Query 039733
Match_columns 399
No_of_seqs 301 out of 1656
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 12:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11091 aerobic respiration c 98.4 4.5E-07 9.7E-12 98.9 7.2 109 12-127 466-578 (779)
2 PRK11466 hybrid sensory histid 98.2 3.5E-06 7.6E-11 93.1 7.5 108 13-127 624-735 (914)
3 TIGR02956 TMAO_torS TMAO reduc 98.1 4.7E-06 1E-10 92.4 7.5 108 12-127 644-755 (968)
4 PRK15347 two component system 98.1 8.7E-06 1.9E-10 89.7 8.4 53 73-127 691-743 (921)
5 COG0745 OmpR Response regulato 98.1 1.1E-05 2.5E-10 77.2 7.7 52 73-127 1-52 (229)
6 PRK09959 hybrid sensory histid 98.1 7E-06 1.5E-10 93.6 7.3 110 13-127 898-1011(1197)
7 PF00072 Response_reg: Respons 97.9 3E-05 6.5E-10 63.0 7.0 51 75-127 1-52 (112)
8 COG0784 CheY FOG: CheY-like re 97.9 4.7E-05 1E-09 63.3 8.1 54 72-127 5-60 (130)
9 COG4753 Response regulator con 97.8 2.8E-05 6.1E-10 81.9 6.0 54 72-127 1-57 (475)
10 PRK13837 two-component VirA-li 97.7 8.6E-05 1.9E-09 82.5 8.7 111 13-126 637-751 (828)
11 PRK10841 hybrid sensory kinase 97.7 8.3E-05 1.8E-09 84.0 8.3 54 72-127 801-854 (924)
12 PRK13557 histidine kinase; Pro 97.7 0.00013 2.9E-09 74.4 8.6 109 13-127 356-469 (540)
13 COG2204 AtoC Response regulato 97.7 0.00012 2.6E-09 77.1 7.9 54 72-127 4-57 (464)
14 PRK10618 phosphotransfer inter 97.6 6E-05 1.3E-09 85.1 5.9 99 13-127 634-736 (894)
15 PRK11107 hybrid sensory histid 97.6 0.00018 4E-09 79.2 8.2 54 72-127 667-720 (919)
16 smart00448 REC cheY-homologous 97.5 0.00078 1.7E-08 44.0 7.4 51 74-126 2-52 (55)
17 PRK10701 DNA-binding transcrip 97.4 0.00056 1.2E-08 63.0 8.0 53 73-127 2-54 (240)
18 TIGR02154 PhoB phosphate regul 97.4 0.00064 1.4E-08 60.9 8.1 53 73-127 3-55 (226)
19 PRK10766 DNA-binding transcrip 97.4 0.00071 1.5E-08 61.1 8.3 54 72-127 2-55 (221)
20 PRK10161 transcriptional regul 97.4 0.00066 1.4E-08 61.8 8.1 53 73-127 3-55 (229)
21 PRK10529 DNA-binding transcrip 97.4 0.00074 1.6E-08 61.2 8.1 53 73-127 2-54 (225)
22 PRK13856 two-component respons 97.4 0.0007 1.5E-08 62.8 8.1 53 73-127 2-54 (241)
23 PRK10816 DNA-binding transcrip 97.4 0.00072 1.6E-08 61.3 7.9 52 74-127 2-53 (223)
24 PRK11173 two-component respons 97.3 0.001 2.2E-08 61.4 8.4 53 73-127 4-56 (237)
25 PRK11083 DNA-binding response 97.3 0.0011 2.4E-08 59.6 8.3 54 72-127 3-56 (228)
26 COG4565 CitB Response regulato 97.3 0.00063 1.4E-08 65.2 6.9 53 73-127 1-55 (224)
27 COG2197 CitB Response regulato 97.3 0.0008 1.7E-08 63.5 7.6 53 73-127 1-55 (211)
28 PRK13435 response regulator; P 97.3 0.0011 2.3E-08 56.8 7.6 56 70-127 3-59 (145)
29 PRK10643 DNA-binding transcrip 97.3 0.0011 2.3E-08 59.4 8.0 53 73-127 1-53 (222)
30 PRK09468 ompR osmolarity respo 97.3 0.0012 2.6E-08 60.7 8.4 54 72-127 5-58 (239)
31 PRK09836 DNA-binding transcrip 97.3 0.0011 2.4E-08 60.2 8.0 52 74-127 2-53 (227)
32 TIGR03787 marine_sort_RR prote 97.3 0.0011 2.3E-08 60.2 7.9 52 74-127 2-53 (227)
33 PLN03029 type-a response regul 97.2 0.0011 2.5E-08 62.5 8.1 57 71-127 7-81 (222)
34 COG3437 Response regulator con 97.2 0.00056 1.2E-08 69.7 6.3 55 71-127 13-67 (360)
35 PRK10336 DNA-binding transcrip 97.2 0.0012 2.7E-08 59.0 7.7 53 73-127 1-53 (219)
36 PRK11517 transcriptional regul 97.2 0.0014 3.1E-08 59.0 8.1 52 74-127 2-53 (223)
37 PRK10046 dpiA two-component re 97.2 0.0013 2.9E-08 61.2 8.1 54 72-127 4-59 (225)
38 PRK10955 DNA-binding transcrip 97.2 0.0013 2.9E-08 59.5 7.9 52 73-127 2-53 (232)
39 PRK15115 response regulator Gl 97.2 0.0014 3.1E-08 67.2 8.7 56 70-127 3-58 (444)
40 CHL00148 orf27 Ycf27; Reviewed 97.1 0.002 4.4E-08 58.7 8.5 54 72-127 6-59 (240)
41 PRK09483 response regulator; P 97.1 0.0016 3.4E-08 58.6 7.5 54 72-127 1-56 (217)
42 PRK10365 transcriptional regul 97.1 0.0021 4.6E-08 65.6 8.6 55 71-127 4-58 (441)
43 PRK09958 DNA-binding transcrip 97.0 0.0021 4.5E-08 57.2 7.5 53 73-127 1-54 (204)
44 COG4567 Response regulator con 97.0 0.0022 4.7E-08 59.0 7.3 54 74-129 11-65 (182)
45 PRK15411 rcsA colanic acid cap 96.9 0.0025 5.5E-08 59.7 7.2 51 74-126 2-55 (207)
46 PRK15029 arginine decarboxylas 96.9 0.0022 4.7E-08 71.4 7.6 52 74-127 2-62 (755)
47 PRK09390 fixJ response regulat 96.9 0.0042 9.1E-08 54.0 8.0 54 72-127 3-56 (202)
48 PRK10923 glnG nitrogen regulat 96.9 0.0033 7.2E-08 65.0 8.5 53 73-127 4-56 (469)
49 PRK11697 putative two-componen 96.9 0.0034 7.4E-08 58.0 7.4 54 72-127 1-56 (238)
50 PRK10710 DNA-binding transcrip 96.8 0.0051 1.1E-07 56.0 8.4 53 73-127 11-63 (240)
51 PRK00742 chemotaxis-specific m 96.8 0.0037 8.1E-08 62.6 8.0 54 72-127 3-58 (354)
52 PRK12555 chemotaxis-specific m 96.8 0.0038 8.3E-08 62.2 8.0 53 73-127 1-55 (337)
53 PRK10360 DNA-binding transcrip 96.8 0.0044 9.5E-08 54.8 7.4 53 73-127 2-56 (196)
54 PRK10840 transcriptional regul 96.8 0.0041 8.9E-08 57.2 7.5 53 73-127 4-58 (216)
55 TIGR01387 cztR_silR_copR heavy 96.7 0.0052 1.1E-07 54.8 7.3 51 75-127 1-51 (218)
56 PRK10610 chemotaxis regulatory 96.7 0.01 2.2E-07 46.7 8.0 54 72-127 5-59 (129)
57 COG2201 CheB Chemotaxis respon 96.7 0.0043 9.2E-08 63.5 7.1 54 72-127 1-56 (350)
58 PRK15479 transcriptional regul 96.6 0.0079 1.7E-07 53.8 7.9 52 74-127 2-53 (221)
59 PRK10430 DNA-binding transcrip 96.6 0.0072 1.6E-07 56.8 7.9 55 73-127 2-58 (239)
60 PRK11361 acetoacetate metaboli 96.6 0.0073 1.6E-07 62.0 8.4 53 73-127 5-57 (457)
61 COG4566 TtrR Response regulato 96.6 0.0055 1.2E-07 58.0 6.8 54 72-127 4-57 (202)
62 COG3947 Response regulator con 96.6 0.0029 6.3E-08 63.5 5.1 53 73-127 1-53 (361)
63 COG3706 PleD Response regulato 96.6 0.0055 1.2E-07 64.3 7.3 55 71-127 131-185 (435)
64 PRK14084 two-component respons 96.6 0.0082 1.8E-07 56.0 7.7 53 73-127 1-55 (246)
65 PRK13558 bacterio-opsin activa 96.5 0.0051 1.1E-07 66.2 6.8 53 73-127 8-60 (665)
66 PRK09581 pleD response regulat 96.5 0.0088 1.9E-07 59.8 8.0 53 73-127 3-55 (457)
67 TIGR02875 spore_0_A sporulatio 96.5 0.0094 2E-07 56.4 7.7 54 72-127 2-57 (262)
68 KOG0519 Sensory transduction h 96.5 0.0037 8.1E-08 69.9 5.6 56 71-127 665-720 (786)
69 PRK09935 transcriptional regul 96.4 0.013 2.9E-07 51.9 7.9 53 73-127 4-58 (210)
70 TIGR01818 ntrC nitrogen regula 96.4 0.0079 1.7E-07 62.0 7.2 51 75-127 1-51 (463)
71 PRK09191 two-component respons 96.3 0.015 3.2E-07 54.5 7.6 54 72-127 137-191 (261)
72 TIGR02915 PEP_resp_reg putativ 96.0 0.016 3.4E-07 59.6 6.9 49 75-127 1-49 (445)
73 PRK15369 two component system 95.9 0.031 6.7E-07 48.7 7.6 54 72-127 3-58 (211)
74 PRK10403 transcriptional regul 95.9 0.031 6.8E-07 49.3 7.4 54 72-127 6-61 (215)
75 cd00156 REC Signal receiver do 95.8 0.038 8.3E-07 40.9 6.5 50 76-127 1-50 (113)
76 PRK10651 transcriptional regul 95.7 0.047 1E-06 48.3 7.7 54 72-127 6-61 (216)
77 PRK09581 pleD response regulat 95.6 0.024 5.1E-07 56.8 6.2 54 71-127 154-207 (457)
78 COG3707 AmiR Response regulato 95.3 0.022 4.7E-07 53.9 4.3 55 71-127 4-59 (194)
79 PRK10100 DNA-binding transcrip 94.7 0.057 1.2E-06 51.3 5.4 52 71-127 9-61 (216)
80 COG3279 LytT Response regulato 87.0 1.3 2.7E-05 43.0 5.7 55 72-128 1-58 (244)
81 PRK11107 hybrid sensory histid 85.8 1.8 3.8E-05 48.1 6.8 103 12-127 479-585 (919)
82 COG0512 PabA Anthranilate/para 85.6 1.3 2.9E-05 42.0 4.9 60 73-134 2-62 (191)
83 PF06490 FleQ: Flagellar regul 83.2 2.3 5E-05 36.3 4.9 50 74-126 1-50 (109)
84 PRK07649 para-aminobenzoate/an 80.0 2.4 5.3E-05 39.6 4.3 51 75-127 2-52 (195)
85 PRK11475 DNA-binding transcrip 78.5 3.7 8E-05 38.8 5.1 41 85-127 3-46 (207)
86 PRK06774 para-aminobenzoate sy 75.3 4 8.7E-05 37.6 4.2 51 75-127 2-52 (191)
87 PF03602 Cons_hypoth95: Conser 72.7 7.8 0.00017 36.0 5.5 59 69-127 62-123 (183)
88 PRK08007 para-aminobenzoate sy 71.5 5.6 0.00012 36.8 4.2 51 75-127 2-52 (187)
89 PRK05637 anthranilate synthase 70.6 8.7 0.00019 36.4 5.4 51 73-126 2-52 (208)
90 TIGR00566 trpG_papA glutamine 70.2 6.7 0.00015 36.3 4.5 48 75-124 2-49 (188)
91 PRK06895 putative anthranilate 64.4 10 0.00023 34.9 4.5 48 73-124 2-49 (190)
92 PRK05670 anthranilate synthase 64.3 9.9 0.00021 34.9 4.3 48 75-124 2-49 (189)
93 PF10087 DUF2325: Uncharacteri 63.3 22 0.00047 29.3 5.8 29 74-102 1-29 (97)
94 PLN02335 anthranilate synthase 63.0 10 0.00022 36.3 4.3 53 73-127 19-71 (222)
95 PRK02261 methylaspartate mutas 62.7 28 0.0006 31.0 6.7 54 72-127 3-63 (137)
96 CHL00101 trpG anthranilate syn 61.0 13 0.00027 34.5 4.4 48 75-124 2-49 (190)
97 PF01596 Methyltransf_3: O-met 58.8 38 0.00083 32.1 7.3 55 73-127 71-130 (205)
98 PRK01372 ddl D-alanine--D-alan 58.7 23 0.00049 34.5 6.0 56 70-127 2-65 (304)
99 COG0742 N6-adenine-specific me 58.4 25 0.00054 33.4 5.9 59 68-127 62-123 (187)
100 cd02071 MM_CoA_mut_B12_BD meth 58.0 32 0.0007 29.5 6.2 47 79-127 10-59 (122)
101 COG4122 Predicted O-methyltran 55.1 35 0.00075 33.1 6.4 53 73-127 85-141 (219)
102 cd02067 B12-binding B12 bindin 54.2 43 0.00094 28.1 6.3 47 79-127 10-59 (119)
103 PRK09522 bifunctional glutamin 52.6 22 0.00048 38.6 5.2 53 73-127 2-57 (531)
104 PF03709 OKR_DC_1_N: Orn/Lys/A 52.2 42 0.00091 28.7 5.9 41 86-127 7-47 (115)
