Query 039728
Match_columns 263
No_of_seqs 153 out of 1579
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 22:02:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.1E-36 7.1E-41 263.5 19.4 240 5-263 149-404 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.1E-32 3.7E-37 246.7 17.8 224 6-263 148-386 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-31 9.1E-36 251.3 22.7 239 4-263 143-394 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-31 5.6E-36 235.2 19.4 234 5-262 144-393 (591)
5 2qen_A Walker-type ATPase; unk 99.7 3.9E-16 1.3E-20 128.4 14.5 184 9-204 32-250 (350)
6 2fna_A Conserved hypothetical 99.7 1E-15 3.5E-20 126.2 16.4 226 9-257 31-301 (357)
7 1w5s_A Origin recognition comp 99.7 9E-16 3.1E-20 129.1 14.4 230 6-258 48-320 (412)
8 2qby_B CDC6 homolog 3, cell di 99.6 5.3E-14 1.8E-18 117.2 18.9 231 6-257 43-295 (384)
9 2v1u_A Cell division control p 99.6 1.5E-13 5.2E-18 114.4 18.8 229 6-257 42-301 (387)
10 2qby_A CDC6 homolog 1, cell di 99.5 2.7E-13 9.2E-18 112.8 15.6 229 6-257 43-297 (386)
11 1fnn_A CDC6P, cell division co 99.5 5.4E-13 1.8E-17 111.2 17.0 228 8-258 44-300 (389)
12 1njg_A DNA polymerase III subu 99.5 3E-13 1E-17 105.2 12.3 105 93-204 125-232 (250)
13 2chg_A Replication factor C sm 99.4 2.7E-12 9.3E-17 98.4 12.6 165 9-203 39-207 (226)
14 1sxj_B Activator 1 37 kDa subu 99.2 6.6E-11 2.3E-15 96.0 8.8 161 10-200 44-210 (323)
15 3te6_A Regulatory protein SIR3 99.2 6.8E-10 2.3E-14 89.2 14.0 157 5-167 42-213 (318)
16 1iqp_A RFCS; clamp loader, ext 99.1 6.9E-10 2.4E-14 90.2 11.6 164 9-203 47-215 (327)
17 1d2n_A N-ethylmaleimide-sensit 99.1 3.4E-09 1.2E-13 84.0 15.2 151 5-191 61-228 (272)
18 1hqc_A RUVB; extended AAA-ATPa 99.1 7.1E-10 2.4E-14 90.1 10.7 156 7-203 37-214 (324)
19 1a5t_A Delta prime, HOLB; zinc 99.1 3.5E-09 1.2E-13 86.4 14.2 95 93-199 107-204 (334)
20 1jr3_A DNA polymerase III subu 99.0 1.1E-09 3.7E-14 90.7 10.8 103 93-202 118-223 (373)
21 1xwi_A SKD1 protein; VPS4B, AA 99.0 8.3E-09 2.9E-13 83.7 15.4 164 7-202 44-225 (322)
22 3bos_A Putative DNA replicatio 99.0 1.7E-10 6E-15 89.5 5.1 157 7-202 51-219 (242)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.0 1.6E-08 5.4E-13 79.5 16.3 165 7-202 38-224 (262)
24 3h4m_A Proteasome-activating n 99.0 1.8E-09 6.2E-14 86.1 10.7 162 7-201 50-232 (285)
25 2chq_A Replication factor C sm 99.0 2E-09 6.8E-14 87.1 11.1 162 9-203 39-207 (319)
26 2z4s_A Chromosomal replication 99.0 4.9E-10 1.7E-14 94.7 7.5 182 8-221 130-333 (440)
27 3syl_A Protein CBBX; photosynt 98.9 1E-08 3.5E-13 82.6 11.9 137 5-167 64-219 (309)
28 3pvs_A Replication-associated 98.9 1.1E-08 3.6E-13 86.6 12.2 162 8-203 50-218 (447)
29 1sxj_E Activator 1 40 kDa subu 98.9 2.5E-09 8.5E-14 87.9 7.8 104 93-203 133-240 (354)
30 3eie_A Vacuolar protein sortin 98.9 1.2E-08 3.9E-13 82.9 11.0 162 7-201 50-229 (322)
31 2zan_A Vacuolar protein sortin 98.9 3.2E-08 1.1E-12 83.8 13.6 164 7-202 166-347 (444)
32 3uk6_A RUVB-like 2; hexameric 98.9 3E-08 1E-12 81.9 13.0 100 95-202 190-305 (368)
33 3d8b_A Fidgetin-like protein 1 98.9 2.3E-08 7.8E-13 82.3 11.9 164 6-202 115-297 (357)
34 1sxj_D Activator 1 41 kDa subu 98.9 2.4E-08 8.2E-13 81.9 11.8 171 10-199 60-234 (353)
35 3vfd_A Spastin; ATPase, microt 98.9 7.5E-08 2.6E-12 80.2 14.8 161 8-201 148-327 (389)
36 1sxj_A Activator 1 95 kDa subu 98.9 1.2E-08 4E-13 88.1 10.1 173 7-203 76-255 (516)
37 3pfi_A Holliday junction ATP-d 98.8 3.9E-08 1.3E-12 80.3 12.6 156 6-202 53-229 (338)
38 1l8q_A Chromosomal replication 98.8 3.6E-08 1.2E-12 80.0 12.1 159 7-200 36-208 (324)
39 4b4t_J 26S protease regulatory 98.8 1.4E-08 4.7E-13 83.7 9.4 154 7-193 181-354 (405)
40 3b9p_A CG5977-PA, isoform A; A 98.8 4.6E-08 1.6E-12 78.3 11.7 162 7-201 53-234 (297)
41 2qp9_X Vacuolar protein sortin 98.8 3.7E-08 1.3E-12 80.9 11.4 161 8-201 84-262 (355)
42 4b4t_L 26S protease subunit RP 98.8 2.4E-08 8.3E-13 83.5 10.0 155 6-193 213-387 (437)
43 4b4t_H 26S protease regulatory 98.7 4.4E-08 1.5E-12 81.9 9.4 155 6-193 241-415 (467)
44 1jbk_A CLPB protein; beta barr 98.7 1E-08 3.5E-13 76.4 5.1 25 7-31 42-66 (195)
45 1lv7_A FTSH; alpha/beta domain 98.7 1.4E-07 4.6E-12 74.0 11.5 160 8-200 45-225 (257)
46 3cf0_A Transitional endoplasmi 98.7 2.2E-07 7.6E-12 74.6 12.9 155 7-194 48-222 (301)
47 3u61_B DNA polymerase accessor 98.7 2.1E-07 7E-12 75.5 12.6 163 6-203 46-219 (324)
48 4b4t_M 26S protease regulatory 98.7 2.3E-08 7.8E-13 83.6 6.5 154 6-192 213-386 (434)
49 4b4t_I 26S protease regulatory 98.7 6.9E-08 2.4E-12 80.0 8.9 154 7-193 215-388 (437)
50 1sxj_C Activator 1 40 kDa subu 98.7 1.7E-07 5.7E-12 76.7 10.9 159 11-199 49-211 (340)
51 4b4t_K 26S protease regulatory 98.7 6.2E-08 2.1E-12 80.9 8.1 155 6-193 204-379 (428)
52 2gno_A DNA polymerase III, gam 98.6 2.2E-07 7.7E-12 74.5 10.9 131 8-165 18-152 (305)
53 3hu3_A Transitional endoplasmi 98.6 1.9E-07 6.3E-12 79.8 9.6 162 7-201 237-416 (489)
54 2ce7_A Cell division protein F 98.6 7E-07 2.4E-11 75.7 11.8 179 9-220 50-256 (476)
55 3t15_A Ribulose bisphosphate c 98.5 1.4E-06 4.8E-11 69.6 12.1 26 6-31 34-59 (293)
56 3cf2_A TER ATPase, transitiona 98.5 1.6E-07 5.5E-12 84.2 6.9 155 6-193 236-407 (806)
57 3ec2_A DNA replication protein 98.5 2.9E-07 9.9E-12 68.0 7.1 25 7-31 37-61 (180)
58 3n70_A Transport activator; si 98.5 3.9E-07 1.3E-11 64.8 6.7 91 8-132 24-116 (145)
59 4fcw_A Chaperone protein CLPB; 98.4 7.9E-07 2.7E-11 71.6 8.9 39 8-48 47-85 (311)
60 1in4_A RUVB, holliday junction 98.4 2.2E-05 7.5E-10 63.9 17.2 71 146-221 174-251 (334)
61 2r62_A Cell division protease 98.4 2.4E-08 8.2E-13 78.8 -0.7 23 9-31 45-67 (268)
62 2kjq_A DNAA-related protein; s 98.4 2E-07 7E-12 66.6 4.0 40 7-48 35-74 (149)
63 2w58_A DNAI, primosome compone 98.4 4.3E-07 1.5E-11 68.4 5.5 36 9-46 55-90 (202)
64 1ofh_A ATP-dependent HSL prote 98.4 2.9E-06 1E-10 68.1 10.5 24 8-31 50-73 (310)
65 1ixz_A ATP-dependent metallopr 98.3 3.6E-06 1.2E-10 65.7 8.6 150 11-193 52-221 (254)
66 3pxi_A Negative regulator of g 98.3 1.4E-05 4.6E-10 72.3 13.4 128 9-165 522-675 (758)
67 2x8a_A Nuclear valosin-contain 98.2 1.6E-05 5.6E-10 62.7 12.2 129 11-166 47-192 (274)
68 2dhr_A FTSH; AAA+ protein, hex 98.2 4.8E-06 1.6E-10 71.1 9.3 175 10-221 66-272 (499)
69 1iy2_A ATP-dependent metallopr 98.2 3.7E-06 1.3E-10 66.6 8.0 150 11-193 76-245 (278)
70 1ojl_A Transcriptional regulat 98.2 3.1E-05 1.1E-09 62.1 13.1 40 8-49 25-64 (304)
71 3co5_A Putative two-component 98.2 1.9E-06 6.3E-11 61.2 5.3 23 9-31 28-50 (143)
72 2c9o_A RUVB-like 1; hexameric 98.2 2.1E-05 7.2E-10 66.8 12.7 98 96-201 297-411 (456)
73 2p65_A Hypothetical protein PF 98.2 2E-06 6.7E-11 63.5 5.5 25 7-31 42-66 (187)
74 3m6a_A ATP-dependent protease 98.2 5.9E-06 2E-10 71.6 9.0 24 7-30 107-130 (543)
75 2cvh_A DNA repair and recombin 98.2 1.1E-05 3.9E-10 61.2 9.6 43 6-53 18-60 (220)
76 1qvr_A CLPB protein; coiled co 98.2 4E-06 1.4E-10 76.7 8.2 135 8-165 191-345 (854)
77 2bjv_A PSP operon transcriptio 98.2 4.3E-06 1.5E-10 65.7 7.0 40 8-49 29-68 (265)
78 3cf2_A TER ATPase, transitiona 98.1 1.5E-06 5E-11 78.0 3.0 135 7-168 510-664 (806)
79 1g5t_A COB(I)alamin adenosyltr 98.0 7.7E-06 2.6E-10 60.6 6.0 123 8-134 28-165 (196)
80 1ye8_A Protein THEP1, hypothet 98.0 7.5E-05 2.6E-09 54.9 11.3 70 91-162 96-173 (178)
81 1qvr_A CLPB protein; coiled co 98.0 8.9E-05 3E-09 67.9 13.4 39 8-48 588-626 (854)
82 2qgz_A Helicase loader, putati 98.0 2.5E-06 8.6E-11 68.5 2.3 37 8-46 152-189 (308)
83 2vhj_A Ntpase P4, P4; non- hyd 98.0 4.3E-06 1.5E-10 66.8 3.4 70 7-105 122-193 (331)
84 1jr3_D DNA polymerase III, del 97.9 0.0003 1E-08 57.3 14.0 159 6-200 16-185 (343)
85 2b8t_A Thymidine kinase; deoxy 97.9 7.4E-06 2.5E-10 62.4 3.7 113 6-131 10-125 (223)
86 1ypw_A Transitional endoplasmi 97.9 1.7E-05 5.8E-10 71.9 6.6 134 7-167 237-387 (806)
87 1r6b_X CLPA protein; AAA+, N-t 97.9 0.0002 7E-09 64.7 13.4 24 8-31 488-511 (758)
88 2w0m_A SSO2452; RECA, SSPF, un 97.9 3.6E-05 1.2E-09 58.9 7.2 40 7-48 22-61 (235)
89 1r6b_X CLPA protein; AAA+, N-t 97.9 0.00018 6.2E-09 65.0 12.7 137 7-165 206-362 (758)
90 1xp8_A RECA protein, recombina 97.8 9.7E-05 3.3E-09 60.6 9.8 90 6-104 72-162 (366)
91 3hr8_A Protein RECA; alpha and 97.8 4.4E-05 1.5E-09 62.2 7.4 90 6-104 59-149 (356)
92 3pxg_A Negative regulator of g 97.8 2.9E-05 9.9E-10 66.1 6.3 131 8-167 201-340 (468)
93 2r44_A Uncharacterized protein 97.8 3.7E-05 1.3E-09 62.3 6.2 132 9-167 47-200 (331)
94 2zr9_A Protein RECA, recombina 97.7 8.5E-05 2.9E-09 60.6 7.3 90 6-104 59-149 (349)
95 3jvv_A Twitching mobility prot 97.7 8.6E-05 2.9E-09 60.7 7.2 113 8-136 123-235 (356)
96 1n0w_A DNA repair protein RAD5 97.7 7.7E-05 2.6E-09 57.5 6.5 47 6-52 22-72 (243)
97 3io5_A Recombination and repai 97.6 0.00017 5.8E-09 57.5 8.0 88 10-104 30-121 (333)
98 3pxi_A Negative regulator of g 97.6 7.3E-05 2.5E-09 67.6 6.4 130 8-166 201-339 (758)
99 4g1u_C Hemin import ATP-bindin 97.6 0.00087 3E-08 52.5 11.6 24 7-30 36-59 (266)
100 1u94_A RECA protein, recombina 97.6 0.00011 3.6E-09 60.2 6.2 90 6-104 61-151 (356)
101 2eyu_A Twitching motility prot 97.6 3.8E-05 1.3E-09 60.1 3.4 113 7-135 24-136 (261)
102 2z43_A DNA repair and recombin 97.5 0.00025 8.4E-09 57.4 7.5 50 6-55 105-158 (324)
103 1sgw_A Putative ABC transporte 97.5 0.00044 1.5E-08 52.3 8.4 23 8-30 35-57 (214)
104 1v5w_A DMC1, meiotic recombina 97.5 0.00033 1.1E-08 57.1 8.2 49 6-54 120-172 (343)
105 1ypw_A Transitional endoplasmi 97.5 8.5E-06 2.9E-10 73.9 -1.6 25 7-31 510-534 (806)
106 1ex7_A Guanylate kinase; subst 97.5 3.6E-05 1.2E-09 56.9 1.9 22 9-30 2-23 (186)
107 2orw_A Thymidine kinase; TMTK, 97.5 2.2E-05 7.5E-10 58.1 0.6 24 8-31 3-26 (184)
108 2nq2_C Hypothetical ABC transp 97.4 0.0015 5.2E-08 50.7 10.8 24 8-31 31-54 (253)
109 1qhx_A CPT, protein (chloramph 97.4 6.3E-05 2.1E-09 55.1 2.8 23 8-30 3-25 (178)
110 3bh0_A DNAB-like replicative h 97.4 0.0007 2.4E-08 54.4 8.7 51 6-60 66-116 (315)
111 2i1q_A DNA repair and recombin 97.4 0.00037 1.3E-08 56.3 7.1 51 6-56 96-160 (322)
112 3dm5_A SRP54, signal recogniti 97.4 0.0012 4.2E-08 55.3 10.2 25 6-30 98-122 (443)
113 1kgd_A CASK, peripheral plasma 97.4 0.0001 3.5E-09 54.2 3.3 24 7-30 4-27 (180)
114 3sr0_A Adenylate kinase; phosp 97.4 0.0007 2.4E-08 50.9 7.9 107 10-138 2-121 (206)
115 3kl4_A SRP54, signal recogniti 97.4 0.0015 5.1E-08 54.7 10.5 26 6-31 95-120 (433)
116 1zp6_A Hypothetical protein AT 97.4 0.00012 4E-09 54.3 3.5 25 6-30 7-31 (191)
117 3lw7_A Adenylate kinase relate 97.4 9.3E-05 3.2E-09 53.8 2.9 20 9-28 2-21 (179)
118 3kb2_A SPBC2 prophage-derived 97.3 8.7E-05 3E-09 53.9 2.6 22 9-30 2-23 (173)
119 2qt1_A Nicotinamide riboside k 97.3 0.00017 5.8E-09 54.2 4.3 29 2-30 15-43 (207)
120 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.8E-09 53.8 3.1 23 8-30 2-24 (181)
121 1knq_A Gluconate kinase; ALFA/ 97.3 0.00016 5.6E-09 52.7 4.0 26 5-30 5-30 (175)
122 3tui_C Methionine import ATP-b 97.3 0.00093 3.2E-08 54.6 8.6 24 7-30 53-76 (366)
123 2ewv_A Twitching motility prot 97.3 0.00043 1.5E-08 57.0 6.3 111 7-134 135-246 (372)
124 3uie_A Adenylyl-sulfate kinase 97.3 0.00018 6.2E-09 53.8 3.7 26 6-31 23-48 (200)
125 3lda_A DNA repair protein RAD5 97.3 0.00071 2.4E-08 56.2 7.5 47 6-52 176-226 (400)
126 3tau_A Guanylate kinase, GMP k 97.3 0.00016 5.5E-09 54.5 3.3 24 7-30 7-30 (208)
127 3vaa_A Shikimate kinase, SK; s 97.3 0.00016 5.3E-09 54.1 3.2 24 7-30 24-47 (199)
128 3ice_A Transcription terminati 97.3 0.00016 5.4E-09 59.2 3.3 42 8-49 174-215 (422)
129 2rhm_A Putative kinase; P-loop 97.2 0.00016 5.4E-09 53.6 3.1 24 7-30 4-27 (193)
130 3trf_A Shikimate kinase, SK; a 97.2 0.00014 4.7E-09 53.6 2.7 23 8-30 5-27 (185)
131 4akg_A Glutathione S-transfera 97.2 0.0026 9E-08 64.3 12.2 140 8-166 1267-1432(2695)
132 3zvl_A Bifunctional polynucleo 97.2 0.00098 3.4E-08 55.8 8.1 25 6-30 256-280 (416)
133 3a00_A Guanylate kinase, GMP k 97.2 0.00017 5.6E-09 53.4 3.0 22 9-30 2-23 (186)
134 1kag_A SKI, shikimate kinase I 97.2 0.00013 4.5E-09 53.1 2.4 22 9-30 5-26 (173)
135 4gp7_A Metallophosphoesterase; 97.2 0.00019 6.5E-09 52.3 3.1 24 7-30 8-31 (171)
136 3tr0_A Guanylate kinase, GMP k 97.2 0.0002 6.9E-09 53.6 3.3 23 8-30 7-29 (205)
137 1vma_A Cell division protein F 97.2 0.0023 7.7E-08 51.2 9.5 40 6-47 102-141 (306)
138 4eun_A Thermoresistant glucoki 97.2 0.0002 6.9E-09 53.5 3.2 24 7-30 28-51 (200)
139 1nks_A Adenylate kinase; therm 97.2 0.00017 5.9E-09 53.3 2.8 23 9-31 2-24 (194)
140 3umf_A Adenylate kinase; rossm 97.2 0.00025 8.5E-09 53.7 3.6 25 6-30 27-51 (217)
141 3c8u_A Fructokinase; YP_612366 97.2 0.00027 9.4E-09 53.2 3.9 25 6-30 20-44 (208)
142 2px0_A Flagellar biosynthesis 97.2 0.0034 1.2E-07 49.9 10.3 41 7-48 104-144 (296)
143 3t61_A Gluconokinase; PSI-biol 97.2 0.00019 6.3E-09 53.8 2.8 23 8-30 18-40 (202)
144 3cmu_A Protein RECA, recombina 97.2 0.0007 2.4E-08 66.3 7.3 90 6-104 1425-1515(2050)
145 2qor_A Guanylate kinase; phosp 97.2 0.00019 6.5E-09 53.9 2.7 24 7-30 11-34 (204)
146 1kht_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 53.0 2.7 22 9-30 4-25 (192)
147 1y63_A LMAJ004144AAA protein; 97.1 0.00025 8.6E-09 52.3 3.2 24 7-30 9-32 (184)
148 1ukz_A Uridylate kinase; trans 97.1 0.00028 9.7E-09 52.8 3.5 26 5-30 12-37 (203)
149 2j41_A Guanylate kinase; GMP, 97.1 0.00027 9.4E-09 52.9 3.3 24 8-31 6-29 (207)
150 1gvn_B Zeta; postsegregational 97.1 0.00029 9.8E-09 55.9 3.5 25 6-30 31-55 (287)
151 3iij_A Coilin-interacting nucl 97.1 0.00022 7.4E-09 52.3 2.6 23 8-30 11-33 (180)
152 3ney_A 55 kDa erythrocyte memb 97.1 0.00028 9.6E-09 52.5 3.2 24 7-30 18-41 (197)
153 2wwf_A Thymidilate kinase, put 97.1 0.00029 1E-08 53.0 3.4 26 6-31 8-33 (212)
154 3llm_A ATP-dependent RNA helic 97.1 0.0012 4.2E-08 50.6 6.9 23 8-30 76-98 (235)
155 2ze6_A Isopentenyl transferase 97.1 0.00027 9.4E-09 55.0 3.2 22 9-30 2-23 (253)
156 1tev_A UMP-CMP kinase; ploop, 97.1 0.00026 8.9E-09 52.4 3.0 23 8-30 3-25 (196)
157 2bdt_A BH3686; alpha-beta prot 97.1 0.0003 1E-08 52.0 3.3 22 9-30 3-24 (189)
158 1lvg_A Guanylate kinase, GMP k 97.1 0.00022 7.5E-09 53.3 2.4 23 8-30 4-26 (198)
159 3asz_A Uridine kinase; cytidin 97.1 0.00032 1.1E-08 52.8 3.3 25 6-30 4-28 (211)
160 2c95_A Adenylate kinase 1; tra 97.1 0.00027 9.2E-09 52.5 2.8 24 7-30 8-31 (196)
161 2yvu_A Probable adenylyl-sulfa 97.1 0.00046 1.6E-08 50.9 4.0 26 6-31 11-36 (186)
162 1qf9_A UMP/CMP kinase, protein 97.1 0.00034 1.2E-08 51.7 3.3 24 7-30 5-28 (194)
163 2cdn_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 52.3 3.2 25 6-30 18-42 (201)
164 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.0033 1.1E-07 50.8 9.2 107 8-134 171-277 (330)
165 2iyv_A Shikimate kinase, SK; t 97.0 0.0002 6.8E-09 52.7 1.8 22 9-30 3-24 (184)
166 3cm0_A Adenylate kinase; ATP-b 97.0 0.00037 1.3E-08 51.3 3.3 23 8-30 4-26 (186)
167 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00037 1.3E-08 54.5 3.4 24 7-30 3-26 (260)
168 1uf9_A TT1252 protein; P-loop, 97.0 0.00033 1.1E-08 52.3 3.1 26 5-30 5-30 (203)
169 2plr_A DTMP kinase, probable t 97.0 0.00033 1.1E-08 52.7 3.1 24 8-31 4-27 (213)
170 1via_A Shikimate kinase; struc 97.0 0.00026 8.9E-09 51.7 2.4 22 9-30 5-26 (175)
171 1q57_A DNA primase/helicase; d 97.0 0.0019 6.5E-08 55.4 8.1 51 6-59 240-290 (503)
172 1s96_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 52.9 3.2 24 7-30 15-38 (219)
173 1sky_E F1-ATPase, F1-ATP synth 97.0 0.00088 3E-08 56.4 5.6 40 9-49 152-191 (473)
174 1jjv_A Dephospho-COA kinase; P 97.0 0.00043 1.5E-08 51.9 3.4 22 9-30 3-24 (206)
175 2vli_A Antibiotic resistance p 97.0 0.00024 8.2E-09 52.1 1.9 24 7-30 4-27 (183)
176 1znw_A Guanylate kinase, GMP k 97.0 0.00041 1.4E-08 52.1 3.2 24 7-30 19-42 (207)
177 2bwj_A Adenylate kinase 5; pho 97.0 0.00032 1.1E-08 52.2 2.6 23 8-30 12-34 (199)
178 1tue_A Replication protein E1; 97.0 0.00027 9.2E-09 52.7 2.1 24 7-30 57-80 (212)
179 1e6c_A Shikimate kinase; phosp 97.0 0.00028 9.6E-09 51.3 2.1 22 9-30 3-24 (173)
180 2pez_A Bifunctional 3'-phospho 97.0 0.0005 1.7E-08 50.3 3.4 25 6-30 3-27 (179)
181 1zuh_A Shikimate kinase; alpha 97.0 0.00038 1.3E-08 50.4 2.6 24 7-30 6-29 (168)
182 1aky_A Adenylate kinase; ATP:A 97.0 0.0004 1.4E-08 52.7 2.8 24 7-30 3-26 (220)
183 1z6g_A Guanylate kinase; struc 97.0 0.00037 1.3E-08 52.9 2.6 24 7-30 22-45 (218)
184 2bbw_A Adenylate kinase 4, AK4 97.0 0.00045 1.5E-08 53.4 3.2 23 8-30 27-49 (246)
185 1rz3_A Hypothetical protein rb 96.9 0.00054 1.8E-08 51.3 3.5 25 6-30 20-44 (201)
186 1odf_A YGR205W, hypothetical 3 96.9 0.00061 2.1E-08 54.0 3.9 27 5-31 28-54 (290)
187 1cke_A CK, MSSA, protein (cyti 96.9 0.00049 1.7E-08 52.4 3.3 23 8-30 5-27 (227)
188 1htw_A HI0065; nucleotide-bind 96.9 0.00064 2.2E-08 48.8 3.6 25 6-30 31-55 (158)
189 3tlx_A Adenylate kinase 2; str 96.9 0.00051 1.7E-08 53.1 3.2 24 7-30 28-51 (243)
190 2jaq_A Deoxyguanosine kinase; 96.9 0.00042 1.4E-08 51.7 2.7 21 10-30 2-22 (205)
191 1nn5_A Similar to deoxythymidy 96.9 0.00044 1.5E-08 52.1 2.8 24 8-31 9-32 (215)
192 2dr3_A UPF0273 protein PH0284; 96.9 0.00052 1.8E-08 52.8 3.3 41 6-48 21-61 (247)
193 3ozx_A RNAse L inhibitor; ATP 96.9 0.0089 3.1E-07 51.6 11.2 25 6-30 23-47 (538)
194 1xjc_A MOBB protein homolog; s 96.9 0.00054 1.8E-08 49.6 3.1 25 7-31 3-27 (169)
195 1uj2_A Uridine-cytidine kinase 96.9 0.0005 1.7E-08 53.4 3.1 24 7-30 21-44 (252)
196 2jeo_A Uridine-cytidine kinase 96.9 0.00064 2.2E-08 52.6 3.6 24 7-30 24-47 (245)
197 4a1f_A DNAB helicase, replicat 96.9 0.0013 4.4E-08 53.3 5.4 51 6-60 44-94 (338)
198 3fb4_A Adenylate kinase; psych 96.9 0.00047 1.6E-08 52.1 2.7 21 10-30 2-22 (216)
199 2pt5_A Shikimate kinase, SK; a 96.9 0.00049 1.7E-08 49.7 2.7 21 10-30 2-22 (168)
200 2if2_A Dephospho-COA kinase; a 96.9 0.00052 1.8E-08 51.3 2.9 22 9-30 2-23 (204)
201 2z0h_A DTMP kinase, thymidylat 96.9 0.0012 4E-08 49.0 4.8 22 10-31 2-23 (197)
202 2pbr_A DTMP kinase, thymidylat 96.9 0.00049 1.7E-08 50.9 2.7 21 10-30 2-22 (195)
203 1zd8_A GTP:AMP phosphotransfer 96.9 0.00053 1.8E-08 52.3 2.9 24 7-30 6-29 (227)
204 2v54_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 51.1 3.0 24 8-31 4-27 (204)
205 2p5t_B PEZT; postsegregational 96.9 0.0005 1.7E-08 53.5 2.7 25 6-30 30-54 (253)
206 3be4_A Adenylate kinase; malar 96.9 0.00047 1.6E-08 52.2 2.5 24 7-30 4-27 (217)
207 2ck3_D ATP synthase subunit be 96.8 0.0025 8.4E-08 53.7 6.9 52 8-60 153-205 (482)
208 2ehv_A Hypothetical protein PH 96.8 0.00057 1.9E-08 52.8 2.9 25 6-30 28-52 (251)
209 3dl0_A Adenylate kinase; phosp 96.8 0.00053 1.8E-08 51.8 2.7 21 10-30 2-22 (216)
210 4a74_A DNA repair and recombin 96.8 0.00062 2.1E-08 51.8 3.1 44 6-49 23-70 (231)
211 1zak_A Adenylate kinase; ATP:A 96.8 0.00044 1.5E-08 52.5 2.3 24 7-30 4-27 (222)
212 2r6a_A DNAB helicase, replicat 96.8 0.0047 1.6E-07 52.3 8.8 42 6-48 201-242 (454)
213 3lnc_A Guanylate kinase, GMP k 96.8 0.00041 1.4E-08 53.1 2.0 23 8-30 27-50 (231)
214 3aez_A Pantothenate kinase; tr 96.8 0.00073 2.5E-08 54.2 3.6 26 5-30 87-112 (312)
215 2f6r_A COA synthase, bifunctio 96.8 0.00078 2.7E-08 53.2 3.6 25 6-30 73-97 (281)
216 2grj_A Dephospho-COA kinase; T 96.8 0.00068 2.3E-08 50.3 3.0 24 7-30 11-34 (192)
217 3tqc_A Pantothenate kinase; bi 96.8 0.00088 3E-08 53.8 3.8 25 6-30 90-114 (321)
218 4e22_A Cytidylate kinase; P-lo 96.8 0.00078 2.7E-08 52.3 3.3 23 8-30 27-49 (252)
219 1j8m_F SRP54, signal recogniti 96.8 0.0055 1.9E-07 48.7 8.3 39 8-48 98-136 (297)
220 2qmh_A HPR kinase/phosphorylas 96.8 0.00089 3E-08 49.6 3.2 24 8-31 34-57 (205)
221 2r8r_A Sensor protein; KDPD, P 96.8 0.0021 7E-08 48.7 5.3 41 7-49 5-45 (228)
222 1m7g_A Adenylylsulfate kinase; 96.8 0.00099 3.4E-08 50.2 3.6 25 7-31 24-48 (211)
223 1a7j_A Phosphoribulokinase; tr 96.7 0.00042 1.4E-08 55.0 1.6 24 7-30 4-27 (290)
224 3b5x_A Lipid A export ATP-bind 96.7 0.017 5.7E-07 50.5 11.8 24 7-30 368-391 (582)
225 3tif_A Uncharacterized ABC tra 96.7 0.00091 3.1E-08 51.4 3.3 24 7-30 30-53 (235)
226 1rj9_A FTSY, signal recognitio 96.7 0.00095 3.3E-08 53.3 3.5 24 7-30 101-124 (304)
227 1np6_A Molybdopterin-guanine d 96.7 0.00095 3.2E-08 48.7 3.2 26 6-31 4-29 (174)
228 1vht_A Dephospho-COA kinase; s 96.7 0.001 3.6E-08 50.3 3.6 23 8-30 4-26 (218)
229 2q6t_A DNAB replication FORK h 96.7 0.0084 2.9E-07 50.6 9.4 54 6-62 198-251 (444)
230 2xxa_A Signal recognition part 96.7 0.012 4E-07 49.4 10.0 26 6-31 98-123 (433)
231 1tf7_A KAIC; homohexamer, hexa 96.7 0.004 1.4E-07 53.8 7.4 40 7-48 280-319 (525)
232 1sq5_A Pantothenate kinase; P- 96.7 0.0012 4.1E-08 52.9 3.7 25 6-30 78-102 (308)
233 3cmu_A Protein RECA, recombina 96.7 0.0025 8.4E-08 62.6 6.4 90 6-104 381-471 (2050)
234 3j16_B RLI1P; ribosome recycli 96.7 0.046 1.6E-06 47.9 13.9 25 6-30 101-125 (608)
235 1fx0_B ATP synthase beta chain 96.7 0.004 1.4E-07 52.6 6.8 51 9-60 166-217 (498)
236 3qf4_A ABC transporter, ATP-bi 96.7 0.012 3.9E-07 51.6 10.1 24 7-30 368-391 (587)
237 3crm_A TRNA delta(2)-isopenten 96.7 0.001 3.6E-08 53.3 3.2 23 8-30 5-27 (323)
238 4eaq_A DTMP kinase, thymidylat 96.7 0.0025 8.6E-08 48.7 5.3 26 6-31 24-49 (229)
239 2onk_A Molybdate/tungstate ABC 96.7 0.0011 3.6E-08 51.1 3.2 22 9-30 25-46 (240)
240 3j16_B RLI1P; ribosome recycli 96.7 0.013 4.5E-07 51.3 10.3 23 9-31 379-401 (608)
241 1yqt_A RNAse L inhibitor; ATP- 96.6 0.02 6.9E-07 49.5 11.4 132 7-138 311-468 (538)
242 2pcj_A ABC transporter, lipopr 96.6 0.00094 3.2E-08 50.9 2.8 23 8-30 30-52 (224)
243 1gtv_A TMK, thymidylate kinase 96.6 0.00047 1.6E-08 51.9 1.1 22 10-31 2-23 (214)
244 3cmw_A Protein RECA, recombina 96.6 0.0022 7.4E-08 62.2 5.8 91 6-105 381-472 (1706)
245 3a8t_A Adenylate isopentenyltr 96.6 0.0013 4.5E-08 53.0 3.7 24 8-31 40-63 (339)
246 1ls1_A Signal recognition part 96.6 0.0047 1.6E-07 49.1 6.9 25 7-31 97-121 (295)
247 2cbz_A Multidrug resistance-as 96.6 0.0012 4E-08 50.8 3.3 25 7-31 30-54 (237)
248 3foz_A TRNA delta(2)-isopenten 96.6 0.0012 4E-08 52.5 3.3 25 6-30 8-32 (316)
249 1ak2_A Adenylate kinase isoenz 96.6 0.0011 3.6E-08 50.9 3.0 24 7-30 15-38 (233)
250 2j9r_A Thymidine kinase; TK1, 96.6 0.0054 1.8E-07 46.0 6.6 110 6-131 26-137 (214)
