Query 039731
Match_columns 315
No_of_seqs 380 out of 2397
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 3.1E-50 1.1E-54 354.1 9.2 156 6-163 28-185 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 4.3E-49 1.5E-53 341.0 9.8 146 10-157 5-151 (176)
3 3h16_A TIR protein; bacteria T 100.0 7E-34 2.4E-38 241.5 5.1 135 9-149 16-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 2.1E-28 7.2E-33 206.1 -0.8 134 8-146 5-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.9E-24 6.6E-29 182.4 1.6 103 10-114 2-110 (149)
6 2js7_A Myeloid differentiation 99.9 6.4E-24 2.2E-28 181.3 3.1 100 10-111 13-117 (160)
7 1t3g_A X-linked interleukin-1 99.9 3.8E-23 1.3E-27 176.3 6.7 100 12-111 1-114 (159)
8 2j67_A TOLL like receptor 10; 99.9 1.2E-23 4.1E-28 182.5 3.2 104 8-113 30-139 (178)
9 3j0a_A TOLL-like receptor 5; m 99.7 4.6E-17 1.6E-21 170.5 5.8 100 10-111 667-774 (844)
10 2a5y_B CED-4; apoptosis; HET: 98.9 8E-10 2.7E-14 110.6 4.9 109 171-286 131-258 (549)
11 3sfz_A APAF-1, apoptotic pepti 98.4 5E-08 1.7E-12 104.5 2.3 114 169-289 125-254 (1249)
12 1vt4_I APAF-1 related killer D 98.2 3.8E-07 1.3E-11 97.1 3.4 109 171-289 131-262 (1221)
13 1z6t_A APAF-1, apoptotic prote 97.9 1.4E-06 4.7E-11 87.1 0.2 113 169-289 125-254 (591)
14 1eiw_A Hypothetical protein MT 97.7 4.2E-05 1.4E-09 60.7 5.1 72 12-106 3-74 (111)
15 3hyn_A Putative signal transdu 96.2 0.015 5E-07 49.7 7.9 105 13-122 5-133 (189)
16 1w5s_A Origin recognition comp 96.1 0.0081 2.8E-07 56.3 6.5 78 205-284 59-151 (412)
17 2v1u_A Cell division control p 94.7 0.05 1.7E-06 50.1 6.6 80 204-284 50-143 (387)
18 2qby_B CDC6 homolog 3, cell di 92.9 0.086 2.9E-06 48.8 4.5 50 235-284 95-146 (384)
19 2qby_A CDC6 homolog 1, cell di 91.1 0.079 2.7E-06 48.7 2.0 78 204-283 51-140 (386)
20 3te6_A Regulatory protein SIR3 87.5 0.76 2.6E-05 42.5 5.8 53 235-287 93-148 (318)
21 1fnn_A CDC6P, cell division co 86.3 1 3.5E-05 41.3 6.0 78 205-283 51-137 (389)
22 2qen_A Walker-type ATPase; unk 83.0 0.8 2.7E-05 41.2 3.6 30 256-285 112-142 (350)
23 2fna_A Conserved hypothetical 82.1 1.4 4.6E-05 39.7 4.8 27 257-284 124-150 (357)
24 2f62_A Nucleoside 2-deoxyribos 75.5 10 0.00035 31.3 7.8 68 28-95 27-98 (161)
25 2khz_A C-MYC-responsive protei 65.7 29 0.00099 28.4 8.5 79 12-94 10-102 (165)
26 1njg_A DNA polymerase III subu 65.1 1 3.4E-05 37.7 -0.8 16 269-284 124-139 (250)
27 2chg_A Replication factor C sm 59.3 10 0.00035 30.9 4.5 14 270-283 101-114 (226)
28 4fyk_A Deoxyribonucleoside 5'- 55.0 40 0.0014 27.5 7.3 76 15-94 4-93 (152)
29 3ehd_A Uncharacterized conserv 50.6 50 0.0017 27.1 7.3 67 27-94 19-96 (162)
30 3fwy_A Light-independent proto 49.4 5.9 0.0002 36.2 1.5 18 188-212 45-62 (314)
31 2yvq_A Carbamoyl-phosphate syn 47.9 34 0.0012 27.2 5.8 61 16-78 27-106 (143)
32 3pvs_A Replication-associated 44.9 28 0.00094 33.3 5.6 15 269-283 104-118 (447)
33 2w58_A DNAI, primosome compone 42.8 14 0.00047 30.4 2.7 11 204-214 60-70 (202)
34 1v95_A Nuclear receptor coacti 37.7 95 0.0033 24.5 6.8 61 11-74 6-67 (130)
35 2z4s_A Chromosomal replication 36.5 17 0.00058 34.6 2.6 21 264-284 187-207 (440)
36 3h4m_A Proteasome-activating n 34.3 21 0.00071 31.0 2.6 13 271-283 110-122 (285)
37 2qz4_A Paraplegin; AAA+, SPG7, 33.6 25 0.00084 29.9 2.9 14 270-283 97-110 (262)
38 1sxj_B Activator 1 37 kDa subu 33.1 24 0.00083 30.9 2.9 15 269-283 105-119 (323)
39 2jug_A TUBC protein; docking d 31.0 38 0.0013 24.0 3.1 38 30-67 7-48 (78)
40 3t15_A Ribulose bisphosphate c 30.5 22 0.00077 31.5 2.2 15 269-283 97-111 (293)
41 1sc3_B Interleukin-1 beta conv 30.3 14 0.00048 27.2 0.7 25 17-41 21-45 (88)
42 1byr_A Protein (endonuclease); 29.6 1.3E+02 0.0043 23.2 6.4 52 51-108 10-61 (155)
43 1hqc_A RUVB; extended AAA-ATPa 28.9 36 0.0012 29.9 3.3 12 204-215 44-55 (324)
44 1sxj_A Activator 1 95 kDa subu 28.8 21 0.00072 34.6 1.8 16 269-284 146-161 (516)
45 2ql9_B Caspase-7; cysteine pro 25.9 17 0.00058 27.1 0.4 24 18-41 24-47 (97)
46 3cf0_A Transitional endoplasmi 25.4 65 0.0022 28.4 4.3 14 269-282 106-119 (301)
47 1wu7_A Histidyl-tRNA synthetas 25.2 1.4E+02 0.0048 27.8 6.9 58 13-75 332-390 (434)
48 1qtn_B Caspase-8; apoptosis, d 25.0 16 0.00055 27.2 0.1 30 12-41 11-49 (95)
49 1s2d_A Purine trans deoxyribos 24.8 1.9E+02 0.0066 23.5 6.8 77 15-94 9-108 (167)
50 3vkg_A Dynein heavy chain, cyt 24.4 55 0.0019 39.3 4.4 60 203-280 1651-1713(3245)
51 4akg_A Glutathione S-transfera 24.2 63 0.0022 38.1 4.9 61 203-281 1614-1677(2695)
52 2dko_B Caspase-3; low barrier 23.8 20 0.00068 27.1 0.4 29 13-41 16-53 (103)
53 1pyo_B Caspase-2; apoptosis, c 23.4 20 0.0007 27.2 0.4 24 18-41 28-51 (105)
54 3b9p_A CG5977-PA, isoform A; A 20.8 65 0.0022 28.0 3.3 14 270-283 112-125 (297)
55 1xwi_A SKD1 protein; VPS4B, AA 20.6 81 0.0028 28.2 4.0 14 270-283 104-117 (322)
56 2xzd_B Caspase-3; hydrolase-pr 20.5 28 0.00095 27.1 0.7 25 17-41 28-52 (118)
57 3net_A Histidyl-tRNA synthetas 20.3 1.6E+02 0.0055 28.0 6.2 62 12-77 370-431 (465)
58 1evl_A Threonyl-tRNA synthetas 20.2 1.5E+02 0.0052 27.3 5.9 57 13-73 298-355 (401)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3.1e-50 Score=354.10 Aligned_cols=156 Identities=43% Similarity=0.692 Sum_probs=140.8
Q ss_pred CCCCCCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHh
Q 039731 6 FGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWC 84 (315)
Q Consensus 6 ~s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 84 (315)
|+++|.++|||||||||+|+|++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||
T Consensus 28 s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC 107 (204)
T 3ozi_A 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC 107 (204)
T ss_dssp ------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred cCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHH
Confidence 4446889999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-CCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHHhcccCCCCccCCCc
Q 039731 85 LDELVKILECHKM-NSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGV 163 (315)
Q Consensus 85 l~El~~i~~~~~~-~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~i~g~~~~~~~~~ 163 (315)
++||++|++|.++ ++++||||||+|+|++||+|+|.||++|++|++++. .+++++||.||++||+++|++.......
