.00021 Score=56.72 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCC-CHHHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEY-NKNELLRTVI 60 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~l~ 60 (263)
+-..++|.|.+|+|||+|+.+++++ ...+|. .+++.-++... ...++..++.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~ 121 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMK 121 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHH
Confidence 3445789999999999999999984 443444 34455565543 3444444443
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.61 E-value=0.00025 Score=53.89 Aligned_cols=57 Identities=30% Similarity=0.272 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC-CCCHHHHHHHHHHHHhhc
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK-EYNKNELLRTVIKEFHSF 66 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~ 66 (263)
++++++.|+.|+||||.+..++.....+ -..+..++... .....+.+...++.+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4689999999999999998887743333 33466777654 345566667777777543
No 259
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.61 E-value=0.0017 Score=47.95 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
...++.|.|++|.|||||..-++- ....-.+.+|++
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAG---F~~P~~G~i~i~ 59 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAG---FETPASGEILIN 59 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHh---ccCCCCceEEEc
Confidence 456899999999999999987764 222223455655
No 260
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00061 Score=53.14 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+-|.++||+|.|||-+|+++++
T Consensus 209 dppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhc
Confidence 3456688999999999999999999
No 261
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00096 Score=55.20 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..|-|..+||||.|||..|+.+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr 406 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELAR 406 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHh
Confidence 467789999999999999999998
No 262
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.60 E-value=0.00051 Score=62.82 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+.++++|+||.|.||||+.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 457899999999999999998865
No 263
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.60 E-value=0.00028 Score=58.08 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=38.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCHHHHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNKNELLRTVIKEF 63 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l 63 (263)
....++-|+|++|+|||+|+.+++-...... .-..++|++......+..+.. ++..+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERF 184 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHc
Confidence 5667888999999999999999865322221 123678999887766665433 34443
No 264
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.59 E-value=0.00036 Score=54.49 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....+++|.|++|+|||+++.+++... .+ .-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccC
Confidence 567889999999999999999877531 12 234677888754
No 265
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.00037 Score=51.00 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCcccccccc-HHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME-EMELITT 86 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 86 (263)
..+++|.|+.|+|||||++.+... .. ...+.+++......... .......+.-... .+ .+...-.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q---------lS~G~~~r~~ 90 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDIAKLP--LEELRRRIGYVPQ---------LSGGQRQRVA 90 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEcccCC--HHHHHhceEEEee---------CCHHHHHHHH
Confidence 368899999999999999999873 32 23445554432211100 0011111110000 11 1122222
Q ss_pred HHHHhCCceEEEEEeCCC---CchhHHHHHHhccCC-CCCcEEEEEeCchhhhhhh
Q 039728 87 LRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDN-KKCGRIIVTTRHMNVAKAC 138 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~~~~ 138 (263)
+...+...+-++++|+.. +......+...+... ..+..++++|........+
T Consensus 91 l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 91 LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 444455567789999876 223333333333322 1245688888876665543
No 266
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.59 E-value=0.00012 Score=52.47 Aligned_cols=40 Identities=33% Similarity=0.406 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHH
Q 039728 11 VAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNEL 55 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (263)
|+|+|++|+|||+||+.++.. .. .....+.+....+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccc
Confidence 789999999999999999983 31 12334566666665544
No 267
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.58 E-value=0.00027 Score=58.75 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=47.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+=+-|+|+.|+|||.|.-.+++....+.. .......++.++-+.+....+. ...+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~-----------~~~l~ 118 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQ-----------DDPLP 118 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCC-----------CccHH
Confidence 45677899999999999999999995433211 1112334555555544332211 11233
Q ss_pred HHHHHhCCceEEEEEeCCC
Q 039728 86 TLRGHLKDKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~ 104 (263)
.+.+.+.++..||+||+++
T Consensus 119 ~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 119 QVADELAKESRLLCFDEFQ 137 (362)
T ss_pred HHHHHHHhcCCEEEEeeee
Confidence 3445555677799999976
No 268
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00059 Score=54.37 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLR 57 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (263)
+..+++=|+|+.|+||||++.+++-. .+..-..++|++.....++..+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH
Confidence 56788999999999999999998874 333344688999888777655433
No 269
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.57 E-value=0.0014 Score=52.67 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIK 61 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 61 (263)
....+++|.|++|+|||+++.+++.... ...-..++|++.... .......+..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHH
Confidence 4456889999999999999999887422 222346778887653 3344444433
No 270
>PRK13695 putative NTPase; Provisional
Probab=97.57 E-value=0.00017 Score=53.76 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++|+|++|+|||||+..++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 271
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00053 Score=55.81 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHF 38 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~ 38 (263)
..+-|.++||+|+|||.+|+++.. .....|
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ak--eaga~f 155 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAK--EAGANF 155 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHH--HcCCCc
Confidence 456789999999999999999998 444443
No 272
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.57 E-value=8.1e-05 Score=53.91 Aligned_cols=36 Identities=31% Similarity=0.236 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
..+|+|+|.+|+||||||.++.. +.......+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 4444444566665
No 273
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.56 E-value=0.00083 Score=61.59 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++++|+||.+.||||+.+.+.-
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHH
Confidence 4567899999999999999988754
No 274
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.55 E-value=0.0011 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999998773
No 275
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.55 E-value=6.4e-05 Score=54.04 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+|+++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 276
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.55 E-value=8.2e-05 Score=56.09 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+++|+|+.|.||||+++.+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999873
No 277
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.55 E-value=0.0014 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999873
No 278
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0023 Score=51.38 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=38.5
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCC
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETL 152 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~l 152 (263)
+..-++|+|+++ +.+..+.+++.+...++++.+|++|.+ ..+.+...+. ...+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR--cq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR--SLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc--ceEEEccch
Confidence 344588899998 456778888888888778877666666 4444443333 256666654
No 279
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.53 E-value=0.002 Score=50.06 Aligned_cols=24 Identities=42% Similarity=0.655 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998875
No 280
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.52 E-value=0.0031 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.-|+|.|++|+|||++|+.+...
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHH
Confidence 45789999999999999999873
No 281
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.52 E-value=0.00011 Score=55.01 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=29.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
.+..+|++.|++|+||||+++.++. .....+...++++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 4566899999999999999999988 4444455555553
No 282
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.52 E-value=0.00035 Score=55.43 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCHHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNKNELLRTVIK 61 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~ 61 (263)
....+.=|+|++|+|||.|+.+++-...... .-..++|++-....+...+. +++.
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~ 94 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAE 94 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHH
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhh
Confidence 4456788999999999999998865323322 22357799877777655543 4444
No 283
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.52 E-value=0.0006 Score=54.98 Aligned_cols=42 Identities=33% Similarity=0.345 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
+.++++++|++|+||||++..++...........+.+++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 567999999999999999999887432221213455666554
No 284
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.51 E-value=0.0007 Score=56.20 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
...++|.|++|+||||++..++. .........++ .+.++.... ... ...+..+. + .+.........+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~-tiEdp~E~~--~~~-~~~~i~q~------e-vg~~~~~~~~~l 188 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHII-TIEDPIEYV--HRN-KRSLINQR------E-VGLDTLSFANAL 188 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEE-EEcCChhhh--ccC-ccceEEcc------c-cCCCCcCHHHHH
Confidence 56899999999999999999887 33333333333 222221110 000 00000000 0 011112345556
Q ss_pred HHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhh
Q 039728 88 RGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVA 135 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 135 (263)
+..++..+=+|++|++.+.+........ ...|..++.|.......
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 6777788889999999876655443332 22344566666654443
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0011 Score=55.59 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc--cCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLK--THFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~--~~~~~~~~~~~~~ 48 (263)
+.++++++|+.|+||||.+..++...... ..-..+..++...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 46799999999999999998887642221 1222345555554
No 286
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.51 E-value=6.2e-05 Score=52.93 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999983
No 287
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.51 E-value=0.0018 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
-..+.|.||+|+|||||++.++-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 34689999999999999999865
No 288
>PRK15453 phosphoribulokinase; Provisional
Probab=97.50 E-value=0.00078 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++|+|.|.+|+||||++..+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999886
No 289
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.50 E-value=0.00057 Score=55.77 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc----cCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLK----THFSSRAWVTVGKEYNKNELLRTVIKEF 63 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l 63 (263)
...+++-|+|++|+|||+|+.+++-..... ..-..++|++.....++..+. +++..+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~ 154 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERF 154 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHc
Confidence 456788999999999999999877432222 112367899987766655543 334443
No 290
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.50 E-value=0.00078 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++.+|+|..|+|||||+..+.-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 467899999999999999988755
No 291
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.50 E-value=0.00012 Score=56.25 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.8
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 2 VNGRSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 2 ~~~~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.....++++|+|++|+|||||+..+..
