Query 039732
Match_columns 214
No_of_seqs 141 out of 1174
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 2.4E-42 5.2E-47 282.2 19.6 172 1-193 97-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 2.2E-40 4.8E-45 271.1 19.7 186 1-193 101-289 (300)
3 KOG1575 Voltage-gated shaker-l 100.0 9.4E-40 2E-44 271.8 19.0 180 1-198 123-334 (336)
4 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.3E-37 2.7E-42 257.2 21.1 170 1-192 85-255 (267)
5 COG0667 Tas Predicted oxidored 100.0 2.5E-37 5.4E-42 260.4 19.2 171 1-190 114-310 (316)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 1.6E-36 3.5E-41 259.1 19.5 172 1-190 126-334 (346)
7 TIGR01293 Kv_beta voltage-depe 100.0 1.2E-36 2.5E-41 257.3 18.1 169 1-187 108-316 (317)
8 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.3E-36 7.1E-41 249.7 20.2 171 1-192 95-265 (275)
9 PRK10625 tas putative aldo-ket 100.0 1E-35 2.3E-40 254.2 19.0 186 1-189 120-339 (346)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 9.6E-36 2.1E-40 247.5 16.5 171 1-188 94-282 (283)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 2E-34 4.2E-39 239.9 19.9 170 1-187 105-285 (285)
12 PRK10376 putative oxidoreducta 100.0 1.2E-33 2.5E-38 236.2 19.3 168 1-189 118-288 (290)
13 PLN02587 L-galactose dehydroge 100.0 1.2E-33 2.6E-38 238.6 18.6 175 1-190 107-301 (314)
14 PRK14863 bifunctional regulato 100.0 1.4E-33 3E-38 235.8 14.9 168 1-186 98-279 (292)
15 COG4989 Predicted oxidoreducta 100.0 6.3E-33 1.4E-37 219.4 12.6 173 1-190 115-294 (298)
16 COG1453 Predicted oxidoreducta 99.9 5.6E-27 1.2E-31 194.8 11.6 168 1-188 105-284 (391)
17 KOG1576 Predicted oxidoreducta 99.9 4.1E-24 8.8E-29 170.8 14.5 164 1-178 132-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.6 1.3E-07 2.7E-12 75.4 6.9 75 37-111 154-229 (285)
19 PRK10558 alpha-dehydro-beta-de 91.8 2.8 6.1E-05 34.5 10.4 102 45-175 10-116 (256)
20 PRK10128 2-keto-3-deoxy-L-rham 90.1 6 0.00013 32.8 10.8 103 45-175 9-115 (267)
21 TIGR03239 GarL 2-dehydro-3-deo 89.9 5.5 0.00012 32.7 10.4 99 49-175 7-109 (249)
22 TIGR02311 HpaI 2,4-dihydroxyhe 85.1 17 0.00037 29.7 10.6 98 47-174 5-108 (249)
23 TIGR01228 hutU urocanate hydra 82.1 3.1 6.7E-05 37.3 5.2 49 37-86 209-259 (545)
24 PRK05414 urocanate hydratase; 81.8 3.4 7.4E-05 37.2 5.4 49 37-86 218-268 (556)
25 TIGR00289 conserved hypothetic 79.5 21 0.00046 28.7 8.9 115 63-191 46-170 (222)
26 TIGR02026 BchE magnesium-proto 77.2 56 0.0012 29.5 12.5 138 23-171 206-361 (497)
27 cd07944 DRE_TIM_HOA_like 4-hyd 77.1 40 0.00087 27.8 10.4 139 1-173 31-177 (266)
28 PRK07094 biotin synthase; Prov 77.0 42 0.00091 28.2 10.6 121 36-171 70-203 (323)
29 TIGR00216 ispH_lytB (E)-4-hydr 76.8 17 0.00038 30.3 7.9 114 45-169 147-273 (280)
30 cd03174 DRE_TIM_metallolyase D 76.8 38 0.00082 27.4 10.6 68 39-109 51-135 (265)
31 COG1140 NarY Nitrate reductase 76.4 1.8 3.9E-05 37.5 2.0 53 51-104 263-317 (513)
32 PF07021 MetW: Methionine bios 76.4 15 0.00034 28.9 7.1 74 40-113 90-170 (193)
33 COG0761 lytB 4-Hydroxy-3-methy 75.5 18 0.00039 30.3 7.5 107 53-170 159-278 (294)
34 COG0282 ackA Acetate kinase [E 75.0 32 0.00068 30.1 9.1 121 45-171 163-291 (396)
35 TIGR00290 MJ0570_dom MJ0570-re 74.9 39 0.00084 27.3 9.2 116 63-191 46-171 (223)
36 PRK12360 4-hydroxy-3-methylbut 74.9 25 0.00055 29.4 8.4 107 52-169 157-274 (281)
37 PRK01045 ispH 4-hydroxy-3-meth 73.4 30 0.00064 29.2 8.5 108 52-170 156-276 (298)
38 PF01175 Urocanase: Urocanase; 71.9 6.6 0.00014 35.4 4.4 49 37-86 208-258 (546)
39 COG1149 MinD superfamily P-loo 71.5 8.4 0.00018 32.0 4.7 50 62-113 201-250 (284)
40 PRK13958 N-(5'-phosphoribosyl) 70.4 19 0.00042 28.5 6.5 64 1-85 19-83 (207)
41 PRK07535 methyltetrahydrofolat 67.9 56 0.0012 26.9 9.0 72 38-111 54-125 (261)
42 PLN02363 phosphoribosylanthran 67.0 24 0.00053 29.0 6.6 66 1-86 65-131 (256)
43 cd01994 Alpha_ANH_like_IV This 65.6 63 0.0014 25.3 9.1 129 63-208 46-187 (194)
44 cd00308 enolase_like Enolase-s 64.1 26 0.00057 27.9 6.3 70 42-113 134-207 (229)
45 PF02401 LYTB: LytB protein; 63.8 22 0.00047 29.8 5.8 107 52-169 155-274 (281)
46 PRK01222 N-(5'-phosphoribosyl) 63.4 28 0.0006 27.7 6.2 65 1-86 21-86 (210)
47 PRK07945 hypothetical protein; 62.4 1E+02 0.0022 26.4 12.1 69 38-107 206-289 (335)
48 cd00739 DHPS DHPS subgroup of 62.3 74 0.0016 26.1 8.6 66 40-110 63-128 (257)
49 TIGR01928 menC_lowGC/arch o-su 62.3 43 0.00093 28.4 7.5 72 40-113 210-285 (324)
50 COG1751 Uncharacterized conser 62.0 69 0.0015 24.4 7.8 76 38-113 12-94 (186)
51 COG0135 TrpF Phosphoribosylant 62.0 80 0.0017 25.2 8.8 57 46-107 44-103 (208)
52 PF01081 Aldolase: KDPG and KH 61.2 20 0.00042 28.4 4.8 118 38-190 19-148 (196)
53 COG1831 Predicted metal-depend 59.4 47 0.001 27.6 6.8 66 38-103 106-185 (285)
54 COG0159 TrpA Tryptophan syntha 57.9 14 0.0003 30.6 3.6 35 153-187 208-243 (265)
55 PRK00087 4-hydroxy-3-methylbut 57.2 57 0.0012 30.6 8.0 108 51-169 153-271 (647)
56 cd03319 L-Ala-DL-Glu_epimerase 56.2 52 0.0011 27.6 7.0 69 42-112 217-289 (316)
57 TIGR03471 HpnJ hopanoid biosyn 55.8 1.5E+02 0.0033 26.5 11.2 123 34-171 225-361 (472)
58 COG2987 HutU Urocanate hydrata 55.6 19 0.00042 32.1 4.2 50 36-86 217-268 (561)
59 cd03315 MLE_like Muconate lact 55.6 38 0.00082 27.7 5.9 70 42-113 169-242 (265)
60 cd00423 Pterin_binding Pterin 55.5 1.1E+02 0.0025 24.9 8.7 69 39-112 62-130 (258)
61 PRK04452 acetyl-CoA decarbonyl 55.2 1.3E+02 0.0029 25.6 9.4 71 38-111 109-184 (319)
62 PRK14457 ribosomal RNA large s 54.4 1.4E+02 0.003 25.8 9.3 103 5-113 211-330 (345)
63 cd03322 rpsA The starvation se 53.9 56 0.0012 28.2 6.9 70 40-111 201-274 (361)
64 TIGR03822 AblA_like_2 lysine-2 53.7 1.4E+02 0.003 25.3 10.3 74 38-113 152-238 (321)
65 PRK14461 ribosomal RNA large s 53.5 1.5E+02 0.0034 25.8 9.4 81 36-117 252-355 (371)
66 PRK13803 bifunctional phosphor 52.8 1.2E+02 0.0026 28.3 9.3 87 1-106 21-108 (610)
67 PRK06015 keto-hydroxyglutarate 52.4 56 0.0012 25.9 6.1 62 39-107 40-102 (201)
68 PRK14331 (dimethylallyl)adenos 52.2 1.2E+02 0.0026 26.9 8.9 26 34-60 173-198 (437)
69 PF06506 PrpR_N: Propionate ca 52.0 19 0.00041 27.6 3.4 67 36-107 61-130 (176)
70 PRK09058 coproporphyrinogen II 51.7 1.8E+02 0.0038 26.0 10.9 100 9-111 63-182 (449)
71 TIGR02329 propionate_PrpR prop 51.5 75 0.0016 29.1 7.6 70 36-108 81-151 (526)
72 PRK08392 hypothetical protein; 51.0 1.2E+02 0.0026 23.9 11.3 96 38-142 102-208 (215)
73 PRK13602 putative ribosomal pr 50.9 70 0.0015 21.3 5.6 58 45-109 3-60 (82)
74 TIGR01496 DHPS dihydropteroate 50.5 1.4E+02 0.003 24.5 9.3 64 41-110 63-126 (257)
75 PRK05799 coproporphyrinogen II 50.0 1.7E+02 0.0036 25.2 10.8 72 39-110 37-117 (374)
76 TIGR03551 F420_cofH 7,8-dideme 50.0 1.3E+02 0.0029 25.6 8.6 72 35-107 69-156 (343)
77 TIGR01502 B_methylAsp_ase meth 49.7 1.7E+02 0.0036 26.0 9.2 71 39-111 278-357 (408)
78 PRK14459 ribosomal RNA large s 49.6 1.3E+02 0.0028 26.3 8.4 78 36-113 262-359 (373)
79 TIGR02534 mucon_cyclo muconate 49.2 53 0.0012 28.3 6.1 70 41-112 226-299 (368)
80 PRK14332 (dimethylallyl)adenos 48.8 2E+02 0.0043 25.7 10.4 138 23-172 167-327 (449)
81 COG0159 TrpA Tryptophan syntha 48.2 1.6E+02 0.0035 24.5 12.6 75 36-112 76-157 (265)
82 cd03318 MLE Muconate Lactonizi 48.2 45 0.00097 28.7 5.4 69 41-111 227-299 (365)
83 PRK08599 coproporphyrinogen II 47.3 1.9E+02 0.0041 25.0 10.2 75 38-112 34-120 (377)
84 cd03327 MR_like_2 Mandelate ra 47.1 50 0.0011 28.2 5.5 66 41-108 210-279 (341)
85 PRK14455 ribosomal RNA large s 47.0 1.6E+02 0.0036 25.4 8.7 80 37-117 244-340 (356)
86 COG4626 Phage terminase-like p 46.7 95 0.0021 28.6 7.3 76 36-111 410-485 (546)
87 PRK14017 galactonate dehydrata 46.4 74 0.0016 27.6 6.5 67 42-110 217-287 (382)
88 PRK08609 hypothetical protein; 46.0 2.5E+02 0.0054 26.0 11.7 96 38-142 444-552 (570)
89 PRK14338 (dimethylallyl)adenos 46.0 2.2E+02 0.0048 25.5 10.4 26 34-60 182-207 (459)
90 cd03316 MR_like Mandelate race 46.0 69 0.0015 27.3 6.3 67 41-109 228-298 (357)
91 PF11242 DUF2774: Protein of u 45.8 33 0.00071 21.7 3.0 22 128-149 15-36 (63)
92 TIGR01182 eda Entner-Doudoroff 45.7 1.1E+02 0.0024 24.3 6.8 62 39-107 44-106 (204)
93 PF00809 Pterin_bind: Pterin b 45.7 80 0.0017 24.9 6.1 70 39-112 57-126 (210)
94 TIGR00190 thiC thiamine biosyn 45.7 1.3E+02 0.0029 26.6 7.7 20 92-111 206-225 (423)
95 KOG3085 Predicted hydrolase (H 45.1 48 0.001 27.0 4.8 65 38-104 115-184 (237)
96 TIGR01662 HAD-SF-IIIA HAD-supe 45.0 1.1E+02 0.0024 21.6 6.5 39 38-77 27-73 (132)
97 PF03102 NeuB: NeuB family; I 44.8 1.1E+02 0.0023 25.0 6.8 65 92-172 59-135 (241)
98 cd04743 NPD_PKS 2-Nitropropane 44.6 1.7E+02 0.0037 25.0 8.1 62 48-109 23-89 (320)
99 PRK05692 hydroxymethylglutaryl 44.0 1.5E+02 0.0033 24.7 7.8 88 1-107 37-138 (287)
100 PRK08776 cystathionine gamma-s 43.7 2.2E+02 0.0049 24.9 9.5 75 38-113 109-186 (405)
101 cd03325 D-galactonate_dehydrat 43.5 99 0.0022 26.5 6.8 67 41-109 215-285 (352)
102 PRK07157 acetate kinase; Provi 43.4 1E+02 0.0022 27.2 6.8 122 42-170 161-289 (400)
103 cd03323 D-glucarate_dehydratas 43.0 1E+02 0.0022 27.1 6.8 69 41-111 249-321 (395)
104 PF14871 GHL6: Hypothetical gl 41.9 27 0.00058 25.7 2.6 22 92-113 47-68 (132)
105 PRK13352 thiamine biosynthesis 41.8 1.7E+02 0.0036 26.1 7.8 25 92-117 209-233 (431)
106 PRK14462 ribosomal RNA large s 41.7 1.7E+02 0.0037 25.4 7.9 81 37-118 245-342 (356)
107 PRK09249 coproporphyrinogen II 41.7 2.6E+02 0.0055 24.9 10.8 74 39-112 84-171 (453)
108 PRK14456 ribosomal RNA large s 41.1 2.3E+02 0.005 24.7 8.7 77 37-113 260-353 (368)
109 PRK15072 bifunctional D-altron 40.8 1.1E+02 0.0023 26.9 6.7 69 41-111 245-317 (404)
110 PF01081 Aldolase: KDPG and KH 40.6 88 0.0019 24.7 5.5 60 41-107 46-106 (196)
111 PRK14336 (dimethylallyl)adenos 40.5 2.6E+02 0.0056 24.7 9.8 127 34-171 151-299 (418)
112 COG0626 MetC Cystathionine bet 40.3 2E+02 0.0044 25.4 8.2 80 38-118 112-194 (396)
113 PRK12738 kbaY tagatose-bisphos 40.2 1.3E+02 0.0028 25.3 6.8 66 38-107 59-133 (286)
114 PRK06361 hypothetical protein; 40.1 1.8E+02 0.0039 22.7 8.9 91 46-144 106-197 (212)
115 TIGR01917 gly_red_sel_B glycin 39.1 1.6E+02 0.0034 26.3 7.2 69 42-111 289-373 (431)
116 cd00947 TBP_aldolase_IIB Tagat 38.9 2E+02 0.0043 24.0 7.7 66 38-107 54-128 (276)
117 TIGR01918 various_sel_PB selen 38.9 1.7E+02 0.0037 26.1 7.4 69 42-111 289-373 (431)
118 PRK09195 gatY tagatose-bisphos 38.6 2E+02 0.0043 24.1 7.6 66 38-107 59-133 (284)
119 TIGR00016 ackA acetate kinase. 38.4 1.3E+02 0.0029 26.6 6.7 118 47-170 171-296 (404)
120 PF00356 LacI: Bacterial regul 38.1 26 0.00057 20.6 1.7 42 129-174 2-43 (46)
121 COG0773 MurC UDP-N-acetylmuram 37.9 7.2 0.00016 34.8 -1.1 95 44-158 44-141 (459)
122 TIGR01858 tag_bisphos_ald clas 37.6 2.4E+02 0.0053 23.6 8.1 66 38-107 57-131 (282)
123 PRK10528 multifunctional acyl- 37.6 1.8E+02 0.0039 22.2 6.9 61 48-108 40-114 (191)
124 PF09012 FeoC: FeoC like trans 37.4 51 0.0011 20.9 3.2 27 36-62 26-52 (69)
125 PRK09427 bifunctional indole-3 37.4 1.2E+02 0.0025 27.4 6.4 32 54-87 307-339 (454)
126 PRK14335 (dimethylallyl)adenos 37.3 3E+02 0.0066 24.6 11.7 126 34-171 179-333 (455)
127 PF05920 Homeobox_KN: Homeobox 37.3 78 0.0017 18.0 3.6 30 121-150 8-37 (40)
128 PRK08610 fructose-bisphosphate 37.1 2.1E+02 0.0045 24.0 7.5 66 39-107 61-136 (286)
129 CHL00040 rbcL ribulose-1,5-bis 37.0 3.2E+02 0.007 24.8 9.6 98 38-137 218-322 (475)
130 PRK12737 gatY tagatose-bisphos 37.0 2E+02 0.0042 24.1 7.3 65 39-107 60-133 (284)
131 TIGR00676 fadh2 5,10-methylene 36.8 2.2E+02 0.0047 23.5 7.6 101 41-172 112-223 (272)
132 PF13378 MR_MLE_C: Enolase C-t 36.7 1.1E+02 0.0023 21.2 5.0 51 60-113 3-56 (111)
133 COG2861 Uncharacterized protei 36.5 1.4E+02 0.003 24.5 6.0 91 9-113 79-184 (250)
134 PRK12397 propionate kinase; Re 36.5 1.6E+02 0.0035 26.0 7.0 119 46-170 165-291 (404)
135 COG1104 NifS Cysteine sulfinat 36.3 1E+02 0.0022 27.1 5.6 76 36-112 99-181 (386)
136 PRK13347 coproporphyrinogen II 36.2 3.1E+02 0.0068 24.4 12.6 100 9-111 52-171 (453)
137 COG1131 CcmA ABC-type multidru 36.1 71 0.0015 26.7 4.7 51 8-73 156-206 (293)
138 PRK06015 keto-hydroxyglutarate 36.0 2.2E+02 0.0048 22.5 8.8 99 38-171 15-116 (201)
139 PRK07709 fructose-bisphosphate 36.0 1.6E+02 0.0034 24.7 6.6 66 39-107 61-136 (285)
140 PHA02128 hypothetical protein 36.0 1.3E+02 0.0029 21.3 5.2 71 38-108 59-150 (151)
141 TIGR03679 arCOG00187 arCOG0018 36.0 2.2E+02 0.0048 22.6 9.7 116 63-191 44-172 (218)
142 cd05006 SIS_GmhA Phosphoheptos 35.9 63 0.0014 24.5 4.0 32 38-70 114-145 (177)
143 PRK13753 dihydropteroate synth 35.6 2.6E+02 0.0057 23.4 9.1 67 39-112 63-129 (279)
144 COG2185 Sbm Methylmalonyl-CoA 35.5 1.6E+02 0.0034 22.1 5.8 56 54-113 17-74 (143)
145 PRK07114 keto-hydroxyglutarate 35.4 2.4E+02 0.0051 22.7 9.8 28 144-171 104-131 (222)
146 PF00682 HMGL-like: HMGL-like 35.4 2.3E+02 0.0049 22.5 9.3 112 39-173 43-176 (237)
147 PRK15424 propionate catabolism 35.0 1.9E+02 0.004 26.7 7.5 71 36-109 91-162 (538)
148 PRK06552 keto-hydroxyglutarate 35.0 1.3E+02 0.0027 24.1 5.7 62 39-107 49-114 (213)
149 cd04742 NPD_FabD 2-Nitropropan 34.8 1.9E+02 0.0041 25.7 7.2 67 43-110 29-103 (418)
150 cd02067 B12-binding B12 bindin 34.7 1.6E+02 0.0034 20.5 6.7 61 40-103 15-79 (119)
151 PLN02591 tryptophan synthase 34.5 79 0.0017 25.9 4.6 91 61-173 60-155 (250)
152 PF01248 Ribosomal_L7Ae: Ribos 34.4 1.4E+02 0.0031 19.9 5.8 64 40-109 2-65 (95)
153 cd01822 Lysophospholipase_L1_l 34.3 1.9E+02 0.0041 21.3 6.9 59 52-110 37-109 (177)
154 PRK01018 50S ribosomal protein 34.3 1.6E+02 0.0034 20.3 6.2 60 42-108 5-64 (99)
155 PRK02901 O-succinylbenzoate sy 33.3 1.9E+02 0.004 24.7 6.8 70 42-113 173-243 (327)
156 cd00740 MeTr MeTr subgroup of 33.3 2.7E+02 0.0058 22.8 9.5 57 57-113 73-130 (252)
157 PRK09140 2-dehydro-3-deoxy-6-p 33.2 2.4E+02 0.0053 22.2 10.7 44 145-188 97-148 (206)
158 PRK12857 fructose-1,6-bisphosp 33.0 2.8E+02 0.006 23.2 7.6 42 63-107 86-133 (284)
159 PRK14463 ribosomal RNA large s 33.0 3.2E+02 0.007 23.5 9.0 80 37-117 232-328 (349)
160 PRK07058 acetate kinase; Provi 32.8 1.4E+02 0.003 26.3 6.0 119 42-166 163-287 (396)
161 cd03317 NAAAR N-acylamino acid 32.7 2.4E+02 0.0051 24.0 7.5 69 41-111 216-288 (354)
162 PF10941 DUF2620: Protein of u 32.4 53 0.0012 23.6 2.8 25 43-68 85-109 (117)
163 TIGR01428 HAD_type_II 2-haloal 32.2 1.7E+02 0.0037 22.2 6.0 36 39-75 95-130 (198)
164 PF07287 DUF1446: Protein of u 32.1 2.1E+02 0.0045 25.0 6.9 88 40-139 10-100 (362)
165 TIGR00262 trpA tryptophan synt 32.0 2.8E+02 0.0062 22.6 8.7 74 36-111 69-150 (256)
166 PRK12379 propionate/acetate ki 31.9 2.4E+02 0.0051 25.0 7.2 120 45-170 160-287 (396)
167 PF05221 AdoHcyase: S-adenosyl 31.7 1.2E+02 0.0025 25.3 5.0 54 55-110 44-100 (268)
168 TIGR03821 AblA_like_1 lysine-2 31.7 3.2E+02 0.007 23.2 9.3 22 92-113 223-244 (321)
169 COG2159 Predicted metal-depend 31.7 3.1E+02 0.0067 22.9 8.3 67 42-112 86-167 (293)
170 PF01902 ATP_bind_4: ATP-bindi 31.7 42 0.00092 26.9 2.5 110 67-189 50-169 (218)
171 PRK06256 biotin synthase; Vali 31.6 3.2E+02 0.0069 23.1 8.9 124 35-171 90-224 (336)
172 TIGR01378 thi_PPkinase thiamin 31.5 2.6E+02 0.0055 21.9 7.0 73 74-172 34-110 (203)
173 PRK14465 ribosomal RNA large s 31.3 3.4E+02 0.0075 23.4 9.6 77 37-113 237-329 (342)
174 PF01876 RNase_P_p30: RNase P 31.2 1.4E+02 0.0031 22.0 5.2 110 41-170 14-128 (150)
175 PRK14326 (dimethylallyl)adenos 31.1 4.1E+02 0.0088 24.2 10.4 68 34-102 184-264 (502)
176 KOG1549 Cysteine desulfurase N 31.0 91 0.002 27.8 4.5 75 39-113 142-222 (428)
177 COG2102 Predicted ATPases of P 31.0 1E+02 0.0022 24.9 4.5 93 38-141 75-177 (223)
178 PF14502 HTH_41: Helix-turn-he 30.9 1E+02 0.0022 18.4 3.4 31 126-156 6-38 (48)
179 TIGR01212 radical SAM protein, 30.8 1.6E+02 0.0034 24.8 5.9 21 92-112 166-186 (302)
180 TIGR03677 rpl7ae 50S ribosomal 30.7 2E+02 0.0043 20.5 7.3 65 38-108 11-75 (117)
181 TIGR02080 O_succ_thio_ly O-suc 30.5 3.6E+02 0.0078 23.4 9.4 75 38-113 100-177 (382)
182 COG2949 SanA Uncharacterized m 30.4 2.7E+02 0.0059 22.4 6.7 48 38-85 78-132 (235)
183 PRK14469 ribosomal RNA large s 30.4 3.5E+02 0.0075 23.1 9.3 77 37-113 233-325 (343)
184 COG1358 RPL8A Ribosomal protei 30.2 2.1E+02 0.0045 20.5 6.6 66 38-109 12-77 (116)
185 PRK07998 gatY putative fructos 29.5 3.4E+02 0.0074 22.7 9.3 108 39-152 60-179 (283)
186 COG1151 6Fe-6S prismane cluste 29.4 1.4E+02 0.0031 27.6 5.6 14 127-140 478-491 (576)
187 PRK02412 aroD 3-dehydroquinate 29.2 3.2E+02 0.0068 22.3 7.8 13 175-187 236-248 (253)
188 TIGR01182 eda Entner-Doudoroff 29.2 2.9E+02 0.0063 21.9 9.0 99 38-171 19-120 (204)
189 PRK09310 aroDE bifunctional 3- 29.2 1.7E+02 0.0037 26.4 6.1 8 2-9 78-85 (477)
190 COG3033 TnaA Tryptophanase [Am 29.1 1.2E+02 0.0026 26.6 4.9 48 61-108 168-225 (471)
191 TIGR00618 sbcc exonuclease Sbc 29.1 1E+02 0.0022 30.8 5.1 51 6-72 978-1028(1042)
192 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.1 3.3E+02 0.0071 22.4 8.2 17 91-107 120-136 (275)
193 PF01053 Cys_Met_Meta_PP: Cys/ 28.7 2.8E+02 0.0061 24.2 7.3 79 38-118 104-186 (386)
194 PLN02746 hydroxymethylglutaryl 28.6 3.9E+02 0.0084 23.1 8.1 67 38-109 102-182 (347)
195 TIGR02660 nifV_homocitr homoci 28.5 3.9E+02 0.0084 23.1 12.0 64 42-106 52-130 (365)
196 COG4130 Predicted sugar epimer 28.3 3.3E+02 0.0071 22.2 7.3 52 62-113 49-107 (272)
197 TIGR02739 TraF type-F conjugat 28.2 71 0.0015 26.3 3.3 98 65-170 143-245 (256)
198 COG2069 CdhD CO dehydrogenase/ 28.1 3.8E+02 0.0083 22.9 10.1 77 36-113 182-262 (403)
199 PF14177 YkyB: YkyB-like prote 28.0 56 0.0012 24.1 2.3 18 43-60 31-48 (140)
200 COG2877 KdsA 3-deoxy-D-manno-o 28.0 1.1E+02 0.0024 25.1 4.2 61 36-106 71-135 (279)
201 COG4555 NatA ABC-type Na+ tran 27.9 1.4E+02 0.0031 24.1 4.7 38 35-74 166-203 (245)
202 PRK14464 ribosomal RNA large s 27.9 4E+02 0.0087 23.0 8.6 81 36-117 223-320 (344)
203 cd00405 PRAI Phosphoribosylant 27.8 69 0.0015 25.0 3.1 17 50-66 96-112 (203)
204 PRK06801 hypothetical protein; 27.6 3.2E+02 0.007 22.9 7.1 71 38-112 59-139 (286)
205 PRK14041 oxaloacetate decarbox 27.5 4.6E+02 0.01 23.7 10.4 21 92-112 125-145 (467)
206 PRK14325 (dimethylallyl)adenos 27.5 4.4E+02 0.0094 23.4 9.7 127 34-172 174-325 (444)
207 COG1168 MalY Bifunctional PLP- 27.4 1.5E+02 0.0033 26.0 5.2 46 63-111 146-200 (388)
208 PRK08247 cystathionine gamma-s 27.2 4E+02 0.0086 22.8 9.0 59 54-113 116-177 (366)
209 cd08606 GDPD_YPL110cp_fungi Gl 27.2 3.4E+02 0.0073 22.3 7.3 30 45-74 156-185 (286)
210 PRK08574 cystathionine gamma-s 27.0 3.9E+02 0.0085 23.1 7.9 51 63-113 125-178 (385)
211 cd00739 DHPS DHPS subgroup of 26.6 3.6E+02 0.0078 22.1 7.8 70 36-108 21-102 (257)
212 cd03314 MAL Methylaspartate am 26.5 3.6E+02 0.0079 23.5 7.5 69 41-111 244-321 (369)
213 COG4226 HicB Predicted nucleas 26.3 1.3E+02 0.0028 21.4 3.8 52 92-147 52-103 (111)
214 PF01120 Alpha_L_fucos: Alpha- 26.3 1.9E+02 0.0041 24.8 5.7 54 59-112 88-161 (346)
215 PF01978 TrmB: Sugar-specific 26.0 1.2E+02 0.0025 18.9 3.4 23 36-58 34-56 (68)
216 TIGR01579 MiaB-like-C MiaB-lik 25.7 4.5E+02 0.0098 22.9 12.1 139 23-172 151-314 (414)
217 TIGR00048 radical SAM enzyme, 25.5 4.4E+02 0.0096 22.7 9.2 80 38-118 241-337 (355)
218 PRK14466 ribosomal RNA large s 25.4 4.5E+02 0.0097 22.8 9.2 82 36-118 231-329 (345)
219 cd00502 DHQase_I Type I 3-dehy 25.2 3.4E+02 0.0074 21.4 6.8 8 51-58 111-118 (225)
220 PF06080 DUF938: Protein of un 25.2 1.7E+02 0.0036 23.3 4.7 28 92-119 121-151 (204)
221 COG0065 LeuC 3-isopropylmalate 25.2 52 0.0011 29.0 2.0 17 89-105 76-92 (423)
222 PRK12331 oxaloacetate decarbox 25.2 5E+02 0.011 23.3 9.2 16 92-107 126-141 (448)
223 cd00248 Mth938-like Mth938-lik 24.7 2.5E+02 0.0054 19.6 5.6 52 59-112 36-89 (109)
224 PRK14470 ribosomal RNA large s 24.7 4.5E+02 0.0097 22.6 8.7 80 37-117 229-325 (336)
225 PF14234 DUF4336: Domain of un 24.6 1E+02 0.0022 25.9 3.6 35 10-63 32-67 (285)
226 PRK05301 pyrroloquinoline quin 24.6 4.5E+02 0.0098 22.5 10.5 75 35-111 45-123 (378)
227 PF07894 DUF1669: Protein of u 24.6 3.1E+02 0.0067 23.1 6.4 51 49-105 144-200 (284)
228 PF12728 HTH_17: Helix-turn-he 24.5 1.5E+02 0.0033 17.1 3.7 31 43-73 16-49 (51)
229 PRK02714 O-succinylbenzoate sy 24.5 2.5E+02 0.0055 23.7 6.2 70 42-113 206-276 (320)
230 TIGR00381 cdhD CO dehydrogenas 24.4 4.9E+02 0.011 22.9 10.6 94 6-113 153-251 (389)
231 cd08605 GDPD_GDE5_like_1_plant 24.4 3.7E+02 0.0079 22.0 7.0 27 48-74 164-190 (282)
232 cd07943 DRE_TIM_HOA 4-hydroxy- 24.3 3.1E+02 0.0068 22.3 6.5 64 42-108 62-131 (263)
233 PRK09856 fructoselysine 3-epim 24.2 3.6E+02 0.0079 21.7 6.9 49 64-112 49-113 (275)
234 PRK14460 ribosomal RNA large s 24.2 4.7E+02 0.01 22.6 8.6 80 37-117 239-335 (354)
235 cd00950 DHDPS Dihydrodipicolin 24.1 2.9E+02 0.0063 22.7 6.3 76 36-111 50-135 (284)
236 cd08572 GDPD_GDE5_like Glycero 24.0 3.8E+02 0.0082 22.3 7.0 34 41-74 165-199 (293)
237 PF05368 NmrA: NmrA-like famil 23.9 3E+02 0.0066 21.4 6.3 66 45-113 37-105 (233)
238 PF05378 Hydant_A_N: Hydantoin 23.9 1.2E+02 0.0025 23.4 3.6 28 33-61 128-155 (176)
239 TIGR01261 hisB_Nterm histidino 23.7 3.2E+02 0.0069 20.5 6.2 24 38-62 31-54 (161)
240 PRK09449 dUMP phosphatase; Pro 23.6 3.2E+02 0.0069 21.1 6.3 36 38-75 97-132 (224)
241 PF00701 DHDPS: Dihydrodipicol 23.6 4E+02 0.0086 21.9 7.1 76 36-111 51-136 (289)
242 COG1167 ARO8 Transcriptional r 23.2 2.6E+02 0.0057 24.9 6.3 61 51-111 198-269 (459)
243 TIGR03569 NeuB_NnaB N-acetylne 23.1 2.9E+02 0.0063 23.7 6.2 119 38-172 15-155 (329)
244 PRK09490 metH B12-dependent me 23.0 8.5E+02 0.018 25.2 12.2 57 57-113 434-491 (1229)
245 cd00401 AdoHcyase S-adenosyl-L 23.0 2.4E+02 0.0052 25.0 5.8 53 56-110 38-93 (413)
246 PRK13936 phosphoheptose isomer 22.9 1.8E+02 0.004 22.6 4.7 36 38-74 124-159 (197)
247 TIGR01210 conserved hypothetic 22.9 4.2E+02 0.0091 22.3 7.1 22 92-113 158-179 (313)
248 PF01408 GFO_IDH_MocA: Oxidore 22.8 2.6E+02 0.0056 19.1 9.8 85 45-138 16-114 (120)
249 KOG0059 Lipid exporter ABCA1 a 22.8 1.9E+02 0.004 28.5 5.5 39 35-75 731-769 (885)
250 PF00563 EAL: EAL domain; Int 22.6 3E+02 0.0066 21.2 6.0 64 39-108 134-209 (236)
251 cd03320 OSBS o-Succinylbenzoat 22.6 2.4E+02 0.0051 23.0 5.5 69 41-112 166-237 (263)
252 COG3737 Uncharacterized conser 22.5 1.8E+02 0.0039 21.1 4.0 50 63-113 56-107 (127)
253 cd08568 GDPD_TmGDE_like Glycer 22.5 3.9E+02 0.0084 21.0 8.1 27 48-74 112-138 (226)
254 PF07476 MAAL_C: Methylasparta 22.5 4.3E+02 0.0094 21.5 6.7 68 38-107 118-194 (248)
255 PF08784 RPA_C: Replication pr 22.4 95 0.0021 21.2 2.7 20 35-54 76-95 (102)
256 cd03018 PRX_AhpE_like Peroxire 22.3 3E+02 0.0065 19.6 5.8 36 40-76 50-85 (149)
257 TIGR01686 FkbH FkbH-like domai 22.1 3.5E+02 0.0075 22.7 6.5 64 38-105 33-103 (320)
258 PF04337 DUF480: Protein of un 22.1 1.5E+02 0.0033 22.2 3.7 30 31-60 41-70 (148)
259 cd01573 modD_like ModD; Quinol 22.1 4.6E+02 0.0099 21.7 7.8 62 42-108 171-236 (272)
260 PRK06552 keto-hydroxyglutarate 22.1 4.1E+02 0.0088 21.1 10.4 28 144-171 101-128 (213)
261 PRK15440 L-rhamnonate dehydrat 22.0 3.4E+02 0.0074 23.8 6.6 67 40-108 246-318 (394)
262 cd07153 Fur_like Ferric uptake 21.7 1.5E+02 0.0032 20.6 3.6 26 36-61 33-58 (116)
263 PF01113 DapB_N: Dihydrodipico 21.7 2.8E+02 0.006 19.7 5.1 39 37-75 76-114 (124)
264 PRK10246 exonuclease subunit S 21.6 1.5E+02 0.0034 29.6 4.8 42 6-63 975-1016(1047)
265 COG4152 ABC-type uncharacteriz 21.6 3.1E+02 0.0068 22.9 5.7 38 35-74 163-200 (300)
266 PF08679 DsrD: Dissimilatory s 21.6 1.7E+02 0.0037 18.8 3.4 26 36-61 32-57 (67)
267 PLN02494 adenosylhomocysteinas 21.4 2.4E+02 0.0053 25.6 5.5 56 55-112 47-105 (477)
268 cd03328 MR_like_3 Mandelate ra 21.2 3.3E+02 0.0072 23.3 6.3 67 40-108 220-292 (352)
269 TIGR01578 MiaB-like-B MiaB-lik 21.1 5.7E+02 0.012 22.5 9.1 26 34-60 160-185 (420)
270 COG0289 DapB Dihydrodipicolina 21.0 2.5E+02 0.0055 23.3 5.2 51 36-86 77-127 (266)
271 TIGR01681 HAD-SF-IIIC HAD-supe 21.0 2.7E+02 0.0059 19.7 5.0 36 38-74 31-67 (128)
272 TIGR02402 trehalose_TreZ malto 21.0 99 0.0022 28.4 3.1 21 92-112 163-183 (542)
273 TIGR00936 ahcY adenosylhomocys 20.8 2.7E+02 0.0059 24.6 5.7 52 56-109 34-88 (406)
274 PRK14468 ribosomal RNA large s 20.8 5.4E+02 0.012 22.1 9.3 80 37-117 228-324 (343)
275 PRK04175 rpl7ae 50S ribosomal 20.8 3.3E+02 0.0071 19.6 7.2 64 39-108 16-79 (122)
276 PF13412 HTH_24: Winged helix- 20.6 1.3E+02 0.0028 17.2 2.7 20 36-55 29-48 (48)
277 cd07939 DRE_TIM_NifV Streptomy 20.5 4.7E+02 0.01 21.2 12.1 65 42-107 49-128 (259)
278 PF13518 HTH_28: Helix-turn-he 20.5 1.4E+02 0.003 17.1 2.8 22 128-150 14-35 (52)
279 COG0108 RibB 3,4-dihydroxy-2-b 20.4 2.4E+02 0.0052 22.4 4.7 16 92-107 175-190 (203)
280 PRK00180 acetate kinase A/prop 20.3 3.9E+02 0.0085 23.6 6.5 47 123-170 244-292 (402)
281 PRK09454 ugpQ cytoplasmic glyc 20.2 4.6E+02 0.01 21.0 8.5 23 52-74 140-162 (249)
282 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.1 2.4E+02 0.0052 19.6 4.5 34 38-72 59-92 (126)
283 TIGR02313 HpaI-NOT-DapA 2,4-di 20.1 5.1E+02 0.011 21.5 11.0 77 35-111 49-136 (294)
284 PRK05718 keto-hydroxyglutarate 20.1 4.5E+02 0.0098 20.9 10.5 28 144-171 100-127 (212)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.4e-42 Score=282.22 Aligned_cols=172 Identities=43% Similarity=0.761 Sum_probs=159.3
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
|||+||||+|++|||.+... ....|+|++|++++++||||+||||||+.+.++++++..++.|.+
T Consensus 97 rLg~dyvDLyLiHwP~~~~~---------------~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~ 161 (280)
T COG0656 97 RLGLDYVDLYLIHWPVPNKY---------------VVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAV 161 (280)
T ss_pred HhCCCceeEEEECCCCCccC---------------ccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCce
Confidence 69999999999999975411 116899999999999999999999999999999999999899999
Q ss_pred eecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCC
Q 039732 81 NQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSF 160 (214)
Q Consensus 81 ~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~ 160 (214)
+|++||++.++.+++++|+++||.+++|+||+. |. .++..+.+..+|+++|.|++|++|+|.+++|.++||.++
T Consensus 162 NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~-----~l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~ 235 (280)
T COG0656 162 NQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG-----KLLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKST 235 (280)
T ss_pred EEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc-----ccccChHHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCC
Confidence 999999999999999999999999999999996 32 167789999999999999999999999999999999999
Q ss_pred CHHHHHHhhccccccCCHHHHHHHhccCCCCCC
Q 039732 161 NKERLKENLDIFDWALTDHDYDKINQIPQHRMM 193 (214)
Q Consensus 161 ~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 193 (214)
+++|++||++++++.||++|+++|+++......
