BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039733
(399 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 99/149 (66%), Gaps = 14/149 (9%)
Query: 1 MCYEQKEVGNGVAGEGHGLGSSEEDESRVDD-AVNSNNGPGGTIQVHDGFQISQQQQ-PQ 58
MC+ E G+ V E GSSEEDE RV+D A N+NN QISQQQQ P
Sbjct: 1 MCFNNIETGDEVETERQVFGSSEEDEFRVEDTARNTNN-----------VQISQQQQQPL 49
Query: 59 GSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNH 118
V++WER+LP RSLKVLLVENDDSTRH+V+ALL+NCSYEVTAV + L AW+ILED +
Sbjct: 50 AHVVKWERYLPVRSLKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSC 109
Query: 119 IDIVLTESSGS-GSGSGSESGTQTKKSAK 146
ID+VLTE SG+G S + K+ K
Sbjct: 110 IDLVLTEVDMPVHSGTGLLSKIMSHKTLK 138
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 116/247 (46%), Gaps = 60/247 (24%)
Query: 142 KKSAKSKSNNGSENDSSSGDELEN---GSNGLSIRDG-SDNGSGTQSSWTKKAAEVDSPQ 197
KKS K +S GSEND+S DE N S GLS +DG SDNGSGTQSSWTK+A++ S
Sbjct: 201 KKSVKPESTQGSENDASISDEHRNESGSSGGLSNQDGGSDNGSGTQSSWTKRASDTKSTS 260
Query: 198 PISPRYQSADDSICAQVIHTKPESFSNGWVHLNEPKDGLEQDEQPDGVAMHKGLEMQVSE 257
P S ++ A + K ++ NG H+N K+ +Q EQ G G+ M S+
Sbjct: 261 P-SNQFPDAPN---------KKGTYENGCAHVNRLKEAEDQKEQI-GTGSQTGMSM--SK 307
Query: 258 NADLKCDCQHEKKSTQQTSKKKIKLPEVDSKPFDNKQLEVDNENICGKRRDQATSTSSAN 317
A+ D + K + Q LE +N++ + N
Sbjct: 308 KAEEPGDLEKNAKYSVQA-------------------LERNNDD-------------TLN 335
Query: 318 ANHANPHAEIRDFDTPSGPSDISHVKETPCLELTLKRMRGVEDDQSAANEDCNVLRHSIF 377
+ N E + PS S+ ++ LE TLK+ R +D+ D +VLRHS
Sbjct: 336 RSSGNSQVESK------APS--SNREDLQSLEQTLKKTR---EDRDYKVGDRSVLRHSNL 384
Query: 378 SAFSKYD 384
SAFSKY+
Sbjct: 385 SAFSKYN 391
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 78/125 (62%), Gaps = 14/125 (11%)
Query: 6 KEVGNGVAGEGHGLGSSEEDESRVDDAVNSNNG-----PGGTIQVHDGFQISQQQQPQGS 60
K GNG+ GH SEE+E R NG P G + Q +Q++ Q
Sbjct: 18 KGTGNGILENGHS-HKSEEEEWR--------NGMGEDLPNGHSTPPEPQQTDEQKEHQVR 68
Query: 61 VIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHID 120
++RWERFLP ++L+VLLVENDDSTR VVSALLR C YEV N LHAW+ LEDL NHID
Sbjct: 69 IVRWERFLPVKTLRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHID 128
Query: 121 IVLTE 125
+VLTE
Sbjct: 129 LVLTE 133
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 123/263 (46%), Gaps = 26/263 (9%)
Query: 140 QTKKSAKSKSNNGSENDSSSGDELENG----------SNGLSIRDGSDNGSGTQSSWTKK 189
+T+K K K ++ EN+S S ++ E+ S G + RDGSDNGSGTQSSWTK+
Sbjct: 216 RTQKCTKPKVDDEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSGTQSSWTKR 275
Query: 190 AAEVDSPQPISPRYQS-ADDSICAQVIHTKPESFSNGWVHLNEPKDGLEQDEQPDGVAMH 248
A E+DSPQ +SP S DS CAQVIH E SN W+ + G + E D +M
Sbjct: 276 AVEIDSPQQMSPDQPSDLPDSTCAQVIHPTSEICSNRWLPTANKRSGKKHKENNDD-SMG 334
Query: 249 KGLEMQVSENADLKCDCQHEKKSTQQTSKKKIKLPEVDSKPFDNKQLEVDNENICGKRRD 308
K LE+ N+ ++ + S T K+ L P E D+ N +
Sbjct: 335 KYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETL-----MPQSKTTRETDSRNTQNEPTT 389
Query: 309 QATSTSSANANHANPHAEIRDFDTPSGPSDIS--------HVKETPCLELTLKRMRGVED 360
Q S+ A + +R + P S + + + EL LKR++
Sbjct: 390 QTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLIDMTSEELGLKRLK-TTG 448
Query: 361 DQSAANEDCNVLRHSIFSAFSKY 383
+ +++ N+L+ S SAF++Y
