Query 039733
Match_columns 399
No_of_seqs 301 out of 1656
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 22:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lpm_A Two-component response 98.7 6.7E-09 2.3E-13 88.9 3.5 58 68-127 4-62 (123)
2 3to5_A CHEY homolog; alpha(5)b 98.6 5.2E-08 1.8E-12 84.3 6.4 54 72-127 12-66 (134)
3 3mm4_A Histidine kinase homolo 98.5 1.2E-07 4.2E-12 85.3 7.5 88 35-127 29-128 (206)
4 3gl9_A Response regulator; bet 98.5 3.6E-07 1.2E-11 74.4 7.8 53 73-127 3-55 (122)
5 3f6p_A Transcriptional regulat 98.4 6.4E-07 2.2E-11 72.5 8.5 53 73-127 3-55 (120)
6 3t6k_A Response regulator rece 98.4 8.5E-07 2.9E-11 73.5 7.8 54 72-127 4-57 (136)
7 3h5i_A Response regulator/sens 98.4 1E-06 3.4E-11 73.1 8.3 55 71-127 4-59 (140)
8 3i42_A Response regulator rece 98.4 8E-07 2.7E-11 71.9 7.1 54 72-127 3-56 (127)
9 3eod_A Protein HNR; response r 98.3 1.6E-06 5.5E-11 70.4 8.6 55 71-127 6-60 (130)
10 3rqi_A Response regulator prot 98.3 1.1E-06 3.8E-11 77.0 7.8 54 72-127 7-60 (184)
11 3gt7_A Sensor protein; structu 98.3 1.5E-06 5.2E-11 73.5 8.0 55 71-127 6-60 (154)
12 3grc_A Sensor protein, kinase; 98.3 1.7E-06 5.7E-11 71.2 7.9 54 72-127 6-59 (140)
13 2rdm_A Response regulator rece 98.3 2.4E-06 8.3E-11 69.1 8.8 55 71-127 4-59 (132)
14 4e7p_A Response regulator; DNA 98.3 1.5E-06 5.1E-11 72.9 7.5 57 69-127 17-75 (150)
15 3cg4_A Response regulator rece 98.3 2.3E-06 8E-11 70.3 8.5 55 71-127 6-60 (142)
16 3m6m_D Sensory/regulatory prot 98.3 1.4E-06 4.9E-11 72.9 7.3 55 71-127 13-67 (143)
17 3c3m_A Response regulator rece 98.3 2.2E-06 7.4E-11 70.9 7.8 54 72-127 3-56 (138)
18 3a10_A Response regulator; pho 98.3 2.4E-06 8.3E-11 67.8 7.8 53 73-127 2-54 (116)
19 3hv2_A Response regulator/HD d 98.2 2.3E-06 7.9E-11 71.9 7.9 55 71-127 13-67 (153)
20 1srr_A SPO0F, sporulation resp 98.2 1.9E-06 6.5E-11 69.4 7.1 54 72-127 3-56 (124)
21 3kht_A Response regulator; PSI 98.2 2.1E-06 7.2E-11 71.1 7.4 55 71-127 4-60 (144)
22 3lua_A Response regulator rece 98.2 1.6E-06 5.5E-11 71.5 6.7 54 72-127 4-59 (140)
23 3lte_A Response regulator; str 98.2 2.6E-06 8.7E-11 69.2 7.6 54 72-127 6-59 (132)
24 3crn_A Response regulator rece 98.2 2.7E-06 9.2E-11 69.8 7.7 54 72-127 3-56 (132)
25 2gkg_A Response regulator homo 98.2 1.8E-06 6E-11 69.0 6.1 54 72-127 5-58 (127)
26 3hzh_A Chemotaxis response reg 98.2 2.3E-06 7.8E-11 72.6 7.1 55 71-127 35-92 (157)
27 2qr3_A Two-component system re 98.2 3.3E-06 1.1E-10 69.0 7.6 54 72-127 3-56 (140)