251 2xb4_A Adenylate kinase; ATP-b 96.6 0.00099 3.4E-08 50.7 2.7 21 10-30 2-22 (223)
252 1e4v_A Adenylate kinase; trans 96.6 0.00095 3.3E-08 50.4 2.6 21 10-30 2-22 (214)
253 3exa_A TRNA delta(2)-isopenten 96.6 0.0012 3.9E-08 52.7 3.1 24 8-31 3-26 (322)
254 1b0u_A Histidine permease; ABC 96.6 0.0013 4.3E-08 51.5 3.3 24 7-30 31-54 (262)
255 1pzn_A RAD51, DNA repair and r 96.6 0.0015 5E-08 53.3 3.8 44 6-49 129-176 (349)
256 3hws_A ATP-dependent CLP prote 96.6 0.00088 3E-08 55.0 2.5 25 7-31 50-74 (363)
257 3b85_A Phosphate starvation-in 96.6 0.00099 3.4E-08 50.1 2.5 23 8-30 22-44 (208)
258 1ltq_A Polynucleotide kinase; 96.6 0.0013 4.4E-08 52.4 3.3 22 9-30 3-24 (301)
259 1q3t_A Cytidylate kinase; nucl 96.6 0.0014 4.7E-08 50.3 3.3 26 5-30 13-38 (236)
260 1mv5_A LMRA, multidrug resista 96.6 0.0015 5.3E-08 50.3 3.5 24 7-30 27-50 (243)
261 3e70_C DPA, signal recognition 96.6 0.002 7E-08 52.0 4.3 25 6-30 127-151 (328)
262 2i3b_A HCR-ntpase, human cance 96.5 0.0011 3.6E-08 49.1 2.5 22 10-31 3-24 (189)
263 2hf9_A Probable hydrogenase ni 96.5 0.0015 5.2E-08 49.5 3.5 25 7-31 37-61 (226)
264 1um8_A ATP-dependent CLP prote 96.5 0.00098 3.3E-08 55.0 2.5 23 8-30 72-94 (376)
265 2qi9_C Vitamin B12 import ATP- 96.5 0.0021 7E-08 49.8 4.2 23 8-30 26-48 (249)
266 3r20_A Cytidylate kinase; stru 96.5 0.0014 4.6E-08 50.2 3.1 23 8-30 9-31 (233)
267 2olj_A Amino acid ABC transpor 96.5 0.0014 4.9E-08 51.1 3.3 24 7-30 49-72 (263)
268 2ffh_A Protein (FFH); SRP54, s 96.5 0.0046 1.6E-07 51.6 6.5 25 7-31 97-121 (425)
269 3ake_A Cytidylate kinase; CMP 96.5 0.0012 4E-08 49.4 2.7 22 9-30 3-24 (208)
270 4a82_A Cystic fibrosis transme 96.5 0.013 4.3E-07 51.3 9.5 24 7-30 366-389 (578)
271 3gfo_A Cobalt import ATP-bindi 96.5 0.0013 4.5E-08 51.7 3.0 23 8-30 34-56 (275)
272 3nwj_A ATSK2; P loop, shikimat 96.5 0.0011 3.9E-08 51.3 2.6 23 8-30 48-70 (250)
273 3d3q_A TRNA delta(2)-isopenten 96.5 0.0014 4.9E-08 52.9 3.3 22 9-30 8-29 (340)
274 3hjn_A DTMP kinase, thymidylat 96.5 0.0037 1.3E-07 46.5 5.4 22 10-31 2-23 (197)
275 2zts_A Putative uncharacterize 96.5 0.0011 3.7E-08 51.1 2.5 42 6-48 28-69 (251)
276 1nlf_A Regulatory protein REPA 96.5 0.0012 4E-08 52.1 2.7 24 7-30 29-52 (279)
277 3bk7_A ABC transporter ATP-bin 96.5 0.038 1.3E-06 48.5 12.4 132 7-138 381-538 (607)
278 2zej_A Dardarin, leucine-rich 96.5 0.0014 4.6E-08 48.1 2.9 22 10-31 4-25 (184)
279 2f1r_A Molybdopterin-guanine d 96.5 0.00079 2.7E-08 49.0 1.5 23 8-30 2-24 (171)
280 2wji_A Ferrous iron transport 96.5 0.0018 6.1E-08 46.5 3.4 24 8-31 3-26 (165)
281 3thx_A DNA mismatch repair pro 96.5 0.017 5.8E-07 53.1 10.4 22 7-28 661-682 (934)
282 2v9p_A Replication protein E1; 96.5 0.0015 5.1E-08 52.1 3.2 24 7-30 125-148 (305)
283 1ji0_A ABC transporter; ATP bi 96.5 0.0014 4.8E-08 50.5 2.9 24 7-30 31-54 (240)
284 1u0j_A DNA replication protein 96.5 0.0013 4.6E-08 51.1 2.8 25 6-30 102-126 (267)
285 1g6h_A High-affinity branched- 96.5 0.0014 4.8E-08 51.0 2.9 24 7-30 32-55 (257)
286 2pze_A Cystic fibrosis transme 96.5 0.0014 4.9E-08 50.0 2.9 24 8-31 34-57 (229)
287 3b9q_A Chloroplast SRP recepto 96.5 0.0018 6.2E-08 51.6 3.6 25 6-30 98-122 (302)
288 1svm_A Large T antigen; AAA+ f 96.5 0.0016 5.5E-08 53.6 3.3 25 6-30 167-191 (377)
289 2ghi_A Transport protein; mult 96.5 0.0017 5.7E-08 50.7 3.3 24 7-30 45-68 (260)
290 1vpl_A ABC transporter, ATP-bi 96.5 0.0017 5.7E-08 50.5 3.3 24 7-30 40-63 (256)
291 2ff7_A Alpha-hemolysin translo 96.5 0.0015 5E-08 50.6 2.9 23 8-30 35-57 (247)
292 2ixe_A Antigen peptide transpo 96.5 0.0017 5.8E-08 51.0 3.3 24 7-30 44-67 (271)
293 3cmw_A Protein RECA, recombina 96.5 0.0032 1.1E-07 61.1 5.6 91 5-104 1428-1519(1706)
294 1cr0_A DNA primase/helicase; R 96.5 0.0016 5.5E-08 51.7 3.2 39 7-47 34-73 (296)
295 2zu0_C Probable ATP-dependent 96.5 0.0018 6E-08 50.8 3.3 24 7-30 45-68 (267)
296 1zu4_A FTSY; GTPase, signal re 96.4 0.0023 7.9E-08 51.5 4.0 26 6-31 103-128 (320)
297 1oix_A RAS-related protein RAB 96.4 0.002 6.7E-08 47.6 3.3 24 8-31 29-52 (191)
298 1w36_D RECD, exodeoxyribonucle 96.4 0.0054 1.9E-07 53.9 6.6 23 8-30 164-186 (608)
299 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0016 5.6E-08 50.4 3.0 24 7-30 28-51 (250)
300 2yz2_A Putative ABC transporte 96.4 0.0019 6.5E-08 50.5 3.3 24 7-30 32-55 (266)
301 4edh_A DTMP kinase, thymidylat 96.4 0.0052 1.8E-07 46.3 5.6 24 8-31 6-29 (213)
302 2iw3_A Elongation factor 3A; a 96.4 0.018 6.2E-07 53.0 10.0 24 7-30 460-483 (986)
303 2vp4_A Deoxynucleoside kinase; 96.4 0.0022 7.4E-08 49.0 3.5 25 6-30 18-42 (230)
304 2lkc_A Translation initiation 96.4 0.0033 1.1E-07 45.5 4.4 26 6-31 6-31 (178)
305 2wsm_A Hydrogenase expression/ 96.4 0.002 7E-08 48.6 3.3 25 7-31 29-53 (221)
306 2wjg_A FEOB, ferrous iron tran 96.4 0.0027 9.3E-08 46.4 3.9 25 7-31 6-30 (188)
307 2dyk_A GTP-binding protein; GT 96.4 0.0023 7.9E-08 45.4 3.3 23 9-31 2-24 (161)
308 2f9l_A RAB11B, member RAS onco 96.4 0.0018 6.2E-08 48.1 2.8 24 8-31 5-28 (199)
309 2ihy_A ABC transporter, ATP-bi 96.4 0.0019 6.6E-08 50.9 3.0 24 7-30 46-69 (279)
310 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0021 7.2E-08 52.4 3.2 24 7-30 29-52 (359)
311 3nbx_X ATPase RAVA; AAA+ ATPas 96.3 0.0017 5.9E-08 55.5 2.8 23 9-31 42-64 (500)
312 1fzq_A ADP-ribosylation factor 96.3 0.0034 1.2E-07 45.8 4.1 26 6-31 14-39 (181)
313 1g8p_A Magnesium-chelatase 38 96.3 0.00093 3.2E-08 54.3 1.1 22 10-31 47-68 (350)
314 3fwy_A Light-independent proto 96.3 0.0035 1.2E-07 50.3 4.4 41 6-48 46-86 (314)
315 3zq6_A Putative arsenical pump 96.3 0.0054 1.9E-07 49.4 5.4 28 3-30 8-36 (324)
316 3tqf_A HPR(Ser) kinase; transf 96.3 0.0024 8.1E-08 46.1 2.9 24 8-31 16-39 (181)
317 2j37_W Signal recognition part 96.3 0.06 2.1E-06 46.0 11.9 25 6-30 99-123 (504)
318 1nij_A Hypothetical protein YJ 96.3 0.002 6.8E-08 51.8 2.7 24 7-30 3-26 (318)
319 2og2_A Putative signal recogni 96.3 0.0028 9.7E-08 51.7 3.6 25 6-30 155-179 (359)
320 2xau_A PRE-mRNA-splicing facto 96.3 0.0076 2.6E-07 54.5 6.7 23 8-30 109-131 (773)
321 3l0o_A Transcription terminati 96.2 0.00077 2.6E-08 55.2 0.2 24 8-31 175-198 (427)
322 1yrb_A ATP(GTP)binding protein 96.2 0.0035 1.2E-07 48.7 4.0 27 5-31 11-37 (262)
323 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0034 1.1E-07 50.9 3.8 25 6-30 22-46 (359)
324 1p5z_B DCK, deoxycytidine kina 96.2 0.0022 7.6E-08 50.0 2.7 26 6-31 22-47 (263)
325 2nzj_A GTP-binding protein REM 96.2 0.0034 1.2E-07 45.2 3.5 24 8-31 4-27 (175)
326 2pjz_A Hypothetical protein ST 96.2 0.0026 8.9E-08 49.6 3.0 23 8-30 30-52 (263)
327 1svi_A GTP-binding protein YSX 96.2 0.0032 1.1E-07 46.3 3.5 26 6-31 21-46 (195)
328 2yyz_A Sugar ABC transporter, 96.2 0.0029 9.8E-08 51.7 3.3 24 7-30 28-51 (359)
329 2it1_A 362AA long hypothetical 96.2 0.0029 9.8E-08 51.7 3.3 24 7-30 28-51 (362)
330 2ged_A SR-beta, signal recogni 96.2 0.0032 1.1E-07 46.4 3.3 26 6-31 46-71 (193)
331 2bbs_A Cystic fibrosis transme 96.2 0.0028 9.7E-08 50.2 3.2 25 7-31 63-87 (290)
332 3sop_A Neuronal-specific septi 96.2 0.0025 8.7E-08 49.9 2.9 21 10-30 4-24 (270)
333 1z2a_A RAS-related protein RAB 96.2 0.0033 1.1E-07 44.9 3.3 25 7-31 4-28 (168)
334 3kta_A Chromosome segregation 96.2 0.0027 9.4E-08 46.4 2.9 22 9-30 27-48 (182)
335 1ky3_A GTP-binding protein YPT 96.2 0.0033 1.1E-07 45.6 3.3 27 5-31 5-31 (182)
336 3pqc_A Probable GTP-binding pr 96.2 0.0034 1.2E-07 46.1 3.4 26 6-31 21-46 (195)
337 3rlf_A Maltose/maltodextrin im 96.2 0.003 1E-07 51.9 3.3 24 7-30 28-51 (381)
338 1pui_A ENGB, probable GTP-bind 96.2 0.0024 8.2E-08 47.8 2.6 25 7-31 25-49 (210)
339 1nrj_B SR-beta, signal recogni 96.2 0.0033 1.1E-07 47.3 3.3 26 6-31 10-35 (218)
340 1z47_A CYSA, putative ABC-tran 96.2 0.0027 9.1E-08 51.8 3.0 24 7-30 40-63 (355)
341 1v43_A Sugar-binding transport 96.1 0.0031 1.1E-07 51.7 3.3 24 7-30 36-59 (372)
342 3nh6_A ATP-binding cassette SU 96.1 0.0025 8.5E-08 50.9 2.6 24 7-30 79-102 (306)
343 2fn4_A P23, RAS-related protei 96.1 0.0042 1.4E-07 44.9 3.7 27 5-31 6-32 (181)
344 4f4c_A Multidrug resistance pr 96.1 0.032 1.1E-06 53.5 10.6 24 7-30 443-466 (1321)
345 2ocp_A DGK, deoxyguanosine kin 96.1 0.0029 1E-07 48.6 3.0 24 8-31 2-25 (241)
346 3p32_A Probable GTPase RV1496/ 96.1 0.0037 1.3E-07 51.1 3.7 26 5-30 76-101 (355)
347 3oaa_A ATP synthase subunit al 96.1 0.0071 2.4E-07 51.1 5.3 46 10-58 164-211 (513)
348 2ce2_X GTPase HRAS; signaling 96.1 0.0029 9.8E-08 45.0 2.7 22 10-31 5-26 (166)
349 3q72_A GTP-binding protein RAD 96.1 0.0029 9.9E-08 45.2 2.7 22 10-31 4-25 (166)
350 3d31_A Sulfate/molybdate ABC t 96.1 0.0026 9E-08 51.7 2.6 24 7-30 25-48 (348)
351 3q85_A GTP-binding protein REM 96.1 0.0033 1.1E-07 45.0 2.9 22 9-30 3-24 (169)
352 1g41_A Heat shock protein HSLU 96.1 0.0027 9.3E-08 53.2 2.7 23 8-30 50-72 (444)
353 3tw8_B RAS-related protein RAB 96.1 0.0037 1.3E-07 45.3 3.2 27 5-31 6-32 (181)
354 4bas_A ADP-ribosylation factor 96.1 0.0039 1.3E-07 46.0 3.3 27 5-31 14-40 (199)
355 2yhs_A FTSY, cell division pro 96.1 0.0038 1.3E-07 53.0 3.6 25 6-30 291-315 (503)
356 1g29_1 MALK, maltose transport 96.1 0.003 1E-07 51.8 3.0 24 7-30 28-51 (372)
357 3eph_A TRNA isopentenyltransfe 96.1 0.0036 1.2E-07 51.7 3.3 23 8-30 2-24 (409)
358 3lv8_A DTMP kinase, thymidylat 96.1 0.0068 2.3E-07 46.4 4.7 24 8-31 27-50 (236)
359 3vr4_D V-type sodium ATPase su 96.1 0.0064 2.2E-07 50.9 4.8 49 11-59 154-205 (465)
360 2qm8_A GTPase/ATPase; G protei 96.1 0.0041 1.4E-07 50.5 3.6 25 6-30 53-77 (337)
361 2www_A Methylmalonic aciduria 96.1 0.0041 1.4E-07 50.7 3.6 24 7-30 73-96 (349)
362 2erx_A GTP-binding protein DI- 96.1 0.0035 1.2E-07 44.9 2.9 23 9-31 4-26 (172)
363 4f4c_A Multidrug resistance pr 96.1 0.017 5.9E-07 55.3 8.3 23 8-30 1105-1127(1321)
364 3ld9_A DTMP kinase, thymidylat 96.1 0.007 2.4E-07 45.9 4.6 26 6-31 19-44 (223)
365 1fx0_A ATP synthase alpha chai 96.0 0.0037 1.3E-07 52.9 3.3 90 9-104 164-265 (507)
366 1p9r_A General secretion pathw 96.0 0.0053 1.8E-07 51.2 4.3 24 7-30 166-189 (418)
367 2qe7_A ATP synthase subunit al 96.0 0.011 3.8E-07 50.0 6.2 47 9-59 163-212 (502)
368 2gj8_A MNME, tRNA modification 96.0 0.0043 1.5E-07 44.9 3.3 24 8-31 4-27 (172)
369 3iqw_A Tail-anchored protein t 96.0 0.0067 2.3E-07 49.1 4.7 41 6-48 14-54 (334)
370 3io3_A DEHA2D07832P; chaperone 96.0 0.0072 2.5E-07 49.2 4.9 26 5-30 15-40 (348)
371 3thx_B DNA mismatch repair pro 96.0 0.022 7.7E-07 52.2 8.5 23 7-29 672-694 (918)
372 1vg8_A RAS-related protein RAB 96.0 0.0042 1.5E-07 46.2 3.3 28 4-31 4-31 (207)
373 2fz4_A DNA repair protein RAD2 96.0 0.034 1.2E-06 42.5 8.5 20 11-30 111-130 (237)
374 1c9k_A COBU, adenosylcobinamid 96.0 0.0032 1.1E-07 46.0 2.4 33 10-48 1-33 (180)
375 1kao_A RAP2A; GTP-binding prot 96.0 0.0037 1.3E-07 44.5 2.8 23 9-31 4-26 (167)
376 1u8z_A RAS-related protein RAL 96.0 0.0038 1.3E-07 44.5 2.8 24 8-31 4-27 (168)
377 2cxx_A Probable GTP-binding pr 96.0 0.0036 1.2E-07 45.8 2.7 22 10-31 3-24 (190)
378 2qu8_A Putative nucleolar GTP- 96.0 0.0054 1.9E-07 46.6 3.8 26 6-31 27-52 (228)
379 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0043 1.5E-07 44.8 3.1 26 6-31 5-30 (177)
380 4tmk_A Protein (thymidylate ki 96.0 0.0087 3E-07 45.1 4.8 24 8-31 3-26 (213)
381 2hxs_A RAB-26, RAS-related pro 96.0 0.0059 2E-07 44.1 3.8 26 6-31 4-29 (178)
382 3v9p_A DTMP kinase, thymidylat 96.0 0.0058 2E-07 46.5 3.8 24 8-31 25-48 (227)
383 1oxx_K GLCV, glucose, ABC tran 96.0 0.0025 8.7E-08 51.9 2.0 24 7-30 30-53 (353)
384 1ek0_A Protein (GTP-binding pr 96.0 0.0039 1.4E-07 44.5 2.8 22 10-31 5-26 (170)
385 2r9v_A ATP synthase subunit al 96.0 0.011 3.8E-07 50.1 5.8 48 9-60 176-226 (515)
386 1c1y_A RAS-related protein RAP 96.0 0.004 1.4E-07 44.4 2.8 23 9-31 4-26 (167)
387 3gd7_A Fusion complex of cysti 96.0 0.0042 1.4E-07 51.3 3.2 24 7-30 46-69 (390)
388 3bgw_A DNAB-like replicative h 95.9 0.0034 1.1E-07 53.0 2.7 42 6-49 195-236 (444)
389 3end_A Light-independent proto 95.9 0.0063 2.1E-07 48.6 4.2 41 6-48 39-79 (307)
390 1r8s_A ADP-ribosylation factor 95.9 0.0041 1.4E-07 44.3 2.8 21 11-31 3-23 (164)
391 3con_A GTPase NRAS; structural 95.9 0.004 1.4E-07 45.6 2.8 23 9-31 22-44 (190)
392 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0048 1.6E-07 45.1 3.2 26 6-31 5-30 (184)
393 3mfy_A V-type ATP synthase alp 95.9 0.008 2.7E-07 51.4 4.8 47 8-58 227-274 (588)
394 3ihw_A Centg3; RAS, centaurin, 95.9 0.0041 1.4E-07 45.6 2.8 24 8-31 20-43 (184)
395 1upt_A ARL1, ADP-ribosylation 95.9 0.0059 2E-07 43.7 3.6 25 7-31 6-30 (171)
396 3b1v_A Ferrous iron uptake tra 95.9 0.0075 2.6E-07 47.3 4.4 24 8-31 3-26 (272)
397 1f6b_A SAR1; gtpases, N-termin 95.9 0.0048 1.6E-07 45.8 3.2 25 7-31 24-48 (198)
398 1z0j_A RAB-22, RAS-related pro 95.9 0.0043 1.5E-07 44.4 2.8 24 8-31 6-29 (170)
399 2bme_A RAB4A, RAS-related prot 95.9 0.0057 2E-07 44.5 3.5 26 6-31 8-33 (186)
400 2cjw_A GTP-binding protein GEM 95.9 0.0043 1.5E-07 45.8 2.8 23 8-30 6-28 (192)
401 3cbq_A GTP-binding protein REM 95.9 0.005 1.7E-07 45.6 3.1 24 7-30 22-45 (195)
402 1z08_A RAS-related protein RAB 95.9 0.0051 1.7E-07 44.0 3.1 25 7-31 5-29 (170)
403 1lw7_A Transcriptional regulat 95.9 0.0047 1.6E-07 50.7 3.2 23 8-30 170-192 (365)
404 3c5c_A RAS-like protein 12; GD 95.8 0.0047 1.6E-07 45.3 2.8 25 7-31 20-44 (187)
405 1moz_A ARL1, ADP-ribosylation 95.8 0.0048 1.7E-07 44.8 2.9 26 6-31 16-41 (183)
406 1r2q_A RAS-related protein RAB 95.8 0.0048 1.7E-07 44.1 2.8 24 8-31 6-29 (170)
407 3gqb_B V-type ATP synthase bet 95.8 0.0077 2.6E-07 50.4 4.3 22 10-31 149-170 (464)
408 3bc1_A RAS-related protein RAB 95.8 0.0062 2.1E-07 44.6 3.5 25 7-31 10-34 (195)
409 1z0f_A RAB14, member RAS oncog 95.8 0.0061 2.1E-07 44.0 3.3 25 7-31 14-38 (179)
410 2gza_A Type IV secretion syste 95.8 0.0068 2.3E-07 49.6 3.9 35 8-45 175-209 (361)
411 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0068 2.3E-07 42.9 3.4 23 8-30 23-45 (149)
412 2axn_A 6-phosphofructo-2-kinas 95.8 0.0057 2E-07 52.6 3.6 25 6-30 33-57 (520)
413 3kkq_A RAS-related protein M-R 95.8 0.0073 2.5E-07 43.9 3.7 25 7-31 17-41 (183)
414 3t5g_A GTP-binding protein RHE 95.8 0.0051 1.8E-07 44.6 2.8 25 7-31 5-29 (181)
415 1g16_A RAS-related protein SEC 95.8 0.0062 2.1E-07 43.5 3.2 23 9-31 4-26 (170)
416 2y8e_A RAB-protein 6, GH09086P 95.8 0.005 1.7E-07 44.5 2.7 23 9-31 15-37 (179)
417 2oil_A CATX-8, RAS-related pro 95.8 0.0069 2.3E-07 44.5 3.5 24 8-31 25-48 (193)
418 1ksh_A ARF-like protein 2; sma 95.8 0.0073 2.5E-07 44.0 3.6 26 6-31 16-41 (186)
419 2fh5_B SR-beta, signal recogni 95.7 0.0057 2E-07 45.8 3.0 26 6-31 5-30 (214)
420 3k1j_A LON protease, ATP-depen 95.7 0.0091 3.1E-07 52.5 4.7 23 9-31 61-83 (604)
421 2h92_A Cytidylate kinase; ross 95.7 0.0041 1.4E-07 46.9 2.1 22 9-30 4-25 (219)
422 2iwr_A Centaurin gamma 1; ANK 95.7 0.0039 1.3E-07 45.1 2.0 24 8-31 7-30 (178)
423 2g3y_A GTP-binding protein GEM 95.7 0.0071 2.4E-07 45.5 3.4 23 8-30 37-59 (211)
424 2b6h_A ADP-ribosylation factor 95.7 0.0077 2.6E-07 44.4 3.6 25 7-31 28-52 (192)
425 1zbd_A Rabphilin-3A; G protein 95.7 0.0058 2E-07 45.3 2.9 24 8-31 8-31 (203)
426 2efe_B Small GTP-binding prote 95.7 0.0056 1.9E-07 44.3 2.8 24 8-31 12-35 (181)
427 1m2o_B GTP-binding protein SAR 95.7 0.0058 2E-07 45.0 2.9 24 8-31 23-46 (190)
428 2bov_A RAla, RAS-related prote 95.7 0.0076 2.6E-07 44.7 3.6 25 7-31 13-37 (206)
429 3lxx_A GTPase IMAP family memb 95.7 0.0069 2.4E-07 46.4 3.4 26 6-31 27-52 (239)
430 2a9k_A RAS-related protein RAL 95.7 0.0071 2.4E-07 44.0 3.3 24 8-31 18-41 (187)
431 2ck3_A ATP synthase subunit al 95.7 0.012 4.1E-07 49.9 5.0 51 9-59 163-220 (510)
432 4dsu_A GTPase KRAS, isoform 2B 95.7 0.0058 2E-07 44.6 2.8 24 8-31 4-27 (189)
433 3ug7_A Arsenical pump-driving 95.7 0.012 4.1E-07 47.9 4.9 26 5-30 23-48 (349)
434 1zj6_A ADP-ribosylation factor 95.7 0.0085 2.9E-07 43.8 3.7 25 7-31 15-39 (187)
435 3bwd_D RAC-like GTP-binding pr 95.7 0.006 2E-07 44.2 2.8 24 8-31 8-31 (182)
436 3g5u_A MCG1178, multidrug resi 95.7 0.055 1.9E-06 51.8 10.0 24 7-30 415-438 (1284)
437 4dkx_A RAS-related protein RAB 95.7 0.0059 2E-07 46.1 2.8 22 10-31 15-36 (216)
438 2v3c_C SRP54, signal recogniti 95.7 0.0044 1.5E-07 52.0 2.3 25 7-31 98-122 (432)
439 1gwn_A RHO-related GTP-binding 95.7 0.007 2.4E-07 45.2 3.2 25 7-31 27-51 (205)
440 3a1s_A Iron(II) transport prot 95.7 0.0061 2.1E-07 47.4 3.0 25 7-31 4-28 (258)
441 1x6v_B Bifunctional 3'-phospho 95.7 0.0069 2.4E-07 53.1 3.5 24 7-30 51-74 (630)
442 2g6b_A RAS-related protein RAB 95.7 0.0081 2.8E-07 43.4 3.5 26 6-31 8-33 (180)
443 2atv_A RERG, RAS-like estrogen 95.7 0.0061 2.1E-07 45.0 2.8 24 8-31 28-51 (196)
444 1cp2_A CP2, nitrogenase iron p 95.7 0.009 3.1E-07 46.6 3.9 38 9-48 2-39 (269)
445 3clv_A RAB5 protein, putative; 95.6 0.0093 3.2E-07 44.0 3.8 25 7-31 6-30 (208)
446 2q3h_A RAS homolog gene family 95.6 0.0066 2.3E-07 44.9 2.9 25 7-31 19-43 (201)
447 2il1_A RAB12; G-protein, GDP, 95.6 0.0064 2.2E-07 44.8 2.8 24 8-31 26-49 (192)
448 3cr8_A Sulfate adenylyltranfer 95.6 0.0052 1.8E-07 53.1 2.6 24 7-30 368-391 (552)
449 1ega_A Protein (GTP-binding pr 95.6 0.0065 2.2E-07 48.4 3.0 25 7-31 7-31 (301)
450 1zd9_A ADP-ribosylation factor 95.6 0.0065 2.2E-07 44.5 2.8 24 8-31 22-45 (188)
451 1z06_A RAS-related protein RAB 95.6 0.008 2.7E-07 44.0 3.3 25 7-31 19-43 (189)
452 3vkg_A Dynein heavy chain, cyt 95.6 0.022 7.4E-07 58.6 7.2 49 8-60 1304-1352(3245)
453 3dz8_A RAS-related protein RAB 95.6 0.0062 2.1E-07 44.7 2.7 23 9-31 24-46 (191)
454 2r2a_A Uncharacterized protein 95.6 0.0074 2.5E-07 45.0 3.0 23 8-30 5-27 (199)
455 2c61_A A-type ATP synthase non 95.6 0.0077 2.6E-07 50.6 3.5 51 10-60 154-207 (469)
456 3k53_A Ferrous iron transport 95.6 0.0078 2.7E-07 47.1 3.4 24 8-31 3-26 (271)
457 2p67_A LAO/AO transport system 95.6 0.0079 2.7E-07 48.8 3.5 25 6-30 54-78 (341)
458 4hlc_A DTMP kinase, thymidylat 95.6 0.023 7.7E-07 42.5 5.7 23 9-31 3-25 (205)
459 2rcn_A Probable GTPase ENGC; Y 95.6 0.0069 2.4E-07 49.3 3.0 23 9-31 216-238 (358)
460 2fg5_A RAB-22B, RAS-related pr 95.6 0.0065 2.2E-07 44.7 2.7 24 8-31 23-46 (192)
461 2h57_A ADP-ribosylation factor 95.6 0.006 2.1E-07 44.7 2.5 25 7-31 20-44 (190)
462 2fu5_C RAS-related protein RAB 95.6 0.0054 1.9E-07 44.6 2.2 26 6-31 6-31 (183)
463 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0087 3E-07 43.5 3.3 24 8-31 5-28 (186)
464 3gmt_A Adenylate kinase; ssgci 95.6 0.006 2.1E-07 46.4 2.5 23 8-30 8-30 (230)
465 3llu_A RAS-related GTP-binding 95.5 0.008 2.7E-07 44.4 3.1 26 6-31 18-43 (196)
466 2qnr_A Septin-2, protein NEDD5 95.5 0.0055 1.9E-07 48.9 2.3 21 10-30 20-40 (301)
467 2ew1_A RAS-related protein RAB 95.5 0.0084 2.9E-07 44.6 3.2 25 7-31 25-49 (201)
468 2yv5_A YJEQ protein; hydrolase 95.5 0.0073 2.5E-07 48.2 3.0 22 8-29 165-186 (302)
469 2j1l_A RHO-related GTP-binding 95.5 0.007 2.4E-07 45.5 2.8 24 8-31 34-57 (214)
470 3reg_A RHO-like small GTPase; 95.5 0.0073 2.5E-07 44.4 2.8 24 8-31 23-46 (194)
471 3oes_A GTPase rhebl1; small GT 95.5 0.0069 2.4E-07 44.9 2.7 25 7-31 23-47 (201)
472 2afh_E Nitrogenase iron protei 95.5 0.0097 3.3E-07 47.0 3.7 39 8-48 2-40 (289)
473 4dhe_A Probable GTP-binding pr 95.5 0.0055 1.9E-07 46.2 2.2 26 6-31 27-52 (223)
474 2o52_A RAS-related protein RAB 95.5 0.0085 2.9E-07 44.4 3.2 25 7-31 24-48 (200)
475 3iby_A Ferrous iron transport 95.5 0.0071 2.4E-07 47.0 2.8 23 9-31 2-24 (256)
476 3tkl_A RAS-related protein RAB 95.5 0.012 4.2E-07 43.1 4.0 24 8-31 16-39 (196)
477 1bif_A 6-phosphofructo-2-kinas 95.5 0.0084 2.9E-07 51.0 3.4 25 7-31 38-62 (469)
478 2gf9_A RAS-related protein RAB 95.5 0.0099 3.4E-07 43.5 3.5 24 8-31 22-45 (189)
479 1tq4_A IIGP1, interferon-induc 95.5 0.0083 2.8E-07 49.9 3.3 24 7-30 68-91 (413)
480 2gk6_A Regulator of nonsense t 95.5 0.0092 3.1E-07 52.6 3.8 40 8-49 195-234 (624)
481 1m8p_A Sulfate adenylyltransfe 95.5 0.0081 2.8E-07 52.3 3.4 25 7-31 395-419 (573)
482 2h17_A ADP-ribosylation factor 95.5 0.008 2.7E-07 43.7 2.9 25 7-31 20-44 (181)
483 2a5j_A RAS-related protein RAB 95.5 0.01 3.4E-07 43.6 3.5 24 8-31 21-44 (191)
484 2p5s_A RAS and EF-hand domain 95.5 0.0095 3.3E-07 44.1 3.3 25 7-31 27-51 (199)
485 3fdi_A Uncharacterized protein 95.5 0.0066 2.3E-07 45.3 2.4 24 8-31 6-29 (201)
486 4b3f_X DNA-binding protein smu 95.5 0.0079 2.7E-07 53.3 3.3 48 8-58 205-252 (646)
487 3t1o_A Gliding protein MGLA; G 95.5 0.0077 2.6E-07 44.2 2.8 23 8-30 14-36 (198)
488 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0098 3.3E-07 44.2 3.4 26 6-31 6-31 (206)
489 1x3s_A RAS-related protein RAB 95.4 0.0081 2.8E-07 44.1 2.8 24 8-31 15-38 (195)
490 2xtp_A GTPase IMAP family memb 95.4 0.01 3.4E-07 46.1 3.4 25 7-31 21-45 (260)
491 2gf0_A GTP-binding protein DI- 95.4 0.011 3.9E-07 43.5 3.5 26 6-31 6-31 (199)
492 3upu_A ATP-dependent DNA helic 95.4 0.0091 3.1E-07 50.6 3.4 23 9-31 46-68 (459)
493 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0074 2.5E-07 51.1 2.7 25 7-31 137-161 (460)
494 2f7s_A C25KG, RAS-related prot 95.4 0.0089 3E-07 44.8 2.9 25 7-31 24-48 (217)
495 1u0l_A Probable GTPase ENGC; p 95.4 0.0089 3E-07 47.6 3.0 23 8-30 169-191 (301)
496 4dzz_A Plasmid partitioning pr 95.3 0.014 4.9E-07 43.3 4.0 41 9-51 2-43 (206)
497 2obl_A ESCN; ATPase, hydrolase 95.3 0.0089 3E-07 48.6 2.9 25 7-31 70-94 (347)
498 3tmk_A Thymidylate kinase; pho 95.3 0.0093 3.2E-07 45.0 2.8 24 8-31 5-28 (216)
499 3vkw_A Replicase large subunit 95.3 0.011 3.9E-07 49.4 3.5 26 5-30 158-183 (446)
500 3cph_A RAS-related protein SEC 95.3 0.012 4E-07 44.0 3.3 25 7-31 19-43 (213)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.1e-36 Score=263.46 Aligned_cols=240 Identities=15% Similarity=0.213 Sum_probs=173.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC--CcccccCCceeEEEEeCCCC--CHHHHHHHHHHHHhhccCCCCccccccccH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN--NDGLKTHFSSRAWVTVGKEY--NKNELLRTVIKEFHSFSGQPTPVEIHKMEE 80 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 80 (263)
++..++|+|+|+||+||||||.++++ +..++.+|+.++|+++.... +....+..++.++...............+.