T Consensus 236 ~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 236 TPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 999999999999999999999999999987654
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=271.06 Aligned_cols=186 Identities=46% Similarity=0.770 Sum_probs=166.9
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCc--CC-CCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCC
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPK--ED-LVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIP 77 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~--~~-~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~ 77 (214)
+||+||+|+|++|||-..++ .+|.+. +. ....+..++|++|++++++|++|+||||||+..+++++++.++++
T Consensus 101 ~L~ldYvDLyLiH~P~~~k~----~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~ 176 (300)
T KOG1577|consen 101 KLQLDYVDLYLIHWPVAFKD----SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIK 176 (300)
T ss_pred HhChhhhheeeEecccccCC----CCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCC
Confidence 58999999999999987744 233332 11 123468999999999999999999999999999999999999999
Q ss_pred CeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEee
Q 039732 78 PSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVA 157 (214)
Q Consensus 78 ~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~ 157 (214)
|.++|+++|+..++.+++++|+++||.+.||+||++++. + .+++..+.+.++|++++.|++|++|||++++|.+|||
T Consensus 177 P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~-~~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~~vip 253 (300)
T KOG1577|consen 177 PAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--G-SDLLEDPVLKEIAKKYNKTPAQILLRWALQRGVSVIP 253 (300)
T ss_pred CccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--c-cccccCHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEe
Confidence 999999999999999999999999999999999998443 1 1678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHhhccccccCCHHHHHHHhccCCCCCC
Q 039732 158 KSFNKERLKENLDIFDWALTDHDYDKINQIPQHRMM 193 (214)
Q Consensus 158 g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 193 (214)
.++|+++|+||+..+++.||++|++.|..+....|.
T Consensus 254 KS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 254 KSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred ccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 999999999999999999999999999998887765
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=9.4e-40 Score=271.83 Aligned_cols=180 Identities=28% Similarity=0.417 Sum_probs=165.0
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||||||||+||+||+|...| .++++++|..++++|||||||+|+++.++|+++...+++++.+
T Consensus 123 rl~~~~IDl~q~Hr~D~~~p-----------------iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s 185 (336)
T KOG1575|consen 123 RLQTDYIDLLQVHRWDPMVP-----------------IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVA 185 (336)
T ss_pred hcCCCeeEEEEEcccCCCCC-----------------HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceE
Confidence 68999999999999998876 8999999999999999999999999999999999999878999
Q ss_pred eecccCcccch---HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCC---------------------------ChHHHH
Q 039732 81 NQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVM---------------------------NNEALK 130 (214)
Q Consensus 81 ~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~---------------------------~~~~l~ 130 (214)
+|++||++.++ .+++++|++.||++++|+||++ |+|+++.... ...++.
T Consensus 186 ~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (336)
T KOG1575|consen 186 VQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALS 264 (336)
T ss_pred eeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ceeccCcccccccccccccccccccccccchhhhHHHHHHHHH
Confidence 99999999986 5699999999999999999999 9999753210 024588
Q ss_pred HHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCCCCCCCcc
Q 039732 131 QIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQHRMMPRDEY 198 (214)
Q Consensus 131 ~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~~~~~~ 198 (214)
++|+++|+|++|+||+|+++++ +++|||+++++||+||++|+...|+++++..|++........+++|
T Consensus 265 ~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 265 KIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRS 334 (336)
T ss_pred HHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCC
Confidence 9999999999999999999998 9999999999999999999999999999999999999877777665
No 4
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.3e-37 Score=257.25 Aligned_cols=170 Identities=32% Similarity=0.503 Sum_probs=153.2
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCC-CCe
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTI-PPS 79 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~-~~~ 79 (214)
||||||||+|++|+|++... ...+++|++|++++++||||+||+|||+.+.+.++++..+. .++
T Consensus 85 rL~~d~iDl~~lH~~~~~~~---------------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~ 149 (267)
T PRK11172 85 KLRTDYVDLTLIHWPSPNDE---------------VSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIA 149 (267)
T ss_pred HhCCCceEEEEeCCCCCCCC---------------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCe
Confidence 79999999999999964311 23689999999999999999999999999999999887653 679
Q ss_pred eeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCC
Q 039732 80 VNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKS 159 (214)
Q Consensus 80 ~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~ 159 (214)
++|++||++.++.+++++|+++||++++|+||++ |.+. ..+.+.++|+++|+|++|+|++|+++++.++|+|+
T Consensus 150 ~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~ 222 (267)
T PRK11172 150 TNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPAQVILAWAMQLGYSVIPSS 222 (267)
T ss_pred EEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCC
Confidence 9999999999889999999999999999999998 7542 34789999999999999999999999998899999
Q ss_pred CCHHHHHHhhccccccCCHHHHHHHhccCCCCC
Q 039732 160 FNKERLKENLDIFDWALTDHDYDKINQIPQHRM 192 (214)
Q Consensus 160 ~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 192 (214)
++++|+++|+++.+++||++++++|+++.++.+
T Consensus 223 ~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 223 TKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred CCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 999999999999999999999999999986543
No 5
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.5e-37 Score=260.45 Aligned_cols=171 Identities=32% Similarity=0.514 Sum_probs=154.4
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||||||||+||+|+|+...+ .+|++.+|.+|+++||||++|+||++.+++.++.+.+ .++++
T Consensus 114 RLgtd~IDl~~iH~~d~~~p-----------------~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~ 175 (316)
T COG0667 114 RLGTDYIDLYQLHRPDPETP-----------------IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDS 175 (316)
T ss_pred HhCCCceeEEEeCCCCCCCC-----------------HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCcee
Confidence 79999999999999998655 8999999999999999999999999999999999986 46799
Q ss_pred eecccCcccch--HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCC------------C----------ChHHHHHHHHHh
Q 039732 81 NQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQV------------M----------NNEALKQIADAH 136 (214)
Q Consensus 81 ~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~------------~----------~~~~l~~~a~~~ 136 (214)
+|..||+++++ .+++++|+++||++++|+||++ |+|+++... + ....+.++|+++
T Consensus 176 ~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 254 (316)
T COG0667 176 LQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKEL 254 (316)
T ss_pred ecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999965 5689999999999999999998 999976432 0 013588899999
Q ss_pred CCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCCC
Q 039732 137 GKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQH 190 (214)
Q Consensus 137 ~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 190 (214)
|+|++|+|++|++++| +++|+|+++++||++|+++++..|++++++.|++....
T Consensus 255 g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 255 GATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred CCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 9999999999999998 89999999999999999999999999999999987654
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.6e-36 Score=259.14 Aligned_cols=172 Identities=20% Similarity=0.385 Sum_probs=150.1
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHh---cCCCC
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLA---FSTIP 77 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~---~~~~~ 77 (214)
||||||||+|++|+|+...+ .++++++|++|+++||||+||+|||++++++++.+ ..+++
T Consensus 126 rLg~d~iDl~~lH~~~~~~~-----------------~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~ 188 (346)
T PRK09912 126 RMGLEYVDIFYSHRVDENTP-----------------MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIP 188 (346)
T ss_pred HHCCCcEEEEEeCCCCCCCC-----------------HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCC
Confidence 79999999999999975443 78999999999999999999999999998876654 33467
Q ss_pred CeeeecccCcccch---HHHHHHHHhCCCeEEEeccCCCCCCCCCCCC--------C--------------C------Ch
Q 039732 78 PSVNQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQ--------V--------------M------NN 126 (214)
Q Consensus 78 ~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~--------~--------------~------~~ 126 (214)
+.++|++||++++. .+++++|+++||++++|+||++ |+|+++.. . . ..
T Consensus 189 ~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (346)
T PRK09912 189 LLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSL 267 (346)
T ss_pred cEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHH
Confidence 88999999999874 4699999999999999999998 99986421 0 0 01
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhccc-cccCCHHHHHHHhccCCC
Q 039732 127 EALKQIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIF-DWALTDHDYDKINQIPQH 190 (214)
Q Consensus 127 ~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~-~~~L~~~~~~~l~~~~~~ 190 (214)
+.+.++|+++|+|++|+||+|++++| +++|+|+++++||++|+++. .++|+++++++|+++.++
T Consensus 268 ~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 268 RLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 56788999999999999999999998 78899999999999999998 479999999999998755
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.2e-36 Score=257.26 Aligned_cols=169 Identities=26% Similarity=0.392 Sum_probs=147.4
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC----C
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST----I 76 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~----~ 76 (214)
||||||||+|++|||+...+ .++++++|++|+++||||+||+|||+.+.+.++...+. +
T Consensus 108 rL~td~iDl~~lH~~~~~~~-----------------~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 170 (317)
T TIGR01293 108 RLQLEYVDIVFANRPDPNTP-----------------MEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLI 170 (317)
T ss_pred HhCCCcEeEEEeccCCCCCC-----------------HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCC
Confidence 69999999999999976443 78999999999999999999999999999887755432 5
Q ss_pred CCeeeecccCcccch---HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCC------------C---------C-------
Q 039732 77 PPSVNQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQV------------M---------N------- 125 (214)
Q Consensus 77 ~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~------------~---------~------- 125 (214)
+|+++|++||++.++ .+++++|+++||++++|+||++ |+|+++... . .
T Consensus 171 ~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (317)
T TIGR01293 171 PPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQA 249 (317)
T ss_pred CcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCCCCCCCcccccccccchhhhhhcchhhHHHHH
Confidence 788999999999875 4799999999999999999998 999864210 0 0
Q ss_pred -hHHHHHHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhccccc--cCCHHHHHHHhcc
Q 039732 126 -NEALKQIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDW--ALTDHDYDKINQI 187 (214)
Q Consensus 126 -~~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~--~L~~~~~~~l~~~ 187 (214)
.+.+.++|+++|+|++|+|++|++++| +++|+|+++++||++|+++.+. +|+++++++|+++
T Consensus 250 ~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 250 RLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 146888999999999999999999997 6799999999999999999986 9999999999875
No 8
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.3e-36 Score=249.74 Aligned_cols=171 Identities=38% Similarity=0.738 Sum_probs=154.9
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||||||||+|++|+|+...+ ...++|++|++++++||||+||+|||+++.+.+++...+++|.+
T Consensus 95 rL~~d~iDl~~lH~p~~~~~----------------~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~ 158 (275)
T PRK11565 95 KLQLDYVDLYLMHWPVPAID----------------HYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVI 158 (275)
T ss_pred HhCCCceEEEEecCCCCCcC----------------cHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCcee
Confidence 69999999999999975321 16799999999999999999999999999999998877788999
Q ss_pred eecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCC
Q 039732 81 NQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSF 160 (214)
Q Consensus 81 ~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~ 160 (214)
+|++|+++.++.+++++|+++||++++|+||++ |. ...+..+.+.++|+++|+|++|+||||+++++.++|+|++
T Consensus 159 ~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~ 233 (275)
T PRK11565 159 NQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSV 233 (275)
T ss_pred eeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCC
Confidence 999999998888999999999999999999986 52 1234568899999999999999999999999988999999
Q ss_pred CHHHHHHhhccccccCCHHHHHHHhccCCCCC
Q 039732 161 NKERLKENLDIFDWALTDHDYDKINQIPQHRM 192 (214)
Q Consensus 161 ~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 192 (214)
+++|+++|+++.+++|+++++++|+++...++
T Consensus 234 ~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 234 TPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred CHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 99999999999999999999999999987654
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1e-35 Score=254.22 Aligned_cols=186 Identities=25% Similarity=0.322 Sum_probs=150.0
Q ss_pred CCCCCeeeEEEEecCCCCCC--CcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcC---C
Q 039732 1 TLQMDYVDLYLIHWPISAKP--SEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFS---T 75 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~---~ 75 (214)
||||||||+|++|||+.... ++. .+.+..+ ......+++|++|++|+++||||+||+|||+.+.+.++...+ .
T Consensus 120 rL~~d~iDl~~lH~p~~~~~~~~~~-~~~~~~~-~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~ 197 (346)
T PRK10625 120 RLQTDYLDLYQVHWPQRPTNCFGKL-GYSWTDS-APAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHD 197 (346)
T ss_pred HhCCCeEeEEEeeccCccccccccc-ccccccc-cCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcC
Confidence 79999999999999965211 000 0000000 001247899999999999999999999999999887765432 2
Q ss_pred -CCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccCCCCCCCCCCCC-----------CCC-------------hHH
Q 039732 76 -IPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQ-----------VMN-------------NEA 128 (214)
Q Consensus 76 -~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~-----------~~~-------------~~~ 128 (214)
..+.++|++||++++. .+++++|+++||++++|+||++ |+|+++.. .+. .+.
T Consensus 198 ~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (346)
T PRK10625 198 LPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAA 276 (346)
T ss_pred CCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHH
Confidence 3468899999999875 5799999999999999999998 99986421 010 257
Q ss_pred HHHHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCC
Q 039732 129 LKQIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQ 189 (214)
Q Consensus 129 l~~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 189 (214)
+.++|+++|+|++|+|++|++++| +++|+|+++++||++|+++.+++|+++++++|+++..
T Consensus 277 l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 277 YVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 888999999999999999999998 5689999999999999999999999999999999865
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=9.6e-36 Score=247.49 Aligned_cols=171 Identities=39% Similarity=0.685 Sum_probs=146.1
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||||||||+|++|+|+.... ...++|++|++|+++||||+||+|||+++.++.+.....++|++
T Consensus 94 ~L~~d~iDl~~lH~~~~~~~----------------~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 157 (283)
T PF00248_consen 94 RLGTDYIDLLLLHWPDPSED----------------ALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDV 157 (283)
T ss_dssp HHTSSSEEEEEESSSSTTSS----------------HHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESE
T ss_pred cccccchhcccccccccccc----------------ccchhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 68999999999999986542 27999999999999999999999999999999997777789999
Q ss_pred eecccCccc--chHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCC--------------CChHHHHHHHHHhCCCHHHHH
Q 039732 81 NQVEMNPAW--QQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQV--------------MNNEALKQIADAHGKTVAQVC 144 (214)
Q Consensus 81 ~q~~~~~~~--~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~--------------~~~~~l~~~a~~~~~s~~q~a 144 (214)
+|++||++. ...+++++|+++||++++|+|+++ |+|++.... ...+.+.++++++|+|++|+|
T Consensus 158 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~a 236 (283)
T PF00248_consen 158 VQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQLA 236 (283)
T ss_dssp EEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhhhhhhhhhhcccccchhh
Confidence 999999993 348999999999999999999998 999754321 345789999999999999999
Q ss_pred HHHHhhcC--cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccC
Q 039732 145 LRWIIEQG--AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIP 188 (214)
Q Consensus 145 l~~~l~~~--~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 188 (214)
++|+++++ .++|+|+++++|+++|+++.+++||+++++.|+++.
T Consensus 237 l~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 237 LRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999876 999999999999999999999999999999999863
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2e-34 Score=239.87 Aligned_cols=170 Identities=42% Similarity=0.676 Sum_probs=153.0
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
|||+||||+|+||+|+.... ...++|++|+++|++||||+||+|+|+++.+.++++.+..+|++
T Consensus 105 ~L~~~~iDl~~lh~~~~~~~----------------~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 168 (285)
T cd06660 105 RLGTDYIDLYLLHWPDPDTP----------------DIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAV 168 (285)
T ss_pred HhCCCceeEEEecCCCCCCC----------------CHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceE
Confidence 69999999999999975432 27999999999999999999999999999999999987678999
Q ss_pred eecccCcccchH--HHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCC-------hHHHHHHHHHhCCCHHHHHHHHHhhc
Q 039732 81 NQVEMNPAWQQR--QLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMN-------NEALKQIADAHGKTVAQVCLRWIIEQ 151 (214)
Q Consensus 81 ~q~~~~~~~~~~--~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~-------~~~l~~~a~~~~~s~~q~al~~~l~~ 151 (214)
+|++||++++.. +++++|+++||++++|+||++ |.+++...... ...+..++++++.+++|+|++|++++
T Consensus 169 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~ 247 (285)
T cd06660 169 NQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQ 247 (285)
T ss_pred EecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 999999999885 599999999999999999998 98875543221 36788999999999999999999999
Q ss_pred C--cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhcc
Q 039732 152 G--AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQI 187 (214)
Q Consensus 152 ~--~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 187 (214)
| +++|+|+++++|+++|+++...+|++++++.|++.
T Consensus 248 p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 248 PGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred CCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 6 88999999999999999999889999999999763
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-33 Score=236.18 Aligned_cols=168 Identities=21% Similarity=0.319 Sum_probs=144.8
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||||||||+|++|++.... .|. .....++|++|++|+++||||+||+|||+++.++++.+.. .+++
T Consensus 118 rL~td~iDl~~~H~~~~~h------~p~------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~ 183 (290)
T PRK10376 118 NLGLDVLDVVNLRLMGDGH------GPA------EGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVC 183 (290)
T ss_pred HhCCCeEEEEEEeccCCCC------CCC------CCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEE
Confidence 7999999999999963110 010 1237899999999999999999999999999999988876 4689
Q ss_pred eecccCcccch-HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC--cEEee
Q 039732 81 NQVEMNPAWQQ-RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG--AIVVA 157 (214)
Q Consensus 81 ~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl~ 157 (214)
+|++||++++. .+++++|+++||++++|+||++ +. ....+.+.++|+++++|++|+|++|+++++ +++|+
T Consensus 184 ~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~------~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~ 256 (290)
T PRK10376 184 VQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT------PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIP 256 (290)
T ss_pred EecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC------hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEee
Confidence 99999999875 6799999999999999999975 31 123578999999999999999999999874 77899
Q ss_pred CCCCHHHHHHhhccccccCCHHHHHHHhccCC
Q 039732 158 KSFNKERLKENLDIFDWALTDHDYDKINQIPQ 189 (214)
Q Consensus 158 g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 189 (214)
|++|++|+++|+++.+++|++++++.|+++.+
T Consensus 257 G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 257 GTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999998754
No 13
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.2e-33 Score=238.59 Aligned_cols=175 Identities=17% Similarity=0.199 Sum_probs=144.8
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC---CC
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST---IP 77 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~---~~ 77 (214)
||||||||+|++|+|+...+ ....+++|++|++|+++||||+||+|||+++.+..+..... +.
T Consensus 107 rL~~d~iDl~~lH~~~~~~~--------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~ 172 (314)
T PLN02587 107 RLQLDYVDILHCHDIEFGSL--------------DQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVD 172 (314)
T ss_pred HhCCCCeeEEEecCCCCcch--------------hhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCC
Confidence 69999999999999964321 11257899999999999999999999999988877766432 33
Q ss_pred CeeeecccCcccch-HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCC-C--C-------hHHHHHHHHHhCCCHHHHHHH
Q 039732 78 PSVNQVEMNPAWQQ-RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQV-M--N-------NEALKQIADAHGKTVAQVCLR 146 (214)
Q Consensus 78 ~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~-~--~-------~~~l~~~a~~~~~s~~q~al~ 146 (214)
+.++|+.||+.++. .+++++|+++||++++|+||++ |+|+++... . . ...+.++|+++++|++|+|++
T Consensus 173 ~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~ 251 (314)
T PLN02587 173 VILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWHPAPPELKSACAAAATHCKEKGKNISKLALQ 251 (314)
T ss_pred eEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44567888887754 6899999999999999999998 999875311 0 1 134678999999999999999
Q ss_pred HHhhcC--cEEeeCCCCHHHHHHhhcccc----ccCCHHHHHHHhccCCC
Q 039732 147 WIIEQG--AIVVAKSFNKERLKENLDIFD----WALTDHDYDKINQIPQH 190 (214)
Q Consensus 147 ~~l~~~--~~vl~g~~~~~~l~enl~a~~----~~L~~~~~~~l~~~~~~ 190 (214)
|++++| +++|+|+++++||++|+++.+ .+|+++++++|+++...
T Consensus 252 ~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 252 YSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred HHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 999998 678999999999999999975 37999999999988764
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.4e-33 Score=235.77 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=141.0
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||||||||+|++|+|+.... ....++|++|++++++||||+||+|||+++.+..+... .+|++
T Consensus 98 rLg~d~iDl~~lH~~~~~~~---------------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~--~~~~~ 160 (292)
T PRK14863 98 RMGVERADAILVHSPTELFG---------------PHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARR--FKPDI 160 (292)
T ss_pred HhCCCccCeEEEeCchhhcC---------------cchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhc--CCCCE
Confidence 79999999999999964211 01367899999999999999999999999998887654 37899
Q ss_pred eecccCcccch---HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCC---------CChHHHHHHHHHhCCCHHHHHHHHH
Q 039732 81 NQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQV---------MNNEALKQIADAHGKTVAQVCLRWI 148 (214)
Q Consensus 81 ~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~---------~~~~~l~~~a~~~~~s~~q~al~~~ 148 (214)
+|++||+++++ .+++++|+++||++++|+||++ |+|++.... .....+.+++++.++|++|+|++|+
T Consensus 161 ~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~ 239 (292)
T PRK14863 161 LQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFA 239 (292)
T ss_pred EEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999986 3599999999999999999998 999754211 1124566678888999999999999
Q ss_pred hhcC--cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhc
Q 039732 149 IEQG--AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQ 186 (214)
Q Consensus 149 l~~~--~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~ 186 (214)
+++| +++|+|+++++||++|+++.+.++++..+++|..
T Consensus 240 l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 240 LSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred HhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 9998 7889999999999999999888888877766643
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.3e-33 Score=219.40 Aligned_cols=173 Identities=25% Similarity=0.427 Sum_probs=154.1
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||+|||+|++++|+|++... .+|+-+++..|++.||||+.|||||++.+++-+.+....+..+
T Consensus 115 ~L~tDylD~LLiHRPDpLmd-----------------~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~Lvt 177 (298)
T COG4989 115 NLKTDYLDLLLIHRPDPLMD-----------------AEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVT 177 (298)
T ss_pred HhccchhhhhhccCCcccCC-----------------HHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhh
Confidence 79999999999999987543 8999999999999999999999999999999888888777799
Q ss_pred eecccCcccch---HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCC-ChHHHHHHHHHhC-CCHHHHHHHHHhhcC--c
Q 039732 81 NQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVM-NNEALKQIADAHG-KTVAQVCLRWIIEQG--A 153 (214)
Q Consensus 81 ~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~-~~~~l~~~a~~~~-~s~~q~al~~~l~~~--~ 153 (214)
+|++.|+++.. .+.+++|+++.|.+++||||+++|++++..... -..++..+|.++| .|..+++++|++.+| .
T Consensus 178 NQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~ 257 (298)
T COG4989 178 NQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKP 257 (298)
T ss_pred cceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcc
Confidence 99999998876 679999999999999999999845555432221 2478999999999 799999999999999 7
Q ss_pred EEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCCC
Q 039732 154 IVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQH 190 (214)
Q Consensus 154 ~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 190 (214)
.+|+|+.++++|++.+++.++.||.+++-+|-.+...
T Consensus 258 ~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 258 QPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred cceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 8899999999999999999999999999999877643
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.94 E-value=5.6e-27 Score=194.80 Aligned_cols=168 Identities=23% Similarity=0.322 Sum_probs=141.2
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHhcCCCCCe
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNF-SSKKIEALLAFSTIPPS 79 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~-~~~~l~~~~~~~~~~~~ 79 (214)
||||||+|+|++|......- + .....++++.++++|++||||++|+|.| +++.+.++++... ++
T Consensus 105 kl~~Dy~D~yliH~l~~e~~-~------------k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~--~d 169 (391)
T COG1453 105 KLGTDYIDYYLIHGLNTETW-E------------KIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYP--WD 169 (391)
T ss_pred HhCCchhhhhhhccccHHHH-H------------HHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhcCC--cc
Confidence 69999999999999865221 1 1112347999999999999999999998 5688899999884 79
Q ss_pred eeecccCcccch----HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhC--CCHHHHHHHHHhhcC-
Q 039732 80 VNQVEMNPAWQQ----RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHG--KTVAQVCLRWIIEQG- 152 (214)
Q Consensus 80 ~~q~~~~~~~~~----~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~--~s~~q~al~~~l~~~- 152 (214)
++|++||.++.. .+.+++|.++|++|+.|+|+.+ |-|..+ -.+++.+++++++ .||+.+|+||++++|
T Consensus 170 fvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~----vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~ 244 (391)
T COG1453 170 FVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYN----VPEKLEELCRPASPKRSPAEWALRYLLSHPE 244 (391)
T ss_pred eEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccC----CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCC
Confidence 999999998876 3789999999999999999998 655432 2378999999976 689999999999999
Q ss_pred -cEEeeCCCCHHHHHHhhccccc--c-CCHHHHHHHhccC
Q 039732 153 -AIVVAKSFNKERLKENLDIFDW--A-LTDHDYDKINQIP 188 (214)
Q Consensus 153 -~~vl~g~~~~~~l~enl~a~~~--~-L~~~~~~~l~~~~ 188 (214)
+++++|+++++|++||+...+. + ||+++.+-|.++.
T Consensus 245 V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~ 284 (391)
T COG1453 245 VTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVE 284 (391)
T ss_pred eEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHH
Confidence 8899999999999999998763 4 9998888777664
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.92 E-value=4.1e-24 Score=170.84 Aligned_cols=164 Identities=19% Similarity=0.160 Sum_probs=134.3
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
||++||+|++|+|+.+..... ....-|++.+|+++|++||||+||||+++.+.+.++++...-..++
T Consensus 132 rLqldyvDilqiHDvefap~l-------------d~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dv 198 (342)
T KOG1576|consen 132 RLQLDYVDILQIHDVEFAPNL-------------DIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDV 198 (342)
T ss_pred HhCCceeEEEEeecccccccc-------------cHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceee
Confidence 799999999999999865321 1337899999999999999999999999999999999876545566
Q ss_pred ee--cccCcccch-HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCC---h-------HHHHHHHHHhCCCHHHHHHHH
Q 039732 81 NQ--VEMNPAWQQ-RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMN---N-------EALKQIADAHGKTVAQVCLRW 147 (214)
Q Consensus 81 ~q--~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~---~-------~~l~~~a~~~~~s~~q~al~~ 147 (214)
+- ++|++.+.. -..+++.++.|++|+.-++++. |+|+..++... + .+-.+.|++.+++.+.+|++|
T Consensus 199 vlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Y 277 (342)
T KOG1576|consen 199 VLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYY 277 (342)
T ss_pred ehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 66 444443333 4567888899999999999997 99987665432 2 344556778899999999999
Q ss_pred HhhcC--cEEeeCCCCHHHHHHhhccccccCCH
Q 039732 148 IIEQG--AIVVAKSFNKERLKENLDIFDWALTD 178 (214)
Q Consensus 148 ~l~~~--~~vl~g~~~~~~l~enl~a~~~~L~~ 178 (214)
+++.+ +++++|++|.++++.|+++....||.
T Consensus 278 am~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 278 AMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred HHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 99988 99999999999999999987667877
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.60 E-value=1.3e-07 Score=75.37 Aligned_cols=75 Identities=25% Similarity=0.433 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch-HHHHHHHHhCCCeEEEeccC
Q 039732 37 DYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l 111 (214)
...+.|+.|++++.+|||..||+|.++..+++++++.+.++|..+|+...-+..- .++.++|.+++|.+...+--
T Consensus 154 ~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 154 SLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 3568999999999999999999999999999999999999999999999887764 89999999999999987654
No 19
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=91.81 E-value=2.8 Score=34.49 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=71.9
Q ss_pred HHHHHHcCCccEEEe-cCCCHHHHHHHHhcCCCCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccCCCCCCCCCCC
Q 039732 45 MEECQRLGLTKFIGV-SNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPLGAAGSSWGTN 121 (214)
Q Consensus 45 l~~l~~~Gkir~iGi-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~ 121 (214)
|.+-.++|+. .+|+ .......+.+++..++.++.++-.+.+.++.+ ..++..|+..|+..+.+-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444455875 3443 34444456666677777788888888888776 6789999999999999877654
Q ss_pred CCCChHHHHHHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhcccccc
Q 039732 122 QVMNNEALKQIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDWA 175 (214)
Q Consensus 122 ~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~~ 175 (214)
+ ..++.+|..| .+++|-..|.+++++.+++..++
T Consensus 81 ------------------~--~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kyp 116 (256)
T PRK10558 81 ------------------P--VIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYP 116 (256)
T ss_pred ------------------H--HHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCC
Confidence 1 3456667777 66788888888888888777663
No 20
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.13 E-value=6 Score=32.83 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=72.1
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccCCCCCCCCCCCC
Q 039732 45 MEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQ 122 (214)
Q Consensus 45 l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~ 122 (214)
|.+..++|+.-.-.........+.+++..++.++.++-.+.+.++.+ ..++..++..|+..+.+.|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 33444557764333344433455556666777778888888887776 6788899999999888877543
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhcccccc
Q 039732 123 VMNNEALKQIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDWA 175 (214)
Q Consensus 123 ~~~~~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~~ 175 (214)
+ ..++.+|..| .+++|-..|.++.++.+++..++
T Consensus 80 -----------------~--~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 80 -----------------K--PLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYP 115 (267)
T ss_pred -----------------H--HHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCC
Confidence 1 3556778877 67788888888888888887764
No 21
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=89.94 E-value=5.5 Score=32.66 Aligned_cols=99 Identities=10% Similarity=0.000 Sum_probs=67.9
Q ss_pred HHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCCh
Q 039732 49 QRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNN 126 (214)
Q Consensus 49 ~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~ 126 (214)
.++|+...-..++.....+.+++..++.++.++-++.+.++.+ ..++..++..|+..+.+-|-..
T Consensus 7 l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------- 73 (249)
T TIGR03239 7 LLARETLIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------- 73 (249)
T ss_pred HHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-------------
Confidence 3446653322334444455566666777788888888888776 6788889999999988876653
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhcccccc
Q 039732 127 EALKQIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDWA 175 (214)
Q Consensus 127 ~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~~ 175 (214)
+ ..++.+|..| .+++|-..|.++.++.+++..++
T Consensus 74 -------------~--~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kyp 109 (249)
T TIGR03239 74 -------------P--VIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYP 109 (249)
T ss_pred -------------H--HHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCC
Confidence 1 2445566666 66778888888888888776653
No 22
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=85.10 E-value=17 Score=29.73 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=65.1
Q ss_pred HHHHcCCccEEEe--cCCCHHHHHHHHhcCCCCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccCCCCCCCCCCCC
Q 039732 47 ECQRLGLTKFIGV--SNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQ 122 (214)
Q Consensus 47 ~l~~~Gkir~iGi--S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~ 122 (214)
+..++|+. .+|+ +..++..++. +...+.++.++-++.+..+.+ ..++..++..|..++.+-|-..
T Consensus 5 ~~l~~g~~-~~g~~~~~~~p~~~e~-~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~--------- 73 (249)
T TIGR02311 5 QALKEGQP-QIGLWLGLADPYAAEI-CAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD--------- 73 (249)
T ss_pred HHHHCCCc-eEEEEEeCCCcHHHHH-HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC---------
Confidence 44456875 3443 3344544444 455666777777787776554 4577777788888888755432
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHHHhhcC--cEEeeCCCCHHHHHHhhccccc
Q 039732 123 VMNNEALKQIADAHGKTVAQVCLRWIIEQG--AIVVAKSFNKERLKENLDIFDW 174 (214)
Q Consensus 123 ~~~~~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~~~ 174 (214)
+ ..++.++..| .+++|-..|++++++.+++..+
T Consensus 74 -----------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -----------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -----------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 2 1467777777 6788888899998888888765
No 23
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=82.07 E-value=3.1 Score=37.29 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeee--ecccC
Q 039732 37 DYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVN--QVEMN 86 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~--q~~~~ 86 (214)
+.+++++..++.+++|+...||+-+.-.+.+.++++.. +.|+++ |.+.|
T Consensus 209 ~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~-i~pDlvtDQTSaH 259 (545)
T TIGR01228 209 SLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRG-VVPDVVTDQTSAH 259 (545)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcC-CCCCCcCCCCccc
Confidence 38999999999999999999999999999999998863 455544 76654
No 24
>PRK05414 urocanate hydratase; Provisional
Probab=81.75 E-value=3.4 Score=37.19 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeee--ecccC
Q 039732 37 DYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVN--QVEMN 86 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~--q~~~~ 86 (214)
+.+++++...+.+++|+...||+-+.-.+.+.++++.. +.|+++ |.+.|
T Consensus 218 ~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~-i~pDlvtDQTSaH 268 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRG-IRPDLVTDQTSAH 268 (556)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcC-CCCCccCcCcccc
Confidence 38999999999999999999999999899999998874 455544 76654
No 25
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=79.55 E-value=21 Score=28.72 Aligned_cols=115 Identities=6% Similarity=0.081 Sum_probs=69.5
Q ss_pred CHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCC----
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGK---- 138 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~---- 138 (214)
+...++...+..+++....+++...-..-.++.+.+++.|+..++.+.+.. . .....+..+|.+.|+
T Consensus 46 ~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s------~---~qr~~~e~vc~~~gl~~~~ 116 (222)
T TIGR00289 46 NLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIES------N---YQKSRIDKVCRELGLKSIA 116 (222)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcccc------H---HHHHHHHHHHHHcCCEEec
Confidence 345566666667765544444322111115677778888988888766654 1 134677788888765
Q ss_pred -----CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCC
Q 039732 139 -----TVAQVCLRWIIEQG-AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQHR 191 (214)
Q Consensus 139 -----s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~ 191 (214)
+..++ +.++ ..+ .++|+.+.+ ..|.+. -++-.++.+.++.|.++.+++
T Consensus 117 PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~-~gL~~~--~LGr~id~~~~~~L~~l~~~~ 170 (222)
T TIGR00289 117 PLWHADPEKL-MYEV-AEKFEVIIVSVSA-MGLDES--WLGRRIDKECIDDLKRLNEKY 170 (222)
T ss_pred cccCCCHHHH-HHHH-HcCCeEEEEEEcc-CCCChH--HcCCccCHHHHHHHHHHHhhc
Confidence 45555 4654 777 555555543 234422 244579988999888876554
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=77.21 E-value=56 Score=29.54 Aligned_cols=138 Identities=10% Similarity=0.097 Sum_probs=80.1
Q ss_pred ccccCCCcC---CCCCCCHHHHHHHHHHHHHcCCccEEEecC----CCHHHHHHHHhcC---C-CCCe-eeecccCcccc
Q 039732 23 KLQSLIPKE---DLVPLDYKGVWEAMEECQRLGLTKFIGVSN----FSSKKIEALLAFS---T-IPPS-VNQVEMNPAWQ 90 (214)
Q Consensus 23 ~~~~~~~~~---~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~----~~~~~l~~~~~~~---~-~~~~-~~q~~~~~~~~ 90 (214)
.|+|+.... .....+.+.+++.++.++++..++.+-++. .+...+.++++.. + .... ..+.+.+....