Sbjct: 449 SATEIHDERNILKRSDLSAFTRY 471
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 77/125 (61%), Gaps = 14/125 (11%)
Query: 6 KEVGNGVAGEGHGLGSSEEDESRVDDAVNSNNG-----PGGTIQVHDGFQISQQQQPQGS 60
K GNG+ GH EE+E R NG P G + Q +Q++ Q
Sbjct: 18 KGTGNGILENGHS-HKPEEEEWR--------NGMGEDLPNGHSTPPEPQQTDEQKEHQVQ 68
Query: 61 VIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHID 120
++RWERFLP ++L+VLLVENDDSTR VVSALLR C YEV N LHAW+ LEDL NHID
Sbjct: 69 IVRWERFLPVKTLRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHID 128
Query: 121 IVLTE 125
+VLTE
Sbjct: 129 LVLTE 133
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 123/263 (46%), Gaps = 26/263 (9%)
Query: 140 QTKKSAKSKSNNGSENDSSSGDELENG----------SNGLSIRDGSDNGSGTQSSWTKK 189
+T+K K K ++ EN+S S ++ E+ S G + RDGSDNGSGTQSSWTK+
Sbjct: 216 RTQKCTKPKVDDEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSGTQSSWTKR 275
Query: 190 AAEVDSPQPISPRYQS-ADDSICAQVIHTKPESFSNGWVHLNEPKDGLEQDEQPDGVAMH 248
A E+DSPQ +SP S DS CAQVIH E SN W+ + G + E D +M
Sbjct: 276 AVEIDSPQQMSPDQPSDLPDSTCAQVIHPTSEICSNRWLPTANKRSGKKHKENNDD-SMG 334
Query: 249 KGLEMQVSENADLKCDCQHEKKSTQQTSKKKIKLPEVDSKPFDNKQLEVDNENICGKRRD 308
K LE+ N+ ++ + S T K+ L P E D+ N +
Sbjct: 335 KYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETL-----MPQSKTTRETDSRNTQNEPTT 389
Query: 309 QATSTSSANANHANPHAEIRDFDTPSGPSDIS--------HVKETPCLELTLKRMRGVED 360
Q S+ A + +R + P S + + + EL LKR++
Sbjct: 390 QTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLIDMTSEELGLKRLK-TTG 448
Query: 361 DQSAANEDCNVLRHSIFSAFSKY 383
+ +++ N+L+ S SAF++Y
Sbjct: 449 SATEIHDERNILKRSDLSAFTRY 471
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Query: 26 ESRVDDAVNSNNGPGGTIQVHDG----FQISQQQQPQGSVIRWERFLPTRSLKVLLVEND 81
ESR + G T+ V +G QI QQ +V WERFL R+++VLLVEND
Sbjct: 28 ESRTEKHSEEEKTNGITMDVRNGSSGGLQIPLSQQTAATVC-WERFLHVRTIRVLLVEND 86
Query: 82 DSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
D TR++V+ALLRNCSYEV +N + AWK+LEDL NHIDIVLTE
Sbjct: 87 DCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTE 130
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 137/262 (52%), Gaps = 25/262 (9%)
Query: 140 QTKKSAKSKSNNGSENDSSSGDELENGSNGLSIRDGSDNGSGTQSSWTKKAAEV-DSPQP 198
QT+KS KSKS S+ DS S DE ENGS GL+ DGS +GSG QSSWTKKA +V DSP+
Sbjct: 214 QTQKSVKSKSIKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRA 273
Query: 199 ISPRYQSADDSICAQVIHTKPESFSNGWVHLNEPKDGLEQDEQPDGVAMHKGLEMQVSEN 258
+S DS CAQV+H+ PE SN V K+ E D++ + V M + LE+ + N
Sbjct: 274 VS--LWDRVDSTCAQVVHSNPEFPSNQLVAPPAEKETQEHDDKFEDVTMGRDLEISIRRN 331
Query: 259 ADLKCDCQHEKKST------------QQTSKKKIKLP----EVDSKPFDNKQLEVDNENI 302
DL + + E S + +SK K+K+ ++ S+ +KQ+ D
Sbjct: 332 CDLALEPKDEPLSKTTGIMRQDNSFEKSSSKWKMKVGKGPLDLSSESPSSKQMHEDG--- 388
Query: 303 CGKRRDQATSTSSANANHANPHAEIRDFDTPSGPSDISHVKETPCLELTLKRMRGVEDDQ 362
G +S N P+ ++ DT IS +E +E + KR RG +DD
Sbjct: 389 -GSSFKAMSSHLQDNREPEAPNTHLKTLDTNEASVKIS--EELMHVEHSSKRHRGTKDDG 445
Query: 363 SAANEDCNVLRHSIFSAFSKYD 384
+ +D NVLR S SAFS+Y+
Sbjct: 446 TLVRDDRNVLRRSEGSAFSRYN 467
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 134/259 (51%), Gaps = 27/259 (10%)
