Citrus Sinensis ID: 039729

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MYTENSVSDSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPTNSSFRTRGATTHESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRRKDIDTIKISLSLLS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEccccHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mytensvsdsEFAILESIRQYLlnddfdnvpsetsisvnddplinsptnssfrtrgatthesHVRVFYrgvrrrpwgkfaaeirdpnkkngarvwlgtydtpegaaLAYDRAAfnmrgskaklnfphligsnvapplrvtkkrgsssssnytlhlqsespnskrrkdiDTIKISLSLLS
Flexible Loop (DISEMBL)
mytensvsdseFAILESIRQYLLNDDFDNVPSEtsisvnddplinsptnssfrtrgattheshvrvfyrgvrrrpwgkfaaeirdpnkkngarvWLGTYDTPEGAALAYDRAAFNMRGSKAKLnfphligsnvapplrVTKKrgsssssnytlhlqsespnskrrkdidtikislslls
Low Complexity Region (SEG)
MYTENSVSDSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPTNSSFRTRGATTHESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRRKDIDTIKISLSLLS
Disordered region (IsUnstruct)
***********FAILESIRQYLLNDDF**********************************SHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLIGS************************************************
Disordered Region (DISOPRED)
****NSVSDSEFAILESIRQYLLNDD********************************************VRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHL********************************************ISLS***
Disordered Region (DISEMBL)
*********SEFAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPTNSSFRTRGATTHESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLIGSNVAPPLR***************************KDIDTIKISLSLLS
Disordered Region (DISPRO)
***********FA****I*********************************************VRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLI**************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYTENSVSDSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPTNSSFRTRGATTHESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRRKDIDTIKISLSLLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q8L9K1	226	Ethylene-responsive trans	yes	no	0.860	0.681	0.511	1e-31
Q40479	233	Ethylene-responsive trans	N/A	no	0.614	0.472	0.614	6e-30
Q40476	236	Ethylene-responsive trans	N/A	no	0.547	0.415	0.638	1e-28
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.547	0.413	0.646	2e-28
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.418	0.307	0.75	2e-26
O80338	243	Ethylene-responsive trans	no	no	0.418	0.308	0.710	7e-25
O80337	268	Ethylene-responsive trans	no	no	0.396	0.264	0.722	7e-24
P93007	218	Ethylene-responsive trans	no	no	0.351	0.288	0.753	4e-22
O04681	161	Pathogenesis-related gene	N/A	no	0.340	0.378	0.758	2e-21
Q8VY90	221	Ethylene-responsive trans	no	no	0.614	0.497	0.484	2e-21

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 108/174 (62%), Gaps = 20/174 (11%)

Query: 6   SVSDSE-FAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPT--NSSFRTRGATTHES 62
           SV DS+  AI  ++R        D V S  + SV   P + SP   N    T+ + +H  
Sbjct: 37  SVDDSQDMAIYNTLR--------DAVSSGWTPSV---PPVTSPAEENKPPATKASGSHAP 85

Query: 63  HVR-VFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKA 121
             + + YRGVRRRPWGKFAAEIRDP KKNGARVWLGTY+TPE AA+AYDRAAF +RGSKA
Sbjct: 86  RQKGMQYRGVRRRPWGKFAAEIRDP-KKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKA 144

Query: 122 KLNFPHLIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRRKDIDTIKISL 175
           KLNFPHLIGS    P+R+  +R S   S  +  L SE    KR   +D  + SL
Sbjct: 145 KLNFPHLIGSCKYEPVRIRPRRRSPEPS-VSDQLTSE---QKRESHVDDGESSL 194

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  130 bits (326), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 4/114 (3%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP  KNGARVWLGTY+T E AALAYD+AA+ MRGSKA LNFPH
Sbjct: 99  YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 157

Query: 128 LIGSNVAPPLRVTKKRGS--SSSSNYTLHLQSESPNSKRRKDIDTIKISLSLLS 179
            IG N   P+R+T KR S   +SS+ +  L++ SP  +RRK +   K  L + S
Sbjct: 158 RIGLNEPEPVRLTAKRRSPEPASSSISSALENGSPK-RRRKAVAAKKAELEVQS 210

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 77/108 (71%), Gaps = 10/108 (9%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVRRRPWGKFAAEIRDP  KNGARVWLGTY+T E AA+AYD+AA+ MRGSKA LNFPH
Sbjct: 105 YRGVRRRPWGKFAAEIRDP-AKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPH 163

Query: 128 LIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNS---KRRKDIDTIK 172
            IG N   P+RVT KR +S          S S NS   +RRK + T K
Sbjct: 164 RIGLNEPEPVRVTAKRRASPEP------ASSSENSSPKRRRKAVATEK 205

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 76/99 (76%), Gaps = 1/99 (1%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP  KNGARVWLGTY+T E AALAYD+AA+ MRGSKA LNFPH
Sbjct: 103 YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 161

Query: 128 LIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRRK 166
            IG N   P+R+T KR S   ++ ++   SE+   KRR+
Sbjct: 162 RIGLNEPEPVRLTVKRRSPEPASSSISPASENSLPKRRR 200