T Consensus 206 ~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~ 285 (497)
T TIGR02026 206 TCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR 285 (497)
T ss_pred CCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC
Confidence 356764332 223456789999999999876688887773 2444444444432 1 2111 13344444444
Q ss_pred hHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC----cEEeeC--CCCHHH
Q 039732 91 QRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG----AIVVAK--SFNKER 164 (214)
Q Consensus 91 ~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~----~~vl~g--~~~~~~ 164 (214)
..++++..++.|+..+..+.=.+ ..+.+..+.+.+...-..-+++.+.+.| ...|+| ..+.+.
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~ 354 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDET 354 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHH
Confidence 57899999999987766533332 2244554444333333444666677776 344666 357778
Q ss_pred HHHhhcc
Q 039732 165 LKENLDI 171 (214)
Q Consensus 165 l~enl~a 171 (214)
+++.++-
T Consensus 355 ~~~t~~~ 361 (497)
T TIGR02026 355 FEETYRQ 361 (497)
T ss_pred HHHHHHH
Confidence 8777653
No 27
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=77.14 E-value=40 Score=27.80 Aligned_cols=139 Identities=14% Similarity=0.082 Sum_probs=72.4
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHhcCCCC
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFS---SKKIEALLAFSTIP 77 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~---~~~l~~~~~~~~~~ 77 (214)
++|+|+|++-+.........+. ......+.++.+.++.+ +..+..+++... .+.+..+.+ .+++
T Consensus 31 ~~GVd~IEvG~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~-~gv~ 97 (266)
T cd07944 31 AAGIDYVEIGYRSSPEKEFKGK-----------SAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG-SVVD 97 (266)
T ss_pred HCCCCEEEeecCCCCccccCCC-----------ccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc-CCcC
Confidence 4688888887654432111100 01223566666666553 346666666443 455555533 3332
Q ss_pred CeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC--cEE
Q 039732 78 PSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG--AIV 155 (214)
Q Consensus 78 ~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~--~~v 155 (214)
..-+.+..+.+..-.+.+++++++|..+...-..+. + ...+.+.+++++ +.+.+ ...
T Consensus 98 ~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~--------~~~~~~~~~~~~------------~~~~g~~~i~ 156 (266)
T cd07944 98 MIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS-G--------YSDEELLELLEL------------VNEIKPDVFY 156 (266)
T ss_pred EEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec-C--------CCHHHHHHHHHH------------HHhCCCCEEE
Confidence 222333344444447899999999988765433332 2 122333333222 12223 222
Q ss_pred ---eeCCCCHHHHHHhhcccc
Q 039732 156 ---VAKSFNKERLKENLDIFD 173 (214)
Q Consensus 156 ---l~g~~~~~~l~enl~a~~ 173 (214)
-.|.-+|+++.+.+..+.
T Consensus 157 l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 157 IVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 348888998888877654
No 28
>PRK07094 biotin synthase; Provisional
Probab=76.96 E-value=42 Score=28.24 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEecc
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSN-----FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 110 (214)
.+.+++++..+.+++.| ++.+.+++ +..+.+.++++...-.+. +.+.+++.....+.++..++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 46889999999988876 67776652 245666666654432111 122334433447788999999988776433
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHH--HHHHHhhcC----cEEeeCC--CCHHHHHHhhcc
Q 039732 111 LGAAGSSWGTNQVMNNEALKQIADAHGKTVAQV--CLRWIIEQG----AIVVAKS--FNKERLKENLDI 171 (214)
Q Consensus 111 l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~--al~~~l~~~----~~vl~g~--~~~~~l~enl~a 171 (214)
=.. ....+..+.+ +.+..+. +++++...+ ...++|. .+.+++.+.+..
T Consensus 148 Es~-----------~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 148 ETA-----------DKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred ccC-----------CHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 221 2233333432 2333332 566666665 5567774 577777776654
No 29
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=76.83 E-value=17 Score=30.32 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=71.3
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCC--eeeecccCcc----cchHHHHHHHHhCCCeEEEeccCCCCCCCC
Q 039732 45 MEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPP--SVNQVEMNPA----WQQRQLREFCKSKSIIVTAFSPLGAAGSSW 118 (214)
Q Consensus 45 l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~--~~~q~~~~~~----~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~ 118 (214)
++.+....++..+-=++.+.+...++++...-++ .-..+.=.+| +++..+.+++++-++-++.-+.-.
T Consensus 147 ~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nS------ 220 (280)
T TIGR00216 147 LENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNS------ 220 (280)
T ss_pred HHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCC------
Confidence 4444434555555555667777666655443111 1111212233 345678888888777666622222
Q ss_pred CCCCCCChHHHHHHHHHhCC------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhh
Q 039732 119 GTNQVMNNEALKQIADAHGK------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENL 169 (214)
Q Consensus 119 ~~~~~~~~~~l~~~a~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl 169 (214)
....+|.++|++.+. +..++-..|+-... .-+..|+|+|+.+-+.+
T Consensus 221 -----sNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 221 -----SNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred -----chHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 244789999999873 68888889988766 77889999999886654
No 30
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=76.80 E-value=38 Score=27.36 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcc----------------cchHHHHHHHHhC
Q 039732 39 KGVWEAMEECQRLG-LTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPA----------------WQQRQLREFCKSK 101 (214)
Q Consensus 39 ~e~~~~l~~l~~~G-kir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~----------------~~~~~~~~~~~~~ 101 (214)
...++.+.++++.+ .++...++......++.+.+.. .+.+++.+..- ..-...++++++.
T Consensus 51 ~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g---~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 127 (265)
T cd03174 51 EDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG---VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA 127 (265)
T ss_pred CCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC
Confidence 45567777777777 5666676655556666666543 24444443322 1114667888888
Q ss_pred CCeEEEec
Q 039732 102 SIIVTAFS 109 (214)
Q Consensus 102 gi~vi~~~ 109 (214)
|+.+...-
T Consensus 128 G~~v~~~~ 135 (265)
T cd03174 128 GLEVEGSL 135 (265)
T ss_pred CCeEEEEE
Confidence 88776654
No 31
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=76.41 E-value=1.8 Score=37.51 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=34.6
Q ss_pred cCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcc-cc-hHHHHHHHHhCCCe
Q 039732 51 LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPA-WQ-QRQLREFCKSKSII 104 (214)
Q Consensus 51 ~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~-~~-~~~~~~~~~~~gi~ 104 (214)
-|+|||+||--++.+.+.++....+- -+..+....++ ++ +..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 49999999999999999988776541 12222222222 22 25677777777765
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=76.40 E-value=15 Score=28.85 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch-------HHHHHHHHhCCCeEEEeccCC
Q 039732 40 GVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-------RQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 40 e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~vi~~~~l~ 112 (214)
..-+.|+++.+=|+-.-+++.||.-+..+.-+-..+-.|..-..+|+-.+.. .+..++|++.|+.|.-...+.
T Consensus 90 ~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 90 RPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred HHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 3455677888889988899999988887766664444567777787765543 789999999999999999988
Q ss_pred C
Q 039732 113 A 113 (214)
Q Consensus 113 ~ 113 (214)
+
T Consensus 170 ~ 170 (193)
T PF07021_consen 170 G 170 (193)
T ss_pred C
Confidence 6
No 33
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=75.54 E-value=18 Score=30.29 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=70.4
Q ss_pred CccEEEecCCCHHHHHHHHhcCCCCCeeeeccc-C-cc----cchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCCh
Q 039732 53 LTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEM-N-PA----WQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNN 126 (214)
Q Consensus 53 kir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~-~-~~----~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~ 126 (214)
++-++-=++-+.+...++++..+-++..+|.+. | +| +++..+.+.+.+-++-++.-++-.+ ..
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSS-----------Ns 227 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSS-----------NS 227 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCc-----------cH
Confidence 444444445556665555555442333333322 2 22 3456678888887887777555443 45
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhhc
Q 039732 127 EALKQIADAHGK------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENLD 170 (214)
Q Consensus 127 ~~l~~~a~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl~ 170 (214)
.+|.++|++.|. ++.++-..|+.... ..+-.|+|+|+.|-+++-
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHH
Confidence 899999999986 57788888888866 777889999999887763
No 34
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=75.00 E-value=32 Score=30.12 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=76.8
Q ss_pred HHHHHHcCCccEEEecCCCHHHH-HHHHhcCCCCC--eeeecccCcccchHHHHHHHHhCCCeE---EEeccCCCCCCCC
Q 039732 45 MEECQRLGLTKFIGVSNFSSKKI-EALLAFSTIPP--SVNQVEMNPAWQQRQLREFCKSKSIIV---TAFSPLGAAGSSW 118 (214)
Q Consensus 45 l~~l~~~Gkir~iGiS~~~~~~l-~~~~~~~~~~~--~~~q~~~~~~~~~~~~~~~~~~~gi~v---i~~~~l~~~G~L~ 118 (214)
=.++.++=.||.+|+=+.+-.-+ .++.+..+ +| +...+.+|+-+... -.|-++|..+ |++.||. |+.-
T Consensus 163 P~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~-k~~~~l~~I~~HLGNGAS---icAiknGkSvDTSMGfTPLe--Gl~M 236 (396)
T COG0282 163 PYELYEKYGIRRYGFHGTSHKYVSQRAAEILG-KPLEDLNLITCHLGNGAS---ICAIKNGKSVDTSMGFTPLE--GLMM 236 (396)
T ss_pred CHHHHHhcCceecccCccchHHHHHHHHHHhC-CCccccCEEEEEecCchh---hhhhhCCeeeccCCCCCccc--ceec
Confidence 35677888999999987654433 34444443 33 67777777765532 2344667666 7888997 4443
Q ss_pred C-CCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCCC-HHHHHHhhcc
Q 039732 119 G-TNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSFN-KERLKENLDI 171 (214)
Q Consensus 119 ~-~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~~-~~~l~enl~a 171 (214)
| +........+.-+++..|+|..|+.---.-.-|..-|.|.++ ...++++.+-
T Consensus 237 GTRsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~ 291 (396)
T COG0282 237 GTRSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAE 291 (396)
T ss_pred cCCCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHhcc
Confidence 3 344556677888899999999986544222333555667444 7777766654
No 35
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=74.91 E-value=39 Score=27.25 Aligned_cols=116 Identities=9% Similarity=0.128 Sum_probs=66.2
Q ss_pred CHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCC----
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGK---- 138 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~---- 138 (214)
+.+.++...+..+++...+......-.-..++.+..++.|+..++++.+.. . .....+..+|.+.|+
T Consensus 46 ~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s------~---~qr~~~e~v~~~lgl~~~~ 116 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIYS------E---YQKTRIERVCRELGLKSFA 116 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCccc------H---HHHHHHHHHHHhcCCEEec
Confidence 345555666666664332222211111125677888888988888766654 1 134677778888764
Q ss_pred -----CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCC
Q 039732 139 -----TVAQVCLRWIIEQG-AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQHR 191 (214)
Q Consensus 139 -----s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~ 191 (214)
+..+++-.++ ..+ .++|+++.. ..|.+ .-++..++.+.++.|.++.+++
T Consensus 117 PLW~~~~~~ll~e~i-~~G~~aiIv~v~a-~gL~~--~~LGr~i~~e~i~~L~~~~~~~ 171 (223)
T TIGR00290 117 PLWHRDPEKLMEEFV-EEKFEARIIAVAA-EGLDE--SWLGRRIDRKMIDELKKLNEKY 171 (223)
T ss_pred cccCCCHHHHHHHHH-HcCCeEEEEEEec-CCCCh--HHcCCcccHHHHHHHHHHHhcc
Confidence 4455444444 666 445544443 23432 2245578888898888876543
No 36
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=74.89 E-value=25 Score=29.38 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=67.8
Q ss_pred CCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcc----cchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChH
Q 039732 52 GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPA----WQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNE 127 (214)
Q Consensus 52 Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~----~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~ 127 (214)
.++..+-=++.+.+...++++...-++.-+.+.=.+| +++..+.+++++-++-++.-+.-. ..-.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----------sNT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHS-----------SNTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCC-----------ccHH
Confidence 4444444446677776666665431221112222222 334678888888887776632222 2347
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhh
Q 039732 128 ALKQIADAHGK------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENL 169 (214)
Q Consensus 128 ~l~~~a~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl 169 (214)
+|.++|++.+. ++.++-..|+.... .-+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 89999999874 67888888998776 77889999999876654
No 37
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=73.40 E-value=30 Score=29.25 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=68.6
Q ss_pred CCccEEEecCCCHHHHHHHHhcCCCCCeeeec-cc-Cccc----chHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCC
Q 039732 52 GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQV-EM-NPAW----QQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMN 125 (214)
Q Consensus 52 Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~-~~-~~~~----~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~ 125 (214)
.++..+-=++.+.+...++++...-++.-+-+ .+ .+|+ ++..+.+++++.++-++.-+.-. ..
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----------sN 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS-----------SN 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC-----------cc
Confidence 45555555567777766666654311111111 11 2333 34678888888777766632222 13
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhhc
Q 039732 126 NEALKQIADAHGK------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENLD 170 (214)
Q Consensus 126 ~~~l~~~a~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl~ 170 (214)
-.+|.++|++.+. +..++-..|+.... .-+..|+|+|+.+-+.+-
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 4789999999873 68889899997666 778899999998766553
No 38
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=71.86 E-value=6.6 Score=35.39 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeee--ecccC
Q 039732 37 DYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVN--QVEMN 86 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~--q~~~~ 86 (214)
+.+++++...+.+++|+...||+-+.-.+.++++++.. +.|+++ |.++|
T Consensus 208 ~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~-i~pDl~tDQTS~H 258 (546)
T PF01175_consen 208 DLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERG-IIPDLVTDQTSAH 258 (546)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT----SEE---SSTT
T ss_pred CHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcC-CCCCcccCCCccc
Confidence 38999999999999999999999999899999998874 445554 77665
No 39
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=71.52 E-value=8.4 Score=32.04 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=41.6
Q ss_pred CCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCC
Q 039732 62 FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
|+...+.++++..+++..++-+.||+... ++.++|++.|+.+++.-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 45566778888888988999999966554 899999999999999989865
No 40
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=70.41 E-value=19 Score=28.54 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=41.9
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHhcCCCCCe
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVS-NFSSKKIEALLAFSTIPPS 79 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS-~~~~~~l~~~~~~~~~~~~ 79 (214)
.+|.||+=+.+.....+.. + .+....+.+.. .+.++.+||. +.+++.+.++++.. .++
T Consensus 19 ~~GaD~iGfIf~~~SpR~V-----------------~-~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~--~~d 77 (207)
T PRK13958 19 QLPIDAIGFIHYEKSKRHQ-----------------T-ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNT--SIN 77 (207)
T ss_pred HcCCCEEEEecCCCCcccC-----------------C-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhC--CCC
Confidence 3788998887544333222 2 23333333333 3568899997 78899999998877 458
Q ss_pred eeeccc
Q 039732 80 VNQVEM 85 (214)
Q Consensus 80 ~~q~~~ 85 (214)
++|+.-
T Consensus 78 ~vQLHG 83 (207)
T PRK13958 78 TIQLHG 83 (207)
T ss_pred EEEECC
Confidence 999874
No 41
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=67.92 E-value=56 Score=26.93 Aligned_cols=72 Identities=18% Similarity=0.073 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 111 (214)
.+.+...+..+++.-.+ -+-|-+++++.++++++...-.+.++-+.... .....+++.+++.|..++.+..-
T Consensus 54 ~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~ 125 (261)
T PRK07535 54 PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMD 125 (261)
T ss_pred HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecC
Confidence 34555666666554232 36777899999999999854345555444321 22367899999999999987543
No 42
>PLN02363 phosphoribosylanthranilate isomerase
Probab=67.03 E-value=24 Score=29.03 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=42.1
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHhcCCCCCe
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVS-NFSSKKIEALLAFSTIPPS 79 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS-~~~~~~l~~~~~~~~~~~~ 79 (214)
++|.|||=+.+.....+. ++ .+..+.+.+......++.+||. +.+++.+.++++.. .++
T Consensus 65 ~~GaD~iGfIf~~~SpR~-----------------Vs-~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~--~ld 124 (256)
T PLN02363 65 EAGADFIGMILWPKSKRS-----------------IS-LSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSS--DLE 124 (256)
T ss_pred HcCCCEEEEecCCCCCCc-----------------CC-HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhc--CCC
Confidence 478899888654432222 12 3344444444443346789986 78899999998877 458
Q ss_pred eeecccC
Q 039732 80 VNQVEMN 86 (214)
Q Consensus 80 ~~q~~~~ 86 (214)
++|+.-.
T Consensus 125 ~VQLHG~ 131 (256)
T PLN02363 125 LVQLHGN 131 (256)
T ss_pred EEEECCC
Confidence 9998743
No 43
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=65.64 E-value=63 Score=25.26 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=66.8
Q ss_pred CHHHHHHHHhcCCCCCeeeecccCcccchHHH---HHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCC-
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQL---REFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGK- 138 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~---~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~- 138 (214)
+.+.+++..+..+++...+.+..+.-.....+ +...++.|+..++.+.+.. ......+..+|.+.|+
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~s---------d~~~~~~e~~~~~~gl~ 116 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAILS---------EYQRTRVERVCERLGLE 116 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCE
Confidence 34556666677777655554433211111233 3333333788888766654 1235677888888765
Q ss_pred --------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCCCCCCCcccCCCCCcccc
Q 039732 139 --------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQHRMMPRDEYITPHGPFKTL 208 (214)
Q Consensus 139 --------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (214)
+..+ .++=.+..+ .++|+.+.. ..|.+ +-++..++.+.++. .++..++ +=......+.|+|+
T Consensus 117 ~~~PLW~~~~~~-ll~e~~~~g~~~~iv~v~~-~~L~~--~~lG~~~~~~~~~~-~~~~~~~---g~~~~GE~GEyhT~ 187 (194)
T cd01994 117 PLAPLWGRDQEE-LLREMIEAGFKAIIIKVAA-EGLDE--SWLGREIDEMFIEL-LELNEKY---GVDPCGEGGEYETL 187 (194)
T ss_pred EEecccCCCHHH-HHHHHHHcCCeEEEEEecc-CCCCH--HHCCCCccHhhHHH-HHhhhhc---CcCccCCCceeeEE
Confidence 3444 444445667 445555443 33443 22345777777654 3333322 21223344667764
No 44
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=64.06 E-value=26 Score=27.89 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc---hHHHHHHHHhCCCeEEEeccCCC
Q 039732 42 WEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 42 ~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
++.+.++++...+. +.+-|-++.+.+..+++.. ..+++|+..+.+.. ..++..+|+++|+.++..+.+.+
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~--~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELG--AVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC--CCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 56677777777665 4455556777776666654 24777776655432 36889999999999998766654
No 45
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=63.77 E-value=22 Score=29.78 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=63.1
Q ss_pred CCccEEEecCCCHHHHHHHHhcCCC-CCeee-ecccCccc----chHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCC
Q 039732 52 GLTKFIGVSNFSSKKIEALLAFSTI-PPSVN-QVEMNPAW----QQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMN 125 (214)
Q Consensus 52 Gkir~iGiS~~~~~~l~~~~~~~~~-~~~~~-q~~~~~~~----~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~ 125 (214)
+++-.+-=++++.+...++.+...- .+... .+.=.+|. ++..+.+++++-++-++.-+.-. ..
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S-----------sN 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS-----------SN 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------HH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC-----------cc
Confidence 4676777677887776666665431 12222 12222332 34677888887776665522221 23
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhh
Q 039732 126 NEALKQIADAHGK------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENL 169 (214)
Q Consensus 126 ~~~l~~~a~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl 169 (214)
-.+|.++|++.+. ++.++...|+-... .-+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 4789999999874 67888899988877 77899999999887765
No 46
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=63.39 E-value=28 Score=27.67 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=41.5
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHhcCCCCCe
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVS-NFSSKKIEALLAFSTIPPS 79 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS-~~~~~~l~~~~~~~~~~~~ 79 (214)
++|.||+=+.+.....+.. + .+..+.+.+.. .+++..+||. +.+++.+.++++.. .++
T Consensus 21 ~~Gad~iGfI~~~~S~R~V-----------------~-~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~--~~d 79 (210)
T PRK01222 21 ELGADAIGFVFYPKSPRYV-----------------S-PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETV--PLD 79 (210)
T ss_pred HcCCCEEEEccCCCCCCcC-----------------C-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhc--CCC
Confidence 3788888886433322221 1 33333333332 3568999988 57889999998877 458
Q ss_pred eeecccC
Q 039732 80 VNQVEMN 86 (214)
Q Consensus 80 ~~q~~~~ 86 (214)
++|+.-+
T Consensus 80 ~vQLHg~ 86 (210)
T PRK01222 80 LLQLHGD 86 (210)
T ss_pred EEEECCC
Confidence 9998643
No 47
>PRK07945 hypothetical protein; Provisional
Probab=62.42 E-value=1e+02 Score=26.43 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC---------------CCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSN---------------FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKS 102 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~---------------~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~g 102 (214)
..+..+.|.++.+.|++..+|=-. +..+.+-+++...++...+|--... ..+...+++.|++.|
T Consensus 206 ~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~~r-~~P~~~il~~a~e~G 284 (335)
T PRK07945 206 AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRPER-RDPPTRLLRLALDAG 284 (335)
T ss_pred HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCCCC-CCChHHHHHHHHHcC
Confidence 456678888888888877777211 1223333333333433344432221 134467888888888
Q ss_pred CeEEE
Q 039732 103 IIVTA 107 (214)
Q Consensus 103 i~vi~ 107 (214)
+.++.
T Consensus 285 ~~vti 289 (335)
T PRK07945 285 CLFSI 289 (335)
T ss_pred CeEEe
Confidence 87544
No 48
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=62.27 E-value=74 Score=26.15 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEecc
Q 039732 40 GVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 40 e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 110 (214)
.+...+..+++.-.+. +.|=+++++.++++++.. ...++-+.. .....++++.++++|..++.+..
T Consensus 63 rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G--~~iINdisg--~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 63 RVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG--ADIINDVSG--GSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--CCEEEeCCC--CCCChHHHHHHHHcCCCEEEECC
Confidence 3444556666653443 677799999999999874 334443332 22226899999999999999654
No 49
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=62.26 E-value=43 Score=28.39 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccCCC
Q 039732 40 GVWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 40 e~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
+-++.+.+++++..+. +.|-|.++...+..+++..- .+++|.....+. .-.++...|+++|+.++..+.+.+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~--~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGN--VKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCC--CCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 4467788888876655 66777889999988887653 477777765533 236899999999999987655543
No 50
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=61.96 E-value=69 Score=24.39 Aligned_cols=76 Identities=16% Similarity=0.010 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc-------hHHHHHHHHhCCCeEEEecc
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ-------QRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~~~~~~~~~gi~vi~~~~ 110 (214)
.+++++...+=-+++-|+++=+.+-+.....++++...-...++-+.|+.-.. +.++.+..+++|..+.+-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 57777777776778889999998888888888888775434455556655332 26889999999999987655
Q ss_pred CCC
Q 039732 111 LGA 113 (214)
Q Consensus 111 l~~ 113 (214)
..+
T Consensus 92 alS 94 (186)
T COG1751 92 ALS 94 (186)
T ss_pred hhh
Confidence 544
No 51
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=61.96 E-value=80 Score=25.18 Aligned_cols=57 Identities=18% Similarity=0.059 Sum_probs=37.6
Q ss_pred HHHHHcCC-ccEEEec-CCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCC-CeEEE
Q 039732 46 EECQRLGL-TKFIGVS-NFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKS-IIVTA 107 (214)
Q Consensus 46 ~~l~~~Gk-ir~iGiS-~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~g-i~vi~ 107 (214)
.++.+... ++.+||. |.+.+.+.++++.. .++++|+.-.. ..+.++..++.. +.++-
T Consensus 44 ~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~--~ld~VQlHG~e---~~~~~~~l~~~~~~~v~k 103 (208)
T COG0135 44 REIASAVPKVKVVGVFVNESIEEILEIAEEL--GLDAVQLHGDE---DPEYIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHhCCCCCEEEEECCCCHHHHHHHHHhc--CCCEEEECCCC---CHHHHHHHHhhcCCceEE
Confidence 33444333 8899998 57888899998887 56899887542 245555555543 55544
No 52
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=61.24 E-value=20 Score=28.35 Aligned_cols=118 Identities=12% Similarity=0.022 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHH---HHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIE---ALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAA 114 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~---~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~ 114 (214)
.+++.+..+.|.+.| |+.+=|+.-++..++ .+.+.. |++.---=+++ ..+..+.|.+.|..++.. |-..
T Consensus 19 ~~~a~~~~~al~~gG-i~~iEiT~~t~~a~~~I~~l~~~~---p~~~vGAGTV~--~~e~a~~a~~aGA~FivS-P~~~- 90 (196)
T PF01081_consen 19 PEDAVPIAEALIEGG-IRAIEITLRTPNALEAIEALRKEF---PDLLVGAGTVL--TAEQAEAAIAAGAQFIVS-PGFD- 90 (196)
T ss_dssp GGGHHHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHH---TTSEEEEES----SHHHHHHHHHHT-SEEEE-SS---
T ss_pred HHHHHHHHHHHHHCC-CCEEEEecCCccHHHHHHHHHHHC---CCCeeEEEecc--CHHHHHHHHHcCCCEEEC-CCCC-
Confidence 456666666666666 888888765543332 232222 12110000011 245667777777777663 3221
Q ss_pred CCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCCCHHHHHHhhccc-c----cc---CC-HHHHHHHh
Q 039732 115 GSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSFNKERLKENLDIF-D----WA---LT-DHDYDKIN 185 (214)
Q Consensus 115 G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~a~-~----~~---L~-~~~~~~l~ 185 (214)
.-.++++.+++...+||+.|+.++...++.- + +| +. ..-++.|.
T Consensus 91 ---------------------------~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~ 143 (196)
T PF01081_consen 91 ---------------------------PEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALR 143 (196)
T ss_dssp ---------------------------HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHh
Confidence 1356666777778889999998888887652 2 12 33 45566666
Q ss_pred ccCCC
Q 039732 186 QIPQH 190 (214)
Q Consensus 186 ~~~~~ 190 (214)
.....
T Consensus 144 ~p~p~ 148 (196)
T PF01081_consen 144 GPFPD 148 (196)
T ss_dssp TTTTT
T ss_pred ccCCC
Confidence 55443
No 53
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=59.38 E-value=47 Score=27.64 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCC------------HHHHHHHHhcCCCCCeeeecccCcccch--HHHHHHHHhCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFS------------SKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSI 103 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~------------~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi 103 (214)
....++...+++++|++-+||=++.. .+.+..+.+.+.---+.+|+..--.... .++-+++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 34567788899999999999988653 1223444444442224445543333332 678889999987
No 54
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=57.88 E-value=14 Score=30.60 Aligned_cols=35 Identities=11% Similarity=-0.068 Sum_probs=22.6
Q ss_pred cEEeeCCCCHHHHHHhhccccc-cCCHHHHHHHhcc
Q 039732 153 AIVVAKSFNKERLKENLDIFDW-ALTDHDYDKINQI 187 (214)
Q Consensus 153 ~~vl~g~~~~~~l~enl~a~~~-~L~~~~~~~l~~~ 187 (214)
..+=.|.++++|+++..++.+. -.-.+-++.|.+.
T Consensus 208 v~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~~i~~~ 243 (265)
T COG0159 208 VLVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEEG 243 (265)
T ss_pred eEEecCcCCHHHHHHHHHhCCeEEEcHHHHHHHHhc
Confidence 4555688899999988887653 4444555555443
No 55
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=57.23 E-value=57 Score=30.64 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=68.0
Q ss_pred cCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcc----cchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCCh
Q 039732 51 LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPA----WQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNN 126 (214)
Q Consensus 51 ~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~----~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~ 126 (214)
..++..+-=++.+.+...++++...-++.-+.+.=.+| +++..+.+.|.+.++-++.-+.-. ...
T Consensus 153 ~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~S-----------sNt 221 (647)
T PRK00087 153 DKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNS-----------SNT 221 (647)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCC-----------ccH
Confidence 34555555556677766666554431111112222222 334678888888777776632222 234
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhh
Q 039732 127 EALKQIADAHGK------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENL 169 (214)
Q Consensus 127 ~~l~~~a~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl 169 (214)
.+|.++|++.+. ++.++...|+-... .-+..|+|+|+.+-+.+
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 789999998873 67888888988766 77889999999775544
No 56
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=56.19 E-value=52 Score=27.62 Aligned_cols=69 Identities=7% Similarity=-0.004 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc---hHHHHHHHHhCCCeEEEeccCC
Q 039732 42 WEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 42 ~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
++.+.++++...|. +.|=+-++...+..+++... .+++|.....+.. ..++..+|+++|+.++..+.+.
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~--~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGGA--YDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCC--CCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 55566777776665 33444577788888877653 3677776554322 2678888999999988865554
No 57
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=55.80 E-value=1.5e+02 Score=26.45 Aligned_cols=123 Identities=12% Similarity=0.075 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CccEEEec--CC--CHHHHHHHHhcC---CCCCeeeecccCcccchHHHHHHHHhCCCeE
Q 039732 34 VPLDYKGVWEAMEECQRLG-LTKFIGVS--NF--SSKKIEALLAFS---TIPPSVNQVEMNPAWQQRQLREFCKSKSIIV 105 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~G-kir~iGiS--~~--~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v 105 (214)
.....+.+++.++.+++.. .++.+-+. ++ +...+.++++.. ++.+.+ +...+ ...++++..++.|...
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~-~~~~~---~~~e~l~~l~~aG~~~ 300 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSC-NARAN---VDYETLKVMKENGLRL 300 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEE-EecCC---CCHHHHHHHHHcCCCE
Confidence 3456889999999999874 56766665 23 344444544432 222211 22222 2478899999999877
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC----cEEeeCC--CCHHHHHHhhcc
Q 039732 106 TAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG----AIVVAKS--FNKERLKENLDI 171 (214)
Q Consensus 106 i~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~----~~vl~g~--~~~~~l~enl~a 171 (214)
+..+.=.+ ..+.+..+.+.....-..-+++.+...+ ...|+|. .+.+.+++.++.
T Consensus 301 v~iGiES~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 301 LLVGYESG-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EEEcCCCC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 66543332 2345555533332223344667777776 4457774 788888888765
No 58
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=55.63 E-value=19 Score=32.11 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeee--ecccC
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVN--QVEMN 86 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~--q~~~~ 86 (214)
.+.+|+++-.++..++|+-..||+-+.-.+.+.++++.. +.|+++ |.++|
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~-~~pD~vtDQTsaH 268 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRG-IRPDLVTDQTSAH 268 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcC-CCCceeccccccc
Confidence 348999999999999999999999999899999998874 456555 66554
No 59
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=55.59 E-value=38 Score=27.66 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc---hHHHHHHHHhCCCeEEEeccCCC
Q 039732 42 WEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 42 ~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
++.+.++++.-.+. +.|=|-++...+.++++... .+++|+....+.. ...+...|+++|+.++..+.+.+
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 45566666665544 44444567777777766542 4677766554332 26778888888888887655543
No 60
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=55.52 E-value=1.1e+02 Score=24.89 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCC
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
+.+...++.+++.-.+ -+.|-+++++.++++++.. .+.++-+.. .....++++.+++.|..++.+..-+
T Consensus 62 ~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g--~~iINdis~--~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 62 ERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAG--ADIINDVSG--GRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhC--CCEEEeCCC--CCCChHHHHHHHHcCCCEEEECcCC
Confidence 4466666767665333 2788899999999999976 344544332 2222689999999999999986544
No 61
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=55.16 E-value=1.3e+02 Score=25.62 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCccE-EEecCC---CHHHHHHHHhcCCCC-CeeeecccCcccchHHHHHHHHhCCCeEEEeccC
Q 039732 38 YKGVWEAMEECQRLGLTKF-IGVSNF---SSKKIEALLAFSTIP-PSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~-iGiS~~---~~~~l~~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 111 (214)
.++..+..+...+.=.+-- |..|+. +++.++++++.++-+ |-++-... ..-..+.+.|+++|..+++.++.
T Consensus 109 ~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~---en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 109 PEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE---DNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH---HHHHHHHHHHHHhCCeEEEEcHH
Confidence 3444444444433333333 666633 789999999987633 44443331 11267999999999999998754
No 62
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=54.40 E-value=1.4e+02 Score=25.77 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=64.0
Q ss_pred CeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHH-HHHcCC---ccEEEec--CCCHHHHHHHHhcCC-CC
Q 039732 5 DYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEE-CQRLGL---TKFIGVS--NFSSKKIEALLAFST-IP 77 (214)
Q Consensus 5 dyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-l~~~Gk---ir~iGiS--~~~~~~l~~~~~~~~-~~ 77 (214)
+....+-||.++....... .|.. .....+++++++.+ +.+.|+ |+++=|. |.+.+.+.++.+... .+
T Consensus 211 ~~~laiSLha~~~e~r~~i--~p~~----~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~ 284 (345)
T PRK14457 211 QFTLAVSLHAPNQKLRETL--IPSA----KNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQ 284 (345)
T ss_pred ceEEEEEeCCCCHHHHHHh--cCCc----cCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCC
Confidence 3446678888865443110 0100 11237788888766 556664 6676666 456677776666543 34
Q ss_pred CeeeecccCcccc------h----HHHHHHHHhCCCeEEEeccCCC
Q 039732 78 PSVNQVEMNPAWQ------Q----RQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 78 ~~~~q~~~~~~~~------~----~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
..++-++||.... . ....+..+++|+.+......+.
T Consensus 285 ~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 285 SHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred CeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 5678889987542 1 3456777888999988888775
No 63
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=53.90 E-value=56 Score=28.16 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccC
Q 039732 40 GVWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 40 e~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 111 (214)
+-++.+.+|++...+. +.|=|-++...+..++... ..+++|+....+. ...++.+.|+++|+.++..+..
T Consensus 201 ~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~--a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 201 ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER--LIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 3467788888887776 7778888899998888865 3578887765532 3378999999999999876443
No 64
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=53.66 E-value=1.4e+02 Score=25.34 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC---------CCHHHHHHHHhcCCCCCeeeecccCc----ccchHHHHHHHHhCCCe
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSN---------FSSKKIEALLAFSTIPPSVNQVEMNP----AWQQRQLREFCKSKSII 104 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~---------~~~~~l~~~~~~~~~~~~~~q~~~~~----~~~~~~~~~~~~~~gi~ 104 (214)
...+.+.++.+++-|.++.+.+.+ .+.+.+..+.+ .+. ...+.+..+- .....+.++.+++.|+.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~-~g~-~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT-SGK-TVYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH-cCC-cEEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 345666666666666665444432 23333443333 222 1223333221 01114567777788888
Q ss_pred EEEeccCCC
Q 039732 105 VTAFSPLGA 113 (214)
Q Consensus 105 vi~~~~l~~ 113 (214)
+...+++..
T Consensus 230 v~~q~vLl~ 238 (321)
T TIGR03822 230 MVSQSVLLR 238 (321)
T ss_pred EEEEeeEeC
Confidence 877777765
No 65
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.49 E-value=1.5e+02 Score=25.84 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHhcCC-C------CCeeeecccCcccch----------H
Q 039732 36 LDYKGVWEAMEECQRL-GL---TKFIGVS--NFSSKKIEALLAFST-I------PPSVNQVEMNPAWQQ----------R 92 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~-Gk---ir~iGiS--~~~~~~l~~~~~~~~-~------~~~~~q~~~~~~~~~----------~ 92 (214)
...+++++++.+..++ |+ +-|+=+. |.+.+.+.++.+..+ . +..++-++||+.... .