T Consensus 149 ~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 228 (549)
T 2a5y_B 149 DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 228 (549)
T ss_dssp TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccH
Confidence 34679999999999999999999996 45788899999999988764 677888888888865422111112223345
Q ss_pred HHHHHHHHHHhCCc-eEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccCCCccchHH
Q 039728 81 MELITTLRGHLKDK-NYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWK 159 (263)
Q Consensus 81 ~~~~~~~~~~l~~~-~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ 159 (263)
..+...+++.+.++ ++||||||+|+...+ .+.. .+|++||||||+..+...+... ...+++++|+.+|+++
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~ 300 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT--CEFIEVTSLEIDECYD 300 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC--EEEEECCCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC--CeEEECCCCCHHHHHH
Confidence 67788899999986 999999999987654 2221 1689999999998887654321 2579999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 039728 160 LFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSE 239 (263)
Q Consensus 160 ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (263)
||.+.++... ..+...+.+.+|+++|+|+|||++++|+.++.+ . ..|...+........ ...+..++..
T Consensus 301 Lf~~~a~~~~----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~--w~~~~~l~~~l~~~~----~~~i~~~l~~ 369 (549)
T 2a5y_B 301 FLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T--FEKMAQLNNKLESRG----LVGVECITPY 369 (549)
T ss_dssp HHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S--HHHHHHHHHHHHHHC----SSTTCCCSSS
T ss_pred HHHHHhcCCC----CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h--HHHHHHhHHHhhccc----HHHHHHHHhc
Confidence 9999976541 146778899999999999999999999998765 2 334333332111100 1234444555
Q ss_pred hhccCchhhhHHHh-----------hhhccCCCCC
Q 039728 240 GYHDLPHHLKSCLL-----------YFGLFQESCK 263 (263)
Q Consensus 240 s~~~L~~~~~~~~~-----------~la~fp~~~~ 263 (263)
||+.||+..|.||. +||+||++++
T Consensus 370 Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~ 404 (549)
T 2a5y_B 370 SYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVD 404 (549)
T ss_dssp SSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCC
T ss_pred ccccccHHHHHHHhccchhhhhHhhheeeeCCCCe
Confidence 55555555555555 9999999874
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-32 Score=246.71 Aligned_cols=224 Identities=17% Similarity=0.230 Sum_probs=167.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCce-eEEEEeCCCCCHHHHHHHHHHHHhhccCC---CCcc-ccccccH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSS-RAWVTVGKEYNKNELLRTVIKEFHSFSGQ---PTPV-EIHKMEE 80 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~-~~~~~~~ 80 (263)
++.++|+|+||||+||||||.+++++.++..+|+. ++|++++...+...++..++..+...... .... .....+.
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~l 227 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHH
T ss_pred CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCH
Confidence 34789999999999999999999976567788886 78999988888777777777755433211 0000 0011123
Q ss_pred HHHHHHHHHHh---CCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceecc------C
Q 039728 81 MELITTLRGHL---KDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELE------T 151 (263)
Q Consensus 81 ~~~~~~~~~~l---~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~------~ 151 (263)
+.....++..+ .++++||||||+|+...++.+ .+|++||||||+..+....... ..+.++ +
T Consensus 228 eeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~---~vy~LeL~d~dL~ 297 (1221)
T 1vt4_I 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAA---TTTHISLDHHSMT 297 (1221)
T ss_dssp HHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHH---SSCEEEECSSSSC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCC---eEEEecCccccCC
Confidence 44555566544 679999999999997666543 2689999999999877543322 345566 8
Q ss_pred CCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccCCCCCch
Q 039728 152 LPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLK 231 (263)
Q Consensus 152 ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (263)
|+.+|+++||.+..... . .+...+ .|+|+|+||+++|+.|+....+...|... ...
T Consensus 298 LS~eEA~eLF~~~~g~~------~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~------------~~~ 353 (1221)
T 1vt4_I 298 LTPDEVKSLLLKYLDCR------P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV------------NCD 353 (1221)
T ss_dssp CCHHHHHHHHHHHHCCC------T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC------------SCH
T ss_pred cCHHHHHHHHHHHcCCC------H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC------------Chh
Confidence 99999999999986432 1 122333 39999999999999999886567888642 127
Q ss_pred hHHHHHHHhhccCchhh-hHHHhhhhccCCCCC
Q 039728 232 DCNRVLSEGYHDLPHHL-KSCLLYFGLFQESCK 263 (263)
Q Consensus 232 ~~~~~l~~s~~~L~~~~-~~~~~~la~fp~~~~ 263 (263)
.+..++..||+.|+++. |.||++||+||+++.
T Consensus 354 ~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~ 386 (1221)
T 1vt4_I 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386 (1221)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence 89999999999999999 999999999999863
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=2.7e-31 Score=251.32 Aligned_cols=239 Identities=21% Similarity=0.319 Sum_probs=177.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccc-ccCCc-eeEEEEeCCCCC--HHHHHHHHHHHHhhccCCCCcccccccc
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNNDGL-KTHFS-SRAWVTVGKEYN--KNELLRTVIKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 79 (263)
.+++.++|+|+|+||+||||||.+++++... ..+|. .++|+++..... ....+..++..+...... ......+
T Consensus 143 ~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ 219 (1249)
T 3sfz_A 143 LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESF---SQRLPLN 219 (1249)
T ss_dssp TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTT---CSSCCSS
T ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhccc---ccCCCCC
Confidence 3567899999999999999999999995322 44455 566999877433 233355555555433211 1223345
Q ss_pred HHHHHHHHHHHhCCc--eEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceeccC-CCccc
Q 039728 80 EMELITTLRGHLKDK--NYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELET-LPPNE 156 (263)
Q Consensus 80 ~~~~~~~~~~~l~~~--~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l~~-ls~~e 156 (263)
.......++..+.++ ++||||||+|+...+.. ..++++||||||+..+...... ..+.+.+.+ |+.+|
T Consensus 220 ~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~-------~~~~~~ilvTtR~~~~~~~~~~--~~~~~~~~~~l~~~~ 290 (1249)
T 3sfz_A 220 IEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILLTTRDKSVTDSVMG--PKHVVPVESGLGREK 290 (1249)
T ss_dssp HHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT-------TCSSCEEEEEESSTTTTTTCCS--CBCCEECCSSCCHHH
T ss_pred HHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh-------hcCCCEEEEEcCCHHHHHhhcC--CceEEEecCCCCHHH
Confidence 667888888888776 99999999998654333 2678999999999987643222 226788886 99999
Q ss_pred hHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccC------CCCCc
Q 039728 157 AWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILG------SDPHL 230 (263)
Q Consensus 157 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 230 (263)
+++||...+... ....++.+++|+++|+|+||||+++|++|+.++. .|...++++..... .....
T Consensus 291 a~~l~~~~~~~~------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~~~~~l~~l~~~~~~~~~~~~~~~~ 361 (1249)
T 3sfz_A 291 GLEILSLFVNMK------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---RWAYYLRQLQNKQFKRIRKSSSYDY 361 (1249)
T ss_dssp HHHHHHHHHTSC------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---CHHHHHHHHHSCCCCCSSCTTCTTH
T ss_pred HHHHHHHhhCCC------hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh---HHHHHHHHHhhhhhhhcccccccch
Confidence 999999988544 2334467899999999999999999999988764 46666666543331 12223
Q ss_pred hhHHHHHHHhhccCchhhhHHHhhhhccCCCCC
Q 039728 231 KDCNRVLSEGYHDLPHHLKSCLLYFGLFQESCK 263 (263)
Q Consensus 231 ~~~~~~l~~s~~~L~~~~~~~~~~la~fp~~~~ 263 (263)
+.+..++..||+.|++++|.||++||+||+++.
T Consensus 362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~ 394 (1249)
T 3sfz_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVK 394 (1249)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCe
Confidence 679999999999999999999999999999863
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=235.21 Aligned_cols=234 Identities=20% Similarity=0.319 Sum_probs=168.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccc-ccCCc-eeEEEEeCCCCCHHHHHHHHH---HHHhhccCCCCcccccccc
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGL-KTHFS-SRAWVTVGKEYNKNELLRTVI---KEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~---~~l~~~~~~~~~~~~~~~~ 79 (263)
+++.++|+|+|+||+||||||.+++++... ..+|+ .++|+++... +....+..+. ..+... .........+
T Consensus 144 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~---~~~~~~~~~~ 219 (591)
T 1z6t_A 144 KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQD---ESFSQRLPLN 219 (591)
T ss_dssp TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSS---CCSCSSCCCS
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccc---cccccCCCCC
Confidence 456899999999999999999999986444 66785 6889998765 3333333333 233211 1111122234
Q ss_pred HHHHHHHHHHHhCC--ceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhhhhccCCCccceec---cCCCc
Q 039728 80 EMELITTLRGHLKD--KNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHEL---ETLPP 154 (263)
Q Consensus 80 ~~~~~~~~~~~l~~--~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~~l---~~ls~ 154 (263)
.......+...+.+ +++||||||+|+...+. ...++++||||||+..+...... ..+++ ++|+.
T Consensus 220 ~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~-------~l~~~~~ilvTsR~~~~~~~~~~----~~~~v~~l~~L~~ 288 (591)
T 1z6t_A 220 IEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK-------AFDSQCQILLTTRDKSVTDSVMG----PKYVVPVESSLGK 288 (591)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHH-------TTCSSCEEEEEESCGGGGTTCCS----CEEEEECCSSCCH
T ss_pred HHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHH-------HhcCCCeEEEECCCcHHHHhcCC----CceEeecCCCCCH
Confidence 55666677776654 78999999999755332 22568899999999887654321 33444 58999
Q ss_pred cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCCCCHHHHHHHHHHhccccCC------CC
Q 039728 155 NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGS------DP 228 (263)
Q Consensus 155 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~ 228 (263)
+|+++||...++.. .....+.+.+|++.|+|+|++|.++|+.++..+. .|...++.+...... ..
T Consensus 289 ~ea~~L~~~~~~~~------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~---~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 289 EKGLEILSLFVNMK------KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN---RWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp HHHHHHHHHHHTSC------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT---CHHHHHHHHHSCCCCCSSCCCSS
T ss_pred HHHHHHHHHHhCCC------cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch---hHHHHHHHHHHhHHHHhhhcccc
Confidence 99999999998653 2223467899999999999999999999987753 577666666543211 12
Q ss_pred CchhHHHHHHHhhccCchhhhHHHhhhhccCCCC
Q 039728 229 HLKDCNRVLSEGYHDLPHHLKSCLLYFGLFQESC 262 (263)
Q Consensus 229 ~~~~~~~~l~~s~~~L~~~~~~~~~~la~fp~~~ 262 (263)
....+..++..||+.||++.|.||.++|+||+|+
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~ 393 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDV 393 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTC
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCC
Confidence 3368999999999999999999999999999875
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.69 E-value=3.9e-16 Score=128.39 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC------CHHHHHHHHHHHHhhc------cC--C---CC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY------NKNELLRTVIKEFHSF------SG--Q---PT 71 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~------~~--~---~~ 71 (263)
++++|+|++|+|||+|+.++++. .. .+|+++.... +...++..+...+... .+ . ..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE--RP-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH--SS-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHH--cC-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 78999999999999999999983 21 6677764321 4445555555443210 00 0 00
Q ss_pred ccccccccHHHHHHHHHHHhCC-ceEEEEEeCCCCchh--------HHHHHHhccCCCCCcEEEEEeCchhhhhhh----
Q 039728 72 PVEIHKMEEMELITTLRGHLKD-KNYMVVFDDVWKIDF--------WGDVEHALLDNKKCGRIIVTTRHMNVAKAC---- 138 (263)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~-~~~LlvlD~~~~~~~--------~~~l~~~l~~~~~~~~iliTsR~~~~~~~~---- 138 (263)
...............+...... ++++|||||++.... +..+...+....++.++|+|++........
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~ 184 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKIT 184 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTT
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhc
Confidence 0001123445556666554432 389999999985332 222222222222467899998876432211
Q ss_pred cc----C-CCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q 039728 139 KS----S-SPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS 204 (263)
Q Consensus 139 ~~----~-~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 204 (263)
.. . .....+.+.+|+.+|+.+++...+.... .. ..++.+..+++.++|+|+++..++..+.
T Consensus 185 ~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~--~~---~~~~~~~~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 185 DYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN--LD---VPENEIEEAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp CTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT--CC---CCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 10 1 1124789999999999999988653221 01 1146788999999999999999987653
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=1e-15 Score=126.22 Aligned_cols=226 Identities=13% Similarity=0.099 Sum_probs=127.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC-----CCHHHHHHHHHHHHhh-------------ccCC-
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE-----YNKNELLRTVIKEFHS-------------FSGQ- 69 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~-------------~~~~- 69 (263)
++++|+|++|+|||+|+.++++. ... ..+|+++... .+....+..+...+.. ....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 105 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI 105 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceE
Confidence 68999999999999999999983 322 2578886542 3445555555444321 0000
Q ss_pred --CC-cccc-----ccccHHHHHHHHHHHhCCceEEEEEeCCCCch-----hHHHHHHhccCCCCCcEEEEEeCchhhhh
Q 039728 70 --PT-PVEI-----HKMEEMELITTLRGHLKDKNYMVVFDDVWKID-----FWGDVEHALLDNKKCGRIIVTTRHMNVAK 136 (263)
Q Consensus 70 --~~-~~~~-----~~~~~~~~~~~~~~~l~~~~~LlvlD~~~~~~-----~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 136 (263)
+. .... .......+...+.+... ++++|||||++... .+..+...+.....+..+|+|+|......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~ 184 (357)
T 2fna_A 106 VIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLY 184 (357)
T ss_dssp EECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred EecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence 00 0000 11234455555544322 48999999997522 22222232222224678999999765322
Q ss_pred hh----c----cCCC-ccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhccCC
Q 039728 137 AC----K----SSSP-VHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLSTKN 207 (263)
Q Consensus 137 ~~----~----~~~~-~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~ 207 (263)
.. . .... ...+.+.+|+.+|+.+++...+.... ..... ...+++.++|+|+++..++..+....
T Consensus 185 ~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~ 257 (357)
T 2fna_A 185 DYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD--IDFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNK 257 (357)
T ss_dssp HHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT--CCCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHC
T ss_pred HHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC--CCCCc-----HHHHHHHhCCCHHHHHHHHHHHcccc
Confidence 21 1 1111 25789999999999999988653110 01111 17899999999999999988764332
Q ss_pred CCHHHHHHHH-HHhccccCCCCCchhHHHHHHHhh---ccCchhhhHHHhhhhc
Q 039728 208 RVVSEWKKLF-DRLGSILGSDPHLKDCNRVLSEGY---HDLPHHLKSCLLYFGL 257 (263)
Q Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~s~---~~L~~~~~~~~~~la~ 257 (263)
. ...|...+ +... ..+..-+...+ ..|++..+.++..+|.
T Consensus 258 ~-~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 258 N-LDFAINQTLEYAK---------KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp C-HHHHHHHHHHHHH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred c-hHHHHHHHHHHHH---------HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 2 23332211 1110 11111222111 1677888888888776
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=9e-16 Score=129.11 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=134.4
Q ss_pred CCceEEEE--EcCCCCcHHHHHHHHhCCcccccC-----Cc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCcccccc
Q 039728 6 SERSVVAV--VGVGGLGKTTLAGKLFNNDGLKTH-----FS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHK 77 (263)
Q Consensus 6 ~~~~~v~i--~G~~G~GKTtLa~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 77 (263)
...+.++| +|++|+|||+|++++++. .... +. .++|+++....+...++..++..+..... ...
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~ 119 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ------VRG 119 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC------CTT
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC------CCC
Confidence 34567888 999999999999999983 3221 12 35688876667788888888887743211 111
Q ss_pred ccHHHHHHHHHHHhC--CceEEEEEeCCCCc--------hhHHHHHHhccCC---C--CCcEEEEEeCchhhhhhhc---
Q 039728 78 MEEMELITTLRGHLK--DKNYMVVFDDVWKI--------DFWGDVEHALLDN---K--KCGRIIVTTRHMNVAKACK--- 139 (263)
Q Consensus 78 ~~~~~~~~~~~~~l~--~~~~LlvlD~~~~~--------~~~~~l~~~l~~~---~--~~~~iliTsR~~~~~~~~~--- 139 (263)
.+.......+...+. +++++|||||++.. ..+..+...+... . .+..+|+||+.........
T Consensus 120 ~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~ 199 (412)
T 1w5s_A 120 APALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKI 199 (412)
T ss_dssp CCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhc
Confidence 223344455555543 67899999999842 2233333333221 1 3455777887654332111
Q ss_pred ----cCCCccceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcC------CChhHHHHHHHHhc-----
Q 039728 140 ----SSSPVHIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCE------GLPLAIVAVGGLLS----- 204 (263)
Q Consensus 140 ----~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Pl~l~~~~~~l~----- 204 (263)
.... ..+.+++++.+++.++|..++...... ....++.+..+++.++ |+|..+..+.....
T Consensus 200 ~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 200 PQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRD---TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCT---TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCC---CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 1111 238999999999999998765311000 1112567888999999 99976655544321
Q ss_pred cC--CCCHHHHHHHHHHhccccCCCCCchhHHHHHHHhhccCchhhhHHHhhhhcc
Q 039728 205 TK--NRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLF 258 (263)
Q Consensus 205 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f 258 (263)
.. .-+...+...+..... ...+..++..||+..+.++..++.+
T Consensus 276 ~~~~~i~~~~v~~~~~~~~~-----------~~~~~~~l~~l~~~~~~~l~aia~l 320 (412)
T 1w5s_A 276 MGRDSLSEDLVRKAVSENEA-----------ASIQTHELEALSIHELIILRLIAEA 320 (412)
T ss_dssp TTCSSCCHHHHHHHHHHC-----------------CCSSSSSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhc-----------cchHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1123333333332210 1233445677888888888877764
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=5.3e-14 Score=117.19 Aligned_cols=231 Identities=17% Similarity=0.123 Sum_probs=138.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc----cC--CceeEEEEeCCCC-CHHHHHHHHHHHHhhccCCCCccccccc
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLK----TH--FSSRAWVTVGKEY-NKNELLRTVIKEFHSFSGQPTPVEIHKM 78 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~----~~--~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 78 (263)
...+.++|+|++|+|||++|+.+++..... .. ....+|+++.... +....+..++..+..... .....
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~ 117 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSV-----PKHGI 117 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCC-----CSSSS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCC-----CCCCC
Confidence 345689999999999999999998832111 01 2345678876655 777788888877743211 11222
Q ss_pred cHHHHHHHHHHHhCCceEEEEEeCCCCchh--HHHH-HHhccCCCCCcEEEEEeCchhh----hhhhccCCCccceeccC
Q 039728 79 EEMELITTLRGHLKDKNYMVVFDDVWKIDF--WGDV-EHALLDNKKCGRIIVTTRHMNV----AKACKSSSPVHIHELET 151 (263)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~LlvlD~~~~~~~--~~~l-~~~l~~~~~~~~iliTsR~~~~----~~~~~~~~~~~~~~l~~ 151 (263)
........+...+..++.+||||+++.... .... ...+.....+..+|+||+.... ......... ..+.+++
T Consensus 118 ~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~-~~i~l~~ 196 (384)
T 2qby_B 118 NLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLG-PSVIFKP 196 (384)
T ss_dssp CTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCC-CEEEECC
T ss_pred CHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCC-CeEEECC
Confidence 334556666677766555999999984321 1122 2222222256788888887532 111111111 4899999
Q ss_pred CCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcC---CChhH-HHHHHHHh--cc--CCCCHHHHHHHHHHhccc
Q 039728 152 LPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCE---GLPLA-IVAVGGLL--ST--KNRVVSEWKKLFDRLGSI 223 (263)
Q Consensus 152 ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl~-l~~~~~~l--~~--~~~~~~~~~~~~~~~~~~ 223 (263)
++.++..+++..++.......... ++.++.+++.++ |+|.. +.++-... .. ..-+.+.+...+....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-- 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE-- 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh--
Confidence 999999999998864210011112 345666777777 98873 33333322 11 2234566666655432
Q ss_pred cCCCCCchhHHHHHHHhhccCchhhhHHHhhhhc
Q 039728 224 LGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGL 257 (263)
Q Consensus 224 ~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~ 257 (263)
...+..++..|++.++.++..++.
T Consensus 272 ----------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 272 ----------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp ----------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred ----------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 244666778888888888777765
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1.5e-13 Score=114.40 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=136.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccC------CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCcccccccc
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH------FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 79 (263)
...+.++|+|++|+|||++++.+++. .... ....+|+++....+....+..++..+..... ..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~ 113 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP------FTGLS 113 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC------SSCCC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC------CCCCC
Confidence 45678999999999999999999883 3221 2245688888878888888888888843211 12223
Q ss_pred HHHHHHHHHHHh--CCceEEEEEeCCCCch----hHHHH---HHhccCC--CCCcEEEEEeCchhh----hhhhccCCCc
Q 039728 80 EMELITTLRGHL--KDKNYMVVFDDVWKID----FWGDV---EHALLDN--KKCGRIIVTTRHMNV----AKACKSSSPV 144 (263)
Q Consensus 80 ~~~~~~~~~~~l--~~~~~LlvlD~~~~~~----~~~~l---~~~l~~~--~~~~~iliTsR~~~~----~~~~~~~~~~ 144 (263)
.......+...+ .+++.+||||+++... ..+.+ ....... ..+..+|.||+.... ..........
T Consensus 114 ~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~ 193 (387)
T 2v1u_A 114 VGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE 193 (387)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS
T ss_pred HHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC
Confidence 444555555555 3468999999998432 11222 2222221 335567777776522 1112122212
Q ss_pred cceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcC---CChhHHHHHHHHh----c--c-CCCCHHHHH
Q 039728 145 HIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCE---GLPLAIVAVGGLL----S--T-KNRVVSEWK 214 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl~l~~~~~~l----~--~-~~~~~~~~~ 214 (263)
..+.+++++.++..+++...+...... ....++.++.+++.++ |+|..+..+.... . . ..-+.+.+.
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNP---GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCT---TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 478999999999999999876421001 1111345667777777 9995433332222 1 1 122455555
Q ss_pred HHHHHhccccCCCCCchhHHHHHHHhhccCchhhhHHHhhhhc
Q 039728 215 KLFDRLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGL 257 (263)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~ 257 (263)
.++.... ...+..++..|++.++.++..++.
T Consensus 271 ~a~~~~~------------~~~~~~~~~~l~~~~~~~l~a~~~ 301 (387)
T 2v1u_A 271 SARAEIE------------RDRVSEVVRTLPLHAKLVLLSIMM 301 (387)
T ss_dssp HHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHH
Confidence 5555431 234566778888888888777663
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=2.7e-13 Score=112.82 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccC---CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH---FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEME 82 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 82 (263)
...+.++|+|++|+|||||++.++.. .... ....+|+++....+....+..++..+... .+ ....+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~----~~--~~~~~~~~ 114 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVK----VP--FTGLSIAE 114 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCC----CC--SSSCCHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCC----CC--CCCCCHHH
Confidence 45678999999999999999999883 3322 22466777665555556566555544221 11 11223344
Q ss_pred HHHHHHHHhC--CceEEEEEeCCCC------chhHHHHHHhccC-CCCCcEEEEEeCchhhhhh----hccCCCccceec
Q 039728 83 LITTLRGHLK--DKNYMVVFDDVWK------IDFWGDVEHALLD-NKKCGRIIVTTRHMNVAKA----CKSSSPVHIHEL 149 (263)
Q Consensus 83 ~~~~~~~~l~--~~~~LlvlD~~~~------~~~~~~l~~~l~~-~~~~~~iliTsR~~~~~~~----~~~~~~~~~~~l 149 (263)
....+...+. +++.+||||+++. ...+..+...+.. ...+..+|+||+....... .........+.+
T Consensus 115 ~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l 194 (386)
T 2qby_A 115 LYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIF 194 (386)
T ss_dssp HHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEe
Confidence 4444544443 4589999999973 3344445444422 2335567777776532211 111111147999
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcC---CChhHHHHHHHHhc------c-CCCCHHHHHHHHHH
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCE---GLPLAIVAVGGLLS------T-KNRVVSEWKKLFDR 219 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl~l~~~~~~l~------~-~~~~~~~~~~~~~~ 219 (263)
++++.++..+++...+...... .....+....+++.++ |+|..+..+..... . ..-+.+.+..++..
T Consensus 195 ~~l~~~~~~~il~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 195 PPYNAEELEDILTKRAQMAFKP---GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCS---SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 9999999999999865321001 1122455666777776 99984443333221 1 12234555544443
Q ss_pred hccccCCCCCchhHHHHHHHhhccCchhhhHHHhhhhc
Q 039728 220 LGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGL 257 (263)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~ 257 (263)
.. ...+...+..|++..+.++..++.
T Consensus 272 ~~------------~~~~~~~~~~l~~~~~~il~ai~~ 297 (386)
T 2qby_A 272 IE------------RDRVRDIILTLPFHSKLVLMAVVS 297 (386)
T ss_dssp HH------------HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred Hh------------hchHHHHHHcCCHHHHHHHHHHHH
Confidence 21 234556677788777777776663
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=5.4e-13 Score=111.23 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=134.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccC-CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTH-FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
.+.++|+|++|+||||+++.++.. .... -..++|+++....+....+..++..+..... ............
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~ 115 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP------RRGLSRDEFLAL 115 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC------SSCCCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC------CCCCCHHHHHHH
Confidence 348999999999999999999883 3332 2346688877777777888888777643211 112233344444
Q ss_pred HHHHh--CCceEEEEEeCCCCc--hhHHHHHHhccCCC----CCcEEEEEeCchhhhhhhc----cCCCccceeccCCCc
Q 039728 87 LRGHL--KDKNYMVVFDDVWKI--DFWGDVEHALLDNK----KCGRIIVTTRHMNVAKACK----SSSPVHIHELETLPP 154 (263)
Q Consensus 87 ~~~~l--~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~----~~~~iliTsR~~~~~~~~~----~~~~~~~~~l~~ls~ 154 (263)
+...+ .+++.+||||+++.. ..+..+...+.... .+..+|++|+......... .......+.+++++.
T Consensus 116 l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~ 195 (389)
T 1fnn_A 116 LVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTK 195 (389)
T ss_dssp HHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBH
T ss_pred HHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCH
Confidence 44444 356889999999853 34555555543322 3667787877653222111 100113689999999
Q ss_pred cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhc---------CCChhHHHHHHHHhc------c-CCCCHHHHHHHHH
Q 039728 155 NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKC---------EGLPLAIVAVGGLLS------T-KNRVVSEWKKLFD 218 (263)
Q Consensus 155 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Pl~l~~~~~~l~------~-~~~~~~~~~~~~~ 218 (263)
++..+++...+...... ....++.+..+++.+ +|+|..+..+..... . ..-+.+.......
T Consensus 196 ~~~~~~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 196 DQIFDILLDRAKAGLAE---GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp HHHHHHHHHHHHHHBCT---TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 99999998886431000 122256778888888 799866555444321 1 1123334444433
Q ss_pred HhccccCCCCCchhHHHHHHHhhccCchhhhHHHhhhhcc
Q 039728 219 RLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLF 258 (263)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~la~f 258 (263)
.... ..+...+..|++..+.++..++.+
T Consensus 273 ~~~~------------~~~~~~l~~l~~~~~~~L~~l~~~ 300 (389)
T 1fnn_A 273 EVLF------------GISEEVLIGLPLHEKLFLLAIVRS 300 (389)
T ss_dssp HHSC------------CCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhh------------hhHHHHHHcCCHHHHHHHHHHHHH
Confidence 3221 112333556777777776666543
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.49 E-value=3e-13 Score=105.24 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=74.2
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCchhhh-hhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHMNVA-KACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++.+||+||++. ...++.+...+.....+..+|+||+..... ..... ....+.+++++.++..+++...+....