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 63/76 (82%), Gaps = 1/76 (1%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP  KNGARVWLGTY++ E AALAY +AAF MRG+KA LNFPH
Sbjct: 107 YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPH 165

Query: 128 LIGSNVAPPLRVTKKR 143
            IG N   P+RVT KR
Sbjct: 166 RIGLNEPEPVRVTVKR 181

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  113 bits (282), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP  KNGARVWLGT++T E AALAYD AAF MRGS+A LNFP 
Sbjct: 117 YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175

Query: 128 LIGSNVAPPLRVTKKR 143
            + S    P+R+T KR
Sbjct: 176 RVNSGEPDPVRITSKR 191

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  109 bits (273), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 59/72 (81%), Gaps = 1/72 (1%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP  KNGARVWLGT++T E AALAYDRAAF MRGS+A LNFP 
Sbjct: 148 YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206

Query: 128 LIGSNVAPPLRV 139
            + S    P+R+
Sbjct: 207 RVNSGEPDPVRI 218

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 53/65 (81%), Gaps = 2/65 (3%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGK+AAEIRDPNK   ARVWLGT+DT E AALAYD+AAF  RG KAKLNFP 
Sbjct: 70  YRGVRQRPWGKWAAEIRDPNK--AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPE 127

Query: 128 LIGSN 132
            I  N
Sbjct: 128 HIRVN 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 54/62 (87%), Gaps = 1/62 (1%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVRRRPWGK+AAEIRD + ++GARVWLGT++T E AALAYDRAAF MRG+KA LNFP 
Sbjct: 59  YRGVRRRPWGKYAAEIRD-SARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPS 117

Query: 128 LI 129
            I
Sbjct: 118 EI 119

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 73/128 (57%), Gaps = 18/128 (14%)

Query: 15  LESIRQYLLND--DFDNVPSE------TSISVNDDPL--INSPTNSSFRTRGATTHESHV 64
           L+ I Q+LL D    D   S       +++S    PL  I  PT +         H    
Sbjct: 16  LDLITQHLLTDFPSLDTFASTIHHCTTSTLSQRKPPLATIAVPTTAPVVQENDQRH---- 71

Query: 65  RVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLN 124
              YRGVRRRPWGK+AAEIRDPNKK G RVWLGT+DT   AA  YD+AAF +RGSKA LN
Sbjct: 72  ---YRGVRRRPWGKYAAEIRDPNKK-GVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILN 127

Query: 125 FPHLIGSN 132
           FP   G +
Sbjct: 128 FPLEAGKH 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
351723731	202	ethylene-responsive element binding prot	0.748	0.663	0.562	7e-35
255630234	187	unknown [Glycine max]	0.748	0.716	0.562	1e-34
356523030	155	PREDICTED: ethylene-responsive transcrip	0.737	0.851	0.561	6e-34
356531816	203	PREDICTED: ethylene-responsive transcrip	0.692	0.610	0.569	3e-33
388509800	208	unknown [Medicago truncatula]	0.703	0.605	0.583	4e-31
351723181	223	uncharacterized protein LOC100527194 [Gl	0.877	0.704	0.472	4e-31
255541048	221	Ethylene-responsive transcription factor	0.899	0.728	0.415	5e-31
255541050	225	Ethylene-responsive transcription factor	0.765	0.608	0.450	7e-31
21594007	226	putative ethylene response element bindi	0.871	0.690	0.505	8e-31
292668939	278	AP2 domain class transcription factor [M	0.592	0.381	0.672	3e-30

>gi|351723731|ref|NP_001237801.1| ethylene-responsive element binding protein 1 [Glycine max] gi|21304712|gb|AAM45475.1| ethylene-responsive element binding protein 1 [Glycine max]

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 98/151 (64%), Gaps = 17/151 (11%)

Query: 9   DSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLIN------SPTNSSFRTRGATT--- 59
           DS+FA LES++QYLL  D  N+ SET  + + DP  +         N +FR+  AT    
Sbjct: 7   DSDFAFLESVQQYLLGHDSINLMSETHQAASHDPFSDPNKCDGDSGNIAFRSEDATAVVA 66

Query: 60  --HESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMR 117
             H       YRGVRRRPWGKFAAEIRDP KKNGARVWLGTYDT E AALAYD+AAF MR
Sbjct: 67  RDHAPPTWKHYRGVRRRPWGKFAAEIRDP-KKNGARVWLGTYDTEEKAALAYDKAAFKMR 125

Query: 118 GSKAKLNFPHLIGSNVA-----PPLRVTKKR 143
           G KAKLNFPHLI S+ +     P +  T KR
Sbjct: 126 GQKAKLNFPHLIDSDNSDELSEPVMMTTSKR 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630234|gb|ACU15472.1| unknown [Glycine max]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 98/151 (64%), Gaps = 17/151 (11%)

Query: 9   DSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLIN------SPTNSSFRTRGATT--- 59
           DS+FA LES++QYLL  D  N+ SET  + + DP  +         N +FR+  AT    
Sbjct: 7   DSDFAFLESVQQYLLGHDSINLMSETHQAASHDPFSDPNKCDGDSGNIAFRSEDATAVVA 66

