BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039731
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 10 SQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSK 68
+ +KYDVFLSFRG DTR NF S L+ L R+ I+TF D+ EL G SP + IE S+
Sbjct: 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSR 64
Query: 69 ITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKH 128
V++ S+NYA+S WCLDELV I++ K S V+P+FY ++P+ VR Q+G + F KH
Sbjct: 65 FAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH 124
Query: 129 EEQFKDMPEKIQIWR 143
++ PEK+ WR
Sbjct: 125 AS--REDPEKVLKWR 137
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
Query: 13 KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTF-IDEELNRGDEISPAILKAIEGSKITV 71
+Y+VFLSFRG DTR+ FT L+ +L R KI TF D+EL +G EI P +L+AI+ SKI V
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 72 IIFSKNYASSKWCLDELVKILECHKMN-SQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
I S YA SKWCL EL +I+ + + ++++P+FY +DPSDVR Q+G +K AF KH
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 QFKDMPEKIQIWR 143
+F + IQ W+
Sbjct: 155 KFD--GQTIQNWK 165
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%)
Query: 8 LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGS 67
LTS +D+F+S ED D + H + D L GD + +I K + S
Sbjct: 15 LTSAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSS 74
Query: 68 KITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKD 123
+ +++ S ++ +W EL + + ++P+++++ +V S D
Sbjct: 75 RFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3MYR|B Chain B, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|D Chain D, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|F Chain F, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|H Chain H, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 561
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 84 CLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWR 143
L + I + N Q VVP + P D R Q+G + +A ++ Q D+ + I+I R
Sbjct: 489 ALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAY-EAALQDNHQLVDVKQPIEILR 547
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 8 LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKT 44
L ++ + V +S R +T D F + L LC +IKT
Sbjct: 358 LAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 8 LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKT 44
L ++ + V +S R +T D F + L LC +IKT
Sbjct: 358 LAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 8 LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKT 44
L ++ + V +S R +T D F + L LC +IKT
Sbjct: 358 LAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii
pdb|3TQP|B Chain B, Structure Of An Enolase (Eno) From Coxiella Burnetii
Length = 428
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 4 SSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKT 44
++ GL +KY V +S R +T D + L A ++IKT
Sbjct: 349 ATVGLAKSNKYGVIISHRSGETEDTTIADLAVATDARQIKT 389
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 104 PVFYRIDPSDVRKQSGRFKDAFVK-HEEQFKDMPEKIQIW 142
P++ + ++K GRFKD F + +++Q+K E +IW
Sbjct: 206 PLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIW 245
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 104 PVFYRIDPSDVRKQSGRFKDAFVK-HEEQFKDMPEKIQIW 142
P++ + ++K GRFKD F + +++Q+K E +IW
Sbjct: 206 PLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIW 245
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 104 PVFYRIDPSDVRKQSGRFKDAFVK-HEEQFKDMPEKIQIW 142
P++ + ++K GRFKD F + +++Q+K E +IW
Sbjct: 206 PLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIW 245
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 104 PVFYRIDPSDVRKQSGRFKDAFVK-HEEQFKDMPEKIQIW 142
P++ + ++K GRFKD F + +++Q+K E +IW
Sbjct: 211 PLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIW 250
>pdb|2ICS|A Chain A, Crystal Structure Of An Adenine Deaminase
Length = 379
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 174 KPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSESIDRSGELEVESICREQINAPQ 233
+P T+ + C + L+YD+ D +G ++ +G E+I E + Q
Sbjct: 47 EPGTYVSAGWIDDHVHCFEKXALYYDYPDEIGVKKGVTTVIDAGTTGAENI-HEFYDLAQ 105
Query: 234 QQRSSLFSHIIAKGGGLYAFLAPSDHASIQ 263
Q ++++F + G+ A +D + +Q
Sbjct: 106 QAKTNVFGLVNISKWGIVAQDELADLSKVQ 135
>pdb|2I83|A Chain A, Hyaluronan-Binding Domain Of Cd44 In Its Ligand-Bound Form
Length = 160
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 135 MPEKIQIWRAFSVQYRCFEKG--------PKVHSCGVCP-----VYA-HPNGTKPNTFTV 180
+P Q+ +A S+ + G P++H +C VY N ++ +T+
Sbjct: 42 LPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCF 101
Query: 181 NVLPPNEEECTQIRKLHYDF 200
N P EE+CT + L F
Sbjct: 102 NASAPPEEDCTSVTDLPNAF 121
>pdb|1POZ|A Chain A, Solution Structure Of The Hyaluronan Binding Domain Of
Human Cd44
Length = 159
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 135 MPEKIQIWRAFSVQYRCFEKG--------PKVHSCGVCP-----VYA-HPNGTKPNTFTV 180
+P Q+ +A S+ + G P++H +C VY N ++ +T+
Sbjct: 41 LPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCF 100
Query: 181 NVLPPNEEECTQIRKLHYDF 200
N P EE+CT + L F
Sbjct: 101 NASAPPEEDCTSVTDLPNAF 120
>pdb|3AIS|A Chain A, Crystal Structure Of A Mutant Beta-Glucosidase In Wheat
Complexed With Dimboa-Glc
Length = 565
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 132 FKDMPEKIQIWRAFSV--QYRCFEKGPKVHSCGVCPVY---AHPNGT---KPNTFTVNVL 183
FK+ ++++ W F+ Y CF G +H+ G C A P G +P T ++L
Sbjct: 221 FKNFGDRVKNWFTFNAPHTYCCFSYGEGIHAPGRCSPGMDCAVPEGDSLREPYTAGHHIL 280
Query: 184 PPNEEECTQIRKLHYDFH 201
+ E Q+ K Y+ H
Sbjct: 281 LAH-AEAVQLFKARYNMH 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,351,045
Number of Sequences: 62578
Number of extensions: 381720
Number of successful extensions: 993
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 25
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)