28 2a9o_A Response regulator; ess 98.2 3E-06 1E-10 67.3 7.0 53 73-127 2-54 (120)
29 3n0r_A Response regulator; sig 98.2 2.4E-06 8.3E-11 81.8 7.5 60 72-133 160-222 (286)
30 2qxy_A Response regulator; reg 98.2 3.7E-06 1.2E-10 69.3 7.7 54 72-127 4-57 (142)
31 3c97_A Signal transduction his 98.2 3.8E-06 1.3E-10 69.4 7.7 54 72-127 10-63 (140)
32 2pl1_A Transcriptional regulat 98.2 4.2E-06 1.4E-10 66.7 7.7 53 73-127 1-53 (121)
33 3jte_A Response regulator rece 98.2 5.6E-06 1.9E-10 68.3 8.5 56 72-127 3-58 (143)
34 3ilh_A Two component response 98.2 4E-06 1.4E-10 68.8 7.6 55 71-127 8-69 (146)
35 1k66_A Phytochrome response re 98.2 4.9E-06 1.7E-10 68.4 8.1 56 70-127 4-71 (149)
36 1xhf_A DYE resistance, aerobic 98.2 5.2E-06 1.8E-10 66.5 8.0 53 73-127 4-56 (123)
37 1zgz_A Torcad operon transcrip 98.2 4.5E-06 1.6E-10 66.8 7.6 53 73-127 3-55 (122)
38 2r25_B Osmosensing histidine p 98.2 3.7E-06 1.3E-10 69.4 7.2 53 73-127 3-61 (133)
39 3kto_A Response regulator rece 98.2 1.4E-06 4.9E-11 71.8 4.7 54 72-127 6-59 (136)
40 1tmy_A CHEY protein, TMY; chem 98.2 3.6E-06 1.2E-10 67.2 6.9 54 72-127 2-56 (120)
41 3hdv_A Response regulator; PSI 98.2 4.1E-06 1.4E-10 68.5 7.4 55 72-127 7-61 (136)
42 3hdg_A Uncharacterized protein 98.2 2.9E-06 9.9E-11 69.5 6.5 54 72-127 7-60 (137)
43 3r0j_A Possible two component 98.2 3.2E-06 1.1E-10 77.6 7.4 54 72-127 23-76 (250)
44 2jba_A Phosphate regulon trans 98.1 2.5E-06 8.4E-11 68.7 5.7 54 72-127 2-55 (127)
45 2rjn_A Response regulator rece 98.1 6.4E-06 2.2E-10 69.1 8.4 55 71-127 6-60 (154)
46 3nhm_A Response regulator; pro 98.1 5.3E-06 1.8E-10 67.4 7.5 53 72-127 4-56 (133)
47 1mvo_A PHOP response regulator 98.1 4.7E-06 1.6E-10 67.9 7.1 54 72-127 3-56 (136)
48 1dbw_A Transcriptional regulat 98.1 6.4E-06 2.2E-10 66.6 7.8 54 72-127 3-56 (126)
49 1mb3_A Cell division response 98.1 4.7E-06 1.6E-10 66.7 6.9 53 73-127 2-54 (124)
50 2b4a_A BH3024; flavodoxin-like 98.1 3.8E-06 1.3E-10 69.1 6.5 55 71-127 14-69 (138)
51 3cz5_A Two-component response 98.1 6.9E-06 2.4E-10 68.8 8.0 56 70-127 3-60 (153)
52 2qzj_A Two-component response 98.1 6.6E-06 2.3E-10 68.1 7.7 54 72-127 4-57 (136)
53 1kgs_A DRRD, DNA binding respo 98.1 5.4E-06 1.8E-10 73.9 7.6 54 72-127 2-55 (225)
54 3h1g_A Chemotaxis protein CHEY 98.1 7.2E-06 2.5E-10 66.9 7.7 55 72-127 5-60 (129)
55 1p6q_A CHEY2; chemotaxis, sign 98.1 5.2E-06 1.8E-10 67.1 6.8 54 72-127 6-60 (129)
56 3cnb_A DNA-binding response re 98.1 6.7E-06 2.3E-10 67.3 7.2 54 72-127 8-63 (143)