Query: 60  --HESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMR 117
             H       YRGVRRRPWGKFAAEIRDP KKNGARVWLGTYDT E AALAYD+AAF MR
Sbjct: 67  RDHAPPTWKHYRGVRRRPWGKFAAEIRDP-KKNGARVWLGTYDTEEKAALAYDKAAFKMR 125

Query: 118 GSKAKLNFPHLIGSNVA-----PPLRVTKKR 143
           G KAKLNFPHLI S+ +     P +  T KR
Sbjct: 126 GQKAKLNFPHLIDSDNSDELSEPVMMTTSKR 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523030|ref|XP_003530145.1| PREDICTED: ethylene-responsive transcription factor 13-like [Glycine max]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 105/146 (71%), Gaps = 14/146 (9%)

Query: 6   SVSDSEFAILESIRQYLL--NDDFDNVPSETSISVNDDPLINSP-------TNSSFRTRG 56
           ++   +FA+LESI++YLL  N+DF+++    +   N+   +NSP       T ++   RG
Sbjct: 7   TLESDDFALLESIQRYLLDDNEDFNSLTEVLATPNNNVNAVNSPLSSLGHATTAATEGRG 66

Query: 57  ATTHES---HVR-VFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRA 112
           A++ E+   HVR   Y+GVRRRPWGKFAAEIRDPN+ NGARVWLGTY++ E AALAYDRA
Sbjct: 67  ASSAEARGGHVRNQNYKGVRRRPWGKFAAEIRDPNR-NGARVWLGTYNSAEDAALAYDRA 125

Query: 113 AFNMRGSKAKLNFPHLIGSNVAPPLR 138
           AF MRGSKAKLNFPHLIG + A P R
Sbjct: 126 AFEMRGSKAKLNFPHLIGCSDAEPSR 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531816|ref|XP_003534472.1| PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max]

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 90/137 (65%), Gaps = 13/137 (9%)

Query: 9   DSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPTNSS------FRTRGAT---- 58
           DS+F  LES++QYLL  D  N+  ET  + + DP  +   +        FR+  AT    
Sbjct: 7   DSDFEFLESVQQYLLGHDSVNLMPETQQTASHDPFSDPKCDGDLENIIVFRSEDATAVVA 66

Query: 59  --THESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNM 116
              H       YRGVRRRPWGKFAAEIRDP KKNGARVWLGTYDT E AALAYD+AAF M
Sbjct: 67  RDVHAPPTWKHYRGVRRRPWGKFAAEIRDP-KKNGARVWLGTYDTEEKAALAYDKAAFKM 125

Query: 117 RGSKAKLNFPHLIGSNV 133
           RG KAKLNFPHLI S++
Sbjct: 126 RGRKAKLNFPHLIDSDM 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509800|gb|AFK42966.1| unknown [Medicago truncatula]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 92/132 (69%), Gaps = 6/132 (4%)

Query: 5   NSVSDSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPTNSSFRTRGATTHESHV 64
           ++ +DS+FA LE I+QYLL   FD+    TS   +  P  ++ +++    R   T     
Sbjct: 3   STTNDSDFAYLEHIQQYLL---FDDSSFLTSYQPSPSPKSDNESDTIVEAREVNTPPIWK 59

Query: 65  RVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLN 124
           R  Y+GVRRRPWGKFAAEIRDP KKNGARVWLGTY T E AALAYD+AAF MRG KAKLN
Sbjct: 60  R--YKGVRRRPWGKFAAEIRDP-KKNGARVWLGTYVTEEEAALAYDKAAFKMRGRKAKLN 116

Query: 125 FPHLIGSNVAPP 136
           FPHLIGS+V  P
Sbjct: 117 FPHLIGSDVFTP 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723181|ref|NP_001236246.1| uncharacterized protein LOC100527194 [Glycine max] gi|255631758|gb|ACU16246.1| unknown [Glycine max]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 27/184 (14%)

Query: 10  SEFAILESIRQYLLN--DDFDNVPSETSISVNDDPLINS-PTNSSFRTRGATTHESHV-- 64
            +F+ +ESI+ YLL    DF+ + + ++  +   P  NS P++++FR  G    E  +  
Sbjct: 7   CDFSSVESIQHYLLELEHDFNTLMNASNHEICYSPTYNSFPSSTTFRLEGVHDAEGSLAC 66

Query: 65  --------RVF--------YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALA 108
                   R F        YRGVRRRPWGKFAAEIRDP KKNGAR+WLGT +T E A LA
Sbjct: 67  KREHPKVEREFHAPPAWKRYRGVRRRPWGKFAAEIRDP-KKNGARIWLGTCETEEEAGLA 125

Query: 109 YDRAAFNMRGSKAKLNFPHLIGSNVAP--PLRVTKK--RGSSSSSNYTLHLQSESPNSKR 164
           YDRAAF MRGSKAKLNFPHLIGS+ AP  P+RV  K  + +   S+ +     ++  SKR
Sbjct: 126 YDRAAFKMRGSKAKLNFPHLIGSH-APLKPIRVLTKTLKQNLLESDLSYSSAPQTQESKR 184