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~--r~~~i~l~~l~~~e~~~~l~~~~~~~~ 202 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRHQLEHILNEEH 202 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH--HhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4678999999984 445666766666656677888888765322 22222 236899999999999999998874321
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGGLLS 204 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 204 (263)
....++.+..+++.++|+|..+..+...+.
T Consensus 203 -----~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 203 -----IAHEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp -----CCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111246788899999999999888776553
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=2.7e-12 Score=98.44 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
+.++|+|++|+|||++++.+++... ...+. ..+.++......... ....+..+....
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------------- 96 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV-VRHKIKEFARTA-------------------- 96 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHH-HHHHHHHHHTSC--------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHH-HHHHHHHHhccc--------------------
Confidence 3489999999999999999987321 11122 223334333333222 111111111100
Q ss_pred HHHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchhhh-hhhccCCCccceeccCCCccchHHHHHHH
Q 039728 88 RGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMNVA-KACKSSSPVHIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l~~ls~~e~~~ll~~~ 164 (263)
.....++.+||+||++.. ...+.+...+.....++.+|+||+..... ..... ....+.+.+++.++..+++...
T Consensus 97 -~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 97 -PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp -CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred -CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHHHHHHHHHH
Confidence 001246789999999853 34455555555555667888888765322 22222 2257899999999999999987
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 165 ASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
+.... ....++.+..+++.++|+|..+..+...+
T Consensus 174 ~~~~~-----~~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 174 CEKEG-----VKITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp HHHHT-----CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 64221 11124677889999999999655554443
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=6.6e-11 Score=96.04 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
.++|+|++|+|||++|+.+++... ...+. ..++++..+... ...+..++..+....
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~--------------------- 100 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRG-IDVVRNQIKHFAQKK--------------------- 100 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCS-HHHHHTHHHHHHHBC---------------------
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccC-hHHHHHHHHHHHhcc---------------------
Confidence 389999999999999999988321 11111 233444333222 222222222221100
Q ss_pred HHh-CCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchhh-hhhhccCCCccceeccCCCccchHHHHHHH
Q 039728 89 GHL-KDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMNV-AKACKSSSPVHIHELETLPPNEAWKLFCRK 164 (263)
Q Consensus 89 ~~l-~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~~-~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~ 164 (263)
..+ .+++.++|+||++.. ...+.+...+.....++.+|++|+.... ...... +...+.+.+++.++..+++...
T Consensus 101 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh--hceEEeecCCCHHHHHHHHHHH
Confidence 011 345789999999853 3444555555555566778887766432 222222 2368999999999999999887
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhcCCChhH-HHHHH
Q 039728 165 ASGPSSGGCCPSELKELSQDILGKCEGLPLA-IVAVG 200 (263)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~-l~~~~ 200 (263)
+.... ....++.+..+++.++|+|.. +..+.
T Consensus 179 ~~~~~-----~~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 179 IKLED-----VKYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHT-----CCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 54211 011246778899999999954 44443
No 15
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.17 E-value=6.8e-10 Score=89.18 Aligned_cols=157 Identities=8% Similarity=-0.022 Sum_probs=91.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc---CC--ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCcccccccc
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKT---HF--SSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 79 (263)
++..+.+.|+|++|+|||++++.+++...... .. -..+++++....+....+..++.++..... .....
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~------~~~~~ 115 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL------CGDIS 115 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--------CCCC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC------CchHH
Confidence 34667889999999999999999998432111 11 135678888888888999999998854311 11112
Q ss_pred HHHHHHHHHHH--hCCceEEEEEeCCCCchhHHHHHHhcc---CCCCCcEEEEEeCchhh-----hhhhccCCCccceec
Q 039728 80 EMELITTLRGH--LKDKNYMVVFDDVWKIDFWGDVEHALL---DNKKCGRIIVTTRHMNV-----AKACKSSSPVHIHEL 149 (263)
Q Consensus 80 ~~~~~~~~~~~--l~~~~~LlvlD~~~~~~~~~~l~~~l~---~~~~~~~iliTsR~~~~-----~~~~~~~~~~~~~~l 149 (263)
...+...+... -.+++++++||++|.....+.+...+. .......+|.++...+. ............+.+
T Consensus 116 ~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F 195 (318)
T 3te6_A 116 LEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKL 195 (318)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEe
Confidence 22333333321 245679999999986432222322221 11112234444433211 111111111246899
Q ss_pred cCCCccchHHHHHHHhcC
Q 039728 150 ETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~ 167 (263)
++++.+|..+++..++..
T Consensus 196 ~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 196 NKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988753
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=6.9e-10 Score=90.16 Aligned_cols=164 Identities=18% Similarity=0.082 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCc--eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS--SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
+.++|+|++|+|||++|+.+++. ...... ..+.++..+.. ....+...+..+...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------- 103 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDER-GINVIREKVKEFART-------------------- 103 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHH-HHHTTHHHHHHHHHS--------------------
T ss_pred CeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccC-chHHHHHHHHHHHhh--------------------
Confidence 34899999999999999999883 221111 12233322110 001111111111000
Q ss_pred HHHHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchhh-hhhhccCCCccceeccCCCccchHHHHHH
Q 039728 87 LRGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMNV-AKACKSSSPVHIHELETLPPNEAWKLFCR 163 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~~-~~~~~~~~~~~~~~l~~ls~~e~~~ll~~ 163 (263)
.....+++.++|+|+++.. ...+.+...+.....++++|+|+..... ....... ...+.+.+++.++..+++..
T Consensus 104 -~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~~~~~~l~~~~~~~~l~~ 180 (327)
T 1iqp_A 104 -KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRFRPLRDEDIAKRLRY 180 (327)
T ss_dssp -CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT--EEEEECCCCCHHHHHHHHHH
T ss_pred -CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh--CcEEEecCCCHHHHHHHHHH
Confidence 0001146789999999843 4455566665555567788888876432 1222221 25789999999999999998
Q ss_pred HhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 164 KASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
.+.... ....++.+..+++.++|+|..+..+...+
T Consensus 181 ~~~~~~-----~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 181 IAENEG-----LELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHTTT-----CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcC-----CCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 765331 12235678889999999998665554444
No 17
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.10 E-value=3.4e-09 Score=83.96 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=80.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
....+.++|+|++|+|||++|+.+++. .. .+ .+.++..... . . ...........
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~~-------------~----g----~~~~~~~~~~~ 114 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDKM-------------I----G----FSETAKCQAMK 114 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGGC-------------T----T----CCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHHh-------------c----C----CchHHHHHHHH
Confidence 345678999999999999999999983 22 22 1223322100 0 0 00000011122
Q ss_pred HHHHHHhCCceEEEEEeCCCCc-----------h-hHHHHHHhccCC---CCCcEEEEEeCchhhhhhhccCCC-cccee
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKI-----------D-FWGDVEHALLDN---KKCGRIIVTTRHMNVAKACKSSSP-VHIHE 148 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~-----------~-~~~~l~~~l~~~---~~~~~iliTsR~~~~~~~~~~~~~-~~~~~ 148 (263)
..+......++.+|+||+++.. . .++.+...+... .....+|.||.............. ...+.
T Consensus 115 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~ 194 (272)
T 1d2n_A 115 KIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIH 194 (272)
T ss_dssp HHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEE
T ss_pred HHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEc
Confidence 2222233456789999998632 1 223333333321 223346667776654433111112 25688
Q ss_pred ccCCCc-cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCC
Q 039728 149 LETLPP-NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEG 191 (263)
Q Consensus 149 l~~ls~-~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 191 (263)
+++++. ++...++.....-. .+.+..+++.+.|
T Consensus 195 ~p~l~~r~~i~~i~~~~~~~~----------~~~~~~l~~~~~g 228 (272)
T 1d2n_A 195 VPNIATGEQLLEALELLGNFK----------DKERTTIAQQVKG 228 (272)
T ss_dssp CCCEEEHHHHHHHHHHHTCSC----------HHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHhcCCCC----------HHHHHHHHHHhcC
Confidence 888888 66666666542111 4567778888877
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.08 E-value=7.1e-10 Score=90.06 Aligned_cols=156 Identities=18% Similarity=0.116 Sum_probs=92.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++|+.+++. ... ..+++++....... .+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~----------------------------~l~~~ 83 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPG----------------------------DLAAI 83 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHH----------------------------HHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChH----------------------------HHHHH
Confidence 3467899999999999999999883 221 12344443322211 11111
Q ss_pred HHHHhCCceEEEEEeCCCCch--hHHHHHHhccCC------------------CCCcEEEEEeCchhhh-hhhccCCCc-
Q 039728 87 LRGHLKDKNYMVVFDDVWKID--FWGDVEHALLDN------------------KKCGRIIVTTRHMNVA-KACKSSSPV- 144 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~--~~~~l~~~l~~~------------------~~~~~iliTsR~~~~~-~~~~~~~~~- 144 (263)
+...+ .++.+|+||+++... ....+...+... .++..+|.+|...... .... .+.
T Consensus 84 l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~--~R~~ 160 (324)
T 1hqc_A 84 LANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLL--SRFG 160 (324)
T ss_dssp HTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTT--TTCS
T ss_pred HHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHH--hccc
Confidence 11111 245689999998543 233333332221 0234566666543221 1111 122
Q ss_pred cceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 145 HIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
..+.+.+++.++..+++........ ....++.+..+++.++|+|..+..+...+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLG-----VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTT-----CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4789999999999999988875431 11224678889999999999888777665
No 19
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.06 E-value=3.5e-09 Score=86.36 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=67.6
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++-++|+|+++. ....+.+...+...+.+..+|++|.+. .+....... ...+.+.+++.++..+++.....-.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR--c~~~~~~~~~~~~~~~~L~~~~~~~- 183 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR--CRLHYLAPPPEQYAVTWLSREVTMS- 183 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHCCCC-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc--ceeeeCCCCCHHHHHHHHHHhcCCC-
Confidence 4567899999984 445667777777666667777666654 344444333 3689999999999999999886211
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
++.+..+++.++|.|..+..+
T Consensus 184 ---------~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 184 ---------QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ---------HHHHHHHHHHTTTCHHHHHHT
T ss_pred ---------HHHHHHHHHHcCCCHHHHHHH
Confidence 456678999999999765443
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.05 E-value=1.1e-09 Score=90.70 Aligned_cols=103 Identities=10% Similarity=0.041 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
+++.++|+|+++. ....+.+...+...+.+..+|++|.... ....... ....+.+.+++.++..+++...+....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~ 195 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRHQLEHILNEEH 195 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999984 3456667766666556667777776443 2222222 236899999999999999987763211
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 170 SGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
....++.+..+++.++|+|..+..+...
T Consensus 196 -----~~~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 196 -----IAHEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp -----CCBCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1112466788999999999987766544
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.04 E-value=8.3e-09 Score=83.66 Aligned_cols=164 Identities=12% Similarity=0.005 Sum_probs=90.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||+||+.++.. .. -...+.++.....+ . ..+.........
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~--~~--~~~~~~i~~~~l~~--------------~--------~~g~~~~~~~~l 97 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE--AN--NSTFFSISSSDLVS--------------K--------WLGESEKLVKNL 97 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH--TT--SCEEEEEECCSSCC--------------S--------SCCSCHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH--cC--CCcEEEEEhHHHHh--------------h--------hhhHHHHHHHHH
Confidence 3478999999999999999999983 21 11223344332111 0 000111122222
Q ss_pred HHHHhCCceEEEEEeCCCCc-------------hhHHHHHHhccCC---CCCcEEEEEeCchhhh-hhhccCCCccceec
Q 039728 87 LRGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALLDN---KKCGRIIVTTRHMNVA-KACKSSSPVHIHEL 149 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~---~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l 149 (263)
+...-..++.+|+||+++.. ....++...+... ..+..+|.||...... ....... ...+.+
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf-~~~i~i 176 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF-EKRIYI 176 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTC-CEEEEC
T ss_pred HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhc-CeEEEe
Confidence 22222356789999999843 1123344333322 2344455556543221 1111111 156788
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL-PLAIVAVGGL 202 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~~ 202 (263)
+..+.++..+++...+.... ....+..+..|++.+.|. +..|..+...
T Consensus 177 ~~P~~~~r~~il~~~l~~~~-----~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 177 PLPEPHARAAMFKLHLGTTQ-----NSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp CCCCHHHHHHHHHHHHTTCC-----BCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 88899999999988875431 111246778899999987 5556666553
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.03 E-value=1.7e-10 Score=89.47 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||+++..+++. .......+.|++....... +. .
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----------~~---------~------------ 97 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----------ST---------A------------ 97 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----------CG---------G------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----------HH---------H------------
Confidence 4678999999999999999999883 3322334566665431100 00 0
Q ss_pred HHHHhCCceEEEEEeCCCCch--h--HHHHHHhccCC-CCCc-EEEEEeCchhh-h----hhhccC-CCccceeccCCCc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID--F--WGDVEHALLDN-KKCG-RIIVTTRHMNV-A----KACKSS-SPVHIHELETLPP 154 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~--~--~~~l~~~l~~~-~~~~-~iliTsR~~~~-~----~~~~~~-~~~~~~~l~~ls~ 154 (263)
....+ .++.+||+||++... . ...+...+... ..+. .+|+||+.... . ...... .....+.+++++.
T Consensus 98 ~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~ 176 (242)
T 3bos_A 98 LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMD 176 (242)
T ss_dssp GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCG
T ss_pred HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCH
Confidence 00011 345789999997432 1 23333332211 1122 47777764321 0 111100 0015789999999
Q ss_pred cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 155 NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 155 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
++..+++...+.... ....++.+..+++.++|++..+..+...
T Consensus 177 ~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 177 DEKLAALQRRAAMRG-----LQLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp GGHHHHHHHHHHHTT-----CCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999998764221 1122567788899999998776655443
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.03 E-value=1.6e-08 Score=79.49 Aligned_cols=165 Identities=11% Similarity=0.048 Sum_probs=87.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++|+.+++. ... ..+.++.....+. ............
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 90 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVEV----------------------IGGLGAARVRSL 90 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSSS----------------------STTHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHhh----------------------ccChhHHHHHHH
Confidence 4566899999999999999999883 321 1334444332110 000011112222
Q ss_pred HHHHhCCceEEEEEeCCCCc-----------------hhHHHHHHhccCC--CCCcEEEEEeCchhhhh-hhccCCC-cc
Q 039728 87 LRGHLKDKNYMVVFDDVWKI-----------------DFWGDVEHALLDN--KKCGRIIVTTRHMNVAK-ACKSSSP-VH 145 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~-----------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~-~~~~~~~-~~ 145 (263)
+.......+.+|+||+++.. ..+..+...+... ..+..+|.||....... ....... ..
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~ 170 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDR 170 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCE
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCe
Confidence 22222345789999999853 1123343333322 23445666665543221 1111001 15
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChh-HHHHHHHH
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPL-AIVAVGGL 202 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~~~ 202 (263)
.+.++..+.++..+++...+.... . ..........+++.+.|++- .+..+...
T Consensus 171 ~i~i~~p~~~~r~~il~~~~~~~~--~--~~~~~~~~~~l~~~~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 171 HVFIDLPTLQERREIFEQHLKSLK--L--TQSSTFYSQRLAELTPGFSGADIANICNE 224 (262)
T ss_dssp EEECCSCCHHHHHHHHHHHHHHTT--C--CBTHHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHHhCC--C--CcchhhHHHHHHHHCCCCCHHHHHHHHHH
Confidence 678889999999999988764331 1 11122245778888888754 55554443
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.02 E-value=1.8e-09 Score=86.07 Aligned_cols=162 Identities=12% Similarity=0.060 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++|+.++.. .... .+.++...... ...+.........
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~----------------------~~~~~~~~~~~~~ 102 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK----------------------KFIGEGASLVKDI 102 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC----------------------CSTTHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH----------------------hccchHHHHHHHH
Confidence 4567999999999999999999883 2211 22333221100 0000011111222
Q ss_pred HHHHhCCceEEEEEeCCCCc----------------hhHHHHHHhcc--CCCCCcEEEEEeCchhhhhh-hccCCCc-cc
Q 039728 87 LRGHLKDKNYMVVFDDVWKI----------------DFWGDVEHALL--DNKKCGRIIVTTRHMNVAKA-CKSSSPV-HI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~--~~~~~~~iliTsR~~~~~~~-~~~~~~~-~~ 146 (263)
+.......+.+|+||+++.. ..+..+...+. ....+..+|.||........ ....... ..
T Consensus 103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRI 182 (285)
T ss_dssp HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEE
T ss_pred HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeE
Confidence 22222346789999999742 11222332222 22335567777765533221 1111111 46
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCC-ChhHHHHHHH
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEG-LPLAIVAVGG 201 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~ 201 (263)
+.++..+.++..+++.......... .......+++.+.| .|..+..+..
T Consensus 183 i~~~~p~~~~r~~il~~~~~~~~~~------~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILKIHTRKMNLA------EDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBC------TTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHhcCCCC------CcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 8899999999999999887543211 11235667778877 4555554443
No 25
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.02 E-value=2e-09 Score=87.08 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
+.++++|++|+|||++|+.+++... ...+. ..+.++........ ... .....+
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~------------------------~~~~~~ 92 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID-VVR------------------------HKIKEF 92 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT-TSS------------------------HHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH-HHH------------------------HHHHHH
Confidence 3489999999999999999987321 11111 22334433211100 000 111111
Q ss_pred HHH--h-CCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHH
Q 039728 88 RGH--L-KDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLF 161 (263)
Q Consensus 88 ~~~--l-~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll 161 (263)
... + .+++.++|+|+++.. ...+.+...+...+.++.+|++|.... ........ ...+.+.+++.++..+++
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR--CAVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp HHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT--CEEEECCCCCHHHHHHHH
T ss_pred HhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh--CeEEEecCCCHHHHHHHH
Confidence 111 1 245789999999843 334555555555556677777776543 22222222 368999999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 162 CRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
...+.... ....++.+..+++.++|++..+......+
T Consensus 171 ~~~~~~~~-----~~i~~~~l~~l~~~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 171 LEICEKEG-----VKITEDGLEALIYISGGDFRKAINALQGA 207 (319)
T ss_dssp HHHHHTTC-----CCBCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 98875431 11225677889999999998655544433
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.02 E-value=4.9e-10 Score=94.74 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCc--eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS--SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...++|+|++|+||||||+.+++ .....++ .+++++.. .+...+...+... . ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------------~----~~ 185 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG------------K----LN 185 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT------------C----HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc------------c----HH
Confidence 56789999999999999999988 3333322 24455543 2233333333211 0 11
Q ss_pred HHHHHhCCceEEEEEeCCCCch----hHHHHHHhccC-CCCCcEEEEEeCchh---------hhhhhccCCCccceeccC
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID----FWGDVEHALLD-NKKCGRIIVTTRHMN---------VAKACKSSSPVHIHELET 151 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~----~~~~l~~~l~~-~~~~~~iliTsR~~~---------~~~~~~~~~~~~~~~l~~ 151 (263)
.+...+..++-+|+|||++... ..+.+...+.. ...+..||+||.... ....+... ..+.+.+
T Consensus 186 ~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g---~~i~l~~ 262 (440)
T 2z4s_A 186 EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG---LVAKLEP 262 (440)
T ss_dssp HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS---BCCBCCC
T ss_pred HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC---eEEEeCC
Confidence 2333334356799999997422 23333333321 134567888887632 22222211 4688999
Q ss_pred CCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh------ccCCCCHHHHHHHHHHhc
Q 039728 152 LPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL------STKNRVVSEWKKLFDRLG 221 (263)
Q Consensus 152 ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l------~~~~~~~~~~~~~~~~~~ 221 (263)
++.++..+++.+.+.... ...+ ++.+..|++.+.|++.-+.-+...+ ....-+.+.+...+.++.
T Consensus 263 p~~e~r~~iL~~~~~~~~--~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 263 PDEETRKSIARKMLEIEH--GELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp CCHHHHHHHHHHHHHHHT--CCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred CCHHHHHHHHHHHHHHcC--CCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 999999999988764211 1111 3457788899999998665544433 223345566666666543
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.93 E-value=1e-08 Score=82.64 Aligned_cols=137 Identities=13% Similarity=0.046 Sum_probs=76.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCc--eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS--SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEME 82 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 82 (263)
......++|+|++|+|||++|+.+++......... ..+.++...- ... ..+.....
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l--------------~~~--------~~g~~~~~ 121 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL--------------VGQ--------YIGHTAPK 121 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT--------------CCS--------STTCHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh--------------hhh--------cccccHHH
Confidence 34556799999999999999998877321111111 1223332111 000 00101111
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC-----------chhHHHHHHhccCCCCCcEEEEEeCchhhhh------hhccCCCcc
Q 039728 83 LITTLRGHLKDKNYMVVFDDVWK-----------IDFWGDVEHALLDNKKCGRIIVTTRHMNVAK------ACKSSSPVH 145 (263)
Q Consensus 83 ~~~~~~~~l~~~~~LlvlD~~~~-----------~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~------~~~~~~~~~ 145 (263)
....+... ++.+|+||+++. ......+...+.....+..+|.|+....... ...... ..
T Consensus 122 ~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~-~~ 197 (309)
T 3syl_A 122 TKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI-AH 197 (309)
T ss_dssp HHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE-EE
T ss_pred HHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC-Ce
Confidence 22222222 345899999983 2344556655555555667788876543211 111110 15
Q ss_pred ceeccCCCccchHHHHHHHhcC
Q 039728 146 IHELETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~ 167 (263)
.+.+++++.++..+++...+..
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHH
Confidence 7899999999999999887753
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.93 E-value=1.1e-08 Score=86.56 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+.++|+|++|+||||+|+.+.+. ....| ..++... ... ..+..++... .
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~-~~ir~~~~~a-----------------------~ 99 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGV-KEIREAIERA-----------------------R 99 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCH-HHHHHHHHHH-----------------------H
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCH-HHHHHHHHHH-----------------------H
Confidence 467999999999999999999983 32221 1222211 111 1112211111 0
Q ss_pred HHHhCCceEEEEEeCCCCch--hHHHHHHhccCCCCCcEEEE-EeCchh--hhhhhccCCCccceeccCCCccchHHHHH
Q 039728 88 RGHLKDKNYMVVFDDVWKID--FWGDVEHALLDNKKCGRIIV-TTRHMN--VAKACKSSSPVHIHELETLPPNEAWKLFC 162 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~--~~~~l~~~l~~~~~~~~ili-TsR~~~--~~~~~~~~~~~~~~~l~~ls~~e~~~ll~ 162 (263)
.....+++.+|++|+++... ..+.+...+.. ....+|. ||.+.. +..... .+...+.+.+++.++...++.
T Consensus 100 ~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~--sR~~v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 100 QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL--SRARVYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH--TTEEEEECCCCCHHHHHHHHH
T ss_pred HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh--CceeEEeeCCcCHHHHHHHHH
Confidence 11113567899999998432 33334444433 1233444 444432 111221 223678899999999999999
Q ss_pred HHhcCCCCC--CCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 163 RKASGPSSG--GCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 163 ~~~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
..+...... .......++....+++.++|++..+.-+...+
T Consensus 176 ~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 176 QAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp HHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 887542100 01122345678888888999988665554443
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=2.5e-09 Score=87.94 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHHHhcCCC
Q 039728 93 DKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCRKASGPS 169 (263)
Q Consensus 93 ~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~~~~ 169 (263)
.++-++|+|+++.. ...+.+...+.....+..+|++|... ......... ...+.+.+++.++..+++...+....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR--~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ--CLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh--ceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 35679999999853 33455555555445567777777653 232333322 36899999999999999988764221
Q ss_pred CCCCCChHH-HHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 170 SGGCCPSEL-KELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 170 ~~~~~~~~~-~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
.... ++.+..|++.++|.+..+..+...+
T Consensus 211 -----~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 211 -----IQLETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp -----CEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred -----CCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1111 3567888999999988665555443
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.90 E-value=1.2e-08 Score=82.90 Aligned_cols=162 Identities=13% Similarity=0.037 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++|+|++|+|||++|+.+++. .... .+.++... +.... .+.........
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~~----------l~~~~------------~g~~~~~~~~~ 102 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSSD----------LVSKW------------MGESEKLVKQL 102 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHHH----------HHTTT------------GGGHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchHH----------Hhhcc------------cchHHHHHHHH
Confidence 3467999999999999999999883 2221 22333211 11100 00011112222
Q ss_pred HHHHhCCceEEEEEeCCCCch-------------hHHHHHHhcc---CCCCCcEEEEEeCchhhhh-hhccCCCccceec
Q 039728 87 LRGHLKDKNYMVVFDDVWKID-------------FWGDVEHALL---DNKKCGRIIVTTRHMNVAK-ACKSSSPVHIHEL 149 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~-------------~~~~l~~~l~---~~~~~~~iliTsR~~~~~~-~~~~~~~~~~~~l 149 (263)
+......++.+|+||+++... ....+...+. ....+..+|.||....... ...... ...+.+
T Consensus 103 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf-~~~i~~ 181 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF-ERRIYI 181 (322)
T ss_dssp HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHC-CEEEEC
T ss_pred HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHccc-CeEEEe
Confidence 222223567899999998421 1234444333 2233455565666533221 111111 156788
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL-PLAIVAVGG 201 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~ 201 (263)
+..+.++-.++++..+.... ..........+++.+.|. +..|..+..
T Consensus 182 ~~p~~~~r~~il~~~~~~~~-----~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 182 PLPDLAARTTMFEINVGDTP-----CVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCCHHHHHHHHHHHHTTCC-----CCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCC-----CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88999999999998876531 111245677888999874 556665554
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.88 E-value=3.2e-08 Score=83.79 Aligned_cols=164 Identities=11% Similarity=0.046 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||+||+.++.. .. ..-|+.+....- ....... ...........
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~l--------~~~~~g~---------~~~~~~~~f~~ 222 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSDL--------VSKWLGE---------SEKLVKNLFQL 222 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC--------------------------CCCTHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHHH--------Hhhhcch---------HHHHHHHHHHH
Confidence 4578999999999999999999983 21 112333322110 0000000 00111122222
Q ss_pred HHHHhCCceEEEEEeCCCCc-------------hhHHHHHHhccCC---CCCcEEEEEeCchhhh-hhhccCCCccceec
Q 039728 87 LRGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALLDN---KKCGRIIVTTRHMNVA-KACKSSSPVHIHEL 149 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~---~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l 149 (263)
. -...+.+|+||+++.. .....+...+... ..+..||.||...... ....... ...+.+
T Consensus 223 a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf-~~~i~i 298 (444)
T 2zan_A 223 A---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF-EKRIYI 298 (444)
T ss_dssp H---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTC-CEEEEC
T ss_pred H---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhc-ceEEEe
Confidence 2 2346789999999843 1123343333321 3345566666554322 1111111 146778
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL-PLAIVAVGGL 202 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~~ 202 (263)
+..+.++..+++...+.... .......+..|++.+.|. +..|..+...
T Consensus 299 ~~P~~~~r~~il~~~l~~~~-----~~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 299 PLPEAHARAAMFRLHLGSTQ-----NSLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp CCCCHHHHHHHHHHHHTTSC-----EECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 88888889999988875431 111246678899999984 5566555543
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.87 E-value=3e-08 Score=81.92 Aligned_cols=100 Identities=7% Similarity=0.003 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCc-------------hhhhhhhccCCCccceeccCCCccchHH
Q 039728 95 NYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRH-------------MNVAKACKSSSPVHIHELETLPPNEAWK 159 (263)
Q Consensus 95 ~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~-------------~~~~~~~~~~~~~~~~~l~~ls~~e~~~ 159 (263)
+.+|+||+++.. ...+.+...+...... .+++++.. ......... +...+.+++++.++..+
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHH
Confidence 469999999843 3445555555443333 34444431 111111211 23568999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHhcC-CChhHHHHHHHH
Q 039728 160 LFCRKASGPSSGGCCPSELKELSQDILGKCE-GLPLAIVAVGGL 202 (263)
Q Consensus 160 ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Pl~l~~~~~~ 202 (263)
++...+.... ....++.+..+++.+. |.|..+..+...
T Consensus 267 il~~~~~~~~-----~~~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 267 ILRIRCEEED-----VEMSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp HHHHHHHHTT-----CCBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9998775421 1222567788888887 888766554443
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.87 E-value=2.3e-08 Score=82.31 Aligned_cols=164 Identities=9% Similarity=-0.004 Sum_probs=89.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.++|+|++|+|||++|+.++.. ... ..+.+++...... ..+........
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~~----------------------~~g~~~~~~~~ 167 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTSK----------------------WVGEGEKMVRA 167 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCCS----------------------STTHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhcc----------------------ccchHHHHHHH
Confidence 34668999999999999999999873 221 2334444321110 00000111111
Q ss_pred HHHHHhCCceEEEEEeCCCCc-------------hhHHHHHHhccCC----CCCcEEEEEeCchhhh-hhhccCCCccce
Q 039728 86 TLRGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALLDN----KKCGRIIVTTRHMNVA-KACKSSSPVHIH 147 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~----~~~~~iliTsR~~~~~-~~~~~~~~~~~~ 147 (263)
.+......++.+|+||+++.. ....++...+... ..+..+|.||...... ....... ...+
T Consensus 168 ~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf-~~~i 246 (357)
T 3d8b_A 168 LFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRL-VKRL 246 (357)
T ss_dssp HHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTC-CEEE
T ss_pred HHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhC-ceEE
Confidence 122222346789999999632 1123444443322 2234555566543222 2222211 1467
Q ss_pred eccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCC-ChhHHHHHHHH
Q 039728 148 ELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEG-LPLAIVAVGGL 202 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~~ 202 (263)
.+...+.++..+++...+.... ....+..+..+++.+.| .+..+..+...
T Consensus 247 ~i~~p~~~~r~~il~~~~~~~~-----~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 247 YIPLPEASARKQIVINLMSKEQ-----CCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp ECCCCCHHHHHHHHHHHHHTSC-----BCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhcC-----CCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8888899999999988764321 11124678889999998 46666666553
No 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=2.4e-08 Score=81.93 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
.++|+|++|+|||++|+.++........+. ..+.++....... ..+...+..+...... ... .. ...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~--~~-----~~~ 127 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVKNFARLTVS----KPS--KH-----DLE 127 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHHHHHHSCCC----CCC--TT-----HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHHHHhhhccc----ccc--hh-----hcc
Confidence 389999999999999999988421111111 2233343332222 2222222222211000 000 00 000
Q ss_pred HHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHh
Q 039728 89 GHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKA 165 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~ 165 (263)
..-...+-++++|+++.. .....+...+.......++|+++.... ........ ...+.+.+++.++...++...+
T Consensus 128 ~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR--~~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 128 NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ--CSKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp HSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH--SEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc--CceEEeCCCCHHHHHHHHHHHH
Confidence 111234579999999843 334555555554455666777665432 22222221 2578899999999999999876
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 166 SGPSSGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
.... ....++.++.|++.++|+|..+..+
T Consensus 206 ~~~~-----~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 206 EQEN-----VKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HTTT-----CCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHhC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4331 1122567889999999999865443
No 35
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.85 E-value=7.5e-08 Score=80.19 Aligned_cols=161 Identities=10% Similarity=0.005 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+.++|+|++|+|||++|+.++.. ... ..+.+++...... .. +.........+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~--~~--------------------g~~~~~~~~~~ 200 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK--YV--------------------GEGEKLVRALF 200 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC-----------------------------CHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc--cc--------------------chHHHHHHHHH
Confidence 468999999999999999999873 221 2234443332110 00 00011111112
Q ss_pred HHHhCCceEEEEEeCCCCc-------------hhHHHHHHhcc---C-CCCCcEEEEEeCchhhh-hhhccCCCccceec
Q 039728 88 RGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALL---D-NKKCGRIIVTTRHMNVA-KACKSSSPVHIHEL 149 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~---~-~~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l 149 (263)
.......+.+|+||+++.. .....+...+. . ......||.||...... ....... ...+.+
T Consensus 201 ~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~-~~~i~i 279 (389)
T 3vfd_A 201 AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF-IKRVYV 279 (389)
T ss_dssp HHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTC-CEEEEC
T ss_pred HHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCc-ceEEEc
Confidence 2222345679999999743 11122222222 1 12234555566553322 1111111 146888
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChh-HHHHHHH
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPL-AIVAVGG 201 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~~ 201 (263)
...+.++..+++...+.... .......+..+++.+.|..- .+..+..