T Consensus 252 ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~ 331 (371)
T PRK14461 252 YPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVT 331 (371)
T ss_pred CCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHH
Confidence 3488999999987643 43 2233333 667888888877665 3 468899999985431 4
Q ss_pred HHHHHHHhCCCeEEEeccCCCCCCC
Q 039732 93 QLREFCKSKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 93 ~~~~~~~~~gi~vi~~~~l~~~G~L 117 (214)
...+.++++||.+..+...|. .+.
T Consensus 332 ~F~~~L~~~gi~vtiR~s~G~-DI~ 355 (371)
T PRK14461 332 TFQRILTDYGIPCTVRVERGV-EIA 355 (371)
T ss_pred HHHHHHHHCCceEEEeCCCCc-Chh
Confidence 667888899999999988876 444
No 66
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=52.82 E-value=1.2e+02 Score=28.30 Aligned_cols=87 Identities=15% Similarity=0.023 Sum_probs=50.7
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHhcCCCCCe
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVS-NFSSKKIEALLAFSTIPPS 79 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS-~~~~~~l~~~~~~~~~~~~ 79 (214)
.+|.|||=+.+.....+.. +.+.+...+.+......++.+||- |.+++.+.++++.. .++
T Consensus 21 ~~gaD~iGfIf~~~SpR~V-----------------~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~--~ld 81 (610)
T PRK13803 21 DMLPDFIGFIFYEKSPRFV-----------------GNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKN--GID 81 (610)
T ss_pred HcCCCEEEEEecCCCCCCC-----------------CHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhc--CCC
Confidence 3688888887655433322 234413333333333457889986 78899999998877 458
Q ss_pred eeecccCcccchHHHHHHHHhCCCeEE
Q 039732 80 VNQVEMNPAWQQRQLREFCKSKSIIVT 106 (214)
Q Consensus 80 ~~q~~~~~~~~~~~~~~~~~~~gi~vi 106 (214)
++|+.-..-......++..++.++.++
T Consensus 82 ~vQLHG~e~~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 82 FVQLHGAESKAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred EEEECCCCCcccHHHHHHhhhcCCcEE
Confidence 999875432111334444444455544
No 67
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.41 E-value=56 Score=25.89 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEE
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTA 107 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 107 (214)
.+..+.+++++++..=-.||..+ .+.++++.+++.. .+|.+ ++ ....+++++|+++|+.++.
T Consensus 40 p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~Fiv-----SP-~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 40 PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SRFIV-----SP-GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CCEEE-----CC-CCCHHHHHHHHHcCCCEeC
Confidence 34455555555543334567665 4666676666643 22222 11 1237889999999988876
No 68
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=52.20 E-value=1.2e+02 Score=26.88 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEec
Q 039732 34 VPLDYKGVWEAMEECQRLGLTKFIGVS 60 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~Gkir~iGiS 60 (214)
.....+++++.++.+++.| ++.|-+.
T Consensus 173 rsr~~e~V~~Ei~~l~~~g-~~eI~l~ 198 (437)
T PRK14331 173 RSRRLGSILDEVQWLVDDG-VKEIHLI 198 (437)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEe
Confidence 4567899999999999988 6777665
No 69
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=52.01 E-value=19 Score=27.58 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcC-CccEEEecCCC--HHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEE
Q 039732 36 LDYKGVWEAMEECQRLG-LTKFIGVSNFS--SKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTA 107 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~G-kir~iGiS~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 107 (214)
.+..+++++|.++++.| +|..+|..+.. ...+..++. + .+.++.|+-.+--...+..+++.|+.++.
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---V--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT------EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---C--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 45778999999998777 67777777653 455555553 2 56666665433336788899999999887
No 70
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=51.74 E-value=1.8e+02 Score=25.99 Aligned_cols=100 Identities=9% Similarity=-0.003 Sum_probs=53.3
Q ss_pred EEEEecCCCCCCCcccccCC---Cc--CCCCCCCHHHHHHHHHHHHH-----cCCccEEEec-----CCCHHHHHHHHhc
Q 039732 9 LYLIHWPISAKPSEKLQSLI---PK--EDLVPLDYKGVWEAMEECQR-----LGLTKFIGVS-----NFSSKKIEALLAF 73 (214)
Q Consensus 9 l~~lH~~~~~~~~~~~~~~~---~~--~~~~~~~~~e~~~~l~~l~~-----~Gkir~iGiS-----~~~~~~l~~~~~~ 73 (214)
.+|+|-|-.... |.|+- .. ........+.+.+.++...+ .+.|+.|=+. ..+++.+.++++.
T Consensus 63 ~lYiHIPFC~~~---C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~~~l~~ll~~ 139 (449)
T PRK09058 63 LLYIHIPFCRTH---CTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSAEDLARLITA 139 (449)
T ss_pred EEEEEeCCcCCc---CCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCHHHHHHHHHH
Confidence 578998863332 34442 10 00001123344555554443 2456666443 2456777777765
Q ss_pred CC----CCC-eeeecccCcccchHHHHHHHHhCCCeEEEeccC
Q 039732 74 ST----IPP-SVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 74 ~~----~~~-~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 111 (214)
.+ +.. .-+-++.|+-.-..+.++.+++.|+.-+..+.=
T Consensus 140 i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQ 182 (449)
T PRK09058 140 LREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQ 182 (449)
T ss_pred HHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCC
Confidence 43 111 122344444444578899999999988876444
No 71
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=51.53 E-value=75 Score=29.09 Aligned_cols=70 Identities=10% Similarity=0.001 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHH-cCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEe
Q 039732 36 LDYKGVWEAMEECQR-LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~-~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~ 108 (214)
.+.-+++++|..+++ .++|.-+|+.+.. ..+..+.+..++ ++.++.|+-..-....+..+++.|+.++.-
T Consensus 81 ~s~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~--~i~~~~~~~~~e~~~~~~~l~~~G~~~viG 151 (526)
T TIGR02329 81 PTGFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNL--DIVQRSYVTEEDARSCVNDLRARGIGAVVG 151 (526)
T ss_pred CChhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCC--ceEEEEecCHHHHHHHHHHHHHCCCCEEEC
Confidence 446788999988887 5788899998764 445555555544 455556554444477888999999988873
No 72
>PRK08392 hypothetical protein; Provisional
Probab=51.02 E-value=1.2e+02 Score=23.88 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC-------C-CHHHHHHHHhc---CCCCCeeeecccCcccchHHHHHHHHhCCCeEE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSN-------F-SSKKIEALLAF---STIPPSVNQVEMNPAWQQRQLREFCKSKSIIVT 106 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~-------~-~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi 106 (214)
..+-++.+.++.+.|.+.-+|=-. . ..+.+.++++. .+....+|- ....+...+++.|++.|+.++
T Consensus 102 ~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt---~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 102 HHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS---RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred HHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC---CCCCCCHHHHHHHHHcCCEEE
Confidence 467778888888999877666321 1 11233333333 333334442 122345789999999998765
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHH
Q 039732 107 AFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQ 142 (214)
Q Consensus 107 ~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q 142 (214)
.-|--.. .......+...+++++.|.++..
T Consensus 179 igSDAH~------~~~vg~~~~a~~~~~~~g~~~~~ 208 (215)
T PRK08392 179 FASDAHR------PEDVGNVSWSLKVFKKAGGKKED 208 (215)
T ss_pred EeCCCCC------hHHCCcHHHHHHHHHHcCCCHHH
Confidence 4333332 12222245667777787877655
No 73
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=50.95 E-value=70 Score=21.28 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=32.0
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 45 MEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 45 l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
++++++.||+ ..| ..+..+.++....+..++--..+. +....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl-~~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSI-VIG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCE-EEc-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 3455666654 223 355555556554443333333332 122667888888888887764
No 74
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=50.50 E-value=1.4e+02 Score=24.47 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEecc
Q 039732 41 VWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 110 (214)
+...+..+++.-.+ -+.+=+++++.++++++.. ...++-+..- . ..++++.+++.|..++.+..
T Consensus 63 l~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G--~~iINsis~~--~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 63 VVPVIKALRDQPDV-PISVDTYRAEVARAALEAG--ADIINDVSGG--Q-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcC--CCEEEECCCC--C-CchhHHHHHHcCCcEEEEeC
Confidence 55666666665222 3777789999999999873 2345544332 2 46789999999999999654
No 75
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=49.99 E-value=1.7e+02 Score=25.22 Aligned_cols=72 Identities=17% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHhc---CCCCCe-eeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSN-----FSSKKIEALLAF---STIPPS-VNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~-----~~~~~l~~~~~~---~~~~~~-~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
+.+.+.+..+.....++.|=+.+ .+++.+..+.+. ....+. -+-++.|+..-..+.++.+++.|+.-+..+
T Consensus 37 ~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiG 116 (374)
T PRK05799 37 KALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIG 116 (374)
T ss_pred HHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEE
Confidence 34444444333334466665543 245666655443 222211 223344444445789999999998766654
Q ss_pred c
Q 039732 110 P 110 (214)
Q Consensus 110 ~ 110 (214)
.
T Consensus 117 v 117 (374)
T PRK05799 117 L 117 (374)
T ss_pred C
Confidence 4
No 76
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=49.97 E-value=1.3e+02 Score=25.58 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHhcCCC-CCeee---eccc-------CcccchHHHHHHH
Q 039732 35 PLDYKGVWEAMEECQRLGLTKFIGVSN-----FSSKKIEALLAFSTI-PPSVN---QVEM-------NPAWQQRQLREFC 98 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~~Gkir~iGiS~-----~~~~~l~~~~~~~~~-~~~~~---q~~~-------~~~~~~~~~~~~~ 98 (214)
..+.+++.+.+..+++.| ++.+.+.+ ...+.+.++++..+- .|.+. ..+. +......+.++..
T Consensus 69 ~ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~L 147 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRL 147 (343)
T ss_pred cCCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHH
Confidence 367899999999999997 77777762 234444444444321 11111 1110 1112236888899
Q ss_pred HhCCCeEEE
Q 039732 99 KSKSIIVTA 107 (214)
Q Consensus 99 ~~~gi~vi~ 107 (214)
++.|+.-+.
T Consensus 148 keAGl~~i~ 156 (343)
T TIGR03551 148 KEAGLDSMP 156 (343)
T ss_pred HHhCccccc
Confidence 998887653
No 77
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=49.67 E-value=1.7e+02 Score=25.99 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEec
Q 039732 39 KGVWEAMEECQRL------GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 39 ~e~~~~l~~l~~~------Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~ 109 (214)
++-++.|.+++++ +.=-..+-|-++.+.+.++++.. -.+++|+..+-+- ...++.++|+++||.++..+
T Consensus 278 ~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~--a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~ 355 (408)
T TIGR01502 278 QAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK--AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGG 355 (408)
T ss_pred hhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC--CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 3457777777766 33445566677888998888765 3478888766543 23789999999999999876
Q ss_pred cC
Q 039732 110 PL 111 (214)
Q Consensus 110 ~l 111 (214)
..
T Consensus 356 ~~ 357 (408)
T TIGR01502 356 TC 357 (408)
T ss_pred CC
Confidence 55
No 78
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.61 E-value=1.3e+02 Score=26.29 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHH-HcCC---ccEEEec--CCCHHHHHHHHhcCC-C---CCeeeecccCcccch----------HHHH
Q 039732 36 LDYKGVWEAMEECQ-RLGL---TKFIGVS--NFSSKKIEALLAFST-I---PPSVNQVEMNPAWQQ----------RQLR 95 (214)
Q Consensus 36 ~~~~e~~~~l~~l~-~~Gk---ir~iGiS--~~~~~~l~~~~~~~~-~---~~~~~q~~~~~~~~~----------~~~~ 95 (214)
...+++++++.++. +.|+ |.|+=+. |.+.+.+.++.+..+ . ...++-++||..... ....
T Consensus 262 ~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~ 341 (373)
T PRK14459 262 WKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFV 341 (373)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHH
Confidence 34789999988876 5465 6666666 445666666655443 2 357888999985431 4678
Q ss_pred HHHHhCCCeEEEeccCCC
Q 039732 96 EFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 96 ~~~~~~gi~vi~~~~l~~ 113 (214)
+..+++||.+..+...+.
T Consensus 342 ~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 342 RRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred HHHHHCCCeEEeeCCCCc
Confidence 888899999999888876
No 79
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=49.24 E-value=53 Score=28.30 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccCC
Q 039732 41 VWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
-++.+.++++...+. +.|-|-++...+..+++... .+++|+....+. ....+...|+.+|+.++..+.+.
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~--~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~ 299 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASA--ADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLE 299 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCC--CCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchh
Confidence 366667777776665 77777888888888877653 467777655432 23678899999999987654443
No 80
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=48.85 E-value=2e+02 Score=25.73 Aligned_cols=138 Identities=13% Similarity=0.174 Sum_probs=72.0
Q ss_pred ccccCCCc---CCCCCCCHHHHHHHHHHHHHcCCccEEEecC-----CC--HHHHHHHHhcC-CCCCeeeeccc---Ccc
Q 039732 23 KLQSLIPK---EDLVPLDYKGVWEAMEECQRLGLTKFIGVSN-----FS--SKKIEALLAFS-TIPPSVNQVEM---NPA 88 (214)
Q Consensus 23 ~~~~~~~~---~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~-----~~--~~~l~~~~~~~-~~~~~~~q~~~---~~~ 88 (214)
.|+|+... ......+.+++++.+..++++| ++.|-+.+ +. ...+.+++... .. .....+.+ ++.
T Consensus 167 ~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~-~~~~~ir~~~~~p~ 244 (449)
T PRK14332 167 FCTFCVVPYTRGRERSRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDE-TTIERIRFTSPHPK 244 (449)
T ss_pred CCCCCCcccccCCcccCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcC-CCcceEEEECCCcc
Confidence 34666432 2234667899999999999997 77776552 21 11233333221 11 11112222 233
Q ss_pred cchHHHHHHHHhCCCeE-EEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhc-C-----cEEeeCC--
Q 039732 89 WQQRQLREFCKSKSIIV-TAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQ-G-----AIVVAKS-- 159 (214)
Q Consensus 89 ~~~~~~~~~~~~~gi~v-i~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~-~-----~~vl~g~-- 159 (214)
....++++..++.|-.+ ...-++-+ | ....+..+-+.+...-..-+++.+... | +..|+|.
T Consensus 245 ~~~~ell~~m~~~~~~~~~l~lgvQS-g---------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPg 314 (449)
T PRK14332 245 DFPDHLLSLMAKNPRFCPNIHLPLQA-G---------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPN 314 (449)
T ss_pred cCCHHHHHHHHhCCCccceEEECCCc-C---------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCC
Confidence 33478899988877321 22233433 2 335555554444333333455555543 2 3467784
Q ss_pred CCHHHHHHhhccc
Q 039732 160 FNKERLKENLDIF 172 (214)
Q Consensus 160 ~~~~~l~enl~a~ 172 (214)
.+.+++++.++.+
T Consensus 315 ET~edf~~tl~~v 327 (449)
T PRK14332 315 ETEEEFEDTLAVV 327 (449)
T ss_pred CCHHHHHHHHHHH
Confidence 6777777776543
No 81
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.21 E-value=1.6e+02 Score=24.46 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecC-CC------HHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEe
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSN-FS------SKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~-~~------~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~ 108 (214)
.+.+.+++.+++++++|.---|++=+ ++ .+...+.+..+++ +-+-++=-+.+...++.+.|+++|+..|-.
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv--dGlivpDLP~ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV--DGLLVPDLPPEESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC--CEEEeCCCChHHHHHHHHHHHHcCCcEEEE
Confidence 34566677777777554433333222 12 2222222333332 333333223333467888888888888766
Q ss_pred ccCC
Q 039732 109 SPLG 112 (214)
Q Consensus 109 ~~l~ 112 (214)
-+-.
T Consensus 154 vaPt 157 (265)
T COG0159 154 VAPT 157 (265)
T ss_pred eCCC
Confidence 5543
No 82
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=48.20 E-value=45 Score=28.68 Aligned_cols=69 Identities=7% Similarity=0.026 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccC
Q 039732 41 VWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 111 (214)
-++.+.+++++..|. +.|=|-++...+..+++..- .+++|.....+. ...++..+|+++|+.++..+..
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~--~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGA--ADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML 299 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCC--CCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc
Confidence 356677777776655 66666678888888877642 366666554432 2367888999999988765434
No 83
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=47.26 E-value=1.9e+02 Score=24.98 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcC--CccEEEecC-----CCHHHHHHHHhcCC----CCCe-eeecccCcccchHHHHHHHHhCCCeE
Q 039732 38 YKGVWEAMEECQRLG--LTKFIGVSN-----FSSKKIEALLAFST----IPPS-VNQVEMNPAWQQRQLREFCKSKSIIV 105 (214)
Q Consensus 38 ~~e~~~~l~~l~~~G--kir~iGiS~-----~~~~~l~~~~~~~~----~~~~-~~q~~~~~~~~~~~~~~~~~~~gi~v 105 (214)
.+.+.+.++.+.+.| .|+.+-+++ .+++.+.++++... +... -+-++.|+-.-..+.++..++.|+.-
T Consensus 34 ~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~r 113 (377)
T PRK08599 34 LDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNR 113 (377)
T ss_pred HHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCE
Confidence 345566665444433 566665542 23567777665442 2111 12234444444578899999999877
Q ss_pred EEeccCC
Q 039732 106 TAFSPLG 112 (214)
Q Consensus 106 i~~~~l~ 112 (214)
+..+.=.
T Consensus 114 vsiGvqS 120 (377)
T PRK08599 114 ISLGVQT 120 (377)
T ss_pred EEEeccc
Confidence 7665443
No 84
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=47.13 E-value=50 Score=28.17 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEe
Q 039732 41 VWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~ 108 (214)
-++.+.+++++..|. +.|=|.++...+..+++.. ..+++|.....+. ...++...|+++|+.++..
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~--a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR--AVDILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 466777788777666 6677778888888888764 2477777655432 2368899999999987653
No 85
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.95 E-value=1.6e+02 Score=25.40 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHcCC----ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccc------h----HHHHHHHH
Q 039732 37 DYKGVWEAMEECQRLGL----TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQ------Q----RQLREFCK 99 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gk----ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~ 99 (214)
..+++++++..+.+++. |+|+=+. |.+.+.+.++.+... ....++-++||.... . ....+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 36889999998877542 4556554 445577777666554 335677778887542 1 35677788
Q ss_pred hCCCeEEEeccCCCCCCC
Q 039732 100 SKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 100 ~~gi~vi~~~~l~~~G~L 117 (214)
++|+.+......+. .+.
T Consensus 324 ~~gi~v~ir~~~g~-di~ 340 (356)
T PRK14455 324 KNGVNCTIRREHGT-DID 340 (356)
T ss_pred HCCCcEEEeCCCCc-chh
Confidence 99999988887765 443
No 86
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=46.73 E-value=95 Score=28.56 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccC
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 111 (214)
....++++-+.+.+++.+|+.+|+=.+....+..+++.+++++..+--.|.-+...-.-++..-..|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 4577899999999999999999999999999998899888764443333332222233344444445444443333
No 87
>PRK14017 galactonate dehydratase; Provisional
Probab=46.43 E-value=74 Score=27.62 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEecc
Q 039732 42 WEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 42 ~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~ 110 (214)
++.+.++++...+. +.|=|-++...+..+++..- .+++|.....+- ...++.+.|+++|+.++..+.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 57788888887666 66777789999999988753 478887766543 237899999999999988644
No 88
>PRK08609 hypothetical protein; Provisional
Probab=46.00 E-value=2.5e+02 Score=26.04 Aligned_cols=96 Identities=8% Similarity=0.043 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC---------CC--HHHHHHHHhcCCCCCeeeecccCccc--chHHHHHHHHhCCCe
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSN---------FS--SKKIEALLAFSTIPPSVNQVEMNPAW--QQRQLREFCKSKSII 104 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~---------~~--~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~~~~~~~~gi~ 104 (214)
.+++++.+.++.+.|.+.-+|=-. +. .+.+.+++...+ .++|++-+... ....++..|.+.|+.
T Consensus 444 ~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G---~~lEINa~~~r~~~~~~~~~~~~e~Gv~ 520 (570)
T PRK08609 444 EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN---TALELNANPNRLDLSAEHLKKAQEAGVK 520 (570)
T ss_pred HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC---CEEEEcCCccccCccHHHHHHHHHcCCE
Confidence 577788899988888877766332 11 122333323333 35555554332 237789999999987
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHH
Q 039732 105 VTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQ 142 (214)
Q Consensus 105 vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q 142 (214)
++.-|--.. ...+...+.-..++++.|.++.+
T Consensus 521 i~igSDAH~------~~~l~~~~~~v~~ar~~~~~~~~ 552 (570)
T PRK08609 521 LAINTDAHH------TEMLDDMKYGVATARKGWIQKDR 552 (570)
T ss_pred EEEECCCCC------hhhhCcHHHHHHHHHHcCCCHHH
Confidence 654433332 23334456666777777776654
No 89
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.00 E-value=2.2e+02 Score=25.46 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEec
Q 039732 34 VPLDYKGVWEAMEECQRLGLTKFIGVS 60 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~Gkir~iGiS 60 (214)
...+.+++++.++.+.+.| ++.|-++
T Consensus 182 rsr~~e~Il~ei~~l~~~G-~keI~l~ 207 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARG-AKEITLL 207 (459)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEe
Confidence 3567899999999999998 5666544
No 90
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=45.98 E-value=69 Score=27.30 Aligned_cols=67 Identities=9% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEec
Q 039732 41 VWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~ 109 (214)
-++.+.++++.-.|. ..|=|-++++.+.++++.. ..+++|+....+. ...++...|+++|+.++..+
T Consensus 228 ~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~--~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 228 DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG--AVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 356667777775555 4445557888888888765 3477777655543 23788999999999977654
No 91
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=45.84 E-value=33 Score=21.70 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHh
Q 039732 128 ALKQIADAHGKTVAQVCLRWII 149 (214)
Q Consensus 128 ~l~~~a~~~~~s~~q~al~~~l 149 (214)
-+.+||+++|.++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999976
No 92
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=45.71 E-value=1.1e+02 Score=24.29 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEE
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTA 107 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 107 (214)
...++.+++++++..=-.+|..+ .+.++++.+++.. .+|.+ .+. ...+++++|+++|+.++.
T Consensus 44 ~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fiv--sP~----~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 44 PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFIV--SPG----LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEE--CCC----CCHHHHHHHHHcCCcEEC
Confidence 44556666666654435677776 4677777777643 22221 111 146899999999998876
No 93
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=45.70 E-value=80 Score=24.95 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCC
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
..+...++.+++..-=--+.|=+++++.++++++. +.++..+...+.. ..++++.++++|..++.+..-+
T Consensus 57 ~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~~ 126 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSDG 126 (210)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESESS
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEeccc
Confidence 34556666666511112356668999999999998 5543333333222 5689999999999999987773
No 94
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=45.67 E-value=1.3e+02 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCCeEEEeccC
Q 039732 92 RQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l 111 (214)
..+++.|+++++.+----.|
T Consensus 206 D~lLeI~~~yDVtlSLGDgl 225 (423)
T TIGR00190 206 DYILEIAKEYDVTLSLGDGL 225 (423)
T ss_pred HHHHHHHHHhCeeeeccCCc
Confidence 55777777777765443333
No 95
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=45.09 E-value=48 Score=27.01 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC----CCCeeeecccCcccchHHHHHHHHhC-CCe
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST----IPPSVNQVEMNPAWQQRQLREFCKSK-SII 104 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~-gi~ 104 (214)
.++..+.+++++++| -.+|+-++...+++.+....+ ..+.+.-+..+.-.++.+++++|-++ |+.
T Consensus 115 ~~~~~~~lq~lR~~g--~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~ 184 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKG--TILGIISNFDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVK 184 (237)
T ss_pred ccHHHHHHHHHHhCC--eEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCC
Confidence 355569999999999 445654443466666655554 22334444455556667777777654 443
No 96
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=45.03 E-value=1.1e+02 Score=21.63 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCC--------HHHHHHHHhcCCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFS--------SKKIEALLAFSTIP 77 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~--------~~~l~~~~~~~~~~ 77 (214)
..++.+.|..|+++| ++-+=+||.. .+.+...++..+..
T Consensus 27 ~~~v~~~l~~L~~~g-~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 27 YPEVPDALAELKEAG-YKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCCHHHHHHHHHHCC-CEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 467888999999887 4555566665 56677777766543
No 97
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=44.75 E-value=1.1e+02 Score=25.00 Aligned_cols=65 Identities=22% Similarity=0.420 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCC----------CHHHHHHHHHhhcC--cEEeeCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGK----------TVAQVCLRWIIEQG--AIVVAKS 159 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~----------s~~q~al~~~l~~~--~~vl~g~ 159 (214)
.++.++|+++||.+++ +|+.. +.+. +..++++ +-. -.|+.+.+.+ ..+-.|+
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~d-~l~~~~~~~~KIaS~dl~n~-~lL~~~A~tgkPvIlSTG~ 122 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESVD-FLEELGVPAYKIASGDLTNL-PLLEYIAKTGKPVILSTGM 122 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHHH-HHHHHT-SEEEE-GGGTT-H-HHHHHHHTT-S-EEEE-TT
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHHH-HHHHcCCCEEEeccccccCH-HHHHHHHHhCCcEEEECCC
Confidence 6789999999999877 56543 1222 2233222 222 2566666665 6666799
Q ss_pred CCHHHHHHhhccc
Q 039732 160 FNKERLKENLDIF 172 (214)
Q Consensus 160 ~~~~~l~enl~a~ 172 (214)
++.++|++.++.+
T Consensus 123 stl~EI~~Av~~~ 135 (241)
T PF03102_consen 123 STLEEIERAVEVL 135 (241)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998877
No 98
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=44.56 E-value=1.7e+02 Score=25.04 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=40.4
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHhcCC-----CCCeeeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 48 CQRLGLTKFIGVSNFSSKKIEALLAFST-----IPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 48 l~~~Gkir~iGiS~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
.-+.|=+..||....+++.+++.++..+ -+|-++.+.+.......+.++.+.+.++.++..+
T Consensus 23 VS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 23 VAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 3467878888888888888776664432 2344544333221123678999999999988764
No 99
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.03 E-value=1.5e+02 Score=24.70 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=47.6
Q ss_pred CCCCCeeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCee
Q 039732 1 TLQMDYVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSV 80 (214)
Q Consensus 1 rL~tdyiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~ 80 (214)
++|+++|++-.+++|... | . ..+.++.+..+.+...++..++. .+...++.+++.. ++...
T Consensus 37 ~~Gv~~IEvgsf~~p~~~--------p--------~-~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~ 97 (287)
T PRK05692 37 AAGLSYIEVASFVSPKWV--------P--------Q-MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVA 97 (287)
T ss_pred HcCCCEEEeCCCcCcccc--------c--------c-cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEE
Confidence 468888888644444211 1 0 11224555555444446666665 4778888887753 22222
Q ss_pred eecccCccc--------------chHHHHHHHHhCCCeEEE
Q 039732 81 NQVEMNPAW--------------QQRQLREFCKSKSIIVTA 107 (214)
Q Consensus 81 ~q~~~~~~~--------------~~~~~~~~~~~~gi~vi~ 107 (214)
+-++.|... .-.+.+++++++|+.+.+
T Consensus 98 i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 98 VFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 222222110 014689999999998864
No 100
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=43.75 E-value=2.2e+02 Score=24.90 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc---hHHHHHHHHhCCCeEEEeccCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
...++..+..+.+.+.++.+-+...+.+.+++.++. +.+..++..+-|+... -.++.+.|+++|+-++.=...+.
T Consensus 109 Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 109 YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 455555666665556677676665677777776642 2333444445554332 17889999999999988777664
No 101
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.48 E-value=99 Score=26.47 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEec
Q 039732 41 VWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~ 109 (214)
-++.+.+|+++.-+. +.|=|.++...+..+++... .+++|.....+- ...++.+.|+++|+.++..+
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 467788888776555 66677788888888877542 477777655432 23789999999999988654
No 102
>PRK07157 acetate kinase; Provisional
Probab=43.41 E-value=1e+02 Score=27.20 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHH-HHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeE---EEeccCCCCCCC
Q 039732 42 WEAMEECQRLGLTKFIGVSNFSSKKI-EALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIV---TAFSPLGAAGSS 117 (214)
Q Consensus 42 ~~~l~~l~~~Gkir~iGiS~~~~~~l-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v---i~~~~l~~~G~L 117 (214)
|..=.++.++-.||.+|+=+-+...+ +++.+..+. .+...+.+|+-+. .=--|.++|..+ ++++||. |..
T Consensus 161 YalP~~~~~~~giRRyGfHGlS~~yva~~~a~~lg~-~~~~~Iv~HLG~G---~Si~Ai~~GksvDtsmG~tpLe--Gl~ 234 (400)
T PRK07157 161 YPINYEIAKKYGIKKYGFHGISHKFITNKVEKILNK-DKVNFVNLHIGNG---ASLCAIKNSKSIDTSMGLTPLA--GVM 234 (400)
T ss_pred cCCCHHHHHHcCceEecchHHHHHHHHHHHHHHhCc-cccCEEEEEeCCC---ceeeeeeCCeEEEeCCCCCCcc--CCC
Confidence 33334667775699999876554443 333333321 2444444444332 222334566665 4556775 555
Q ss_pred CC-CCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC-cEEeeC-CCCHHHHHHhhc
Q 039732 118 WG-TNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG-AIVVAK-SFNKERLKENLD 170 (214)
Q Consensus 118 ~~-~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~-~~vl~g-~~~~~~l~enl~ 170 (214)
.+ +........+..++++.+.++.++ -..+..+. -.-+.| +++...|.+..+
T Consensus 235 mgtRsG~ldp~~~~~l~~~~~~s~~e~-~~~Ln~~SGLlg~sG~s~D~R~l~~~~~ 289 (400)
T PRK07157 235 MGTRSGDIDPSIHEFVAKEANMSISEF-TDLLNKKSGLLGVSGISSDLRDVIKAAE 289 (400)
T ss_pred CCCCCCCCChHHHHHHHHhcCCCHHHH-HHHHhhccCceEecCCCCcHHHHHHHHH
Confidence 43 334556678888999999999884 45555554 667889 788888876654
No 103
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=43.04 E-value=1e+02 Score=27.05 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccC
Q 039732 41 VWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 111 (214)
-++.+.++++...+. +.|-|-++...+..+++..- .+++|.....+. ...++.+.|+++|+.++..+..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 467777888877665 66666677888888877653 477777765433 3378999999999999887654
No 104
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=41.90 E-value=27 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCeEEEeccCCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
.++++.|+++||.+++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 7899999999999999988864
No 105
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=41.76 E-value=1.7e+02 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeEEEeccCCCCCCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~~~G~L 117 (214)
..+++.|++++|.+----.|.- |.+
T Consensus 209 D~lLeI~~~yDVtlSLGDglRP-G~i 233 (431)
T PRK13352 209 DYLLEILKEYDVTLSLGDGLRP-GCI 233 (431)
T ss_pred HHHHHHHHHhCeeeeccCCcCC-Ccc
Confidence 6788888888887654444443 444
No 106
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.70 E-value=1.7e+02 Score=25.38 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHH-HcCC---ccEEEecC--CCHHHHHHHHhcCC-CCCeeeecccCcccc------h----HHHHHHHH
Q 039732 37 DYKGVWEAMEECQ-RLGL---TKFIGVSN--FSSKKIEALLAFST-IPPSVNQVEMNPAWQ------Q----RQLREFCK 99 (214)
Q Consensus 37 ~~~e~~~~l~~l~-~~Gk---ir~iGiS~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~ 99 (214)
..+++++++..+. +.|+ |+|+=|.+ .+.+.+.++.+..+ ....++-++||.... . ....+..+
T Consensus 245 ~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~ 324 (356)
T PRK14462 245 NIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLN 324 (356)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3578888887554 5565 67777764 56777777766544 345788889997542 1 34566777
Q ss_pred hCCCeEEEeccCCCCCCCC
Q 039732 100 SKSIIVTAFSPLGAAGSSW 118 (214)
Q Consensus 100 ~~gi~vi~~~~l~~~G~L~ 118 (214)
++|+.+......+. .+..
T Consensus 325 ~~gi~vtvR~~~G~-dI~a 342 (356)
T PRK14462 325 SKGLLCTIRESKGL-DISA 342 (356)
T ss_pred HCCCcEEEeCCCCC-chhh
Confidence 88999999888876 5443
No 107
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=41.69 E-value=2.6e+02 Score=24.95 Aligned_cols=74 Identities=9% Similarity=0.135 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHc----CCccEEEec----C-CCHHHHHHHHhcCC----CCC-eeeecccCcccchHHHHHHHHhCCCe
Q 039732 39 KGVWEAMEECQRL----GLTKFIGVS----N-FSSKKIEALLAFST----IPP-SVNQVEMNPAWQQRQLREFCKSKSII 104 (214)
Q Consensus 39 ~e~~~~l~~l~~~----Gkir~iGiS----~-~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~~~~~~~~~gi~ 104 (214)
+.+.+.+..+.+. -.|+.+=+. + .+++.+.++++... +.+ .-+-++.|+..-..+.++..++.|+.
T Consensus 84 ~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~ 163 (453)
T PRK09249 84 DALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFN 163 (453)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCC
Confidence 3445555544432 246666543 2 35677777776543 111 12344455544457899999999988
Q ss_pred EEEeccCC
Q 039732 105 VTAFSPLG 112 (214)
Q Consensus 105 vi~~~~l~ 112 (214)
-+..+.=.
T Consensus 164 risiGvqS 171 (453)
T PRK09249 164 RLSLGVQD 171 (453)
T ss_pred EEEECCCC
Confidence 77765443
No 108
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.08 E-value=2.3e+02 Score=24.66 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=51.8
Q ss_pred CHHHHHHHHHH-HHHcC---CccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccch----------HHHHHHHH
Q 039732 37 DYKGVWEAMEE-CQRLG---LTKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQQ----------RQLREFCK 99 (214)
Q Consensus 37 ~~~e~~~~l~~-l~~~G---kir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~~ 99 (214)
..+++++++.+ +.+.| +|+++=+. |.+.+.+.++++... ....++-++||.+... ....+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 47888888876 45556 25555555 455556666666554 2346777788875441 45677788
Q ss_pred hCCCeEEEeccCCC
Q 039732 100 SKSIIVTAFSPLGA 113 (214)
Q Consensus 100 ~~gi~vi~~~~l~~ 113 (214)
++|+.+......+.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 89999999888875
No 109
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=40.78 E-value=1.1e+02 Score=26.93 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccC
Q 039732 41 VWEAMEECQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 111 (214)
-++.+.+|++.-.|. +.|=|-++...+..+++.. ..+++|....-.. ...++.+.|+.+|+.++..+..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~--a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ--LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC--CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 367788888886666 6777788999999998875 3478887655432 3378999999999999886543
No 110
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=40.56 E-value=88 Score=24.66 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCccEEEecC-CCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEE
Q 039732 41 VWEAMEECQRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTA 107 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir~iGiS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 107 (214)
..+.++.++++-.=-.+|..+ .+.++++.+++.. ..|.+. + ....+++++|+++|+.++.
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG-A~FivS--P----~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG-AQFIVS--P----GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEE--S----S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC-CCEEEC--C----CCCHHHHHHHHHcCCcccC
Confidence 444555555443335699988 5889999988865 222221 1 1247999999999999998
No 111
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.50 E-value=2.6e+02 Score=24.67 Aligned_cols=127 Identities=9% Similarity=0.090 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEecC--CC--------HHHHHHHHhcCCCCCeeeecccCcccc---hHHHHHHHHh
Q 039732 34 VPLDYKGVWEAMEECQRLGLTKFIGVSN--FS--------SKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKS 100 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~Gkir~iGiS~--~~--------~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~ 100 (214)
...+.+++++.++.++++| ++.|-+.+ ++ ...+..+++...-.+....+++....+ ..++++..++
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G-~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~ 229 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRG-SREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAH 229 (418)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHh
Confidence 4567899999999999988 55555442 11 112444433221001112234433333 3678887777
Q ss_pred CCCeE-EEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhc--C----cEEeeC--CCCHHHHHHhhcc
Q 039732 101 KSIIV-TAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQ--G----AIVVAK--SFNKERLKENLDI 171 (214)
Q Consensus 101 ~gi~v-i~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~--~----~~vl~g--~~~~~~l~enl~a 171 (214)
.+.++ ...-++-+ .....+..+-+.+......-+++.+... + ...|+| ..+.++.++.++-
T Consensus 230 ~~~~~~~l~lglQS----------gsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~f 299 (418)
T PRK14336 230 LPKVCRSLSLPVQA----------GDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKL 299 (418)
T ss_pred cCccCCceecCCCc----------CCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHH
Confidence 54211 11122222 1334555554444333333444444443 3 245666 3566666666654
No 112
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.26 E-value=2e+02 Score=25.38 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch---HHHHHHHHhCCCeEEEeccCCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGAA 114 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~ 114 (214)
...++..++.+.++.-|....+-.-+...+.+.+...+.+...+..+-|+...- ..+.+.|+++|+-++.-+.++.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 578888899988887777777766666555555543334557777788876653 7889999999999999999997
Q ss_pred CCCC
Q 039732 115 GSSW 118 (214)
Q Consensus 115 G~L~ 118 (214)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 7775
No 113
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=40.25 E-value=1.3e+02 Score=25.25 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
.+.+...+..+.++=+| -+.+- .| +.+.+.++++. -|..+|+.-|-+..+ ++++++|+..|+.|=+
T Consensus 59 ~~~~~~~~~~~a~~~~V-PValHLDHg~~~e~i~~ai~~---GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEa 133 (286)
T PRK12738 59 LEEIYALCSAYSTTYNM-PLALHLDHHESLDDIRRKVHA---GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEA 133 (286)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHc---CCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 44455555555554433 22222 22 45667777664 367888877765543 6899999999999854
No 114
>PRK06361 hypothetical protein; Provisional
Probab=40.07 E-value=1.8e+02 Score=22.68 Aligned_cols=91 Identities=8% Similarity=0.065 Sum_probs=49.6
Q ss_pred HHHHHcCCccEEEecCC-CHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCC
Q 039732 46 EECQRLGLTKFIGVSNF-SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVM 124 (214)
Q Consensus 46 ~~l~~~Gkir~iGiS~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~ 124 (214)
.++.+.|.+.-+|=-.. ....+ +++...++.+.++- ..+.......+++.+++.|+.++.-+.... .....