Query: 165 RKDI 168
           RK++
Sbjct: 185 RKNL 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541048|ref|XP_002511588.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548768|gb|EEF50257.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 114/224 (50%), Gaps = 63/224 (28%)

Query: 1   MYTENSVSDSEFAILESIRQYLLND-------------------------------DFDN 29
           M+  N+    EF + +SI+QYLL D                               D D+
Sbjct: 1   MWGGNTADYGEFPLFDSIQQYLLEDHEFQTLTSVPPFNSFQENSSLTSLLLTDPSFDVDD 60

Query: 30  VPSETSISVNDDPLINSPTNSSFRTRG------------ATTHESHVR------------ 65
           +    S S +   L++   NSS +               A+T E  V             
Sbjct: 61  IDDRISCSFSSTDLLDEWINSSDQLDSTVNIKAEIPDEVASTLEDAVTSPNAETAGKKNA 120

Query: 66  ----VFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKA 121
                 YRGVRRRPWGK+AAEIRDP KKNGARVWLGTY+TPE AALAYD+AAF MRG KA
Sbjct: 121 PSKGWQYRGVRRRPWGKYAAEIRDP-KKNGARVWLGTYETPEDAALAYDQAAFKMRGCKA 179

Query: 122 KLNFPHLIGSN-VAPPLRVTKKRGSSSSSNYTLHLQSESPNSKR 164
           KLNFPHLIGSN   PP+RV+ KR S   +  TL +  +SP  +R
Sbjct: 180 KLNFPHLIGSNDYQPPVRVSPKRRSLDPT--TLLINHDSPKRRR 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541050|ref|XP_002511589.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548769|gb|EEF50258.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 106/191 (55%), Gaps = 54/191 (28%)

Query: 1   MYTENS-VSDSEFAILESIRQYLLNDDFDNVP--------SETSI----SVNDDPL---- 43
           M+  NS ++  + A L+SIRQYLL DDF+ +P        S TS+    + N  P     
Sbjct: 1   MFGANSSLAGDDLAFLDSIRQYLLEDDFETLPKVNLFDCSSSTSLPSIGACNGLPFKLDN 60

Query: 44  --------INSPTNSSF----------------RTRGATTHESHVRVF-----------Y 68
                   I +P  S F                 ++ A T E  V +            Y
Sbjct: 61  LLDIDEENIETPL-SQFDSEVEKTTVPAATIISESQKAVTSEEEVAMALKENTPSKGCQY 119

Query: 69  RGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHL 128
           RGVRRRPWGK+AAEIRDP KKNGAR+WLGTY+ PE AALAYDRAAF MRG++AKLNFPHL
Sbjct: 120 RGVRRRPWGKYAAEIRDP-KKNGARIWLGTYEKPEDAALAYDRAAFKMRGARAKLNFPHL 178

Query: 129 IGSNVAPPLRV 139
           IGS+   P+R 
Sbjct: 179 IGSDEYEPIRA 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594007|gb|AAM65925.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana]

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 107/172 (62%), Gaps = 16/172 (9%)

Query: 6   SVSDSE-FAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPTNSSFRTRGATTHESHV 64
           SV DS+  AI  ++R  + +    +VP  TS +  D P           T+ + +H    
Sbjct: 37  SVDDSQDMAIYNTLRDAVSSAWTPSVPPVTSPAEEDKPPA---------TKASGSHAPRQ 87

Query: 65  R-VFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKL 123
           + + YRGVRRRPWGKFAAEIRDP KKNGARVWLGTY+TPE AA+AYDRAAF +RGSKAKL
Sbjct: 88  KGMQYRGVRRRPWGKFAAEIRDP-KKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKL 146

Query: 124 NFPHLIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRRKDIDTIKISL 175
           NFPHLIGS    P+R+  +R S   S  +  L SE    KR   +D  K SL
Sbjct: 147 NFPHLIGSCKYEPVRIRPRRRSPEPS-VSDQLTSE---QKRESHVDDGKSSL 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668939|gb|ADE41124.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 80/107 (74%), Gaps = 1/107 (0%)

Query: 59  THESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRG 118
           TH    R  +RGVRRRPWGK+AAEIRDP KKNGARVWLGTY+T EGAALAYD+AAF +RG
Sbjct: 121 THTPPSRQHFRGVRRRPWGKYAAEIRDP-KKNGARVWLGTYETAEGAALAYDQAAFKIRG 179

Query: 119 SKAKLNFPHLIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRR 165
           SKAKLNFPHLIGS    P+RVT KR     S  +   +S SP  KRR
Sbjct: 180 SKAKLNFPHLIGSEGYEPVRVTVKRRVPEFSTSSSLSESGSPKPKRR 226

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.832	0.613	0.471	8.8e-32
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.893	0.707	0.502	1.6e-31
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.458	0.305	0.710	4.8e-31
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.608	0.359	0.540	7.4e-27
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.675	0.495	0.464	8.8e-23
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.648	0.481	0.476	3.4e-22
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.363	0.295	0.652	1.2e-21
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.541	0.391	0.537	3e-21
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.502	0.647	0.531	3.9e-21
TAIR|locus:2176511	131	AT5G43410 [Arabidopsis thalian	0.435	0.595	0.630	3.9e-21