T Consensus 280 ~~p~~~~r~~il~~~~~~~~-----~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 280 SLPNEETRLLLLKNLLCKQG-----SPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CCCCHHHHHHHHHHHHTTSC-----CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88999999999988875431 11224577889999988644 6655554
No 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.2e-08 Score=88.13 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=90.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++|+.+++. . .+ .++.++........ .+...+........ ...... ....
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~---~~~~~~----~~~~- 141 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDVRSKT-LLNAGVKNALDNMS---VVGYFK----HNEE- 141 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSCCCHH-HHHHTGGGGTTBCC---STTTTT----C----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCcchHH-HHHHHHHHHhcccc---HHHHHh----hhhh-
Confidence 4579999999999999999999983 3 22 23455554443332 22221111111000 000000 0000
Q ss_pred HHHHhCCceEEEEEeCCCCch-----hHHHHHHhccCCCCCcEEEEEeCchh--hhhhhccCCCccceeccCCCccchHH
Q 039728 87 LRGHLKDKNYMVVFDDVWKID-----FWGDVEHALLDNKKCGRIIVTTRHMN--VAKACKSSSPVHIHELETLPPNEAWK 159 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~-----~~~~l~~~l~~~~~~~~iliTsR~~~--~~~~~~~~~~~~~~~l~~ls~~e~~~ 159 (263)
......++.+||+|+++... .+..+...+... +..+|+++.... ..... ......+.+.+++.++..+
T Consensus 142 -~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l--~~r~~~i~f~~~~~~~~~~ 216 (516)
T 1sxj_A 142 -AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPF--DRVCLDIQFRRPDANSIKS 216 (516)
T ss_dssp --CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGG--TTTSEEEECCCCCHHHHHH
T ss_pred -hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhh--HhceEEEEeCCCCHHHHHH
Confidence 00113567899999997421 224444443322 334555554422 11111 2223578999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 160 LFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 160 ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
++...+.... .... ++.+..|++.++|.+..+..+...+
T Consensus 217 ~L~~i~~~~~--~~i~---~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 217 RLMTIAIREK--FKLD---PNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp HHHHHHHHHT--CCCC---TTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred HHHHHHHHcC--CCCC---HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9887654321 0011 3457788999999765444433333
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.85 E-value=3.9e-08 Score=80.31 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=89.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.++|+|++|+|||++|+.+++. .... .+.+++..... ......
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~----------------------------~~~~~~ 99 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK----------------------------SGDLAA 99 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS----------------------------HHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc----------------------------hhHHHH
Confidence 34457899999999999999999873 2222 22333322111 011111
Q ss_pred HHHHHhCCceEEEEEeCCCCc--hhHHHHHHhccCCC------------------CCcEEEEEeCchhh-hhhhccCCCc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNK------------------KCGRIIVTTRHMNV-AKACKSSSPV 144 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~------------------~~~~iliTsR~~~~-~~~~~~~~~~ 144 (263)
.+.. ..++.+|+||+++.. .....+...+.... ++..+|.+|..... ........ .
T Consensus 100 ~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~-~ 176 (338)
T 3pfi_A 100 ILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRF-G 176 (338)
T ss_dssp HHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTC-S
T ss_pred HHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhc-C
Confidence 1111 235578999999843 23333443333221 12455555554322 22222221 1
Q ss_pred cceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 039728 145 HIHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGL 202 (263)
Q Consensus 145 ~~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 202 (263)
..+.+.+++.++...++........ ....++.+..+++.+.|+|..+..+...
T Consensus 177 ~~i~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 177 MQFRLEFYKDSELALILQKAALKLN-----KTCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTT-----CEECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEeeCCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999988765321 1223567788889999999766655544
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.84 E-value=3.6e-08 Score=80.05 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=88.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||+||+.+++. ....-..+++++.. .....+...+... .....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~------------~~~~~--- 92 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG------------TINEF--- 92 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT------------CHHHH---
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC------------cHHHH---
Confidence 3567899999999999999999883 32222234565532 2233333332211 11111
Q ss_pred HHHHhCCceEEEEEeCCCCch----hHHHHHHhccCC-CCCcEEEEEeCchhh---------hhhhccCCCccceeccCC
Q 039728 87 LRGHLKDKNYMVVFDDVWKID----FWGDVEHALLDN-KKCGRIIVTTRHMNV---------AKACKSSSPVHIHELETL 152 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~----~~~~l~~~l~~~-~~~~~iliTsR~~~~---------~~~~~~~~~~~~~~l~~l 152 (263)
..... ++.+|++|+++... ..+.+...+... ..+..+|+|+..... ...+... ..+.+++
T Consensus 93 -~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~---~~i~l~~- 166 (324)
T 1l8q_A 93 -RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG---ILVEIEL- 166 (324)
T ss_dssp -HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS---EEEECCC-
T ss_pred -HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc---eEEEeCC-
Confidence 22222 35699999997432 223333332211 234567777764321 1111111 4688999
Q ss_pred CccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 153 PPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 153 s~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
+.++..+++...+.... . ...++.+..+++.+ |+...+.-+.
T Consensus 167 ~~~e~~~il~~~~~~~~--~---~l~~~~l~~l~~~~-g~~r~l~~~l 208 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFN--L---ELRKEVIDYLLENT-KNVREIEGKI 208 (324)
T ss_dssp CHHHHHHHHHHHHHHTT--C---CCCHHHHHHHHHHC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHhC-CCHHHHHHHH
Confidence 99999999988874321 1 11246678888888 8876544433
No 39
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.4e-08 Score=83.74 Aligned_cols=154 Identities=13% Similarity=0.046 Sum_probs=84.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-|+++||||+|||.||++++.. .... .+.++.....+ ...+.+...+...
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s----------------------k~vGese~~vr~l 233 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ----------------------KYIGEGSRMVREL 233 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC----------------------SSTTHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc----------------------cccchHHHHHHHH
Confidence 3566899999999999999999983 3322 23333322111 0011111122222
Q ss_pred HHHHhCCceEEEEEeCCCCch----------------hHHHHHHhccCC--CCCcEEEEEeCchhhh-hhh-ccCCCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID----------------FWGDVEHALLDN--KKCGRIIVTTRHMNVA-KAC-KSSSPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~----------------~~~~l~~~l~~~--~~~~~iliTsR~~~~~-~~~-~~~~~~~~ 146 (263)
+...-...+++|++|++|... .+.+++..+... ..+..||.||...... +.. ....-...
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~ 313 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRK 313 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCE
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceE
Confidence 222224578999999998310 133444444332 3344556666554322 111 11111267
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
++++.-+.++-.++|+.+...... ... -....+++.+.|+-
T Consensus 314 I~i~lPd~~~R~~Il~~~~~~~~l--~~d----vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 314 IEFPPPSVAARAEILRIHSRKMNL--TRG----INLRKVAEKMNGCS 354 (405)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSBC--CSS----CCHHHHHHHCCSCC
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCC--Ccc----CCHHHHHHHCCCCC
Confidence 888888989999999877754321 111 12567788888764
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.81 E-value=4.6e-08 Score=78.35 Aligned_cols=162 Identities=10% Similarity=-0.028 Sum_probs=84.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++|+.++.. ... ..+.+++..... . ..+.........
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~--------------~--------~~~~~~~~~~~~ 105 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTS--------------K--------YVGDGEKLVRAL 105 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSS--------------S--------SCSCHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhh--------------c--------ccchHHHHHHHH
Confidence 3568999999999999999999883 221 123344432110 0 000011111111
Q ss_pred HHHHhCCceEEEEEeCCCCch-------------hHHHHHHhccCC-----CCCcEEEEEeCchhhh-hhhccCCCccce
Q 039728 87 LRGHLKDKNYMVVFDDVWKID-------------FWGDVEHALLDN-----KKCGRIIVTTRHMNVA-KACKSSSPVHIH 147 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~-------------~~~~l~~~l~~~-----~~~~~iliTsR~~~~~-~~~~~~~~~~~~ 147 (263)
+.......+.+|+||+++... ....+...+... ..+..+|.||...... ....... ...+
T Consensus 106 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~-~~~i 184 (297)
T 3b9p_A 106 FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF-TKRV 184 (297)
T ss_dssp HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC-CEEE
T ss_pred HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC-CeEE
Confidence 222223467899999997321 112232222211 1234556666653211 1111111 1467
Q ss_pred eccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChh-HHHHHHH
Q 039728 148 ELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPL-AIVAVGG 201 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~~ 201 (263)
.++..+.++..+++...+.... .......+..+++.+.|++- .+..+..
T Consensus 185 ~~~~p~~~~r~~il~~~~~~~~-----~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 185 YVSLPDEQTRELLLNRLLQKQG-----SPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp ECCCCCHHHHHHHHHHHHGGGS-----CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777788888888877664321 11124567889999999875 6655544
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.81 E-value=3.7e-08 Score=80.93 Aligned_cols=161 Identities=14% Similarity=0.009 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+-++|+|++|+|||+||+.+++. .... .+.++.. . +..... +.........+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~--------l~~~~~--------g~~~~~~~~~f 136 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D--------LVSKWM--------GESEKLVKQLF 136 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H--------HHSCC-----------CHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H--------Hhhhhc--------chHHHHHHHHH
Confidence 456899999999999999999983 3211 2233221 1 111000 00111111222
Q ss_pred HHHhCCceEEEEEeCCCCch-------------hHHHHHHhccC---CCCCcEEEEEeCchhhh-hhhccCCCccceecc
Q 039728 88 RGHLKDKNYMVVFDDVWKID-------------FWGDVEHALLD---NKKCGRIIVTTRHMNVA-KACKSSSPVHIHELE 150 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~-------------~~~~l~~~l~~---~~~~~~iliTsR~~~~~-~~~~~~~~~~~~~l~ 150 (263)
......++.+|+||+++... ...++...+.. ...+..+|.||...... ...... -...+.++
T Consensus 137 ~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR-f~~~i~i~ 215 (355)
T 2qp9_X 137 AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR-FERRIYIP 215 (355)
T ss_dssp HHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT-CCEEEECC
T ss_pred HHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc-cCEEEEeC
Confidence 22223567899999998422 13334433322 23344555566544221 111111 11567888
Q ss_pred CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 039728 151 TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL-PLAIVAVGG 201 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~ 201 (263)
..+.++..+++..++.... .......+..|++.+.|. +..|..+..
T Consensus 216 ~P~~~~r~~il~~~l~~~~-----~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 216 LPDLAARTTMFEINVGDTP-----SVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CCCHHHHHHHHHHHHTTSC-----BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8899999999998875431 111245678899999984 555655554
No 42
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.4e-08 Score=83.47 Aligned_cols=155 Identities=11% Similarity=0.031 Sum_probs=85.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+-|+++||||+|||+||+++++. .... .+.++.....+ ...+.+...+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s----------------------k~~Gese~~ir~ 265 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD----------------------KYIGESARIIRE 265 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC----------------------SSSSHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc----------------------ccchHHHHHHHH
Confidence 34577899999999999999999983 3322 23344332211 001111112222
Q ss_pred HHHHHhCCceEEEEEeCCCCc----------------hhHHHHHHhccCC--CCCcEEEEEeCchhhhhhhccC-C-Ccc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKI----------------DFWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKSS-S-PVH 145 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~~-~-~~~ 145 (263)
.+...-...+++|++|++|.. ..+..++..+... ..+..||.||.........-.. . -..
T Consensus 266 ~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~ 345 (437)
T 4b4t_L 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDR 345 (437)
T ss_dssp HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEE
T ss_pred HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccce
Confidence 222233457899999999831 0133444444332 2345666677654433211111 0 114
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
.++++.-+.++-.++|+.++..... ... -....+++.+.|+-
T Consensus 346 ~I~i~lPd~~~R~~Il~~~~~~~~~--~~d----~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 346 KVEIPLPNEAGRLEIFKIHTAKVKK--TGE----FDFEAAVKMSDGFN 387 (437)
T ss_dssp EECCCCCCHHHHHHHHHHHHHTSCB--CSC----CCHHHHHHTCCSCC
T ss_pred eeecCCcCHHHHHHHHHHHhcCCCC--Ccc----cCHHHHHHhCCCCC
Confidence 6888888888888888877654311 111 12466788888764
No 43
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.73 E-value=4.4e-08 Score=81.91 Aligned_cols=155 Identities=13% Similarity=0.009 Sum_probs=83.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+-|+++||+|+|||.||++++.. .... .+.++...-.+ ...+.....+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s----------------------k~vGesek~ir~ 293 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ----------------------KYVGEGARMVRE 293 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC----------------------CSSSHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc----------------------ccCCHHHHHHHH
Confidence 34677899999999999999999983 3322 23333322111 001111112222
Q ss_pred HHHHHhCCceEEEEEeCCCCch----------------hHHHHHHhccCC--CCCcEEEEEeCchhhh-hhhc-cCCCcc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID----------------FWGDVEHALLDN--KKCGRIIVTTRHMNVA-KACK-SSSPVH 145 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~----------------~~~~l~~~l~~~--~~~~~iliTsR~~~~~-~~~~-~~~~~~ 145 (263)
.+...-...+++|++|++|... .+..++..+... ..+..+|.||.....+ ..+. ...-..
T Consensus 294 lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~ 373 (467)
T 4b4t_H 294 LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDR 373 (467)
T ss_dssp HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCE
T ss_pred HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccE
Confidence 2222334578999999998310 122333333322 2344455566544322 1111 101126
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
.++++.-+.++-.++|+.++..... ... -....|++.|.|+-
T Consensus 374 ~I~i~lPd~~~R~~Ilk~~l~~~~l--~~d----vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 374 KVEFSLPDLEGRANIFRIHSKSMSV--ERG----IRWELISRLCPNST 415 (467)
T ss_dssp EECCCCCCHHHHHHHHHHHHTTSCB--CSS----CCHHHHHHHCCSCC
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCC--CCC----CCHHHHHHHCCCCC
Confidence 7888888888999999877754321 111 12466778888763
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.73 E-value=1e-08 Score=76.40 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+.++|+|++|+|||++++.+++.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999873
No 45
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.72 E-value=1.4e-07 Score=74.01 Aligned_cols=160 Identities=11% Similarity=-0.010 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+-++|+|++|+||||+|+.++.. .... .+.++...-.. . ..+.........+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--------------~--------~~~~~~~~~~~~~ 97 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--------------M--------FVGVGASRVRDMF 97 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT--------------S--------CCCCCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH--------------H--------hhhhhHHHHHHHH
Confidence 345889999999999999999873 2211 23333322110 0 0001112222333
Q ss_pred HHHhCCceEEEEEeCCCCc----------------hhHHHHHHhccCC--CCCcEEEEEeCchhhh-hhhccCCC-ccce
Q 039728 88 RGHLKDKNYMVVFDDVWKI----------------DFWGDVEHALLDN--KKCGRIIVTTRHMNVA-KACKSSSP-VHIH 147 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~-~~~~~~~~-~~~~ 147 (263)
.......+.++++|+++.. ..+..+...+... ..+..+|.||...... ........ ...+
T Consensus 98 ~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i 177 (257)
T 1lv7_A 98 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177 (257)
T ss_dssp HHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEE
T ss_pred HHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEE
Confidence 3333456789999998521 1123333333221 2344566666554322 11111011 1456
Q ss_pred eccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCC-ChhHHHHHH
Q 039728 148 ELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEG-LPLAIVAVG 200 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~ 200 (263)
.++..+.++-.+++........ ... +.....++..+.| ++.-+..+.
T Consensus 178 ~i~~P~~~~r~~il~~~~~~~~--l~~----~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 178 VVGLPDVRGREQILKVHMRRVP--LAP----DIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSC--BCT----TCCHHHHHHTCTTCCHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhcCC--CCc----cccHHHHHHHcCCCCHHHHHHHH
Confidence 7777777888888877764321 111 1123456777777 666555443
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.72 E-value=2.2e-07 Score=74.57 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+.++|+|++|+|||++|+.++.. ... -++.+. ... +...+.... .......
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~~~----l~~~~~g~~------------~~~~~~~ 100 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GPE----LLTMWFGES------------EANVREI 100 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----HHH----HHHHHHTTC------------TTHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----hHH----HHhhhcCch------------HHHHHHH
Confidence 4567899999999999999999983 321 122222 111 122221110 0112222
Q ss_pred HHHHhCCceEEEEEeCCCCch----------------hHHHHHHhccCC--CCCcEEEEEeCchhhhh-hhccCCC-ccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKID----------------FWGDVEHALLDN--KKCGRIIVTTRHMNVAK-ACKSSSP-VHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~----------------~~~~l~~~l~~~--~~~~~iliTsR~~~~~~-~~~~~~~-~~~ 146 (263)
+.......+.+++||+++... ...++...+... ..+..||.||....... ....... ...
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~ 180 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceE
Confidence 333333567899999998311 134455444322 23456666776553322 1111001 146
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChh
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPL 194 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 194 (263)
+.++..+.++-.+++...+.... ..... ....+++.+.|+|-
T Consensus 181 i~i~~p~~~~r~~il~~~l~~~~--~~~~~----~~~~la~~~~g~sg 222 (301)
T 3cf0_A 181 IYIPLPDEKSRVAILKANLRKSP--VAKDV----DLEFLAKMTNGFSG 222 (301)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSC--BCSSC----CHHHHHHTCSSCCH
T ss_pred EecCCcCHHHHHHHHHHHHccCC--CCccc----hHHHHHHHcCCCCH
Confidence 88899999999999988775432 11111 23456667777764
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.71 E-value=2.1e-07 Score=75.52 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=89.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
....+++++|++|+|||++|+.+++. .. ...++++.... . ...+...+.......
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~~~~~~~~------------------ 100 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPLTNFASAA------------------ 100 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHHHHHHHBC------------------
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHHHHHHhhc------------------
Confidence 34467888999999999999999883 32 12345554332 2 222222222221110
Q ss_pred HHHHHhCCceEEEEEeCCCCch---hHHHHHHhccCCCCCcEEEEEeCchhh-hhhhccCCCccceeccCCCccchHHH-
Q 039728 86 TLRGHLKDKNYMVVFDDVWKID---FWGDVEHALLDNKKCGRIIVTTRHMNV-AKACKSSSPVHIHELETLPPNEAWKL- 160 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~---~~~~l~~~l~~~~~~~~iliTsR~~~~-~~~~~~~~~~~~~~l~~ls~~e~~~l- 160 (263)
...+++.++|+|+++... ..+.+...+.....++.+|+||..... ...... +...+.+.+++.++..++
T Consensus 101 ----~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 101 ----SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS--RCRVITFGQPTDEDKIEMM 174 (324)
T ss_dssp ----CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH--HSEEEECCCCCHHHHHHHH
T ss_pred ----ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh--hCcEEEeCCCCHHHHHHHH
Confidence 012367899999999643 444455444443456678877776432 111111 125788999998874333
Q ss_pred ------HHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 039728 161 ------FCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL 203 (263)
Q Consensus 161 ------l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 203 (263)
+...+.... ...+. .+.+..+++.++|++..+......+
T Consensus 175 ~~~~~~l~~~~~~~~--~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 175 KQMIRRLTEICKHEG--IAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHHHHHHHHHHT--CCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 222222110 00010 2677788888998877544443333
No 48
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=2.3e-08 Score=83.57 Aligned_cols=154 Identities=9% Similarity=-0.012 Sum_probs=81.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+-|+++||||+|||.||++++.. .... .+.++...-.+ ...+.....+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~----------------------~~vGese~~ir~ 265 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ----------------------MYIGEGAKLVRD 265 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS----------------------SCSSHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh----------------------cccchHHHHHHH
Confidence 34677899999999999999999983 3222 22333322111 000111111111
Q ss_pred HHHHHhCCceEEEEEeCCCCc----------------hhHHHHHHhccCCC--CCcEEEEEeCchhhhhhhccC--CCcc
Q 039728 86 TLRGHLKDKNYMVVFDDVWKI----------------DFWGDVEHALLDNK--KCGRIIVTTRHMNVAKACKSS--SPVH 145 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~~~~--~~~~iliTsR~~~~~~~~~~~--~~~~ 145 (263)
.+...-...+++|++|++|.. ..+..++..+.... .+..||.||.........-.. .-..
T Consensus 266 lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~ 345 (434)
T 4b4t_M 266 AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDR 345 (434)
T ss_dssp HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEE
T ss_pred HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeE
Confidence 222222346899999999720 01234444444332 344555566654433211100 0114
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL 192 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 192 (263)
.++++.-+.++-.++|+.+....... .. -....+++.+.|+
T Consensus 346 ~I~i~lPd~~~R~~Il~~~~~~~~~~--~d----vdl~~lA~~t~G~ 386 (434)
T 4b4t_M 346 KIEFPLPSEDSRAQILQIHSRKMTTD--DD----INWQELARSTDEF 386 (434)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHSCBC--SC----CCHHHHHHHCSSC
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCC--Cc----CCHHHHHHhCCCC
Confidence 68888888888888887766433111 11 1246678888875
No 49
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.68 E-value=6.9e-08 Score=79.95 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-|+++||||+|||.||++++.. .... .+.++...-.+ ...+.+...+...
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e--~~~~---fi~v~~s~l~s----------------------k~vGesek~ir~l 267 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ--TSAT---FLRIVGSELIQ----------------------KYLGDGPRLCRQI 267 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH--HTCE---EEEEESGGGCC----------------------SSSSHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH--hCCC---EEEEEHHHhhh----------------------ccCchHHHHHHHH
Confidence 4567899999999999999999983 3322 22333222110 0011111112222
Q ss_pred HHHHhCCceEEEEEeCCCCc----------------hhHHHHHHhccC--CCCCcEEEEEeCchhhhhhhccC--CCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKI----------------DFWGDVEHALLD--NKKCGRIIVTTRHMNVAKACKSS--SPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~~--~~~~~~iliTsR~~~~~~~~~~~--~~~~~ 146 (263)
+...-...+++|++|++|.. ..+..++..+.. ...+..||.||.....+...-.. .-...
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~ 347 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRK 347 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEE
T ss_pred HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEE
Confidence 22222357899999998821 112333333322 23344556666654433221111 11145
Q ss_pred eeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 147 HELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
++++.-+.++-.++|+.++..... ... -....+++.+.|+-
T Consensus 348 I~v~lPd~~~R~~Il~~~l~~~~l--~~d----vdl~~LA~~T~GfS 388 (437)
T 4b4t_I 348 ILFENPDLSTKKKILGIHTSKMNL--SED----VNLETLVTTKDDLS 388 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCB--CSC----CCHHHHHHHCCSCC
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCC--CCc----CCHHHHHHhCCCCC
Confidence 778888888888999887754321 111 12466777887763
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.7e-07 Score=76.65 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=88.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHHH
Q 039728 11 VAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRG 89 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (263)
++++|++|+||||+++.++.... ...+. .+..++....... ....+.+..+.... .
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~-~~ir~~i~~~~~~~---------------------~ 105 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI-DVVRNQIKDFASTR---------------------Q 105 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH-HHHHTHHHHHHHBC---------------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH-HHHHHHHHHHHhhc---------------------c
Confidence 89999999999999999988321 11111 1122222221121 11112222111100 0
Q ss_pred HhCCceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCchh-hhhhhccCCCccceeccCCCccchHHHHHHHhc
Q 039728 90 HLKDKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHMN-VAKACKSSSPVHIHELETLPPNEAWKLFCRKAS 166 (263)
Q Consensus 90 ~l~~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~~~~ 166 (263)
.+.+.+-++|+|+++. ....+.+...+........+++++.... ........ ...+.+.+++.++..+.+...+.
T Consensus 106 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR--~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ--CTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh--ceeEeccCCCHHHHHHHHHHHHH
Confidence 0123467899999974 3344555555554455666777665432 22222222 25788999999999998887763
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 039728 167 GPSSGGCCPSELKELSQDILGKCEGLPLAIVAV 199 (263)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 199 (263)
... ....+.....+++.++|.+.-+..+
T Consensus 184 ~~~-----~~i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 184 HEK-----LKLSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp TTT-----CCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 221 1112456778889999988754433
No 51
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=6.2e-08 Score=80.90 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+-++++||||+|||++|+++++. .... .+.++.....+ ...+.....+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~----------------------~~~Ge~e~~ir~ 256 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVH----------------------KYLGEGPRMVRD 256 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCC----------------------SSCSHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhc----------------------cccchhHHHHHH
Confidence 34567899999999999999999983 3322 23344332111 001111112222
Q ss_pred HHHHHhCCceEEEEEeCCCC------------c----hhHHHHHHhccCC--CCCcEEEEEeCchhhh-hhhc-cCCCcc
Q 039728 86 TLRGHLKDKNYMVVFDDVWK------------I----DFWGDVEHALLDN--KKCGRIIVTTRHMNVA-KACK-SSSPVH 145 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~------------~----~~~~~l~~~l~~~--~~~~~iliTsR~~~~~-~~~~-~~~~~~ 145 (263)
.+...-...++++++|++|. . ..+.+++..+... ..+..||.||...... +... ...-..
T Consensus 257 lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~ 336 (428)
T 4b4t_K 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDR 336 (428)
T ss_dssp HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEE
T ss_pred HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceE
Confidence 22222245789999999971 0 1234444444322 3344566666654322 1111 110114
Q ss_pred ceeccCCCc-cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 146 IHELETLPP-NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 146 ~~~l~~ls~-~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
.++++.++. ++-..+|+.+..+.. .... -....+++.+.|+-
T Consensus 337 ~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~----~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 337 KIEFPSLRDRRERRLIFGTIASKMS--LAPE----ADLDSLIIRNDSLS 379 (428)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHSSC--BCTT----CCHHHHHHHTTTCC
T ss_pred EEEcCCCCCHHHHHHHHHHHhcCCC--CCcc----cCHHHHHHHCCCCC
Confidence 577766644 455566666554321 1111 12566777887763
No 52
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=2.2e-07 Score=74.48 Aligned_cols=131 Identities=15% Similarity=0.023 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc-cccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDG-LKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
.+..+++||+|+|||++|..+++... ....++...+++........+..++++..+...
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~-------------------- 77 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS-------------------- 77 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSC--------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhc--------------------
Confidence 67899999999999999999976311 111233344444322111122223333333111
Q ss_pred HHHHhCCceEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCch-hhhhhhccCCCccceeccCCCccchHHHHHH
Q 039728 87 LRGHLKDKNYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRHM-NVAKACKSSSPVHIHELETLPPNEAWKLFCR 163 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~~ 163 (263)
-..+++-++|+|+++. ....+.+...+...++.+.+|++|.+. .+....... .+++.+++.++..+.+.+
T Consensus 78 ---p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR----~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 78 ---PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR----VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp ---CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT----SEEEECCCCHHHHHHHHH
T ss_pred ---cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce----eEeCCCCCHHHHHHHHHH
Confidence 0023456889999984 445677887777777777777666543 444444443 889999999999999988
Q ss_pred Hh
Q 039728 164 KA 165 (263)
Q Consensus 164 ~~ 165 (263)
..
T Consensus 151 ~~ 152 (305)
T 2gno_A 151 KI 152 (305)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.60 E-value=1.9e-07 Score=79.78 Aligned_cols=162 Identities=11% Similarity=0.047 Sum_probs=87.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++|+|++|+|||++|+.+++. ... ..+.+++.. +... ..+.........
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~~--------------l~~~--------~~g~~~~~~~~~ 289 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPE--------------IMSK--------LAGESESNLRKA 289 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHHH--------------HHTS--------CTTHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEchH--------------hhhh--------hcchhHHHHHHH
Confidence 4456899999999999999999873 221 223444311 1110 001112223333
Q ss_pred HHHHhCCceEEEEEeCCCCc-------------hhHHHHHHhccCC--CCCcEEEEEeCchhhh-hhhccCCC-ccceec
Q 039728 87 LRGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALLDN--KKCGRIIVTTRHMNVA-KACKSSSP-VHIHEL 149 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~-~~~~~~~~-~~~~~l 149 (263)
+.....+++.+|+||+++.. .....+...+... ..+..+|.||...... ........ ...+.+
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i 369 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEEC
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEe
Confidence 44444567789999999521 1223344444322 2344555566654322 22211111 146889
Q ss_pred cCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 039728 150 ETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGL-PLAIVAVGG 201 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~ 201 (263)
...+.++-.++|+.+...... . .......+++.+.|+ +..+..+..
T Consensus 370 ~~P~~~eR~~IL~~~~~~~~l--~----~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 370 GIPDATGRLEILQIHTKNMKL--A----DDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp CCCCHHHHHHHHHHHTTTSCB--C----TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCC--c----chhhHHHHHHHccCCcHHHHHHHHH
Confidence 999999999999988754311 1 112245677777775 555555443
No 54
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.55 E-value=7e-07 Score=75.75 Aligned_cols=179 Identities=10% Similarity=0.042 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
+-++|+|++|+|||+||+.++.. .... .+.++....... ..+.........+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~----------------------~~g~~~~~~r~lf~ 102 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL----------------------FVGVGAARVRDLFA 102 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC----------------------CTTHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH----------------------HhcccHHHHHHHHH
Confidence 45889999999999999999983 2211 223443321110 00001112223333
Q ss_pred HHhCCceEEEEEeCCCCc----------------hhHHHHHHhccC--CCCCcEEEEEeCchhhhh-hhccCCC-cccee
Q 039728 89 GHLKDKNYMVVFDDVWKI----------------DFWGDVEHALLD--NKKCGRIIVTTRHMNVAK-ACKSSSP-VHIHE 148 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~~--~~~~~~iliTsR~~~~~~-~~~~~~~-~~~~~ 148 (263)
......+.+|+||+++.. ..+.++...+.. ...+..||.||....... ......+ ...+.
T Consensus 103 ~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~ 182 (476)
T 2ce7_A 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182 (476)
T ss_dssp HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEE
T ss_pred HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEee
Confidence 334457899999999632 123344433321 123455666666654332 1111011 13677
Q ss_pred ccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh-hHHHHHHHH-----hccC--CCCHHHHHHHHHHh
Q 039728 149 LETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP-LAIVAVGGL-----LSTK--NRVVSEWKKLFDRL 220 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~~~~~-----l~~~--~~~~~~~~~~~~~~ 220 (263)
++..+.++-.++++.+...... ... .....+++.+.|+. .-|..+... .+.. .-+...+..++.+.
T Consensus 183 i~~Pd~~~R~~Il~~~~~~~~l--~~~----v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 183 VDPPDMLGRKKILEIHTRNKPL--AED----VNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCB--CTT----CCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCCC--cch----hhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 8888888888888777654311 101 11455788888887 333332221 1111 22455666666654
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.51 E-value=1.4e-06 Score=69.57 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+.++|+||+|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568899999999999999999983
No 56
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.50 E-value=1.6e-07 Score=84.17 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+-|+++||+|+|||+||++++.. .... .+.++..+ +... ..+.....+..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~--------------l~sk--------~~gese~~lr~ 288 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE--------------IMSK--------LAGESESNLRK 288 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH--------------HHSS--------CTTHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH--------------hhcc--------cchHHHHHHHH
Confidence 34577999999999999999999984 3222 23333221 1111 11112223334
Q ss_pred HHHHHhCCceEEEEEeCCCCc-------------hhHHHHHHhccCCC--CCcEEEEEeCchhhh-hhhccCCC-cccee
Q 039728 86 TLRGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALLDNK--KCGRIIVTTRHMNVA-KACKSSSP-VHIHE 148 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~~--~~~~iliTsR~~~~~-~~~~~~~~-~~~~~ 148 (263)
.+.......+.+|+||++|.. ....+++..+.... .+..||.+|...... .......+ .+.++
T Consensus 289 lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~ 368 (806)
T 3cf2_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVD 368 (806)
T ss_dssp HHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEE
T ss_pred HHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEe
Confidence 444444567899999999731 11233333332222 233445555544322 22111001 15688
Q ss_pred ccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 149 LETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 149 l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
++..+.++-.++|+.+..... .. ..-....+++.+.|+.