105 PRK08857 para-aminobenzoate sy 51.1 21 0.00046 32.9 4.2 48 75-125 2-50 (193)
106 PRK13566 anthranilate synthase 50.5 26 0.00057 39.5 5.5 54 69-125 523-576 (720)
107 PF04321 RmlD_sub_bind: RmlD s 49.7 28 0.0006 34.1 4.9 52 73-126 1-59 (286)
108 PRK07765 para-aminobenzoate sy 45.8 35 0.00076 32.3 4.8 52 73-124 1-52 (214)
109 PRK15399 lysine decarboxylase 45.7 54 0.0012 37.1 6.9 53 74-127 2-60 (713)
110 PRK13143 hisH imidazole glycer 44.0 63 0.0014 30.0 6.2 44 73-124 1-44 (200)
111 PRK15400 lysine decarboxylase 43.4 58 0.0012 36.9 6.7 53 74-127 2-60 (714)
112 PRK03958 tRNA 2'-O-methylase; 40.4 1.1E+02 0.0023 28.9 7.0 55 73-127 32-88 (176)
113 PF02310 B12-binding: B12 bind 39.9 73 0.0016 26.3 5.4 43 82-126 14-59 (121)
114 TIGR01815 TrpE-clade3 anthrani 39.4 65 0.0014 36.5 6.3 52 71-125 515-566 (717)
115 PRK14607 bifunctional glutamin 39.2 39 0.00085 36.6 4.5 52 74-127 1-53 (534)
116 COG2185 Sbm Methylmalonyl-CoA 38.8 90 0.0019 28.5 6.0 55 71-127 11-72 (143)
117 cd01743 GATase1_Anthranilate_S 38.2 35 0.00077 31.0 3.4 48 75-124 1-48 (184)
118 PRK00811 spermidine synthase; 38.0 81 0.0018 31.1 6.2 52 73-127 101-159 (283)
119 TIGR00095 RNA methyltransferas 37.6 1.1E+02 0.0025 28.2 6.8 55 73-127 73-130 (189)
120 cd05212 NAD_bind_m-THF_DH_Cycl 37.3 1.1E+02 0.0023 27.5 6.2 55 69-127 25-80 (140)
121 PRK13170 hisH imidazole glycer 35.1 99 0.0021 28.7 6.0 44 73-124 1-44 (196)
122 COG0421 SpeE Spermidine syntha 34.3 77 0.0017 31.8 5.4 53 72-127 100-158 (282)
123 PLN02589 caffeoyl-CoA O-methyl 34.0 1.5E+02 0.0032 29.1 7.2 55 73-127 105-165 (247)
124 PLN02781 Probable caffeoyl-CoA 33.5 1.8E+02 0.0039 27.9 7.6 55 73-127 94-153 (234)
125 PLN02889 oxo-acid-lyase/anthra 33.5 1.1E+02 0.0023 35.8 6.9 55 73-127 82-140 (918)
126 PF13659 Methyltransf_26: Meth 33.4 85 0.0018 25.5 4.7 53 73-127 24-79 (117)
127 PF07688 KaiA: KaiA domain; I 31.8 88 0.0019 31.5 5.1 54 74-127 2-55 (283)
128 cd02070 corrinoid_protein_B12- 31.8 1.4E+02 0.0031 27.7 6.5 53 73-127 83-142 (201)
129 PLN02823 spermine synthase 31.4 92 0.002 31.9 5.5 52 73-127 128-185 (336)
130 PRK13146 hisH imidazole glycer 30.9 1.3E+02 0.0028 28.4 6.0 44 73-124 2-47 (209)
131 cd08179 NADPH_BDH NADPH-depend 30.6 1.6E+02 0.0034 30.2 7.1 49 73-123 24-86 (375)
132 smart00852 MoCF_biosynth Proba 30.3 1.8E+02 0.0038 25.1 6.4 43 82-124 17-63 (135)
133 cd00758 MoCF_BD MoCF_BD: molyb 30.0 1.9E+02 0.004 25.1 6.5 43 83-125 19-65 (133)
134 cd01748 GATase1_IGP_Synthase T 29.4 1E+02 0.0023 28.3 5.1 42 75-124 1-42 (198)
135 TIGR00640 acid_CoA_mut_C methy 29.1 1.1E+02 0.0025 26.9 5.1 47 79-127 13-62 (132)
136 PF01564 Spermine_synth: Sperm 28.7 60 0.0013 31.5 3.5 52 73-127 101-159 (246)
137 TIGR03061 pip_yhgE_Nterm YhgE/ 28.6 2.3E+02 0.005 25.2 7.1 54 71-127 42-105 (164)
138 PLN02476 O-methyltransferase 27.8 2.1E+02 0.0044 28.8 7.1 54 74-127 145-203 (278)
139 PRK04457 spermidine synthase; 27.5 1.6E+02 0.0034 28.8 6.2 52 73-127 91-145 (262)
140 cd02065 B12-binding_like B12 b 27.5 2.3E+02 0.005 23.3 6.5 47 79-127 10-59 (125)
141 COG1091 RfbD dTDP-4-dehydrorha 27.3 1.4E+02 0.0029 30.2 5.7 51 74-127 2-59 (281)
142 PF06283 ThuA: Trehalose utili 26.8 74 0.0016 29.7 3.6 50 74-127 1-61 (217)
143 PRK03604 moaC bifunctional mol 26.8 2.2E+02 0.0047 29.1 7.2 62 64-125 149-222 (312)
144 cd02069 methionine_synthase_B1 26.7 2.4E+02 0.0052 26.9 7.1 53 73-127 89-148 (213)
145 TIGR00888 guaA_Nterm GMP synth 26.6 1E+02 0.0022 28.1 4.5 28 75-102 1-28 (188)
146 TIGR03499 FlhF flagellar biosy 26.4 2E+02 0.0043 28.4 6.7 54 73-127 225-281 (282)
147 cd08185 Fe-ADH1 Iron-containin 26.3 1.4E+02 0.0031 30.5 5.9 49 73-123 26-88 (380)
148 PF01976 DUF116: Protein of un 26.2 1.1E+02 0.0024 28.1 4.5 37 85-123 75-111 (158)
149 PF03808 Glyco_tran_WecB: Glyc 25.7 2.2E+02 0.0048 25.9 6.5 55 71-127 47-110 (172)
150 CHL00197 carA carbamoyl-phosph 25.5 1.4E+02 0.003 31.4 5.6 49 72-125 192-240 (382)
151 PF00117 GATase: Glutamine ami 25.2 1.6E+02 0.0034 26.6 5.4 48 76-125 1-49 (192)
152 TIGR03590 PseG pseudaminic aci 24.9 1.9E+02 0.0042 28.2 6.3 49 74-127 33-89 (279)
153 smart00450 RHOD Rhodanese Homo 24.7 1.5E+02 0.0032 22.6 4.5 40 72-111 56-96 (100)
154 PRK10909 rsmD 16S rRNA m(2)G96 24.5 1.9E+02 0.0042 27.2 6.0 52 73-127 77-130 (199)
155 PF10672 Methyltrans_SAM: S-ad 24.5 2.8E+02 0.006 27.9 7.4 54 73-127 147-204 (286)
156 PF00497 SBP_bac_3: Bacterial 24.2 2.9E+02 0.0063 24.1 6.9 51 73-127 111-161 (225)
157 PRK13181 hisH imidazole glycer 24.2 1.7E+02 0.0037 27.0 5.5 42 75-124 2-43 (199)
158 COG0118 HisH Glutamine amidotr 24.2 1.4E+02 0.0029 28.9 4.9 36 72-107 1-36 (204)
159 PRK15128 23S rRNA m(5)C1962 me 23.8 2.9E+02 0.0062 28.9 7.6 55 73-127 244-302 (396)
160 PLN02366 spermidine synthase 23.7 2.1E+02 0.0046 28.9 6.5 53 73-127 116-174 (308)
161 cd08187 BDH Butanol dehydrogen 23.7 2E+02 0.0044 29.4 6.4 49 73-123 29-91 (382)
162 cd01524 RHOD_Pyr_redox Member 23.7 1.1E+02 0.0024 24.1 3.7 38 73-110 52-89 (90)
163 cd01080 NAD_bind_m-THF_DH_Cycl 23.3 2.7E+02 0.0059 25.6 6.6 54 70-127 42-96 (168)
164 PRK05993 short chain dehydroge 23.0 2.5E+02 0.0054 26.7 6.6 53 73-127 5-57 (277)
165 PF14097 SpoVAE: Stage V sporu 23.0 3.1E+02 0.0067 26.0 6.8 53 75-127 3-62 (180)
166 PF09456 RcsC: RcsC Alpha-Beta 22.9 1.6E+02 0.0034 25.0 4.4 43 76-127 3-45 (92)
167 cd00886 MogA_MoaB MogA_MoaB fa 22.8 2.3E+02 0.005 25.2 5.9 43 83-125 20-68 (152)
168 cd01742 GATase1_GMP_Synthase T 22.6 1.2E+02 0.0025 27.3 4.0 47 75-124 1-47 (181)
169 KOG1562 Spermidine synthase [A 22.5 1.7E+02 0.0036 30.2 5.3 52 74-127 147-204 (337)
170 cd08186 Fe-ADH8 Iron-containin 22.2 1.8E+02 0.004 29.8 5.8 49 73-123 27-89 (383)
171 cd00158 RHOD Rhodanese Homolog 22.2 1.3E+02 0.0028 22.7 3.7 38 72-109 50-88 (89)
172 PRK10742 putative methyltransf 22.0 2.5E+02 0.0054 27.9 6.4 53 72-127 110-173 (250)
173 COG1568 Predicted methyltransf 21.4 93 0.002 31.9 3.3 56 70-127 173-230 (354)
174 TIGR00417 speE spermidine synt 21.4 2.4E+02 0.0052 27.4 6.2 52 73-127 97-154 (270)
175 TIGR01855 IMP_synth_hisH imida 21.2 1.8E+02 0.0039 26.9 5.0 42 75-124 1-42 (196)
176 cd01534 4RHOD_Repeat_3 Member 20.9 2.2E+02 0.0048 22.6 4.9 39 72-110 56-94 (95)
177 cd08181 PPD-like 1,3-propanedi 20.9 3E+02 0.0066 27.9 7.0 49 73-123 26-88 (357)
178 PRK08017 oxidoreductase; Provi 20.5 3.3E+02 0.0071 25.0 6.6 52 74-127 4-55 (256)
179 PRK05693 short chain dehydroge 20.4 3.3E+02 0.0071 25.6 6.8 27 74-100 3-29 (274)
No 1
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.40 E-value=4.5e-07 Score=98.88 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=81.8
Q ss_pred eeccccCCCCchhhhhhccc--ccc--CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHH
Q 039733 12 VAGEGHGLGSSEEDESRVDD--AVN--SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHV 87 (399)
Q Consensus 12 ~~~~~~~l~~S~e~~~r~~~--~~~--~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~rei 87 (399)
.-|+|.||.+++....+++| ... .+.|..|.+..+.......+ ...+.. ...+....+||||||++.++..
T Consensus 466 ~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~--~~~~~~---~~~~~~~~~ILivdD~~~~~~~ 540 (779)
T PRK11091 466 ATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEV--EDAFDE---DDMPLPALNILLVEDIELNVIV 540 (779)
T ss_pred CCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccc--cccccc---ccccccccceEEEcCCHHHHHH
Confidence 56899999999999999999 332 34566666665543222111 011111 1123345799999999999999
Q ss_pred HHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 88 VSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 88 L~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 541 l~~~L~~~g~~v~~a~~~~eal~~~~--~~~~Dlvl~D~~ 578 (779)
T PRK11091 541 ARSVLEKLGNSVDVAMTGKEALEMFD--PDEYDLVLLDIQ 578 (779)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHhh--cCCCCEEEEcCC
Confidence 99999999999999999999999998 778999999998
No 2
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.16 E-value=3.5e-06 Score=93.10 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=78.1
Q ss_pred eccccCCCCchhhhhhccc--ccc--CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHHH
Q 039733 13 AGEGHGLGSSEEDESRVDD--AVN--SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHVV 88 (399)
Q Consensus 13 ~~~~~~l~~S~e~~~r~~~--~~~--~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~reiL 88 (399)
-|+|.||.+.++...+++| ... .+.|..|.+..+.....+.++. .+. ...+....+||||||++.++..+
T Consensus 624 ~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~--~~~----~~~~~~~~~vLivdD~~~~~~~l 697 (914)
T PRK11466 624 GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPK--TVN----QAVRLDGLRLLLIEDNPLTQRIT 697 (914)
T ss_pred CCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccccc--ccc----cccccCCcceEEEeCCHHHHHHH
Confidence 4889999999999999999 322 3345666665553322111111 110 11122346899999999999999
Q ss_pred HHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 89 SALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 89 ~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|+..||.|..+.++.+|+..+.. ...||+||+|+.