T Consensus 108 l~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e 185 (204)
T 3ozi_A 108 LMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQ 185 (204)
T ss_dssp HHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCH
T ss_pred HHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCH
Confidence 9999999999865 679999999999999999999999999999998874 7899999999999999999864433333
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-49 Score=340.98 Aligned_cols=146 Identities=44% Similarity=0.790 Sum_probs=125.7
Q ss_pred CCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHH
Q 039731 10 SQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDEL 88 (315)
Q Consensus 10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El 88 (315)
++++|||||||||+|+|.+|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 368999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHHhcccCCCC
Q 039731 89 VKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPK 157 (315)
Q Consensus 89 ~~i~~~~~~~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~i~g~~~ 157 (315)
++|++|.+.++++||||||+|+|++||+|+|.||++|++|+++ .+.+++++||.||++|||++|+..
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~ 151 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS 151 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec
Confidence 9999999889999999999999999999999999999999987 468999999999999999999853
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.98 E-value=7e-34 Score=241.45 Aligned_cols=135 Identities=19% Similarity=0.351 Sum_probs=120.6
Q ss_pred CCCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHH
Q 039731 9 TSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDE 87 (315)
Q Consensus 9 ~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~E 87 (315)
++.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.|.++|.++|++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4678999999999999 56899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 039731 88 LVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQY 149 (315)
Q Consensus 88 l~~i~~~~~~~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v 149 (315)
|..|+++...++++||||||+|+|++|++|+|.||++|..... ...+.++-+.|.++
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 9999998877888999999999999999999999999876543 33455666666554
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.93 E-value=2.1e-28 Score=206.09 Aligned_cols=134 Identities=15% Similarity=0.240 Sum_probs=94.2
Q ss_pred CCCCCceeEEEccccccCccchHHHHHHHHhh--CCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHh
Q 039731 8 LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCR--KKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWC 84 (315)
Q Consensus 8 ~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~--~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 84 (315)
....+.|||||||+++|+ .|+.+|+++|++ .|+++|+|+ |+.+|+.|.++|.++|++|+++|+|+|+||++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 334789999999999996 589999999998 599999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCeeeeEEEecCCccc----ccccCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 039731 85 LDELVKILECHKMNSQMVVPVFYRIDPSDV----RKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFS 146 (315)
Q Consensus 85 l~El~~i~~~~~~~~~~ViPIfy~v~ps~V----~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL 146 (315)
+.|+..|+.+......+||||||+|+++++ +....... ..+...+....+.|.+|++||
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 999999999863344478899999986665 44332211 112233333357889998875
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.88 E-value=1.9e-24 Score=182.38 Aligned_cols=103 Identities=22% Similarity=0.357 Sum_probs=91.8
Q ss_pred CCCceeEEEccccccCccchHHH-HHHHHhhC--CCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhH
Q 039731 10 SQSKYDVFLSFRGEDTRDNFTSH-LHAALCRK--KIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCL 85 (315)
Q Consensus 10 ~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~~--gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl 85 (315)
.++.|||||||+++|+ .|+.+ |+++|++. |+++|+|+ |+.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3678999999999995 79996 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhhCCCeeeeEEEe-cCCccc
Q 039731 86 DELVKILEC-HKMNSQMVVPVFYR-IDPSDV 114 (315)
Q Consensus 86 ~El~~i~~~-~~~~~~~ViPIfy~-v~ps~V 114 (315)
.|+..|+.+ .++++.+||||||+ +++..+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 999999853 45567899999984 555444
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.88 E-value=6.4e-24 Score=181.30 Aligned_cols=100 Identities=18% Similarity=0.317 Sum_probs=90.2
Q ss_pred CCCceeEEEccccccCccchHHHHHHHHhhC--CCeEEeeC-ccCCCCcchHHHHHHHh-hcCeEEEEeeccccCChHhH
Q 039731 10 SQSKYDVFLSFRGEDTRDNFTSHLHAALCRK--KIKTFIDE-ELNRGDEISPAILKAIE-GSKITVIIFSKNYASSKWCL 85 (315)
Q Consensus 10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~--gi~~f~D~-~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wcl 85 (315)
.++.|||||||+++| ..||.+|+++|+++ |+++|+|+ ++.+|+.+.++|.++|+ .|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 467899999999999 57999999999984 69999998 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHh-hhCCCeeeeEEEecCC
Q 039731 86 DELVKILECH-KMNSQMVVPVFYRIDP 111 (315)
Q Consensus 86 ~El~~i~~~~-~~~~~~ViPIfy~v~p 111 (315)
.|+..|+++. ++++++||||||+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999875 4456799999997543
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=176.33 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=89.2
Q ss_pred CceeEEEccccccC---------ccchHHHHHH-HHh-hCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeecccc
Q 039731 12 SKYDVFLSFRGEDT---------RDNFTSHLHA-ALC-RKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYA 79 (315)
Q Consensus 12 ~~ydVFIS~~~~D~---------r~~fv~~L~~-~L~-~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~ 79 (315)