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 75/159 (47%), Positives = 96/159 (60%)

Query:    22 LLNDDFDNVPSETSIS-VNDDPLINSPTNSSFRT------RGATTHESHVRV-FYRGVRR 73
             LL D F    S + +S + D P +      +F        +     E+ V+   YRGVR+
Sbjct:    63 LLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQ 122

Query:    74 RPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLIGSNV 133
             RPWGKFAAEIRDP  KNGARVWLGT++T E AALAYD AAF MRGS+A LNFP  + S  
Sbjct:   123 RPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGE 181

Query:   134 APPLRVTKKRGSSSSSNYTLHLQS-ESPNSKRRKDIDTI 171
               P+R+T KR SSSSS+ +    S E+   KRR+  + +
Sbjct:   182 PDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRRKAENL 220

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 86/171 (50%), Positives = 106/171 (61%)

Query:     8 SDSEFAILESIRQYLLNDDFDNVPSETSISVNDDPLINSPT--NSSFRTRGATTHESHVR 65
             SD   ++ +S    + N   D V S  + SV   P + SP   N    T+ + +H    +
Sbjct:    32 SDLPLSVDDSQDMAIYNTLRDAVSSGWTPSV---PPVTSPAEENKPPATKASGSHAPRQK 88

Query:    66 -VFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLN 124
              + YRGVRRRPWGKFAAEIRDP KKNGARVWLGTY+TPE AA+AYDRAAF +RGSKAKLN
Sbjct:    89 GMQYRGVRRRPWGKFAAEIRDP-KKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLN 147

Query:   125 FPHLIGSNVAPPLRVTKKRGSSSSSNYTLHLQSESPNSKRRKDIDTIKISL 175
             FPHLIGS    P+R+  +R S   S  +  L SE    KR   +D  + SL
Sbjct:   148 FPHLIGSCKYEPVRIRPRRRSPEPS-VSDQLTSEQ---KRESHVDDGESSL 194

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 59/83 (71%), Positives = 66/83 (79%)

Query:    68 YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
             YRGVR+RPWGKFAAEIRDP  KNGARVWLGT++T E AALAYDRAAF MRGS+A LNFP 
Sbjct:   148 YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206

Query:   128 LIGSNVAPPLRVTKKRGSSSSSN 150
              + S    P+R+  KR S SSSN
Sbjct:   207 RVNSGEPDPVRIKSKRSSFSSSN 229

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 276 (102.2 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 66/122 (54%), Positives = 79/122 (64%)

Query:    68 YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
             YRGVR+RPWGKFAAEIRDP  KNGARVWLGT+D+ E AA+AYDRAA+ MRGS+A LNFP 
Sbjct:   149 YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFPL 207

Query:   128 LIGSNVAPPLRVT---KKR--------GSSSSSNYTLHLQSESPNS-KRRKDIDTIKISL 175
              IGS +A          KR        GSSS S+ +    S S  S KRRK  +    S+
Sbjct:   208 RIGSEIAAAAAAAAAGNKRPYPDPASSGSSSPSSSSSSSSSSSSGSPKRRKRGEAAAASM 267

Query:   176 SL 177
             ++
Sbjct:   268 AM 269

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 59/127 (46%), Positives = 74/127 (58%)

Query:     4 ENSVSDSEFAILESI--RQYLLNDDFDN--VPSETSISVNDDPLINSPTNSSFRTRGATT 59
             ENS S S ++  ES    +  L+  FD   + S  + +  DD      +      + AT 
Sbjct:    15 ENS-SSSSWSSQESFLWEESFLHQSFDQSFLLSSPTDNYCDDFFAFESSIIKEEGKEATV 73

Query:    60 HESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGS 119
                     YRGVR+RPWGKFAAEIRD  +K G RVWLGT+DT E AALAYD+AAF ++GS
Sbjct:    74 AAEEEEKSYRGVRKRPWGKFAAEIRDSTRK-GIRVWLGTFDTAEAAALAYDQAAFALKGS 132

Query:   120 KAKLNFP 126
              A LNFP
Sbjct:   133 LAVLNFP 139

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 61/128 (47%), Positives = 71/128 (55%)

Query:    10 SEFAILESIRQYLLNDDFDNVPSETS--ISVNDDPLINSPTN---------SSFRTRGAT 58
             ++F  +E+    L  +   N  SET      N  P  NS  N         S  RT    
Sbjct:    19 TDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTLNQRKPPLPNLSVSRTVSTK 78

Query:    59 THESHVRVFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRG 118
             T +      YRGVRRRPWGK+AAEIRDPNKK G R+WLGTYDT   A  AYD+AAF +RG
Sbjct:    79 TEKEEEERHYRGVRRRPWGKYAAEIRDPNKK-GCRIWLGTYDTAVEAGRAYDQAAFQLRG 137

