BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039733
MCYEQKEVGNGVAGEGHGLGSSEEDESRVDDAVNSNNGPGGTIQVHDGFQISQQQQPQGS
VIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHID
IVLTESSGSGSGSGSESGTQTKKSAKSKSNNGSENDSSSGDELENGSNGLSIRDGSDNGS
GTQSSWTKKAAEVDSPQPISPRYQSADDSICAQVIHTKPESFSNGWVHLNEPKDGLEQDE
QPDGVAMHKGLEMQVSENADLKCDCQHEKKSTQQTSKKKIKLPEVDSKPFDNKQLEVDNE
NICGKRRDQATSTSSANANHANPHAEIRDFDTPSGPSDISHVKETPCLELTLKRMRGVED
DQSAANEDCNVLRHSIFSAFSKYDLNLKALNFRVFSKLK

High Scoring Gene Products

Symbol, full name Information P value
PRR7
AT5G02810
protein from Arabidopsis thaliana 7.6e-44
PRR9
AT2G46790
protein from Arabidopsis thaliana 1.1e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039733
        (399 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat...   253  7.6e-44   2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat...   193  1.1e-12   1


>TAIR|locus:2151206 [details] [associations]
            symbol:PRR7 "pseudo-response regulator 7" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
            evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
            pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0009266 "response to temperature stimulus" evidence=IGI]
            [GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0009639 "response to red or far red light" evidence=RCA]
            [GO:0042752 "regulation of circadian rhythm" evidence=RCA]
            [GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
            InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
            PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
            GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
            EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
            PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
            ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
            EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
            GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
            InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
            ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
            GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
        Length = 727

 Score = 253 (94.1 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 77/234 (32%), Positives = 110/234 (47%)

Query:   164 ENGSNGLSIRDGSDNGSGTQSSWTKKAAEVD-SPQPISPRYQSADDSICAQVIHTKPESF 222
             ENGS GL+  DGS +GSG QSSWTKKA +VD SP+ +S       DS CAQV+H+ PE  
Sbjct:   238 ENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVS--LWDRVDSTCAQVVHSNPEFP 295

Query:   223 SNGWVHLNEPKDGLEQDEQPDGVAMHKGLEMQVSENADLKCDCQHEXXXXXXXXXXXIKL 282
             SN  V     K+  E D++ + V M + LE+ +  N DL  + + E              
Sbjct:   296 SNQLVAPPAEKETQEHDDKFEDVTMGRDLEISIRRNCDLALEPKDEPLSKTTGIMRQDNS 355

Query:   283 PEVDSKPFDNK----QLEVDNENICGKRRDQXXXXXXXXXXXXXXX--------XEIRDF 330
              E  S  +  K     L++ +E+   K+  +                         ++  
Sbjct:   356 FEKSSSKWKMKVGKGPLDLSSESPSSKQMHEDGGSSFKAMSSHLQDNREPEAPNTHLKTL 415

Query:   331 DTPSGPSDISHVKETPCLELTLKRMRGVEDDQSAANEDCNVLRHSIFSAFSKYD 384
             DT      IS  +E   +E + KR RG +DD +   +D NVLR S  SAFS+Y+
Sbjct:   416 DTNEASVKIS--EELMHVEHSSKRHRGTKDDGTLVRDDRNVLRRSEGSAFSRYN 467

 Score = 246 (91.7 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 50/102 (49%), Positives = 64/102 (62%)

Query:    26 ESRVDDAVNSNNGPGGTIQVHDGFXXXXX---XXXXGSVIRWERFLPTRSLKVLLVENDD 82
             ESR +         G T+ V +G              + + WERFL  R+++VLLVENDD
Sbjct:    28 ESRTEKHSEEEKTNGITMDVRNGSSGGLQIPLSQQTAATVCWERFLHVRTIRVLLVENDD 87

Query:    83 STRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124
              TR++V+ALLRNCSYEV   +N + AWK+LEDL NHIDIVLT
Sbjct:    88 CTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLT 129

 Score = 46 (21.3 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query:   165 NGSNGLSIRDGSDNGSG 181
             NG N   +  GSDNG+G
Sbjct:   625 NGMNAGGMNMGSDNGAG 641

 Score = 40 (19.1 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query:   164 ENGSNGLSIRDGSDNGSGTQS 184
             +NG+      DGS +GSG+ S
Sbjct:   637 DNGAGKNGNGDGSGSGSGSGS 657


>TAIR|locus:2044376 [details] [associations]
            symbol:PRR9 "pseudo-response regulator 9" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
            evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0009266 "response to temperature stimulus" evidence=IGI]
            [GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
            [GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
            PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
            GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
            GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
            GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
            EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
            PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
            ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
            EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
            GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
            KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
            Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
        Length = 468

 Score = 193 (73.0 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/78 (43%), Positives = 55/78 (70%)

Query:    47 DGFXXXXXXXXXGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSL 106
             DG            V++WE++LP   L+VLLVE+D STR +++ALLR C Y+V AV++ L
Sbjct:    11 DGMETIKNRVKSSEVVQWEKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGL 70

Query:   107 HAWKILEDLTNHIDIVLT 124
              AW++L++ +++ID++LT
Sbjct:    71 AAWEVLKEKSHNIDLILT 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.131   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      399       328   0.00088  116 3  11 23  0.48    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  247 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.34u 0.13s 26.47t   Elapsed:  00:00:02
  Total cpu time:  26.34u 0.13s 26.47t   Elapsed:  00:00:02
  Start:  Sat May 11 13:58:59 2013   End:  Sat May 11 13:59:01 2013

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