T Consensus 698 ~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~ 735 (914)
T PRK11466 698 AEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFD 735 (914)
T ss_pred HHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCC
Confidence 99999999999999999999998862 357899999998
No 3
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.12 E-value=4.7e-06 Score=92.44 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=79.7
Q ss_pred eeccccCCCCchhhhhhccc--ccc--CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHH
Q 039733 12 VAGEGHGLGSSEEDESRVDD--AVN--SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHV 87 (399)
Q Consensus 12 ~~~~~~~l~~S~e~~~r~~~--~~~--~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~rei 87 (399)
.-|+|.||.+.++....++| ... ...|..|.+..+.....+..... .. ...+....+||||||++..+..
T Consensus 644 ~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~---~~---~~~~~~~~~iLvvdd~~~~~~~ 717 (968)
T TIGR02956 644 SGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSA---TL---TVIDLPPQRVLLVEDNEVNQMV 717 (968)
T ss_pred CCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccccc---cc---ccccccccceEEEcCcHHHHHH
Confidence 35889999999999999998 322 33455666655533222111000 00 0112234589999999999999
Q ss_pred HHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 88 VSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 88 L~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 718 l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvl~D~~ 755 (968)
T TIGR02956 718 AQGFLTRLGHKVTLAESGQSALECFH--QHAFDLALLDIN 755 (968)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHHH--CCCCCEEEECCC
Confidence 99999999999999999999999998 788999999998
No 4
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=98.07 E-value=8.7e-06 Score=89.71 Aligned_cols=53 Identities=25% Similarity=0.449 Sum_probs=50.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 691 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~--~~~~dlil~D~~ 743 (921)
T PRK15347 691 LQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR--QHRFDLVLMDIR 743 (921)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 58999999999999999999999999999999999999998 788999999998
No 5
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.05 E-value=1.1e-05 Score=77.21 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=50.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++.++..|..+|+..||.|..+.++.+|+..+. .. ||+||+|++
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~-~dlviLD~~ 52 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR--EQ-PDLVLLDLM 52 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cC-CCEEEEECC
Confidence 38999999999999999999999999999999999999999 67 999999999
No 6
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=98.05 E-value=7e-06 Score=93.63 Aligned_cols=110 Identities=16% Similarity=0.261 Sum_probs=78.2
Q ss_pred eccccCCCCchhhhhhccc--ccc--CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHHH
Q 039733 13 AGEGHGLGSSEEDESRVDD--AVN--SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHVV 88 (399)
Q Consensus 13 ~~~~~~l~~S~e~~~r~~~--~~~--~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~reiL 88 (399)
-|+|.||.+++....+++| ... .+.|..|.+..+........ ... .............+||||||++..+..+
T Consensus 898 ~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~-~~~--~~~~~~~~~~~~~~iLivdd~~~~~~~l 974 (1197)
T PRK09959 898 TGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVA-TVE--AKAEQPITLPEKLSILIADDHPTNRLLL 974 (1197)
T ss_pred CCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhc-ccc--cccccccccccCceEEEcCCCHHHHHHH
Confidence 4889999999999999998 333 23355555555432211111 000 0000011112346899999999999999
Q ss_pred HHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 89 SALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 89 ~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|+..||++..+.++.+|+..+. ...||+||+|+.
T Consensus 975 ~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlil~D~~ 1011 (1197)
T PRK09959 975 KRQLNLLGYDVDEATDGVQALHKVS--MQHYDLLITDVN 1011 (1197)
T ss_pred HHHHHHcCCEEEEECCHHHHHHHhh--cCCCCEEEEeCC
Confidence 9999999999999999999999998 788999999988
No 7
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=97.93 E-value=3e-05 Score=62.95 Aligned_cols=51 Identities=25% Similarity=0.524 Sum_probs=48.8
Q ss_pred EEEEeCChhhHHHHHHHHHcCCC-EEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSY-EVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~Gy-eV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
||||||++..+..+..+|+..|| .|..+.++.+|+..+. ...||+||+|+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~--~~~~d~iiid~~ 52 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK--KHPPDLIIIDLE 52 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH--HSTESEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc--ccCceEEEEEee
Confidence 79999999999999999999999 8999999999999999 678999999987
No 8
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=97.92 E-value=4.7e-05 Score=63.29 Aligned_cols=54 Identities=28% Similarity=0.508 Sum_probs=50.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHH-HHHHHHHhcCC-CccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSL-HAWKILEDLTN-HIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~-eAle~L~~~~~-~pDLIIlDl~ 127 (399)
..+||||||++..+..+..+|...||.+..+.++. +|++.+. .. .||+||+|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~--~~~~~dlii~D~~ 60 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR--ELPQPDLILLDIN 60 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH--hCCCCCEEEEeCC
Confidence 46999999999999999999999999999999995 9999999 56 4999999999
No 9
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=97.81 E-value=2.8e-05 Score=81.88 Aligned_cols=54 Identities=28% Similarity=0.425 Sum_probs=49.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHH--cCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLR--NCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe--~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|.+||||||++.+|+.|+.++. .+||+ |..|.||.+||+++. ...|||||+|+.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~--e~~pDiviTDI~ 57 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ--ETQPDIVITDIN 57 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH--hcCCCEEEEecC
Confidence 4689999999999999999986 46898 558999999999999 789999999999
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.73 E-value=8.6e-05 Score=82.46 Aligned_cols=111 Identities=22% Similarity=0.214 Sum_probs=75.3
Q ss_pred eccccCCCCchhhhhhccc--ccc--CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHHH
Q 039733 13 AGEGHGLGSSEEDESRVDD--AVN--SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHVV 88 (399)
Q Consensus 13 ~~~~~~l~~S~e~~~r~~~--~~~--~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~reiL 88 (399)
-|+|.||.+.+....+++| ... .+.|..|.+..+.....+..+.. .............+||||||++..+..+
T Consensus 637 ~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~---~~~~~~~~~~~~~~ILvVddd~~~~~~l 713 (828)
T PRK13837 637 GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQA---FFGPGPLPRGRGETVLLVEPDDATLERY 713 (828)
T ss_pred CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccc---cCCCcccCCCCCCEEEEEcCCHHHHHHH
Confidence 4788899889999888888 222 33456666655533222111110 0011111111345899999999999999
Q ss_pred HHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcC
Q 039733 89 SALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 89 ~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl 126 (399)
...|...||++..+.++.+++..+......||+||+++
T Consensus 714 ~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll~~ 751 (828)
T PRK13837 714 EEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLVDD 751 (828)
T ss_pred HHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEECC
Confidence 99999999999999999999999973123489999943
No 11
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.71 E-value=8.3e-05 Score=84.05 Aligned_cols=54 Identities=28% Similarity=0.545 Sum_probs=51.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~--~~~~DlVl~D~~ 854 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLTDVN 854 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEcCC
Confidence 468999999999999999999999999999999999999998 788999999998
No 12
>PRK13557 histidine kinase; Provisional
Probab=97.68 E-value=0.00013 Score=74.44 Aligned_cols=109 Identities=16% Similarity=0.244 Sum_probs=75.3
Q ss_pred eccccCCCCchhhhhhccc--cccC--CCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHHH
Q 039733 13 AGEGHGLGSSEEDESRVDD--AVNS--NNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHVV 88 (399)
Q Consensus 13 ~~~~~~l~~S~e~~~r~~~--~~~~--~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~reiL 88 (399)
-|+|.||.+.+....+++| .... ..|..|.+..+........ .+...... .......+||||++++..+..+
T Consensus 356 ~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~-~~~~~~~~---~~~~~~~~iliv~~~~~~~~~l 431 (540)
T PRK13557 356 KGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENP-EQEPKARA---IDRGGTETILIVDDRPDVAELA 431 (540)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCC-CCCCCCcc---cccCCCceEEEEcCcHHHHHHH
Confidence 3788888888888888888 3333 3355555554432221111 11111111 1112346899999999999999
Q ss_pred HHHHHcCCCEEEEECCHHHHHHHHHhcCC-CccEEEEcCC
Q 039733 89 SALLRNCSYEVTAVANSLHAWKILEDLTN-HIDIVLTESS 127 (399)
Q Consensus 89 ~~lLe~~GyeV~~A~dg~eAle~L~~~~~-~pDLIIlDl~ 127 (399)
..+|+..||.+..+.++.+++..+. .. .||+||+|+.
T Consensus 432 ~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~~d~vi~d~~ 469 (540)
T PRK13557 432 RMILEDFGYRTLVASNGREALEILD--SHPEVDLLFTDLI 469 (540)
T ss_pred HHHHHhcCCeEEEeCCHHHHHHHHh--cCCCceEEEEecc
Confidence 9999999999999999999999986 44 6999999987
No 13
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.65 E-value=0.00012 Score=77.11 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=51.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+|||||||..+|..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~--~~~~~lvl~Di~ 57 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS--ESPFDLVLLDIR 57 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--cCCCCEEEEecC
Confidence 347999999999999999999999999999999999999999 568999999999
No 14
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.64 E-value=6e-05 Score=85.06 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=70.8
Q ss_pred eccccCCCCchhhhhhccc--ccc--CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHHH
Q 039733 13 AGEGHGLGSSEEDESRVDD--AVN--SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHVV 88 (399)
Q Consensus 13 ~~~~~~l~~S~e~~~r~~~--~~~--~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~reiL 88 (399)
-|+|.||.+++....+++| ... .+.|..|.+..+.......+ +. ..+. .....+||||||++.++..+
T Consensus 634 ~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~--~~----~~~~--~l~g~~vLlvdD~~~~r~~l 705 (894)
T PRK10618 634 KASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEV--EE----EEEK--LLDGVTVLLDITSEEVRKIV 705 (894)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccc--cc----cccc--cCCCCEEEEEeCCHHHHHHH
Confidence 4889999999999999999 323 44566666666543211111 00 0011 12346999999999999999
Q ss_pred HHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 89 SALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 89 ~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|+.+||+|..+.++ +. ...||+||+|+.
T Consensus 706 ~~~L~~~G~~v~~a~~~------~~--~~~~Dlvl~D~~ 736 (894)
T PRK10618 706 TRQLENWGATCITPDER------LI--SQEYDIFLTDNP 736 (894)
T ss_pred HHHHHHCCCEEEEcCcc------cc--CCCCCEEEECCC
Confidence 99999999999988753 23 467999999987
No 15
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.56 E-value=0.00018 Score=79.21 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=51.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~--~~~~dlil~D~~ 720 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAK--QRPFDLILMDIQ 720 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 368999999999999999999999999999999999999998 789999999998
No 16
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.49 E-value=0.00078 Score=43.96 Aligned_cols=51 Identities=27% Similarity=0.507 Sum_probs=46.7
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl 126 (399)
+|+++++++..+..+...|...|+.+..+.+..+++..+. ...++++++|+
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~ 52 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK--EEKPDLILLDI 52 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH--hcCCCEEEEec
Confidence 6999999999999999999999999999999999999887 56799999986
No 17
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=97.40 E-value=0.00056 Score=63.02 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=49.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~--~~~~dlvild~~ 54 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL--REQPDLVLLDIM 54 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh--hCCCCEEEEeCC
Confidence 48999999999999999999999999999999999999998 678999999988
No 18
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=97.40 E-value=0.00064 Score=60.87 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=49.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~d~vi~d~~ 55 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN--ERGPDLILLDWM 55 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH--hcCCCEEEEECC
Confidence 58999999999999999999989999999999999999998 678999999987
No 19
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=97.39 E-value=0.00071 Score=61.14 Aligned_cols=54 Identities=24% Similarity=0.470 Sum_probs=50.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++..+..+...|+..||.|..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 55 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ--NQHVDLILLDIN 55 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 358999999999999999999999999999999999999998 678999999987
No 20
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=97.38 E-value=0.00066 Score=61.83 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=49.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+...|+..||++..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 55 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--EPWPDLILLDWM 55 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--ccCCCEEEEeCC
Confidence 58999999999999999999999999999999999999988 678999999987
No 21
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=97.36 E-value=0.00074 Score=61.18 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=49.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 54 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA--TRKPDLIILDLG 54 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEeCC
Confidence 48999999999999999999999999999999999999887 678999999998
No 22
>PRK13856 two-component response regulator VirG; Provisional
Probab=97.36 E-value=0.0007 Score=62.83 Aligned_cols=53 Identities=28% Similarity=0.513 Sum_probs=49.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~ 54 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA--SETVDVVVVDLN 54 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--hCCCCEEEEeCC
Confidence 38999999999999999999999999999999999999988 678999999987
No 23
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=97.35 E-value=0.00072 Score=61.34 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=49.4
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~--~~~~dlvild~~ 53 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN--EHLPDIAIVDLG 53 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--hCCCCEEEEECC
Confidence 7999999999999999999999999999999999999988 678999999987
No 24
>PRK11173 two-component response regulator; Provisional
Probab=97.30 E-value=0.001 Score=61.37 Aligned_cols=53 Identities=23% Similarity=0.452 Sum_probs=50.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 56 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--ENDINLVIMDIN 56 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--hCCCCEEEEcCC
Confidence 48999999999999999999999999999999999999998 678999999997
No 25
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=97.29 E-value=0.0011 Score=59.59 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=49.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvl~d~~ 56 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR--QQPPDLVILDVG 56 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh--cCCCCEEEEeCC
Confidence 358999999999999999999999999999999999999888 678999999987
No 26
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=97.29 E-value=0.00063 Score=65.20 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=48.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC-CCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC-SYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~-Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++|||||||+.+.++-..+++.. ||. |.+|.++++|..++. ...|||||+|+-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~--~~~pDLILLDiY 55 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE--EFKPDLILLDIY 55 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH--hhCCCEEEEeec
Confidence 47999999999999999999975 898 558999999999999 778899999998
No 27
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=97.28 E-value=0.0008 Score=63.50 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=47.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCC-CEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCS-YEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~G-yeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++.+|..|..+|...+ ++|+ .+.++.++++.+. ...||+||+|+.