Query:   119 SKAKLNFP 126
              KA LNFP
Sbjct:   138 RKAILNFP 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 45/69 (65%), Positives = 53/69 (76%)

Query:    68 YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
             YRGVR+RPWGK+AAEIRDP++   ARVWLGT+DT E AA AYD AA   RG+KAKLNFP 
Sbjct:    77 YRGVRQRPWGKWAAEIRDPHR--AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPE 134

Query:   128 LIGSNVAPP 136
              +   + PP
Sbjct:   135 DV--RILPP 141

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 58/108 (53%), Positives = 71/108 (65%)

Query:    32 SETSISVNDD--PLINSPTNSSFRTRGATTHESHV---RVFYRGVRRRPWGKFAAEIRDP 86
             S  +IS  DD  P + +P + + +   A TH+      R  YRGVR+RPWGK+AAEIRDP
Sbjct:    51 SHDNISSIDDNYPSVYNPQDPNQQV--APTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDP 108

Query:    87 NKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLI--GSN 132
              K   ARVWLGT++T E AALAYD AA   +GSKAKLNFP  +  GSN
Sbjct:   109 KK--AARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSN 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 51/96 (53%), Positives = 68/96 (70%)

Query:    68 YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
             +RGVRRRPWGKFAAEIRDP++ NGAR+WLGT++T E AA AYDRAAFN+RG  A LNFP+
Sbjct:    20 FRGVRRRPWGKFAAEIRDPSR-NGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPN 78

Query:   128 -----LIGSNVAPPLRVTKKRGSSSSSNYTLHLQSE 158
                  +   ++ PP   +    SS S++  +  Q++
Sbjct:    79 EYYPRMDDYSLRPPYASSSSSSSSGSTSTNVSRQNQ 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2176511 AT5G43410 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/84 (63%), Positives = 64/84 (76%)

Query:    68 YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
             YRGVRRRPWGK+AAEIRD ++K+G RVWLGT+DT E AA AYD+AA++MRG  A LNFPH
Sbjct:    15 YRGVRRRPWGKYAAEIRD-SRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPH 73

Query:   128 L--IGSNVAPPLRVTKKRGSSSSS 149
                +GS V+     T   GSSS+S
Sbjct:    74 EYNMGSGVSSS---TAMAGSSSAS 94

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9K1	ERF99_ARATH	No assigned EC number	0.5114	0.8603	0.6814	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-31
pfam00847	53	pfam00847, AP2, AP2 domain	1e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  112 bits (282), Expect = 4e-33
 Identities = 42/61 (68%), Positives = 48/61 (78%), Gaps = 2/61 (3%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGK+ AEIRDP+K    RVWLGT+DT E AA AYDRAAF  RG  A+LNFP+
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKG--KRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 128 L 128
            
Sbjct: 60  S 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  106 bits (267), Expect = 5e-31
 Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGK+ AEIRDP    G R+WLGT+DT E AA AYDRAA  +RGS A LNFP 
Sbjct: 3   YRGVRQRPWGKWVAEIRDP--SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 128 L 128
            
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 64.2 bits (157), Expect = 1e-14
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 68  YRGVRRRP-WGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRG 118
           Y+GVR    WG++ AEIRDP +K   R  LGT+ T E AA A   A   +RG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.81
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.23
PF13392	46	HNH_3: HNH endonuclease; PDB: 1U3E_M.	87.93

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.8e-21  Score=132.87  Aligned_cols=61  Identities=67%  Similarity=1.179  Sum_probs=56.4

Q ss_pred             CceeeeEECCCCcEEEEEecCCCCCCcEEecccCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 039729           66 VFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHL  128 (179)
Q Consensus        66 s~yrGV~~r~~gkW~A~I~~~~~~~gkri~LG~F~T~EeAA~AYD~Aa~~~~G~~A~lNFp~~  128 (179)
                      |+|+||+++++|||+|+|+++  ..|+++|||+|+|+|||+.|||.|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~--~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDP--SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeC--CCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            589999988899999999874  2489999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=5.1e-21  Score=132.12  Aligned_cols=63  Identities=67%  Similarity=1.183  Sum_probs=58.4

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCCCcEEecccCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 039729           67 FYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLIGS  131 (179)
Q Consensus        67 ~yrGV~~r~~gkW~A~I~~~~~~~gkri~LG~F~T~EeAA~AYD~Aa~~~~G~~A~lNFp~~~~~  131 (179)
                      +|+||+++++|||+|+|+++  .+|+.+|||+|+|+||||.|||.|+++++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~--~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDP--SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEec--CCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            58999998899999999886  4789999999999999999999999999999999999987654