Query: 140 QTKKSAKSKSNNGSENDSSSGDELENGSN----GLSIRDGSDNGSGT--QSSWTKKAAEV 193
QT+K AKSKS G E++++SG ++ + GL+ RDGSDNGSGT QSSWTK+A E+
Sbjct: 197 QTQKCAKSKS--GDESNNNSGSNDDDDDDGVIMGLNARDGSDNGSGTQAQSSWTKRAVEI 254
Query: 194 DSPQPISPRYQSAD--DSICAQVIHTKPESFSNGWVHLNEPKDGLEQDEQPDGVAMHKGL 251
DSPQ +SP Q AD DS CAQVIH K + SN W+ K+ +Q E D K L
Sbjct: 255 DSPQAMSPD-QLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKETNDDFK-GKDL 312
Query: 252 EMQVSENADLKCDCQHEKKSTQQTSKKKIKLPEVDSKPFDNKQLEVDNENICGKRRDQAT 311
E+ N + ++S + T ++ + P N E EN+ + +A
Sbjct: 313 EIGSPRNLNTAYQSSPNERSIKPTDRR-------NEYPLQNNSKEAAMENL-EESSVRAA 364
Query: 312 STSSANANHANPHAEIRDFDTPSGPSDISHVKE------TPCLELTLKRMRGVEDDQSAA 365
+ A + + R + P+ S + K+ P LEL+LKR R DD +A
Sbjct: 365 DLIGSMAKNMDAQQAARATNAPNCSSKVPEGKDKNRDNIMPSLELSLKRSRSTGDDANAI 424
Query: 366 NED-CNVLRHSIFSAFSKY 383
E+ NVLR S SAF++Y
Sbjct: 425 QEEQRNVLRRSDLSAFTRY 443
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 9/116 (7%)
Query: 10 NGVAGEGHGLGSSEEDESRVDDAVNSNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLP 69
N AG G+G + +DAV GG DG IS Q+P + WERF+
Sbjct: 8 NQTAGSALGVGVGD-----ANDAVPG--AGGGGYSDPDGGPISGVQRP--PQVCWERFIQ 58
Query: 70 TRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
+++KVLLV++DDSTR VVSALLR+C YEV N AW LED+ N ID+VLTE
Sbjct: 59 KKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTE 114
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 133/259 (51%), Gaps = 27/259 (10%)
Query: 140 QTKKSAKSKSNNGSENDSSSGDELENGSN----GLSIRDGSDNGSGT--QSSWTKKAAEV 193
QT+K AKSKS G E+++++G ++ + GL+ RDGSDNGSGT QSSWTK+A E+
Sbjct: 197 QTQKCAKSKS--GDESNNNNGSNDDDDDDGVIMGLNARDGSDNGSGTQAQSSWTKRAVEI 254
Query: 194 DSPQPISPRYQSAD--DSICAQVIHTKPESFSNGWVHLNEPKDGLEQDEQPDGVAMHKGL 251
DSPQ +SP Q AD DS CAQVIH K + SN W+ K+ +Q E D K L
Sbjct: 255 DSPQAMSPD-QLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKETNDDFK-GKDL 312
Query: 252 EMQVSENADLKCDCQHEKKSTQQTSKKKIKLPEVDSKPFDNKQLEVDNENICGKRRDQAT 311
E+ N + ++S + T ++ + P N E EN+ + +A
Sbjct: 313 EIGSPRNLNTAYQSSPNERSIKPTDRR-------NEYPLQNNSKEAAMENL-EESSVRAA 364
Query: 312 STSSANANHANPHAEIRDFDTPSGPSDISHVKE------TPCLELTLKRMRGVEDDQSAA 365
+ A + + R + P+ S + K+ P LEL+LKR R D +A
Sbjct: 365 DLIGSMAKNMDAQQAARAANAPNCSSKVPEGKDKNRDNIMPSLELSLKRSRSTGDGANAI 424
Query: 366 NED-CNVLRHSIFSAFSKY 383
E+ NVLR S SAF++Y
Sbjct: 425 QEEQRNVLRRSDLSAFTRY 443
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 9/116 (7%)
Query: 10 NGVAGEGHGLGSSEEDESRVDDAVNSNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLP 69
N AG G+G + +DAV GG DG IS Q+P + WERF+
Sbjct: 8 NQTAGSALGVGVGD-----ANDAVPG--AGGGGYSDPDGGPISGVQRP--PQVCWERFIQ 58
Query: 70 TRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
+++KVLLV++DDSTR VVSALLR+C YEV N AW LED+ N ID+VLTE
Sbjct: 59 KKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTE 114
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 59/79 (74%)
Query: 47 DGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSL 106
DG + + + V++WE++LP L+VLLVE+D STR +++ALLR C Y+V AV++ L
Sbjct: 11 DGMETIKNRVKSSEVVQWEKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGL 70
Query: 107 HAWKILEDLTNHIDIVLTE 125