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~--~~~pdvvl~Dl~ 55 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR--ELKPDVVLLDLS 55 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh--hcCCCEEEEcCC
Confidence 369999999999999999998765 8854 6778999999988 789999999998
No 28
>PRK13435 response regulator; Provisional
Probab=97.27 E-value=0.0011 Score=56.82 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=49.8
Q ss_pred CCCcEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 70 TRSLKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+++|||+++++..+..+...|+..||.+. .+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~dliivd~~ 59 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR--RRQPDVALVDVH 59 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh--hcCCCEEEEeee
Confidence 4467999999999999999999998899976 7899999999887 568999999986
No 29
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=97.27 E-value=0.0011 Score=59.43 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=49.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~d~illd~~ 53 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE--SGHYSLVVLDLG 53 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hCCCCEEEEECC
Confidence 37999999999999999999999999999999999999988 678999999987
No 30
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=97.27 E-value=0.0012 Score=60.71 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=50.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++.++..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 58 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT--RESFHLMVLDLM 58 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 358999999999999999999999999999999999999988 678999999987
No 31
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=97.25 E-value=0.0011 Score=60.25 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=49.0
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+||||||++.++..+...|+..||.|..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 53 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM--TGDYDLIILDIM 53 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--hCCCCEEEEECC
Confidence 7999999999999999999999999999999999999887 678999999987
No 32
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=97.25 E-value=0.0011 Score=60.23 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=48.9
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+||||||++.++..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 53 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR--QRLPDLAIIDIG 53 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH--hCCCCEEEEECC
Confidence 6999999999999999999999999999999999999988 678999999987
No 33
>PLN03029 type-a response regulator protein; Provisional
Probab=97.23 E-value=0.0011 Score=62.52 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=49.4
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhc------------------CCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDL------------------TNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~------------------~~~pDLIIlDl~ 127 (399)
..++||||||+...+..+..+|+..||.|..+.++.++++.+... ...+||||+|+.
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~ 81 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYC 81 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCC
Confidence 357999999999999999999999999999999999999998621 113679999998
No 34
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=97.23 E-value=0.00056 Score=69.70 Aligned_cols=55 Identities=31% Similarity=0.457 Sum_probs=52.0
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..++||+|||.+..+..+..+|+..||.|..|.+|++|++++. .+.+|+||+|++
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~--~~~~dlvllD~~ 67 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ--EEPPDLVLLDVR 67 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc--ccCCceEEeecc
Confidence 4569999999999999999999999999999999999999998 677999999999
No 35
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=97.21 E-value=0.0012 Score=59.04 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=49.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++.++..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvild~~ 53 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY--SAPYDAVILDLT 53 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEECC
Confidence 37999999999999999999999999999999999999887 678999999987
No 36
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=97.20 E-value=0.0014 Score=58.98 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=49.1
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+||||||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~--~~~~dlvi~d~~ 53 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL--KDDYALIILDIM 53 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEECC
Confidence 7999999999999999999999999999999999999988 678999999987
No 37
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=97.20 E-value=0.0013 Score=61.24 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=48.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++.++..+..+|+.. +|. |..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~--~~~pdlvllD~~ 59 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE--RFKPGLILLDNY 59 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH--hcCCCEEEEeCC
Confidence 468999999999999999999864 785 678999999999998 678999999998
No 38
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=97.20 E-value=0.0013 Score=59.51 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=47.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+++..+. . .||+||+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~-~~d~vl~d~~ 53 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--D-SIDLLLLDVM 53 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--c-CCCEEEEeCC
Confidence 48999999999999999999999999999999999999876 3 6999999987
No 39
>PRK15115 response regulator GlrR; Provisional
Probab=97.17 E-value=0.0014 Score=67.20 Aligned_cols=56 Identities=20% Similarity=0.416 Sum_probs=51.8
Q ss_pred CCCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 70 TRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
....+||||||++.++..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 3 ~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~--~~~~dlvilD~~ 58 (444)
T PRK15115 3 RKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN--REKVDLVISDLR 58 (444)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEcCC
Confidence 34469999999999999999999999999999999999999998 678999999998
No 40
>CHL00148 orf27 Ycf27; Reviewed
Probab=97.14 E-value=0.002 Score=58.65 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=49.9
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~--~~~~d~illd~~ 59 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR--KEQPDLVILDVM 59 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 458999999999999999999999999999999999999888 678999999987
No 41
>PRK09483 response regulator; Provisional
Probab=97.12 E-value=0.0016 Score=58.61 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=48.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|++||||||++..+..+..+|+.. ++.+. .+.++.+++..+. ...||+||+|+.
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~ 56 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR--TNAVDVVLMDMN 56 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 468999999999999999999874 88865 7899999999998 678999999997
No 42
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.06 E-value=0.0021 Score=65.56 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=51.3
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..++||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~DlvilD~~ 58 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--EQVFDLVLCDVR 58 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh--cCCCCEEEEeCC
Confidence 3469999999999999999999999999999999999999998 678999999998
No 43
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=97.05 E-value=0.0021 Score=57.24 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=48.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+...|+..||.+. .+.++.+++..+. ...||+||+|+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~~dlvi~d~~ 54 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE--TLKPDIVIIDVD 54 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH--ccCCCEEEEeCC
Confidence 3799999999999999999998999987 6899999999998 678999999987
No 44
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=97.01 E-value=0.0022 Score=58.95 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=51.7
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC-CC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS-GS 129 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~-Gs 129 (399)
..||||||..+...|...|++.||.|.++.+..+++..++ ...|...++|+- |.
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar--t~~PayAvvDlkL~~ 65 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR--TAPPAYAVVDLKLGD 65 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh--cCCCceEEEEeeecC
Confidence 6999999999999999999999999999999999999999 889999999999 65
No 45
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=96.92 E-value=0.0025 Score=59.71 Aligned_cols=51 Identities=8% Similarity=0.069 Sum_probs=44.3
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCC--E-EEEECCHHHHHHHHHhcCCCccEEEEcC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSY--E-VTAVANSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~Gy--e-V~~A~dg~eAle~L~~~~~~pDLIIlDl 126 (399)
.||||||++.++..+..+|+..++ . +..+.++.+++..+. ...|||||+|+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~--~~~pDlvLlDl 55 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD--SLRPSVVFINE 55 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh--ccCCCEEEEeC
Confidence 599999999999999999987653 3 557899999999888 67899999994
No 46
>PRK15029 arginine decarboxylase; Provisional
Probab=96.90 E-value=0.0022 Score=71.45 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=48.7
Q ss_pred EEEEEeCChh--------hHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 74 KVLLVENDDS--------TRHVVSALLRNCSYEVTAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~--------~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
+|||||||.. ++..|...|+..||+|..+.++.+|+..+. . ..||+||+|++
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~--~~~~~DlVLLD~~ 62 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILS--SNEAIDCLMFSYQ 62 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--hcCCCcEEEEECC
Confidence 7999999996 699999999999999999999999999997 5 58999999998
No 47
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=96.90 E-value=0.0042 Score=54.01 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=49.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||+|++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~d~ii~d~~ 56 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP--GLRFGCVVTDVR 56 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc--cCCCCEEEEeCC
Confidence 358999999999999999999999999999999999999888 678999999987
No 48
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.90 E-value=0.0033 Score=65.04 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=50.4
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+..+|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~--~~~~DlvllD~~ 56 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA--SKTPDVLLSDIR 56 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEECCC
Confidence 48999999999999999999999999999999999999998 778999999988
No 49
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=96.86 E-value=0.0034 Score=58.01 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=47.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCC-CE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCS-YE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~G-ye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|++|||+||++..+..+..+|+..+ +. +..+.++.+++..+. ...||+||+|+.
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~dlv~lDi~ 56 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH--RLKPDVVFLDIQ 56 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 3689999999999999999999887 34 456889999999988 678999999998
No 50
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=96.84 E-value=0.0051 Score=56.00 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=49.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+..+|...||.+..+.++.+++..+. ...||+||+|+.
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvl~d~~ 63 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR--QTPPDLILLDLM 63 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEeCC
Confidence 38999999999999999999999999999999999999998 678999999987
No 51
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=96.83 E-value=0.0037 Score=62.57 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=49.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||+..++..+..+|... +|.+. .+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~--~~~~DlVllD~~ 58 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK--KLNPDVITLDVE 58 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh--hhCCCEEEEeCC
Confidence 469999999999999999999876 88876 8899999999998 678999999997
No 52
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=96.83 E-value=0.0038 Score=62.18 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=47.8
Q ss_pred cEEEEEeCChhhHHHHHHHHH-cCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLR-NCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe-~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+ ..+|++. .+.++.++++.+. ...||+||+|+.
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~--~~~pDlVllD~~ 55 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA--AQPPDVILMDLE 55 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh--ccCCCEEEEcCC
Confidence 379999999999999999994 6688876 7899999999998 678999999998
No 53
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=96.81 E-value=0.0044 Score=54.79 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=46.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC-CCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC-SYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~-Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|... ++. +..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~--~~~~dlvi~d~~ 56 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP--GRGVQVCICDIS 56 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 58999999999999999999754 676 568899999999998 678999999987
No 54
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=96.80 E-value=0.0041 Score=57.18 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=47.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC-E-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY-E-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy-e-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++.++..+..+|+..++ . +..+.++.+++..+. ...||+||+|+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~--~~~~DlvllD~~ 58 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP--KLDAHVLITDLS 58 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH--hCCCCEEEEeCc
Confidence 5899999999999999999987665 4 667899999999988 678999999987
No 55
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=96.71 E-value=0.0052 Score=54.83 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=47.7
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
||||||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvl~d~~ 51 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL--KDDYDLIILDVM 51 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 689999999999999999999999999999999999998 678999999987
No 56
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=96.70 E-value=0.01 Score=46.75 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=48.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||++++++.....+...|+..|+. +..+.++.+++..+. ...+|+||+|..
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~di~l~d~~ 59 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFVISDWN 59 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh--ccCCCEEEEcCC
Confidence 468999999999999999999988985 778899999999887 678999999976
No 57
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.67 E-value=0.0043 Score=63.48 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=49.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCC-CE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCS-YE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~G-ye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||...+|..|..+|...+ ++ |..+.|+.+|++.+. ...||+|+||+.
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~--~~~PDVi~ld~e 56 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK--KLKPDVITLDVE 56 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH--hcCCCEEEEecc
Confidence 3699999999999999999999988 55 678999999999999 789999999999
No 58
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=96.63 E-value=0.0079 Score=53.76 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=48.4
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+|||+++++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~d~vild~~ 53 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ--SEMYALAVLDIN 53 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEeCC
Confidence 7999999999999999999999999999999999998887 678999999987
No 59
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=96.62 E-value=0.0072 Score=56.78 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=46.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHc-CCCEE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRN-CSYEV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~-~GyeV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++.++..+..+|.. .++.+ ..+.++.+++..+......||+||+|+.
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~ 58 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIY 58 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 5899999999999999999986 47764 4788999999988521357999999997
No 60
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.61 E-value=0.0073 Score=62.04 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=50.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+...|...||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlillD~~ 57 (457)
T PRK11361 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA--DIHPDVVLMDIR 57 (457)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 48999999999999999999999999999999999999998 678999999988
No 61
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=96.60 E-value=0.0055 Score=57.97 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=50.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...|.|||||..+|+.+..+|+..||++..+.++.+.+.... ...|.++|+|+.
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--~~~pGclllDvr 57 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--LDRPGCLLLDVR 57 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--CCCCCeEEEecC
Confidence 347999999999999999999999999999999999999876 678999999999
No 62
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=96.59 E-value=0.0029 Score=63.45 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=50.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++|+|||||..+...|..+|.+.|+.+..+....+|+..|. ...|||||+|+.