>PHA00280 putative NHN endonuclease

Probab=99.81  E-value=5.8e-20  Score=142.52  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             ccCCCCCCCC-cccccCCCCCCCCCCCCccccccCcccC--------CCCCCceeeeEEC-CCCcEEEEEecCCCCCCcE
Q 039729           24 NDDFDNVPSE-TSISVNDDPLINSPTNSSFRTRGATTHE--------SHVRVFYRGVRRR-PWGKFAAEIRDPNKKNGAR   93 (179)
Q Consensus        24 ~~~~~~~p~~-~~~hin~~p~~n~~~n~~~~lR~~t~~~--------~~~~s~yrGV~~r-~~gkW~A~I~~~~~~~gkr   93 (179)
                      ...-..+|.. .+||||+++.||+++|    ||.+|..+        ..++|+|+||++. ..|||+|+|    +++||+
T Consensus        20 ~~~~G~~P~g~~VdHidg~~~dnri~N----Lr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I----~~~gK~   91 (121)
T PHA00280         20 EAANGPIPKGYYIDHIDGNPLNDALDN----LRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTV----TAEGKQ   91 (121)
T ss_pred             HHHHCCCCCCCEEEcCCCCCCCCcHHH----hhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEE----EECCEE
Confidence            3344567874 6999999999999999    88877432        3445799999854 569999999    569999


Q ss_pred             EecccCCCHHHHHHHHHHHHHhhcCCCCC
Q 039729           94 VWLGTYDTPEGAALAYDRAAFNMRGSKAK  122 (179)
Q Consensus        94 i~LG~F~T~EeAA~AYD~Aa~~~~G~~A~  122 (179)
                      ++||.|+++|+|+.||+ ++.++||+||.
T Consensus        92 ~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         92 HNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             EEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            99999999999999997 77889999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.23  E-value=2.5e-11  Score=80.74  Aligned_cols=53  Identities=30%  Similarity=0.377  Sum_probs=45.4

Q ss_pred             CceeeeEECC-CCcEEEEEecCCCCCC--cEEecccCCCHHHHHHHHHHHHHhhcCC
Q 039729           66 VFYRGVRRRP-WGKFAAEIRDPNKKNG--ARVWLGTYDTPEGAALAYDRAAFNMRGS  119 (179)
Q Consensus        66 s~yrGV~~r~-~gkW~A~I~~~~~~~g--kri~LG~F~T~EeAA~AYD~Aa~~~~G~  119 (179)
                      |+|+||++.+ .++|+|+|+++ ..+|  ++++||.|++++||++|++.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~-~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVW-SENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEEC-CCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEc-ccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            5899998554 79999999885 2344  9999999999999999999999999885

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF13392 HNH_3: HNH endonuclease; PDB: 1U3E_M

Probab=87.93  E-value=0.056  Score=34.59  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=17.1

Q ss_pred             CCCCC-cccccCCCCCCCCCCCCccccccCcccC
Q 039729           29 NVPSE-TSISVNDDPLINSPTNSSFRTRGATTHE   61 (179)
Q Consensus        29 ~~p~~-~~~hin~~p~~n~~~n~~~~lR~~t~~~   61 (179)
                      .+|.. +++|+++++.+|+++|    |+..++.+
T Consensus        14 ~~p~~~~v~H~~~~~~~n~~~N----L~~~t~~e   43 (46)
T PF13392_consen   14 PIPEGYVVDHKDGNKTDNRPEN----LRWVTRSE   43 (46)
T ss_dssp             T--TT-EEEETTS-TT---GGG----EEEE-HHH
T ss_pred             CCCCCCEEEeCCCCCCCCCHHH----ceECCHHH
Confidence            44443 7999999999999999    77776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		8e-23
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-22

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP  KNGARVWLGT++T E AALAYDRAAF MRGS+A LNFP 
Sbjct: 6   YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64
Query: 128 LIGSN 132
            + S 
Sbjct: 65  RVNSG 69

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 53/59 (89%), Gaps = 1/59 (1%)
Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFP 126
           YRGVR+RPWGKFAAEIRDP  KNGARVWLGT++T E AALAYDRAAF MRGS+A LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-41

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  132 bits (335), Expect = 2e-41
 Identities = 49/62 (79%), Positives = 54/62 (87%), Gaps = 1/62 (1%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP K NGARVWLGT++T E AALAYDRAAF MRGS+A LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAK-NGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 128 LI 129
            +
Sbjct: 62  RV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	98.16
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	85.04
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	81.15

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=5.9e-27  Score=161.63  Aligned_cols=63  Identities=78%  Similarity=1.308  Sum_probs=58.9

Q ss_pred             CceeeeEECCCCcEEEEEecCCCCCCcEEecccCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 039729           66 VFYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLI  129 (179)
Q Consensus        66 s~yrGV~~r~~gkW~A~I~~~~~~~gkri~LG~F~T~EeAA~AYD~Aa~~~~G~~A~lNFp~~~  129 (179)
                      ++|+||++++||||+|+|++| ..+|+++|||+|+|+||||+|||.|+++++|.++.+|||.+|
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~-~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEET-TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccc-cCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            379999988999999999998 457899999999999999999999999999999999999875

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=98.16  E-value=1.1e-08  Score=81.24  Aligned_cols=69  Identities=12%  Similarity=-0.085  Sum_probs=51.6