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 45677889999999999999999999876
No 292
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.50 E-value=0.0035 Score=48.38 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998763
No 293
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=7.8e-05 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--++|+|+||+||||++..+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999874
No 294
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00066 Score=59.25 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=84.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+-+.++||+|+|||.+++++++. ...+ .+.++.. +++..+. +.+...+.+
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e--~~a~---~~~i~~p----------eli~k~~------------gEte~~LR~ 268 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANE--YGAF---LFLINGP----------ELISKFP------------GETESNLRK 268 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHH--hCce---eEecccH----------HHHHhcc------------cchHHHHHH
Confidence 44567889999999999999999983 3211 1111111 1122111 112334555
Q ss_pred HHHHHhCCc-eEEEEEeCCCCch------------hHHHHHHhccCCCCCc--EEEEEeCchhhhhhhcc-CCCccceec
Q 039728 86 TLRGHLKDK-NYMVVFDDVWKID------------FWGDVEHALLDNKKCG--RIIVTTRHMNVAKACKS-SSPVHIHEL 149 (263)
Q Consensus 86 ~~~~~l~~~-~~LlvlD~~~~~~------------~~~~l~~~l~~~~~~~--~iliTsR~~~~~~~~~~-~~~~~~~~l 149 (263)
.+......+ |-++.+|+++... ...+++..+....+.. .+|-+|+.......... ..-++.+.+
T Consensus 269 ~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~I 348 (693)
T KOG0730|consen 269 AFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEI 348 (693)
T ss_pred HHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeee
Confidence 566666666 8889999887311 2334444444333223 33345555433322111 012256777
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
.-.+..+-.++++....... .. .......++..+.|.-
T Consensus 349 giP~~~~RldIl~~l~k~~~--~~----~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 349 GIPGSDGRLDILRVLTKKMN--LL----SDVDLEDIAVSTHGYV 386 (693)
T ss_pred cCCCchhHHHHHHHHHHhcC--Cc----chhhHHHHHHHccchh
Confidence 77777777777777665431 11 2345566777777665
No 295
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.48 E-value=0.003 Score=48.40 Aligned_cols=25 Identities=40% Similarity=0.500 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998773
No 296
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.48 E-value=0.0028 Score=48.24 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 039728 10 VVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~ 29 (263)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999875
No 297
>PTZ00035 Rad51 protein; Provisional
Probab=97.47 E-value=0.00084 Score=55.43 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc----cCCceeEEEEeCCCCCHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLK----THFSSRAWVTVGKEYNKNE 54 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 54 (263)
....++.|+|++|+|||+|+.+++-..+.. ..-..++|++.........
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er 168 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER 168 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH
Confidence 557888999999999999999987532221 1122466888766545444
No 298
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.46 E-value=0.0019 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999998763
No 299
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.46 E-value=0.00024 Score=56.67 Aligned_cols=92 Identities=20% Similarity=0.125 Sum_probs=41.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
+.|+|+|.||+||||+|.++... ....-..+.+++... +. +.... .............+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~--~~~~~~~v~~i~~~~-------~~-----~~~~~--y~~~~~Ek~~R~~l~s~v~ 65 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY--LEEKGKEVVIISDDS-------LG-----IDRND--YADSKKEKEARGSLKSAVE 65 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH--HHHTT--EEEE-THH-------HH------TTSS--S--GGGHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH--HHhcCCEEEEEcccc-------cc-----cchhh--hhchhhhHHHHHHHHHHHH
Confidence 57999999999999999999883 333222233443110 00 10000 0000111112233444444
Q ss_pred HHhCCceEEEEEeCCCCchhHHHHHHhcc
Q 039728 89 GHLKDKNYMVVFDDVWKIDFWGDVEHALL 117 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~~~~~~l~~~l~ 117 (263)
+.+. +..++|+||.--...+..-+..+.
T Consensus 66 r~ls-~~~iVI~Dd~nYiKg~RYelyclA 93 (270)
T PF08433_consen 66 RALS-KDTIVILDDNNYIKGMRYELYCLA 93 (270)
T ss_dssp HHHT-T-SEEEE-S---SHHHHHHHHHHH
T ss_pred Hhhc-cCeEEEEeCCchHHHHHHHHHHHH
Confidence 4554 457889999876666655444443
No 300
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.0012 Score=49.99 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346889999999999999999986
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0021 Score=53.42 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC-CHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY-NKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
.+.++++++|+.|+||||++..++.. ....-..+.+++....- .....+...+..+... .....+...+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp-------v~~~~dp~dL~ 274 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE-------LIVATSPAELE 274 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC-------EEecCCHHHHH
Confidence 45789999999999999999998873 22222345566665432 2333344434433211 11112333444
Q ss_pred HHHHHHhC-CceEEEEEeCCC
Q 039728 85 TTLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 85 ~~~~~~l~-~~~~LlvlD~~~ 104 (263)
..+...-. +..=++++|-.-
T Consensus 275 ~al~~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCC
Confidence 43432221 233577888765
No 302
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.0023 Score=48.95 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|+|+.|.||||+.+.+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988754
No 303
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.45 E-value=0.0017 Score=51.99 Aligned_cols=40 Identities=38% Similarity=0.431 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
.+.++++++|++|+||||++..++.. ....-..+..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC
Confidence 45689999999999999999998873 33332345555544
No 304
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.44 E-value=0.0021 Score=56.77 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...++|+|++|+|||||++-+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999876
No 305
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.44 E-value=0.0012 Score=51.97 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
-....+++|.|++|+|||+++.+++.+.... .-..++|++...
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~ 52 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM 52 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC
Confidence 3456789999999999999999987742222 133577887665
No 306
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.44 E-value=0.0006 Score=55.79 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNKNE 54 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 54 (263)
....++.|+|++|+|||+|+.+++....... .-..++|++.....+...
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 5678899999999999999999875322211 112468988777655543
No 307
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.0018 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++.|.||.|.|||||++.++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999977
No 308
>PF13245 AAA_19: Part of AAA domain
Probab=97.44 E-value=0.00013 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=18.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+.++++|.|+||+|||+++.+.+.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHH
Confidence 467788899999999966655544
No 309
>PRK06762 hypothetical protein; Provisional
Probab=97.44 E-value=0.00011 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++|+|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999883
No 310
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.43 E-value=0.0024 Score=62.60 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+-|+++||+|+|||.||++++.+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh
Confidence 34667899999999999999999984
No 311
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.43 E-value=9.4e-05 Score=45.97 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+++|.|++|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 312
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.43 E-value=0.00016 Score=55.95 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 039728 9 SVVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~ 29 (263)
++++|+|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999975
No 313
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00055 Score=54.51 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHF 38 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~ 38 (263)
....++|||++|.|||-+|+.++. +..-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 456789999999999999999998 444343
No 314
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.43 E-value=0.0034 Score=48.18 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999875
No 315
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0038 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.-++.|.|+.|+|||||.+.++-
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHc
Confidence 34788999999999999999987
No 316
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.43 E-value=0.0022 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~ 29 (263)
.++++|+|+.|+|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999987
No 317
>PRK08233 hypothetical protein; Provisional
Probab=97.43 E-value=0.00012 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+|+|.|++|+||||+|..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999984
No 318
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.42 E-value=0.00015 Score=54.56 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
+.|+++|.||+|+|||||+.+++. .....|..++..+-+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 357899999999999999999998 566667655555533
No 319
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0017 Score=54.73 Aligned_cols=24 Identities=50% Similarity=0.552 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..++++.|++|+||||++.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 320
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.41 E-value=0.0012 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456889999999999999999987
No 321
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00086 Score=55.53 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
...+++|-|.||+|||||+.+++. +..... .++|++-.+... -..--+.++...... -.-....+.+.+...