+.|||||||+++|+ +..||.+|++ .|+ +.|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 46999999999996 3579999776 699 7999999998 9999999999999999999999999999997
Q ss_pred -CChHhHHHHHHHHHHh-hhCCCeeeeEEEecCC
Q 039731 80 -SSKWCLDELVKILECH-KMNSQMVVPVFYRIDP 111 (315)
Q Consensus 80 -~S~wcl~El~~i~~~~-~~~~~~ViPIfy~v~p 111 (315)
.|.||+.|+..|+.+. .+++..||||+|.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999876 6677899999976444
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.87 E-value=1.2e-23 Score=182.55 Aligned_cols=104 Identities=22% Similarity=0.368 Sum_probs=87.9
Q ss_pred CCCCCceeEEEccccccCccchHHH-HHHHHhh--CCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChH
Q 039731 8 LTSQSKYDVFLSFRGEDTRDNFTSH-LHAALCR--KKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKW 83 (315)
Q Consensus 8 ~~~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~--~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w 83 (315)
...++.|||||||+++|+ .||.. |+++|++ .|+++|+|+ |+.+|+.|.++|.++|++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 346789999999999995 79975 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh-hhCCCeeeeEEEe-cCCcc
Q 039731 84 CLDELVKILECH-KMNSQMVVPVFYR-IDPSD 113 (315)
Q Consensus 84 cl~El~~i~~~~-~~~~~~ViPIfy~-v~ps~ 113 (315)
|+.|+..|+.+. ++++++||||||+ +.+.+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~ 139 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYC 139 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGGG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChHH
Confidence 999999998653 5567799999985 44433
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=4.6e-17 Score=170.52 Aligned_cols=100 Identities=20% Similarity=0.324 Sum_probs=89.8
Q ss_pred CCCceeEEEccccccCccchH-HHHHHHHhh-----CCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCCh
Q 039731 10 SQSKYDVFLSFRGEDTRDNFT-SHLHAALCR-----KKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSK 82 (315)
Q Consensus 10 ~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~-----~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~ 82 (315)
..+.|||||||+++|. .|| ..|.+.|++ .|+++|+|+ |+.||+.+.++|.++|++||.+|+|+|++|+.|+
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 4679999999999995 577 679999985 589999999 9999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHh-hhCCCeeeeEEEecCC
Q 039731 83 WCLDELVKILECH-KMNSQMVVPVFYRIDP 111 (315)
Q Consensus 83 wcl~El~~i~~~~-~~~~~~ViPIfy~v~p 111 (315)
||..|+..|+.+. ++++.+||||||+-.|
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999998765 5677899999986433
No 10
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.89 E-value=8e-10 Score=110.60 Aligned_cols=109 Identities=13% Similarity=-0.010 Sum_probs=75.3
Q ss_pred CCCCCCceeeeeCCCCC-cccceeeeeeeccccccccCCCcc-----chhc----ccccccccee-eccccCCccCHHHH
Q 039731 171 NGTKPNTFTVNVLPPNE-EECTQIRKLHYDFHDNVGTSGNSE-----SIDR----SGELEVESIC-REQINAPQQQRSSL 239 (315)
Q Consensus 171 Vg~~~r~~~v~~Ll~~~-~~~~~l~~i~~d~~~~~GmGGiGK-----~vy~----~i~~~Fe~~~-~~~s~~~~~gl~~L 239 (315)
+|++.....+..++... .....+++|+ ||||||| .+|+ ++..+|++.+ +.+++....++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~-------G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLH-------GRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEE-------CSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEE-------cCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHH
Confidence 46655444443333221 3346777776 9999999 4675 6788899877 55544321268899
Q ss_pred HHHHHHHhcCC-C-CCcC-----ChhHHHHHHHHhhCCc-EEEEEeeCCCCCCCc
Q 039731 240 FSHIIAKGGGL-Y-AFLA-----PSDHASIQIQRRHIRL-KVSLLASKVDSASSP 286 (315)
Q Consensus 240 q~~LL~~il~~-~-~~~~-----~~~~~~~~i~~rL~~k-KvLIVLDDVd~~~ql 286 (315)
++.|+..+... . .... +.......++++|++| |+||||||||+.+|+
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~ 258 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI 258 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh
Confidence 99999998752 1 1222 2344578999999996 999999999999876
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.43 E-value=5e-08 Score=104.54 Aligned_cols=114 Identities=9% Similarity=-0.116 Sum_probs=72.3
Q ss_pred ccCCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCccc-----hhcc---cccccccee--eccccCCccCHHH
Q 039731 169 HPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSES-----IDRS---GELEVESIC--REQINAPQQQRSS 238 (315)
Q Consensus 169 ~~Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK~-----vy~~---i~~~Fe~~~--~~~s~~~~~gl~~ 238 (315)
..+|++..+..+..++.......++++|+ ||||+||+ +|++ ...+|...+ +..++....++..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~-------G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIY-------GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEE-------CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEE-------eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 45677665555555443334567778787 99999994 3444 344466555 3333322123444
Q ss_pred HHHHHHHHhcCCC----CCcCChhHHHHHHHHhhCCc--EEEEEeeCCCCCCCcccc
Q 039731 239 LFSHIIAKGGGLY----AFLAPSDHASIQIQRRHIRL--KVSLLASKVDSASSPELS 289 (315)
Q Consensus 239 Lq~~LL~~il~~~----~~~~~~~~~~~~i~~rL~~k--KvLIVLDDVd~~~qle~~ 289 (315)
..+.++..+.... ....+.++....++..|.+| |+||||||||+.+|++.+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~ 254 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF 254 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh
Confidence 4555666665421 12345666777888888877 999999999999998875
No 12
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.24 E-value=3.8e-07 Score=97.10 Aligned_cols=109 Identities=6% Similarity=-0.074 Sum_probs=65.2
Q ss_pred CCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCccc-----hhc--ccccccccee--eccccCCccCHHHHHH
Q 039731 171 NGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSES-----IDR--SGELEVESIC--REQINAPQQQRSSLFS 241 (315)
Q Consensus 171 Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK~-----vy~--~i~~~Fe~~~--~~~s~~~~~gl~~Lq~ 241 (315)
+|++.....+...+.. .+...+++|+ ||||+||+ +|+ ++..+|+..+ ..+++.. ....++.