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le--~~kpDLifldI~ 53 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE--VFKPDLIFLDIV 53 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH--hcCCCEEEEEee
Confidence 47999999999999999999999988999999999999999 789999999999
No 63
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.0055 Score=64.34 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=52.1
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+||||||+...+..+..+|...||.+..+.++.+|+..+. +..||+||+|+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~--e~~~dlil~d~~ 185 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLA--ELPPDLVLLDAN 185 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHh--cCCCcEEEEecC
Confidence 3469999999999999999999999999999999999999999 679999999999
No 64
>PRK14084 two-component response regulator; Provisional
Probab=96.55 E-value=0.0082 Score=55.98 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=47.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCC-C-EEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCS-Y-EVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~G-y-eV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+..+ + .+..+.++.+++..+. ...||+||+|+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~--~~~~dlv~lDi~ 55 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL--INQYDIIFLDIN 55 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH--hcCCCEEEEeCC
Confidence 479999999999999999998765 4 4678999999999998 678999999998
No 65
>PRK13558 bacterio-opsin activator; Provisional
Probab=96.50 E-value=0.0051 Score=66.19 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=49.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++.++..+..+|...||.|..+.++.+++..+. ...|||||+|+.
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~--~~~~Dlvl~d~~ 60 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE--AGEIDCVVADHE 60 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh--ccCCCEEEEecc
Confidence 58999999999999999999989999999999999999998 678999999987
No 66
>PRK09581 pleD response regulator PleD; Reviewed
Probab=96.50 E-value=0.0088 Score=59.85 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=49.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||++++..+..+..+|...||.+..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~ 55 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE--REQPDIILLDVM 55 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh--hcCCCEEEEeCC
Confidence 48999999999999999999988999999999999999998 678999999997
No 67
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=96.48 E-value=0.0094 Score=56.43 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=47.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCEE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYEV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-GyeV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|... ++.+ ..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~--~~~~DlvllD~~ 57 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK--EQQPDVVVLDII 57 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 358999999999999999999864 5664 47899999999998 678999999988
No 68
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=96.46 E-value=0.0037 Score=69.92 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=52.2
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+||||||+...+.+...+|++.|.++..+.+|.+|+..+.. .+.||+||||+-
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~q 720 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQ 720 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcC
Confidence 45699999999999999999999999999999999999999974 578999999998
No 69
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=96.42 E-value=0.013 Score=51.90 Aligned_cols=53 Identities=13% Similarity=0.294 Sum_probs=47.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC-SYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~-GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||+|++..+..+..+|+.. ++.+. .+.++.+++..+. ...||+||+|+.
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvild~~ 58 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR--TRPVDLIIMDID 58 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 58999999999999999999876 57865 6789999999888 678999999987
No 70
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.41 E-value=0.0079 Score=61.98 Aligned_cols=51 Identities=27% Similarity=0.465 Sum_probs=48.2
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
||||||++.++..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~DlVllD~~ 51 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA--RGQPDLLITDVR 51 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEEcCC
Confidence 689999999999999999999999999999999999998 678999999997
No 71
>PRK09191 two-component response regulator; Provisional
Probab=96.26 E-value=0.015 Score=54.51 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=49.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|||++|++..+..+...|+..|+.+. .+.++.+++..+. ...||+||+|+.
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~--~~~~dlvi~d~~ 191 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK--KTRPGLILADIQ 191 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh--ccCCCEEEEecC
Confidence 35899999999999999999998899977 6889999999998 678999999997
No 72
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.99 E-value=0.016 Score=59.57 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=45.7
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
||||||++.++..+...| .||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~--~~~~dlvllD~~ 49 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR--RHEPAVVTLDLG 49 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh--hCCCCEEEEeCC
Confidence 689999999999999888 7899999999999999998 678999999987
No 73
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=95.94 E-value=0.031 Score=48.74 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=46.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCEE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYEV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-GyeV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||++++..+..+..+|... ++.+ ..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvl~d~~ 58 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR--QLEPDIVILDLG 58 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH--hcCCCEEEEeCC
Confidence 468999999999999999999875 5664 47889999998887 678999999987
No 74
>PRK10403 transcriptional regulator NarP; Provisional
Probab=95.87 E-value=0.031 Score=49.28 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=47.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHc-CCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRN-CSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~-~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||++++..+..+...|+. .+|.+. .+.++.+++..+. ...||+||+|+.
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvi~d~~ 61 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN--RLDPDVILLDLN 61 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH--hcCCCEEEEecC
Confidence 35899999999999999999975 578865 6889999999887 678999999987
No 75
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=95.76 E-value=0.038 Score=40.95 Aligned_cols=50 Identities=26% Similarity=0.439 Sum_probs=45.5
Q ss_pred EEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 76 LLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 76 LLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|++++++..+..+...|...|+.+..+.+..+++..+. ...+|+||+|+.
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~ii~~~~ 50 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA--EEKPDLILLDIM 50 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH--hCCCCEEEEecC
Confidence 57899999999999999988999999999999999888 678999999987
No 76
>PRK10651 transcriptional regulator NarL; Provisional
Probab=95.66 E-value=0.047 Score=48.32 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=46.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCEE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYEV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-GyeV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||++++..+..+..+|... ++.+ ..+.++.+++..+. ...||+||+|+.
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvl~d~~ 61 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE--SLDPDLILLDLN 61 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH--hCCCCEEEEeCC
Confidence 358999999999999999999864 5664 46889999999998 678999999987
No 77
>PRK09581 pleD response regulator PleD; Reviewed
Probab=95.60 E-value=0.024 Score=56.77 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=48.0
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+||||||++..+..+..+|.. .+.+..+.++.+|+..+. ...||+||+|+.
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~--~~~~d~vi~d~~ 207 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA--ETNYDLVIVSAN 207 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc--cCCCCEEEecCC
Confidence 346899999999999999999964 577778999999999988 788999999997
No 78
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=95.27 E-value=0.022 Score=53.92 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=49.8
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.++||+++|.+..+..+...|...||. |..+.++..+.+.+. ...||+||+|+.
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~--~~~pDvVildie 59 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE--RLQPDVVILDIE 59 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH--hcCCCEEEEecC
Confidence 4579999999999999999999999998 557889999999998 789999999998
No 79
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=94.65 E-value=0.057 Score=51.28 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+.+|+||+|++..+..|..+|+ .++. +..+.++.+++..+. .||+||+|+.
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~ 61 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMM 61 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECC
Confidence 34579999999999999999998 4565 556789999888754 4999999999
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=86.98 E-value=1.3 Score=42.97 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=46.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC-C
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYE-VTAVANSLHAWKILEDLTNHIDIVLTESS-G 128 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~-G 128 (399)
+++|+++||++..++.+..++... .++ +..+.++.++++.+. ...+|++++|+. +
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fldI~~~ 58 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ--GLRPDLVFLDIAMP 58 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh--ccCCCeEEEeeccC
Confidence 468999999999999999999842 333 337889999999999 679999999999 6
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=85.81 E-value=1.8 Score=48.13 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=71.5
Q ss_pred eeccccCCCCchhhhhhccc--ccc--CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHH
Q 039733 12 VAGEGHGLGSSEEDESRVDD--AVN--SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHV 87 (399)
Q Consensus 12 ~~~~~~~l~~S~e~~~r~~~--~~~--~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~rei 87 (399)
.-|+|.||.+.++....++| ... .+.|..|.+..+........ ....+. ......+|||+|+++..+..
T Consensus 479 ~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~-~~~~~~------~~~~g~~ili~d~~~~~~~~ 551 (919)
T PRK11107 479 HGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPI-IDGLPT------DCLAGKRLLYVEPNSAAAQA 551 (919)
T ss_pred CCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccc-cccCCc------cccCCCeEEEEeCCHHHHHH
Confidence 34889999999999988988 323 33455555555432211110 000010 11124599999999999999
Q ss_pred HHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 88 VSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 88 L~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+..+|..+||.+..+.+..+ +. ...||++|+|+.
T Consensus 552 l~~~L~~~g~~v~~~~~~~~----l~--~~~~d~il~~~~ 585 (919)
T PRK11107 552 TLDILSETPLEVTYSPTLSQ----LP--EAHYDILLLGLP 585 (919)
T ss_pred HHHHHHHCCCEEEEcCCHHH----hc--cCCCCEEEeccc
Confidence 99999999999999988877 44 568999999987
No 82
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=85.63 E-value=1.3 Score=41.98 Aligned_cols=60 Identities=27% Similarity=0.372 Sum_probs=47.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC-CCCCCCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS-GSGSGSG 134 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~-Gsssgs~ 134 (399)
++|||||+.+.+-.-|..+|+..|++|.++.+....+..++ ...||+||+--. |.-...|
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~--~~~pd~iviSPGPG~P~d~G 62 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE--ALKPDAIVISPGPGTPKDAG 62 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh--hcCCCEEEEcCCCCChHHcc
Confidence 58999999999999999999999998887777644444555 567999999777 6444443
No 83
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=83.17 E-value=2.3 Score=36.26 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=36.0
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl 126 (399)
||||||||...++.|..+|+=.|+++..+....- ..... ....+.+++-+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~--~~~~~~~~v~~ 50 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADW--SSPWEACAVIL 50 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhh--hcCCcEEEEEe
Confidence 6999999999999999999988999887765332 23333 34455554433
No 84
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=80.03 E-value=2.4 Score=39.64 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=39.9
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|||||....+-..|...|++.|+++.++......++.+. ...||.||+--.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iIlsgG 52 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE--NMKPDFLMISPG 52 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh--hCCCCEEEECCC
Confidence 899999999999999999999999887765543444455 457898887443
No 85
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=78.55 E-value=3.7 Score=38.77 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHHHc---CCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 85 RHVVSALLRN---CSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 85 reiL~~lLe~---~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|..+..+|.. .||.+..+.++.++++.+. ...||+||+|+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~--~~~pd~vl~dl~ 46 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS--RISFSAVIFSLS 46 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc--cCCCCEEEeecc
Confidence 6778888865 3566778999999999988 678999997765
No 86
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=75.30 E-value=4 Score=37.62 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=39.2
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|||||....+-.-|..+|+..|++|..+.+..--++.+. ...||.||+--.
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~iilsgG 52 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE--QLAPSHLVISPG 52 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH--hcCCCeEEEcCC
Confidence 899999999999999999999999887775432234444 346888887544
No 87
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=72.74 E-value=7.8 Score=36.02 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=41.4
Q ss_pred CCCCcEEEEEeCChhhHHHHHHHHHcCCCE---EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 69 PTRSLKVLLVENDDSTRHVVSALLRNCSYE---VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 69 p~~~~rVLLVEDD~~~reiL~~lLe~~Gye---V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+...+|++||-++.....++.-++..+.. .+...+...++..+......||+|++|-=
T Consensus 62 SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 62 SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP 123 (183)
T ss_dssp HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--S
T ss_pred hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCC
Confidence 444568999999999999999999988753 34557888888776422578999999964
No 88
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=71.53 E-value=5.6 Score=36.83 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=39.2
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|||||....+-.-|..+|+..|+++..+.+....++.+. ...||.||+--.
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iils~G 52 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID--ALKPQKIVISPG 52 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH--hcCCCEEEEcCC
Confidence 899999999999999999999998877665432234444 347898887555
No 89
>PRK05637 anthranilate synthase component II; Provisional
Probab=70.63 E-value=8.7 Score=36.43 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=38.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl 126 (399)
.+|||||....+-.-|..+|+..|+.+.++..... ++.+. ...||.||+--
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~--~~~~~~iIlsg 52 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEIL--AANPDLICLSP 52 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHH--hcCCCEEEEeC
Confidence 48999999999999999999999998777765322 33333 34788888733
No 90
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=70.24 E-value=6.7 Score=36.26 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=36.7
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|||||....+-.-+..+|+..|+.+....+-...++.+. ...||.||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE--ALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH--hcCCCEEEE
Confidence 899999999999999999999999877664322234444 346888777
No 91
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=64.44 E-value=10 Score=34.90 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=34.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
+||||||..+.+-..|..+|+..|+++.++.....-...+. .+|.||+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~----~~d~iIi 49 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE----NFSHILI 49 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc----cCCEEEE
Confidence 48999999999999999999999988776553211122333 4676664
No 92
>PRK05670 anthranilate synthase component II; Provisional
Probab=64.28 E-value=9.9 Score=34.95 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=35.6
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|||||....+-..+..+|++.|+++..+.........+. ...||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIE--ALNPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHH--hCCCCEEEE
Confidence 899999999999999999999998776654321122333 235888887
No 93
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.26 E-value=22 Score=29.33 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=26.0
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEE
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAV 102 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A 102 (399)
+||||...+.....+..++++.|++....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE
Confidence 48999998888899999999999998777
No 94
>PLN02335 anthranilate synthase
Probab=63.01 E-value=10 Score=36.25 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=37.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|||||....+-..|...|+..|+.+.++......++.+. ...||.||+--.