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~--l~l~aEt~~e~I~~~ 163 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQ---QIKLRADRLGLPTNN--LYLLAETNLEDIIAE 163 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHH---HHHHHHHHhCCCccc--eEEehhcCHHHHHHH
Confidence 456889999999999999999998 444344 678888665322 122223444322110 001222334444444
Q ss_pred HHHHhCCceEEEEEeCCC
Q 039728 87 LRGHLKDKNYMVVFDDVW 104 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~ 104 (263)
+. ..++-++|+|-+.
T Consensus 164 l~---~~~p~lvVIDSIQ 178 (456)
T COG1066 164 LE---QEKPDLVVIDSIQ 178 (456)
T ss_pred HH---hcCCCEEEEeccc
Confidence 43 3578899999986
No 322
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.41 E-value=0.0094 Score=52.75 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
...|+|+|++|+|||++|+.+.+. ....-...+.+++..
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~--s~r~~~pfv~i~c~~ 257 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYL--SPRAKRPFVKVNCAA 257 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeecCC
Confidence 446789999999999999999873 222222234455554
No 323
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.0026 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998763
No 324
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.40 E-value=9.7e-05 Score=50.33 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
|.|+|++|+|||+++..++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998773
No 325
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00039 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++.+|+|.|.+|+||||+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 56689999999999999999999983
No 326
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.40 E-value=0.00012 Score=55.62 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+|.|++|+||||+|..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 327
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0011 Score=60.63 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCC----------c--c
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPT----------P--V 73 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----------~--~ 73 (263)
.+..+++|.|+.|+||||-+-+++.+.-. ...+.+-+.-.......+.-..++..+....+... . -
T Consensus 63 ~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~T 140 (845)
T COG1643 63 EQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRT 140 (845)
T ss_pred HhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCc
Confidence 35789999999999999999998874222 22233433333334455566666666655432111 0 0
Q ss_pred ccccccHHHHHHHHHH-HhCCceEEEEEeCCCCchh-----HHHHHHhccCCCCCcEEEEEeCchh
Q 039728 74 EIHKMEEMELITTLRG-HLKDKNYMVVFDDVWKIDF-----WGDVEHALLDNKKCGRIIVTTRHMN 133 (263)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~l~~~~~LlvlD~~~~~~~-----~~~l~~~l~~~~~~~~iliTsR~~~ 133 (263)
...-.+...+++.++. .+-.+=-.+|+|++++..- +.-+...+...++..||||+|=+-+
T Consensus 141 rik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 141 RIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 1233455566666652 2222334789999985332 2223333444455689999987643
No 328
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.40 E-value=0.0015 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+++|+|+.|+||||+++.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999873
No 329
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.0026 Score=49.01 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+++|.|+.|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 889999999999999999886
No 330
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.39 E-value=0.0016 Score=50.57 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45889999999999999999876
No 331
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.39 E-value=0.0026 Score=49.66 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998763
No 332
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.39 E-value=0.0029 Score=49.96 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 333
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.39 E-value=0.0038 Score=48.53 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998873
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=97.38 E-value=0.0021 Score=54.70 Aligned_cols=25 Identities=48% Similarity=0.694 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++.++|++|+||||++..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998877776
No 335
>PRK07667 uridine kinase; Provisional
Probab=97.38 E-value=0.00019 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++..+|+|.|++|+||||++..+...
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455689999999999999999999883
No 336
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.0014 Score=55.85 Aligned_cols=41 Identities=37% Similarity=0.360 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
.+++++.|++|+||||++..++...........+.+++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 46899999999999999988876322112223456666544
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.37 E-value=0.0015 Score=51.34 Aligned_cols=21 Identities=43% Similarity=0.458 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+.+|.|++|+|||+|+.+++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 568899999999999999876
No 338
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.37 E-value=0.0027 Score=53.84 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....+|.++|++|+||||++..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999988763
No 339
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.37 E-value=0.00018 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+..+|+|.|++|+|||||+..+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999884
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.36 E-value=0.00014 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++++++|++|+||||+|+.+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 341
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.36 E-value=0.0019 Score=49.28 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998873
No 342
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.36 E-value=0.004 Score=48.45 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999998763
No 343
>PRK06547 hypothetical protein; Provisional
Probab=97.35 E-value=0.00018 Score=53.45 Aligned_cols=27 Identities=41% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....+|+|.|++|+||||++..+.+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999999873
No 344
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.35 E-value=0.00017 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|.|++|+||||+++.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.34 E-value=0.0032 Score=53.60 Aligned_cols=25 Identities=44% Similarity=0.601 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+..++.+.|++|+||||++..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998888763
No 346
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00075 Score=50.35 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.|.|.|+||+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 347
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.34 E-value=0.0002 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+...+|+|.|++|+|||||++.++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 35668999999999999999999987
No 348
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.00018 Score=54.30 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
+++|.|++|+|||+++.+++.. ....-..++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC
Confidence 3689999999999999998774 222334577887654
No 349
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.34 E-value=0.0006 Score=51.66 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccc--------CCceeEEEEeCCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKT--------HFSSRAWVTVGKE 49 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~--------~~~~~~~~~~~~~ 49 (263)
..++.|.|++|+|||+++.+++....... .-..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 45789999999999999998877432211 2235778887664
No 350
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.34 E-value=0.0011 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNND 32 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~ 32 (263)
+++++|++|+||||++..+....
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998743
No 351
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.34 E-value=0.0068 Score=55.29 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....|.|+|++|+|||++|+.+... ........+.+++..
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~--s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNL--SGRNNRRMVKMNCAA 437 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHh--cCCCCCCeEEEeccc
Confidence 3457899999999999999999873 222222344556654
No 352
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.33 E-value=0.0052 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999998774
No 353
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0019 Score=56.59 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=68.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+=|.+.||||+|||.||+++.....+. |++.+... +.++. .+.........+
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA~VP-------Ff~iSGS~-----FVemf---------------VGvGAsRVRdLF 235 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGSD-----FVEMF---------------VGVGASRVRDLF 235 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhcccCCC-------ceeccchh-----hhhhh---------------cCCCcHHHHHHH
Confidence 4567899999999999999999843332 22222110 00100 011111233444
Q ss_pred HHHhCCceEEEEEeCCCC------------c----hhHHHHHHhccCCCCCc-EEEE--EeCchhhhhh-hccCCCccce
Q 039728 88 RGHLKDKNYMVVFDDVWK------------I----DFWGDVEHALLDNKKCG-RIIV--TTRHMNVAKA-CKSSSPVHIH 147 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~------------~----~~~~~l~~~l~~~~~~~-~ili--TsR~~~~~~~-~~~~~~~~~~ 147 (263)
.+..++-|+++++|.+|. . +-+++++........+. .|++ |.|....-+. .+...-+..+
T Consensus 236 ~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI 315 (596)
T COG0465 236 EQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315 (596)
T ss_pred HHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence 444456689999999872 1 13445554444333222 2333 3444322122 1111122456
Q ss_pred eccCCCccchHHHHHHHhcCC
Q 039728 148 ELETLPPNEAWKLFCRKASGP 168 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~~~~ 168 (263)
.++.-+...-.++++-+....
T Consensus 316 ~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 316 LVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred ecCCcchhhHHHHHHHHhhcC
Confidence 666666666667777555443
No 354
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.0022 Score=49.65 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|+|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999988765
No 355
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.32 E-value=0.0032 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999999873
No 356
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0044 Score=52.53 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..++++.|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 357
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.036 Score=43.76 Aligned_cols=57 Identities=12% Similarity=-0.020 Sum_probs=38.3
Q ss_pred ceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCC
Q 039728 94 KNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETL 152 (263)
Q Consensus 94 ~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~l 152 (263)
+.-++|+++++ +....+.++..+...+++..+|++|.+ ..+.+...++. +.+.+.+.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRC--q~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRC--VQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhe--eeeecCCh
Confidence 34577899998 456788899999888888877766665 44555444432 45555554
No 358
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.31 E-value=0.00027 Score=56.40 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=35.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
+..++++|+|++|+|||+++.+++. ........++|++....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 6788999999999999999999998 44555667889988764
No 359
>PTZ00301 uridine kinase; Provisional
Probab=97.31 E-value=0.00019 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|.|++|+||||||..+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 357899999999999999988876
No 360
>PRK06696 uridine kinase; Validated
Probab=97.31 E-value=0.0002 Score=55.75 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++..+|+|.|++|+||||+|..+...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999999983
No 361
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.30 E-value=0.00059 Score=61.77 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
-+..+++.|+|++|+|||||+.+++.. ....-..++|++.....+. ..+..+........ .....+.++..