T Consensus 369 i~~Pd~~~R~~IL~~~l~~~~--~~----~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 369 IGIPDATGRLEILQIHTKNMK--LA----DDVDLEQVANETHGHV 407 (806)
T ss_dssp CCCCCHHHHHHHHHHTCSSSE--EC----TTCCHHHHHHHCCSCC
T ss_pred cCCCCHHHHHHHHHHHhcCCC--CC----cccCHHHHHHhcCCCC
Confidence 888888888888887764431 11 1123566888888774
No 57
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.49 E-value=2.9e-07 Score=68.03 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....++|+|++|+|||||++.++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999884
No 58
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.45 E-value=3.9e-07 Score=64.84 Aligned_cols=91 Identities=13% Similarity=-0.031 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
...|.|+|++|+|||++|+.+.+.. .....+ .+ +++....+. . .....+
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~-~~~~~~-~v-~~~~~~~~~-------------------------~---~~~~~~ 72 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG-RNAQGE-FV-YRELTPDNA-------------------------P---QLNDFI 72 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS-TTTTSC-CE-EEECCTTTS-------------------------S---CHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC-CccCCC-EE-EECCCCCcc-------------------------h---hhhcHH
Confidence 3457899999999999999998732 111222 23 665543221 0 001111
Q ss_pred HHHhCCceEEEEEeCCCCc--hhHHHHHHhccCCCCCcEEEEEeCch
Q 039728 88 RGHLKDKNYMVVFDDVWKI--DFWGDVEHALLDNKKCGRIIVTTRHM 132 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~ 132 (263)
... ..-+|+||+++.. .....+...+.......++|.||...
T Consensus 73 ~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 73 ALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp HHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred HHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 111 2246889999843 33445555554445566787777653
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.43 E-value=7.9e-07 Score=71.56 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
...++|+|++|+|||++|+.++.. ........+.+++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTE 85 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccc
Confidence 357999999999999999999883 322222345566544
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.42 E-value=2.2e-05 Score=63.86 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=46.1
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHHHHh------c-cCCCCHHHHHHHHH
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVGGLL------S-TKNRVVSEWKKLFD 218 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l------~-~~~~~~~~~~~~~~ 218 (263)
...+++.+.++..+++.+...... .....+.+..|++.++|.|..+.-+...+ . ...-+.+....++.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 478999999999999988764221 11224678899999999998665544433 1 12234555566666
Q ss_pred Hhc
Q 039728 219 RLG 221 (263)
Q Consensus 219 ~~~ 221 (263)
.+.
T Consensus 249 ~~~ 251 (334)
T 1in4_A 249 VLN 251 (334)
T ss_dssp HHT
T ss_pred HhC
Confidence 543
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.41 E-value=2.4e-08 Score=78.81 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.++|+|++|+|||++|+.++..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999999883
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.39 E-value=2e-07 Score=66.64 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....++|+|++|+|||||++.++.. ....-..++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~--~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ--ALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH--HHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEcHHH
Confidence 3567899999999999999999884 222211256666543
No 63
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.37 E-value=4.3e-07 Score=68.40 Aligned_cols=36 Identities=31% Similarity=0.257 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEe
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTV 46 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~ 46 (263)
+.++|+|++|+|||+||..+++. .......++|+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 78999999999999999999883 3333334556654
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.36 E-value=2.9e-06 Score=68.08 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+.++|+|++|+|||++|+.+++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999883
No 65
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.26 E-value=3.6e-06 Score=65.69 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=74.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHHHH
Q 039728 11 VAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGH 90 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (263)
++|+|++|+|||||++.++.. .. ...+.++.. . +.. .. ...........++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------~----~~~----~~--------~~~~~~~i~~~~~~~ 104 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------D----FVE----MF--------VGVGAARVRDLFETA 104 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------H----HHH----SC--------TTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------H----HHH----HH--------hhHHHHHHHHHHHHH
Confidence 899999999999999999983 32 122333321 1 000 00 000011111222222
Q ss_pred hCCceEEEEEeCCCCc------------h----hHHHHHHhccCCC--CCcEEEEEeCchhhhhh-hccC-CCccceecc
Q 039728 91 LKDKNYMVVFDDVWKI------------D----FWGDVEHALLDNK--KCGRIIVTTRHMNVAKA-CKSS-SPVHIHELE 150 (263)
Q Consensus 91 l~~~~~LlvlD~~~~~------------~----~~~~l~~~l~~~~--~~~~iliTsR~~~~~~~-~~~~-~~~~~~~l~ 150 (263)
....+.++++|+++.. . .+.++...+.... ....++.++........ .... .-...+.++
T Consensus 105 ~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~ 184 (254)
T 1ixz_A 105 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 184 (254)
T ss_dssp TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeC
Confidence 2345689999998521 0 1233333333222 22234445555443321 1111 111467888
Q ss_pred CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 151 TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
..+.++-.++++....... ... +.....+++.+.|+-
T Consensus 185 ~p~~~~r~~il~~~~~~~~--~~~----~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 185 APDVKGREQILRIHARGKP--LAE----DVDLALLAKRTPGFV 221 (254)
T ss_dssp SCCHHHHHHHHHHHHTTSC--BCT----TCCHHHHHHTCTTCC
T ss_pred CcCHHHHHHHHHHHHcCCC--CCc----ccCHHHHHHHcCCCC
Confidence 8888888888877654321 010 112445777777764
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.26 E-value=1.4e-05 Score=72.32 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
..++++|++|+|||++|+.+.+. ........+.+++........ . ....+...++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~-------------------~----~~~~l~~~~~ 576 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS-------------------T----SGGQLTEKVR 576 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC-------------------C----C---CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc-------------------c----ccchhhHHHH
Confidence 36999999999999999999883 322223345666543211000 0 0001111222
Q ss_pred HHhCCceEEEEEeCCCC--chhHHHHHHhccCC-----------CCCcEEEEEeCchh-------------hhhhhccCC
Q 039728 89 GHLKDKNYMVVFDDVWK--IDFWGDVEHALLDN-----------KKCGRIIVTTRHMN-------------VAKACKSSS 142 (263)
Q Consensus 89 ~~l~~~~~LlvlD~~~~--~~~~~~l~~~l~~~-----------~~~~~iliTsR~~~-------------~~~~~~~~~ 142 (263)
. ...-+|+||+++. ....+.+...+... ..++.+|.||.... ..+......
T Consensus 577 ~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl 653 (758)
T 3pxi_A 577 R---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI 653 (758)
T ss_dssp H---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS
T ss_pred h---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhC
Confidence 1 2334899999983 33444444444321 23457888887311 111111111
Q ss_pred CccceeccCCCccchHHHHHHHh
Q 039728 143 PVHIHELETLPPNEAWKLFCRKA 165 (263)
Q Consensus 143 ~~~~~~l~~ls~~e~~~ll~~~~ 165 (263)
...+.+.+++.++..+++...+
T Consensus 654 -~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 654 -DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp -SEEEECC--CHHHHHHHHHHHH
T ss_pred -CeEEecCCCCHHHHHHHHHHHH
Confidence 1578899999998888887665
No 67
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.25 E-value=1.6e-05 Score=62.70 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=67.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHHHH
Q 039728 11 VAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGH 90 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (263)
++|+|++|+|||||++.++.. ... ..++++.....+.. .......+...+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~~----------------------~~~~~~~i~~vf~~a 99 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNMY----------------------VGESERAVRQVFQRA 99 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSST----------------------THHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhhh----------------------hhHHHHHHHHHHHHH
Confidence 899999999999999999873 221 23444433221100 000000111111111
Q ss_pred hCCceEEEEEeCCCCc-------------hhHHHHHHhccCC--CCCcEEEEEeCchhhhhhhccC--CCccceeccCCC
Q 039728 91 LKDKNYMVVFDDVWKI-------------DFWGDVEHALLDN--KKCGRIIVTTRHMNVAKACKSS--SPVHIHELETLP 153 (263)
Q Consensus 91 l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~~~~--~~~~~~~l~~ls 153 (263)
....+.++++|+++.. ....++...+... ....-++.+|.........-.. .-...+.++..+
T Consensus 100 ~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~ 179 (274)
T 2x8a_A 100 KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179 (274)
T ss_dssp HHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCC
T ss_pred HhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcC
Confidence 1245789999999742 1123333333322 2233344555554433221110 112567888888
Q ss_pred ccchHHHHHHHhc
Q 039728 154 PNEAWKLFCRKAS 166 (263)
Q Consensus 154 ~~e~~~ll~~~~~ 166 (263)
.++-.++|+....
T Consensus 180 ~~~r~~il~~~~~ 192 (274)
T 2x8a_A 180 PADRLAILKTITK 192 (274)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 8899999987764
No 68
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.23 E-value=4.8e-06 Score=71.08 Aligned_cols=175 Identities=10% Similarity=0.041 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRG 89 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (263)
-++|+|++|+|||+||+.++.. .. ...++++...... . ... .....+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~--------------~--------~~g----~~~~~v~~ 114 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE--------------M--------FVG----VGAARVRD 114 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS--------------S--------CTT----HHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH--------------h--------hhh----hHHHHHHH
Confidence 3899999999999999999883 22 1233444332110 0 000 01111222
Q ss_pred HhC----CceEEEEEeCCCCc----------------hhHHHHHHhccCCC--CCcEEEEEeCchhhhhh-hccC-CCcc
Q 039728 90 HLK----DKNYMVVFDDVWKI----------------DFWGDVEHALLDNK--KCGRIIVTTRHMNVAKA-CKSS-SPVH 145 (263)
Q Consensus 90 ~l~----~~~~LlvlD~~~~~----------------~~~~~l~~~l~~~~--~~~~iliTsR~~~~~~~-~~~~-~~~~ 145 (263)
.+. ..+.++++|+++.. ..+.++...+.... ....++.+|........ .... .-..
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr 194 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDR 194 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCC
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccce
Confidence 221 24579999999621 11234444443222 23344445555443221 1100 0114
Q ss_pred ceeccCCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh-hHHHHHHHH-----hccC--CCCHHHHHHHH
Q 039728 146 IHELETLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP-LAIVAVGGL-----LSTK--NRVVSEWKKLF 217 (263)
Q Consensus 146 ~~~l~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~~~~~-----l~~~--~~~~~~~~~~~ 217 (263)
.+.++..+.++-.++++.+..... ... ......++..+.|+. .-|..+... .+.. .-+.+....++
T Consensus 195 ~i~i~~Pd~~~R~~IL~~~~~~~~--l~~----dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 195 QIAIDAPDVKGREQILRIHARGKP--LAE----DVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 268 (499)
T ss_dssp EEECCCCCHHHHHHHHHHTTSSSC--CCC----SSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHhcCC--CCh----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 678888888888888877654321 111 112456778888876 333333221 1111 22446666666
Q ss_pred HHhc
Q 039728 218 DRLG 221 (263)
Q Consensus 218 ~~~~ 221 (263)
++..
T Consensus 269 ~~v~ 272 (499)
T 2dhr_A 269 DRVM 272 (499)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6553
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.22 E-value=3.7e-06 Score=66.60 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=74.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHHHH
Q 039728 11 VAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGH 90 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (263)
++|+|++|+|||||++.++.. .. ...+.++... +.... ...........++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~~----------~~~~~------------~~~~~~~i~~~~~~~ 128 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSD----------FVEMF------------VGVGAARVRDLFETA 128 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHHH----------HHHST------------TTHHHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH--cC---CCEEEecHHH----------HHHHH------------hhHHHHHHHHHHHHH
Confidence 899999999999999999983 32 1233333210 00000 000011111222222
Q ss_pred hCCceEEEEEeCCCCc----------------hhHHHHHHhccCCCC--CcEEEEEeCchhhhh-hhccC-CCccceecc
Q 039728 91 LKDKNYMVVFDDVWKI----------------DFWGDVEHALLDNKK--CGRIIVTTRHMNVAK-ACKSS-SPVHIHELE 150 (263)
Q Consensus 91 l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~~~~~--~~~iliTsR~~~~~~-~~~~~-~~~~~~~l~ 150 (263)
....+.++++|+++.. ..+.++...+..... ...++.++....... ..... .-...+.++
T Consensus 129 ~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~ 208 (278)
T 1iy2_A 129 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208 (278)
T ss_dssp HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECC
T ss_pred HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeC
Confidence 2345689999998521 112233333332222 223344555443322 11110 111467888
Q ss_pred CCCccchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 039728 151 TLPPNEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLP 193 (263)
Q Consensus 151 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 193 (263)
..+.++-.+++........ ... +.....++..+.|+.
T Consensus 209 ~p~~~~r~~il~~~~~~~~--~~~----~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 209 APDVKGREQILRIHARGKP--LAE----DVDLALLAKRTPGFV 245 (278)
T ss_dssp CCCHHHHHHHHHHHHTTSC--BCT----TCCHHHHHHTCTTCC
T ss_pred CcCHHHHHHHHHHHHccCC--CCc----ccCHHHHHHHcCCCC
Confidence 8888888888887764321 010 112445777777765
No 70
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.20 E-value=3.1e-05 Score=62.10 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
...|+|+|++|+|||++|+.+.+. ....-...+.+++...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~--~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHAC--SARSDRPLVTLNCAAL 64 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHH--SSCSSSCCCEEECSSC
T ss_pred CCcEEEECCCCchHHHHHHHHHHh--CcccCCCeEEEeCCCC
Confidence 456889999999999999999873 2222122345666543
No 71
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.20 E-value=1.9e-06 Score=61.16 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..|.|+|++|+|||++|+.+.+.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45889999999999999999883
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.20 E-value=2.1e-05 Score=66.75 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=59.3
Q ss_pred EEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEe----------C----chhhhhhhccCCCccceeccCCCccchHH
Q 039728 96 YMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTT----------R----HMNVAKACKSSSPVHIHELETLPPNEAWK 159 (263)
Q Consensus 96 ~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTs----------R----~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ 159 (263)
-++++|+++. .+..+.+...+...+.. .+|+.| . ......... ++...+.+.+++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~--sR~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLL--DRVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHH--TTEEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHH--hhcceeeCCCCCHHHHHH
Confidence 4899999984 45667777776665555 344343 2 111112222 223568999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHHhc-CCChhHHHHHHH
Q 039728 160 LFCRKASGPSSGGCCPSELKELSQDILGKC-EGLPLAIVAVGG 201 (263)
Q Consensus 160 ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Pl~l~~~~~ 201 (263)
++..++.... ....++.+..+++.+ +|.|.....+..
T Consensus 374 iL~~~~~~~~-----~~~~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 374 IIKIRAQTEG-----INISEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp HHHHHHHHHT-----CCBCHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred HHHHHHHHhC-----CCCCHHHHHHHHHHccCCCHHHHHHHHH
Confidence 9987753210 111245667788887 788775544433
No 73
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.19 E-value=2e-06 Score=63.52 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+.++|+|++|+|||++|+.+++.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567799999999999999999873
No 74
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.18 E-value=5.9e-06 Score=71.63 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|++|+||||||+.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 75
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.17 E-value=1.1e-05 Score=61.20 Aligned_cols=43 Identities=23% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKN 53 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (263)
....++.|.|++|+|||||+.+++. ..-..++|++.....+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~ 60 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPE 60 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHH
Confidence 4567899999999999999999986 122357788876644443
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.17 E-value=4e-06 Score=76.69 Aligned_cols=135 Identities=12% Similarity=0.053 Sum_probs=65.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccc---ccC--CceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGL---KTH--FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEME 82 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 82 (263)
.+.++|+|++|+|||++|+.++....- ... -..++++++....... ...+ ....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~--------------------~~~g-~~~~ 249 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA--------------------KYRG-EFEE 249 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------------------------CHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC--------------------ccch-HHHH
Confidence 345789999999999999999873211 111 1123344432211000 0000 1112
Q ss_pred HHHHHHHHh-C-CceEEEEEeCCCCch----------hHHHHHHhccCCCCCcEEEEEeCchhhhh---hhccCCCccce
Q 039728 83 LITTLRGHL-K-DKNYMVVFDDVWKID----------FWGDVEHALLDNKKCGRIIVTTRHMNVAK---ACKSSSPVHIH 147 (263)
Q Consensus 83 ~~~~~~~~l-~-~~~~LlvlD~~~~~~----------~~~~l~~~l~~~~~~~~iliTsR~~~~~~---~~~~~~~~~~~ 147 (263)
.+..+...+ . +++.+|++|+++... ..+.+...+.. ....+|.+|....... ......+...+
T Consensus 250 ~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i 327 (854)
T 1qvr_A 250 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPV 327 (854)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCE
T ss_pred HHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceE
Confidence 222222222 2 367899999998432 11223222222 2344665555443211 11122234568
Q ss_pred eccCCCccchHHHHHHHh
Q 039728 148 ELETLPPNEAWKLFCRKA 165 (263)
Q Consensus 148 ~l~~ls~~e~~~ll~~~~ 165 (263)
.+++.+.++..++++...
T Consensus 328 ~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 328 YVDEPTVEETISILRGLK 345 (854)
T ss_dssp EECCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHhhh
Confidence 999999999999997543
No 77
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.15 E-value=4.3e-06 Score=65.69 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
...++|+|++|+|||++|+.+.+. ....-...+.+++...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~--~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT--STTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh--cCccCCCeEEEecCCC
Confidence 356889999999999999999883 2222122445665543
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.07 E-value=1.5e-06 Score=78.04 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=67.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
..+-++++||+|+|||.+|++++.. ... -|+.+.. . + +.... .+.+...+...
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e--~~~-----~f~~v~~----~----~----l~s~~--------vGese~~vr~l 562 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIKG----P----E----LLTMW--------FGESEANVREI 562 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHT--TTC-----EEEECCH----H----H----HHTTT--------CSSCHHHHHHH
T ss_pred CCceEEEecCCCCCchHHHHHHHHH--hCC-----ceEEecc----c----h----hhccc--------cchHHHHHHHH
Confidence 3456889999999999999999983 221 2333321 1 1 11111 11122233333
Q ss_pred HHHHhCCceEEEEEeCCCCc----------------hhHHHHHHhccCCCC--CcEEEEEeCchhhh-hhh-ccCCCccc
Q 039728 87 LRGHLKDKNYMVVFDDVWKI----------------DFWGDVEHALLDNKK--CGRIIVTTRHMNVA-KAC-KSSSPVHI 146 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~----------------~~~~~l~~~l~~~~~--~~~iliTsR~~~~~-~~~-~~~~~~~~ 146 (263)
+...-...+++|+||++|.. ....+++..+..... +.-||-||...... ... ....=.+.
T Consensus 563 F~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~ 642 (806)
T 3cf2_A 563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 642 (806)
T ss_dssp HHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCE
T ss_pred HHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEE
Confidence 43333567899999999831 124455555543332 22233344333221 111 10001156
Q ss_pred eeccCCCccchHHHHHHHhcCC
Q 039728 147 HELETLPPNEAWKLFCRKASGP 168 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~~ 168 (263)
+.++.-+.++-.++|+.++.+.
T Consensus 643 i~v~lPd~~~R~~il~~~l~~~ 664 (806)
T 3cf2_A 643 IYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp EEC-----CHHHHTTTTTSSCC
T ss_pred EEECCcCHHHHHHHHHHHhcCC
Confidence 7787777788788887766443
No 79
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.05 E-value=7.7e-06 Score=60.60 Aligned_cols=123 Identities=21% Similarity=0.124 Sum_probs=65.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC---CCHHHHHHHHHHHHh-hccCCCCcccc-----ccc
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE---YNKNELLRTVIKEFH-SFSGQPTPVEI-----HKM 78 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~-~~~~~~~~~~~-----~~~ 78 (263)
...|.|++..|.||||+|.....+ .....+ .+.++..... .....++..+ . +. ...+....... ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR-A~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L-~-v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR-AVGHGK-NVGVVQFIKGTWPNGERNLLEPH-G-VEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH-HHHTTC-CEEEEESSCCSSCCHHHHHHGGG-T-CEEEECCTTCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-HHHCCC-eEEEEEeeCCCCCccHHHHHHhC-C-cEEEEcccccccCCCCcHHHHH
Confidence 456677777779999999887763 222233 3555544332 2222333332 1 10 01111110000 011
Q ss_pred cHHHHHHHHHHHhCCceE-EEEEeCCC-----CchhHHHHHHhccCCCCCcEEEEEeCchhh
Q 039728 79 EEMELITTLRGHLKDKNY-MVVFDDVW-----KIDFWGDVEHALLDNKKCGRIIVTTRHMNV 134 (263)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~-LlvlD~~~-----~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 134 (263)
.........++.+.+.++ |+|||++- ..-..+++...+...+....+|+|+|....
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 122344455555555444 99999983 223445666777777778899999999643
No 80
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.04 E-value=7.5e-05 Score=54.86 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=39.6
Q ss_pred hCCceEEEEEeCCC-----CchhHHHHHHhccCCCCCcEEEEEeC---chhhhhhhccCCCccceeccCCCccchHHHHH
Q 039728 91 LKDKNYMVVFDDVW-----KIDFWGDVEHALLDNKKCGRIIVTTR---HMNVAKACKSSSPVHIHELETLPPNEAWKLFC 162 (263)
Q Consensus 91 l~~~~~LlvlD~~~-----~~~~~~~l~~~l~~~~~~~~iliTsR---~~~~~~~~~~~~~~~~~~l~~ls~~e~~~ll~ 162 (263)
+..++-++|||++. +....+.+...+.. .+..+|+++. +...............+++...+.++..+-+.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 55667799999954 22233444444443 3444666663 44444444444334678887777666655443
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.00 E-value=8.9e-05 Score=67.87 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
...++|+|++|+|||++|+.+.+. ....-...+.+++..
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTE 626 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechh
Confidence 358999999999999999999873 322222344555544
No 82
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.96 E-value=2.5e-06 Score=68.54 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-cCCceeEEEEe
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLK-THFSSRAWVTV 46 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~-~~~~~~~~~~~ 46 (263)
.+.+.|+|++|+|||+||..+++. .. .....++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 578899999999999999999884 33 22223555554
No 83
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.96 E-value=4.3e-06 Score=66.81 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=44.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEe--CCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTV--GKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
..+++.|+|++|+|||+||.+++.. ... .++|++. ....+. .. .+.+..+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~----~G~-~VlyIs~~~eE~v~~----------------------~~-~~le~~l 173 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA----LGG-KDKYATVRFGEPLSG----------------------YN-TDFNVFV 173 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH----HHT-TSCCEEEEBSCSSTT----------------------CB-CCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh----CCC-CEEEEEecchhhhhh----------------------hh-cCHHHHH
Confidence 4467899999999999999999873 111 3567776 222100 00 2234445
Q ss_pred HHHHHHhCCceEEEEEeCCCC
Q 039728 85 TTLRGHLKDKNYMVVFDDVWK 105 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~ 105 (263)
..+.+.+...+ ++|+|++..
T Consensus 174 ~~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 174 DDIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHHHHHCS-EEEEECCTT
T ss_pred HHHHHHHhhCC-EEEEecccc
Confidence 55555554445 999999973
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.92 E-value=0.0003 Score=57.32 Aligned_cols=159 Identities=10% Similarity=-0.069 Sum_probs=97.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
.-.++.+++|+.|.||++.+..+..... ...+.....+......+...+ ..
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l----~~------------------------ 66 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI----FS------------------------ 66 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH----HH------------------------
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH----HH------------------------
Confidence 3467889999999999999998877321 122321111122222222222 11
Q ss_pred HHHH-HhCCceEEEEEeCCCC---chhHHHHHHhccCCCCCcEEEEEeCc-------hhhhhhhccCCCccceeccCCCc
Q 039728 86 TLRG-HLKDKNYMVVFDDVWK---IDFWGDVEHALLDNKKCGRIIVTTRH-------MNVAKACKSSSPVHIHELETLPP 154 (263)
Q Consensus 86 ~~~~-~l~~~~~LlvlD~~~~---~~~~~~l~~~l~~~~~~~~iliTsR~-------~~~~~~~~~~~~~~~~~l~~ls~ 154 (263)
.... -+-+++-++|+|+++. ....+.+...+...++++.+|+++.. ..+...... ....++..+++.
T Consensus 67 ~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~~~~l~~ 144 (343)
T 1jr3_D 67 LCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVTCQTPEQ 144 (343)
T ss_dssp HHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEEECCCCT
T ss_pred HhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEEeeCCCH
Confidence 1111 1224556788899875 34567788777776667777766643 233333333 236899999999
Q ss_pred cchHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 039728 155 NEAWKLFCRKASGPSSGGCCPSELKELSQDILGKCEGLPLAIVAVG 200 (263)
Q Consensus 155 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 200 (263)
++....+.+.+.... ....++.+..+++.++|....+....
T Consensus 145 ~~l~~~l~~~~~~~g-----~~i~~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 145 AQLPRWVAARAKQLN-----LELDDAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp THHHHHHHHHHHHTT-----CEECHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhchHHHHHHHHH
Confidence 999988888764321 22235778889999999888766543
No 85
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.89 E-value=7.4e-06 Score=62.36 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=59.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
....+++++|++|+||||++..++.+ ...+-..++++....... ....++..+ +...+ ........++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srl----G~~~~-~~~~~~~~~i~~ 79 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRT----GTSLP-SVEVESAPEILN 79 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCC----CCSSC-CEEESSTHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhc----CCCcc-ccccCCHHHHHH
Confidence 34578999999999999999998884 333333344444332211 111222222 11111 111122344555
Q ss_pred HHHHHhCCc-eEEEEEeCCCC--chhHHHHHHhccCCCCCcEEEEEeCc
Q 039728 86 TLRGHLKDK-NYMVVFDDVWK--IDFWGDVEHALLDNKKCGRIIVTTRH 131 (263)
Q Consensus 86 ~~~~~l~~~-~~LlvlD~~~~--~~~~~~l~~~l~~~~~~~~iliTsR~ 131 (263)
.+.+.+.+. .-++|+|++.. .+.++.+ ..+.+. +..+|+|.+.
T Consensus 80 ~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 80 YIMSNSFNDETKVIGIDEVQFFDDRICEVA-NILAEN--GFVVIISGLD 125 (223)
T ss_dssp HHHSTTSCTTCCEEEECSGGGSCTHHHHHH-HHHHHT--TCEEEEECCS
T ss_pred HHHHHhhCCCCCEEEEecCccCcHHHHHHH-HHHHhC--CCeEEEEecc
Confidence 555544433 45999999873 2333333 333332 6789999883
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.89 E-value=1.7e-05 Score=71.94 Aligned_cols=134 Identities=12% Similarity=0.079 Sum_probs=68.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
....|+|+|++|+||||||+.++.. .... .+.++... +... ............
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~--l~~~---~i~v~~~~--------------l~~~--------~~g~~~~~l~~v 289 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE--------------IMSK--------LAGESESNLRKA 289 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT--TTCE---EEEEEHHH--------------HSSS--------STTHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH--cCCc---EEEEEchH--------------hhhh--------hhhhHHHHHHHH
Confidence 4457899999999999999999883 3222 23343211 1000 000011122222
Q ss_pred HHHHhCCceEEEEEeCCCCc-------------hhHHHHHHhccCC--CCCcEEEEEeCchhhhh-hhccCCCc-cceec
Q 039728 87 LRGHLKDKNYMVVFDDVWKI-------------DFWGDVEHALLDN--KKCGRIIVTTRHMNVAK-ACKSSSPV-HIHEL 149 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~-------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~-~~~~~~~~-~~~~l 149 (263)
+.......+.++++|+++.. .....+...+... ..+..+|.+|....... ........ ..+.+
T Consensus 290 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i 369 (806)
T 1ypw_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (806)
T ss_dssp HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECC
T ss_pred HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccccccccc
Confidence 33333346789999999621 1123333333322 22345555555532221 11110011 35677
Q ss_pred cCCCccchHHHHHHHhcC
Q 039728 150 ETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 150 ~~ls~~e~~~ll~~~~~~ 167 (263)
...+.++-.+++......
T Consensus 370 ~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 370 GIPDATGRLEILQIHTKN 387 (806)
T ss_dssp CCCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 778888888888876543
No 87
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.88 E-value=0.0002 Score=64.68 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...++++|++|+|||++|+.+.+.
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999999883
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=3.6e-05 Score=58.87 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
...+++|.|++|+|||||+..++.. ....-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc
Confidence 4568999999999999999999863 222222456666543
No 89
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.86 E-value=0.00018 Score=65.03 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=68.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccc---ccC-CceeEE-EEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGL---KTH-FSSRAW-VTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEM 81 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 81 (263)
....++|+|++|+|||++|+.++..... ... ....+| ++..... .. . ... ....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~--------------~~--~----~~~-g~~e 264 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL--------------AG--T----KYR-GDFE 264 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------------CC--C----CCS-SCHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh--------------cc--c----ccc-chHH
Confidence 3456789999999999999999873211 100 111122 1111100 00 0 001 1122
Q ss_pred HHHHHHHHHh-CCceEEEEEeCCCCc--------hhH--HHHHHhccCCCCCcEEEEEeCchhhhhhhc----cCCCccc
Q 039728 82 ELITTLRGHL-KDKNYMVVFDDVWKI--------DFW--GDVEHALLDNKKCGRIIVTTRHMNVAKACK----SSSPVHI 146 (263)
Q Consensus 82 ~~~~~~~~~l-~~~~~LlvlD~~~~~--------~~~--~~l~~~l~~~~~~~~iliTsR~~~~~~~~~----~~~~~~~ 146 (263)
...+.+...+ ..++.+|++|+++.. ... ..+...+.. .....+|.+|.......... ...+...
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~ 343 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQK 343 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCceE
Confidence 2333333333 345789999999854 111 122222222 23445666666543221111 1112246
Q ss_pred eeccCCCccchHHHHHHHh
Q 039728 147 HELETLPPNEAWKLFCRKA 165 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~ 165 (263)
+.++..+.++..+++....
T Consensus 344 i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 344 IDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 8899999999988887654
No 90
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.84 E-value=9.7e-05 Score=60.60 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+++.|+|++|+|||+|+.+++... ...-..++|++........ .+..+....... ......+.++...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l--~i~~~~~~e~~l~ 142 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDEL--LVSQPDNGEQALE 142 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGC--EEECCSSHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHc--eeecCCcHHHHHH
Confidence 456789999999999999999988742 2222357899887655533 123332111100 0011123455555
Q ss_pred HHHHHhCC-ceEEEEEeCCC
Q 039728 86 TLRGHLKD-KNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~~-~~~LlvlD~~~ 104 (263)
.+....+. ..-++|+|.+.
T Consensus 143 ~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 143 IMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHHHTTTCCSEEEEECTT
T ss_pred HHHHHHhcCCCCEEEEeChH
Confidence 55544443 44589999876
No 91
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.83 E-value=4.4e-05 Score=62.25 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=53.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+++.|+|++|+|||||+.+++.. ....-..++|++........ .+..+....... ......+.++.+.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l--~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSL--LISQPDHGEQALE 129 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGC--EEECCSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhh--hhhhccCHHHHHH
Confidence 45679999999999999999999873 22222346788876655543 334443221110 0112223445555
Q ss_pred HHHHHhC-CceEEEEEeCCC
Q 039728 86 TLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~-~~~~LlvlD~~~ 104 (263)
.+..... .+.-++|+|.+.
T Consensus 130 ~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 130 IVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHHHTSCCSEEEEECTT
T ss_pred HHHHHhhhcCCCeEEehHhh
Confidence 5544443 345688999875
No 92
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.80 E-value=2.9e-05 Score=66.10 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc---cccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDG---LKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
..-++|+|++|+|||++|+.++.... +.......-++.+... .... ..........+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----------~~~~---------g~~e~~~~~~~ 260 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----------TKYR---------GEFEDRLKKVM 260 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------------------CTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----------cccc---------chHHHHHHHHH
Confidence 34568999999999999999987321 1111111122222111 0000 00000111222
Q ss_pred HHHHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhh------hhhhccCCCccceeccCCCccchH
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNV------AKACKSSSPVHIHELETLPPNEAW 158 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~------~~~~~~~~~~~~~~l~~ls~~e~~ 158 (263)
..+ -..++.+|++|. ..+..+.+...+. ....++|.+|..... ..... .++..+.++..+.++..
T Consensus 261 ~~~---~~~~~~iLfiD~--~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~--~Rf~~i~v~~p~~e~~~ 331 (468)
T 3pxg_A 261 DEI---RQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE--RRFQPIQVDQPSVDESI 331 (468)
T ss_dssp HHH---HTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH--HSEEEEECCCCCHHHHH
T ss_pred HHH---HhcCCeEEEEeC--chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH--HhCccceeCCCCHHHHH
Confidence 222 234678899992 2222222222221 223456655554431 11111 12357999999999999
Q ss_pred HHHHHHhcC
Q 039728 159 KLFCRKASG 167 (263)
Q Consensus 159 ~ll~~~~~~ 167 (263)
+++......