T Consensus 131 VGRe~eLeeL~elL~~-~d~~RVV~Iv-------GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~--d~~~IL~ 200 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE-LRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLE 200 (1221)
T ss_dssp CCCHHHHHHHHHHHHH-CCSSCEEEEC-------CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS--SHHHHHH
T ss_pred CCcHHHHHHHHHHHhc-cCCCeEEEEE-------cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC--CHHHHHH
Confidence 5655444333332221 1235667776 99999994 454 4677899755 4444443 5555655
Q ss_pred HHHHH---hcC---CCCC-----cCChhHHHHHHHHhh---CCcEEEEEeeCCCCCCCcccc
Q 039731 242 HIIAK---GGG---LYAF-----LAPSDHASIQIQRRH---IRLKVSLLASKVDSASSPELS 289 (315)
Q Consensus 242 ~LL~~---il~---~~~~-----~~~~~~~~~~i~~rL---~~kKvLIVLDDVd~~~qle~~ 289 (315)
.|+.. +.. .... ..+.++....+++.| .+||+||||||||+.+|++.+
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f 262 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH
T ss_pred HHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh
Confidence 55543 221 0110 112344566677765 679999999999999998764
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.92 E-value=1.4e-06 Score=87.10 Aligned_cols=113 Identities=11% Similarity=-0.029 Sum_probs=65.0
Q ss_pred ccCCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCccch-----hccc---cccccc-ee-eccccCCccC-HH
Q 039731 169 HPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSESI-----DRSG---ELEVES-IC-REQINAPQQQ-RS 237 (315)
Q Consensus 169 ~~Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK~v-----y~~i---~~~Fe~-~~-~~~s~~~~~g-l~ 237 (315)
..||++..+..+...+........++.|+ ||||+||++ |+.. ..+|.. .+ .......... +.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~-------G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~ 197 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIH-------GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLM 197 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEE-------CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEE-------cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHH
Confidence 35666655444444433333446677777 999999943 4432 566853 33 3332221011 22
Q ss_pred HHHHHHHHHhcC-C---CCCcCChhHHHHHHHHhhCC--cEEEEEeeCCCCCCCcccc
Q 039731 238 SLFSHIIAKGGG-L---YAFLAPSDHASIQIQRRHIR--LKVSLLASKVDSASSPELS 289 (315)
Q Consensus 238 ~Lq~~LL~~il~-~---~~~~~~~~~~~~~i~~rL~~--kKvLIVLDDVd~~~qle~~ 289 (315)
.++ .++..+.. . .....+.......+++.|.+ +++||||||||+.++|+.+
T Consensus 198 ~l~-~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l 254 (591)
T 1z6t_A 198 KLQ-NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF 254 (591)
T ss_dssp HHH-HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT
T ss_pred HHH-HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh
Confidence 222 23333321 1 22344566677788888876 7899999999999888765
No 14
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.69 E-value=4.2e-05 Score=60.68 Aligned_cols=72 Identities=7% Similarity=0.011 Sum_probs=51.8
Q ss_pred CceeEEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHHHHH
Q 039731 12 SKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKI 91 (315)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i 91 (315)
.+|.+||||+.+|. ...|...|.+.|+.. .| +.|+.|.++|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 36999999999883 233333333445432 22 578999999999999999999999999877
Q ss_pred HHHhhhCCCeeeeEE
Q 039731 92 LECHKMNSQMVVPVF 106 (315)
Q Consensus 92 ~~~~~~~~~~ViPIf 106 (315)
. +.+.+|+-|.
T Consensus 64 ~----~~gkpIigV~ 74 (111)
T 1eiw_A 64 R----KSSKPIITVR 74 (111)
T ss_dssp T----TTTCCEEEEC
T ss_pred H----HcCCCEEEEE
Confidence 4 3455666554
No 15
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.20 E-value=0.015 Score=49.74 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=71.0
Q ss_pred ceeEEEcc--------------ccccCccchHHHHHHHHhhCCCeEEeeC-ccC-------C-CCcchHHHHHHHhhcCe
Q 039731 13 KYDVFLSF--------------RGEDTRDNFTSHLHAALCRKKIKTFIDE-ELN-------R-GDEISPAILKAIEGSKI 69 (315)
Q Consensus 13 ~ydVFIS~--------------~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~-------~-G~~i~~~i~~aI~~S~~ 69 (315)
+--+||+| ..+| ..+...|..--....+-.|.|. +.. . -..|.+.|.+.|..|..
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578888 3455 3456666555555566556675 442 2 34577899999999999
Q ss_pred EEEEeeccccCChHhHHHHHHHHHHhhhCCCeeeeEEEec-CCcccccccCchh
Q 039731 70 TVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRI-DPSDVRKQSGRFK 122 (315)
Q Consensus 70 ~Ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~ViPIfy~v-~ps~V~~q~g~f~ 122 (315)
+|+++|++...|.|-..|+..++. +.+.+||-|.-+- ..+++....|.|.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 999999999999999999988862 3455777676332 2335554445443
No 16
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.10 E-value=0.0081 Score=56.34 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=45.3
Q ss_pred ccCCCccch-----hcccccc-----cccee--eccccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhhC--
Q 039731 205 GTSGNSESI-----DRSGELE-----VESIC--REQINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRHI-- 269 (315)
Q Consensus 205 GmGGiGK~v-----y~~i~~~-----Fe~~~--~~~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL~-- 269 (315)
|++|+||+. ++.+... |...+ ....... ....+.++|+..+... ...-.+..+....+.+.|.
T Consensus 59 G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 136 (412)
T 1w5s_A 59 GRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP--NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE 136 (412)
T ss_dssp TCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC--SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC--CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999943 2333221 12222 2211222 6677888888877432 1112234455566666665
Q ss_pred CcEEEEEeeCCCCCC
Q 039731 270 RLKVSLLASKVDSAS 284 (315)
Q Consensus 270 ~kKvLIVLDDVd~~~ 284 (315)
+++++|||||++...
T Consensus 137 ~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 137 NHYLLVILDEFQSML 151 (412)
T ss_dssp TCEEEEEEESTHHHH
T ss_pred CCeEEEEEeCHHHHh
Confidence 679999999998854
No 17
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.71 E-value=0.05 Score=50.15 Aligned_cols=80 Identities=10% Similarity=-0.056 Sum_probs=44.7
Q ss_pred cccCCCccchhc-cccccc---------cceeec-cccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhh--C
Q 039731 204 VGTSGNSESIDR-SGELEV---------ESICRE-QINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRH--I 269 (315)
Q Consensus 204 ~GmGGiGK~vy~-~i~~~F---------e~~~~~-~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL--~ 269 (315)
+|..|+||++.. .+.... ...+.. ++... .....+...++..+... ...-.+..+....+.+.+ .
T Consensus 50 ~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 128 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR-ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRL 128 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS-CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 399999995433 222222 222211 11111 25566777788777431 122223444456666666 3
Q ss_pred CcEEEEEeeCCCCCC
Q 039731 270 RLKVSLLASKVDSAS 284 (315)
Q Consensus 270 ~kKvLIVLDDVd~~~ 284 (315)
+++++|||||++...
T Consensus 129 ~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 129 RGIYIIVLDEIDFLP 143 (387)
T ss_dssp CSEEEEEEETTTHHH
T ss_pred CCeEEEEEccHhhhc
Confidence 468999999999764
No 18
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.88 E-value=0.086 Score=48.79 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHhcCCC--CCcCChhHHHHHHHHhhCCcEEEEEeeCCCCCC
Q 039731 235 QRSSLFSHIIAKGGGLY--AFLAPSDHASIQIQRRHIRLKVSLLASKVDSAS 284 (315)
Q Consensus 235 gl~~Lq~~LL~~il~~~--~~~~~~~~~~~~i~~rL~~kKvLIVLDDVd~~~ 284 (315)
....+..+++..+.+.. ..-.+..+....+.+.+..++.+|||||++...