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~ll--v~~~~~~E~~l 127 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLL--VSQPDTGEQAL 127 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeE--EecCCCHHHHH
Confidence 356789999999999999999987763 2223345778887665542 23444432211110 11222334455
Q ss_pred HHHHHHhC-CceEEEEEeCCC
Q 039728 85 TTLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 85 ~~~~~~l~-~~~~LlvlD~~~ 104 (263)
..+...+. +..-++|+|.+.
T Consensus 128 ~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 128 EIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHHhhcCCCeEEEEcchh
Confidence 55555444 356689999875
No 362
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.30 E-value=9.5e-05 Score=51.28 Aligned_cols=27 Identities=48% Similarity=0.612 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCcccccCCc
Q 039728 11 VAVVGVGGLGKTTLAGKLFNNDGLKTHFS 39 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~~~~~~~~~ 39 (263)
|.|.|.+|+|||++|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 68999999999999999998 5555554
No 363
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.30 E-value=0.0081 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998763
No 364
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.30 E-value=0.00099 Score=55.70 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
....++.|.|++|+|||||+.+++.. .......++|++.... ... +..-+..+....... ......+.+.+.+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~q-i~~Ra~rlg~~~~~l--~l~~e~~le~I~~ 152 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQ-IKLRADRLGISTENL--YLLAETNLEDILA 152 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHH-HHHHHHHcCCCcccE--EEEccCcHHHHHH
Confidence 44678999999999999999999873 3333345778876542 222 222223332111100 0111223334444
Q ss_pred HHHHHhCCceEEEEEeCCC
Q 039728 86 TLRGHLKDKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~ 104 (263)
.+. ..++-++|+|.+.
T Consensus 153 ~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 153 SIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred HHH---hcCCcEEEEcchH
Confidence 332 2356789999975
No 365
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.30 E-value=0.00019 Score=59.04 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.+.++++|+||+|+||||||..++..
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999884
No 366
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0075 Score=46.83 Aligned_cols=132 Identities=12% Similarity=0.162 Sum_probs=69.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
.+.+-+.++||+|.|||-||++++++ ..+.|+.++.. ++.+...... ....+
T Consensus 179 aQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs--------elvqk~igeg-------------srmvr 230 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS--------ELVQKYIGEG-------------SRMVR 230 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH--------HHHHHHhhhh-------------HHHHH
Confidence 45667899999999999999999983 12334444431 2222221110 01111
Q ss_pred -HHHHHhCCceEEEEEeCCCCch------------hH----HHHHHhccCC--CCCcEEEEEeCchhhhhhh--ccCCCc
Q 039728 86 -TLRGHLKDKNYMVVFDDVWKID------------FW----GDVEHALLDN--KKCGRIIVTTRHMNVAKAC--KSSSPV 144 (263)
Q Consensus 86 -~~~~~l~~~~~LlvlD~~~~~~------------~~----~~l~~~l~~~--~~~~~iliTsR~~~~~~~~--~~~~~~ 144 (263)
.+.-.-..-+-+|+.|++|+.. +. -+++..+... ..+-++|..|..-+++... .....+
T Consensus 231 elfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgrid 310 (404)
T KOG0728|consen 231 ELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRID 310 (404)
T ss_pred HHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCccc
Confidence 1111113456788899987411 11 1222223222 3455788777655443221 122223
Q ss_pred cceeccCCCccchHHHHHHHh
Q 039728 145 HIHELETLPPNEAWKLFCRKA 165 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~ 165 (263)
.-++.++-+.+.-.++++-+.
T Consensus 311 rkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 311 RKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccCCCCCHHHHHHHHHHhh
Confidence 567777777777777776554
No 367
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.0041 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999873
No 368
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.29 E-value=0.00034 Score=53.74 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC-CCHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE-YNKNELLRTV 59 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 59 (263)
..++|.|++|+|||+|+.++.++ . .-+.++|+-++.. .+..++..++
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~--~--~~d~~V~~~iGer~~Ev~~~~~~~ 63 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANN--Q--DADVVVYALIGERGREVTEFIEEL 63 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--C--TTTEEEEEEESECHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhc--c--cccceeeeeccccchhHHHHHHHH
Confidence 45788999999999999999984 2 2334577777764 3344444444
No 369
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.01 Score=46.27 Aligned_cols=25 Identities=44% Similarity=0.524 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999863
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.29 E-value=0.0012 Score=57.56 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=36.0
Q ss_pred HhCCceEEEEEeCCC---CchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccC
Q 039728 90 HLKDKNYMVVFDDVW---KIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELET 151 (263)
Q Consensus 90 ~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ 151 (263)
.+-.++-+||||+-. +.+..+.+...+.... | .+|++|.+......... +.+.+.+
T Consensus 453 ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-G-tvl~VSHDr~Fl~~va~----~i~~~~~ 511 (530)
T COG0488 453 LLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-G-TVLLVSHDRYFLDRVAT----RIWLVED 511 (530)
T ss_pred HhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhcc----eEEEEcC
Confidence 335678899999865 3445555555555443 3 48888888877766553 4555554
No 371
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0048 Score=49.17 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998773
No 372
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.28 E-value=0.0082 Score=47.15 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999873
No 373
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.28 E-value=0.0013 Score=53.48 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
+..+++-|+|++|+|||||+.+++.. .+..-..++|++.....+.. .+..+.....+.. .......++.+.
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rll--v~~P~~~E~al~ 121 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLL--VVQPDTGEQALW 121 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEE--EEE-SSHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceE--EecCCcHHHHHH
Confidence 56789999999999999999999873 33344567799887655432 2222322211110 011122334444
Q ss_pred HHHHHhCC-ceEEEEEeCCC
Q 039728 86 TLRGHLKD-KNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~~-~~~LlvlD~~~ 104 (263)
.....++. ..-++|+|.+.
T Consensus 122 ~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CT
T ss_pred HHHHHhhcccccEEEEecCc
Confidence 44444443 33488999875
No 374
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.28 E-value=0.0047 Score=47.88 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998763
No 375
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.27 E-value=0.0043 Score=49.75 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++-.
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 38 GETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998763
No 376
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.27 E-value=0.0018 Score=61.76 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCc------------cc
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTP------------VE 74 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------~~ 74 (263)
+.++++|+|+.|+||||.+-+++.. ......+.+.+.-.......++-..++..+....+.... ..
T Consensus 88 ~~~VviI~GeTGSGKTTqlPq~lle--~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~s~~t~ 165 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQLPKICLE--LGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTM 165 (1294)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH--cCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccccCCCCC
Confidence 4678999999999999998877763 221212223222222222334444444444332111100 01
Q ss_pred cccccHHHHHHHHHHHh-CCceEEEEEeCCCCc----hhHHHHHHhccCCCCCcEEEEEeCch
Q 039728 75 IHKMEEMELITTLRGHL-KDKNYMVVFDDVWKI----DFWGDVEHALLDNKKCGRIIVTTRHM 132 (263)
Q Consensus 75 ~~~~~~~~~~~~~~~~l-~~~~~LlvlD~~~~~----~~~~~l~~~l~~~~~~~~iliTsR~~ 132 (263)
..-.+...++..+.... -.+--.||+|++|.. +.+-.+...+....+..++|++|=..