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~--~~~~d~iVisgG 71 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK--RKNPRGVLISPG 71 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH--hcCCCEEEEcCC
Confidence 48999999888999999999999998777654211133333 346888887444
No 95
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.72 E-value=28 Score=30.98 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=42.8
Q ss_pred CcEEEEE----eCChhhHHHHHHHHHcCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLV----ENDDSTRHVVSALLRNCSYEVTAV---ANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLV----EDD~~~reiL~~lLe~~GyeV~~A---~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||+. |.+..=..++..+|+..||+|+.. ...++.++.+. +..+|+|.+-..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~--~~~~d~V~lS~~ 63 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI--ETDADAILVSSL 63 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEcCc
Confidence 3477777 777777788889999999998864 35788888888 689999988665
No 96
>CHL00101 trpG anthranilate synthase component 2
Probab=60.97 E-value=13 Score=34.48 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=36.5
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|||||....+-..|...|+..|+.+..+......+..+. ...||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEE
Confidence 899999999999999999999998887765432223333 346888884
No 97
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=58.83 E-value=38 Score=32.13 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=43.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhcC--CCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDLT--NHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~~--~~pDLIIlDl~ 127 (399)
-+|+-||-++......+.++++.|+. |. ...+..+.+..+.... ..||+||+|..
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 48999999999999999999998873 44 4577888888775311 36999999988
No 98
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=58.72 E-value=23 Score=34.46 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=38.7
Q ss_pred CCCcEEEEEe------CCh--hhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 70 TRSLKVLLVE------NDD--STRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVE------DD~--~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++++|.|+- -+. .....+...|++.||++..+....+.+..+. ...+|+||.-+.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~--~~~~D~v~~~~~ 65 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLK--ELGFDRVFNALH 65 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhc--cCCCCEEEEecC
Confidence 4556777766 111 1345677888899999888766666777776 568999997543
No 99
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=58.37 E-value=25 Score=33.37 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=42.6
Q ss_pred CCCCCcEEEEEeCChhhHHHHHHHHHcCCC--EE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 68 LPTRSLKVLLVENDDSTRHVVSALLRNCSY--EV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 68 lp~~~~rVLLVEDD~~~reiL~~lLe~~Gy--eV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+...++++||-+......|..-++..++ ++ ....+...++..+.. ...||+|++|-=
T Consensus 62 lSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-~~~FDlVflDPP 123 (187)
T COG0742 62 LSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-REPFDLVFLDPP 123 (187)
T ss_pred HhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-CCcccEEEeCCC
Confidence 344556899999999999999999887763 23 334455566666652 224999999976
No 100
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=58.02 E-value=32 Score=29.45 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=35.8
Q ss_pred eCChhhHHHHHHHHHcCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 79 ENDDSTRHVVSALLRNCSYEVTAV---ANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 79 EDD~~~reiL~~lLe~~GyeV~~A---~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|.+..=..++..+|+..||+|+.. ...++.++.+. ...+|+|.+-..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~--~~~~d~V~iS~~ 59 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI--QEDVDVIGLSSL 59 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEccc
Confidence 555556667788899999998754 35778888888 679999988654
No 101
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=55.15 E-value=35 Score=33.08 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=40.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EEEEC--CHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VTAVA--NSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~~A~--dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
-+|.-+|-++......+..|++.|+. |.... +..+.+.... ...||+||+|..
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~--~~~fDliFIDad 141 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL--DGSFDLVFIDAD 141 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc--CCCccEEEEeCC
Confidence 38999999999999999999999874 44333 4444444422 478999999998
No 102
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=54.21 E-value=43 Score=28.08 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=34.9
Q ss_pred eCChhhHHHHHHHHHcCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 79 ENDDSTRHVVSALLRNCSYEVTAV---ANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 79 EDD~~~reiL~~lLe~~GyeV~~A---~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|.+..=...+..+|+..||+|... ...++.++.+. ...||+|.+-..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~--~~~pdvV~iS~~ 59 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK--EEDADAIGLSGL 59 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEecc
Confidence 445555667888999999998653 35667778887 689999988554
No 103
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=52.61 E-value=22 Score=38.58 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=39.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCH---HHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANS---LHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg---~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|||||....+-..|..+|+..|+.+.++.+. ...++.+. ...|+.||+--.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~--~~~~~~IIlSpG 57 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLA--TMSNPVLMLSPG 57 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHH--hcCcCEEEEcCC
Confidence 489999999999999999999999987776542 12234444 346778887555
No 104
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=52.24 E-value=42 Score=28.66 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 86 HVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 86 eiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..|...|+..||+|+.+.+..+++..+.. ...+.+||+++.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~-~~~i~avvi~~d 47 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIES-FTDIAAVVISWD 47 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHC-TTTEEEEEEECH
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHh-CCCeeEEEEEcc
Confidence 45667777789999999999999999994 467889999863
No 105
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=51.15 E-value=21 Score=32.95 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=34.9
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCH-HHHHHHHHhcCCCccEEEEc
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANS-LHAWKILEDLTNHIDIVLTE 125 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg-~eAle~L~~~~~~pDLIIlD 125 (399)
|||||....+-..+..+|+..|+.+..+... .++ ..+. ...||.||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~--~~~~~~iils 50 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIE--ALNPTHLVIS 50 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHh--hCCCCEEEEe
Confidence 8999999999999999999999987766533 222 2233 3457776654
No 106
>PRK13566 anthranilate synthase; Provisional
Probab=50.50 E-value=26 Score=39.48 Aligned_cols=54 Identities=28% Similarity=0.392 Sum_probs=40.4
Q ss_pred CCCCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEc
Q 039733 69 PTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125 (399)
Q Consensus 69 p~~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlD 125 (399)
+....+|||||....+...|..+|+..|++|..+..... .+.+. ...||+||+=
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~--~~~~DgVVLs 576 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLD--RVNPDLVVLS 576 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhh--hcCCCEEEEC
Confidence 334569999999999999999999999999887665432 23344 3468988763
No 107
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=49.72 E-value=28 Score=34.10 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=39.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEEC-------CHHHHHHHHHhcCCCccEEEEcC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVA-------NSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~-------dg~eAle~L~~~~~~pDLIIlDl 126 (399)
+||||+...-.+...|...|...||++.... +.....+++. ...||+||--.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~--~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLE--AFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHH--HH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHH--HhCCCeEeccc
Confidence 4899999999999999999999999887763 5566666776 45799887654
No 108
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=45.79 E-value=35 Score=32.34 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=34.4
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
++|||++..+.....+...|+..|+++..+................+|.||+
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dglii 52 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLL 52 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEE
Confidence 4799999999988889999999999877655432211111100125787775
No 109
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=45.73 E-value=54 Score=37.11 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=41.2
Q ss_pred EEEEEeCCh-hh-----HHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDD-ST-----RHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~-~~-----reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+||||+++- .. ...|...|++.||+|..+.+..+++..+.. ...+.+||++..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 60 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH-NPRICGVIFDWD 60 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc-ccceeEEEEecc
Confidence 577777663 22 445667788899999999999999998884 567888998876
No 110
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=43.98 E-value=63 Score=30.04 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
++|+|||-.-.....+..+|+..|+++..+.+.. .+ ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~----~~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPE----EI----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHH----HH----ccCCEEEE
Confidence 4899999999999999999999999988886532 22 26888887
No 111
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=43.45 E-value=58 Score=36.90 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=40.6
Q ss_pred EEEEEeCCh-h-----hHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDD-S-----TRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~-~-----~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+||||+++- . -...|...|++.||+|+.+.+..+++..+.. ...+.+||++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 60 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWD 60 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-ccceeEEEEecc
Confidence 567776652 1 1455667788899999999999999998874 567888988876
No 112
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=40.37 E-value=1.1e+02 Score=28.94 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=45.4
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCC--CEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCS--YEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~G--yeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
-+++|+.+++..++.+..+++.|| |.|..+.+..++++-+......+.|+..+..
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~ 88 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGEN 88 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCC
Confidence 489999999999999999999997 6789999999999998732345667666665
No 113
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.91 E-value=73 Score=26.34 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHcCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcC
Q 039733 82 DSTRHVVSALLRNCSYEVTAV---ANSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 82 ~~~reiL~~lLe~~GyeV~~A---~dg~eAle~L~~~~~~pDLIIlDl 126 (399)
+.-...+..+|++.||+|... .+..+..+.+. ...||+|.+-.
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~--~~~pd~V~iS~ 59 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR--AERPDVVGISV 59 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH--HTTCSEEEEEE
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh--cCCCcEEEEEc
Confidence 445677889999999998766 34567777777 56899998866
No 114
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=39.43 E-value=65 Score=36.47 Aligned_cols=52 Identities=27% Similarity=0.396 Sum_probs=38.3
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEc
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlD 125 (399)
...+|||||-...+...|..+|+..|+++.++.... ....+. ...||.||+=
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~--~~~~DgLILs 566 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFD--ERRPDLVVLS 566 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhh--hcCCCEEEEc
Confidence 456999999998889999999999999887665432 122333 3468888873
No 115
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=39.21 E-value=39 Score=36.60 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=37.4
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+|||||....+-..|..+|++.|+. |........-++.+. ...||.||+--.
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~--~~~~d~vIlsgG 53 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIE--ALNPSHIVISPG 53 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHH--hcCCCEEEECCC
Confidence 3999999999999999999999985 666532221234444 356888887554
No 116
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.82 E-value=90 Score=28.52 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=43.0
Q ss_pred CCcEEEE----EeCChhhHHHHHHHHHcCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLL----VENDDSTRHVVSALLRNCSYEVTA---VANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLL----VEDD~~~reiL~~lLe~~GyeV~~---A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|||| .|-+..-..++..+|+..||+|+. +.+..|++..+. +...|+|.+-..
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~--~~dv~vIgvSsl 72 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV--EEDVDVIGVSSL 72 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH--hcCCCEEEEEec
Confidence 3456665 467777788999999999999874 568899998886 578888877655
No 117
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=38.17 E-value=35 Score=30.98 Aligned_cols=48 Identities=29% Similarity=0.297 Sum_probs=33.5
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|||+|.....-..+..+|++.|+++.............. ...+|.||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~~dgvil 48 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELE--LLNPDAIVI 48 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHh--hcCCCEEEE
Confidence 689999999999999999999998766554332222222 235777665
No 118
>PRK00811 spermidine synthase; Provisional
Probab=37.97 E-value=81 Score=31.11 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=37.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC--CC----EE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC--SY----EV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~--Gy----eV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||-|+.+.+..+..|... +. ++ ....++...+.. . ...||+||+|+.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~--~~~yDvIi~D~~ 159 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-T--ENSFDVIIVDST 159 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-C--CCcccEEEECCC
Confidence 48999999999999999888642 11 23 245666654443 2 468999999986
No 119
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=37.65 E-value=1.1e+02 Score=28.24 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=39.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|+.||.++.....+..-++..++. +. ...+..+++..+......+|+|++|-=
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 47999999999999999888877763 33 445565555544311224899999986
No 120
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.29 E-value=1.1e+02 Score=27.53 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=41.7
Q ss_pred CCCCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECC-HHHHHHHHHhcCCCccEEEEcCC
Q 039733 69 PTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVAN-SLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 69 p~~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~d-g~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+....+|+|+........-+..+|.+.|+.|+.+.. ...+.+.++ ..|+|++-..
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----~ADIVvsAtg 80 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----DADVVVVGSP 80 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----hCCEEEEecC
Confidence 445679999999999999999999999999988872 112223344 5688887665
No 121
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.12 E-value=99 Score=28.74 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=35.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
++|+|||--.-+...+...|++.|+++..+.+..+ +. .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE
Confidence 37999998888888889999999999999887643 23 4678876
No 122
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=34.33 E-value=77 Score=31.77 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCC--C---EE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCS--Y---EV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~G--y---eV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.-+|.+||=|+.+.++.+..|-... . ++ +...||.+-++... ..||+||+|..
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~---~~fDvIi~D~t 158 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE---EKFDVIIVDST 158 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC---CcCCEEEEcCC
Confidence 3589999999999999999997643 2 22 34566665555544 47999999998
No 123
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=33.99 E-value=1.5e+02 Score=29.08 Aligned_cols=55 Identities=7% Similarity=0.170 Sum_probs=42.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhc---CCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDL---TNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~---~~~pDLIIlDl~ 127 (399)
-+|+-+|-++.....-+..+++.|+. |. ...+..+.+..+... ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 48999999999999999999988863 43 446677777665421 148999999988
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=33.51 E-value=1.8e+02 Score=27.87 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=42.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhc--CCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDL--TNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~--~~~pDLIIlDl~ 127 (399)
-+|.-+|-++......+..+++.|+. +. ...+..+.+..+... ...||+|++|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 48999999999999999999988863 33 456777777666321 247999999975
No 125
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=33.46 E-value=1.1e+02 Score=35.83 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC-CCEEEEECCHHHHHHHHHh---cCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC-SYEVTAVANSLHAWKILED---LTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~-GyeV~~A~dg~eAle~L~~---~~~~pDLIIlDl~ 127 (399)
++|||||+...+-.-|..+|+.. |..+.++.+-.-.|+.+.. ....||.||+--.
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPG 140 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPG 140 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCC
Confidence 58999999999999999999987 8887665543222332220 0246788886554
No 126
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=33.36 E-value=85 Score=25.49 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++..+|=++...+..+..+...+. ++. ...+..+..+.+. ...+|+||++.-
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~npP 79 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNPP 79 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--S
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECCC
Confidence 5899999999999999998888765 233 4556665554555 578999999987
No 127
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=31.79 E-value=88 Score=31.47 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=43.2
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.|.+.=.++.+.+.+..+|...-|.+..+.++.+.++.++.+.+.+|++|+...