AW++L++ +++ID++LTE
Sbjct: 71 AAWEVLKEKSHNIDLILTE 89
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 61 VIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHID 120
+++WERFLP +L+VLLVE DDSTR +++ALLR CSY V AV + L AW++L+ +D
Sbjct: 38 LVKWERFLPKIALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVD 97
Query: 121 IVLTE 125
++LTE
Sbjct: 98 LILTE 102
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 63 RWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIV 122
R R LP ++VLL E DDSTRH++ ALLR C Y V A ++ + AW IL++ + +ID+V
Sbjct: 33 RETRMLPRMPVRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLV 92
Query: 123 LTE 125
LTE
Sbjct: 93 LTE 95
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
L+VL+V++D + ++ +L+ CSYEVT + A ++L + + DIV+++
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISD 63
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
++VL V++D + ++ +LLR+C Y VT + A ++L + N D+V+++
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISD 69
>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana
GN=APRR1 PE=1 SV=1
Length = 618
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 67 FLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
F+ +++LL +ND ++ V LL CSY+VTAV ++ L IDI+L E
Sbjct: 13 FIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAE 71
>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp.
japonica GN=PRR1 PE=2 SV=2
Length = 518
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 67 FLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
F+ +++LL ++D S+ V LL NCSY+VT + +L IDI+L E
Sbjct: 22 FVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAE 80
>sp|Q23917|PDE2_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium
discoideum GN=regA PE=1 SV=1
Length = 793
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125
+++L+ ++DD R +++ LL+ Y VT V N AW+ + D+VLT+
Sbjct: 160 VRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTD 212
>sp|P62722|VIRG_AGRT9 Regulatory protein VirG OS=Agrobacterium tumefaciens (strain 15955)
GN=virG PE=3 SV=1
Length = 267
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESSGSGSGSG 134
VLLV++D + RH++ L +++VTAVA+S ++L T + G
Sbjct: 30 VLLVDDDVAMRHLIIEYLTIHAFKVTAVADSTQFTRVLSSAT-------VDVVVVDLNLG 82
Query: 135 SESGTQTKKSAKSKSNNGSENDSSSGDELENGSNGLSIRDGSDNGSGTQSSWTKKAAEVD 194
E G + ++ +KS+ SGD LE +++ G+ + S + A +
Sbjct: 83 REDGLEIVRNLAAKSD--IPIIIISGDRLEETDKVVALELGASDFIAKPFSIREFLARIR 140
Query: 195 SPQPISPRYQSADD--SIC 211
+ P + D S C
Sbjct: 141 VALRVRPNVVRSKDRRSFC 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,822,870
Number of Sequences: 539616
Number of extensions: 7054355
Number of successful extensions: 35389
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 361
Number of HSP's that attempted gapping in prelim test: 26804
Number of HSP's gapped (non-prelim): 6268
length of query: 399
length of database: 191,569,459
effective HSP length: 120
effective length of query: 279
effective length of database: 126,815,539
effective search space: 35381535381
effective search space used: 35381535381
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)