T Consensus 166 I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATi 228 (1294)
T PRK11131 166 VKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATI 228 (1294)
T ss_pred EEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCC
Confidence 11234555555554211 011237899999841 11112222233333456788877554
No 377
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0045 Score=56.05 Aligned_cols=24 Identities=46% Similarity=0.609 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++++++|+.|+||||++..++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 579999999999999999998874
No 378
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.0063 Score=47.63 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999874
No 379
>PHA00729 NTP-binding motif containing protein
Probab=97.26 E-value=0.00025 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+...++|+|++|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999883
No 380
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.25 E-value=0.00022 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+...|+|+|++|+||||++..+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999983
No 381
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.25 E-value=0.00084 Score=53.55 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
...+++|.|+.|+||||++..+... .......++.+ .++.... +.. ..++ .............
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~--i~~~~~~iiti--Edp~E~~--~~~-~~q~----------~v~~~~~~~~~~~ 141 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITV--EDPVEYQ--IPG-INQV----------QVNEKAGLTFARG 141 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEE--CCCceec--CCC-ceEE----------EeCCcCCcCHHHH
Confidence 4568999999999999999988773 33222223332 2221110 000 0000 0000001134455
Q ss_pred HHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhh
Q 039728 87 LRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNV 134 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 134 (263)
++..++..+=.++++++.+.+....+..... .|..++-|......
T Consensus 142 l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~ 186 (264)
T cd01129 142 LRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTNDA 186 (264)
T ss_pred HHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCCH
Confidence 6667777888999999988775544443322 23335545454433
No 382
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0012 Score=57.05 Aligned_cols=41 Identities=34% Similarity=0.323 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
...+++|+|++|+||||++..++...........+.+++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 46789999999999999998887632222112234455543
No 383
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.25 E-value=0.0015 Score=56.05 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
....++.|.|++|+|||||+.+++.. ....-..++|++.... ...+ ..-+..+...... .......+.+.+..
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi-~~ra~rlg~~~~~--l~~~~e~~l~~i~~ 150 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQI-KLRAERLGLPSDN--LYLLAETNLEAILA 150 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHH-HHHHHHcCCChhc--EEEeCCCCHHHHHH
Confidence 45678999999999999999999884 3222335778876542 2222 2223333221111 00111122334444
Q ss_pred HHHHHhCCceEEEEEeCCC
Q 039728 86 TLRGHLKDKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~ 104 (263)
.+. ..++-++|+|.+.
T Consensus 151 ~i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 151 TIE---EEKPDLVVIDSIQ 166 (446)
T ss_pred HHH---hhCCCEEEEechh
Confidence 332 2356689999975
No 384
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.24 E-value=0.0033 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...|+|+|++|+||+++|+.+..
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHH
Confidence 45689999999999999998876
No 385
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.24 E-value=0.0047 Score=55.37 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...++|+|++|+|||||++-+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999998876
No 386
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0014 Score=60.01 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
+.-.+.+.||.|+|||.||+++.. .+-...+..+-++.+.... ..++... +....+ ......
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e--------vskligs-----p~gyvG---~e~gg~ 651 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE--------VSKLIGS-----PPGYVG---KEEGGQ 651 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh--------hhhccCC-----Cccccc---chhHHH
Confidence 456778899999999999999988 5555555566666554222 2222111 011111 123345
Q ss_pred HHHHhCCceE-EEEEeCCC--CchhHHHHHHhc
Q 039728 87 LRGHLKDKNY-MVVFDDVW--KIDFWGDVEHAL 116 (263)
Q Consensus 87 ~~~~l~~~~~-LlvlD~~~--~~~~~~~l~~~l 116 (263)
+.+.++.+|+ +++|||++ +...+.-+...+
T Consensus 652 LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 652 LTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred HHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 6677777774 88899998 344444344433
No 387
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.24 E-value=0.0055 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999998763
No 388
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.23 E-value=0.0002 Score=52.93 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
++|+|++|+||||++..+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 389
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.23 E-value=0.0024 Score=49.23 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 039728 11 VAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~ 30 (263)
|+|.|++|+||||++..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999987
No 390
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.01 Score=47.83 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=46.3
Q ss_pred CceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc-hhhhhhhccCCCccceeccCCCccchHHHHHH
Q 039728 93 DKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH-MNVAKACKSSSPVHIHELETLPPNEAWKLFCR 163 (263)
Q Consensus 93 ~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~ 163 (263)
+++-++|+|+++ +....+.+++.+...+.++.+|++|.+ ..+.+...++. ..+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRc--q~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRT--QIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcc--eeeeCCC-cHHHHHHHHHH
Confidence 345688999998 455678888888887777766666654 45555555443 6777766 66666666653
No 391
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.22 E-value=0.002 Score=58.33 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....|+|.|.+|+|||||++-+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999998866
No 392
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.006 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999876
No 393
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.22 E-value=0.00021 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+++|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 394
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.22 E-value=0.0037 Score=45.40 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=17.2
Q ss_pred EEcCCCCcHHHHHHHHhC
Q 039728 13 VVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 13 i~G~~G~GKTtLa~~~~~ 30 (263)
|.|+||+||||++..++.
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 689999999999999998
No 395
>PRK03839 putative kinase; Provisional
Probab=97.22 E-value=0.00024 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.|+|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 396
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.21 E-value=0.0059 Score=48.49 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....+++|.|+.|+|||||++.++--
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998773
No 397
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.21 E-value=0.0011 Score=63.20 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCc------c------c
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTP------V------E 74 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~------~ 74 (263)
+..+++|+|++|+||||.+-.++.. ......+.+.+.-............++..+....+.... . .
T Consensus 81 ~~~vvii~g~TGSGKTTqlPq~lle--~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~ 158 (1283)
T TIGR01967 81 ENQVVIIAGETGSGKTTQLPKICLE--LGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTL 158 (1283)
T ss_pred hCceEEEeCCCCCCcHHHHHHHHHH--cCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccCCCce
Confidence 4568999999999999999888763 221222223222222233444555555555433221100 0 0
Q ss_pred cccccHHHHHHHHHHH-hCCceEEEEEeCCCCc----hhHHHHHHhccCCCCCcEEEEEeCch
Q 039728 75 IHKMEEMELITTLRGH-LKDKNYMVVFDDVWKI----DFWGDVEHALLDNKKCGRIIVTTRHM 132 (263)
Q Consensus 75 ~~~~~~~~~~~~~~~~-l~~~~~LlvlD~~~~~----~~~~~l~~~l~~~~~~~~iliTsR~~ 132 (263)
..-.+...++..+... .-.+--.||||++|.. +.+-.+...+....+..++|++|-..
T Consensus 159 I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATl 221 (1283)
T TIGR01967 159 VKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATI 221 (1283)
T ss_pred eeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 1112333444444321 1112237999999841 22222222233334567888888654
No 398
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.20 E-value=0.00034 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.++++|.||+|+|||||+..++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5688999999999999999999883
No 399
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.20 E-value=0.00029 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
++++|.|++|+||||++..++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998873
No 400
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.20 E-value=0.002 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.20 E-value=0.0002 Score=53.79 Aligned_cols=21 Identities=43% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+|+|+|++|+||||+++.+++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 402
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.004 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++|.|+.|+|||||++.+.-
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 45789999999999999998754
No 403
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.19 E-value=0.005 Score=49.02 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999998763
No 404
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.19 E-value=0.0061 Score=54.61 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...++|+|++|+|||||++-+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998876
No 405
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.19 E-value=0.00031 Score=65.02 Aligned_cols=180 Identities=13% Similarity=0.143 Sum_probs=84.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
+..++++|+||.+.||||+.++++--. +-.+ ..+||.+... ....+..+...+.....-. ....+...-..
T Consensus 605 ~~~~~~iiTGpN~~GKSt~lr~v~l~~-ilAq--~G~~VPa~~a--~i~~~d~I~triga~d~i~----~g~STF~~E~~ 675 (854)
T PRK05399 605 EERRLLLITGPNMAGKSTYMRQVALIV-LLAQ--IGSFVPAESA--RIGIVDRIFTRIGASDDLA----SGRSTFMVEMT 675 (854)
T ss_pred CCCcEEEEECCCCCCcHHHHHHHHHHH-HHHh--cCCceeccce--EecccCeeeeccCcccccc----cCcccHHHHHH
Confidence 456899999999999999999976521 0001 1223333221 0111222222222111100 00011111222
Q ss_pred HHHHHhC--CceEEEEEeCCC---Cch----hHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCccc
Q 039728 86 TLRGHLK--DKNYMVVFDDVW---KID----FWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNE 156 (263)
Q Consensus 86 ~~~~~l~--~~~~LlvlD~~~---~~~----~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e 156 (263)
.+...+. ..+-|+|+|++- +.. ....+...+.. ..++.+|++|.................+.+.-....+
T Consensus 676 ~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~-~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~ 754 (854)
T PRK05399 676 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHD-KIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGG 754 (854)
T ss_pred HHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHh-cCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEeCC
Confidence 2222232 367899999983 111 11223333332 2257889999886655443322222223332222223
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS 204 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 204 (263)
...++.+...+.. + ...+-++++.+ |+|-.+...|..+.