Q ss_pred             CcccccCCCCCCCCCCCCccccccCcccCCCCCC-------ceeeeEECCCCcEEEEEecCCCCCCcEEecccCCCHHHH
Q 039729           33 ETSISVNDDPLINSPTNSSFRTRGATTHESHVRV-------FYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGA  105 (179)
Q Consensus        33 ~~~~hin~~p~~n~~~n~~~~lR~~t~~~~~~~s-------~yrGV~~r~~gkW~A~I~~~~~~~gkri~LG~F~T~EeA  105 (179)
                      .+++|+|+++.||+++|    ||.+|..++..+.       .++||.....++|.+.|.    ++ +.++||.|+|.+||
T Consensus        71 ~~v~H~dg~k~nn~~~N----L~~~t~~eN~~~~~~~~~~~~~~g~~~~~~~k~~~vi~----~~-~~~~~~~f~s~~eA  141 (174)
T 1u3e_M           71 LVVDHKDGNKDNNLSTN----LRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIV----IS-PDGIEKEYPSTKCA  141 (174)
T ss_dssp             CEEEETTSCTTCCCGGG----EEEECHHHHHHHHHHHTCCCCHHHHHHHHHHTCCCEEE----EC-TTSCEEEESCHHHH
T ss_pred             CEEEcCCCCCCCCCHHH----cEECCHHHHhhcccccCcccceeeeeeccCCCCceEEE----Ec-CCceEEeeCCHHHH
Confidence            57999999999999999    9999865543321       245664322356888884    34 56789999999999


Q ss_pred             HHHHH
Q 039729          106 ALAYD  110 (179)
Q Consensus       106 A~AYD  110 (179)
                      |++|.
T Consensus       142 a~~~G  146 (174)
T 1u3e_M          142 CEELG  146 (174)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=85.04  E-value=0.49  Score=33.30  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=18.8

Q ss_pred             CCCCceeeeEECC-CCcEEEEEecC
Q 039729           63 HVRVFYRGVRRRP-WGKFAAEIRDP   86 (179)
Q Consensus        63 ~~~s~yrGV~~r~-~gkW~A~I~~~   86 (179)
                      ...|+|.||++.+ -+.|.|...+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            3568999998665 59999999764

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=81.15  E-value=2  Score=35.02  Aligned_cols=42  Identities=17%  Similarity=0.122  Sum_probs=31.7

Q ss_pred             eeeEECCCCcEEEEEecCCCCCCcEEecccCCCHHHHHHHHHHHHHhh
Q 039729           69 RGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNM  116 (179)
Q Consensus        69 rGV~~r~~gkW~A~I~~~~~~~gkri~LG~F~T~EeAA~AYD~Aa~~~  116 (179)
                      .||++++.|.|+.+.    ..+|+++.+|.  |..||..+..++...+
T Consensus        14 ~~v~~~~~g~~~~r~----~~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRD----PRTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEEC----TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEe----ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            367777789999876    35789999996  8988887776655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-32

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (274), Expect = 1e-32
 Identities = 48/62 (77%), Positives = 53/62 (85%), Gaps = 1/62 (1%)

Query: 68  YRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPH 127
           YRGVR+RPWGKFAAEIRDP K  GARVWLGT++T E AALAYDRAAF MRGS+A LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKN-GARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 128 LI 129
            +
Sbjct: 62  RV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93
d1u3em1	105	Intron-encoded homing endonuclease I-HmuI {Bacteri	89.73

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=3e-27  Score=161.77  Aligned_cols=62  Identities=79%  Similarity=1.338  Sum_probs=58.4

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCCCcEEecccCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 039729           67 FYRGVRRRPWGKFAAEIRDPNKKNGARVWLGTYDTPEGAALAYDRAAFNMRGSKAKLNFPHLI  129 (179)
Q Consensus        67 ~yrGV~~r~~gkW~A~I~~~~~~~gkri~LG~F~T~EeAA~AYD~Aa~~~~G~~A~lNFp~~~  129 (179)
                      +||||+++++|||+|+|++| ..+++++|||+|+|+||||+|||+|+++++|.++.+|||..|
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~-~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDP-AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEET-TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecC-CCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            69999988899999999998 567899999999999999999999999999999999999764

>d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: Intron-encoded homing endonucleases
domain: Intron-encoded homing endonuclease I-HmuI
species: Bacteriophage SP01 [TaxId: 10685]

Probab=89.73  E-value=0.018  Score=40.34  Aligned_cols=27  Identities=19%  Similarity=-0.061  Sum_probs=23.0

Q ss_pred             CcccccCCCCCCCCCCCCccccccCcccCCC
Q 039729           33 ETSISVNDDPLINSPTNSSFRTRGATTHESH   63 (179)
Q Consensus        33 ~~~~hin~~p~~n~~~n~~~~lR~~t~~~~~   63 (179)
                      .+++|||+++.||+++|    ||.+|..++.
T Consensus        71 ~~VdHidgnk~nN~~~N----L~w~T~~eN~   97 (105)
T d1u3em1          71 LVVDHKDGNKDNNLSTN----LRWVTQKINV   97 (105)
T ss_dssp             CEEEETTSCTTCCCGGG----EEEECHHHHH
T ss_pred             CEEEeCCCCCCCCCHHH----cEEcCHHHHH
Confidence            46899999999999999    9998866543