T Consensus 106 ~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~~lEin~-~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~ 177 (212)
T PRK06361 106 LAAIECEDVDILAHPGLITEEEA-ELAAENGVFLEITA-RKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLI 177 (212)
T ss_pred HHHHhCCCCcEecCcchhhHHHH-HHHHHcCeEEEEEC-CCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHH
Confidence 45667787665553222 22223 33333433233321 111122336788999999999777666553 23333
Q ss_pred ChHHHHHHHHHhCCCHHHHH
Q 039732 125 NNEALKQIADAHGKTVAQVC 144 (214)
Q Consensus 125 ~~~~l~~~a~~~~~s~~q~a 144 (214)
..+.+.+++++.|.+..++-
T Consensus 178 ~~~~~~~i~~~~gl~~~~v~ 197 (212)
T PRK06361 178 TYEFARKVALGAGLTEKELE 197 (212)
T ss_pred HHHHHHHHHcCCCCCHHHHH
Confidence 45667777777777776644
No 115
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=39.12 E-value=1.6e+02 Score=26.32 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCcc-----EEEecCCCH---------HHHHHHHhcCCCCCeeeec-ccCcccch-HHHHHHHHhCCCeE
Q 039732 42 WEAMEECQRLGLTK-----FIGVSNFSS---------KKIEALLAFSTIPPSVNQV-EMNPAWQQ-RQLREFCKSKSIIV 105 (214)
Q Consensus 42 ~~~l~~l~~~Gkir-----~iGiS~~~~---------~~l~~~~~~~~~~~~~~q~-~~~~~~~~-~~~~~~~~~~gi~v 105 (214)
++.|.+|.+||+|+ ++|..+... ..|.+-+...++. .++.+ .|..+.+- .-+.....+.||.+
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVD-AvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVD-AVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCC-EEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 67899999999995 556554322 1122333334453 34444 56666665 55777778889998
Q ss_pred EEeccC
Q 039732 106 TAFSPL 111 (214)
Q Consensus 106 i~~~~l 111 (214)
+-+..+
T Consensus 368 V~i~~~ 373 (431)
T TIGR01917 368 VHICTV 373 (431)
T ss_pred EEEeec
Confidence 877655
No 116
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=38.93 E-value=2e+02 Score=23.99 Aligned_cols=66 Identities=9% Similarity=0.039 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
.+.+...+..+.++=+| -+.+= .| +.+.+.++++.. |..+|+.-|-+..+ ++++++|+..|+.|=+
T Consensus 54 ~~~~~~~~~~~a~~~~V-PV~lHLDH~~~~~~i~~ai~~G---ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEa 128 (276)
T cd00947 54 LELLVAMVKAAAERASV-PVALHLDHGSSFELIKRAIRAG---FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEA 128 (276)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHhC---CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 44555555555544333 22222 23 467777777653 78888887776554 6899999999999854
No 117
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=38.90 E-value=1.7e+02 Score=26.07 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCcc-----EEEecCCCHHH---------HHHHHhcCCCCCeeeec-ccCcccch-HHHHHHHHhCCCeE
Q 039732 42 WEAMEECQRLGLTK-----FIGVSNFSSKK---------IEALLAFSTIPPSVNQV-EMNPAWQQ-RQLREFCKSKSIIV 105 (214)
Q Consensus 42 ~~~l~~l~~~Gkir-----~iGiS~~~~~~---------l~~~~~~~~~~~~~~q~-~~~~~~~~-~~~~~~~~~~gi~v 105 (214)
++.|.+|.+||+|+ ++|..+..... |.+-+...++. .++.+ .+..+.+- .-+.....+.||.+
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVD-AVILTstCgtC~r~~a~m~keiE~~GiPv 367 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVD-AVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCC-EEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 67899999999996 55554432221 22223334443 34444 56666665 55777788899999
Q ss_pred EEeccC
Q 039732 106 TAFSPL 111 (214)
Q Consensus 106 i~~~~l 111 (214)
+-+..+
T Consensus 368 v~~~~~ 373 (431)
T TIGR01918 368 VHMCTV 373 (431)
T ss_pred EEEeec
Confidence 887664
No 118
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=38.60 E-value=2e+02 Score=24.12 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
.+.+...+..+.++=+|- +.+- .| +.+.+.++++.. |..+|+.-|-+..+ ++++++|+..|+.|=+
T Consensus 59 ~~~~~~~~~~~A~~~~VP-V~lHLDHg~~~e~i~~Ai~~G---ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEa 133 (284)
T PRK09195 59 TEYLLAIVSAAAKQYHHP-LALHLDHHEKFDDIAQKVRSG---VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEA 133 (284)
T ss_pred HHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcC---CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 344555555566654442 3332 22 567777777653 68888877765543 6899999999998855
No 119
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=38.35 E-value=1.3e+02 Score=26.60 Aligned_cols=118 Identities=11% Similarity=0.138 Sum_probs=64.7
Q ss_pred HHHHcCCccEEEecCCCHHHH-HHHHhcCCCC-CeeeecccCcccchHHHHHHHHhCCCeE---EEeccCCCCCCCCC-C
Q 039732 47 ECQRLGLTKFIGVSNFSSKKI-EALLAFSTIP-PSVNQVEMNPAWQQRQLREFCKSKSIIV---TAFSPLGAAGSSWG-T 120 (214)
Q Consensus 47 ~l~~~Gkir~iGiS~~~~~~l-~~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~gi~v---i~~~~l~~~G~L~~-~ 120 (214)
++.++-.||.+|+=+-+...+ .++.+..+.+ -+.+.+.+|+-+. .=--|.++|..+ ++++||. |+..+ +
T Consensus 171 ~~~~~~~iRryGFHGlS~~~va~~~a~~lg~~~~~~~~Iv~HLG~G---~Si~Ai~~GksvDTsmG~tpLe--Gl~mgtR 245 (404)
T TIGR00016 171 SWYKNHGIRRYGFHGTSHKYVTQRAAKILNKPLDDLNLIVCHLGNG---ASVCAVKNGKSIDTSMGFTPLE--GLMMGTR 245 (404)
T ss_pred HHHHhcCceEeeehHHHHHHHHHHHHHHhCCChhHcCEEEEEeCCC---ceeeeeeCCEEEEeCCCCCCcc--CCCCCCC
Confidence 455565677777765444332 2333322211 1223333333221 111233455555 3456665 44433 3
Q ss_pred CCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC-cEEeeC-CCCHHHHHHhhc
Q 039732 121 NQVMNNEALKQIADAHGKTVAQVCLRWIIEQG-AIVVAK-SFNKERLKENLD 170 (214)
Q Consensus 121 ~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~-~~vl~g-~~~~~~l~enl~ 170 (214)
........+..++++.+.|+.++ ...+..+. -.-+.| +++..+|.+..+
T Consensus 246 sG~lDp~~~~~l~~~~~~s~~e~-~~~Ln~~SGLlg~sG~s~D~Rel~~~~~ 296 (404)
T TIGR00016 246 SGDIDPAIISYLAETLGMSADDI-ENTLNKKSGLLGISGLSSDLRDIEDAYA 296 (404)
T ss_pred CCCCChHHHHHHHHhcCCCHHHH-HHHHhhcccceEecCCCCCHHHHHHHHH
Confidence 34455677888999999999884 44444444 667889 889999977654
No 120
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=38.07 E-value=26 Score=20.63 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCCCHHHHHHhhccccc
Q 039732 129 LKQIADAHGKTVAQVCLRWIIEQGAIVVAKSFNKERLKENLDIFDW 174 (214)
Q Consensus 129 l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~a~~~ 174 (214)
+.++|+..|+|++.+.-. ++.+ .-++..+.+++.+.++..++
T Consensus 2 i~dIA~~agvS~~TVSr~--ln~~--~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRV--LNGP--PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHHH--HTTC--SSSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHHH--HhCC--CCCCHHHHHHHHHHHHHHCC
Confidence 678999999999976554 4433 24455566667666665554
No 121
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=37.87 E-value=7.2 Score=34.84 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCC
Q 039732 44 AMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQV 123 (214)
Q Consensus 44 ~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~ 123 (214)
.-++|.++|-.-++|.+- +. ..+..+.+ .-|.+...+.-+.+++++||.++.+.-+.+ -++.
T Consensus 44 ~t~~L~~~G~~i~~gh~~---~n------i~~~~~VV---~s~Ai~~~NpEi~~A~e~~ipi~~r~e~La-elm~----- 105 (459)
T COG0773 44 MTQRLEALGIEIFIGHDA---EN------ILDADVVV---VSNAIKEDNPEIVAALERGIPVISRAEMLA-ELMR----- 105 (459)
T ss_pred HHHHHHHCCCeEeCCCCH---HH------cCCCceEE---EecccCCCCHHHHHHHHcCCCeEcHHHHHH-HHHh-----
Confidence 556677777776666542 21 11111111 222334456788999999999999877654 2221
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHHHhhcC---cEEeeC
Q 039732 124 MNNEALKQIADAHGKTVAQVCLRWIIEQG---AIVVAK 158 (214)
Q Consensus 124 ~~~~~l~~~a~~~~~s~~q~al~~~l~~~---~~vl~g 158 (214)
...--+++--||+|...-.++|++... .+.++|
T Consensus 106 --~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 106 --FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred --CCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 112223455689999999999999865 666666
No 122
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=37.64 E-value=2.4e+02 Score=23.56 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEec---CCCHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVS---NFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS---~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
.+.+...+..+.++=+| -+.+= ..+.+.+.++++. -|..+|+.-|-+..+ ++++++|+..|+.|=+
T Consensus 57 ~~~~~~~~~~~a~~~~V-PValHLDHg~~~e~i~~ai~~---GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEa 131 (282)
T TIGR01858 57 TEYIVALCSAASTTYNM-PLALHLDHHESLDDIRQKVHA---GVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEA 131 (282)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHc---CCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 34445555555544333 22222 2245666677665 368888877765543 6899999999999854
No 123
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=37.60 E-value=1.8e+02 Score=22.25 Aligned_cols=61 Identities=16% Similarity=-0.007 Sum_probs=37.7
Q ss_pred HHHcCCccEEEecCCCHHHH----HHHHhcCCCCCeeeecccCcccch----------HHHHHHHHhCCCeEEEe
Q 039732 48 CQRLGLTKFIGVSNFSSKKI----EALLAFSTIPPSVNQVEMNPAWQQ----------RQLREFCKSKSIIVTAF 108 (214)
Q Consensus 48 l~~~Gkir~iGiS~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~~~~~~~~~gi~vi~~ 108 (214)
+.+...|...|+++.+...+ ...+.....+..++++.-|-.... ..+++.++++|+.++..
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34556799999999876543 232322223345566666654221 57889999888776654
No 124
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=37.43 E-value=51 Score=20.90 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCC
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSNF 62 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~~ 62 (214)
.+...+-..|+.|+++|+|+.+..++.
T Consensus 26 ~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 26 ISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp --HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred cCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 335666777888999999999987764
No 125
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=37.38 E-value=1.2e+02 Score=27.35 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=26.2
Q ss_pred ccEEEec-CCCHHHHHHHHhcCCCCCeeeecccCc
Q 039732 54 TKFIGVS-NFSSKKIEALLAFSTIPPSVNQVEMNP 87 (214)
Q Consensus 54 ir~iGiS-~~~~~~l~~~~~~~~~~~~~~q~~~~~ 87 (214)
++.+||- |-+++.+.++++.. .++++|+.-+.
T Consensus 307 v~~VgVfv~~~~~~i~~i~~~~--~lD~vQLHG~e 339 (454)
T PRK09427 307 LRYVGVFRNADIEDIVDIAKQL--SLAAVQLHGDE 339 (454)
T ss_pred CCEEEEEeCCCHHHHHHHHHHc--CCCEEEeCCCC
Confidence 8899988 67889999998877 46899987643
No 126
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.34 E-value=3e+02 Score=24.55 Aligned_cols=126 Identities=10% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEecC-----CC-----------HHHHHHHHhcCCCC---CeeeecccCcccchHHH
Q 039732 34 VPLDYKGVWEAMEECQRLGLTKFIGVSN-----FS-----------SKKIEALLAFSTIP---PSVNQVEMNPAWQQRQL 94 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~Gkir~iGiS~-----~~-----------~~~l~~~~~~~~~~---~~~~q~~~~~~~~~~~~ 94 (214)
.....+++++.++.+++.| ++.|-+.+ +. .+.+.++.+..... .-+.+...++..-..++
T Consensus 179 rsr~~e~Vv~Ei~~l~~~G-~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~el 257 (455)
T PRK14335 179 ISRDLDAILQEIDVLSEKG-VREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDL 257 (455)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHH
Confidence 3567899999999999998 45554432 10 12233332211110 11222233343334788
Q ss_pred HHHHHhC--CCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhc--C----cEEeeC--CCCHHH
Q 039732 95 REFCKSK--SIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQ--G----AIVVAK--SFNKER 164 (214)
Q Consensus 95 ~~~~~~~--gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~--~----~~vl~g--~~~~~~ 164 (214)
++..++. |...+-. ++-+ | ....+..+-+.+...-..-+++.+... + ...|+| ..+.+.
T Consensus 258 l~~m~~~~~gc~~l~i-glQS-g---------sd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET~ed 326 (455)
T PRK14335 258 IATIAQESRLCRLVHL-PVQH-G---------SNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGFPGETEED 326 (455)
T ss_pred HHHHHhCCCCCCeEEE-ccCc-C---------CHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHH
Confidence 8888874 4444433 4433 2 335555554444444444456666654 3 446777 456777
Q ss_pred HHHhhcc
Q 039732 165 LKENLDI 171 (214)
Q Consensus 165 l~enl~a 171 (214)
+++.++.
T Consensus 327 f~~Tl~~ 333 (455)
T PRK14335 327 FEQTLDL 333 (455)
T ss_pred HHHHHHH
Confidence 7776664
No 127
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=37.30 E-value=78 Score=17.96 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHHhCCCHHHHHHHHHhh
Q 039732 121 NQVMNNEALKQIADAHGKTVAQVCLRWIIE 150 (214)
Q Consensus 121 ~~~~~~~~l~~~a~~~~~s~~q~al~~~l~ 150 (214)
.++...+....++++.|+|..|+.--|+-+
T Consensus 8 nPYPs~~ek~~L~~~tgls~~Qi~~WF~Na 37 (40)
T PF05920_consen 8 NPYPSKEEKEELAKQTGLSRKQISNWFINA 37 (40)
T ss_dssp SGS--HHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 456677889999999999999988777643
No 128
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=37.07 E-value=2.1e+02 Score=24.02 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCc-cEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 39 KGVWEAMEECQRLGLT-KFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gki-r~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
+.+...+..+.++=++ --+.+= .| +.+.+.++++. -|..+|+.-|-+..+ .+++++|+..|+.|-+
T Consensus 61 ~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEa 136 (286)
T PRK08610 61 YTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDA---GFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEA 136 (286)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3344555555544332 123333 23 56777777775 368888877765543 6899999999999955
No 129
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=36.98 E-value=3.2e+02 Score=24.77 Aligned_cols=98 Identities=10% Similarity=0.153 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHH-cCCcc--EEEecCCCHHHHHHHHhcCC-CCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccC
Q 039732 38 YKGVWEAMEECQR-LGLTK--FIGVSNFSSKKIEALLAFST-IPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 38 ~~e~~~~l~~l~~-~Gkir--~iGiS~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l 111 (214)
+..+.+++.+..+ .|+-+ ++-||.-+++.+.+-.+.+. .-..++++.++..-.. ..+.++|++.++.+++.-.+
T Consensus 218 v~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~ 297 (475)
T CHL00040 218 FLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAM 297 (475)
T ss_pred HHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEecccc
Confidence 4456777777554 46533 44444334455433322221 1235667766664433 67788888899999998888
Q ss_pred CCCCCCCCCCC-CCChHHHHHHHHHhC
Q 039732 112 GAAGSSWGTNQ-VMNNEALKQIADAHG 137 (214)
Q Consensus 112 ~~~G~L~~~~~-~~~~~~l~~~a~~~~ 137 (214)
. |.++.... -.....+.++.+-.|
T Consensus 298 ~--ga~~r~~~~Gis~~vl~KL~RLaG 322 (475)
T CHL00040 298 H--AVIDRQKNHGIHFRVLAKALRMSG 322 (475)
T ss_pred c--cccccCccCCCcHHHHHHHHHHcC
Confidence 7 44443222 223344555544443
No 130
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.97 E-value=2e+02 Score=24.15 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCccEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 39 KGVWEAMEECQRLGLTKFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
+.+...+..+.++=+| -+.+= .| +.+.+.++++. -|..+|+.-|-+..+ ++++++|+..|+.|=+
T Consensus 60 ~~~~~~~~~~a~~~~V-PValHLDH~~~~e~i~~ai~~---GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEa 133 (284)
T PRK12737 60 DYIVAIAEVAARKYNI-PLALHLDHHEDLDDIKKKVRA---GIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEA 133 (284)
T ss_pred HHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHc---CCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3344445555544444 23332 22 45666666665 367888877765543 6899999999999955
No 131
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=36.78 E-value=2.2e+02 Score=23.46 Aligned_cols=101 Identities=19% Similarity=0.122 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCccEEEecCCC--------H-HHHHHHHhc--CCCCCeeeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 41 VWEAMEECQRLGLTKFIGVSNFS--------S-KKIEALLAF--STIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir~iGiS~~~--------~-~~l~~~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
..+.++.+++..---.||+..++ . ..+..+... ++..+.+.|.-|+. ..-.+.++.|++.|+.+
T Consensus 112 a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~fd~-~~~~~~~~~~~~~gi~~---- 186 (272)
T TIGR00676 112 ASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLFFDN-DDYYRFVDRCRAAGIDV---- 186 (272)
T ss_pred HHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccccCH-HHHHHHHHHHHHcCCCC----
Confidence 44444444554223477777642 1 234444333 33557777887765 22257788999998765
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCCCHHHHHHhhccc
Q 039732 110 PLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSFNKERLKENLDIF 172 (214)
Q Consensus 110 ~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~a~ 172 (214)
|+-- |++ .+....-+++|.. ++|..=|+.+.+.++..
T Consensus 187 PIi~-Gi~-------------------p~~s~k~~~~~~~------~~Gv~vP~~~~~~l~~~ 223 (272)
T TIGR00676 187 PIIP-GIM-------------------PITNFKQLLRFAE------RCGAEIPAWLVKRLEKY 223 (272)
T ss_pred CEec-ccC-------------------CcCCHHHHHHHHh------ccCCCCCHHHHHHHHhc
Confidence 3333 443 1122222344444 55677777777776643
No 132
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=36.71 E-value=1.1e+02 Score=21.15 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=36.8
Q ss_pred cCCCHHHHHHHHhcCCCCCeeeecccCcc---cchHHHHHHHHhCCCeEEEeccCCC
Q 039732 60 SNFSSKKIEALLAFSTIPPSVNQVEMNPA---WQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 60 S~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
|.++...+.++++..- .+++|+....+ .....+.++|+++|+.++..+. .+
T Consensus 3 ~~~~~~~~~~li~~~a--~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGA--VDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTS--CSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCC--CCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 4567888888888653 47777765443 2237899999999999999886 54
No 133
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.53 E-value=1.4e+02 Score=24.55 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCCcccccCCCcC-CC-CCCCHHHHHHHHHHHHHcCCccEEEecCCCHHH-------HHHHHhcCCCCCe
Q 039732 9 LYLIHWPISAKPSEKLQSLIPKE-DL-VPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKK-------IEALLAFSTIPPS 79 (214)
Q Consensus 9 l~~lH~~~~~~~~~~~~~~~~~~-~~-~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~-------l~~~~~~~~~~~~ 79 (214)
-+++|-|-... +|+..+. ++ .....+++.+.+++.++. ---|+|+.||-... ++.+.+..+
T Consensus 79 evlih~PmeP~-----~~~~~e~gtL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk---- 148 (250)
T COG2861 79 EVLIHMPMEPF-----SYPKIEPGTLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGSRFTSNEDAMEKLMEALK---- 148 (250)
T ss_pred EEEEeccCCcc-----cCCCCCCCCcccCCCHHHHHHHHHHHHhh-CccceeehhhhhhhhcCcHHHHHHHHHHHH----
Confidence 35788875332 2343222 22 245577889888888876 45688999885333 223322221
Q ss_pred eeecccCcccch------HHHHHHHHhCCCeEEEeccCCC
Q 039732 80 VNQVEMNPAWQQ------RQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 80 ~~q~~~~~~~~~------~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
..+++.-+ .-.-..+++.||.++....+.-
T Consensus 149 ----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~rdvfLD 184 (250)
T COG2861 149 ----ERGLYFLDSGTIANSLAGKIAKEIGVPVIKRDVFLD 184 (250)
T ss_pred ----HCCeEEEcccccccchhhhhHhhcCCceeeeeeeec
Confidence 11222111 2334556778888888777765
No 134
>PRK12397 propionate kinase; Reviewed
Probab=36.52 E-value=1.6e+02 Score=26.03 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHcCCccEEEecCCCHHHH-HHHHhcCCCC-CeeeecccCcccchHHHHHHHHhCCCeE---EEeccCCCCCCCCC-
Q 039732 46 EECQRLGLTKFIGVSNFSSKKI-EALLAFSTIP-PSVNQVEMNPAWQQRQLREFCKSKSIIV---TAFSPLGAAGSSWG- 119 (214)
Q Consensus 46 ~~l~~~Gkir~iGiS~~~~~~l-~~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~gi~v---i~~~~l~~~G~L~~- 119 (214)
.++.++-.||.+|+=+-+...+ +++.+..+.+ -+.+.+.+|+-+. .=--|.++|..+ ++++|+. |...+
T Consensus 165 ~~~~~~~gIRryGFHGlS~~yva~~~a~~lg~~~~~~~lIv~HLG~G---aSi~Ai~~GksvDtsmG~tPle--Gl~mgt 239 (404)
T PRK12397 165 WRYYAELGIRRYGFHGTSHKYVSGVLAEKLGVPLSALRVICCHLGNG---SSICAIKNGRSVNTSMGFTPQS--GVMMGT 239 (404)
T ss_pred HHHHHhcCceEeeeeHHHHHHHHHHHHHHhCCChhHCCEEEEEeCCC---cchheeeCCEEEEcCCCCCCCC--CCCCCC
Confidence 4556664458888765544333 3333332211 1333334443222 222334566665 4456665 55543
Q ss_pred CCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC-cEEeeC-CCCHHHHHHhhc
Q 039732 120 TNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG-AIVVAK-SFNKERLKENLD 170 (214)
Q Consensus 120 ~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~-~~vl~g-~~~~~~l~enl~ 170 (214)
+........+..++++.+.++.+ ....+..+. -.-+.| +++...|.+..+
T Consensus 240 RsG~lDp~~l~~l~~~~~~s~~e-~~~~Lnk~SGLlg~sG~s~D~R~l~~~~~ 291 (404)
T PRK12397 240 RSGDIDPSILPWIAQREGKTPQQ-LNQLLNNESGLLGVSGVSSDYRDVEQAAN 291 (404)
T ss_pred CCCCCChHHHHHHHHhcCCCHHH-HHHHHhccccceEecCCCCCHHHHHHHHH
Confidence 33455667888899999999887 445555554 667889 788988877654
No 135
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=36.32 E-value=1e+02 Score=27.13 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcC-CccEEEecCC---CHHHHHHHHhcCCCCCeeeec---ccCcccchHHHHHHHHhCCCeEEEe
Q 039732 36 LDYKGVWEAMEECQRLG-LTKFIGVSNF---SSKKIEALLAFSTIPPSVNQV---EMNPAWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~G-kir~iGiS~~---~~~~l~~~~~~~~~~~~~~q~---~~~~~~~~~~~~~~~~~~gi~vi~~ 108 (214)
.....+++.+..|.++| .|.|+.+-.. +.+.+++++..-.+ ...+|. +.....+-.++-+.|+++|+.+..-
T Consensus 99 iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~-LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 99 IEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTI-LVSIMHANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred cccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCce-EEEEEecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 33567999999998889 7999999865 56777777664322 122222 2223333378999999999877655
Q ss_pred ccCC
Q 039732 109 SPLG 112 (214)
Q Consensus 109 ~~l~ 112 (214)
..-+
T Consensus 178 AvQa 181 (386)
T COG1104 178 AVQA 181 (386)
T ss_pred hhhh
Confidence 4444
No 136
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=36.19 E-value=3.1e+02 Score=24.40 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=53.4
Q ss_pred EEEEecCCCCCCCcccccCCCcCCC--CCC----CHHHHHHHHHHHHHc----CCccEEEecC-----CCHHHHHHHHhc
Q 039732 9 LYLIHWPISAKPSEKLQSLIPKEDL--VPL----DYKGVWEAMEECQRL----GLTKFIGVSN-----FSSKKIEALLAF 73 (214)
Q Consensus 9 l~~lH~~~~~~~~~~~~~~~~~~~~--~~~----~~~e~~~~l~~l~~~----Gkir~iGiS~-----~~~~~l~~~~~~ 73 (214)
-+++|.|-... .|.|+.-.... ... ..+.+.+.++...+. ..|..|-+.+ .+++.+.++++.
T Consensus 52 ~LYvHIPfC~~---~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~ 128 (453)
T PRK13347 52 SLYLHVPFCRS---LCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAA 128 (453)
T ss_pred EEEEEeCCccc---cCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHH
Confidence 57899886332 23454211110 001 123444444443332 2466666653 457777777765
Q ss_pred CC----CCC-eeeecccCcccchHHHHHHHHhCCCeEEEeccC
Q 039732 74 ST----IPP-SVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 74 ~~----~~~-~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 111 (214)
.. +.. .-+-++.|+..-..+.++.+++.|+..+..+.=
T Consensus 129 i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQ 171 (453)
T PRK13347 129 LRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQ 171 (453)
T ss_pred HHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence 43 111 123344555444589999999999887776544
No 137
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=36.13 E-value=71 Score=26.69 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=39.5
Q ss_pred eEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhc
Q 039732 8 DLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAF 73 (214)
Q Consensus 8 Dl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~ 73 (214)
++++|-.|...-+ +....++++.+.++.++|. +.|=+|+|..+.++.+++.
T Consensus 156 ~lliLDEPt~GLD--------------p~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 156 ELLILDEPTSGLD--------------PESRREIWELLRELAKEGG-VTILLSTHILEEAEELCDR 206 (293)
T ss_pred CEEEECCCCcCCC--------------HHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCCE
Confidence 5666666654332 4457899999999999997 6788999999999888653
No 138
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.03 E-value=2.2e+02 Score=22.54 Aligned_cols=99 Identities=7% Similarity=-0.118 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHH---HHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIE---ALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAA 114 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~---~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~ 114 (214)
.+++.+..+.|.+. -|+.+=|+.-++..++ ++.+.. +.++---=+++ ..+..+.+.+.|..++.. |-..
T Consensus 15 ~~~a~~ia~al~~g-Gi~~iEit~~tp~a~~~I~~l~~~~---~~~~vGAGTVl--~~e~a~~ai~aGA~FivS-P~~~- 86 (201)
T PRK06015 15 VEHAVPLARALAAG-GLPAIEITLRTPAALDAIRAVAAEV---EEAIVGAGTIL--NAKQFEDAAKAGSRFIVS-PGTT- 86 (201)
T ss_pred HHHHHHHHHHHHHC-CCCEEEEeCCCccHHHHHHHHHHHC---CCCEEeeEeCc--CHHHHHHHHHcCCCEEEC-CCCC-
Confidence 56667766666655 4678888765554443 333322 22111111111 246778888888888773 3322
Q ss_pred CCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCCCHHHHHHhhcc
Q 039732 115 GSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSFNKERLKENLDI 171 (214)
Q Consensus 115 G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~a 171 (214)
+.+ ++++.+++...+||+.||.++....++
T Consensus 87 ------------~~v---------------i~~a~~~~i~~iPG~~TptEi~~A~~~ 116 (201)
T PRK06015 87 ------------QEL---------------LAAANDSDVPLLPGAATPSEVMALREE 116 (201)
T ss_pred ------------HHH---------------HHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 333 444445555566666666666666654
No 139
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=36.00 E-value=1.6e+02 Score=24.75 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCc-cEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 39 KGVWEAMEECQRLGLT-KFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gki-r~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
+.+...+..+.++=++ --+.+- .| +.+.+.++++. -|..+|+.-|-+..+ ++++++|+..|+.|-+
T Consensus 61 ~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~---GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEa 136 (285)
T PRK07709 61 KTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDA---GFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEA 136 (285)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4444445555543222 123333 23 45677777765 368888877765443 6899999999999955
No 140
>PHA02128 hypothetical protein
Probab=36.00 E-value=1.3e+02 Score=21.31 Aligned_cols=71 Identities=7% Similarity=0.265 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhc-----------------CC-CCC-eeeecccCcccc--hHHHHH
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAF-----------------ST-IPP-SVNQVEMNPAWQ--QRQLRE 96 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~-----------------~~-~~~-~~~q~~~~~~~~--~~~~~~ 96 (214)
..++++...++..+|-+|-|-...-+...+..++.. +. +++ .+-..+|.+..+ .+++++
T Consensus 59 t~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiyd 138 (151)
T PHA02128 59 TTGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYD 138 (151)
T ss_pred cchHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHh
Confidence 346788888999999999998876665555554432 11 222 111235666554 378999
Q ss_pred HHHhCCCeEEEe
Q 039732 97 FCKSKSIIVTAF 108 (214)
Q Consensus 97 ~~~~~gi~vi~~ 108 (214)
++-.+|+.++.|
T Consensus 139 wagthgvefvim 150 (151)
T PHA02128 139 WAGTHGVEFVIM 150 (151)
T ss_pred hcccCceEEEEe
Confidence 999999999876
No 141
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=35.98 E-value=2.2e+02 Score=22.59 Aligned_cols=116 Identities=9% Similarity=0.104 Sum_probs=60.5
Q ss_pred CHHHHHHHHhcCCCCCeeeecccCcccch---HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCC-
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGK- 138 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~- 138 (214)
..+.++...+..+++..++.+....-... ...+..+++.|+..++.+.+.. . ........+|.+.|+
T Consensus 44 ~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~~vv~G~i~s-d--------~~~~~~e~v~~~~gl~ 114 (218)
T TIGR03679 44 NIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGVEGIVTGAIAS-R--------YQKSRIERICEELGLK 114 (218)
T ss_pred CHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEECCccc-H--------hHHHHHHHHHHhCCCe
Confidence 44556666777776555554442100011 2334444555999888877764 1 124555567776654
Q ss_pred --------CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCC
Q 039732 139 --------TVAQVCLRWIIEQG-AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQHR 191 (214)
Q Consensus 139 --------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~ 191 (214)
+..++.-. ....+ ..+|+.+.+ ..|.+. -++.+++.+.++.|.++.+++
T Consensus 115 ~~~PLw~~~~~el~~~-~~~~G~~~~i~~v~~-~~l~~~--~lG~~~~~~~~~~l~~l~~~~ 172 (218)
T TIGR03679 115 VFAPLWGRDQEEYLRE-LVERGFRFIIVSVSA-YGLDES--WLGREIDEKYIEKLKALNKRY 172 (218)
T ss_pred EEeehhcCCHHHHHHH-HHHCCCEEEEEEEec-CCCChH--HCCCccCHHHHHHHHHHHhhc
Confidence 33443332 33445 444444432 233321 234578888888887765543
No 142
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=35.87 E-value=63 Score=24.52 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEAL 70 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~ 70 (214)
..+++++++.+++.| ++-|+|++.....+.+.
T Consensus 114 t~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~ 145 (177)
T cd05006 114 SPNVLKALEAAKERG-MKTIALTGRDGGKLLEL 145 (177)
T ss_pred CHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhh
Confidence 478999999999998 89999998765555444
No 143
>PRK13753 dihydropteroate synthase; Provisional
Probab=35.62 E-value=2.6e+02 Score=23.36 Aligned_cols=67 Identities=6% Similarity=0.011 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCC
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
..+...+..+++.+. .|.|-++.++.++++++.. +. .++-+. -+. ...+.+.+.+.+++++.|...+
T Consensus 63 ~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-ad-iINDVs--g~~-d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 63 RRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRG-VG-YLNDIQ--GFP-DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred HHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC-CC-EEEeCC--CCC-chHHHHHHHHcCCCEEEEecCC
Confidence 345578888887753 4888899999999999863 32 233332 222 5788899999999999987764
No 144
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.50 E-value=1.6e+02 Score=22.07 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=37.0
Q ss_pred ccEEEecCCC--HHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCC
Q 039732 54 TKFIGVSNFS--SKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 54 ir~iGiS~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
+.-+|...|+ ...+..++..++. +++-. .++....+.+..+.++++.++..|.+.+
T Consensus 17 vak~GlDgHd~gakvia~~l~d~Gf--eVi~~--g~~~tp~e~v~aA~~~dv~vIgvSsl~g 74 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGF--EVINL--GLFQTPEEAVRAAVEEDVDVIGVSSLDG 74 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCc--eEEec--CCcCCHHHHHHHHHhcCCCEEEEEeccc
Confidence 3446766774 4557777777653 44422 2233347788888889999999888886
No 145
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.41 E-value=2.4e+02 Score=22.73 Aligned_cols=28 Identities=0% Similarity=-0.175 Sum_probs=19.9
Q ss_pred HHHHHhhcCcEEeeCCCCHHHHHHhhcc
Q 039732 144 CLRWIIEQGAIVVAKSFNKERLKENLDI 171 (214)
Q Consensus 144 al~~~l~~~~~vl~g~~~~~~l~enl~a 171 (214)
.++++.+++...+||+.|+.++.+.++.
T Consensus 104 v~~~~~~~~i~~iPG~~TpsEi~~A~~~ 131 (222)
T PRK07114 104 IAKVCNRRKVPYSPGCGSLSEIGYAEEL 131 (222)
T ss_pred HHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 5566666666777777777777777765
No 146
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.39 E-value=2.3e+02 Score=22.49 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHh---cCCCCCeeeecccCc--------------ccchHHHHHHHHhC
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLA---FSTIPPSVNQVEMNP--------------AWQQRQLREFCKSK 101 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~---~~~~~~~~~q~~~~~--------------~~~~~~~~~~~~~~ 101 (214)
.+.++.+.+.... .+..+++......++..++ ..++....+-++.|. +..-.+.+.++++.
T Consensus 43 ~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~ 120 (237)
T PF00682_consen 43 FEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL 120 (237)
T ss_dssp HHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc
Confidence 3445555555555 4445566566666666444 333332333333443 11125678889999
Q ss_pred CCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC--cEEe---eCCCCHHHHHHhhcccc
Q 039732 102 SIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG--AIVV---AKSFNKERLKENLDIFD 173 (214)
Q Consensus 102 gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~--~~vl---~g~~~~~~l~enl~a~~ 173 (214)
|..+...-.... ....+.+.++++. +...+ ...| .|.-+|+++.+.+..+.
T Consensus 121 g~~v~~~~~~~~---------~~~~~~~~~~~~~------------~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 121 GYEVAFGCEDAS---------RTDPEELLELAEA------------LAEAGADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp TSEEEEEETTTG---------GSSHHHHHHHHHH------------HHHHT-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred CCceEeCccccc---------cccHHHHHHHHHH------------HHHcCCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 988833222221 1122333333222 11113 2233 47888888888777654
No 147
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=35.03 E-value=1.9e+02 Score=26.69 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHH-cCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 36 LDYKGVWEAMEECQR-LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~-~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
.+.-+++++|..+++ .++|.-+|+.+.. ..+..+.+..++ .+.+..|+--.-....+..+++.|+.++.-.