T Consensus 755 ~l~flYkl~~G~~-~-------~SyGi~VA~la-GlP~~VI~rA~~i~ 793 (854)
T PRK05399 755 DIVFLHKVVPGAA-D-------KSYGIHVAKLA-GLPASVIKRAREIL 793 (854)
T ss_pred eEEEEEEeCcCCC-C-------CcHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 3323333322221 1 35666666655 78888777776653
No 406
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.19 E-value=0.0021 Score=53.49 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC-CCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE-YNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
+.+++.+.||.|+||||-...++........-..+..++.... ....+-+...+.-+.... ..-.+..++..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~-------~vv~~~~el~~ 274 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL-------EVVYSPKELAE 274 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------EEecCHHHHHH
Confidence 4899999999999999655555442221233334556766553 233333444444332221 11112233333
Q ss_pred HHHHHhCCceEEEEEeCCC----CchhHHHHHHhccCC
Q 039728 86 TLRGHLKDKNYMVVFDDVW----KIDFWGDVEHALLDN 119 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~----~~~~~~~l~~~l~~~ 119 (263)
.+. .+.+.. ++++|=+. +.....++...+...
T Consensus 275 ai~-~l~~~d-~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 275 AIE-ALRDCD-VILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred HHH-HhhcCC-EEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 332 333343 45567654 344555666655554
No 407
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.18 E-value=0.0045 Score=48.62 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468899999999999999998763
No 408
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0084 Score=49.76 Aligned_cols=60 Identities=15% Similarity=-0.001 Sum_probs=40.3
Q ss_pred CCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 142 SPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 142 ~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
+++..++++..+.+|+.++....+...--.. ....++-.+++.-..+|||-.+.-++..+
T Consensus 401 qpf~pi~v~nYt~~E~~~~i~YYl~~nwl~k--kv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 401 QPFVPIEVENYTLDEFEALIDYYLQSNWLLK--KVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCcCccccCCCCHHHHHHHHHHHHHhhHHHh--hcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 4456789999999999999887764321000 00003456778888899997777776654
No 409
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.18 E-value=0.0042 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...|+|+|++|+||+++|+.+..
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHH
Confidence 45688999999999999998876
No 410
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.0077 Score=46.06 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3468999999999999999998774
No 411
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.18 E-value=0.0058 Score=47.51 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4558899999999999999998763
No 412
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0035 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...++|+|++|+|||||+..+..
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G 369 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLG 369 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999998865
No 413
>PRK04040 adenylate kinase; Provisional
Probab=97.17 E-value=0.0003 Score=53.08 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999883
No 414
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.17 E-value=0.0023 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|.|++|+|||||+..+..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999998876
No 415
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.17 E-value=0.0044 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|++|+|||||++-++.
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999876
No 416
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.17 E-value=0.00042 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|++|+||||+++.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999883
No 417
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.17 E-value=0.0045 Score=44.88 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+++|+|.+|+||||+++.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.17 E-value=0.0079 Score=49.30 Aligned_cols=26 Identities=50% Similarity=0.701 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+..++++.|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999999874
No 419
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.01 Score=46.59 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4468899999999999999999863
No 420
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.16 E-value=0.0031 Score=55.44 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=65.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC--CCHHHHHHHHHHHHhhccCCCCc----------c-
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE--YNKNELLRTVIKEFHSFSGQPTP----------V- 73 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~----------~- 73 (263)
...+|+|.|..|+||||-+.+++.. ..|...--+-+.++ ......-..+...+....+.... .
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~e----dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYE----DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHh----cccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 5679999999999999877776652 22221112333332 33444455555555433222110 0
Q ss_pred -ccccccHHHH-HHHHHHHhCCceEEEEEeCCCC----chhHHHHHHhccCCCCCcEEEEEeCchhhhh
Q 039728 74 -EIHKMEEMEL-ITTLRGHLKDKNYMVVFDDVWK----IDFWGDVEHALLDNKKCGRIIVTTRHMNVAK 136 (263)
Q Consensus 74 -~~~~~~~~~~-~~~~~~~l~~~~~LlvlD~~~~----~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 136 (263)
...-.+..-+ ...+....-.+--++|+|+++. .+.+--++..........++||||-..+...
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~k 514 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQK 514 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHH
Confidence 0111222222 2222332223456899999984 2333333333334455779999998765443
No 421
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.16 E-value=0.001 Score=57.86 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCC----C-C---cccccc
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQ----P-T---PVEIHK 77 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~-~---~~~~~~ 77 (263)
....+++|.|++|+|||||+.+++.. ...+-..++|++.... ...+.... ..+.-.... . . ......
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 56788999999999999999999884 3233345778876653 33333332 222211000 0 0 000111
Q ss_pred ccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 039728 78 MEEMELITTLRGHLKD-KNYMVVFDDVW 104 (263)
Q Consensus 78 ~~~~~~~~~~~~~l~~-~~~LlvlD~~~ 104 (263)
...+..+..+.+.+.. ++-++|+|.+.
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2234566666666643 55689999986
No 422
>PHA02774 E1; Provisional
Probab=97.15 E-value=0.002 Score=56.16 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEe
Q 039728 3 NGRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTV 46 (263)
Q Consensus 3 ~~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~ 46 (263)
.+.++...++|+||+|+|||.++..+++- .. ...+.|++.
T Consensus 429 ~~~PKknciv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~ 468 (613)
T PHA02774 429 KGIPKKNCLVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNS 468 (613)
T ss_pred hcCCcccEEEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEEC
Confidence 34456679999999999999999999983 32 223447765
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.15 E-value=0.00047 Score=46.50 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~ 29 (263)
....++|.|++|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34688999999999999999976
No 424
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.14 E-value=0.0075 Score=55.18 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|+.|+|||||++-+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999998876
No 425
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.14 E-value=0.00036 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++++|.|++|+|||||+..++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999998
No 426
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.14 E-value=0.0013 Score=53.68 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=26.7
Q ss_pred EEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchh
Q 039728 96 YMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMN 133 (263)
Q Consensus 96 ~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 133 (263)
-++|+|++.+... .++...+...++|+||++|.-...
T Consensus 353 ~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLTP-HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccCH-HHHHHHHHhccCCCEEEEcCCHHH
Confidence 4889999975432 345666777789999999876544
No 427
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0017 Score=49.62 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNND 32 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~ 32 (263)
.-+-+|.||.|+|||||+..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999987753
No 428
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.13 E-value=0.00037 Score=49.73 Aligned_cols=21 Identities=33% Similarity=0.707 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+++|.|++|+|||||+..+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999998
No 429
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.13 E-value=0.00052 Score=41.24 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.+|+|+.|+|||||..++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999977654
No 430
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.011 Score=53.38 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++..
T Consensus 27 Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999873
No 431
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00044 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.||+|+|||||+++++.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999994
No 432
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0028 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+-+.+.||+|.|||.|++.++.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHh
Confidence 4456778999999999999999998
No 433
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.11 E-value=0.007 Score=47.14 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468899999999999999998763
No 434
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00038 Score=50.63 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.|+|+|.||+||||++..+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 589999999999999998873
No 435
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.10 E-value=0.00066 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+|.|++|+||||+++.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 436
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.00065 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+..+++|+|.+|+||||+++.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999883
No 437
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00059 Score=49.85 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+..+|+++|.+|+||||+|..+...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 34569999999999999999999883
No 438
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0052 Score=48.74 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+-|.++|++|.|||-||+++++
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhc
Confidence 345688999999999999999999
No 439
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.09 E-value=0.0055 Score=54.84 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...++|+|++|+|||||++-++.