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~ 146 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLV 146 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhc
Confidence 44566777787775521 112223455667778888776699999998753
No 19
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.09 E-value=0.079 Score=48.68 Aligned_cols=78 Identities=5% Similarity=-0.066 Sum_probs=39.1
Q ss_pred cccCCCccchhc-cccccc------ccee--eccccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhhC--Cc
Q 039731 204 VGTSGNSESIDR-SGELEV------ESIC--REQINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRHI--RL 271 (315)
Q Consensus 204 ~GmGGiGK~vy~-~i~~~F------e~~~--~~~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL~--~k 271 (315)
+|..|+||++.- .+.... ...+ ....... ....+...++..+... ...-.+..+....+.+.+. ++
T Consensus 51 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 128 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID--TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGS 128 (386)
T ss_dssp EECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC--SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCS
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC--CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCC
Confidence 399999995432 232222 2222 1111111 3445555665544221 1111224444455555554 35
Q ss_pred EEEEEeeCCCCC
Q 039731 272 KVSLLASKVDSA 283 (315)
Q Consensus 272 KvLIVLDDVd~~ 283 (315)
+++|||||++..
T Consensus 129 ~~vlilDE~~~l 140 (386)
T 2qby_A 129 QVVIVLDEIDAF 140 (386)
T ss_dssp CEEEEEETHHHH
T ss_pred eEEEEEcChhhh
Confidence 899999999874
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.52 E-value=0.76 Score=42.48 Aligned_cols=53 Identities=13% Similarity=-0.082 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcCChhHHHHHHHHhh---CCcEEEEEeeCCCCCCCcc
Q 039731 235 QRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRH---IRLKVSLLASKVDSASSPE 287 (315)
Q Consensus 235 gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~~rL---~~kKvLIVLDDVd~~~qle 287 (315)
....+...|+.++.+.........+....+.+.+ .+++++|+||.+|...+-+
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~ 148 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEK 148 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcch
Confidence 4456777888888764322222222222223333 4578999999999876433
No 21
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.34 E-value=1 Score=41.32 Aligned_cols=78 Identities=8% Similarity=-0.127 Sum_probs=41.3
Q ss_pred ccCCCccchhc-ccccccc----ceeec-cccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhhC--CcEEEE
Q 039731 205 GTSGNSESIDR-SGELEVE----SICRE-QINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRHI--RLKVSL 275 (315)
Q Consensus 205 GmGGiGK~vy~-~i~~~Fe----~~~~~-~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL~--~kKvLI 275 (315)
|..|+||++.- .+..... ..+.. ++... .....+...++..+... ...-.+..+....+.+.+. +++.+|
T Consensus 51 G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 129 (389)
T 1fnn_A 51 GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY-RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFL 129 (389)
T ss_dssp CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC-CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC-CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 99999995433 3333321 11211 11111 24556677777665321 1111234444455555543 568899
Q ss_pred EeeCCCCC
Q 039731 276 LASKVDSA 283 (315)
Q Consensus 276 VLDDVd~~ 283 (315)
||||++..
T Consensus 130 ilDE~~~l 137 (389)
T 1fnn_A 130 VLDDAFNL 137 (389)
T ss_dssp EEETGGGS
T ss_pred EEECcccc
Confidence 99999886
No 22
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.02 E-value=0.8 Score=41.24 Aligned_cols=30 Identities=0% Similarity=-0.193 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHhhCC-cEEEEEeeCCCCCCC
Q 039731 256 PSDHASIQIQRRHIR-LKVSLLASKVDSASS 285 (315)
Q Consensus 256 ~~~~~~~~i~~rL~~-kKvLIVLDDVd~~~q 285 (315)
+..+....+.+.+.. ++++|||||++...+
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~ 142 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRF 142 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGG
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhc
Confidence 444455556555543 389999999998654
No 23
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.13 E-value=1.4 Score=39.70 Aligned_cols=27 Identities=4% Similarity=-0.045 Sum_probs=17.2
Q ss_pred hhHHHHHHHHhhCCcEEEEEeeCCCCCC
Q 039731 257 SDHASIQIQRRHIRLKVSLLASKVDSAS 284 (315)
Q Consensus 257 ~~~~~~~i~~rL~~kKvLIVLDDVd~~~ 284 (315)
.......+.+.-. ++++|||||++..+
T Consensus 124 ~~~l~~~l~~~~~-~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 124 FANLLESFEQASK-DNVIIVLDEAQELV 150 (357)
T ss_dssp HHHHHHHHHHTCS-SCEEEEEETGGGGG
T ss_pred HHHHHHHHHhcCC-CCeEEEEECHHHhh
Confidence 3344444544322 48999999998854
No 24
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=75.49 E-value=10 Score=31.26 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=48.9
Q ss_pred chHHHHHHHHhhCCCeEEeeC--ccCCCCcchHHHHHHHhhcCeEEEEeec--cccCChHhHHHHHHHHHHh
Q 039731 28 NFTSHLHAALCRKKIKTFIDE--ELNRGDEISPAILKAIEGSKITVIIFSK--NYASSKWCLDELVKILECH 95 (315)
Q Consensus 28 ~fv~~L~~~L~~~gi~~f~D~--~~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~wcl~El~~i~~~~ 95 (315)
.+...+.+.|++.|+.+|.-. .......|..+-.++|++|+++|.+++| .--.++-...|+-.+....
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 688899999999999988754 2222334444447899999999999986 3334455778998886543
No 25
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=65.71 E-value=29 Score=28.37 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=50.4
Q ss_pred CceeEEEccc--cccCccchHHHHHHHHhhCCCeEEeeCccC-----CCC-------cchHHHHHHHhhcCeEEEEeecc
Q 039731 12 SKYDVFLSFR--GEDTRDNFTSHLHAALCRKKIKTFIDEELN-----RGD-------EISPAILKAIEGSKITVIIFSKN 77 (315)
Q Consensus 12 ~~ydVFIS~~--~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~-----~G~-------~i~~~i~~aI~~S~~~Ivv~S~~ 77 (315)
.+..|||+=. +..........+.+.|++.| .++.+.... .|. .|...-.+.|++|+++|++++
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-- 86 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-- 86 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence 3467999732 11111224588899999999 876543221 221 122233578999999999987
Q ss_pred ccCChHhHHHHHHHHHH
Q 039731 78 YASSKWCLDELVKILEC 94 (315)
Q Consensus 78 y~~S~wcl~El~~i~~~ 94 (315)
-.+.-+..|+-.+...
T Consensus 87 -~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 87 -QPSLGVGYELGRAVAL 102 (165)
T ss_dssp -SCCHHHHHHHHHHHHT
T ss_pred -CCCCCHHHHHHHHHHC
Confidence 4566788899888653
No 26
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.07 E-value=1 Score=37.69 Aligned_cols=16 Identities=19% Similarity=-0.066 Sum_probs=12.3
Q ss_pred CCcEEEEEeeCCCCCC
Q 039731 269 IRLKVSLLASKVDSAS 284 (315)
Q Consensus 269 ~~kKvLIVLDDVd~~~ 284 (315)
.+++.+||+||++...
T Consensus 124 ~~~~~vlviDe~~~l~ 139 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLS 139 (250)
T ss_dssp SSSSEEEEEETGGGSC
T ss_pred cCCceEEEEECccccc
Confidence 3467999999998753
No 27
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=59.28 E-value=10 Score=30.91 Aligned_cols=14 Identities=7% Similarity=0.010 Sum_probs=11.2
Q ss_pred CcEEEEEeeCCCCC
Q 039731 270 RLKVSLLASKVDSA 283 (315)
Q Consensus 270 ~kKvLIVLDDVd~~ 283 (315)
.++.+||+||++..