T Consensus 332 ~iL~~~~~~ 340 (468)
T 3pxg_A 332 QILQGLRDR 340 (468)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHHH
Confidence 999876543
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.77 E-value=3.7e-05 Score=62.33 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLR 88 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (263)
.-++|+|++|+|||++|+.+.+ ..... ...+.+.......+... ........ . ..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l~g----~~~~~~~~-~--~~------------- 101 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDLIG----TMIYNQHK-G--NF------------- 101 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHHHE----EEEEETTT-T--EE-------------
T ss_pred CeEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhcCC----ceeecCCC-C--ce-------------
Confidence 3588999999999999999988 33222 22344443333322111 00000000 0 00
Q ss_pred HHhCC---ceEEEEEeCCCCc--hhHHHHHHhccC-----------CCCCcEEEEEeCchh------hhhhhccCCCccc
Q 039728 89 GHLKD---KNYMVVFDDVWKI--DFWGDVEHALLD-----------NKKCGRIIVTTRHMN------VAKACKSSSPVHI 146 (263)
Q Consensus 89 ~~l~~---~~~LlvlD~~~~~--~~~~~l~~~l~~-----------~~~~~~iliTsR~~~------~~~~~~~~~~~~~ 146 (263)
.+.. ...++++|+++.. .....+...+.. .+....++.|+.... ......... ...
T Consensus 102 -~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf-~~~ 179 (331)
T 2r44_A 102 -EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF-MMK 179 (331)
T ss_dssp -EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS-SEE
T ss_pred -EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe-eEE
Confidence 0000 1258999999842 233333332221 123445555655322 111221211 124
Q ss_pred eeccCCCccchHHHHHHHhcC
Q 039728 147 HELETLPPNEAWKLFCRKASG 167 (263)
Q Consensus 147 ~~l~~ls~~e~~~ll~~~~~~ 167 (263)
+.++..+.++-.+++......
T Consensus 180 i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 180 IHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EECCCCCHHHHHHHHHHHHCT
T ss_pred EEcCCCCHHHHHHHHHhcccc
Confidence 888999999999999888754
No 94
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.71 E-value=8.5e-05 Score=60.65 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=52.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+++.|+|++|+|||||+.+++.. ....-..++|++........ .+..+....... ......+.++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l--~i~~~~~~e~~l~ 129 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSL--LVSQPDTGEQALE 129 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGC--EEECCSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHe--EEecCCCHHHHHH
Confidence 45678999999999999999999863 22223357788877655432 133332111100 0011123445555
Q ss_pred HHHHHhC-CceEEEEEeCCC
Q 039728 86 TLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~-~~~~LlvlD~~~ 104 (263)
.+..... .++-++|+|.+.
T Consensus 130 ~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 130 IADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHHHTTTCCSEEEEECGG
T ss_pred HHHHHHhcCCCCEEEEcChH
Confidence 4444443 346699999875
No 95
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.69 E-value=8.6e-05 Score=60.71 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=61.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
..+++|.|+.|+||||+++.++. .........++ ...++.... .......................+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~~----------~~~~~~~v~q~~~~~~~~~~~~~L 189 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEFV----------HESKKCLVNQREVHRDTLGFSEAL 189 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCSC----------CCCSSSEEEEEEBTTTBSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHhh----------hhccccceeeeeeccccCCHHHHH
Confidence 45899999999999999999877 33322122221 222211100 000000000000001111234467
Q ss_pred HHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhhh
Q 039728 88 RGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAK 136 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 136 (263)
...+...|=+|++|+..+.+.+..+.... ..|..+++|+.......
T Consensus 190 a~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 190 RSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 78888889899999998766555444332 23556888888765543
No 96
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.68 E-value=7.7e-05 Score=57.46 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNK 52 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 52 (263)
....++.|.|++|+|||||+..++....... .-..++|++.......
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~ 72 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP 72 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCH
Confidence 4557899999999999999999886311211 1346778887664343
No 97
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.65 E-value=0.00017 Score=57.48 Aligned_cols=88 Identities=7% Similarity=0.005 Sum_probs=51.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHH-HHHHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMEL-ITTLR 88 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (263)
++.|+|++|+|||||+.+++........-..++|++........ .++++.....+.. .....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~ll--v~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVI--HTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEE--EEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeE--EEcCCCHHHHHHHHHH
Confidence 78999999999999999988742211112357799887766643 2444433211110 1122234444 33332
Q ss_pred HH--h-CCceEEEEEeCCC
Q 039728 89 GH--L-KDKNYMVVFDDVW 104 (263)
Q Consensus 89 ~~--l-~~~~~LlvlD~~~ 104 (263)
.. + ..++-++|+|.+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 3 3467899999886
No 98
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.63 E-value=7.3e-05 Score=67.57 Aligned_cols=130 Identities=13% Similarity=0.098 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc---ccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNND---GLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
..-++|+|++|+|||++|+.++... .+.......-++.+.. ..... ..........
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g~~~~-----G~~e~~l~~~- 259 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------GTKYR-----GEFEDRLKKV- 259 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------------------CTTHHHH-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------ccccc-----chHHHHHHHH-
Confidence 3457899999999999999998732 1111111111222211 00000 0000111122
Q ss_pred HHHHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhh------hhhhccCCCccceeccCCCccchH
Q 039728 85 TTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNV------AKACKSSSPVHIHELETLPPNEAW 158 (263)
Q Consensus 85 ~~~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~------~~~~~~~~~~~~~~l~~ls~~e~~ 158 (263)
+......++.+|++|. ..+..+.+...+. .....+|.+|..... ...... +...+.++..+.++..
T Consensus 260 --~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~~i~v~~p~~~~~~ 331 (758)
T 3pxi_A 260 --MDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER--RFQPIQVDQPSVDESI 331 (758)
T ss_dssp --HHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEEEECCCCCHHHHH
T ss_pred --HHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh--hCcEEEeCCCCHHHHH
Confidence 2222235678999992 2222222222221 223456666655442 111111 2357899999999999
Q ss_pred HHHHHHhc
Q 039728 159 KLFCRKAS 166 (263)
Q Consensus 159 ~ll~~~~~ 166 (263)
+++.....
T Consensus 332 ~il~~~~~ 339 (758)
T 3pxi_A 332 QILQGLRD 339 (758)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 99986654
No 99
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.62 E-value=0.00087 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346889999999999999999876
No 100
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.58 E-value=0.00011 Score=60.17 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+++.|+|++|+||||||.+++... ...-..++|++.....+... +..+....... ......+..+...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l--~i~~~~~~e~~~~ 131 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNL--LCSQPDTGEQALE 131 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGC--EEECCSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhhe--eeeCCCCHHHHHH
Confidence 456789999999999999999988742 22223578888876555331 23332111000 0011112334444
Q ss_pred HHHHHh-CCceEEEEEeCCC
Q 039728 86 TLRGHL-KDKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l-~~~~~LlvlD~~~ 104 (263)
.+.... ..+.-++|+|.+.
T Consensus 132 ~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 132 ICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHHHTCCSEEEEECGG
T ss_pred HHHHHHhccCCCEEEEcCHH
Confidence 443332 2345589999875
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.58 E-value=3.8e-05 Score=60.06 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITT 86 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (263)
...+++|.|+.|+||||+++.+.. .....+.+.+++.-..... +.............+.+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~-----------~~~~~~~~v~q~~~gl~~~~l~~~ 90 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEY-----------VFKHKKSIVNQREVGEDTKSFADA 90 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCS-----------CCCCSSSEEEEEEBTTTBSCHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCccee-----------ecCCcceeeeHHHhCCCHHHHHHH
Confidence 456899999999999999999887 3332223344333221100 000000000000000000122344
Q ss_pred HHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhhh
Q 039728 87 LRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVA 135 (263)
Q Consensus 87 ~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 135 (263)
+...+...+=++++|+..+.+....+.... ..|..+++|+......
T Consensus 91 la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 555555567788999997555444433332 2355678888765543
No 102
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.52 E-value=0.00025 Score=57.36 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccC----CceeEEEEeCCCCCHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTH----FSSRAWVTVGKEYNKNEL 55 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 55 (263)
....++.|+|++|+|||+|+.+++........ -..++|++.....+...+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l 158 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI 158 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 45678999999999999999998863222110 235779888776554443
No 103
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.51 E-value=0.00044 Score=52.26 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999876
No 104
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.00033 Score=57.07 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNKNE 54 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 54 (263)
....++.|+|++|+|||+|+.+++....... .-..++|++.....+...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~ 172 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR 172 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHH
Confidence 4567999999999999999999887422211 223577988877555443
No 105
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.49 E-value=8.5e-06 Score=73.88 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+.++|+|++|+|||+||+.++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999983
No 106
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.48 E-value=3.6e-05 Score=56.86 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
|.|+|.||+|+|||||+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999987
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.47 E-value=2.2e-05 Score=58.08 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++++|+.|+||||++.+.+.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999777763
No 108
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.44 E-value=0.0015 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998763
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.44 E-value=6.3e-05 Score=55.08 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|+|++|+||||+++.+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 110
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.40 E-value=0.0007 Score=54.43 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=35.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVI 60 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 60 (263)
....+++|.|++|+||||++.+++.+...+ -..++|++... +...+...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE~--s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESSS--CHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECCC--CHHHHHHHHH
Confidence 456789999999999999999988642222 24677888663 3444444443
No 111
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.40 E-value=0.00037 Score=56.26 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=35.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc---------CC-----ceeEEEEeCCCCCHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT---------HF-----SSRAWVTVGKEYNKNELL 56 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~ 56 (263)
....++.|+|++|+|||+++.+++....... .. ..++|++.....+...+.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~ 160 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 160 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH
Confidence 4567999999999999999999886321111 11 457788887765554433
No 112
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.39 E-value=0.0012 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++|++.|++|+||||++..++.
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHH
Confidence 3578999999999999999988876
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=0.0001 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|.|++|+|||||++.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999987
No 114
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.37 E-value=0.0007 Score=50.86 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=56.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHH----------HHHHhhccCCCCcccccccc
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTV----------IKEFHSFSGQPTPVEIHKME 79 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~l~~~~~~~~~~~~~~~~ 79 (263)
+|+|.|+||+||+|.|..+++. . +..+++.+ +++++- ++..... +.. ..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~--~-----g~~~istG------dllR~~i~~~t~lg~~~~~~~~~-G~l-------vp 60 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE--K-----GFVHISTG------DILREAVQKGTPLGKKAKEYMER-GEL-------VP 60 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--H-----CCEEEEHH------HHHHHHHHHTCHHHHHHHHHHHH-TCC-------CC
T ss_pred EEEEECCCCCCHHHHHHHHHHH--H-----CCeEEcHH------HHHHHHHHhcChhhhhHHHHHhc-CCc-------CC
Confidence 5789999999999999999982 2 23344432 222221 1112111 111 12
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCC-chhHHHHHHhccC--CCCCcEEEEEeCchhhhhhh
Q 039728 80 EMELITTLRGHLKDKNYMVVFDDVWK-IDFWGDVEHALLD--NKKCGRIIVTTRHMNVAKAC 138 (263)
Q Consensus 80 ~~~~~~~~~~~l~~~~~LlvlD~~~~-~~~~~~l~~~l~~--~~~~~~iliTsR~~~~~~~~ 138 (263)
.+.....+..++..... +|||++-. ......+...+.. ......|.+....+....+.
T Consensus 61 d~iv~~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl 121 (206)
T 3sr0_A 61 DDLIIALIEEVFPKHGN-VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERL 121 (206)
T ss_dssp HHHHHHHHHHHCCSSSC-EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCc-eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHH
Confidence 34556677777765443 68899863 2333333333221 22333455555555544443
No 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.37 E-value=0.0015 Score=54.66 Aligned_cols=26 Identities=46% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++++.|++|+||||++..++..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998863
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.37 E-value=0.00012 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|++|+||||+++.+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999988
No 117
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.36 E-value=9.3e-05 Score=53.84 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKL 28 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~ 28 (263)
.+|+|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.35 E-value=8.7e-05 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++|+|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 119
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.34 E-value=0.00017 Score=54.23 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=25.0
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 2 VNGRSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 2 ~~~~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..-....+|+|+|++|+||||+++.+..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44556678999999999999999999987
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.34 E-value=0.00011 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|.|++|+||||+++.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35799999999999999999986
No 121
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.33 E-value=0.00016 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.....+++|+|++|+||||+++.+..
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999887
No 122
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.32 E-value=0.00093 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346889999999999999998866
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.28 E-value=0.00043 Score=57.00 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeE-EEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRA-WVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+++|.|+.|+||||++..+.. .......+.+ ++.. +... .+ .......+....+.+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~--~~e~---------~~-~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIED--PIEY---------VF-KHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEES--SCCS---------CC-CCSSSEEEEEEBTTTBSCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecc--cHhh---------hh-ccCceEEEeeecCCCHHHHHH
Confidence 456899999999999999999887 3332212333 3332 1110 00 000000000000001112234
Q ss_pred HHHHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhh
Q 039728 86 TLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNV 134 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 134 (263)
.+...+...+=++++|++.+.+.+....... ..|..++.|+.....
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 5667777777899999997655444433332 235557777776543
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00018 Score=53.79 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....+++|.|++|+||||+++.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999883
No 125
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.27 E-value=0.00071 Score=56.15 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCCCCH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKEYNK 52 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 52 (263)
....++.|.|++|+|||||+.+++-...... ....++|++.......
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~ 226 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP 226 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH
Confidence 3457899999999999999997753212211 2335778887664443
No 126
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.26 E-value=0.00016 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|.||+|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999987
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.00016 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+.|+|+|++|+||||+++.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 128
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.25 E-value=0.00016 Score=59.20 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
...++|+|++|+|||||+..+.........--.++|+-++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCC
Confidence 457889999999999999988773221111113446666654
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00016 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 130
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.25 E-value=0.00014 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.|+|+|++|+||||+++.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 131
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.23 E-value=0.0026 Score=64.29 Aligned_cols=140 Identities=10% Similarity=0.076 Sum_probs=72.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
.+-+.++||+|+|||++|+.+... . ..+ ....++.....+.......+-..+........ .....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g--~~~~P--------- 1331 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKG--LTLLP--------- 1331 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTT--EEEEE---------
T ss_pred CCeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCC--ccccC---------
Confidence 357889999999999999777763 2 122 34466776666654433333322211100000 00000
Q ss_pred HHHhCCceEEEEEeCCCC--c------hhHHHHHHhccCC-----CC-------CcEEEEEeCchh------hhhhhccC
Q 039728 88 RGHLKDKNYMVVFDDVWK--I------DFWGDVEHALLDN-----KK-------CGRIIVTTRHMN------VAKACKSS 141 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~--~------~~~~~l~~~l~~~-----~~-------~~~iliTsR~~~------~~~~~~~~ 141 (263)
.-.++++++++||++- . ...+-+...+... .. +..+|.++.... +..+..
T Consensus 1332 --~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll-- 1407 (2695)
T 4akg_A 1332 --KSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT-- 1407 (2695)
T ss_dssp --BSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH--
T ss_pred --CCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh--
Confidence 0035778999999762 1 1222222222211 11 123444443321 111111
Q ss_pred CCccceeccCCCccchHHHHHHHhc
Q 039728 142 SPVHIHELETLPPNEAWKLFCRKAS 166 (263)
Q Consensus 142 ~~~~~~~l~~ls~~e~~~ll~~~~~ 166 (263)
.+...+.++..+.++-..+|...+.
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHH
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHH
Confidence 2235788999999999888877653
No 132
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.23 E-value=0.00098 Score=55.77 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+|+|+|++|+||||+++.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 133
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.23 E-value=0.00017 Score=53.37 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++++|.||+|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.23 E-value=0.00013 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 135
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.21 E-value=0.00019 Score=52.28 Aligned_cols=24 Identities=46% Similarity=0.702 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|++|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999997553
No 136
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.20 E-value=0.0002 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|++|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999886
No 137
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.20 E-value=0.0023 Score=51.15 Aligned_cols=40 Identities=35% Similarity=0.366 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVG 47 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~ 47 (263)
....+++|+|++|+||||++..++.. ....-..+.++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D 141 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD 141 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc
Confidence 45679999999999999999999873 33222234455543
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.19 E-value=0.0002 Score=53.54 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|++|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 139
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.19 E-value=0.00017 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+|+|.|++|+||||+++.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999883
No 140
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.19 E-value=0.00025 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++|+|.|+||+||+|.|..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999988
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.18 E-value=0.00027 Score=53.17 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|++|+|||||++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667999999999999999999887
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.17 E-value=0.0034 Score=49.92 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
+..+++|.|++|+||||++..++........ ..+.++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCc
Confidence 4679999999999999999998873221122 2345555433
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.17 E-value=0.00019 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|+|++|+||||+++.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 144
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.17 E-value=0.0007 Score=66.34 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+.+.|+||+|+|||+||.+++.. ....-..+.|++......... +..+....... ........++...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l--~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNL--LCSQPDTGEQALE 1495 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTC--EEECCSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhc--eeecCChHHHHHH
Confidence 45778999999999999999999873 333334577888877655444 33333211111 0111112334444
Q ss_pred HHHHHhC-CceEEEEEeCCC
Q 039728 86 TLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l~-~~~~LlvlD~~~ 104 (263)
.+....+ .++-++|+|.++
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHhcCCCCEEEEcChh
Confidence 4444432 466799999985
No 145
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.16 E-value=0.00019 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|.|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999987
No 146
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.15 E-value=0.00019 Score=53.00 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+|+|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.14 E-value=0.00025 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....|+|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 148
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.13 E-value=0.00028 Score=52.77 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+..+|+|.|++|+||||+++.+.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999987
No 149
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.12 E-value=0.00027 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00029 Score=55.92 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|++|+||||+++.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999987
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.12 E-value=0.00022 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.|+|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 152
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.11 E-value=0.00028 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|.||+|+|||||+..+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 153
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.11 E-value=0.00029 Score=52.98 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....+|+|+|++|+||||+++.+.+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 154
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.11 E-value=0.0012 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++|.|+.|+||||++....-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 46789999999999987765543
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.11 E-value=0.00027 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++++|.|++|+||||||..++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999987
No 156
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.10 E-value=0.00026 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|.|++|+||||+++.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 157
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.09 E-value=0.0003 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+++|.|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 158
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00022 Score=53.30 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++|.||+|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999999876
No 159
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.07 E-value=0.00032 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+|||||++.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999887
No 160
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.07 E-value=0.00027 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|.|++|+||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 161
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.06 E-value=0.00046 Score=50.86 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....+++|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999883
No 162
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.06 E-value=0.00034 Score=51.68 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|+|++|+||||+++.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 163
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.06 E-value=0.00033 Score=52.34 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+|+|+|++|+||||+++.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999999987
No 164
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.05 E-value=0.0033 Score=50.84 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTL 87 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
...++|.|+.|+|||||++.+.. .... ..+.+.+......... ..... ..-..+ ........+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g--~~~~-~~g~i~i~~~~e~~~~------------~~~~~-i~~~~g-gg~~~r~~l 233 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIME--FIPK-EERIISIEDTEEIVFK------------HHKNY-TQLFFG-GNITSADCL 233 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGG--GSCT-TSCEEEEESSCCCCCS------------SCSSE-EEEECB-TTBCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC--CCcC-CCcEEEECCeeccccc------------cchhE-EEEEeC-CChhHHHHH
Confidence 34789999999999999999987 3332 3455555533211100 00000 000000 011223345
Q ss_pred HHHhCCceEEEEEeCCCCchhHHHHHHhccCCCCCcEEEEEeCchhh
Q 039728 88 RGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNV 134 (263)
Q Consensus 88 ~~~l~~~~~LlvlD~~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 134 (263)
...+...+-++++|+..+.+.++.+ ..+.. . +..+|+|+.....
T Consensus 234 a~aL~~~p~ilildE~~~~e~~~~l-~~~~~-g-~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 234 KSCLRMRPDRIILGELRSSEAYDFY-NVLCS-G-HKGTLTTLHAGSS 277 (330)
T ss_dssp HHHTTSCCSEEEECCCCSTHHHHHH-HHHHT-T-CCCEEEEEECSSH
T ss_pred HHHhhhCCCEEEEcCCChHHHHHHH-HHHhc-C-CCEEEEEEcccHH
Confidence 5566778889999999875544433 33322 1 2225655554433
No 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.04 E-value=0.0002 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++|+|+|++|+||||+++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 166
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.04 E-value=0.00037 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...|+|.|++|+||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 167
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.04 E-value=0.00037 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+|+|+|++|+||||+++.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 168
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00033 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+.+..+|+|+|++|+||||+++.+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34577899999999999999999987
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.00033 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+|+|.|++|+||||+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999883
No 170
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.04 E-value=0.00026 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+.|+|.|++|+||||+++.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 171
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.03 E-value=0.0019 Score=55.44 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTV 59 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (263)
....++.|.|++|+|||+++.+++.+...+ .-..++|++... +...+...+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHH
Confidence 456789999999999999999998743222 123577887654 334444433
No 172
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.02 E-value=0.00038 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.||+|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999887
No 173
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.01 E-value=0.00088 Score=56.38 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
..++|+|++|+|||||+..+..+.... .....++..++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGer 191 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGER 191 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccC
Confidence 357899999999999999988742221 1233456666654
No 174
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.00 E-value=0.00043 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.00 E-value=0.00024 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=17.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|+|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 176
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.99 E-value=0.00041 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999876
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.99 E-value=0.00032 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|.|++|+||||+++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 178
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.99 E-value=0.00027 Score=52.66 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+.++++||+|+|||++|..+++
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999887
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.97 E-value=0.00028 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++|+|+|++|+||||+++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.97 E-value=0.0005 Score=50.31 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|+|++|+||||+++.+..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999999987
No 181
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.96 E-value=0.00038 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|+|++|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 182
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.95 E-value=0.0004 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...|+|.|++|+||||+++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999987
No 183
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.95 E-value=0.00037 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|++|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346789999999999999999886
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.95 E-value=0.00045 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|++|+||||+++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 185
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.94 E-value=0.00054 Score=51.25 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|++|+||||++..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999886
No 186
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.94 E-value=0.00061 Score=54.05 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....+|+|.|++|+|||||++.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999988773
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.94 E-value=0.00049 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|+|++|+||||+++.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 188
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.93 E-value=0.00064 Score=48.76 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+|||||++.++.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999887
No 189
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.92 E-value=0.00051 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....|+|+|++|+||||+++.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 190
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.92 E-value=0.00042 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999988
No 191
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.92 E-value=0.00044 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+|+|+|++|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 192
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.00052 Score=52.82 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....++.|.|++|+|||||+.+++.. ....-..++|++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 34568999999999999999888763 222233577877654
No 193
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.0089 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+|||||++.+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4567899999999999999999876
No 194
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.91 E-value=0.00054 Score=49.62 Aligned_cols=25 Identities=40% Similarity=0.359 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++.|.|++|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999873
No 195
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.90 E-value=0.0005 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|+|++|+||||+++.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999877
No 196
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.89 E-value=0.00064 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999876
No 197
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.88 E-value=0.0013 Score=53.25 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVI 60 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 60 (263)
....+++|.|++|+||||++.+++.+... .-..++|++... +...+...++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm--s~~ql~~Rll 94 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM--SAEQLALRAL 94 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS--CHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC--CHHHHHHHHH
Confidence 45578999999999999999999874322 233566877653 3444444443
No 198
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.88 E-value=0.00047 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.|+|+|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 199
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.88 E-value=0.00049 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.|+|+|++|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 200
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.88 E-value=0.00052 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999986
No 201
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.0012 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.|+|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 202
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.87 E-value=0.00049 Score=50.88 Aligned_cols=21 Identities=48% Similarity=0.754 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+|+|+|++|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 203
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.87 E-value=0.00053 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....|+|.|++|+||||+++.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.86 E-value=0.00056 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|++|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999983
No 205
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.85 E-value=0.0005 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|++|+||||+++.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999987
No 206
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.85 E-value=0.00047 Score=52.22 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+...|+|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999987
No 207
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.85 E-value=0.0025 Score=53.66 Aligned_cols=52 Identities=31% Similarity=0.442 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC-CHHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY-NKNELLRTVI 60 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 60 (263)
-..++|.|.+|+|||+|+.++.++. .+.+-..++|.-++... ...++..++.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~ 205 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMI 205 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhh
Confidence 3457899999999999999988732 12223456677777643 3344444443
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.84 E-value=0.00057 Score=52.77 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|++|+|||||++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4567899999999999999999884
No 209
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.84 E-value=0.00053 Score=51.80 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.|+|+|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 210
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.84 E-value=0.00062 Score=51.84 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc----CCceeEEEEeCCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKT----HFSSRAWVTVGKE 49 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~ 49 (263)
....+++|.|++|+|||||++.++....... ....++|++....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 3457899999999999999999875211110 1334677776543
No 211
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.84 E-value=0.00044 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....|+|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999987
No 212
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.84 E-value=0.0047 Score=52.30 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....+++|.|++|+|||||+.+++...... .-..++|++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM 242 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 455689999999999999999998743221 122467777654
No 213
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.83 E-value=0.00041 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh-C
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLF-N 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~-~ 30 (263)
..+++|.|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 214
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.83 E-value=0.00073 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.....+++|.|++|+|||||++.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677999999999999999999876
No 215
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.81 E-value=0.00078 Score=53.23 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+|+|+|++|+||||+++.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999874
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.80 E-value=0.00068 Score=50.33 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+|+|+|+.|+||||+++.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 217
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.80 E-value=0.00088 Score=53.82 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|++|+||||+++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999876
No 218
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.78 E-value=0.00078 Score=52.33 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|.|++|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.78 E-value=0.0055 Score=48.72 Aligned_cols=39 Identities=38% Similarity=0.343 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
..++++.|++|+||||++..++.. ....-..+.+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 678999999999999999998873 222222355555443
No 220
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.76 E-value=0.00089 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+.|+|.|++|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999884
No 221
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.76 E-value=0.0021 Score=48.73 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
+.-.|++.|.||+||||++..+..... ...+ .++++.+...
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~-~~G~-~V~v~d~D~q 45 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQL-RQGV-RVMAGVVETH 45 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHH-HTTC-CEEEEECCCT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCC-CEEEEEeCCC
Confidence 445688999999999999988887422 2233 3445555543
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.75 E-value=0.00099 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+|+|.|++|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 223
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.75 E-value=0.00042 Score=55.03 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=19.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+|+|.|++|+||||+++.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 224
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.74 E-value=0.017 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999876
No 225
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.73 E-value=0.00091 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346889999999999999999876
No 226
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.73 E-value=0.00095 Score=53.32 Aligned_cols=24 Identities=54% Similarity=0.649 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+++|.|++|+||||++..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999876
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.73 E-value=0.00095 Score=48.68 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...++++|.|++|+|||||+..+...
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHh
Confidence 35688999999999999999999873
No 228
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.72 E-value=0.001 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+|+|.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 229
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.71 E-value=0.0084 Score=50.56 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKE 62 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 62 (263)
....++.|.|++|+|||+++.+++.+.... .-..++|++... +...+...++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHH
Confidence 456789999999999999999998743221 123477877753 445555554433
No 230
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.70 E-value=0.012 Score=49.45 Aligned_cols=26 Identities=42% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+.++|++.|.+|+||||++..++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999998873
No 231
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.69 E-value=0.004 Score=53.76 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
...+++|.|++|+|||||+..++.. ....-..++|+....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~--~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEE 319 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhCCCCEEEEEEeC
Confidence 4568999999999999999999873 222212345665443
No 232
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.67 E-value=0.0012 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999887
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.67 E-value=0.0025 Score=62.64 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=54.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+++.|+|++|+|||||+.+++... ...-..++|++.....+... +..+.....+.. .....+.+++..
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~--I~~~~~~e~il~ 451 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL--CSQPDTGEQALE 451 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE--EECCSSHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeE--EeCCCCHHHHHH
Confidence 456799999999999999999998743 22333577888877665431 333332211110 112224455555
Q ss_pred HHHHHh-CCceEEEEEeCCC
Q 039728 86 TLRGHL-KDKNYMVVFDDVW 104 (263)
Q Consensus 86 ~~~~~l-~~~~~LlvlD~~~ 104 (263)
.+.... ....-++|+|.+.
T Consensus 452 ~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 452 ICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHHhcCCcEEEECCHH
Confidence 554333 2345699999876
No 234
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.046 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+|||||++.+.-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 3566899999999999999999876
No 235
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.66 E-value=0.004 Score=52.64 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCC-CHHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEY-NKNELLRTVI 60 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 60 (263)
..++|.|.+|+|||+|+.++.++. .+.+-..++|.-++... ...++..++.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~ 217 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMK 217 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhh
Confidence 456899999999999999988732 12233466777777654 3444444443
No 236
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.65 E-value=0.012 Score=51.60 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|.|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346889999999999999998876
No 237
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.65 E-value=0.001 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.++|+|.|++|+|||||+..++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 238
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.65 E-value=0.0025 Score=48.66 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|++|+||||++..+...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999884
No 239
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.65 E-value=0.0011 Score=51.13 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+++|.|+.|+|||||++.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999876
No 240
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.013 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+++|.|+.|+|||||++.+.--
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999998763
No 241
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.65 E-value=0.02 Score=49.48 Aligned_cols=132 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccc-C--Cc-eeEEEEeCC----CCCHHHHHHHH----------HHHHhhccC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKT-H--FS-SRAWVTVGK----EYNKNELLRTV----------IKEFHSFSG 68 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~-~--~~-~~~~~~~~~----~~~~~~~~~~l----------~~~l~~~~~ 68 (263)
...+++|.|+.|+|||||++.++....... . +. .+.|+.-.. ..+..+.+... +..+....+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG 390 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987321111 0 11 233443221 12333322211 111111111
Q ss_pred CC--CccccccccHHHHH-HHHHHHhCCceEEEEEeCCC---CchhHHHHHHhccCC--CCCcEEEEEeCchhhhhhh
Q 039728 69 QP--TPVEIHKMEEMELI-TTLRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDN--KKCGRIIVTTRHMNVAKAC 138 (263)
Q Consensus 69 ~~--~~~~~~~~~~~~~~-~~~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~ 138 (263)
-. ........+..+.. -.+...+...+-+||||+-. +......+...+... ..+..||++|.+......+
T Consensus 391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 10 01112223333322 23445566778899999865 222323333333221 1255688888876665543
No 242
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.64 E-value=0.00094 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45889999999999999999875
No 243
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.64 E-value=0.00047 Score=51.94 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+|+|.|++|+||||++..+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998873
No 244
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.64 E-value=0.0022 Score=62.18 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=54.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
...+++.|+|++|+|||||+.+++... ...-..++|++.....+... +..+......-. .....+.++...
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~--i~~~~~~e~~l~ 451 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL--CSQPDTGEQALE 451 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCE--EECCSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeE--EcCCCCHHHHHH
Confidence 467899999999999999999998742 22334678988877665431 333322111100 111123445555
Q ss_pred HHHHHh-CCceEEEEEeCCCC
Q 039728 86 TLRGHL-KDKNYMVVFDDVWK 105 (263)
Q Consensus 86 ~~~~~l-~~~~~LlvlD~~~~ 105 (263)
.+.... ..+.-++|+|.+..
T Consensus 452 ~l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 452 ICDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTT
T ss_pred HHHHHHHhcCCCEEEECCHHH
Confidence 444333 23456999999863
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.63 E-value=0.0013 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++|+|.||.|+|||||+..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999984
No 246
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.63 E-value=0.0047 Score=49.11 Aligned_cols=25 Identities=44% Similarity=0.523 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|+|++|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678889999999999999999873
No 247
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.63 E-value=0.0012 Score=50.79 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998873
No 248
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.63 E-value=0.0012 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++++|.||+|+|||+|+..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 4467899999999999999999987
No 249
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.61 E-value=0.0011 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....|+|.|++|+||||+++.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999988
No 250
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.61 E-value=0.0054 Score=46.01 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHHH
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELIT 85 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (263)
....+.+++|+.|+||||.+...+.+.. ..... ++.+....+ .......++..+....... ... ...
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~k-Vli~k~~~d--~R~ge~~i~s~~g~~~~a~---~~~--~~~---- 92 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQH-AIVFKPCID--NRYSEEDVVSHNGLKVKAV---PVS--ASK---- 92 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCC-EEEEECC-------------------CCEE---ECS--SGG----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCE-EEEEEeccC--CcchHHHHHhhcCCeeEEe---ecC--CHH----
Confidence 3457889999999999999988887432 22333 333332211 1112223333332221100 000 001
Q ss_pred HHHHHhCCceEEEEEeCCC--CchhHHHHHHhccCCCCCcEEEEEeCc
Q 039728 86 TLRGHLKDKNYMVVFDDVW--KIDFWGDVEHALLDNKKCGRIIVTTRH 131 (263)
Q Consensus 86 ~~~~~l~~~~~LlvlD~~~--~~~~~~~l~~~l~~~~~~~~iliTsR~ 131 (263)
.+...+.++--++++|++. +.+.++.+ ..+.+ .+..||+|.+.