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~ 55 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQS 55 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETT
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecC
Confidence 466667788899999999998889999999999999999865678999999875
No 128
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=31.78 E-value=1.4e+02 Score=27.72 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=40.5
Q ss_pred cEEEEE----eCChhhHHHHHHHHHcCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLV----ENDDSTRHVVSALLRNCSYEVTAV---ANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLV----EDD~~~reiL~~lLe~~GyeV~~A---~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||+. |-+..=..++..+|+..||+|+.. ...++.++.+. ...||+|.+-..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~--~~~~d~v~lS~~ 142 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK--EHKPDILGLSAL 142 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEecc
Confidence 367766 555666778889999999998753 35778888888 789999988664
No 129
>PLN02823 spermine synthase
Probab=31.35 E-value=92 Score=31.90 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=37.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC--CC---EEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC--SY---EVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~--Gy---eV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||-|+.+.++.+..|... ++ ++. ...|+...++.. ...||+||+|+.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---~~~yDvIi~D~~ 185 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---DEKFDVIIGDLA 185 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---CCCccEEEecCC
Confidence 58999999999999999888532 11 232 346666655432 467999999986
No 130
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=30.87 E-value=1.3e+02 Score=28.36 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=35.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
++|.|||----....+...|++.|+ ++..+.+..+ +. .+|.||+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~----l~----~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA----VA----AADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH----hc----CCCEEEE
Confidence 5899999888888999999999999 7777776654 23 6788887
No 131
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=30.65 E-value=1.6e+02 Score=30.16 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=35.5
Q ss_pred cEEEEEeCChhhH-----HHHHHHHHcCCCEEEEECC---------HHHHHHHHHhcCCCccEEE
Q 039733 73 LKVLLVENDDSTR-----HVVSALLRNCSYEVTAVAN---------SLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 73 ~rVLLVEDD~~~r-----eiL~~lLe~~GyeV~~A~d---------g~eAle~L~~~~~~pDLII 123 (399)
.|+|||-+..... +.+...|+..|+.+..+.. ..++++.++ ...+|+||
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~II 86 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMR--EFEPDWII 86 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHH--hcCCCEEE
Confidence 4899998876544 6678888888887766543 556777777 57888776
No 132
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=30.26 E-value=1.8e+02 Score=25.07 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHcCCCEEE---EE-CCHHHHHHHHHhcCCCccEEEE
Q 039733 82 DSTRHVVSALLRNCSYEVT---AV-ANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 82 ~~~reiL~~lLe~~GyeV~---~A-~dg~eAle~L~~~~~~pDLIIl 124 (399)
......|..+|+..|+++. .+ .+..+..+.+......+|+||+
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliit 63 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVIT 63 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEE
Confidence 3456788999999998654 23 3444333333311135788776
No 133
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.05 E-value=1.9e+02 Score=25.06 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHcCCCEEEEE---CCHHHHH-HHHHhcCCCccEEEEc
Q 039733 83 STRHVVSALLRNCSYEVTAV---ANSLHAW-KILEDLTNHIDIVLTE 125 (399)
Q Consensus 83 ~~reiL~~lLe~~GyeV~~A---~dg~eAl-e~L~~~~~~pDLIIlD 125 (399)
.+...|..+|+.+|+++... .+..+++ +.+...-..+|+||+-
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 46678889999999976543 4443333 3332111248888863
No 134
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=29.39 E-value=1e+02 Score=28.30 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=34.2
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|+|||----....+..+|++.|+++..+.+..+ +. .+|+||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l~----~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----IL----SADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----hc----cCCEEEE
Confidence 688888888899999999999999988886432 33 5788888
No 135
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.08 E-value=1.1e+02 Score=26.90 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=36.0
Q ss_pred eCChhhHHHHHHHHHcCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 79 ENDDSTRHVVSALLRNCSYEVTA---VANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 79 EDD~~~reiL~~lLe~~GyeV~~---A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|-+..-..++..+|+..||+|+. ..+.+++++.+. +..+|+|.+-..
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~--e~~adii~iSsl 62 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV--EADVHVVGVSSL 62 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH--HcCCCEEEEcCc
Confidence 45556667788999999999875 346788888888 678999887443
No 136
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=28.67 E-value=60 Score=31.51 Aligned_cols=52 Identities=10% Similarity=0.202 Sum_probs=36.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC--C-----CEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC--S-----YEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~--G-----yeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|-+||=|+.+.++.+.+|... + .++ ...++..-++... ...||+||+|+.
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~~--~~~yDvIi~D~~ 159 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKETQ--EEKYDVIIVDLT 159 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTSS--ST-EEEEEEESS
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhcc--CCcccEEEEeCC
Confidence 48999999999999988887642 1 234 5677766555544 228999999998
No 137
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=28.64 E-value=2.3e+02 Score=25.24 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=36.1
Q ss_pred CCcEEEEEeCChhh---------HHHHHHHHHc-CCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDST---------RHVVSALLRN-CSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~---------reiL~~lLe~-~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..++|.||+.|... -..+...|.. ..+.+.. .+..+|.+.+. ...++.+|.=-.
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~--~g~~~~~ivIP~ 105 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLA--DGKYYMVITIPE 105 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhH--cCcEEEEEEECc
Confidence 35689999988764 3444455554 3455544 48999999999 677777765333
No 138
>PLN02476 O-methyltransferase
Probab=27.82 E-value=2.1e+02 Score=28.75 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=41.3
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhc--CCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDL--TNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~--~~~pDLIIlDl~ 127 (399)
+|+-+|-++......+..+++.|+. |. ...+..+.+..+... ...||+||+|..
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 6889999999999999999999874 43 346666766655310 247999999988
No 139
>PRK04457 spermidine synthase; Provisional
Probab=27.51 E-value=1.6e+02 Score=28.82 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=37.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCC--CEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCS--YEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~G--yeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||-++.+....+..+...+ -++. ...++.+.+... ...||+||+|..
T Consensus 91 ~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~ 145 (262)
T PRK04457 91 TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---RHSTDVILVDGF 145 (262)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---CCCCCEEEEeCC
Confidence 589999999999999888876432 2333 346776665533 357999999975
No 140
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=27.46 E-value=2.3e+02 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=34.1
Q ss_pred eCChhhHHHHHHHHHcCCCEEEEEC---CHHHHHHHHHhcCCCccEEEEcCC
Q 039733 79 ENDDSTRHVVSALLRNCSYEVTAVA---NSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 79 EDD~~~reiL~~lLe~~GyeV~~A~---dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|-++.-...+..+|+..||++.... ...+.++.+. ...||+|.+-..
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~--~~~pdiV~iS~~ 59 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK--EEDADVVGLSAL 59 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH--HcCCCEEEEecc
Confidence 4555666778888999999877543 4566666666 578999988665
No 141
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=27.35 E-value=1.4e+02 Score=30.18 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=39.8
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEE-------CCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAV-------ANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A-------~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+|||+...-.+...|..+|. .+++|+.. .+.....+.+. ...||+||--..
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~--~~~PDvVIn~AA 59 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIR--ETRPDVVINAAA 59 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHH--hhCCCEEEECcc
Confidence 59999999999999999997 55776643 35666777887 678999986554
No 142
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=26.80 E-value=74 Score=29.67 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=32.9
Q ss_pred EEEEEeCC---------hhhHHHHHHHHH-cCCCEEEEECCHHHHHH-HHHhcCCCccEEEEcCC
Q 039733 74 KVLLVEND---------DSTRHVVSALLR-NCSYEVTAVANSLHAWK-ILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD---------~~~reiL~~lLe-~~GyeV~~A~dg~eAle-~L~~~~~~pDLIIlDl~ 127 (399)
||||+.-. +.....|..+|+ ..+|+|....+....-. .| ..+|+||+...
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~ 61 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNT 61 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-S
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECC
Confidence 56776655 257778899998 77999998777433212 23 47999998876
No 143
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=26.79 E-value=2.2e+02 Score=29.06 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=36.5
Q ss_pred ccccCCCCCcEEEEEeCCh-------hhHHHHHHHHHcCCCEEE---EECCHHHHHH-HHHhc-CCCccEEEEc
Q 039733 64 WERFLPTRSLKVLLVENDD-------STRHVVSALLRNCSYEVT---AVANSLHAWK-ILEDL-TNHIDIVLTE 125 (399)
Q Consensus 64 ~e~~lp~~~~rVLLVEDD~-------~~reiL~~lLe~~GyeV~---~A~dg~eAle-~L~~~-~~~pDLIIlD 125 (399)
|+++.|+-..-||++.|.. .....|..+|+.+|+++. .+.+..+.+. .+... ...+|+||+-
T Consensus 149 ~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITT 222 (312)
T PRK03604 149 KRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITT 222 (312)
T ss_pred ccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEEC
Confidence 4444332223478887743 456689999999999755 3445444333 33321 1357888863
No 144
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=26.66 E-value=2.4e+02 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=40.9
Q ss_pred cEEEEE----eCChhhHHHHHHHHHcCCCEEEEEC---CHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLV----ENDDSTRHVVSALLRNCSYEVTAVA---NSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLV----EDD~~~reiL~~lLe~~GyeV~~A~---dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|+|. |.+..=..++..+|+..||+|+... ..++.++.+. +..||+|.+-..
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~--~~~~~~V~lS~~ 148 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK--EHKADIIGLSGL 148 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEccc
Confidence 467776 6666667778888999999988643 5777888888 789999988655
No 145
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=26.63 E-value=1e+02 Score=28.06 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=25.0
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAV 102 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A 102 (399)
|||||....+...|..+|++.|+++...
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~ 28 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELV 28 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEE
Confidence 6899999999999999999999987665
No 146
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=26.43 E-value=2e+02 Score=28.35 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=36.0
Q ss_pred cEEEEEeCChh---hHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDS---TRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~---~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.||+-|+. ..+.+..+-+..|+.+..+.+..+....+.. -..+|+||+|..
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~~~d~vliDt~ 281 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LRDKDLILIDTA 281 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-ccCCCEEEEeCC
Confidence 58999988873 2334444444557777767777766666663 246899999964
No 147
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.33 E-value=1.4e+02 Score=30.47 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=34.5
Q ss_pred cEEEEEeCChh-----hHHHHHHHHHcCCCEEEEEC---------CHHHHHHHHHhcCCCccEEE
Q 039733 73 LKVLLVENDDS-----TRHVVSALLRNCSYEVTAVA---------NSLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 73 ~rVLLVEDD~~-----~reiL~~lLe~~GyeV~~A~---------dg~eAle~L~~~~~~pDLII 123 (399)
.|+|||-|... ....+...|+..|+++..+. +..++++.++ ...+|+||
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~Ii 88 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAR--EEGCDFVV 88 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHH--HcCCCEEE
Confidence 58999998654 33567778888887765542 3556777777 57889877
No 148
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=26.19 E-value=1.1e+02 Score=28.05 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEE
Q 039733 85 RHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 85 reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLII 123 (399)
...+..+.++.||.|.+++.+.-|...+. ...|+.||
T Consensus 75 Ig~l~~lae~~g~~v~i~~Ggt~ar~~ik--~~~p~~ii 111 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATGGTLARKIIK--EYRPKAII 111 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcChHHHHHHHH--HhCCCEEE
Confidence 34566777888999999999999999998 67888655
No 149
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.74 E-value=2.2e+02 Score=25.89 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcC--CCEEEEECC-------HHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNC--SYEVTAVAN-------SLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~--GyeV~~A~d-------g~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+|.++...+...+.+...|+.. |..+..+.+ ..+.++.+. ...||+|++-+.
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~--~~~pdiv~vglG 110 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRIN--ASGPDIVFVGLG 110 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHH--HcCCCEEEEECC
Confidence 3469999999999999988888865 566665443 344555666 678999999776
No 150
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=25.50 E-value=1.4e+02 Score=31.37 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=33.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEc
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTE 125 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlD 125 (399)
..+|+|||-- +..-|...|+..|+++..+.....+ +.+. ...||.||+-
T Consensus 192 ~~~I~viD~g--~k~ni~~~L~~~G~~v~vvp~~~~~-~~i~--~~~~dgIilS 240 (382)
T CHL00197 192 QLKIIVIDFG--VKYNILRRLKSFGCSITVVPATSPY-QDIL--SYQPDGILLS 240 (382)
T ss_pred CCEEEEEECC--cHHHHHHHHHHCCCeEEEEcCCCCH-HHHh--ccCCCEEEEc
Confidence 4689999993 4455777888889998877543332 3333 3468888874
No 151
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=25.22 E-value=1.6e+02 Score=26.57 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=33.5
Q ss_pred EEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHH-HhcCCCccEEEEc
Q 039733 76 LLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKIL-EDLTNHIDIVLTE 125 (399)
Q Consensus 76 LLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L-~~~~~~pDLIIlD 125 (399)
||||....+...|...|+..|+.+..+..-....... . ...+|.||+=
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~d~iii~ 49 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLED--LDDYDGIIIS 49 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHH--TTTSSEEEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhh--hcCCCEEEEC
Confidence 7899999999999999999997766554222222221 2 4578887763
No 152
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.91 E-value=1.9e+02 Score=28.16 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=32.4
Q ss_pred EEEEE-eCChhhHHHHHHHHHcCCCEEEEECC-------HHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLV-ENDDSTRHVVSALLRNCSYEVTAVAN-------SLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLV-EDD~~~reiL~~lLe~~GyeV~~A~d-------g~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.|.++ .++... +...|+..||.|....+ ..+..+.+. ...||+||+|.-
T Consensus 33 ~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~--~~~~d~vV~D~y 89 (279)
T TIGR03590 33 EVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLE--EEKFDILIVDHY 89 (279)
T ss_pred EEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHH--hcCCCEEEEcCC
Confidence 55444 443332 34577888999876643 445677777 568999999965
No 153
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=24.70 E-value=1.5e+02 Score=22.60 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=31.9
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHH
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKI 111 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~ 111 (399)
..+|+|++........+..+|+..||. |.....|..+|..