T Consensus 101 ~~~~vliiDe~~~l 114 (226)
T 2chg_A 101 APFKIIFLDEADAL 114 (226)
T ss_dssp CSCEEEEEETGGGS
T ss_pred cCceEEEEeChhhc
Confidence 46788999998875
No 28
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=54.99 E-value=40 Score=27.47 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=49.6
Q ss_pred eEEEc--cccccCccchHHHHHHHHhhCCCeEEeeC----cc-CCCC-------cchHHHHHHHhhcCeEEEEeeccccC
Q 039731 15 DVFLS--FRGEDTRDNFTSHLHAALCRKKIKTFIDE----EL-NRGD-------EISPAILKAIEGSKITVIIFSKNYAS 80 (315)
Q Consensus 15 dVFIS--~~~~D~r~~fv~~L~~~L~~~gi~~f~D~----~~-~~G~-------~i~~~i~~aI~~S~~~Ivv~S~~y~~ 80 (315)
.||++ +++.+.+..+...+.+.|++.| .|+... ++ ..|+ .|.+.-.++|+.|+++|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 45665 3343223468899999999999 675432 12 1222 244455678999999999988 55
Q ss_pred ChHhHHHHHHHHHH
Q 039731 81 SKWCLDELVKILEC 94 (315)
Q Consensus 81 S~wcl~El~~i~~~ 94 (315)
|.=...|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 67778899888654
No 29
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=50.61 E-value=50 Score=27.14 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=47.1
Q ss_pred cchHHHHHHHHhhC--CCeEEeeC--cc---CCCCcchHHH----HHHHhhcCeEEEEeeccccCChHhHHHHHHHHHH
Q 039731 27 DNFTSHLHAALCRK--KIKTFIDE--EL---NRGDEISPAI----LKAIEGSKITVIIFSKNYASSKWCLDELVKILEC 94 (315)
Q Consensus 27 ~~fv~~L~~~L~~~--gi~~f~D~--~~---~~G~~i~~~i----~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i~~~ 94 (315)
..+...+.++|+.. |+.+|.-. .. .++..+...| .++|++|+++|.++. ....+..+..|+-.+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~ 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC
Confidence 35788899999875 88888643 11 1233344444 467999999999995 344678888999888753
No 30
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=49.42 E-value=5.9 Score=36.17 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=13.8
Q ss_pred cccceeeeeeeccccccccCCCccc
Q 039731 188 EECTQIRKLHYDFHDNVGTSGNSES 212 (315)
Q Consensus 188 ~~~~~l~~i~~d~~~~~GmGGiGK~ 212 (315)
-+..++++|+ |-|||||+
T Consensus 45 i~~aKVIAIa-------GKGGVGKT 62 (314)
T 3fwy_A 45 ITGAKVFAVY-------GKGGIGKS 62 (314)
T ss_dssp --CCEEEEEE-------CSTTSSHH
T ss_pred CCCceEEEEE-------CCCccCHH
Confidence 3457888888 99999994
No 31
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=47.92 E-value=34 Score=27.24 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=38.7
Q ss_pred EEEccccccCccchHHHHHHHHhhCCCeEEeeC-----------------ccCCC-C-cchHHHHHHHhhcCeEEEEeec
Q 039731 16 VFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-----------------ELNRG-D-EISPAILKAIEGSKITVIIFSK 76 (315)
Q Consensus 16 VFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-----------------~~~~G-~-~i~~~i~~aI~~S~~~Ivv~S~ 76 (315)
||||.+..|. .-+-.+.+.|.+.|+.++--. .+.-| + .-.++|.+.|++-.+-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999988774 344457778888888765211 01111 1 0004678888888888888877
Q ss_pred cc
Q 039731 77 NY 78 (315)
Q Consensus 77 ~y 78 (315)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 32
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.90 E-value=28 Score=33.27 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=12.3
Q ss_pred CCcEEEEEeeCCCCC
Q 039731 269 IRLKVSLLASKVDSA 283 (315)
Q Consensus 269 ~~kKvLIVLDDVd~~ 283 (315)
..++.+|++|+|+..
T Consensus 104 ~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 104 AGRRTILFVDEVHRF 118 (447)
T ss_dssp TTCCEEEEEETTTCC
T ss_pred cCCCcEEEEeChhhh
Confidence 456789999999876
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=42.82 E-value=14 Score=30.42 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=8.7
Q ss_pred cccCCCccchh
Q 039731 204 VGTSGNSESID 214 (315)
Q Consensus 204 ~GmGGiGK~vy 214 (315)
+|..|.||+..
T Consensus 60 ~G~~GtGKT~l 70 (202)
T 2w58_A 60 HGSFGVGKTYL 70 (202)
T ss_dssp ECSTTSSHHHH
T ss_pred ECCCCCCHHHH
Confidence 39999999544
No 34
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=37.73 E-value=95 Score=24.54 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCceeE-EEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEe
Q 039731 11 QSKYDV-FLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIF 74 (315)
Q Consensus 11 ~~~ydV-FIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~ 74 (315)
..+.+| .|.-+.. ...|+..+...|...|+++=+|. ...++.+...|.++-..---.++|+
T Consensus 6 ~~P~Qv~IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 6 SGPVDCSVIVVNKQ--TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CCCCTEEEEESSSG--GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCeEEEEEeCcc--hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 344554 3334333 25799999999999999997763 1227788877777644333344444
No 35
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=36.50 E-value=17 Score=34.56 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=13.8
Q ss_pred HHHhhCCcEEEEEeeCCCCCC
Q 039731 264 IQRRHIRLKVSLLASKVDSAS 284 (315)
Q Consensus 264 i~~rL~~kKvLIVLDDVd~~~ 284 (315)
+.++++.+.-+|+|||++...
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGS
T ss_pred HHHHhcCCCCEEEEeCccccc
Confidence 445555456688899987654
No 36
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=34.32 E-value=21 Score=31.00 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=10.4
Q ss_pred cEEEEEeeCCCCC
Q 039731 271 LKVSLLASKVDSA 283 (315)
Q Consensus 271 kKvLIVLDDVd~~ 283 (315)
...+|+|||++..
T Consensus 110 ~~~vl~iDEid~l 122 (285)
T 3h4m_A 110 APSIIFIDEIDAI 122 (285)
T ss_dssp CSEEEEEETTHHH
T ss_pred CCeEEEEECHHHh
Confidence 4579999999864
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=33.55 E-value=25 Score=29.93 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=9.1
Q ss_pred CcEEEEEeeCCCCC
Q 039731 270 RLKVSLLASKVDSA 283 (315)
Q Consensus 270 ~kKvLIVLDDVd~~ 283 (315)
....+|+|||++..
T Consensus 97 ~~~~vl~iDeid~l 110 (262)
T 2qz4_A 97 RAPCIVYIDEIDAV 110 (262)
T ss_dssp TCSEEEEEECC---
T ss_pred cCCeEEEEeCcchh
Confidence 34689999999976
No 38
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.06 E-value=24 Score=30.85 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=11.7
Q ss_pred CCcEEEEEeeCCCCC
Q 039731 269 IRLKVSLLASKVDSA 283 (315)
Q Consensus 269 ~~kKvLIVLDDVd~~ 283 (315)
.+++.+||+||++..
