BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039733
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
          Length = 246

 Score = 29.3 bits (64), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 326 EIRDFDTPSGPSDISHVKETPC---LELTLKRMRGVEDDQSAAN--EDCNVLRHSIFSAF 380
           E  +F TP G  +   +KE+P    L+L + +++  E  +SA +  +  N+  H   +  
Sbjct: 88  EKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKG 147

Query: 381 SKYDLNLKALNFRVFS 396
            KY L     N+  +S
Sbjct: 148 DKYSLLGYPYNYSAYS 163


>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
           Complex With Trna(Gln)
 pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
           Complex With Trna(Gln)
          Length = 619

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 326 EIRDFDTPSGPSDISHVKETPCLELTLKRMRGVEDDQSAANEDCNVL 372
           E+ D+    G S I H  E P   +T + +RG+ D   A+  D  V+
Sbjct: 323 EMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVGASQGDAVVM 369


>pdb|1DT2|A Chain A, Crystal Structure Of Exfoliative Toxin B
          Length = 245

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 326 EIRDFDTPSGPSDISHVKETPC---LELTLKRMRGVEDDQSAAN--EDCNVLRHSIFSAF 380
           E  +F TP G  +   +KE+P    L+L + +++  E  +SA +  +  N+  H      
Sbjct: 87  EKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIQKG 146

Query: 381 SKYDLNLKALNFRVFS 396
            KY L     N+  +S
Sbjct: 147 DKYSLLGYPYNYSAYS 162


>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
           Rhodococcus Sp.
 pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
           Rhodococcus Sp.
 pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
           Rhodococcus Sp.
 pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
           Rhodococcus Sp. Bound To Indole
 pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
           Rhodococcus Sp. Bound To Indole
 pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
           Rhodococcus Sp. Bound To Indole
          Length = 470

 Score = 28.1 bits (61), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 172 IRDGSDNGSGTQSSWTKKAAEVDSP 196
           +RDG+ NGSGT  + T  AA+  SP
Sbjct: 441 LRDGNSNGSGTADASTPAAAKSKSP 465


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,496,977
Number of Sequences: 62578
Number of extensions: 377140
Number of successful extensions: 802
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)