T Consensus 56 ~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~ 96 (100)
T smart00450 56 DKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSA 96 (100)
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHHHh
Confidence 347888887777777788889999997 8888888888764
No 154
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=24.49 E-value=1.9e+02 Score=27.22 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=37.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE-EE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE-VT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye-V~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|..||-++.....+..-++..|+. +. ...+..+.+.. . ...||+||+|.=
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~-~--~~~fDlV~~DPP 130 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ-P--GTPHNVVFVDPP 130 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh-c--CCCceEEEECCC
Confidence 48999999999999999988887753 33 33444443322 1 346999999976
No 155
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=24.45 E-value=2.8e+02 Score=27.91 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=37.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE----EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE----VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye----V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..|+-||-.....+..+.-++..|+. -..+.+..+.|..+.. ...||+||+|.=
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~-~~~fD~IIlDPP 204 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK-GGRFDLIILDPP 204 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH-TT-EEEEEE--S
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc-CCCCCEEEECCC
Confidence 47999999999999988888866653 2356788888877654 568999999976
No 156
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=24.22 E-value=2.9e+02 Score=24.12 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=38.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.++.... ....+...+.. +.++..+.+..++++++. ...+|++|++..
T Consensus 111 ~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~--~g~~d~~i~~~~ 161 (225)
T PF00497_consen 111 KRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALL--SGRIDAFIVDES 161 (225)
T ss_dssp SEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHH--TTSSSEEEEEHH
T ss_pred cccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHh--cCCeeeeeccch
Confidence 4788777744 44445554433 678888999999999999 789999998866
No 157
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.20 E-value=1.7e+02 Score=27.02 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=32.0
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|+|||-.--....+...|+..|+++..+.+..+ +. .+|+||+
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~----l~----~~d~lil 43 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPEE----IA----GADKVIL 43 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEcChHH----hc----cCCEEEE
Confidence 889996666777888899999999888876543 23 4788874
No 158
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=24.19 E-value=1.4e+02 Score=28.95 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=32.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHH
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLH 107 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~e 107 (399)
+++|.|||-..-+...+...|++.|+++.+..+.++
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~ 36 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEE 36 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHH
Confidence 358999999999999999999999999998888765
No 159
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=23.76 E-value=2.9e+02 Score=28.95 Aligned_cols=55 Identities=7% Similarity=0.191 Sum_probs=40.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE---EE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE---VT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye---V~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|..||-++........-++..|+. +. ...+..+.+..+......||+||+|.=
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP 302 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP 302 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCC
Confidence 48999999999999999988877762 33 446777766555321357999999965
No 160
>PLN02366 spermidine synthase
Probab=23.74 E-value=2.1e+02 Score=28.86 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=36.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC--CC---EEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC--SY---EVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~--Gy---eV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||=|+.+.+..+..|... ++ ++. ...++.+.++... ...||+||+|..
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~ 174 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSS 174 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCC
Confidence 48999999999888888877542 22 333 3456666555442 357999999986
No 161
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=23.70 E-value=2e+02 Score=29.44 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=34.7
Q ss_pred cEEEEEeCChhh-----HHHHHHHHHcCCCEEEEEC---------CHHHHHHHHHhcCCCccEEE
Q 039733 73 LKVLLVENDDST-----RHVVSALLRNCSYEVTAVA---------NSLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 73 ~rVLLVEDD~~~-----reiL~~lLe~~GyeV~~A~---------dg~eAle~L~~~~~~pDLII 123 (399)
.|+|||-+.... ...+...|+..|+++..+. +..++++.++ ...+|+||
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~II 91 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCK--EEKVDFIL 91 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH--HcCCCEEE
Confidence 489999876443 3567788888888766553 3456677777 57889876
No 162
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=23.66 E-value=1.1e+02 Score=24.06 Aligned_cols=38 Identities=5% Similarity=0.185 Sum_probs=27.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHH
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWK 110 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle 110 (399)
.+|+|+.+...........|+..||++.....|..+|.
T Consensus 52 ~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~~w~ 89 (90)
T cd01524 52 KEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKTYS 89 (90)
T ss_pred CcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHHHhc
Confidence 35777776655556667788889998888888877764
No 163
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=23.30 E-value=2.7e+02 Score=25.56 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=39.2
Q ss_pred CCCcEEEEEeCChhhHHHHHHHHHcCCCEEEEEC-CHHHHHHHHHhcCCCccEEEEcCC
Q 039733 70 TRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVA-NSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~-dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
....+||||.--......+..+|...|+.|..+. +..+..+.+. ..|+||.-..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~----~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK----QADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHh----hCCEEEEcCC
Confidence 3456999999988888888888988898866554 4444444554 6799987553
No 164
>PRK05993 short chain dehydrogenase; Provisional
Probab=23.04 E-value=2.5e+02 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=30.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|||..-..-+...+...|...|+.|+.+.-..+.++.+. ...+..+.+|+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~--~~~~~~~~~Dl~ 57 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE--AEGLEAFQLDYA 57 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--HCCceEEEccCC
Confidence 35777777677777777777667777665443333334444 234455556654
No 165
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.02 E-value=3.1e+02 Score=26.04 Aligned_cols=53 Identities=9% Similarity=0.211 Sum_probs=36.9
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEEC-------CHHHHHHHHHhcCCCccEEEEcCC
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVA-------NSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~-------dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|||-|-|...+..+..+-++.|.+++..+ +|.+.++++.+..+.|=+|..|=.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~ 62 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDK 62 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45555566677777777778899988655 789999999844445555555544
No 166
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=22.87 E-value=1.6e+02 Score=25.02 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=28.0
Q ss_pred EEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 76 LLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 76 LLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.|.=.+..+...|..+|...|+.|.... +++ ...-|++|+|..
T Consensus 3 wL~irNa~Le~yL~~lL~~~G~~v~~y~-~q~--------~~~~DvlItD~~ 45 (92)
T PF09456_consen 3 WLAIRNAYLESYLQRLLSYHGFQVQRYE-GQQ--------PDADDVLITDYE 45 (92)
T ss_dssp EEE---HHHHHHHHHHHCTTTEEEEE-S-S------------TT-EEEEESS
T ss_pred EEEehhHHHHHHHHHHHHHCCcEEEEec-CCC--------CCCCcEEEECCC
Confidence 4444566777889999999999999876 322 235699999988
No 167
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.83 E-value=2.3e+02 Score=25.18 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHcCCCEEE---EECCHHHHH-HHHHhcCC--CccEEEEc
Q 039733 83 STRHVVSALLRNCSYEVT---AVANSLHAW-KILEDLTN--HIDIVLTE 125 (399)
Q Consensus 83 ~~reiL~~lLe~~GyeV~---~A~dg~eAl-e~L~~~~~--~pDLIIlD 125 (399)
.+...|..+|+.+||++. .+.+..+.+ +.+..... .+|+||+-
T Consensus 20 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 20 RSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred chHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 356788999999998754 344444333 33332112 68998874
No 168
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=22.60 E-value=1.2e+02 Score=27.26 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=31.5
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|||||-...+...+..+|+..|+.+........ .+... ...+|.||+
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~-~~~~~--~~~~dgvIl 47 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTP-LEEIK--LKNPKGIIL 47 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCC-hhhhc--ccCCCEEEE
Confidence 678998888888899999999988766553321 11112 235777665
No 169
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=22.48 E-value=1.7e+02 Score=30.24 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=41.7
Q ss_pred EEEEEeCChhhHHHHHHHHHc--CCCE---E-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRN--CSYE---V-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~--~Gye---V-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.|+++|-|..+.+.=..+|.. +||+ | +...+|...++.+. ...+|+||+|..
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~--~~~~dVii~dss 204 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK--ENPFDVIITDSS 204 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc--cCCceEEEEecC
Confidence 588999999888888888875 4673 3 34569999999887 689999999977
No 170
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=22.24 E-value=1.8e+02 Score=29.79 Aligned_cols=49 Identities=22% Similarity=0.117 Sum_probs=34.0
Q ss_pred cEEEEEeCChhh-----HHHHHHHHHcCCCEEEEEC---------CHHHHHHHHHhcCCCccEEE
Q 039733 73 LKVLLVENDDST-----RHVVSALLRNCSYEVTAVA---------NSLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 73 ~rVLLVEDD~~~-----reiL~~lLe~~GyeV~~A~---------dg~eAle~L~~~~~~pDLII 123 (399)
.|+|||-|.... .+.+...|+..|+++..+. +..++++.++ ...+|+||
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~--~~~~D~II 89 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR--EFGAQAVI 89 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH--HcCCCEEE
Confidence 489999887654 3567888888888766654 2345666666 56788765
No 171
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=22.21 E-value=1.3e+02 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=28.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHH
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAW 109 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAl 109 (399)
...|+|+.+.......+...|+..||. +.....|-.+|
T Consensus 50 ~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w 88 (89)
T cd00158 50 DKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAW 88 (89)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhc
Confidence 347888888877777888899999885 66666666554
No 172
>PRK10742 putative methyltransferase; Provisional
Probab=22.05 E-value=2.5e+02 Score=27.94 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=38.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC------CC----EEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC------SY----EVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~------Gy----eV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|.+||-++.+..+|..-|++. +. ++. ...+..+.+..+ ...||+|++|-+
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPM 173 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPM 173 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCC
Confidence 347999999999999999999874 21 222 234555555543 347999999999
No 173
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=21.43 E-value=93 Score=31.91 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=38.0
Q ss_pred CCCcEEEEEeCChhhHHHHHHHHHcCCCE-EE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 70 TRSLKVLLVENDDSTRHVVSALLRNCSYE-VT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVEDD~~~reiL~~lLe~~Gye-V~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+..+|+|||=|..+...+..+.+..||. +. .+-+...++..-. ...||++++|.-
T Consensus 173 ~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~--~~kFDvfiTDPp 230 (354)
T COG1568 173 GMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL--KRKFDVFITDPP 230 (354)
T ss_pred CCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH--HhhCCeeecCch
Confidence 34457888888888888888888888876 33 2334444443322 357999999987
No 174
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=21.43 E-value=2.4e+02 Score=27.40 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=35.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCC--C---EEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCS--Y---EVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~G--y---eV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||-++.+.+..+..|...+ + ++. ...++.+.+... ...||+||+|..
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~ 154 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDST 154 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCC
Confidence 479999999999888888775421 1 222 235665555433 358999999976
No 175
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=21.25 E-value=1.8e+02 Score=26.92 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=34.1
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|+|||...-....|..+|+..|+.+..+.+..+ +. .+|+||+
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~----l~----~~d~lii 42 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKE----AE----LADKLIL 42 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHH----hc----cCCEEEE
Confidence 678999999999999999999999888886532 22 5788876
No 176
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=20.93 E-value=2.2e+02 Score=22.59 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=28.9
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHH
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWK 110 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle 110 (399)
..+|+++.+...........|...||.|.....|..+|.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W~ 94 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLAAAL 94 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHHHhc
Confidence 346888887765556667778889999767777877774
No 177
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=20.91 E-value=3e+02 Score=27.92 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=34.1
Q ss_pred cEEEEEeCChhhH-----HHHHHHHHcCCCEEEEEC---------CHHHHHHHHHhcCCCccEEE
Q 039733 73 LKVLLVENDDSTR-----HVVSALLRNCSYEVTAVA---------NSLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 73 ~rVLLVEDD~~~r-----eiL~~lLe~~GyeV~~A~---------dg~eAle~L~~~~~~pDLII 123 (399)
.|+|||-|..... ..+...|+..|+++..+. +..++++.++ ...+|+||
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~II 88 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAK--KFNADFVI 88 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHH--hcCCCEEE
Confidence 5899998876522 557788888887766553 2456667777 57788776
No 178
>PRK08017 oxidoreductase; Provisional
Probab=20.45 E-value=3.3e+02 Score=25.04 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=30.5
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+|||..-.-.+...+...|...|++|+.+....+.++.+. ...+..+.+|+.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~--~~~~~~~~~D~~ 55 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN--SLGFTGILLDLD 55 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH--hCCCeEEEeecC
Confidence 5777777667777777777767777665443333344443 223455666654
No 179
>PRK05693 short chain dehydrogenase; Provisional
Probab=20.39 E-value=3.3e+02 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=12.8
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEE
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVT 100 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~ 100 (399)
+|||..-...+...+...|...|+.|+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~ 29 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVW 29 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEE
Confidence 344444444444444444444455544
Done!