T Consensus 105 ~~~~~viiiDe~~~l 119 (323)
T 1sxj_B 105 PGKHKIVILDEADSM 119 (323)
T ss_dssp TTCCEEEEEESGGGS
T ss_pred CCCceEEEEECcccC
Confidence 345789999999875
No 39
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=31.04 E-value=38 Score=23.98 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHHHHHHHhhCCCeEEeeC-ccC---CCCcchHHHHHHHhhc
Q 039731 30 TSHLHAALCRKKIKTFIDE-ELN---RGDEISPAILKAIEGS 67 (315)
Q Consensus 30 v~~L~~~L~~~gi~~f~D~-~~~---~G~~i~~~i~~aI~~S 67 (315)
+..|...|.++||..|.|. .+. |-..+++++...+.+.
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 3457799999999999997 432 3346777777777543
No 40
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=30.46 E-value=22 Score=31.53 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=10.9
Q ss_pred CCcEEEEEeeCCCCC
Q 039731 269 IRLKVSLLASKVDSA 283 (315)
Q Consensus 269 ~~kKvLIVLDDVd~~ 283 (315)
+.+..+|+|||+|..
T Consensus 97 ~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 97 KGNMCCLFINDLDAG 111 (293)
T ss_dssp TSSCCCEEEECCC--
T ss_pred cCCCeEEEEechhhh
Confidence 456789999999764
No 41
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=30.26 E-value=14 Score=27.16 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=18.7
Q ss_pred EEccccccCccchHHHHHHHHhhCC
Q 039731 17 FLSFRGEDTRDNFTSHLHAALCRKK 41 (315)
Q Consensus 17 FIS~~~~D~r~~fv~~L~~~L~~~g 41 (315)
|.|||+.....+|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4556666656789999999998654
No 42
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=29.59 E-value=1.3e+02 Score=23.23 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=33.9
Q ss_pred CCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHHHHHHHHhhhCCCeeeeEEEe
Q 039731 51 NRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYR 108 (315)
Q Consensus 51 ~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~ViPIfy~ 108 (315)
.|++.+.+.+.+.|++++..|.+.++.+ .+ .++..++......+-. +=|+++
T Consensus 10 ~p~~~~~~~~~~~i~~A~~~I~i~~~~~-~~----~~i~~aL~~a~~rGV~-Vril~~ 61 (155)
T 1byr_A 10 SPEGSARVLVLSAIDSAKTSIRMMAYSF-TA----PDIMKALVAAKKRGVD-VKIVID 61 (155)
T ss_dssp ETTTHHHHHHHHHHHHCSSEEEEEESSB-CC----HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred CCCCcHHHHHHHHHHHHhhEEEEEEEEe-CC----HHHHHHHHHHHHCCCE-EEEEEe
Confidence 3667778899999999999999998866 44 3444444433333433 334444
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=28.85 E-value=36 Score=29.94 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=9.4
Q ss_pred cccCCCccchhc
Q 039731 204 VGTSGNSESIDR 215 (315)
Q Consensus 204 ~GmGGiGK~vy~ 215 (315)
+|..|+||++..
T Consensus 44 ~G~~GtGKT~la 55 (324)
T 1hqc_A 44 FGPPGLGKTTLA 55 (324)
T ss_dssp ECCTTCCCHHHH
T ss_pred ECCCCCCHHHHH
Confidence 399999996554
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.83 E-value=21 Score=34.55 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=12.5
Q ss_pred CCcEEEEEeeCCCCCC
Q 039731 269 IRLKVSLLASKVDSAS 284 (315)
Q Consensus 269 ~~kKvLIVLDDVd~~~ 284 (315)
..++.+|++|+|+...
T Consensus 146 ~~~~~vliIDEid~l~ 161 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMS 161 (516)
T ss_dssp STTSEEEEECSGGGCC
T ss_pred cCCCeEEEEECCCccc
Confidence 3567899999998763
No 45
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=25.93 E-value=17 Score=27.09 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=16.9
Q ss_pred EccccccCccchHHHHHHHHhhCC
Q 039731 18 LSFRGEDTRDNFTSHLHAALCRKK 41 (315)
Q Consensus 18 IS~~~~D~r~~fv~~L~~~L~~~g 41 (315)
.|||+.+...+|+..|.+.|++.+
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeecCCCCCeeHHHHHHHHHHhC
Confidence 344555555779999999998654
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=25.40 E-value=65 Score=28.43 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.0
Q ss_pred CCcEEEEEeeCCCC
Q 039731 269 IRLKVSLLASKVDS 282 (315)
Q Consensus 269 ~~kKvLIVLDDVd~ 282 (315)
.....+|+||++|.
T Consensus 106 ~~~p~il~iDEid~ 119 (301)
T 3cf0_A 106 QAAPCVLFFDELDS 119 (301)
T ss_dssp HTCSEEEEECSTTH
T ss_pred hcCCeEEEEEChHH
Confidence 34568999999985
No 47
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=25.16 E-value=1.4e+02 Score=27.84 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=37.5
Q ss_pred ceeEEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHh-hcCeEEEEee
Q 039731 13 KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIE-GSKITVIIFS 75 (315)
Q Consensus 13 ~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S 75 (315)
.+||+|-.-+++. ...+..+++.|++.|+++-+|.. +..+...+..|-. .... ++|+.
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~-~iiiG 390 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADF-AVIFG 390 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSE-EEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCE-EEEEC
Confidence 4899866555544 46788999999999999988861 2345545544433 3444 44443
No 48
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=25.02 E-value=16 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=20.3
Q ss_pred CceeEEEcc---------ccccCccchHHHHHHHHhhCC
Q 039731 12 SKYDVFLSF---------RGEDTRDNFTSHLHAALCRKK 41 (315)
Q Consensus 12 ~~ydVFIS~---------~~~D~r~~fv~~L~~~L~~~g 41 (315)
..-|.+++| |+.+...+|+..|.+.|++.+
T Consensus 11 ~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 11 DEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 356777766 444445678999988887643
No 49
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=24.79 E-value=1.9e+02 Score=23.51 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=50.9
Q ss_pred eEEEc---cccccCccchHHHHHHHHhhC--CCeEEeeC--cc--------CCC--------CcchHHHHHHHhhcCeEE
Q 039731 15 DVFLS---FRGEDTRDNFTSHLHAALCRK--KIKTFIDE--EL--------NRG--------DEISPAILKAIEGSKITV 71 (315)
Q Consensus 15 dVFIS---~~~~D~r~~fv~~L~~~L~~~--gi~~f~D~--~~--------~~G--------~~i~~~i~~aI~~S~~~I 71 (315)
.||+. |+..+ ..+...+.+.|++. |+.+|.-. .. ..+ ..|...=.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 46665 33333 35888999999999 88887643 22 111 122334456899999999
Q ss_pred EEeeccccCChHhHHHHHHHHHH
Q 039731 72 IIFSKNYASSKWCLDELVKILEC 94 (315)
Q Consensus 72 vv~S~~y~~S~wcl~El~~i~~~ 94 (315)
.++...-.. .=...|+-.+...