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999876
No 440
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.09 E-value=0.0094 Score=52.71 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|+.|+|||||++-+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998866
No 441
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.08 E-value=0.00036 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+|.|++|+||||++..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 442
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.07 E-value=0.00039 Score=52.06 Aligned_cols=22 Identities=55% Similarity=0.715 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+|.|.+|+||||++..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999873
No 443
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.07 E-value=0.01 Score=53.19 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|.|+.|+|||||++-+..
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcc
Confidence 456789999999999999998866
No 444
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.06 E-value=0.00078 Score=56.04 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHH--HHhhccCCCCccccccccHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIK--EFHSFSGQPTPVEIHKMEEMEL 83 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~ 83 (263)
....|+|+|+.|+||||++..++. ......+ ....+.+.++.... +..+.. ....+. .. +......
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~--~i~~~~~~~~~Ivt~EdpiE~~--~~~~~~~~~~v~Q~------~v-~~~~~~~ 201 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIR--ELAEAPDSHRKILTYEAPIEFV--YDEIETISASVCQS------EI-PRHLNNF 201 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEeCCCceEe--ccccccccceeeee------ec-cccccCH
Confidence 457899999999999999999887 3322211 11122233322210 011000 000000 00 0011234
Q ss_pred HHHHHHHhCCceEEEEEeCCCCchhHHHHH
Q 039728 84 ITTLRGHLKDKNYMVVFDDVWKIDFWGDVE 113 (263)
Q Consensus 84 ~~~~~~~l~~~~~LlvlD~~~~~~~~~~l~ 113 (263)
...++..++..|-.+++.++.+.+......
T Consensus 202 ~~~l~~aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 202 AAGVRNALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HHHHHHHhccCCCEEeeeeeCCHHHHHHHH
Confidence 455666778888899999988776554433
No 445
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.06 E-value=0.0026 Score=50.44 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHhCCcccccCCcee-EEEEeCCCC-CHHHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLA-GKLFNNDGLKTHFSSR-AWVTVGKEY-NKNELLRTVI 60 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~ 60 (263)
+-..+.|.|.+|+|||+|+ ..+.++ . +.+.+ +|.-++... ...++..++.
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~ 120 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLE 120 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHH
Confidence 3445789999999999996 555542 1 22333 566666543 3444444444
No 446
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.06 E-value=0.00062 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++++|.||+|+||+|++..++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999983
No 447
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.06 E-value=0.00075 Score=48.06 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
..-+|.|.||+|+|||||.....-...-.-.+.+.+|++
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~ 65 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEEC
Confidence 346889999999999999988766433333344566665
No 448
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.06 E-value=0.0033 Score=54.98 Aligned_cols=125 Identities=17% Similarity=0.280 Sum_probs=67.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCc----------c--c
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTP----------V--E 74 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------~--~ 74 (263)
...+++|.|+.|+||||-+-+++...-...+ +.+=++-.........-..++.......+.... . .
T Consensus 65 ~nqvlIviGeTGsGKSTQipQyL~eaG~~~~--g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Tr 142 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQIPQYLAEAGFASS--GKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTR 142 (674)
T ss_pred HCCEEEEEcCCCCCccccHhHHHHhcccccC--CcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCcee
Confidence 4678999999999999999998874222221 222222222334445555555555543332211 0 0
Q ss_pred cccccHHHHHHHH-HHHhCCceEEEEEeCCCCch----hHHHHHHhccCCCCCcEEEEEeCchh
Q 039728 75 IHKMEEMELITTL-RGHLKDKNYMVVFDDVWKID----FWGDVEHALLDNKKCGRIIVTTRHMN 133 (263)
Q Consensus 75 ~~~~~~~~~~~~~-~~~l~~~~~LlvlD~~~~~~----~~~~l~~~l~~~~~~~~iliTsR~~~ 133 (263)
..-.+..-+++.+ .+-+-.+=-+||||++++.. .+--+++.+...++..|+||+|-.-+
T Consensus 143 ikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATld 206 (674)
T KOG0922|consen 143 IKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLD 206 (674)
T ss_pred EEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 1112333333222 22222344589999999533 33344444555566779999887643
No 449
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0069 Score=49.09 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++-.
T Consensus 32 Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 32 GSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 457999999999999999998763
No 450
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.06 E-value=0.0022 Score=51.09 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFH 64 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 64 (263)
....+++|-|.+|+|||+++.+++.+..... ...++|++... +.......++....
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm--~~~~l~~R~la~~s 72 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEM--SEEELAARLLARLS 72 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS---HHHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCC--CHHHHHHHHHHHhh
Confidence 3456899999999999999999988543332 25677888764 44555555555443
No 451
>PRK14529 adenylate kinase; Provisional
Probab=97.06 E-value=0.012 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
|+|.|++|+||||+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~ 23 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKK 23 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999874
No 452
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.06 E-value=0.0052 Score=53.27 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=32.6
Q ss_pred HHHHhCCceEEEEEeCCCC---chhHHHHHHhccCC--CCCcEEEEEeCchhhhhhhcc
Q 039728 87 LRGHLKDKNYMVVFDDVWK---IDFWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKS 140 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~---~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~ 140 (263)
+...+..+|-+||+|+.-+ .....++...+... ..|..+|+.|.+..+......
T Consensus 440 IARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 440 IARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred HHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc
Confidence 3445566788999998652 22223333333332 236788889998777665543
No 453
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.05 E-value=0.0054 Score=48.73 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccc--ccCCceeEEEEeCCCC-CHHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGL--KTHFSSRAWVTVGKEY-NKNELLRTVIK 61 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 61 (263)
..+.|.|.+|+|||+|+.++.++... +..-..++|.-+++.. +..+++.++..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE 125 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhh
Confidence 44689999999999999998874321 1223456787777654 34444444433
No 454
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.05 E-value=0.0079 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|+.|+|||||++.+..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999998865
No 455
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.05 E-value=0.0028 Score=55.73 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccC------CC--Ccccccc
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSG------QP--TPVEIHK 77 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~--~~~~~~~ 77 (263)
....++.|.|++|+|||+++.+++.. ....-..++|++.... ...+.... ..+..... .. .......
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 45678899999999999999999873 2233456788877653 33333222 22221100 00 0000111
Q ss_pred ccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 039728 78 MEEMELITTLRGHLKD-KNYMVVFDDVW 104 (263)
Q Consensus 78 ~~~~~~~~~~~~~l~~-~~~LlvlD~~~ 104 (263)
.........+.+.+.. +.-++|+|.+.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2234445555555533 45589999985
No 456
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.05 E-value=0.0062 Score=53.52 Aligned_cols=129 Identities=13% Similarity=0.041 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccc---CCc---eeEEEEeCC---------------CC--CHHHHHHHHHHHHh
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKT---HFS---SRAWVTVGK---------------EY--NKNELLRTVIKEFH 64 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~---~~~---~~~~~~~~~---------------~~--~~~~~~~~l~~~l~ 64 (263)
...+.|.|++|+|||||.+.++.-.-... .++ ..+|+.-.. .. -.+..+.+++.+..
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vg 498 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcC
Confidence 34578999999999999999977311110 111 134443111 00 11223333333332
Q ss_pred hc-----cCCCC-ccccccccHHHHHHHHHHHhCCceEEEEEeCCC---CchhHHHHHHhccCCCCCcEEEEEeCchhhh
Q 039728 65 SF-----SGQPT-PVEIHKMEEMELITTLRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDNKKCGRIIVTTRHMNVA 135 (263)
Q Consensus 65 ~~-----~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 135 (263)
.. .+... -+..-...+.+.+...+ .+=+||-.+|||+.. +.+.-..+...+...-+++.||-+++.....
T Consensus 499 L~~L~~rl~~~~~W~~vLS~GEqQRlafAR-ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 499 LGDLAERLDEEDRWDRVLSGGEQQRLAFAR-LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred cHHHHHHHhccCcHhhhcChhHHHHHHHHH-HHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 11 11110 11111222334444333 334688899999976 3333444555555555677777777766554
Q ss_pred hh
Q 039728 136 KA 137 (263)
Q Consensus 136 ~~ 137 (263)
..