T Consensus 91 ~s~~Dil~al~~a~~~~~~iavv~~~~~~-~~~~~~~~~l~~--~i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~ 162 (538)
T PRK15424 91 PSGFDVMQALARARKLTSSIGVVTYQETI-PALVAFQKTFNL--RIEQRSYVTEEDARGQINELKANGIEAVVGA 162 (538)
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCC--ceEEEEecCHHHHHHHHHHHHHCCCCEEEcC
Confidence 446788899988876 5688888888764 445556565543 5666666554444788899999999988743
No 148
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.96 E-value=1.3e+02 Score=24.05 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCC---ccEEEecC-CCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEE
Q 039732 39 KGVWEAMEECQRLGL---TKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTA 107 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gk---ir~iGiS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 107 (214)
....+.+++++++-. =-.+|..+ .+.++++.+++.. ..|.+ ++ ....+++++|+++|+.++.
T Consensus 49 ~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG-A~Fiv-----sP-~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 49 PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG-AQFIV-----SP-SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC-CCEEE-----CC-CCCHHHHHHHHHcCCCEEC
Confidence 345556666665421 13577776 4677777777654 22222 11 1237899999999998876
No 149
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.81 E-value=1.9e+02 Score=25.73 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC------CCCeeeecccCcccc--hHHHHHHHHhCCCeEEEecc
Q 039732 43 EAMEECQRLGLTKFIGVSNFSSKKIEALLAFST------IPPSVNQVEMNPAWQ--QRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 43 ~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~------~~~~~~q~~~~~~~~--~~~~~~~~~~~gi~vi~~~~ 110 (214)
+....+-+.|-+..+|..+.+++.+++.+...+ -++-+|.+ .+.-++ +...++.+.++||.++..+.
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 334456689999999999999999887766542 23444443 222222 25789999999998877654
No 150
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.75 E-value=1.6e+02 Score=20.52 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch---HHHHHHHHhCCC
Q 039732 40 GVWEAMEECQRLGL-TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSI 103 (214)
Q Consensus 40 e~~~~l~~l~~~Gk-ir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi 103 (214)
+..=...-++..|. +.++| ++.+++.+.+.+... +|+++.+.++..... .++++.+++.+-
T Consensus 15 G~~~~~~~l~~~G~~V~~lg-~~~~~~~l~~~~~~~--~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~ 79 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLG-VDVPPEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAGL 79 (119)
T ss_pred HHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHcCC
Confidence 33333344667776 56778 557777777766665 567777776643332 677788887743
No 151
>PLN02591 tryptophan synthase
Probab=34.47 E-value=79 Score=25.93 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhcCC---CCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHH
Q 039732 61 NFSSKKIEALLAFST---IPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADA 135 (214)
Q Consensus 61 ~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~ 135 (214)
+.+.+.+-+++...+ -.|.++|..||+..+- ...++.|++.|+. |++-..-+..+...+.+.|++
T Consensus 60 G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~----------GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 60 GTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVH----------GLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCC----------EEEeCCCCHHHHHHHHHHHHH
Q ss_pred hCCCHHHHHHHHHhhcCcEEeeCCCCHHHHHHhhcccc
Q 039732 136 HGKTVAQVCLRWIIEQGAIVVAKSFNKERLKENLDIFD 173 (214)
Q Consensus 136 ~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~a~~ 173 (214)
+|+.+.. .+.-+++.++++...+...
T Consensus 130 ~gl~~I~------------lv~Ptt~~~ri~~ia~~~~ 155 (250)
T PLN02591 130 NGIELVL------------LTTPTTPTERMKAIAEASE 155 (250)
T ss_pred cCCeEEE------------EeCCCCCHHHHHHHHHhCC
No 152
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=34.36 E-value=1.4e+02 Score=19.90 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 40 GVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 40 e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
.+.+.|...++.|++ -.|+ ..+.+.+...+.+..++--..+.......+..+|.+++|.++-..
T Consensus 2 ~i~~~l~~a~~~~~l-v~G~-----~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 2 KIYKLLKLARKAGRL-VKGI-----KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHHSEE-EESH-----HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHHhcCCE-EEch-----HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 355667777888874 4454 666677776665555554444443333448889999999997643
No 153
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=34.33 E-value=1.9e+02 Score=21.26 Aligned_cols=59 Identities=20% Similarity=0.117 Sum_probs=34.4
Q ss_pred CCccEEEecCCCHHH----HHHHHhcCCCCCeeeecccCcccc----h------HHHHHHHHhCCCeEEEecc
Q 039732 52 GLTKFIGVSNFSSKK----IEALLAFSTIPPSVNQVEMNPAWQ----Q------RQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 52 Gkir~iGiS~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~----~------~~~~~~~~~~gi~vi~~~~ 110 (214)
-.+...|+++.+... +...+...+....++++.-|-... + ..+++.+++++..++-.++
T Consensus 37 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 37 VTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred eEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 346777888776544 333333333333455555553221 1 5788888888888877654
No 154
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=34.30 E-value=1.6e+02 Score=20.32 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEe
Q 039732 42 WEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 42 ~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~ 108 (214)
-.+|...++.|++. .| ..++.+.+...+.+..++-...+. +....+..+|.+++|+++.|
T Consensus 5 ~~~l~~a~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 5 NRELRVAVDTGKVI-LG-----SKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHcCCEE-Ec-----HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 34567777788762 23 345556666555444444333322 22367888999999998776
No 155
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=33.33 E-value=1.9e+02 Score=24.74 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCc-cEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCC
Q 039732 42 WEAMEECQRLGLT-KFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 42 ~~~l~~l~~~Gki-r~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
++.|.+++++-.| -+.|=|-++.+....++.... .+++|+....+..-.++++.|+++|+.++..+.+.+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a--~dvi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~es 243 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGA--ADVAVLKVAPLGGVRAALDIAEQIGLPVVVSSALDT 243 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEEeCcchhCCHHHHHHHHHHcCCcEEEeCCccc
Confidence 4556666655333 244555566777777766542 477777766655556777888999999888776654
No 156
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=33.31 E-value=2.7e+02 Score=22.76 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=38.6
Q ss_pred EEecCCCHHHHHHHHhcCCCCCeeeecccCccc-chHHHHHHHHhCCCeEEEeccCCC
Q 039732 57 IGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW-QQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 57 iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
|.|=+++++.++++++.+.-...++-+.....+ ....+++.+++.|..++.+..-..
T Consensus 73 iSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~ 130 (252)
T cd00740 73 LMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQ 130 (252)
T ss_pred EEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCC
Confidence 666689999999999974223445544432211 236788999999999999865433
No 157
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=33.23 E-value=2.4e+02 Score=22.22 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHhhcCcEEeeCCCCHHHHHHhhccc-c---c----cCCHHHHHHHhccC
Q 039732 145 LRWIIEQGAIVVAKSFNKERLKENLDIF-D---W----ALTDHDYDKINQIP 188 (214)
Q Consensus 145 l~~~l~~~~~vl~g~~~~~~l~enl~a~-~---~----~L~~~~~~~l~~~~ 188 (214)
.+++...+..+++|+.|++++.+..+.- + + .+..+.++.+.+..
T Consensus 97 ~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 97 IRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred HHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 3444555677888888888887775431 1 1 34455555555544
No 158
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.00 E-value=2.8e+02 Score=23.23 Aligned_cols=42 Identities=7% Similarity=0.031 Sum_probs=30.4
Q ss_pred CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA 107 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 107 (214)
+.+.+.++++. -|..+|+.-|-+..+ ++++++|+..|+.|=+
T Consensus 86 ~~e~i~~ai~~---GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEa 133 (284)
T PRK12857 86 DFEQVMKCIRN---GFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEA 133 (284)
T ss_pred CHHHHHHHHHc---CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 44666677665 367888877655443 6899999999998854
No 159
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.98 E-value=3.2e+02 Score=23.55 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcC--C--ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccc------h----HHHHHHHH
Q 039732 37 DYKGVWEAMEECQRLG--L--TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQ------Q----RQLREFCK 99 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~G--k--ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~ 99 (214)
..+++++++.+..+.+ + ++|+=+. |.+.+.+.++.+... ....++-++||.... . .......+
T Consensus 232 ~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 232 PLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4678888887776654 2 4455555 455677777766654 344677788887542 1 35677788
Q ss_pred hCCCeEEEeccCCCCCCC
Q 039732 100 SKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 100 ~~gi~vi~~~~l~~~G~L 117 (214)
++|+.+..+...+. .+.
T Consensus 312 ~~gi~v~vR~~~G~-di~ 328 (349)
T PRK14463 312 DKHVTVITRSSRGS-DIS 328 (349)
T ss_pred HCCceEEEeCCCCc-chh
Confidence 99999999988876 443
No 160
>PRK07058 acetate kinase; Provisional
Probab=32.81 E-value=1.4e+02 Score=26.35 Aligned_cols=119 Identities=12% Similarity=0.012 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHH-HHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeE---EEeccCCCCCCC
Q 039732 42 WEAMEECQRLGLTKFIGVSNFSSKKI-EALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIV---TAFSPLGAAGSS 117 (214)
Q Consensus 42 ~~~l~~l~~~Gkir~iGiS~~~~~~l-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v---i~~~~l~~~G~L 117 (214)
|..=.++.++ .||.+|+=+-+...+ .++.+..+..-+...+.+|+-+. .=--|.++|..+ +++.||.+ =..
T Consensus 163 YalP~~~~~~-giRRYGfHGlS~~~va~~~a~~l~~~~~~~~Iv~HLG~G---~Si~Ai~~GksvDtsmG~tpLeG-L~m 237 (396)
T PRK07058 163 FAIPRALHDE-GIKRYGFHGLSYKFVAGELRRRAPELARGKVVAAHLGSG---ASLCALDAGKSRDTSMGFSTLDG-IPM 237 (396)
T ss_pred cCCCHHHHHh-CCCccCCcHHHHHHHHHHHHHhcCCcccCCEEEEEeCCC---ceeeeeeCCEEEEcCCCCCCcCC-Ccc
Confidence 3333456677 799999976554443 33333321111333334444322 222344566665 44567653 123
Q ss_pred CCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC-cEEeeC-CCCHHHHH
Q 039732 118 WGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG-AIVVAK-SFNKERLK 166 (214)
Q Consensus 118 ~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~-~~vl~g-~~~~~~l~ 166 (214)
..+........+..++++.+.|+.++ ...+..++ -.-+.| +++...|.
T Consensus 238 gtRsG~ldp~~l~~l~~~~~~s~~el-~~~Ln~~SGLlg~sG~s~D~R~l~ 287 (396)
T PRK07058 238 ATRCGALDPGVVLHLLKQEGMSLDEV-EDLLYHRSGLLGVSGISGDTRDLL 287 (396)
T ss_pred cCCCCCCChHHHHHHHHhcCCCHHHH-HHHHhcccCcEEecCCCCCHHHHh
Confidence 33444556678888999999999884 44444444 667789 77888885
No 161
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.72 E-value=2.4e+02 Score=24.05 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccC
Q 039732 41 VWEAMEECQRLGL-TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 41 ~~~~l~~l~~~Gk-ir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 111 (214)
-++.+.+++++-. =-+.|-|-++...+..+++..- .+++|+....+. ...++...|+.+|+.++..+..
T Consensus 216 d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 216 DLIDHAELQKLLKTPICLDESIQSAEDARKAIELGA--CKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCC--CCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 3666777766533 2366777788888888887653 467777665443 2378899999999998764433
No 162
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=32.44 E-value=53 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHH
Q 039732 43 EAMEECQRLGLTKFIGVSNFSSKKIE 68 (214)
Q Consensus 43 ~~l~~l~~~Gkir~iGiS~~~~~~l~ 68 (214)
+...+++++|| ++.|+|..+.+.+-
T Consensus 85 eeI~~~v~~GK-~AFGft~~hie~vv 109 (117)
T PF10941_consen 85 EEIRKEVAEGK-KAFGFTAQHIEQVV 109 (117)
T ss_pred HHHHHHHHcCC-eeeeccHHHHHHHH
Confidence 34557788899 68888876655543
No 163
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=32.19 E-value=1.7e+02 Score=22.25 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST 75 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~ 75 (214)
.++.+.|+.|+++| ++-.-+||.+...+...++..+
T Consensus 95 ~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 95 PDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCC
Confidence 56677777787776 4455567766666666666554
No 164
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=32.14 E-value=2.1e+02 Score=24.95 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC-CCCeeeecccCccc-ch-HHHHHHHHhCCCeEEEeccCCCCCC
Q 039732 40 GVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST-IPPSVNQVEMNPAW-QQ-RQLREFCKSKSIIVTAFSPLGAAGS 116 (214)
Q Consensus 40 e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~-~~-~~~~~~~~~~gi~vi~~~~l~~~G~ 116 (214)
+-..++.++.+.|.+.|+-.---. +.-..+....+ -.|.. .|.... .. +.+++.|+++||.+|+.+ |-
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~La-E~tma~~~~~~~~~p~~---gY~~~~~~~L~~~L~~~~~~gIkvI~Na-----Gg 80 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLA-ERTMAILARAKRKDPTK---GYAPDFVRDLRPLLPAAAEKGIKVITNA-----GG 80 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHHHhhCCCC---CchHHHHHHHHHHHHHHHhCCCCEEEeC-----CC
Confidence 345667778889999998763222 21111111111 11111 122211 12 678999999999999863 22
Q ss_pred CCCCCCCCChHHHHHHHHHhCCC
Q 039732 117 SWGTNQVMNNEALKQIADAHGKT 139 (214)
Q Consensus 117 L~~~~~~~~~~~l~~~a~~~~~s 139 (214)
+ ++..-.+.+.+++++.|++
T Consensus 81 ~---np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 81 L---NPAGCADIVREIARELGLS 100 (362)
T ss_pred C---CHHHHHHHHHHHHHhcCCC
Confidence 1 2222456777778777764
No 165
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.02 E-value=2.8e+02 Score=22.64 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcC-CccEEEecCCCH------HHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEE-E
Q 039732 36 LDYKGVWEAMEECQRLG-LTKFIGVSNFSS------KKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVT-A 107 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~G-kir~iGiS~~~~------~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi-~ 107 (214)
.+...+++.+.+++++. .+..+..+-+++ +...+.+..+++ +.+-++.-+.....++++.|+++|+..+ .
T Consensus 69 ~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGv--dgviipDlp~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 69 MTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGV--DGVLVADLPLEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCC--CEEEECCCChHHHHHHHHHHHHCCCcEEEE
Confidence 34567788888888653 333334443333 443333344443 3333333333334678888888887754 4
Q ss_pred eccC
Q 039732 108 FSPL 111 (214)
Q Consensus 108 ~~~l 111 (214)
.+|-
T Consensus 147 v~P~ 150 (256)
T TIGR00262 147 VAPN 150 (256)
T ss_pred ECCC
Confidence 4443
No 166
>PRK12379 propionate/acetate kinase; Provisional
Probab=31.95 E-value=2.4e+02 Score=24.98 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=70.4
Q ss_pred HHHHHHcCCccEEEecCCCHHHH-HHHHhcCCCC-CeeeecccCcccchHHHHHHHHhCCCeE---EEeccCCCCCCCCC
Q 039732 45 MEECQRLGLTKFIGVSNFSSKKI-EALLAFSTIP-PSVNQVEMNPAWQQRQLREFCKSKSIIV---TAFSPLGAAGSSWG 119 (214)
Q Consensus 45 l~~l~~~Gkir~iGiS~~~~~~l-~~~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~gi~v---i~~~~l~~~G~L~~ 119 (214)
=..+.++-.||.+|+=+-+...+ +++.+..+.+ -+.+.+.+|+-+. .=--|.++|..+ ++++|+. |...+
T Consensus 160 P~~~~~~~giRryGFHGlS~~~va~~~a~~lg~~~~~~~lIv~HLG~G---~Si~Ai~~GksvDtsmG~tPle--Gl~mg 234 (396)
T PRK12379 160 PWEYYEELGVRRYGFHGTSHRYVSQRAHSLLNLDEDDSGLVVAHLGNG---ASICAVRNGQSVDTSMGMTPLE--GLMMG 234 (396)
T ss_pred CHHHHHhCCceEeeehHHHHHHHHHHHHHHhCCChhHCCEEEEEeCCC---cchheeeCCEEEEeCCCCCccc--CCCCC
Confidence 34466665688888876554333 3333333211 1333444444322 222344667666 3446665 54443
Q ss_pred -CCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC-cEEeeC-CCCHHHHHHhhc
Q 039732 120 -TNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG-AIVVAK-SFNKERLKENLD 170 (214)
Q Consensus 120 -~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~-~~vl~g-~~~~~~l~enl~ 170 (214)
+........+..++++.+.|+.+ ....+..+. -.-+.| +++..+|.+..+
T Consensus 235 tRsG~ldp~~l~~l~~~~~~s~~e-l~~~Lnk~SGLlg~sG~s~D~R~v~~~~~ 287 (396)
T PRK12379 235 TRSGDVDFGAMAWIASQTGQTLGD-LERVVNKESGLLGISGLSSDLRVLEKAWH 287 (396)
T ss_pred CCCCCCChHHHHHHHHhcCCCHHH-HHHHHhccccceEecCCCCCHHHHHHHHH
Confidence 33445667888899999999988 455555555 677889 788888877654
No 167
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=31.73 E-value=1.2e+02 Score=25.31 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=37.5
Q ss_pred cEEEecCC-C--HHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEecc
Q 039732 55 KFIGVSNF-S--SKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 55 r~iGiS~~-~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 110 (214)
..||.|-| + +..+.+.+...+- .+.-+.+|++..+.++.....+.||.|.++.-
T Consensus 44 ~rIa~cLHle~kTA~L~~tL~a~GA--eV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~g 100 (268)
T PF05221_consen 44 ARIAGCLHLEAKTAVLAETLKALGA--EVRWTGSNPLSTQDDVAAALAEEGIPVFAWKG 100 (268)
T ss_dssp EEEEEES--SHHHHHHHHHHHHTTE--EEEEEESSTTT--HHHHHHHHHTTEEEEE-TT
T ss_pred CEEEEEEechHHHHHHHHHHHHcCC--eEEEecCCCcccchHHHHHhccCCceEEEeCC
Confidence 35677766 3 3446666666653 56677899999999999999999999999753
No 168
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=31.71 E-value=3.2e+02 Score=23.17 Aligned_cols=22 Identities=14% Similarity=-0.056 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEeccCCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
.+.++.+++.|+.+...+++..
T Consensus 223 ~~ai~~L~~~Gi~v~~qtvllk 244 (321)
T TIGR03821 223 ADALAKLRNAGITLLNQSVLLR 244 (321)
T ss_pred HHHHHHHHHcCCEEEecceeeC
Confidence 5677788888888888877776
No 169
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.68 E-value=3.1e+02 Score=22.94 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCccEEEecCCCHH-------HHHHHHhcCCCCCeeeecccCcccc-------h-HHHHHHHHhCCCeEE
Q 039732 42 WEAMEECQRLGLTKFIGVSNFSSK-------KIEALLAFSTIPPSVNQVEMNPAWQ-------Q-RQLREFCKSKSIIVT 106 (214)
Q Consensus 42 ~~~l~~l~~~Gkir~iGiS~~~~~-------~l~~~~~~~~~~~~~~q~~~~~~~~-------~-~~~~~~~~~~gi~vi 106 (214)
.+.+.+++.+--=|++|+.+.++. .+++.+...+ ++++..+...+ . ..+++.|.++|+.++
T Consensus 86 nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~g----f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ 161 (293)
T COG2159 86 NDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELG----FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVV 161 (293)
T ss_pred hHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcC----ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEE
Confidence 356777888888899999987654 3444444432 33333322222 1 569999999999998
Q ss_pred EeccCC
Q 039732 107 AFSPLG 112 (214)
Q Consensus 107 ~~~~l~ 112 (214)
......
T Consensus 162 ihtG~~ 167 (293)
T COG2159 162 IHTGAG 167 (293)
T ss_pred EEeCCC
Confidence 866554
No 170
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=31.66 E-value=42 Score=26.90 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=53.7
Q ss_pred HHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCC--------
Q 039732 67 IEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGK-------- 138 (214)
Q Consensus 67 l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~-------- 138 (214)
+....+..+++.....++-..-.-..++.+.+++.+|..++++.+.. . .....+..+|.+.|+
T Consensus 50 ~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~~------~---~~r~~~e~vc~~lGl~~~~PLW~ 120 (218)
T PF01902_consen 50 IEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDIDS------E---YQRNWVERVCERLGLEAVFPLWG 120 (218)
T ss_dssp HHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TTS-------H---HHHHHHHHHHHHCT-EEE-TTTT
T ss_pred HHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcCCc------H---HHHHHHHHHHHHcCCEEEecccC
Confidence 44445555554433333311111126677888888877777655543 1 123577788888765
Q ss_pred -CHHHHHHHHHhhcC-cEEeeCCCCHHHHHHhhccccccCCHHHHHHHhccCC
Q 039732 139 -TVAQVCLRWIIEQG-AIVVAKSFNKERLKENLDIFDWALTDHDYDKINQIPQ 189 (214)
Q Consensus 139 -s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 189 (214)
+..+ .++-.+..+ .++|+.+.+ ..|.+.. ++..++.+.++.|.++.+
T Consensus 121 ~d~~~-ll~e~i~~Gf~aiIv~V~~-~~L~~~~--LGr~l~~e~i~~L~~~~~ 169 (218)
T PF01902_consen 121 RDREE-LLREFIESGFEAIIVKVDA-DGLDESF--LGRELDRELIEELPELNK 169 (218)
T ss_dssp --HHH-HHHHHHHTT-EEEEEEEES-TT--GGG--TT-B--HHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHCCCeEEEEEEec-cCCChHH--CCCCccHHHHHHHHHHHh
Confidence 3344 445555668 555555543 3454332 466889888888887743
No 171
>PRK06256 biotin synthase; Validated
Probab=31.61 E-value=3.2e+02 Score=23.06 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEe-cCC--CH---HHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEe
Q 039732 35 PLDYKGVWEAMEECQRLGLTKFIGV-SNF--SS---KKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~~Gkir~iGi-S~~--~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~ 108 (214)
..+.+++++.+..+++.|-.+..=+ +++ .. +.+.++++..+-.+.+ .+..+......+.++..++.|+..+..
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i-~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDL-EICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCC-cEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 4678999999999999986544322 233 21 2344444433211111 111222223467889999999876654
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC----cEEeeCC-CCHHHHHHhhcc
Q 039732 109 SPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG----AIVVAKS-FNKERLKENLDI 171 (214)
Q Consensus 109 ~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~----~~vl~g~-~~~~~l~enl~a 171 (214)
+ +- . ..+.+..++..+...-.--+++.+...+ +..|+|. .+.+++.+.+..
T Consensus 169 ~-lE---------t--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~ 224 (336)
T PRK06256 169 N-LE---------T--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFF 224 (336)
T ss_pred C-Cc---------c--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHH
Confidence 2 11 0 1233344432221111122455555555 4456665 356666655543
No 172
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=31.48 E-value=2.6e+02 Score=21.95 Aligned_cols=73 Identities=16% Similarity=0.353 Sum_probs=49.5
Q ss_pred CCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC-
Q 039732 74 STIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG- 152 (214)
Q Consensus 74 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~- 152 (214)
.++.|+++--.+--. ..+..++.+++++.++.+.+-- ..|-.++|++|++.++
T Consensus 34 ~gi~Pd~iiGDfDSi--~~~~~~~~~~~~~~~~~~~~eK------------------------D~TD~e~Al~~~~~~~~ 87 (203)
T TIGR01378 34 LGLTPDLIVGDFDSI--DEEELDFYKKAGVKIIVFPPEK------------------------DTTDLELALKYALERGA 87 (203)
T ss_pred CCCCCCEEEeCcccC--CHHHHHHHHHcCCceEEcCCCC------------------------CCCHHHHHHHHHHHCCC
Confidence 556677664443211 2567788888888887764432 3578889999999887
Q ss_pred -cEEeeCCC--CHHHHHHhhccc
Q 039732 153 -AIVVAKSF--NKERLKENLDIF 172 (214)
Q Consensus 153 -~~vl~g~~--~~~~l~enl~a~ 172 (214)
..++.|+. ..+|.-.|+..+
T Consensus 88 ~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 88 DEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Confidence 56677654 677887887754
No 173
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.29 E-value=3.4e+02 Score=23.37 Aligned_cols=77 Identities=9% Similarity=0.202 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccc-----h----HHHHHHHHh
Q 039732 37 DYKGVWEAMEECQRL-GL---TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQ-----Q----RQLREFCKS 100 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~-Gk---ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~-----~----~~~~~~~~~ 100 (214)
..+++++++..+.++ |+ ++|+=+. |.+.+.+.++.+..+ ....++-++||.... . ....+..++
T Consensus 237 ~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~~~~~~~ps~e~i~~F~~~L~~ 316 (342)
T PRK14465 237 PLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTEFFGWRRPTDDEVAEFIMLLEP 316 (342)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 478999999987644 33 3355554 445666666655443 234677778886321 1 456777888
Q ss_pred CCCeEEEeccCCC
Q 039732 101 KSIIVTAFSPLGA 113 (214)
Q Consensus 101 ~gi~vi~~~~l~~ 113 (214)
+|+.+..+...|.
T Consensus 317 ~Gi~v~~R~~~G~ 329 (342)
T PRK14465 317 AGVPILNRRSPGK 329 (342)
T ss_pred CCCeEEEeCCCCc
Confidence 9999999988876
No 174
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=31.20 E-value=1.4e+02 Score=21.97 Aligned_cols=110 Identities=14% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccC---cccchHHHHHHHHhCCCeE-EEeccCC-CCC
Q 039732 41 VWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMN---PAWQQRQLREFCKSKSIIV-TAFSPLG-AAG 115 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~---~~~~~~~~~~~~~~~gi~v-i~~~~l~-~~G 115 (214)
....+.+.++ +..-+.|.-.+...+..++...+ ++++.+.+. .+......+..|.++|+.+ +.|+|+- .
T Consensus 14 ~~~~~~~~~~--~~divav~p~~~~~~~~a~~~~~--vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~-- 87 (150)
T PF01876_consen 14 LRRSLSKFRK--KYDIVAVRPGSEKAFRAACSDPR--VDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRS-- 87 (150)
T ss_dssp HHHHHHHTTT----SEEEEE-S-HHHHHHHHHTT----SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS--
T ss_pred HHHHhhcccC--CceEEEEEcCCHHHHHHHHhcCC--CCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhcc--
Confidence 3444444443 56667777788888888888875 477777663 2333478999999999998 6787776 2
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCCCHHHHHHhhc
Q 039732 116 SSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSFNKERLKENLD 170 (214)
Q Consensus 116 ~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~ 170 (214)
. .. .+..-.+-.+..+++....+.++-.|++++-+++.-.+
T Consensus 88 -----~----~~-----~r~~~~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~d 128 (150)
T PF01876_consen 88 -----D----GS-----NRRNFISNARRLIRLTKKKNIIISSGASSPLELRSPRD 128 (150)
T ss_dssp ----------HH-----HHHHHHHHHHHHHHHHHH--EEEE---SSGGG---HHH
T ss_pred -----C----cH-----HHHHHHHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHH
Confidence 0 01 11111234455677777777667777777666654433
No 175
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.09 E-value=4.1e+02 Score=24.16 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEec-----CC-----CHHHHHHHHhcCC-CC-C-eeeecccCcccchHHHHHHHHh
Q 039732 34 VPLDYKGVWEAMEECQRLGLTKFIGVS-----NF-----SSKKIEALLAFST-IP-P-SVNQVEMNPAWQQRQLREFCKS 100 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~Gkir~iGiS-----~~-----~~~~l~~~~~~~~-~~-~-~~~q~~~~~~~~~~~~~~~~~~ 100 (214)
.....+++++.+..++++| ++.|-+. .| +...+.++++... ++ . .+-....++.....++++..++
T Consensus 184 rsr~~e~Vv~Ei~~l~~~g-~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~ 262 (502)
T PRK14326 184 KDRRPGDILAEVQALVDEG-VLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAE 262 (502)
T ss_pred ccCCHHHHHHHHHHHHHCC-CceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHh
Confidence 4566899999999999998 5665332 11 2233444443321 11 0 1111122222334788999888
Q ss_pred CC
Q 039732 101 KS 102 (214)
Q Consensus 101 ~g 102 (214)
.|
T Consensus 263 ~g 264 (502)
T PRK14326 263 TP 264 (502)
T ss_pred cC
Confidence 76
No 176
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=30.99 E-value=91 Score=27.76 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHhcCCCC-----CeeeecccCcccchHHHHHHHHhCCCeEEEeccCC
Q 039732 39 KGVWEAMEECQRLGL-TKFIGVSNFSSKKIEALLAFSTIP-----PSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gk-ir~iGiS~~~~~~l~~~~~~~~~~-----~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
.-+...++.++++|. ++++++.+-....+..+.+..+.+ .+.+...-....+-.++...|++.||.+.+-..-+
T Consensus 142 ~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQa 221 (428)
T KOG1549|consen 142 PCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQA 221 (428)
T ss_pred cchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhh
Confidence 446777888888986 788888754444444444433311 22333333344455889999999999777655554
Q ss_pred C
Q 039732 113 A 113 (214)
Q Consensus 113 ~ 113 (214)
-
T Consensus 222 v 222 (428)
T KOG1549|consen 222 V 222 (428)
T ss_pred c
Confidence 3
No 177
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=30.96 E-value=1e+02 Score=24.90 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEec----CCCHHHHHHHHhcCCCCCeeeecccCcccch--HHHHHHHHhCCCeEEEeccC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVS----NFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS----~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l 111 (214)
.+++.++|.+++ +.+|... .+-...++.+++..+++ .|.++... .+++...-+.|..++.-++-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 566677777776 5555543 45556678888877642 34455543 66777777788777666666
Q ss_pred CCCCCCC---CCC-CCCChHHHHHHHHHhCCCHH
Q 039732 112 GAAGSSW---GTN-QVMNNEALKQIADAHGKTVA 141 (214)
Q Consensus 112 ~~~G~L~---~~~-~~~~~~~l~~~a~~~~~s~~ 141 (214)
+. |+-. |.. +....+.+..++++||++|+
T Consensus 145 a~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 65 5531 111 11124677778888887764
No 178
>PF14502 HTH_41: Helix-turn-helix domain
Probab=30.92 E-value=1e+02 Score=18.44 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhCCC--HHHHHHHHHhhcCcEEe
Q 039732 126 NEALKQIADAHGKT--VAQVCLRWIIEQGAIVV 156 (214)
Q Consensus 126 ~~~l~~~a~~~~~s--~~q~al~~~l~~~~~vl 156 (214)
.+.+.+++++++++ ..|-||+|+-..+.+.+
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 46788999999877 68999999988874433
No 179
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=30.84 E-value=1.6e+02 Score=24.75 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCeEEEeccCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~ 112 (214)
.+.+..+++.|+.+.+.--++
T Consensus 166 ~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 166 VDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred HHHHHHHHHcCCEEEEeEEEC
Confidence 467788888898877655554
No 180
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=30.70 E-value=2e+02 Score=20.48 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEe
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~ 108 (214)
...++..|..+++.|++ ..| ...+.+++.....+..++-...+..+....+..+|+..+|+++-.
T Consensus 11 ~~ki~~lL~la~ragkl-~~G-----~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 11 ANKALEAVEKARETGKI-KKG-----TNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHHcCCE-eEc-----HHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 35688888889999986 334 366677777666555555555544333477899999999996653
No 181
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=30.51 E-value=3.6e+02 Score=23.35 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc---hHHHHHHHHhCCCeEEEeccCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
....+..+..+...+.++..-+...+.+.++++++. +.+..++..+.|+... -..+.+.|+++|+-++.=...+.
T Consensus 100 y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 100 YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 455666666666666555555545567777776643 2233344445554332 26889999999998887666653
No 182
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=30.43 E-value=2.7e+02 Score=22.39 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCC-------HHHHHHHHhcCCCCCeeeeccc
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFS-------SKKIEALLAFSTIPPSVNQVEM 85 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~-------~~~l~~~~~~~~~~~~~~q~~~ 85 (214)
...=+++-.++.++|||+++=+|+.+ +..+.+.+-..+++...+-+.|
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDy 132 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDY 132 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecc
Confidence 34557778889999999999999643 4455566666666544444433
No 183
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.37 E-value=3.5e+02 Score=23.15 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccch---------HHHHHHHHh
Q 039732 37 DYKGVWEAMEECQRL-GL---TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQQ---------RQLREFCKS 100 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~-Gk---ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~---------~~~~~~~~~ 100 (214)
..+++++.+.++.++ |. ++++-+. |.+.+.+.++.+..+ ....++-++||..... ..+.+..++
T Consensus 233 ~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~ 312 (343)
T PRK14469 233 SIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLK 312 (343)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHH
Confidence 478899998887765 43 5566665 455667777766543 2345677788875421 356777788
Q ss_pred CCCeEEEeccCCC
Q 039732 101 KSIIVTAFSPLGA 113 (214)
Q Consensus 101 ~gi~vi~~~~l~~ 113 (214)
+|+.+..+...+.
T Consensus 313 ~gi~vtvr~~~g~ 325 (343)
T PRK14469 313 NGIEAEIRREKGS 325 (343)
T ss_pred CCCeEEEeCCCCc
Confidence 8999988877765
No 184
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=30.24 E-value=2.1e+02 Score=20.53 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
.+.+++.+....+.|+|. .......++++....+..++--..++-+--..+...|.+++|.++-..
T Consensus 12 ~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~ 77 (116)
T COG1358 12 EQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVG 77 (116)
T ss_pred HHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeC
Confidence 567888888899999773 345677777787665556655554443444778999999999987643
No 185
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.53 E-value=3.4e+02 Score=22.75 Aligned_cols=108 Identities=9% Similarity=0.075 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCccEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeEEE-e
Q 039732 39 KGVWEAMEECQRLGLTKFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVTA-F 108 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~-~ 108 (214)
+.++..+..+-++=+| -+.+- .| +.+.+.++++. -+..+|+.-|-+..+ .+++++|+..|+.|-+ .
T Consensus 60 ~~~~~~~~~~A~~~~v-PV~lHLDH~~~~e~i~~Ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaEl 135 (283)
T PRK07998 60 DYIYEIVKRHADKMDV-PVSLHLDHGKTFEDVKQAVRA---GFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAEL 135 (283)
T ss_pred HHHHHHHHHHHHHCCC-CEEEECcCCCCHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4444455555444333 12221 12 45667777654 367888766654442 6899999999998833 4
Q ss_pred ccCCCCC--CCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcC
Q 039732 109 SPLGAAG--SSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQG 152 (214)
Q Consensus 109 ~~l~~~G--~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~ 152 (214)
+.+++.. .......+-..+...+++++.|++. +|+++-..||
T Consensus 136 G~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~--LAvaiGt~HG 179 (283)
T PRK07998 136 GAILGKEDDHVSEADCKTEPEKVKDFVERTGCDM--LAVSIGNVHG 179 (283)
T ss_pred ccCCCccccccccccccCCHHHHHHHHHHhCcCe--eehhcccccc
Confidence 4443200 0000111334566677777777653 3444433333
No 186
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=29.43 E-value=1.4e+02 Score=27.55 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=9.1
Q ss_pred HHHHHHHHHhCCCH
Q 039732 127 EALKQIADAHGKTV 140 (214)
Q Consensus 127 ~~l~~~a~~~~~s~ 140 (214)
.-..++++.+|++.
T Consensus 478 ~la~aLae~lgvdI 491 (576)
T COG1151 478 VLALALAEVLGLDI 491 (576)
T ss_pred HHHHHHHHHhCCCC
Confidence 44556777788764
No 187
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=29.17 E-value=3.2e+02 Score=22.27 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=5.8
Q ss_pred cCCHHHHHHHhcc
Q 039732 175 ALTDHDYDKINQI 187 (214)
Q Consensus 175 ~L~~~~~~~l~~~ 187 (214)
.++-+++..+.+.
T Consensus 236 Q~~~~el~~i~~~ 248 (253)
T PRK02412 236 QISVEDLRRILEI 248 (253)
T ss_pred CCCHHHHHHHHHH
Confidence 4444444444433
No 188
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.17 E-value=2.9e+02 Score=21.88 Aligned_cols=99 Identities=7% Similarity=-0.040 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHH---HHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKI---EALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGAA 114 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l---~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~ 114 (214)
.+++.+..+.|.+. -|+.+=|+..++..+ +++.+.. +++.---=+++ ..+..+.+.+.|..++. +|-..