T Consensus 93 ~~~~~~~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 93 DIFKHITEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLD 137 (214)
T ss_dssp GGGGGCCSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECS
T ss_pred HHHHHHhcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecc
Confidence 1222222223489999986 33444333 33322 26689999984
No 251
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.61 E-value=0.00099 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 252
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.60 E-value=0.00095 Score=50.37 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.60 E-value=0.0012 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.++|+|.||+|+|||+|+..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.60 E-value=0.0013 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.435 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346889999999999999999876
No 255
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.60 E-value=0.0015 Score=53.34 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCC----ceeEEEEeCCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHF----SSRAWVTVGKE 49 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~----~~~~~~~~~~~ 49 (263)
....++.|+|++|+|||||+.+++......... ..++|++....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 356789999999999999999988732112111 23478887554
No 256
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.59 E-value=0.00088 Score=54.99 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+.++|+|++|+|||++|+.++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999983
No 257
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.58 E-value=0.00099 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.300 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999998875
No 258
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.58 E-value=0.0013 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999987
No 259
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.57 E-value=0.0014 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.....+|+|.|++|+||||+++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999999887
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.56 E-value=0.0015 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999865
No 261
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.55 E-value=0.002 Score=51.95 Aligned_cols=25 Identities=44% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+||||++..++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999887
No 262
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0011 Score=49.14 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+++|.|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6889999999999999988763
No 263
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.55 E-value=0.0015 Score=49.50 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+.|+|.|.+|+|||||+.+++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999999999999874
No 264
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.55 E-value=0.00098 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++|+|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999998
No 265
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.54 E-value=0.0021 Score=49.81 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45789999999999999999876
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.54 E-value=0.0014 Score=50.19 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.54 E-value=0.0014 Score=51.11 Aligned_cols=24 Identities=42% Similarity=0.482 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346889999999999999999876
No 268
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.54 E-value=0.0046 Score=51.62 Aligned_cols=25 Identities=44% Similarity=0.523 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...++++.|++|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999998873
No 269
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.54 E-value=0.0012 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++|+|.|++|+||||+++.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999987
No 270
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.54 E-value=0.013 Score=51.28 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|.|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 346889999999999999988766
No 271
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.53 E-value=0.0013 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.+.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45789999999999999999876
No 272
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0011 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...|+|+|++|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 273
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.53 E-value=0.0014 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
++|+|.|++|+|||||+..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 6899999999999999999987
No 274
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.53 E-value=0.0037 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.|++-|.-|+||||.+..+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999884
No 275
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0011 Score=51.12 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
....++.|.|++|+|||+++.+++.+. .......++|++...
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE 69 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC
Confidence 456789999999999999999987531 122233466777654
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.53 E-value=0.0012 Score=52.10 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++.|.|++|+|||||+.+++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 277
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.52 E-value=0.038 Score=48.46 Aligned_cols=132 Identities=18% Similarity=0.195 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccc-C--Cc-eeEEEEeCC----CCCHHHHHHHH----------HHHHhhccC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKT-H--FS-SRAWVTVGK----EYNKNELLRTV----------IKEFHSFSG 68 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~-~--~~-~~~~~~~~~----~~~~~~~~~~l----------~~~l~~~~~ 68 (263)
...+++|.|+.|+|||||++.+........ . +. .+.|+.-.. ..+..+.+... +..+....+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~ 460 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG 460 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987321111 1 11 223443211 12232222111 111111111
Q ss_pred --CCCccccccccHHHHH-HHHHHHhCCceEEEEEeCCC---CchhHHHHHHhccCC--CCCcEEEEEeCchhhhhhh
Q 039728 69 --QPTPVEIHKMEEMELI-TTLRGHLKDKNYMVVFDDVW---KIDFWGDVEHALLDN--KKCGRIIVTTRHMNVAKAC 138 (263)
Q Consensus 69 --~~~~~~~~~~~~~~~~-~~~~~~l~~~~~LlvlD~~~---~~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~~ 138 (263)
..........+..+.. -.+...+...+-+++||+-. +......+...+... ..+..+|++|.+.......
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 1111122233333332 23445566778899999854 222222333333221 2355688888887665543
No 278
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.52 E-value=0.0014 Score=48.12 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-|+|.|++|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 279
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.00079 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+++.|.|++|+|||||+..+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999887
No 280
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.51 E-value=0.0018 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|++|+|||||+..+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999874
No 281
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.50 E-value=0.017 Score=53.13 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKL 28 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~ 28 (263)
...+++|+||.|+||||+++.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999988
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.50 E-value=0.0015 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|+|++|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999998875
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.49 E-value=0.0014 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345889999999999999999876
No 284
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.49 E-value=0.0013 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+....++++||||+|||.+|..+++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 4456799999999999999999987
No 285
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.49 E-value=0.0014 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345889999999999999999876
No 286
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.49 E-value=0.0014 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+++|.|+.|+|||||++.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458899999999999999999873
No 287
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0018 Score=51.63 Aligned_cols=25 Identities=48% Similarity=0.671 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+||||++..++.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 288
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.48 E-value=0.0016 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999986
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.48 E-value=0.0017 Score=50.68 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999876
No 290
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.48 E-value=0.0017 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999876
No 291
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.47 E-value=0.0015 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999876
No 292
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.47 E-value=0.0017 Score=50.98 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345889999999999999999876
No 293
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.46 E-value=0.0032 Score=61.06 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=57.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCccccccccHHHHH
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELI 84 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (263)
-++.++|-|+||.|+||||||.++.. ..+..-...+|++..+..+..- ++.+........ ..+..+.++.+
T Consensus 1428 ~prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~--~~~p~~~e~~l 1498 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL--CSQPDTGEQAL 1498 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCE--EECCSSHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeE--EeCCCcHHHHH
Confidence 35678999999999999999999987 3444445677888877666543 455443322211 11222234555
Q ss_pred HHHHHHhC-CceEEEEEeCCC
Q 039728 85 TTLRGHLK-DKNYMVVFDDVW 104 (263)
Q Consensus 85 ~~~~~~l~-~~~~LlvlD~~~ 104 (263)
......++ +..-++|+|-+.
T Consensus 1499 ~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1499 EICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCST
T ss_pred HHHHHHHHcCCCCEEEEccHH
Confidence 55555554 345599999875
No 294
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.46 E-value=0.0016 Score=51.73 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccCCc-eeEEEEeC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFS-SRAWVTVG 47 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~-~~~~~~~~ 47 (263)
...+++|.|++|+|||||+..++.. ...... .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 4568999999999999999998873 222211 35566643
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.45 E-value=0.0018 Score=50.78 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345889999999999999999877
No 296
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.44 E-value=0.0023 Score=51.48 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....+++|+|++|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998873
No 297
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.43 E-value=0.002 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.-.++|.|++|+|||||+..+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 298
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.43 E-value=0.0054 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++|+|++|+||||++..+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999887765
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.42 E-value=0.0016 Score=50.42 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345889999999999999999887
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.42 E-value=0.0019 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345889999999999999999876
No 301
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.42 E-value=0.0052 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|++.|+.|+||||++..+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999874
No 302
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.41 E-value=0.018 Score=53.02 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999999973
No 303
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.41 E-value=0.0022 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999887
No 304
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.40 E-value=0.0033 Score=45.46 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+...|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678899999999999999999874
No 305
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.002 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.+.++|.|.+|+|||||+.+++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999873
No 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.40 E-value=0.0027 Score=46.44 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....|+|.|++|+|||||+..++..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 307
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.37 E-value=0.0023 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 308
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.37 E-value=0.0018 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|++|+|||||+..++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 309
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.36 E-value=0.0019 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345789999999999999999876
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.0021 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.||.|+|||||++.++-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 346889999999999999999876
No 311
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.33 E-value=0.0017 Score=55.47 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.-|+|+|++|+|||+||+.+...
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHH
Confidence 46889999999999999999983
No 312
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.33 E-value=0.0034 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|++|+|||||+..+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45677899999999999999999874
No 313
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.32 E-value=0.00093 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-++|+|++|+|||++|+.+.+.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999999873
No 314
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.31 E-value=0.0035 Score=50.25 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
++.++|.|+|=|||||||.+..+.-. ....-..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 46789999999999999999887663 222222355666553
No 315
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.30 E-value=0.0054 Score=49.42 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCCC-ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 3 NGRSE-RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 3 ~~~~~-~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++ .++++..|-||+||||++..+..
T Consensus 8 ~~~~gm~~i~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 8 KFNKGKTTFVFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp CCBTTBCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCchHHHHHHHHHH
Confidence 44455 68889999999999999988876
No 316
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.29 E-value=0.0024 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-+-|+|.|++|+||||+|..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457899999999999999999873
No 317
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.27 E-value=0.06 Score=45.99 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999886
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.27 E-value=0.002 Score=51.84 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..++++|+|+.|+|||||++.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999999985
No 319
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.27 E-value=0.0028 Score=51.72 Aligned_cols=25 Identities=48% Similarity=0.671 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+||||++..++.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3567999999999999999999877
No 320
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.26 E-value=0.0076 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++|.|+.|+||||++..++.
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999997766644
No 321
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.25 E-value=0.00077 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...++|.|++|+|||+|+.++.+.
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHH
Confidence 345688999999999999988874
No 322
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.24 E-value=0.0035 Score=48.66 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....++++.|.+|+||||++..++..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 345688999999999999999999863
No 323
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.0034 Score=50.95 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+.++|.|++|+||||+++.++.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4566799999999999999998876
No 324
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.22 E-value=0.0022 Score=50.03 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+...|+|.|+.|+||||+++.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999999883
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.21 E-value=0.0034 Score=45.21 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999874
No 326
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.21 E-value=0.0026 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|+.|+|||||++.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34789999999999999999876
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.21 E-value=0.0032 Score=46.34 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+...|+|.|.+|+|||||+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35677899999999999999999874
No 328
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.20 E-value=0.0029 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 346889999999999999999876
No 329
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0029 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 346889999999999999999876
No 330
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0032 Score=46.35 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|++|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999874
No 331
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.19 E-value=0.0028 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468899999999999999998773
No 332
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.19 E-value=0.0025 Score=49.95 Aligned_cols=21 Identities=52% Similarity=0.846 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.++|.|+.|+|||||+..++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999876
No 333
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.19 E-value=0.0033 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999999864
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.19 E-value=0.0027 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+.+|+|+.|+|||||+..+.-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999998865
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.18 E-value=0.0033 Score=45.58 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....-|+|.|.+|+|||||+..+...
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345567899999999999999998764
No 336
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.18 E-value=0.0034 Score=46.10 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|.+|+|||||+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567889999999999999999875
No 337
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.17 E-value=0.003 Score=51.93 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.+.-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 346889999999999999999876
No 338
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.17 E-value=0.0024 Score=47.76 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....|+|.|++|+|||||+..++..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999998863
No 339
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.17 E-value=0.0033 Score=47.33 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|++|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45667899999999999999999874
No 340
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.16 E-value=0.0027 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346889999999999999999875
No 341
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.15 E-value=0.0031 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 346889999999999999999875
No 342
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.14 E-value=0.0025 Score=50.87 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346889999999999999998876
No 343
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.14 E-value=0.0042 Score=44.93 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....-|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345667899999999999999999874
No 344
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.13 E-value=0.032 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|+.|+|||||+..+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 345789999999999999998876
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0029 Score=48.61 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999873
No 346
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.13 E-value=0.0037 Score=51.10 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+..+|+|+|.+|+|||||+..+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999876
No 347
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.12 E-value=0.0071 Score=51.13 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHH-HHHhCCcccccCCceeEEEEeCCCCC-HHHHHHH
Q 039728 10 VVAVVGVGGLGKTTLA-GKLFNNDGLKTHFSSRAWVTVGKEYN-KNELLRT 58 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 58 (263)
.++|.|.+|+|||+|+ ..+.++ ...--.++|+-++...+ ..++...
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~IGeR~~ev~e~~~~ 211 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVAIGQKASTISNVVRK 211 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEEESCCHHHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh---ccCCceEEEEEecCChHHHHHHHHH
Confidence 4578999999999996 566662 22222356777776533 3344444
No 348
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.12 E-value=0.0029 Score=44.99 Aligned_cols=22 Identities=45% Similarity=0.783 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.11 E-value=0.0029 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-|+|.|.+|+|||||+..+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4788999999999999999763
No 350
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.10 E-value=0.0026 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 346889999999999999999876
No 351
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.09 E-value=0.0033 Score=45.02 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
--|+|.|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999875
No 352
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.09 E-value=0.0027 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+-++++|++|+|||++|+.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999987
No 353
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.09 E-value=0.0037 Score=45.27 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+...-|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcC
Confidence 345567899999999999999999874
No 354
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.08 E-value=0.0039 Score=46.04 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....-|+|.|.+|+|||||+..+...
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345678899999999999999999875
No 355
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.08 E-value=0.0038 Score=52.98 Aligned_cols=25 Identities=48% Similarity=0.667 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++|.|+.|+|||||+..++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3567999999999999999999887
No 356
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.08 E-value=0.003 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 345789999999999999999875
No 357
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.07 E-value=0.0036 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.++|+|.||+|+|||||+..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 46899999999999999999876
No 358
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.07 E-value=0.0068 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|++|+||||++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 359
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.06 E-value=0.0064 Score=50.87 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCcccc-cCCc-eeEEEEeCCCC-CHHHHHHHH
Q 039728 11 VAVVGVGGLGKTTLAGKLFNNDGLK-THFS-SRAWVTVGKEY-NKNELLRTV 59 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~l 59 (263)
+.|.|.+|+|||+|+.+++++.... .+-+ .++|.-++... ...++..++
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~ 205 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDF 205 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHH
Confidence 5788999999999999988843221 1111 45566666543 344444443
No 360
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.06 E-value=0.0041 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+..+++|.|++|+|||||+..+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 361
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.06 E-value=0.0041 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+|+|.|++|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999986
No 362
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0035 Score=44.92 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788999999999999999874
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.05 E-value=0.017 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...|+|+|+.|+|||||+..+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45789999999999999999876
No 364
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.05 E-value=0.007 Score=45.90 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|++.|+.|+||||++..+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999884
No 365
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.05 E-value=0.0037 Score=52.95 Aligned_cols=90 Identities=13% Similarity=0.263 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCcHHHHH-HHHhCCcccccCCc-eeEEEEeCCCCC-HHHHHHHHHHHHh------hccCCCCccccccc-
Q 039728 9 SVVAVVGVGGLGKTTLA-GKLFNNDGLKTHFS-SRAWVTVGKEYN-KNELLRTVIKEFH------SFSGQPTPVEIHKM- 78 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~------~~~~~~~~~~~~~~- 78 (263)
..++|.|.+|+|||+|+ ..+.++ .. .+ .++|+-++.... ..++...+...=. -......+......
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 34578999999999995 577773 22 33 346777776432 3333333322100 00011111111111
Q ss_pred --cHHHHHHHHHHHhCCceEEEEEeCCC
Q 039728 79 --EEMELITTLRGHLKDKNYMVVFDDVW 104 (263)
Q Consensus 79 --~~~~~~~~~~~~l~~~~~LlvlD~~~ 104 (263)
.......+++. .++++|+++||+.
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 11223334443 5789999999985
No 366
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.04 E-value=0.0053 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+||||++..++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999877
No 367
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.03 E-value=0.011 Score=49.98 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHH-HHHhCCcccccCCc-eeEEEEeCCCCC-HHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLA-GKLFNNDGLKTHFS-SRAWVTVGKEYN-KNELLRTV 59 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~l 59 (263)
..++|.|.+|+|||+|+ ..+.++ . +.+ .++|+-++.... ..++...+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~ 212 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETL 212 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHH
Confidence 34688999999999995 566663 2 233 345777776533 33333333
No 368
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.03 E-value=0.0043 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|.+|+|||||+..+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999874
No 369
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.02 E-value=0.0067 Score=49.06 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
...+++++.|-||+||||++..++.. ....-..++.++...
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~ 54 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDP 54 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCS
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCC
Confidence 45788999999999999999888763 222222345555443
No 370
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.02 E-value=0.0072 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+++++.|-||+||||++..++.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 34568999999999999999988775
No 371
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.02 E-value=0.022 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~ 29 (263)
...+++|+||.|+||||+.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 46799999999999999999875
No 372
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.02 E-value=0.0042 Score=46.17 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 4 GRSERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 4 ~~~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
......-|+|.|.+|+|||||+..+...
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 3445667899999999999999998764
No 373
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.02 E-value=0.034 Score=42.50 Aligned_cols=20 Identities=35% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 039728 11 VAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~ 30 (263)
++|+|+.|+|||.++..++.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 78899999999999988876
No 374
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.01 E-value=0.0032 Score=46.01 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
++.|+|.+|+|||++|.+++.. . ..++|+.-..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~-~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----A-PQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----C-SSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----C-CCeEEEecCC
Confidence 3789999999999999999973 1 2356666544
No 375
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.01 E-value=0.0037 Score=44.52 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
--|+|.|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 376
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.99 E-value=0.0038 Score=44.48 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..-|+|.|.+|+|||||+..+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999999864
No 377
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.99 E-value=0.0036 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-|+|.|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999875
No 378
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.98 E-value=0.0054 Score=46.57 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|.+|+|||||+..++..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678899999999999999999874
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.97 E-value=0.0043 Score=44.81 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....-|+|.|.+|+|||||+..+...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34556899999999999999999864
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.97 E-value=0.0087 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|++.|+.|+||||++..+.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999884
No 381
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.97 E-value=0.0059 Score=44.10 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...--|+|.|.+|+|||||+..+...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 34456889999999999999998864
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.97 E-value=0.0058 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|+.|+||||++..+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999884
No 383
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.97 E-value=0.0025 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346889999999999999999865
No 384
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.96 E-value=0.0039 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999998864
No 385
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.96 E-value=0.011 Score=50.06 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHH-HHHhCCcccccCCc-eeEEEEeCCCCC-HHHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLA-GKLFNNDGLKTHFS-SRAWVTVGKEYN-KNELLRTVI 60 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~l~ 60 (263)
..++|.|.+|+|||+|+ .++.++ . ..+ .++|+-++.... ..++...+.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~ 226 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLR 226 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHH
Confidence 34688999999999995 577773 2 233 345777776533 334444443
No 386
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.96 E-value=0.004 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35788999999999999999864
No 387
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.95 E-value=0.0042 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|+.|+|||||++.++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346889999999999999999876
No 388
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.95 E-value=0.0034 Score=52.96 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
....+++|.|.||+|||+++.+++.+...+ -..++|++....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 456789999999999999999998753222 235778876543
No 389
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.95 E-value=0.0063 Score=48.57 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
.+.++|+|+|-||+||||++..++.. ....-..++.++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 35678888899999999999988773 222222456666554
No 390
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.94 E-value=0.0041 Score=44.25 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 039728 11 VAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 11 v~i~G~~G~GKTtLa~~~~~~ 31 (263)
|+|.|.+|+|||||+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998753
No 391
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.94 E-value=0.004 Score=45.63 Aligned_cols=23 Identities=43% Similarity=0.722 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 392
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.93 E-value=0.0048 Score=45.07 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34456789999999999999999874
No 393
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.93 E-value=0.008 Score=51.45 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCC-HHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYN-KNELLRT 58 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 58 (263)
-..++|.|++|+|||+|+.++.++ .+-+.++|+-++.... ..+++.+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 345789999999999999998762 1234677888877654 3344333
No 394
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.93 E-value=0.0041 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999988764
No 395
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.93 E-value=0.0059 Score=43.72 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999764
No 396
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.92 E-value=0.0075 Score=47.32 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|.+|+|||||..++...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 397
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.92 E-value=0.0048 Score=45.76 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+..-|+|.|++|+|||||+.++...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999863
No 398
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.90 E-value=0.0043 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999874
No 399
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.90 E-value=0.0057 Score=44.55 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+...-|+|.|.+|+|||||+..+...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567889999999999999999864
No 400
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.89 E-value=0.0043 Score=45.79 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.--|+|.|.+|+|||||+.+++.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999874
No 401
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.87 E-value=0.005 Score=45.57 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...-|+|.|.+|+|||||+..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999864
No 402
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.87 E-value=0.0051 Score=44.02 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998864
No 403
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.86 E-value=0.0047 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...++|.|++|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 404
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.84 E-value=0.0047 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..++..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3346889999999999999998864
No 405
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.84 E-value=0.0048 Score=44.82 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....-|+|.|++|+|||||+..+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45667889999999999999999863
No 406
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.84 E-value=0.0048 Score=44.06 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999864
No 407
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.83 E-value=0.0077 Score=50.40 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+.|.|.+|+|||+|+.+++++
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~ 170 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQ 170 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHH
Confidence 3578899999999999998874
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.83 E-value=0.0062 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 409
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.82 E-value=0.0061 Score=43.99 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999999864
No 410
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.82 E-value=0.0068 Score=49.63 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEE
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVT 45 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~ 45 (263)
...++|.|+.|+|||||++.+.. .... ..+.+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~--~~~~-~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ--EIPF-DQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT--TSCT-TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cCCC-CceEEEEC
Confidence 45789999999999999999988 3332 23455554
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.81 E-value=0.0068 Score=42.87 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+.+|+|+.|+||||++.+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999988764
No 412
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.80 E-value=0.0057 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....+|+++|.+|+||||+++.+..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999987
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.79 E-value=0.0073 Score=43.88 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999864
No 414
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.78 E-value=0.0051 Score=44.63 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999999853
No 415
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.78 E-value=0.0062 Score=43.53 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999999864
No 416
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.77 E-value=0.005 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
--|+|.|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35788999999999999999753
No 417
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.77 E-value=0.0069 Score=44.52 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998864
No 418
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.76 E-value=0.0073 Score=44.05 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....-|+|.|.+|+|||||+..+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.74 E-value=0.0057 Score=45.80 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|.+|+|||||+.+++..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567889999999999999999864
No 420
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.74 E-value=0.0091 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..++|+|++|+||||||+.+...
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 57899999999999999999883
No 421
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.73 E-value=0.0041 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+|+|+|++|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 422
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.73 E-value=0.0039 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+.++...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999874
No 423
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0071 Score=45.50 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.--|+|.|.+|+|||||+.+++.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999999985
No 424
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.72 E-value=0.0077 Score=44.36 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 425
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.72 E-value=0.0058 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 426
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.72 E-value=0.0056 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..-|+|.|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999864
No 427
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.72 E-value=0.0058 Score=44.98 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|.+|+|||||+.++...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999863
No 428
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.71 E-value=0.0076 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999764
No 429
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.71 E-value=0.0069 Score=46.39 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.....|+|.|.+|+|||||+..+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34567899999999999999999874
No 430
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.71 E-value=0.0071 Score=43.97 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..-|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999999864
No 431
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.70 E-value=0.012 Score=49.90 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHH-HHHhCCccc----ccCCc-eeEEEEeCCCCC-HHHHHHHH
Q 039728 9 SVVAVVGVGGLGKTTLA-GKLFNNDGL----KTHFS-SRAWVTVGKEYN-KNELLRTV 59 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa-~~~~~~~~~----~~~~~-~~~~~~~~~~~~-~~~~~~~l 59 (263)
..++|.|.+|+|||+|| ..+.++... ..+.+ .++|+-++...+ ..++...+
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~ 220 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL 220 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHH
Confidence 34578999999999994 566663221 01233 356777776533 33444444
No 432
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.70 E-value=0.0058 Score=44.59 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999864
No 433
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.69 E-value=0.012 Score=47.91 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++++..|-||+||||++..+..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHH
Confidence 45677888899999999999988766
No 434
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0085 Score=43.80 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+.++...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999863
No 435
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.68 E-value=0.006 Score=44.24 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345788999999999999999864
No 436
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.68 E-value=0.055 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++|+|+.|+|||||++.+..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999998876
No 437
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.68 E-value=0.0059 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
-|+|.|.+|+|||+|+.+++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3788999999999999999864
No 438
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.68 E-value=0.0044 Score=51.95 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.++|+|+|++|+||||++..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998773
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.67 E-value=0.007 Score=45.21 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 440
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.67 E-value=0.0061 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....|+|.|.+|+|||||..++...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 4456899999999999999999874
No 441
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.66 E-value=0.0069 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+|+|+|++|+||||+++.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 442
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0081 Score=43.41 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+..--|+|.|.+|+|||||+..+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34456899999999999999998764
No 443
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.65 E-value=0.0061 Score=44.99 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 444
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.65 E-value=0.009 Score=46.59 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
++|.|.|-||+||||++..+.... ...-..++.++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCC
Confidence 567778999999999999887732 22222456666543
No 445
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.64 E-value=0.0093 Score=43.98 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999875
No 446
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.63 E-value=0.0066 Score=44.92 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999874
No 447
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.62 E-value=0.0064 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..-|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999874
No 448
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.62 E-value=0.0052 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
+..+++|+|++|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 457899999999999999999987
No 449
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.62 E-value=0.0065 Score=48.42 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+...|+|.|.+|+|||||+..++..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999874
No 450
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.61 E-value=0.0065 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999999864
No 451
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.61 E-value=0.008 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999999754
No 452
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.60 E-value=0.022 Score=58.57 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVI 60 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 60 (263)
.+.|.++|++|+|||+++..++.. .. .+ ..+.++++...+.......+-
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~--l~-~~-~~~~infS~~Tta~~l~~~~e 1352 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRA--FP-DF-EVVSLNFSSATTPELLLKTFD 1352 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGG--CT-TE-EEEEECCCTTCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHh--CC-CC-ceEEEEeeCCCCHHHHHHHHh
Confidence 356789999999999998887762 22 22 245677777777655555543
No 453
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0062 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45789999999999999998863
No 454
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.60 E-value=0.0074 Score=44.95 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.-+.+++|++|+|||++|.....
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 34788999999999999987543
No 455
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.60 E-value=0.0077 Score=50.62 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccC--CceeEEEEeCCCC-CHHHHHHHHH
Q 039728 10 VVAVVGVGGLGKTTLAGKLFNNDGLKTH--FSSRAWVTVGKEY-NKNELLRTVI 60 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~ 60 (263)
.++|.|.+|+|||+|+.+++.+...... -..++|.-++... ...++..++.
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~ 207 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFE 207 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHH
Confidence 3467899999999999998884332111 1245676666543 3444444443
No 456
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.59 E-value=0.0078 Score=47.12 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|+|.|++|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 457
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.58 E-value=0.0079 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.+..+++|.|++|+||||++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568899999999999999999875
No 458
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.58 E-value=0.023 Score=42.52 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..|++-|.-|+||||++..+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999998884
No 459
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.58 E-value=0.0069 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+++|.|++|+|||||+..+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 57899999999999999999873
No 460
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0065 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..++..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
No 461
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.56 E-value=0.006 Score=44.74 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 462
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.56 E-value=0.0054 Score=44.58 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=11.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+...-|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp SEEEEEEEECCCCC------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34566899999999999999998764
No 463
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.56 E-value=0.0087 Score=43.48 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 345788999999999999998764
No 464
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.55 E-value=0.006 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.-.++|.|++|+||||++..+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 44678999999999999999987
No 465
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.54 E-value=0.008 Score=44.39 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...--|+|.|.+|+|||||+..+...
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc
Confidence 44556889999999999999877763
No 466
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.54 E-value=0.0055 Score=48.86 Aligned_cols=21 Identities=52% Similarity=0.779 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 039728 10 VVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 10 ~v~i~G~~G~GKTtLa~~~~~ 30 (263)
-|+|.|++|+|||||+..++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999765
No 467
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.54 E-value=0.0084 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
No 468
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.54 E-value=0.0073 Score=48.16 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLF 29 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~ 29 (263)
..+++|.|++|+|||||+..+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999998
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.53 E-value=0.007 Score=45.46 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999874
No 470
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.53 E-value=0.0073 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999875
No 471
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.52 E-value=0.0069 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 472
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.52 E-value=0.0097 Score=47.02 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGK 48 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 48 (263)
.++|.|.|-||+||||++..+.... ...-..++.++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L--a~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 3677789999999999999988742 22222455666544
No 473
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.52 E-value=0.0055 Score=46.21 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.+...|+|.|.+|+|||||+..++..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34667899999999999999999875
No 474
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.51 E-value=0.0085 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999999864
No 475
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.51 E-value=0.0071 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.|+|.|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999874
No 476
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.50 E-value=0.012 Score=43.12 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..-|+|.|.+|+|||||+..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999874
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.50 E-value=0.0084 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+|+++|.+|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999998873
No 478
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.50 E-value=0.0099 Score=43.51 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999764
No 479
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.50 E-value=0.0083 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
...+++|.|++|+|||||+..++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 445899999999999999999876
No 480
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.50 E-value=0.0092 Score=52.63 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKE 49 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 49 (263)
.+..+|+|+||+|||+++..++.. ........+.+...+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~--l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYH--LARQGNGPVLVCAPSN 234 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH--HHTSSSCCEEEEESSH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEeCcH
Confidence 357899999999999988777652 2211223455555543
No 481
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.49 E-value=0.0081 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+..+|+|+|++|+||||+++.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999883
No 482
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.49 E-value=0.008 Score=43.70 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456889999999999999999874
No 483
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.49 E-value=0.01 Score=43.59 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999999864
No 484
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.48 E-value=0.0095 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999999764
No 485
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.48 E-value=0.0066 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..+|+|.|+.|+||||+++.+.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999883
No 486
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.47 E-value=0.0079 Score=53.31 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCCHHHHHHH
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYNKNELLRT 58 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (263)
..+.+|+||||+|||+.+.++... .+... ..+.++..+....+.+...
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~-l~~~~--~~ILv~a~TN~AvD~i~er 252 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQ-AVKQG--LKVLCCAPSNIAVDNLVER 252 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHH-HHHTT--CCEEEEESSHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH-HHhCC--CeEEEEcCchHHHHHHHHH
Confidence 357899999999999776665543 22222 2455555554444444333
No 487
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.46 E-value=0.0077 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
.--|+|.|.+|+|||||+..+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 44678999999999999966654
No 488
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.46 E-value=0.0098 Score=44.21 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+...-|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999764
No 489
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0081 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
.--|+|.|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 490
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.42 E-value=0.01 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
....|+|.|.+|+|||||+..++..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 491
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.011 Score=43.46 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 6 SERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 6 ~~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...--|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34456888999999999999999764
No 492
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.41 E-value=0.0091 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 039728 9 SVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 9 ~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
+.++|.|++|+|||+++..++..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999998874
No 493
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.0074 Score=51.05 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.++.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3467899999999999999998773
No 494
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.38 E-value=0.0089 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
..--|+|.|.+|+|||||+..+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 495
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.37 E-value=0.0089 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
..+++|.|++|+|||||+..+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 35789999999999999999987
No 496
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.35 E-value=0.014 Score=43.27 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=27.4
Q ss_pred eEEEEE-cCCCCcHHHHHHHHhCCcccccCCceeEEEEeCCCCC
Q 039728 9 SVVAVV-GVGGLGKTTLAGKLFNNDGLKTHFSSRAWVTVGKEYN 51 (263)
Q Consensus 9 ~~v~i~-G~~G~GKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (263)
++|.|+ +-||+||||++..+... ....-..++.++.....+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCC
Confidence 466666 77999999999998874 332333466677665443
No 497
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.33 E-value=0.0089 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...+++|.|+.|+|||||++.+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999883
No 498
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.31 E-value=0.0093 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 8 RSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 8 ~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...|++.|+.|+||||++..+.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 499
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.31 E-value=0.011 Score=49.35 Aligned_cols=26 Identities=42% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 039728 5 RSERSVVAVVGVGGLGKTTLAGKLFN 30 (263)
Q Consensus 5 ~~~~~~v~i~G~~G~GKTtLa~~~~~ 30 (263)
....++.+|.|++|+|||+++.+.+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 46788999999999999999999886
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.31 E-value=0.012 Score=43.96 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 039728 7 ERSVVAVVGVGGLGKTTLAGKLFNN 31 (263)
Q Consensus 7 ~~~~v~i~G~~G~GKTtLa~~~~~~ 31 (263)
...-|+|.|.+|+|||||+..++..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
Done!