T Consensus 87 A~ldg~~~D-~GTa~EiGyA~al 108 (167)
T 1s2d_A 87 FLYDMDQLD-DGSAFXIGFMRAM 108 (167)
T ss_dssp EEEESSSCC-HHHHHHHHHHHHT
T ss_pred EECCCCCCC-CCceeehhhHhhC
Confidence 999875554 5577898887653
No 50
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.40 E-value=55 Score=39.27 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=34.7
Q ss_pred ccccCCCccchhccccccccc-ee--eccccCCccCHHHHHHHHHHHhcCCCCCcCChhHHHHHHHHhhCCcEEEEEeeC
Q 039731 203 NVGTSGNSESIDRSGELEVES-IC--REQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASK 279 (315)
Q Consensus 203 ~~GmGGiGK~vy~~i~~~Fe~-~~--~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~~rL~~kKvLIVLDD 279 (315)
+||+||.||....++...--+ .+ ++.++.+ |..+....|=. + +.+..+.++++..+++|
T Consensus 1651 LVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y--~~~~f~eDLk~-l---------------~~~aG~~~~~~vFL~tD 1712 (3245)
T 3vkg_A 1651 LIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNY--KSSDFDDDLRM-L---------------LKRAGCKEEKICFIFDE 1712 (3245)
T ss_dssp EEESTTSSHHHHHHHHHHHTTCEEECCC----C--CHHHHHHHHHH-H---------------HHHHHTSCCCEEEEEEG
T ss_pred EecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCC--CHHHHHHHHHH-H---------------HHHHhcCCCCEEEEEec
Confidence 789999999655554443221 11 5556555 87766554421 1 23455788888888887
Q ss_pred C
Q 039731 280 V 280 (315)
Q Consensus 280 V 280 (315)
-
T Consensus 1713 ~ 1713 (3245)
T 3vkg_A 1713 S 1713 (3245)
T ss_dssp G
T ss_pred c
Confidence 4
No 51
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.25 E-value=63 Score=38.13 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=37.6
Q ss_pred ccccCCCccchhcccccc---ccceeeccccCCccCHHHHHHHHHHHhcCCCCCcCChhHHHHHHHHhhCCcEEEEEeeC
Q 039731 203 NVGTSGNSESIDRSGELE---VESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASK 279 (315)
Q Consensus 203 ~~GmGGiGK~vy~~i~~~---Fe~~~~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~~rL~~kKvLIVLDD 279 (315)
+||+||.||....++... ++..-++.++.+ |..+....|=. -+.+..+.++++..+++|
T Consensus 1614 LvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y--~~~~f~eDLk~----------------l~~~aG~~~~~~vFL~tD 1675 (2695)
T 4akg_A 1614 LIGASRTGKTILTRFVAWLNGLKIVQPKIHRHS--NLSDFDMILKK----------------AISDCSLKESRTCLIIDE 1675 (2695)
T ss_dssp EECTTTSCHHHHHHHHHHHTTCEEECCCCCTTC--CHHHHHHHHHH----------------HHHHHHHSCCCEEEEEET
T ss_pred EECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCC--CHHHHHHHHHH----------------HHHHcCCCCCceEEEEec
Confidence 789999999665555443 221115555554 87666555421 123456788888888888
Q ss_pred CC
Q 039731 280 VD 281 (315)
Q Consensus 280 Vd 281 (315)
-.
T Consensus 1676 ~q 1677 (2695)
T 4akg_A 1676 SN 1677 (2695)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 52
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=23.78 E-value=20 Score=27.13 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=19.9
Q ss_pred ceeEEEcc---------ccccCccchHHHHHHHHhhCC
Q 039731 13 KYDVFLSF---------RGEDTRDNFTSHLHAALCRKK 41 (315)
Q Consensus 13 ~ydVFIS~---------~~~D~r~~fv~~L~~~L~~~g 41 (315)
.-|.+++| |+.....+|+..|.+.|++.+
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 45666655 455445679999999998654
No 53
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=23.40 E-value=20 Score=27.16 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=16.7
Q ss_pred EccccccCccchHHHHHHHHhhCC
Q 039731 18 LSFRGEDTRDNFTSHLHAALCRKK 41 (315)
Q Consensus 18 IS~~~~D~r~~fv~~L~~~L~~~g 41 (315)
.|||+.....+|+..|.+.|++.+
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 344555555779999999997644
No 54
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=20.76 E-value=65 Score=27.96 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=10.9
Q ss_pred CcEEEEEeeCCCCC
Q 039731 270 RLKVSLLASKVDSA 283 (315)
Q Consensus 270 ~kKvLIVLDDVd~~ 283 (315)
....+|+||+++..
T Consensus 112 ~~~~vl~iDEid~l 125 (297)
T 3b9p_A 112 MQPSIIFIDEVDSL 125 (297)
T ss_dssp TCSEEEEEETGGGT
T ss_pred cCCcEEEeccHHHh
Confidence 35578899999876
No 55
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=20.64 E-value=81 Score=28.22 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=11.4
Q ss_pred CcEEEEEeeCCCCC
Q 039731 270 RLKVSLLASKVDSA 283 (315)
Q Consensus 270 ~kKvLIVLDDVd~~ 283 (315)
.+..+|++|++|..
T Consensus 104 ~~~~vl~iDEid~l 117 (322)
T 1xwi_A 104 NKPSIIFIDEIDSL 117 (322)
T ss_dssp TSSEEEEEETTTGG
T ss_pred cCCcEEEeecHHHh
Confidence 45688999999876
No 56
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=20.46 E-value=28 Score=27.12 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=17.6
Q ss_pred EEccccccCccchHHHHHHHHhhCC
Q 039731 17 FLSFRGEDTRDNFTSHLHAALCRKK 41 (315)
Q Consensus 17 FIS~~~~D~r~~fv~~L~~~L~~~g 41 (315)
|.|||......+|+..|.+.|++.+
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3445555555789999999998654
No 57
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=20.31 E-value=1.6e+02 Score=27.97 Aligned_cols=62 Identities=8% Similarity=0.035 Sum_probs=40.7
Q ss_pred CceeEEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEeecc
Q 039731 12 SKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKN 77 (315)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~ 77 (315)
..+||+|-.-+++. ...+-.+++.|++.|+++-+|.. +..+...+..|-..---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 35899986655554 45788999999999999988761 3445555555544333345555443
No 58
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=20.23 E-value=1.5e+02 Score=27.34 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=38.4
Q ss_pred ceeEEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHh-hcCeEEEE
Q 039731 13 KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIE-GSKITVII 73 (315)
Q Consensus 13 ~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~-~S~~~Ivv 73 (315)
.++|+|---+++. ...+..|++.|++.|+++-+|. .+..+...+..|-. .....|+|
T Consensus 298 p~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~---~~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 298 PVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp SSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEE
T ss_pred CeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHhcCCCEEEEE
Confidence 4789876555443 5688899999999999999986 23455555555533 34444444
Done!