T Consensus 19 ~e~a~~~~~al~~~-Gi~~iEit~~t~~a~~~i~~l~~~~---~~~~vGAGTVl--~~~~a~~a~~aGA~Fiv-sP~~~- 90 (204)
T TIGR01182 19 VDDALPLAKALIEG-GLRVLEVTLRTPVALDAIRLLRKEV---PDALIGAGTVL--NPEQLRQAVDAGAQFIV-SPGLT- 90 (204)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeCCCccHHHHHHHHHHHC---CCCEEEEEeCC--CHHHHHHHHHcCCCEEE-CCCCC-
Confidence 56666666666554 567888776655443 3443322 22111111111 24567788888888874 33322
Q ss_pred CCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhcCcEEeeCCCCHHHHHHhhcc
Q 039732 115 GSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQGAIVVAKSFNKERLKENLDI 171 (214)
Q Consensus 115 G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~a 171 (214)
+. .++++..++...+||+.|+.++...+++
T Consensus 91 ------------~~---------------v~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 91 ------------PE---------------LAKHAQDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred ------------HH---------------HHHHHHHcCCcEECCCCCHHHHHHHHHC
Confidence 22 4455555566678888888888887765
No 189
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=29.15 E-value=1.7e+02 Score=26.41 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=5.8
Q ss_pred CCCCeeeE
Q 039732 2 LQMDYVDL 9 (214)
Q Consensus 2 L~tdyiDl 9 (214)
+|.||||+
T Consensus 78 ~~~d~vDi 85 (477)
T PRK09310 78 LNPNYLDI 85 (477)
T ss_pred hCCCEEEE
Confidence 56777777
No 190
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=29.12 E-value=1.2e+02 Score=26.62 Aligned_cols=48 Identities=29% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHhcCC---CCCeeeecccCcccch-------HHHHHHHHhCCCeEEEe
Q 039732 61 NFSSKKIEALLAFST---IPPSVNQVEMNPAWQQ-------RQLREFCKSKSIIVTAF 108 (214)
Q Consensus 61 ~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~vi~~ 108 (214)
|++.+.++++++..+ ++..+.-+..|....+ +.+.++|++.||.++--
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~D 225 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMD 225 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEee
Confidence 456677777777654 4555555555554433 57888888888888753
No 191
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.11 E-value=1e+02 Score=30.79 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=38.2
Q ss_pred eeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHh
Q 039732 6 YVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLA 72 (214)
Q Consensus 6 yiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~ 72 (214)
.+|+++|--|...-+. .....+++.|.++.+.|+ .|||.+|..+....+..
T Consensus 978 ~~~~l~lDEp~~~LD~--------------~~~~~~~~~l~~l~~~g~--~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDE--------------DSLDRAIGILDAIREGSK--MIGIISHVPEFRERIPH 1028 (1042)
T ss_pred CCCeEEecCCCCCCCH--------------HHHHHHHHHHHHHHhCCC--EEEEEeCcHHHHHhhCC
Confidence 4688888888755442 236778999999988775 59999999887766644
No 192
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.08 E-value=3.3e+02 Score=22.44 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=12.8
Q ss_pred hHHHHHHHHhCCCeEEE
Q 039732 91 QRQLREFCKSKSIIVTA 107 (214)
Q Consensus 91 ~~~~~~~~~~~gi~vi~ 107 (214)
-.+.+++++++|..+..
T Consensus 120 ~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 120 LEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHHCCCeEEE
Confidence 36778888888877665
No 193
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.71 E-value=2.8e+02 Score=24.24 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch---HHHHHHHHhCC-CeEEEeccCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKS-IIVTAFSPLGA 113 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~g-i~vi~~~~l~~ 113 (214)
..++...++++....-|...=+-..+.+.++++++. +.+..++..+-|+...- ..+.+.|+++| +.++.=+.++.
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 577888888766555555443444577888888775 34456667777765442 67899999999 99999999987
Q ss_pred CCCCC
Q 039732 114 AGSSW 118 (214)
Q Consensus 114 ~G~L~ 118 (214)
+.+.
T Consensus 183 -p~~~ 186 (386)
T PF01053_consen 183 -PYNQ 186 (386)
T ss_dssp -TTTC
T ss_pred -eeee
Confidence 6553
No 194
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=28.57 E-value=3.9e+02 Score=23.12 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCccc--------ch------HHHHHHHHhCCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW--------QQ------RQLREFCKSKSI 103 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--------~~------~~~~~~~~~~gi 103 (214)
..++++.+.+ ...+++.++. .+...++.+++.. +....+-++.+... ++ .+++++++++|+
T Consensus 102 ~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl 176 (347)
T PLN02746 102 AKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSI 176 (347)
T ss_pred HHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3455555543 2335555664 4788888888763 22222222222111 11 478999999999
Q ss_pred eEEEec
Q 039732 104 IVTAFS 109 (214)
Q Consensus 104 ~vi~~~ 109 (214)
.+.++-
T Consensus 177 ~v~~~i 182 (347)
T PLN02746 177 PVRGYV 182 (347)
T ss_pred eEEEEE
Confidence 885433
No 195
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.52 E-value=3.9e+02 Score=23.08 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCC-ccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc--------h------HHHHHHHHhCCCeEE
Q 039732 42 WEAMEECQRLGL-TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--------Q------RQLREFCKSKSIIVT 106 (214)
Q Consensus 42 ~~~l~~l~~~Gk-ir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--------~------~~~~~~~~~~gi~vi 106 (214)
++.+..+.+.+. .+..+++......++.+.+. ++....+-+..|.... + .+.+++++++|..+.
T Consensus 52 ~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 52 RAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 556666665543 67777776777778777664 3222222222221111 1 367888888887754
No 196
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=28.26 E-value=3.3e+02 Score=22.16 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhcCCCCCeee--ecccCcccch-----HHHHHHHHhCCCeEEEeccCCC
Q 039732 62 FSSKKIEALLAFSTIPPSVN--QVEMNPAWQQ-----RQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~-----~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
.++..++.+.+.+++.+..+ -.+||.+..+ .++.+|++.-|..-+.+-|+..
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd 107 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND 107 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC
Confidence 56788999999888543222 3367777654 6899999999999999999976
No 197
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=28.20 E-value=71 Score=26.34 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCCeeeecccCcccch-HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHH
Q 039732 65 KKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQV 143 (214)
Q Consensus 65 ~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~ 143 (214)
..|..+.+..+. +-+..-.|..|.+. .-+-.++.++|+.+++.|.-+. |+-. ......-..++++.|++..-
T Consensus 143 ~~i~~la~~~gL-~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~-~~p~----fp~~~~d~gqa~~l~v~~~P- 215 (256)
T TIGR02739 143 KAIQQLSQSYGL-FFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGT-LIPG----LPNSRSDSGQAQHLGVKYFP- 215 (256)
T ss_pred HHHHHHHhceeE-EEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCC-CCCC----CCCccCChHHHHhcCCccCc-
Confidence 345555555442 23334455555555 5567899999999999998876 4321 11111123345555543200
Q ss_pred HHHHHhhcC----cEEeeCCCCHHHHHHhhc
Q 039732 144 CLRWIIEQG----AIVVAKSFNKERLKENLD 170 (214)
Q Consensus 144 al~~~l~~~----~~vl~g~~~~~~l~enl~ 170 (214)
|+ |+...+ ..+-.|.-+.++|.+.+-
T Consensus 216 al-~Lv~~~t~~~~pv~~G~iS~deL~~Ri~ 245 (256)
T TIGR02739 216 AL-YLVNPKSQKMSPLAYGFISQDELKERIL 245 (256)
T ss_pred eE-EEEECCCCcEEEEeeccCCHHHHHHHHH
Confidence 00 111111 334557777777766654
No 198
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.07 E-value=3.8e+02 Score=22.88 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCcc-EEEecCC---CHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccC
Q 039732 36 LDYKGVWEAMEECQRLGLTK-FIGVSNF---SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir-~iGiS~~---~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 111 (214)
....|+.+.|+++.+.=++- .||=|+. ++..++++.+.+.-. .+...+.|+-..-..+.+.+.++|=.|++|+++
T Consensus 182 ~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~ 260 (403)
T COG2069 182 TPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQM 260 (403)
T ss_pred CCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc-eEEeeccccccCHHHHHHHHHhcCceEEEeecc
Confidence 44789999999988887764 4677754 688899988877532 344444444222378999999999999999988
Q ss_pred CC
Q 039732 112 GA 113 (214)
Q Consensus 112 ~~ 113 (214)
--
T Consensus 261 D~ 262 (403)
T COG2069 261 DV 262 (403)
T ss_pred Ch
Confidence 64
No 199
>PF14177 YkyB: YkyB-like protein
Probab=27.98 E-value=56 Score=24.14 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCccEEEec
Q 039732 43 EAMEECQRLGLTKFIGVS 60 (214)
Q Consensus 43 ~~l~~l~~~Gkir~iGiS 60 (214)
++|.+|++||+.+-||+-
T Consensus 31 ~aL~Kll~E~kA~kiGlH 48 (140)
T PF14177_consen 31 KALQKLLEEGKAKKIGLH 48 (140)
T ss_pred HHHHHHHHcCcceEEEEe
Confidence 578999999999999975
No 200
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=27.97 E-value=1.1e+02 Score=25.07 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEec----CCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEE
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVS----NFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVT 106 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS----~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi 106 (214)
...++-++.|+++|++ +|+- -|++++.....+.. +++|++--+ .++.+++..+.+.|-.+=
T Consensus 71 pGLeeglki~~~vK~e-----fgv~ilTDVHe~~q~~~vA~Vv----DilQiPAFL-cRQTDLl~A~AkTg~~vN 135 (279)
T COG2877 71 PGLEEGLKILQEVKEE-----FGVPILTDVHEPSQAQPVAEVV----DVLQIPAFL-CRQTDLLVAAAKTGAVVN 135 (279)
T ss_pred CCHHHHHHHHHHHHHH-----cCCceeeccCChhhcchHHhhh----hhhcchHHH-hhhHHHHHHHHHhCCeEe
Confidence 3488999999999998 5543 36777776666544 788988766 445667677777665553
No 201
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=27.87 E-value=1.4e+02 Score=24.10 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcC
Q 039732 35 PLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
..+...+-+.+.+++++|++ +=+|+|..+.++++++..
T Consensus 166 i~~~r~~~dfi~q~k~egr~--viFSSH~m~EvealCDrv 203 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRA--VIFSSHIMQEVEALCDRV 203 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcE--EEEecccHHHHHHhhheE
Confidence 34567788889999999975 789999999999998853
No 202
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.85 E-value=4e+02 Score=23.02 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccch----------HHHHHHH
Q 039732 36 LDYKGVWEAMEECQRL-GL---TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQQ----------RQLREFC 98 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~-Gk---ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~ 98 (214)
.+.+++.+++.++.++ |+ +-|+=+. |.+++.+.++.+... .+..++-++||..... ....+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 3578888888886543 42 2233232 677888888877654 4567888888874331 4567778
Q ss_pred HhCCCeEEEeccCCCCCCC
Q 039732 99 KSKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 99 ~~~gi~vi~~~~l~~~G~L 117 (214)
+++|+.+......|. .+.
T Consensus 303 ~~~gi~~tiR~~~G~-di~ 320 (344)
T PRK14464 303 HRRGVLTKVRNSAGQ-DVD 320 (344)
T ss_pred HHCCceEEEECCCCC-chh
Confidence 899999999988876 443
No 203
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=27.80 E-value=69 Score=24.95 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=12.0
Q ss_pred HcCCccEEEecCCCHHH
Q 039732 50 RLGLTKFIGVSNFSSKK 66 (214)
Q Consensus 50 ~~Gkir~iGiS~~~~~~ 66 (214)
....++.+|++++....
T Consensus 96 ~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 96 GLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCcEEEEEecCChhhHH
Confidence 34678889998875544
No 204
>PRK06801 hypothetical protein; Provisional
Probab=27.57 E-value=3.2e+02 Score=22.88 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEec-CC--CHHHHHHHHhcCCCCCeeeecccCcccch------HHHHHHHHhCCCeE-EE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVS-NF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIV-TA 107 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS-~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~v-i~ 107 (214)
.+.....+..+.++=.| -+.+- .| +.+.+.++++. -+..+|+.-+-+..+ .++.++|+..|+.+ ..
T Consensus 59 ~~~~~~~~~~~a~~~~v-pV~lHlDH~~~~e~i~~Ai~~---GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~E 134 (286)
T PRK06801 59 LESLVEAVKFEAARHDI-PVVLNLDHGLHFEAVVRALRL---GFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAE 134 (286)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHh---CCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEee
Confidence 45555555555554444 23332 22 45667777664 368888877765533 67899999999987 33
Q ss_pred eccCC
Q 039732 108 FSPLG 112 (214)
Q Consensus 108 ~~~l~ 112 (214)
...++
T Consensus 135 lG~vg 139 (286)
T PRK06801 135 LGAVG 139 (286)
T ss_pred cCccc
Confidence 44444
No 205
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=27.54 E-value=4.6e+02 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCeEEEeccCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~ 112 (214)
...+++++++|..+.+.-...
T Consensus 125 ~~~i~~ak~~G~~v~~~i~~t 145 (467)
T PRK14041 125 EKSIEVAKKHGAHVQGAISYT 145 (467)
T ss_pred HHHHHHHHHCCCEEEEEEEec
Confidence 677899999998877544433
No 206
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.52 E-value=4.4e+02 Score=23.36 Aligned_cols=127 Identities=14% Similarity=0.201 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEec-----CC-C------HHHHHHHHhcCC-CCCeeeecccC---cccchHHHHHH
Q 039732 34 VPLDYKGVWEAMEECQRLGLTKFIGVS-----NF-S------SKKIEALLAFST-IPPSVNQVEMN---PAWQQRQLREF 97 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~Gkir~iGiS-----~~-~------~~~l~~~~~~~~-~~~~~~q~~~~---~~~~~~~~~~~ 97 (214)
...+.+++++.++.++++| ++.|-+. .+ . ...+.++++... ++ ....+.+. +.....++++.
T Consensus 174 ~sr~~e~Iv~Ei~~l~~~g-~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~-~~~~ir~~~~~p~~~~~ell~~ 251 (444)
T PRK14325 174 VSRPVDDVLAEVAQLAEQG-VREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAID-GIERIRYTTSHPRDFTDDLIEA 251 (444)
T ss_pred ccCCHHHHHHHHHHHHHCC-CcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcC-CccEEEEccCCcccCCHHHHHH
Confidence 3567899999999999987 4555433 11 1 123444444321 11 11122332 22334788888
Q ss_pred HHhCCCeE-EEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhhc--C----cEEeeCC--CCHHHHHHh
Q 039732 98 CKSKSIIV-TAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIEQ--G----AIVVAKS--FNKERLKEN 168 (214)
Q Consensus 98 ~~~~gi~v-i~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~--~----~~vl~g~--~~~~~l~en 168 (214)
.++.|-++ ...-++-+ | ....+..+-+.+...-..-+++.+... + ...|+|. .+.+.+++.
T Consensus 252 l~~~~~~~~~l~igiqS-g---------s~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~t 321 (444)
T PRK14325 252 YADLPKLVPFLHLPVQS-G---------SDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEAT 321 (444)
T ss_pred HHcCCcccCceeccCCc-C---------CHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHH
Confidence 88765221 11122222 1 223444443333333333455555543 2 3456663 567777777
Q ss_pred hccc
Q 039732 169 LDIF 172 (214)
Q Consensus 169 l~a~ 172 (214)
++.+
T Consensus 322 l~~i 325 (444)
T PRK14325 322 MKLI 325 (444)
T ss_pred HHHH
Confidence 6653
No 207
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=27.37 E-value=1.5e+02 Score=25.97 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=29.2
Q ss_pred CHHHHHHHHhcCCCCCeeeecccCcccch---------HHHHHHHHhCCCeEEEeccC
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ---------RQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---------~~~~~~~~~~gi~vi~~~~l 111 (214)
+-+.+++.....+++ +.+-||+.++- ..+.+.|+++||.||+--.-
T Consensus 146 D~~~LE~~~~~~~vk---l~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIH 200 (388)
T COG1168 146 DFDALEKAFVDERVK---LFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIH 200 (388)
T ss_pred cHHHHHHHHhcCCcc---EEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeeccc
Confidence 456666666665432 33344444441 57899999999999875443
No 208
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=27.25 E-value=4e+02 Score=22.80 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=37.8
Q ss_pred ccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch---HHHHHHHHhCCCeEEEeccCCC
Q 039732 54 TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 54 ir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
++..-+...+.+.+++++.. +.+..++..+.|+.... .++.+.|+++|+.++.=..++.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 44444544567777776643 23334445566764332 6789999999999988777654
No 209
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=27.21 E-value=3.4e+02 Score=22.26 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=22.4
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhcC
Q 039732 45 MEECQRLGLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 45 l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
++.+++.|.-+.+=+|+|+++.+..+....
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~ 185 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLKQ 185 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhhC
Confidence 344556677788999999999987776654
No 210
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=27.01 E-value=3.9e+02 Score=23.15 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=32.5
Q ss_pred CHHHHHHHHhcCCCCCeeeecccCcccc---hHHHHHHHHhCCCeEEEeccCCC
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
+.+.+++++...+.+..++....|+... -.++.+.|+++|+.++.=...+.
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~ 178 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFAT 178 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 4666776665423333444445554322 26889999999999988777654
No 211
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=26.58 E-value=3.6e+02 Score=22.08 Aligned_cols=70 Identities=11% Similarity=-0.018 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHcCC-ccEEEe-cCC-C------HH---HHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCC
Q 039732 36 LDYKGVWEAMEECQRLGL-TKFIGV-SNF-S------SK---KIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSI 103 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gk-ir~iGi-S~~-~------~~---~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi 103 (214)
.+.+++++...++.++|- |--||. |+. . .+ .+..+++... ....++.++-....++++.|-++|+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~---~~~~~plSIDT~~~~v~e~al~~G~ 97 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALR---GELDVLISVDTFRAEVARAALEAGA 97 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHH---hcCCCcEEEeCCCHHHHHHHHHhCC
Confidence 457899999999999985 445553 321 1 12 2222233221 1112344454556899999999998
Q ss_pred eEEEe
Q 039732 104 IVTAF 108 (214)
Q Consensus 104 ~vi~~ 108 (214)
.++--
T Consensus 98 ~iINd 102 (257)
T cd00739 98 DIIND 102 (257)
T ss_pred CEEEe
Confidence 87663
No 212
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.51 E-value=3.6e+02 Score=23.47 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=48.5
Q ss_pred HHHHHHHHHHc------CCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccC
Q 039732 41 VWEAMEECQRL------GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 41 ~~~~l~~l~~~------Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 111 (214)
-++.+.+++++ +.=-..|-|.++...+.++++.. ..+++|...+-+- ...++.++|+.+|+.++..+..
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~--a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG--AAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC--CCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 46667777766 34445566667888888887765 2477777766533 2378899999999999986543
No 213
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=26.28 E-value=1.3e+02 Score=21.41 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHH
Q 039732 92 RQLREFCKSKSIIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRW 147 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~ 147 (214)
...++.|++.|+. .+.++.+ -+.-+-+..-.+.+...|+..|+|+.+++..-
T Consensus 52 ~~yle~C~~~g~E--P~k~~SG--kf~~Ri~p~lH~~a~~aAa~qgiSLN~~v~~~ 103 (111)
T COG4226 52 DDYLEFCKERGIE--PRKPYSG--KFNLRIDPELHEAAALAAAAQGISLNTWVEEA 103 (111)
T ss_pred HHHHHHHHHcCCC--CccccCc--eeeEecCHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5789999999998 5667753 22111111112444555667799999887664
No 214
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=26.26 E-value=1.9e+02 Score=24.80 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=31.6
Q ss_pred ecCCCHHHHHHHHhcCCCCCeeeec--------------ccCcccch------HHHHHHHHhCCCeEEEeccCC
Q 039732 59 VSNFSSKKIEALLAFSTIPPSVNQV--------------EMNPAWQQ------RQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 59 iS~~~~~~l~~~~~~~~~~~~~~q~--------------~~~~~~~~------~~~~~~~~~~gi~vi~~~~l~ 112 (214)
-+.|++++..++++.++.+..+.-. .||+.+.. .++.+.|+++|+.+-.|-...
T Consensus 88 p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 88 PTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp -TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred cccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 3456677777777766644333322 34443332 689999999999997766654
No 215
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=25.99 E-value=1.2e+02 Score=18.91 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCCccEEE
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIG 58 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iG 58 (214)
+....+++.|.+|.++|.|...+
T Consensus 34 i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 34 ISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEEc
Confidence 34678999999999999998877
No 216
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=25.67 E-value=4.5e+02 Score=22.94 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=68.6
Q ss_pred ccccCCCc---CCCCCCCHHHHHHHHHHHHHcCCccEEEecC-----CC-----HHHHHHHHhcCCCCCeeeeccc---C
Q 039732 23 KLQSLIPK---EDLVPLDYKGVWEAMEECQRLGLTKFIGVSN-----FS-----SKKIEALLAFSTIPPSVNQVEM---N 86 (214)
Q Consensus 23 ~~~~~~~~---~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~-----~~-----~~~l~~~~~~~~~~~~~~q~~~---~ 86 (214)
.|+|+... ......+.+.+++.++.+++.| ++.|-+.+ +. ...+.++++...-.+....+.+ +
T Consensus 151 ~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~ 229 (414)
T TIGR01579 151 FCSYCIIPFARGRSRSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID 229 (414)
T ss_pred CCCCCceeeecCCCccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC
Confidence 34666432 2344677899999999999987 56665432 21 1123334332210011111222 2
Q ss_pred cccchHHHHHHHHhCC-CeEEEeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHHHHHHhh--cC----cEEeeC-
Q 039732 87 PAWQQRQLREFCKSKS-IIVTAFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTVAQVCLRWIIE--QG----AIVVAK- 158 (214)
Q Consensus 87 ~~~~~~~~~~~~~~~g-i~vi~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~--~~----~~vl~g- 158 (214)
+..-..++++..++.| +-....-++-+ | ....+..+.+.+...-..-+++.+.+ .+ ...|+|
T Consensus 230 p~~~~~ell~~m~~~~~~~~~l~lglES-g---------s~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~ 299 (414)
T TIGR01579 230 PEDIDEELLEAIASEKRLCPHLHLSLQS-G---------SDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGF 299 (414)
T ss_pred hhhCCHHHHHHHHhcCccCCCeEECCCc-C---------ChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEEC
Confidence 2222467888888765 21122223322 1 23445454444433333345555554 33 345666
Q ss_pred -CCCHHHHHHhhccc
Q 039732 159 -SFNKERLKENLDIF 172 (214)
Q Consensus 159 -~~~~~~l~enl~a~ 172 (214)
..+.+.+++.++-+
T Consensus 300 PgET~ed~~~tl~~i 314 (414)
T TIGR01579 300 PGESEEDFQETLRMV 314 (414)
T ss_pred CCCCHHHHHHHHHHH
Confidence 36777777776643
No 217
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=25.50 E-value=4.4e+02 Score=22.75 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHH-cCC---ccEEEecC--CCHHHHHHHHhcCC-CCCeeeecccCcccc------h----HHHHHHHHh
Q 039732 38 YKGVWEAMEECQR-LGL---TKFIGVSN--FSSKKIEALLAFST-IPPSVNQVEMNPAWQ------Q----RQLREFCKS 100 (214)
Q Consensus 38 ~~e~~~~l~~l~~-~Gk---ir~iGiS~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~~ 100 (214)
.+++++++.++.+ .|+ |+++=+.+ .+.+.+.++.+..+ .+..++-++||.... . ....++.++
T Consensus 241 l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 241 IETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLMS 320 (355)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 7888888887654 443 45554543 45577666665543 345677788887542 1 345677788
Q ss_pred CCCeEEEeccCCCCCCCC
Q 039732 101 KSIIVTAFSPLGAAGSSW 118 (214)
Q Consensus 101 ~gi~vi~~~~l~~~G~L~ 118 (214)
+|+.+......+. .+..
T Consensus 321 ~gi~v~iR~~~G~-di~a 337 (355)
T TIGR00048 321 YGFTVTIRKSRGD-DIDA 337 (355)
T ss_pred CCCeEEEeCCCCc-chhh
Confidence 9999999988876 5443
No 218
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.39 E-value=4.5e+02 Score=22.75 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcC-C---ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccc-----h-----HHHHHHH
Q 039732 36 LDYKGVWEAMEECQRLG-L---TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQ-----Q-----RQLREFC 98 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~G-k---ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~-----~-----~~~~~~~ 98 (214)
...+++++++.+..++. + +-|+=+. |.+.+.+.++.+..+ .+..++-++||+... . ....+..
T Consensus 231 ~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L 310 (345)
T PRK14466 231 FSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYL 310 (345)
T ss_pred CCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCHHHHHHHHHHH
Confidence 34789999998865433 2 3334343 667777777777654 456788889996432 1 4567778
Q ss_pred HhCCCeEEEeccCCCCCCCC
Q 039732 99 KSKSIIVTAFSPLGAAGSSW 118 (214)
Q Consensus 99 ~~~gi~vi~~~~l~~~G~L~ 118 (214)
+++|+.+..+...+. .+..
T Consensus 311 ~~~gi~~tvR~s~G~-dI~a 329 (345)
T PRK14466 311 TSHGVFTTIRASRGE-DIFA 329 (345)
T ss_pred HHCCCcEEEeCCCCC-chhh
Confidence 899999999988876 5443
No 219
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=25.24 E-value=3.4e+02 Score=21.41 Aligned_cols=8 Identities=63% Similarity=0.783 Sum_probs=5.5
Q ss_pred cCCccEEE
Q 039732 51 LGLTKFIG 58 (214)
Q Consensus 51 ~Gkir~iG 58 (214)
+|.++-|+
T Consensus 111 ~~~~kiI~ 118 (225)
T cd00502 111 KGNTKIIG 118 (225)
T ss_pred hCCCEEEE
Confidence 56777776
No 220
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=25.22 E-value=1.7e+02 Score=23.34 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=18.2
Q ss_pred HHHHHHHH---hCCCeEEEeccCCCCCCCCC
Q 039732 92 RQLREFCK---SKSIIVTAFSPLGAAGSSWG 119 (214)
Q Consensus 92 ~~~~~~~~---~~gi~vi~~~~l~~~G~L~~ 119 (214)
..++.-+. +.|=.++.|+|+...|.++.
T Consensus 121 ~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts 151 (204)
T PF06080_consen 121 EGLFAGAARLLKPGGLLFLYGPFNRDGKFTS 151 (204)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcccCCEeCC
Confidence 45555544 33556899999987666653
No 221
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=25.19 E-value=52 Score=28.95 Aligned_cols=17 Identities=41% Similarity=0.405 Sum_probs=12.3
Q ss_pred cchHHHHHHHHhCCCeE
Q 039732 89 WQQRQLREFCKSKSIIV 105 (214)
Q Consensus 89 ~~~~~~~~~~~~~gi~v 105 (214)
.+...+.++|++.||..
T Consensus 76 ~~~~~lr~~~ke~Gi~~ 92 (423)
T COG0065 76 EQQKELRENAKEFGIVN 92 (423)
T ss_pred HHHHHHHHHHHHhCCee
Confidence 33477899999999543
No 222
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.18 E-value=5e+02 Score=23.29 Aligned_cols=16 Identities=6% Similarity=-0.155 Sum_probs=11.6
Q ss_pred HHHHHHHHhCCCeEEE
Q 039732 92 RQLREFCKSKSIIVTA 107 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~ 107 (214)
...+++++++|..+.+
T Consensus 126 ~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 126 ETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 5678888888876544
No 223
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.74 E-value=2.5e+02 Score=19.62 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=33.9
Q ss_pred ecCCCHHHHHHHHhcCCCCCeeeecccCc--ccchHHHHHHHHhCCCeEEEeccCC
Q 039732 59 VSNFSSKKIEALLAFSTIPPSVNQVEMNP--AWQQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 59 iS~~~~~~l~~~~~~~~~~~~~~q~~~~~--~~~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
.+.-+.+.+..++... .|+++-+.... .....++.++++++||++..|..-+
T Consensus 36 ~~~l~~~~l~~~~~~~--~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~a 89 (109)
T cd00248 36 LSDLDPEALLPLLAED--RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGA 89 (109)
T ss_pred cccCCHHHHHHHHhhC--CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3455677777776643 35666554443 2234788899999999998875543
No 224
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.73 E-value=4.5e+02 Score=22.56 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHcCC---ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccch---------HHHHHHH--H
Q 039732 37 DYKGVWEAMEECQRLGL---TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQQ---------RQLREFC--K 99 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gk---ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~---------~~~~~~~--~ 99 (214)
..+++++++..+.+.|+ ++|+=+. |.+.+.++++.+..+ ....++.++||..... ....+.. +
T Consensus 229 ~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~~~ 308 (336)
T PRK14470 229 PLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALARE 308 (336)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 47889999999887754 3444444 456666766666554 3457888888874321 3456666 3
Q ss_pred hCCCeEEEeccCCCCCCC
Q 039732 100 SKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 100 ~~gi~vi~~~~l~~~G~L 117 (214)
++|+.+..+...|. .+.
T Consensus 309 ~~g~~~~~R~~~G~-di~ 325 (336)
T PRK14470 309 LPGTPVVRRYSGGQ-DEH 325 (336)
T ss_pred cCCeEEEEECCCCC-ChH
Confidence 67999988888875 443
No 225
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=24.64 E-value=1e+02 Score=25.94 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=26.8
Q ss_pred EEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHH-HHcCCccEEEecCCC
Q 039732 10 YLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEEC-QRLGLTKFIGVSNFS 63 (214)
Q Consensus 10 ~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l-~~~Gkir~iGiS~~~ 63 (214)
+++|+|-.. .+|+.+.+++| .+.|.|+||=.-|..
T Consensus 32 L~VhSPvap-------------------T~el~~~l~~L~~~~G~VkyIVaPn~~ 67 (285)
T PF14234_consen 32 LWVHSPVAP-------------------TPELKAELDELEAQHGPVKYIVAPNKG 67 (285)
T ss_pred EEEECCCCC-------------------CHHHHHHHHHHhccCCceeEEEcCCcc
Confidence 788988643 36777777777 567999999988753
No 226
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=24.63 E-value=4.5e+02 Score=22.55 Aligned_cols=75 Identities=15% Similarity=0.056 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHhcCC-CCCeeeecccCcccchHHHHHHHHhCCCeEEEecc
Q 039732 35 PLDYKGVWEAMEECQRLGLTKFIGVSNFS---SKKIEALLAFST-IPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~~Gkir~iGiS~~~---~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 110 (214)
.++.+++.+.++++.+.| ++.|.+++=. ...+.++++.++ ..+.+ .+.-|-..-..+.++...+.|+..+..|.
T Consensus 45 ~~~~e~~~~ii~~~~~~g-~~~v~~~GGEPll~~~~~~il~~~~~~g~~~-~i~TNG~ll~~~~~~~L~~~g~~~v~iSl 122 (378)
T PRK05301 45 ELSTEEWIRVLREARALG-ALQLHFSGGEPLLRKDLEELVAHARELGLYT-NLITSGVGLTEARLAALKDAGLDHIQLSF 122 (378)
T ss_pred CCCHHHHHHHHHHHHHcC-CcEEEEECCccCCchhHHHHHHHHHHcCCcE-EEECCCccCCHHHHHHHHHcCCCEEEEEe
Confidence 355677777788777766 6788887421 122334444332 11111 22233322345677888888877666554
Q ss_pred C
Q 039732 111 L 111 (214)
Q Consensus 111 l 111 (214)
-
T Consensus 123 d 123 (378)
T PRK05301 123 Q 123 (378)
T ss_pred c
Confidence 4
No 227
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.58 E-value=3.1e+02 Score=23.06 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHcCCccEEEecCC-CHHHHHHHHhcCC---CCCeeeecccCcccch--HHHHHHHHhCCCeE
Q 039732 49 QRLGLTKFIGVSNF-SSKKIEALLAFST---IPPSVNQVEMNPAWQQ--RQLREFCKSKSIIV 105 (214)
Q Consensus 49 ~~~Gkir~iGiS~~-~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v 105 (214)
++..||-+|=.=.| +++.+..+++++. + |. |-++++. ...++.|.+.+|..
T Consensus 144 ~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~V-pV-----YiLLD~~~~~~Fl~Mc~~~~v~~ 200 (284)
T PF07894_consen 144 QQAQKVIAIVMDVFTDVDIFCDLLEAANKRGV-PV-----YILLDEQNLPHFLEMCEKLGVNL 200 (284)
T ss_pred HHhcceeEEEeeccccHHHHHHHHHHHHhcCC-cE-----EEEechhcChHHHHHHHHCCCCh
Confidence 34555544444444 4566666666552 2 11 2233333 45566666665554
No 228
>PF12728 HTH_17: Helix-turn-helix domain
Probab=24.52 E-value=1.5e+02 Score=17.09 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCccEEEecC---CCHHHHHHHHhc
Q 039732 43 EAMEECQRLGLTKFIGVSN---FSSKKIEALLAF 73 (214)
Q Consensus 43 ~~l~~l~~~Gkir~iGiS~---~~~~~l~~~~~~ 73 (214)
.++.+++++|.+..+++.. ++.+.+.+.++.
T Consensus 16 ~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 16 STVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred HHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 4577888999998888754 466666666553
No 229
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=24.51 E-value=2.5e+02 Score=23.66 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCC-ccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCCC
Q 039732 42 WEAMEECQRLGL-TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 42 ~~~l~~l~~~Gk-ir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
++.+.++++.-. =-+.|=|-++...+..+++.. ..+++|+....+..-..+.+.|+.+|+.++..+.+.+
T Consensus 206 ~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~--a~d~v~ik~~k~GGi~~~~~~a~~~gi~~~~~~~~es 276 (320)
T PRK02714 206 FDEMLQLSQDYQTPIALDESVANLAQLQQCYQQG--WRGIFVIKPAIAGSPSRLRQFCQQHPLDAVFSSVFET 276 (320)
T ss_pred HHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC--CCCEEEEcchhcCCHHHHHHHHHHhCCCEEEEechhh
Confidence 456666665433 235666677778887777754 2366666665544445677888999999888755543
No 230
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=24.40 E-value=4.9e+02 Score=22.93 Aligned_cols=94 Identities=11% Similarity=0.055 Sum_probs=57.4
Q ss_pred eeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCcc-EEEec---CCCHHHHHHHHhcCCC-CCee
Q 039732 6 YVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTK-FIGVS---NFSSKKIEALLAFSTI-PPSV 80 (214)
Q Consensus 6 yiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir-~iGiS---~~~~~~l~~~~~~~~~-~~~~ 80 (214)
..|++.||.....-.+. ....++..++.++..+.=.+- -|+=| ..+++.++++++...- +|-+
T Consensus 153 ~aD~Ialr~~S~DP~~~------------d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL 220 (389)
T TIGR00381 153 GADMVTIHLISTDPKLD------------DKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLL 220 (389)
T ss_pred CCCEEEEEecCCCcccc------------ccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEE
Confidence 36788888765332111 122456666666654433322 22222 4588999999998864 4544
Q ss_pred eecccCcccchHHHHHHHHhCCCeEEEeccCCC
Q 039732 81 NQVEMNPAWQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 81 ~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
+-..... .-..+.+.|+++|..++++++..-
T Consensus 221 ~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 221 ASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred EecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 4333221 126789999999999999988764
No 231
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=24.37 E-value=3.7e+02 Score=22.03 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHhcC
Q 039732 48 CQRLGLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 48 l~~~Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
+++.|.-+.+=+|+|+.+.+..+....
T Consensus 164 i~~~~~~~~viisSF~~~~l~~l~~~~ 190 (282)
T cd08605 164 CKQHAPGRRIMFSSFDPDAAVLLRALQ 190 (282)
T ss_pred HHhcCCCCeEEEEeCCHHHHHHHHhcC
Confidence 345566677889999999987776544
No 232
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.27 E-value=3.1e+02 Score=22.27 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=34.9
Q ss_pred HHHHHHHHHc-CCccEEEec---CCCHHHHHHHHhcCCCCCeeeecccCc--ccchHHHHHHHHhCCCeEEEe
Q 039732 42 WEAMEECQRL-GLTKFIGVS---NFSSKKIEALLAFSTIPPSVNQVEMNP--AWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 42 ~~~l~~l~~~-Gkir~iGiS---~~~~~~l~~~~~~~~~~~~~~q~~~~~--~~~~~~~~~~~~~~gi~vi~~ 108 (214)
++.+.++++. +.++...++ ......++.+.+. ++ +.+.+..+. ...-.+.+++++++|..+...
T Consensus 62 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 62 EEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL-GV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc-CC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3444454332 346666664 2345666666653 23 444433322 222367889999999877554
No 233
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.17 E-value=3.6e+02 Score=21.68 Aligned_cols=49 Identities=18% Similarity=0.069 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCeeee-----cccCcccch-----------HHHHHHHHhCCCeEEEeccCC
Q 039732 64 SKKIEALLAFSTIPPSVNQ-----VEMNPAWQQ-----------RQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 64 ~~~l~~~~~~~~~~~~~~q-----~~~~~~~~~-----------~~~~~~~~~~gi~vi~~~~l~ 112 (214)
...+.+.++..++++..+. .++|+.... ...+++|+..|...+...+..