T Consensus 578 ~~ 579 (604)
T COG4178 578 NF 579 (604)
T ss_pred HH
Confidence 43
No 457
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.05 E-value=0.0017 Score=53.15 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNKNEL 55 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 55 (263)
....++.|+|++|+|||+++.+++....... .-..++|++.....+...+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl 146 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI 146 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH
Confidence 4578889999999999999999986432211 1126889998776665543
No 458
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.04 E-value=0.00055 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.+|+||||+|||+++..++..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 6899999999999888777663
No 459
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.04 E-value=0.00052 Score=47.49 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
|+|.|.+|+|||||++.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 460
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.04 E-value=0.0039 Score=51.48 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCHHHHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNKNELLRTVIKEF 63 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l 63 (263)
....++.|+|++|+|||+++.+++....... .-..++|++.....++..+ .+++..+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~ 181 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERF 181 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHc
Confidence 5577889999999999999998875322211 1125789998877665543 3444443
No 461
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.04 E-value=0.0031 Score=56.19 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.++.+|+|.+|+||||++..++.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~ 189 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA 189 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999988876
No 462
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.00053 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|++|+|||||+..++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999883
No 463
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.03 E-value=0.0028 Score=50.05 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+|+|.|.+|+||||++..+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998887
No 464
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.03 E-value=0.0032 Score=44.44 Aligned_cols=36 Identities=17% Similarity=-0.140 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
.+.|.|++|+|||+.+..+............++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 478999999999999988877432222334445543
No 465
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.02 E-value=0.00053 Score=53.73 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=21.9
Q ss_pred EEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 13 VVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 13 i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
|.||+|+||||++..+.+.. ......++.++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~--~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL--ESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH--TTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHH--HhccCCceEEEcch
Confidence 68999999999999988843 33333455666544
No 466
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.02 E-value=0.00047 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+..+|+|+|+||+|||||+..+...
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 346789999999999999999998874
No 467
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.02 E-value=0.00063 Score=48.70 Aligned_cols=39 Identities=33% Similarity=0.352 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
++|.|+|+.|+|||||++.+++.. .+..+...++.....
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 579999999999999999999953 224454444555554
No 468
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.02 E-value=0.0035 Score=47.13 Aligned_cols=21 Identities=29% Similarity=0.075 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 039728 9 SVVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~ 29 (263)
+.++|.|+.|+|||+.+..++
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~ 45 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPA 45 (201)
T ss_pred CcEEEECCCCCchhHHHHHHH
Confidence 678999999999999444443
No 469
>PRK06217 hypothetical protein; Validated
Probab=97.02 E-value=0.00044 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.|+|.|.+|+||||+++++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999984
No 470
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.02 E-value=0.0087 Score=48.09 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++.-
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3457899999999999999998863
No 471
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00023 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|.|-|++|+||||+++.+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999984
No 472
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.02 E-value=0.0028 Score=53.76 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC-CCCHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK-EYNKNELLRT 58 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 58 (263)
....++|.|++|+|||||+..++.. .. .+..++..++. .....+++.+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~--~~--~d~~vi~~iGeRgrEv~efl~~ 202 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA--PD--ADSNVLVLIGERGREVREFIDF 202 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC--CC--CCEEEEEEECCCchHHHHHHHH
Confidence 3457899999999999999998873 22 22344444444 3334344444
No 473
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.01 E-value=0.00038 Score=51.29 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
++|+|++|+||||+++.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999983
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.01 E-value=0.00077 Score=49.82 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++.|.|++|+|||||+..+...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 45679999999999999999999874
No 475
>PRK12678 transcription termination factor Rho; Provisional
Probab=97.01 E-value=0.0027 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-...+|+|++|+|||||+..+++.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~ 439 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANA 439 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHH
Confidence 345689999999999999999883
No 476
>PRK14527 adenylate kinase; Provisional
Probab=97.01 E-value=0.00062 Score=51.58 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|+|++|+||||+++.++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 477
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.01 E-value=0.0092 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|.|+.|+|||||++.++.
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998876
No 478
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.01 E-value=0.0032 Score=54.24 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....+++|.|++|+|||||+.+++.. ....-..++|++...
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 55678999999999999999999774 222223577887654
No 479
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.00 E-value=0.00059 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+++|.|++|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999873
No 480
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.00 E-value=0.02 Score=51.84 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3457899999999999999999873
No 481
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.014 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++..
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999998763
No 482
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.00 E-value=0.00041 Score=52.11 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999884
No 483
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.00 E-value=0.00062 Score=47.96 Aligned_cols=26 Identities=38% Similarity=0.346 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNND 32 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~ 32 (263)
...+++|.|+.|+||||+++.++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999854
No 484
>PRK13808 adenylate kinase; Provisional
Probab=97.00 E-value=0.0086 Score=49.08 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 039728 11 VAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~ 30 (263)
|+|+|+||+||||++..++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~ 22 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQ 22 (333)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999987
No 485
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.99 E-value=0.0077 Score=52.89 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
...|+|+|++|+||+++|+.+... ........+.+++...
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~--s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAA--SPRADKPLVYLNCAAL 249 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHh--CCcCCCCeEEEEcccC
Confidence 456889999999999999999873 2222223455666654
No 486
>PRK00625 shikimate kinase; Provisional
Probab=96.99 E-value=0.0005 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.|+|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999883
No 487
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.99 E-value=0.014 Score=53.48 Aligned_cols=24 Identities=50% Similarity=0.617 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|++|+|||||++-+..
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999998876
No 488
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.98 E-value=0.0071 Score=51.83 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=37.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEF 63 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 63 (263)
+-....+++|.|.||+|||+++..++.+...+... .++|++... +...+...++...
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~-~v~~fSlEm--~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALREGK-PVLFFSLEM--SAEQLGERLLASK 246 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-cEEEEECCC--CHHHHHHHHHHHH
Confidence 34556789999999999999999998643223233 466777553 4555555555443
No 489
>PRK08149 ATP synthase SpaL; Validated
Probab=96.98 E-value=0.0066 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+...++|.|++|+|||||+..++..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcC
Confidence 3456799999999999999999873
No 490
>PRK14530 adenylate kinase; Provisional
Probab=96.98 E-value=0.00056 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+.|+|.|++|+||||+++.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 491
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.012 Score=46.91 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
+...+++.|++|+||||++..+... ....-..+.+++...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~ 113 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDH 113 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCC
Confidence 4478999999999999999988763 222223455665543
No 492
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.98 E-value=0.0042 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++..
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 493
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=96.98 E-value=0.00042 Score=63.95 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..++++|+||...||||+.++++-
T Consensus 590 ~~~~~~iITGPNmgGKSt~lrqval 614 (840)
T TIGR01070 590 HNRRMLLITGPNMGGKSTYMRQTAL 614 (840)
T ss_pred CCccEEEEECCCCCCchHHHHHHHH
Confidence 3468999999999999999999764
No 494
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.96 E-value=0.011 Score=52.84 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...++|.|+.|+|||||++-++.
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999998876
No 495
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.96 E-value=0.0088 Score=51.58 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhCCcccc-----cCCceeEEEEeCCCCC
Q 039728 8 RSVVAVVGVGGLGKTTLA-GKLFNNDGLK-----THFSSRAWVTVGKEYN 51 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa-~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 51 (263)
-..++|.|.+|+|||+|| ..+.++.... .+-..++|+-++...+
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~r 238 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCS 238 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchH
Confidence 345688999999999996 6666642111 2234566888877654
No 496
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.96 E-value=0.0063 Score=49.37 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...++++.|+.|+|||||.+.++..
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999873
No 497
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00066 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..-.|.|.|++|||||||.+.+.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999998865
No 498
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.96 E-value=0.015 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....++|+|+.|+|||||++.++..
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998763
No 499
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.015 Score=51.41 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++..
T Consensus 345 Ge~~~l~G~NGsGKSTLl~~i~G~ 368 (530)
T PRK15064 345 GERLAIIGENGVGKTTLLRTLVGE 368 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999863
No 500
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0063 Score=51.08 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+....|+|+||.|+|||||..-+.-.
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcC
Confidence 34567899999999999999988763
Done!