T Consensus 49 ~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~ 113 (275)
T PRK09856 49 IKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAH 113 (275)
T ss_pred HHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4567777777776554433 224433221 457899999999998876654
No 234
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.17 E-value=4.7e+02 Score=22.59 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccc------h----HHHHHHHH
Q 039732 37 DYKGVWEAMEECQRL-GL---TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQ------Q----RQLREFCK 99 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~-Gk---ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~ 99 (214)
..+++++++.+...+ |+ |+++=+. |.+.+.+.++.+... .+..++-++||.... . ....++.+
T Consensus 239 ~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~ 318 (354)
T PRK14460 239 PLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLW 318 (354)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 478888888875443 32 4455454 455666766666553 345678888887532 1 34677788
Q ss_pred hCCCeEEEeccCCCCCCC
Q 039732 100 SKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 100 ~~gi~vi~~~~l~~~G~L 117 (214)
++|+.+..+...+. .+.
T Consensus 319 ~~Gi~vtir~~~G~-di~ 335 (354)
T PRK14460 319 SKGITAIIRKSKGQ-DIK 335 (354)
T ss_pred HCCCeEEEeCCCCC-chH
Confidence 88999998888876 444
No 235
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=24.13 E-value=2.9e+02 Score=22.65 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHc---CCccEEEecCCCHHHHHHHHhc---CCCCCeeeecccCcccchHHHHHHH----HhCCCeE
Q 039732 36 LDYKGVWEAMEECQRL---GLTKFIGVSNFSSKKIEALLAF---STIPPSVNQVEMNPAWQQRQLREFC----KSKSIIV 105 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~---Gkir~iGiS~~~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~~~~~~----~~~gi~v 105 (214)
++.+|-.+.++..++. ...-..|++..+.....+..+. .+++-.+++.++.....+.+++++. ...++.+
T Consensus 50 lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi 129 (284)
T cd00950 50 LSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPV 129 (284)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCE
Confidence 4455544444444433 3345689988766554444443 3343334444443322345555544 3458999
Q ss_pred EEeccC
Q 039732 106 TAFSPL 111 (214)
Q Consensus 106 i~~~~l 111 (214)
+.|..-
T Consensus 130 ~lYn~P 135 (284)
T cd00950 130 ILYNVP 135 (284)
T ss_pred EEEECh
Confidence 988654
No 236
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.03 E-value=3.8e+02 Score=22.29 Aligned_cols=34 Identities=12% Similarity=-0.058 Sum_probs=23.8
Q ss_pred HHHHH-HHHHHcCCccEEEecCCCHHHHHHHHhcC
Q 039732 41 VWEAM-EECQRLGLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 41 ~~~~l-~~l~~~Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
..+.+ +.+++.|..+.+=+++|+++.+..+....
T Consensus 165 ~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~ 199 (293)
T cd08572 165 FVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQ 199 (293)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhC
Confidence 33443 33456677888889999999887776654
No 237
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.92 E-value=3e+02 Score=21.42 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=41.4
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccC-c--ccchHHHHHHHHhCCCeEEEeccCCC
Q 039732 45 MEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMN-P--AWQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 45 l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~-~--~~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
..++.+.|-. .+-..-.+.+.+.++++-... .++.+... . ......+++.|++.||..+.++.++.
T Consensus 37 ~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~--v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 37 AQQLQALGAE-VVEADYDDPESLVAALKGVDA--VFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHTTTE-EEES-TT-HHHHHHHHTTCSE--EEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhhcccce-EeecccCCHHHHHHHHcCCce--EEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 4456666664 455555678888888885532 22222211 1 22347899999999999999999986
No 238
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.91 E-value=1.2e+02 Score=23.39 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 039732 33 LVPLDYKGVWEAMEECQRLGLTKFIGVSN 61 (214)
Q Consensus 33 ~~~~~~~e~~~~l~~l~~~Gkir~iGiS~ 61 (214)
..+++.+++-+.+.+++++| |+++.||.
T Consensus 128 i~~ld~~~v~~~~~~l~~~g-v~avAV~~ 155 (176)
T PF05378_consen 128 IEPLDEDEVREALRELKDKG-VEAVAVSL 155 (176)
T ss_pred ecCCCHHHHHHHHHHHHhCC-CCEEEEEC
Confidence 34677788889999999887 99999985
No 239
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=23.69 E-value=3.2e+02 Score=20.47 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNF 62 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~ 62 (214)
..++.+.|+.|+++| ++-.-+||-
T Consensus 31 ~pgv~e~L~~L~~~g-~~l~IvSN~ 54 (161)
T TIGR01261 31 EKGVIPALLKLKKAG-YKFVMVTNQ 54 (161)
T ss_pred CCCHHHHHHHHHHCC-CeEEEEeCC
Confidence 467889999999998 444556664
No 240
>PRK09449 dUMP phosphatase; Provisional
Probab=23.65 E-value=3.2e+02 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST 75 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~ 75 (214)
..++.+.|+.|+ +| ++-.-+||-....+...++..+
T Consensus 97 ~~g~~~~L~~L~-~~-~~~~i~Tn~~~~~~~~~l~~~~ 132 (224)
T PRK09449 97 LPGAVELLNALR-GK-VKMGIITNGFTELQQVRLERTG 132 (224)
T ss_pred CccHHHHHHHHH-hC-CeEEEEeCCcHHHHHHHHHhCC
Confidence 356777778887 55 5544456666666666566554
No 241
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=23.62 E-value=4e+02 Score=21.91 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHH--cCCc-cEEEecCCCHHHHHHHHhc---CCCCCeeeecccCcccchHHHHHHH----HhCCCeE
Q 039732 36 LDYKGVWEAMEECQR--LGLT-KFIGVSNFSSKKIEALLAF---STIPPSVNQVEMNPAWQQRQLREFC----KSKSIIV 105 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~--~Gki-r~iGiS~~~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~~~~~~----~~~gi~v 105 (214)
++.+|-.+.++..++ .|++ -..|++..+.+...+..+. .+..-.++..+|.....+.++++++ ..-++++
T Consensus 51 Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi 130 (289)
T PF00701_consen 51 LTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPI 130 (289)
T ss_dssp S-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEE
T ss_pred CCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCE
Confidence 344544444444333 3444 6778888777665544443 3444444455554444445555554 4568899
Q ss_pred EEeccC
Q 039732 106 TAFSPL 111 (214)
Q Consensus 106 i~~~~l 111 (214)
+.|..-
T Consensus 131 ~iYn~P 136 (289)
T PF00701_consen 131 IIYNNP 136 (289)
T ss_dssp EEEEBH
T ss_pred EEEECC
Confidence 888753
No 242
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=23.15 E-value=2.6e+02 Score=24.92 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=41.1
Q ss_pred cCCccEEEec----CCCHHHHHHHHhcCCCCCeeeecc----cCcccc---hHHHHHHHHhCCCeEEEeccC
Q 039732 51 LGLTKFIGVS----NFSSKKIEALLAFSTIPPSVNQVE----MNPAWQ---QRQLREFCKSKSIIVTAFSPL 111 (214)
Q Consensus 51 ~Gkir~iGiS----~~~~~~l~~~~~~~~~~~~~~q~~----~~~~~~---~~~~~~~~~~~gi~vi~~~~l 111 (214)
.=-++.++|. +..++.+++.++..+++..++.-. ...... ...++++|+++|+-+|---+.
T Consensus 198 ~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y 269 (459)
T COG1167 198 ALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY 269 (459)
T ss_pred HcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc
Confidence 3356788887 457888888888765554444333 333222 278999999999999875554
No 243
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.14 E-value=2.9e+02 Score=23.66 Aligned_cols=119 Identities=15% Similarity=0.242 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcC---CCCCee-eecccCcccc-------hHHHHHHHHhCCCeEE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFS---TIPPSV-NQVEMNPAWQ-------QRQLREFCKSKSIIVT 106 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~---~~~~~~-~q~~~~~~~~-------~~~~~~~~~~~gi~vi 106 (214)
.+-+.+..+..++.| +.++=+=.|.++.+..-.... ...... -...|.++.. -..+.++|++.|+.++
T Consensus 15 l~~A~~lI~~A~~aG-adaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 15 LELAKKLVDAAAEAG-ADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred HHHHHHHHHHHHHhC-CCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 566777777788888 577777788777763221111 000000 0001111111 1679999999999998
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHhCCCH---------HHHHHHHHhhcC--cEEeeCCCCHHHHHHhhccc
Q 039732 107 AFSPLGAAGSSWGTNQVMNNEALKQIADAHGKTV---------AQVCLRWIIEQG--AIVVAKSFNKERLKENLDIF 172 (214)
Q Consensus 107 ~~~~l~~~G~L~~~~~~~~~~~l~~~a~~~~~s~---------~q~al~~~l~~~--~~vl~g~~~~~~l~enl~a~ 172 (214)
+ +|+.. +.+. +..++|+.. .--.|+.+.+.+ ...-.|+++.+++++.++.+
T Consensus 94 s-tpfd~-------------~svd-~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i 155 (329)
T TIGR03569 94 S-TPFDL-------------ESAD-FLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVL 155 (329)
T ss_pred E-EeCCH-------------HHHH-HHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHH
Confidence 8 56543 1111 122232211 112445555544 55556888888888777654
No 244
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=22.96 E-value=8.5e+02 Score=25.16 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=41.8
Q ss_pred EEecCCCHHHHHHHHhcCCCCCeeeecccCcccc-hHHHHHHHHhCCCeEEEeccCCC
Q 039732 57 IGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ-QRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 57 iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
|-|=+..++.++.+++...-++.+|-+..--.+. -.++++.|++.|..+|.+..-..
T Consensus 434 lsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~ 491 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQ 491 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC
Confidence 4555889999999999865566777665533222 25799999999999999865444
No 245
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=22.95 E-value=2.4e+02 Score=25.04 Aligned_cols=53 Identities=15% Similarity=-0.045 Sum_probs=38.4
Q ss_pred EEEecCC---CHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEecc
Q 039732 56 FIGVSNF---SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 56 ~iGiS~~---~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 110 (214)
.|+.|-| .+..+.+.+...+- .+.-..+|++..+.++..+..+.||.+.++.-
T Consensus 38 ~i~~~~hl~~~ta~l~~~L~~~GA--~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~ 93 (413)
T cd00401 38 RIAGCLHMTVQTAVLIETLVALGA--EVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKG 93 (413)
T ss_pred EEEEEEcchHHHHHHHHHHHHcCC--EEEEEcCCCccchHHHHHHHHhcCceEEEEcC
Confidence 4667765 23445555565553 56667888888889999999999999999543
No 246
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.94 E-value=1.8e+02 Score=22.59 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
..++++.+..+++.| ++-|++++.....+.++...+
T Consensus 124 t~~~~~~~~~ak~~g-~~iI~IT~~~~s~l~~l~~~a 159 (197)
T PRK13936 124 SANVIQAIQAAHERE-MHVVALTGRDGGKMASLLLPE 159 (197)
T ss_pred cHHHHHHHHHHHHCC-CeEEEEECCCCChhhhhhccC
Confidence 467888888888887 888998887666666654434
No 247
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=22.87 E-value=4.2e+02 Score=22.34 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCeEEEeccCCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
.+.++.++++|+.+.++--++.
T Consensus 158 ~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 158 IRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHcCCcEEEEEEecC
Confidence 4678889999999888776654
No 248
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.78 E-value=2.6e+02 Score=19.10 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=55.8
Q ss_pred HHHHHHc-CCccEEEecCCCHHHHHHHHhcCCC-------------CCeeeecccCcccchHHHHHHHHhCCCeEEEecc
Q 039732 45 MEECQRL-GLTKFIGVSNFSSKKIEALLAFSTI-------------PPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSP 110 (214)
Q Consensus 45 l~~l~~~-Gkir~iGiS~~~~~~l~~~~~~~~~-------------~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 110 (214)
+..+.+. ..+.-.|+.+-+++..+.+.+..++ .++++-+.-.. ....+++..|-++|+.++.=+|
T Consensus 16 ~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 16 LRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp HHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEEEcC
Confidence 4455555 6778889998888887776655542 22333222211 2236889999999999999999
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHhCC
Q 039732 111 LGAAGSSWGTNQVMNNEALKQIADAHGK 138 (214)
Q Consensus 111 l~~~G~L~~~~~~~~~~~l~~~a~~~~~ 138 (214)
++. ......++.+.+++.|.
T Consensus 95 ~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 95 LAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSS--------SHHHHHHHHHHHHHHTS
T ss_pred CcC--------CHHHHHHHHHHHHHhCC
Confidence 985 22344666666777664
No 249
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=22.76 E-value=1.9e+02 Score=28.45 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC
Q 039732 35 PLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST 75 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~ 75 (214)
+.....+|....++++.|| ++=+++|+.+..+.++....
T Consensus 731 P~arr~lW~ii~~~~k~g~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 731 PKARRHLWDIIARLRKNGK--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred HHHHHHHHHHHHHHHhcCC--EEEEEcCCHHHHHHHhhhhh
Confidence 4557899999999999999 99999999999999988764
No 250
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=22.63 E-value=3e+02 Score=21.17 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCc---cEEEecCCCHHHHHHHHhcCCCCCeeeecccCcc----cch-----HHHHHHHHhCCCeEE
Q 039732 39 KGVWEAMEECQRLGLT---KFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPA----WQQ-----RQLREFCKSKSIIVT 106 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gki---r~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~----~~~-----~~~~~~~~~~gi~vi 106 (214)
....+.+.++++.|-= ..+|.+..+...+..+ +|+.+-+..+.. +.. ..++..+++.|+.++
T Consensus 134 ~~~~~~l~~l~~~G~~i~ld~~g~~~~~~~~l~~l------~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi 207 (236)
T PF00563_consen 134 AELLENLRRLRSLGFRIALDDFGSGSSSLEYLASL------PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVI 207 (236)
T ss_dssp HHHHHHHHHHHHCT-EEEEEEETSTCGCHHHHHHH------CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHhcCceeEeeeccCCcchhhhhhhc------ccccceeecccccccchhhHHHHHHHHHHHhhccccccc
Confidence 3455788888898852 2233333444444333 345554444433 221 578999999999999
Q ss_pred Ee
Q 039732 107 AF 108 (214)
Q Consensus 107 ~~ 108 (214)
+-
T Consensus 208 a~ 209 (236)
T PF00563_consen 208 AE 209 (236)
T ss_dssp EE
T ss_pred ee
Confidence 85
No 251
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.61 E-value=2.4e+02 Score=22.96 Aligned_cols=69 Identities=14% Similarity=-0.013 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEeccCC
Q 039732 41 VWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 41 ~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
-++.+.++. -+.=-+.|=|-++...+..+++.. ..+++|+....+. ....+.+.|+++|+.++..+.+.
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~--~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~e 237 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAG--ALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALE 237 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcC--CCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchh
Confidence 455565555 333335566666666777776654 2466766655432 23678899999999988765454
No 252
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=1.8e+02 Score=21.13 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=32.9
Q ss_pred CHHHHHHHHhcCCCCCeeeecccC--cccchHHHHHHHHhCCCeEEEeccCCC
Q 039732 63 SSKKIEALLAFSTIPPSVNQVEMN--PAWQQRQLREFCKSKSIIVTAFSPLGA 113 (214)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~q~~~~--~~~~~~~~~~~~~~~gi~vi~~~~l~~ 113 (214)
+++.+.+.++.+. .+.++-+.-. ...+...+...|++.||++-.|+.=+.
T Consensus 56 t~e~f~~vl~~a~-~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 56 TPEDFERVLAEAP-DVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred CHHHHHHHHhcCC-CceEEEEecCccccCCCHHHHHHHHHcCCccccccchhh
Confidence 4666777777664 2344444333 333347899999999999988876553
No 253
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=22.49 E-value=3.9e+02 Score=21.01 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHhcC
Q 039732 48 CQRLGLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 48 l~~~Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
+++.|....+=+|+|+.+.+..+.+..
T Consensus 112 l~~~~~~~~v~i~SF~~~~l~~~~~~~ 138 (226)
T cd08568 112 VEKFNALDRVIFSSFNHDALRELRKLD 138 (226)
T ss_pred HHHcCCCCcEEEEECCHHHHHHHHHhC
Confidence 445566677888888888888776654
No 254
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=22.46 E-value=4.3e+02 Score=21.55 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCccEEE----ecCC--CHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEE
Q 039732 38 YKGVWEAMEECQRLGLTKFIG----VSNF--SSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTA 107 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iG----iS~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~ 107 (214)
.++.+++|.+|++.=+-+-++ .-.| +.+.+....+.- ..+++|+-.--+- ..-+.+-||+++|++...
T Consensus 118 r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~--A~dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 118 REAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAK--AADMVQIKTPDLGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT---SSEEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcC--CcCEEEecCCCccchhhHHHHHHHHHhcCCceee
Confidence 566777776666532222222 2233 567787777765 3478888643322 225788999999999655
No 255
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=22.38 E-value=95 Score=21.22 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHcCCc
Q 039732 35 PLDYKGVWEAMEECQRLGLT 54 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~~Gki 54 (214)
.++..++-++++.|.++|+|
T Consensus 76 ~~~~~~v~~al~~L~~eG~I 95 (102)
T PF08784_consen 76 GMSENEVRKALDFLSNEGHI 95 (102)
T ss_dssp TS-HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHHHHHHhCCeE
Confidence 35578899999999999998
No 256
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=22.28 E-value=3e+02 Score=19.62 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCC
Q 039732 40 GVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTI 76 (214)
Q Consensus 40 e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~ 76 (214)
++-+..+++.++ .++-+|||..+++.+.+.++..+.
T Consensus 50 ~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 50 ALRDSLELFEAA-GAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred HHHHHHHHHHhC-CCEEEEecCCCHHHHHHHHHhcCC
Confidence 333334444443 478899998777777777665543
No 257
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=22.13 E-value=3.5e+02 Score=22.73 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhc----CCCC--CeeeecccCcccch-HHHHHHHHhCCCeE
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAF----STIP--PSVNQVEMNPAWQQ-RQLREFCKSKSIIV 105 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~----~~~~--~~~~q~~~~~~~~~-~~~~~~~~~~gi~v 105 (214)
..++.+.|..|+++|..-+|-- +-+...+.++++. .... |+++...+ .+. ..+...+++.|++.
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~S-~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~---~pk~~~i~~~~~~l~i~~ 103 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALAS-KNDEDDAKKVFERRKDFILQAEDFDARSINW---GPKSESLRKIAKKLNLGT 103 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEEc-CCCHHHHHHHHHhCccccCcHHHeeEEEEec---CchHHHHHHHHHHhCCCc
Confidence 5789999999999997655543 3455667777765 3322 45544443 233 44566666666654
No 258
>PF04337 DUF480: Protein of unknown function, DUF480; InterPro: IPR007432 This family consists of several proteins of uncharacterised function.; PDB: 3BZ6_A.
Probab=22.09 E-value=1.5e+02 Score=22.22 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=19.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccEEEec
Q 039732 31 EDLVPLDYKGVWEAMEECQRLGLTKFIGVS 60 (214)
Q Consensus 31 ~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS 60 (214)
+-+...+..++.++++.|+++|.|+..|.+
T Consensus 41 ~PVm~l~e~eV~~ald~L~~~~Lv~~~~~g 70 (148)
T PF04337_consen 41 EPVMNLSESEVQAALDELRAKGLVRESGFG 70 (148)
T ss_dssp SS-----HHHHHHHHHHHHHTTSEEE-E--
T ss_pred CccccCCHHHHHHHHHHHHHCcCeeecCCC
Confidence 334456678999999999999999885544
No 259
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=22.08 E-value=4.6e+02 Score=21.70 Aligned_cols=62 Identities=16% Similarity=0.043 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccch--HHHHHHHHhC--CCeEEEe
Q 039732 42 WEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSK--SIIVTAF 108 (214)
Q Consensus 42 ~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~--gi~vi~~ 108 (214)
-+++.++++...-+.||+|.++.+++.++.+. ..+++++. .+.+. .++++.+++. .+.+++.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld--~~~p~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLD--KFSPEELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEEC--CCCHHHHHHHHHHHhccCCCceEEEE
Confidence 45556666543334699999999998888753 24666654 22222 4555655543 4665554
No 260
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.05 E-value=4.1e+02 Score=21.11 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=21.9
Q ss_pred HHHHHhhcCcEEeeCCCCHHHHHHhhcc
Q 039732 144 CLRWIIEQGAIVVAKSFNKERLKENLDI 171 (214)
Q Consensus 144 al~~~l~~~~~vl~g~~~~~~l~enl~a 171 (214)
.++++..++...+||+.|++++.+..+.
T Consensus 101 v~~~~~~~~i~~iPG~~T~~E~~~A~~~ 128 (213)
T PRK06552 101 TAKICNLYQIPYLPGCMTVTEIVTALEA 128 (213)
T ss_pred HHHHHHHcCCCEECCcCCHHHHHHHHHc
Confidence 5666777777788999999988888754
No 261
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=22.05 E-value=3.4e+02 Score=23.80 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCC--cc-EEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEe
Q 039732 40 GVWEAMEECQRLGL--TK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 40 e~~~~l~~l~~~Gk--ir-~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~ 108 (214)
+-++.+.+|++.-. |. +.|-+.++......+++.. ..+++|....-+. ...++...|+.+|+.++..
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~--a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMG--CIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcC--CCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 34667777777654 22 3477778888888888865 3478888766543 2378899999999987553
No 262
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.75 E-value=1.5e+02 Score=20.57 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecC
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSN 61 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~ 61 (214)
.....+|..|..|.++|.|+.+-+.+
T Consensus 33 i~~~TVYR~L~~L~~~Gli~~~~~~~ 58 (116)
T cd07153 33 ISLATVYRTLELLEEAGLVREIELGD 58 (116)
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45778999999999999999987654
No 263
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.68 E-value=2.8e+02 Score=19.69 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCC
Q 039732 37 DYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFST 75 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~ 75 (214)
..+.+.+.++.+.+.|+--=+|.++|+.+++..+.+.++
T Consensus 76 ~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 76 NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 356788889999999999999999999988888877665
No 264
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=21.65 E-value=1.5e+02 Score=29.58 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=32.2
Q ss_pred eeeEEEEecCCCCCCCcccccCCCcCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCC
Q 039732 6 YVDLYLIHWPISAKPSEKLQSLIPKEDLVPLDYKGVWEAMEECQRLGLTKFIGVSNFS 63 (214)
Q Consensus 6 yiDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~Gkir~iGiS~~~ 63 (214)
.+|++++..|...-+ +.....+++.|..+.+.| +.|||.+|.
T Consensus 975 ~~~~l~lDEp~~~lD--------------~~~~~~~~~~l~~l~~~g--~~v~iisH~ 1016 (1047)
T PRK10246 975 RIDSLFLDEGFGTLD--------------SETLDTALDALDALNASG--KTIGVISHV 1016 (1047)
T ss_pred CCCEEEEeCCCCcCC--------------HHHHHHHHHHHHHHHHCC--CEEEEEecH
Confidence 468899998876554 233678999999998887 459999993
No 265
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=21.62 E-value=3.1e+02 Score=22.91 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcC
Q 039732 35 PLDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
++..+-+-++.-+++++|.. |=+|+|..+.++++++..
T Consensus 163 PVN~elLk~~I~~lk~~Gat--IifSsH~Me~vEeLCD~l 200 (300)
T COG4152 163 PVNVELLKDAIFELKEEGAT--IIFSSHRMEHVEELCDRL 200 (300)
T ss_pred hhhHHHHHHHHHHHHhcCCE--EEEecchHHHHHHHhhhh
Confidence 56666677778889999975 789999999999999864
No 266
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=21.61 E-value=1.7e+02 Score=18.82 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecC
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSN 61 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~ 61 (214)
....++=+.+.+|+++|+..||.-.+
T Consensus 32 ~k~R~vKKi~~~LV~Eg~l~yWSSGS 57 (67)
T PF08679_consen 32 AKPREVKKIVNELVNEGKLEYWSSGS 57 (67)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cCHHHHHHHHHHHHhhCeEEEEcCCC
Confidence 44678899999999999999986543
No 267
>PLN02494 adenosylhomocysteinase
Probab=21.37 E-value=2.4e+02 Score=25.56 Aligned_cols=56 Identities=16% Similarity=-0.075 Sum_probs=42.1
Q ss_pred cEEEecCCC---HHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEeccCC
Q 039732 55 KFIGVSNFS---SKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 55 r~iGiS~~~---~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 112 (214)
..||.|-|- +..+.+.+...+- .+.-..+|++..+.++.....+.||.|.+|..-.
T Consensus 47 ~~i~~~lHl~~kTa~L~~tL~~~GA--~v~~~~~Np~sTqd~vaaal~~~gi~vfa~~g~~ 105 (477)
T PLN02494 47 ARITGSLHMTIQTAVLIETLTALGA--EVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGET 105 (477)
T ss_pred CEEEEEEechHHHHHHHHHHHHcCC--EEEEEcCCCccchHHHHHHHHhCCceEEEecCCC
Confidence 357777663 3445555565653 6778899999999999999999999999986554
No 268
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.24 E-value=3.3e+02 Score=23.29 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHc--CCc-cEEEecCCCHHHHHHHHhcCCCCCeeeecccCccc---chHHHHHHHHhCCCeEEEe
Q 039732 40 GVWEAMEECQRL--GLT-KFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 40 e~~~~l~~l~~~--Gki-r~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~ 108 (214)
+-++.+.+++++ -.| -+.|=|-++...+.++++.. ..+++|....-+. ...++.+.|+.+|+.++..
T Consensus 220 ~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~--a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 220 DDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH--AVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAH 292 (352)
T ss_pred hhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeeccC
Confidence 346777777776 222 25566677888888888754 2477777766532 2367888899999888764
No 269
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=21.11 E-value=5.7e+02 Score=22.47 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEec
Q 039732 34 VPLDYKGVWEAMEECQRLGLTKFIGVS 60 (214)
Q Consensus 34 ~~~~~~e~~~~l~~l~~~Gkir~iGiS 60 (214)
...+.+++++.++.+++.| ++.|-+.
T Consensus 160 rsr~~e~Vl~Ei~~l~~~G-~~ei~l~ 185 (420)
T TIGR01578 160 ASYPPEKIVEKARQLVAEG-CKEIWIT 185 (420)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEE
Confidence 4566899999999999998 5555544
No 270
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=21.04 E-value=2.5e+02 Score=23.32 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccC
Q 039732 36 LDYKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMN 86 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~ 86 (214)
...+.+++.++.+.+.|+.-=||.++|+.++++.+.+.++--+.+.--+|+
T Consensus 77 T~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfS 127 (266)
T COG0289 77 TTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFS 127 (266)
T ss_pred CCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccch
Confidence 445778999999999999999999999999988887776533444444444
No 271
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=21.03 E-value=2.7e+02 Score=19.75 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHhcC
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNF-SSKKIEALLAFS 74 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~-~~~~l~~~~~~~ 74 (214)
..++.+.|+.|++.| ++-.-+||- .......+++..
T Consensus 31 ~~gv~e~L~~Lk~~g-~~l~i~Sn~~~~~~~~~~l~~~ 67 (128)
T TIGR01681 31 IKEIRDKLQTLKKNG-FLLALASYNDDPHVAYELLKIF 67 (128)
T ss_pred HHHHHHHHHHHHHCC-eEEEEEeCCCCHHHHHHHHHhc
Confidence 678999999999998 444445555 666666666654
No 272
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=20.96 E-value=99 Score=28.39 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEeccCC
Q 039732 92 RQLREFCKSKSIIVTAFSPLG 112 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~~~~l~ 112 (214)
+.+++.|+++||.||-=.++.
T Consensus 163 k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 163 KALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHHHHCCCEEEEEEccC
Confidence 789999999999998766554
No 273
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=20.82 E-value=2.7e+02 Score=24.63 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=37.6
Q ss_pred EEEecCC---CHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEec
Q 039732 56 FIGVSNF---SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAFS 109 (214)
Q Consensus 56 ~iGiS~~---~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 109 (214)
.|+.|-| .+..+.+.+...+- .+.-..+|++..+.++.....+.||.+.++.
T Consensus 34 ~i~~~~hl~~~Ta~l~~~L~~~GA--~v~~~~~np~stqd~vaaaL~~~gi~v~a~~ 88 (406)
T TIGR00936 34 RIAACLHVTVETAVLIETLVAGGA--EVAWTSCNPLSTQDDVAAALAKAGIPVFAWR 88 (406)
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--EEEEEccCCccccHHHHHHHHhCCceEEEec
Confidence 4666655 23445555555543 5666788888888999999999999999875
No 274
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.79 E-value=5.4e+02 Score=22.07 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCC----ccEEEec--CCCHHHHHHHHhcCC-CCCeeeecccCcccc------h----HHHHHHHH
Q 039732 37 DYKGVWEAMEECQRLGL----TKFIGVS--NFSSKKIEALLAFST-IPPSVNQVEMNPAWQ------Q----RQLREFCK 99 (214)
Q Consensus 37 ~~~e~~~~l~~l~~~Gk----ir~iGiS--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~ 99 (214)
..+++++++.+..+++. |+++=+. |.+.+.+.++.+..+ ....++-++||.... . ....+..+
T Consensus 228 ~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 307 (343)
T PRK14468 228 SIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGSPFQSSPRAQILAFADVLE 307 (343)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 47889999987766643 4566565 455666666665543 234677778887542 1 24556677
Q ss_pred hCCCeEEEeccCCCCCCC
Q 039732 100 SKSIIVTAFSPLGAAGSS 117 (214)
Q Consensus 100 ~~gi~vi~~~~l~~~G~L 117 (214)
++|+.+..+...+. .+.
T Consensus 308 ~~Gi~vtiR~~~g~-di~ 324 (343)
T PRK14468 308 RRGVPVSVRWSRGR-DVG 324 (343)
T ss_pred HCCCeEEEeCCCCc-chh
Confidence 88999999888876 444
No 275
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.77 E-value=3.3e+02 Score=19.55 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccchHHHHHHHHhCCCeEEEe
Q 039732 39 KGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVTAF 108 (214)
Q Consensus 39 ~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~ 108 (214)
..++..|.-+++.|++. .| ..++.++++....+..++--..+..+-...+..+|+++||+++-.
T Consensus 16 ~ki~~lL~la~ragklv-~G-----~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-KG-----TNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe-Ec-----HHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 45888888899999872 33 466667777666555555545444333367889999999997553
No 276
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=20.56 E-value=1.3e+02 Score=17.16 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHcCCcc
Q 039732 36 LDYKGVWEAMEECQRLGLTK 55 (214)
Q Consensus 36 ~~~~e~~~~l~~l~~~Gkir 55 (214)
.+...+...+.+|+++|.|+
T Consensus 29 is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 29 ISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp S-HHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHCcCcC
Confidence 34667888999999999885
No 277
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.51 E-value=4.7e+02 Score=21.19 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=36.3
Q ss_pred HHHHHHHHHcC-CccEEEecCCCHHHHHHHHhcCCCCCeeeecccCcccc--------------hHHHHHHHHhCCCeEE
Q 039732 42 WEAMEECQRLG-LTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--------------QRQLREFCKSKSIIVT 106 (214)
Q Consensus 42 ~~~l~~l~~~G-kir~iGiS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--------------~~~~~~~~~~~gi~vi 106 (214)
++.+..+++.+ .++..+.+..+.+.++.+.+. +++..-+-++.|.... -.+.+++|+++|+.+.
T Consensus 49 ~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 49 REAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred HHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 45555555533 477777776777778777664 3322222222222110 1467889999998765
Q ss_pred E
Q 039732 107 A 107 (214)
Q Consensus 107 ~ 107 (214)
.
T Consensus 128 ~ 128 (259)
T cd07939 128 V 128 (259)
T ss_pred E
Confidence 3
No 278
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.46 E-value=1.4e+02 Score=17.13 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhh
Q 039732 128 ALKQIADAHGKTVAQVCLRWIIE 150 (214)
Q Consensus 128 ~l~~~a~~~~~s~~q~al~~~l~ 150 (214)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4667888888887764 666643
No 279
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=20.36 E-value=2.4e+02 Score=22.43 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=7.6
Q ss_pred HHHHHHHHhCCCeEEE
Q 039732 92 RQLREFCKSKSIIVTA 107 (214)
Q Consensus 92 ~~~~~~~~~~gi~vi~ 107 (214)
.++.+||++||+.++.
T Consensus 175 ~~~~~fa~~h~l~~it 190 (203)
T COG0108 175 PELEEFAKEHGLPVIT 190 (203)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 3444455555544444
No 280
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=20.28 E-value=3.9e+02 Score=23.64 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHHHhhcC-cEEeeC-CCCHHHHHHhhc
Q 039732 123 VMNNEALKQIADAHGKTVAQVCLRWIIEQG-AIVVAK-SFNKERLKENLD 170 (214)
Q Consensus 123 ~~~~~~l~~~a~~~~~s~~q~al~~~l~~~-~~vl~g-~~~~~~l~enl~ 170 (214)
......+-.++++.+.|+.+ ....+..++ -.-+.| +++..+|.+..+
T Consensus 244 ~ldp~~v~~l~~~~~~s~~e-l~~~L~~~sGLlg~sG~s~D~Rel~~~~~ 292 (402)
T PRK00180 244 DIDPAIIPYLMEKLGMSVDE-IDNLLNKKSGLLGLSGVSSDMRDIEAAAE 292 (402)
T ss_pred CCChHHHHHHHHhcCCCHHH-HHHHHhccccceEecCCCCCHHHHHHHHH
Confidence 34557888889999999987 455555555 667788 889999977654
No 281
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=20.19 E-value=4.6e+02 Score=21.01 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=14.5
Q ss_pred CCccEEEecCCCHHHHHHHHhcC
Q 039732 52 GLTKFIGVSNFSSKKIEALLAFS 74 (214)
Q Consensus 52 Gkir~iGiS~~~~~~l~~~~~~~ 74 (214)
+..+.+=+++|+.+.+..+.+..
T Consensus 140 ~~~~~v~v~SF~~~~l~~l~~~~ 162 (249)
T PRK09454 140 GAAVPPLLSSFSEDALEAARQAA 162 (249)
T ss_pred CCCCCEEEEeCCHHHHHHHHHhC
Confidence 33345667778777777666643
No 282
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.08 E-value=2.4e+02 Score=19.57 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHh
Q 039732 38 YKGVWEAMEECQRLGLTKFIGVSNFSSKKIEALLA 72 (214)
Q Consensus 38 ~~e~~~~l~~l~~~Gkir~iGiS~~~~~~l~~~~~ 72 (214)
..++.++++.+++.| ++-|++++.....+.+..+
T Consensus 59 t~e~~~~~~~a~~~g-~~vi~iT~~~~s~la~~ad 92 (126)
T cd05008 59 TADTLAALRLAKEKG-AKTVAITNVVGSTLAREAD 92 (126)
T ss_pred CHHHHHHHHHHHHcC-CeEEEEECCCCChHHHhCC
Confidence 468999999999998 7889999876555555433
No 283
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.07 E-value=5.1e+02 Score=21.50 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHH--cCCcc-EEEecCCCHHHHHHHHh---cCCCCCeeeecccCcccchHHHHH----HHHhC-CC
Q 039732 35 PLDYKGVWEAMEECQR--LGLTK-FIGVSNFSSKKIEALLA---FSTIPPSVNQVEMNPAWQQRQLRE----FCKSK-SI 103 (214)
Q Consensus 35 ~~~~~e~~~~l~~l~~--~Gkir-~iGiS~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~~~~~~----~~~~~-gi 103 (214)
.++.+|-.+.++..++ .|++. ..|++..+.....++.+ ..+..-.++..+|..--.+.++++ .|... ++
T Consensus 49 ~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~l 128 (294)
T TIGR02313 49 SLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDF 128 (294)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCC
Confidence 4556776666666554 56653 45888766654433333 334444444445443223345544 45566 79
Q ss_pred eEEEeccC
Q 039732 104 IVTAFSPL 111 (214)
Q Consensus 104 ~vi~~~~l 111 (214)
.++.|..-
T Consensus 129 pv~iYn~P 136 (294)
T TIGR02313 129 PIIIYNIP 136 (294)
T ss_pred CEEEEeCc
Confidence 99998654
No 284
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.05 E-value=4.5e+02 Score=20.87 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=18.3
Q ss_pred HHHHHhhcCcEEeeCCCCHHHHHHhhcc
Q 039732 144 CLRWIIEQGAIVVAKSFNKERLKENLDI 171 (214)
Q Consensus 144 al~~~l~~~~~vl~g~~~~~~l~enl~a 171 (214)
.++++.+.+...+||+.|+.++.+..+.
T Consensus 100 vi~~a~~~~i~~iPG~~TptEi~~a~~~ 127 (212)
T PRK05718 100 LLKAAQEGPIPLIPGVSTPSELMLGMEL 127 (212)
T ss_pred HHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 4455555666677777777777766654
Done!