57 1k68_A Phytochrome response re 98.1 1E-05 3.6E-10 65.5 8.2 53 73-127 3-64 (140)
58 1zh2_A KDP operon transcriptio 98.1 6.9E-06 2.3E-10 65.3 6.8 53 73-127 2-54 (121)
59 3kyj_B CHEY6 protein, putative 98.1 7.9E-06 2.7E-10 67.8 7.5 55 71-127 12-69 (145)
60 3cfy_A Putative LUXO repressor 98.1 5E-06 1.7E-10 68.9 6.2 53 73-127 5-57 (137)
61 3cg0_A Response regulator rece 98.1 5.3E-06 1.8E-10 67.8 6.1 55 71-127 8-63 (140)
62 3heb_A Response regulator rece 98.1 8.9E-06 3E-10 68.1 7.5 56 72-127 4-68 (152)
63 1jbe_A Chemotaxis protein CHEY 98.1 1E-05 3.5E-10 65.2 7.6 54 72-127 4-58 (128)
64 2j48_A Two-component sensor ki 98.0 9E-06 3.1E-10 63.5 7.0 53 73-127 2-54 (119)
65 2zay_A Response regulator rece 98.0 4.2E-06 1.4E-10 69.3 5.3 55 71-127 7-61 (147)
66 3f6c_A Positive transcription 98.0 3.4E-06 1.2E-10 68.6 4.6 53 73-127 2-55 (134)
67 1dz3_A Stage 0 sporulation pro 98.0 7.4E-06 2.5E-10 66.6 6.5 54 72-127 2-57 (130)
68 3n53_A Response regulator rece 98.0 7.8E-06 2.7E-10 67.3 6.7 53 72-127 3-55 (140)
69 3snk_A Response regulator CHEY 98.0 1.6E-06 5.3E-11 71.3 2.3 55 71-127 13-68 (135)
70 2gwr_A DNA-binding response re 98.0 5.9E-06 2E-10 75.1 6.2 55 71-127 4-58 (238)
71 3eq2_A Probable two-component 98.0 5.8E-06 2E-10 81.3 6.6 55 71-127 4-58 (394)
72 2ayx_A Sensor kinase protein R 98.0 1.3E-05 4.5E-10 74.4 8.6 55 71-127 128-182 (254)
73 1s8n_A Putative antiterminator 98.0 9.4E-06 3.2E-10 71.8 7.2 53 73-127 14-67 (205)
74 2oqr_A Sensory transduction pr 98.0 9.6E-06 3.3E-10 72.7 6.9 54 72-127 4-57 (230)
75 1dcf_A ETR1 protein; beta-alph 98.0 1.3E-05 4.6E-10 65.6 7.2 53 72-127 7-59 (136)
76 1yio_A Response regulatory pro 98.0 1.1E-05 3.7E-10 71.2 7.0 54 72-127 4-57 (208)
77 3kcn_A Adenylate cyclase homol 98.0 1.6E-05 5.4E-10 66.6 7.6 54 72-127 4-57 (151)
78 2qvg_A Two component response 98.0 1.3E-05 4.4E-10 65.9 6.8 54 72-127 7-68 (143)
79 3q9s_A DNA-binding response re 98.0 1.4E-05 4.8E-10 73.9 7.8 54 72-127 37-90 (249)
80 1i3c_A Response regulator RCP1 98.0 2.4E-05 8.1E-10 65.5 8.3 56 72-127 8-70 (149)
81 1qkk_A DCTD, C4-dicarboxylate 97.9 1.2E-05 4.1E-10 67.5 6.3 54 72-127 3-56 (155)
82 1ys7_A Transcriptional regulat 97.9 1.7E-05 5.8E-10 71.0 7.6 54 72-127 7-60 (233)
83 3b2n_A Uncharacterized protein 97.9 1.2E-05 4.2E-10 65.8 5.9 54 72-127 3-58 (133)
84 2qv0_A Protein MRKE; structura 97.9 2E-05 6.8E-10 64.9 7.1 55 71-127 8-64 (143)
85 4dad_A Putative pilus assembly 97.9 7.1E-06 2.4E-10 68.0 4.3 56 71-127 19-76 (146)
86 2qsj_A DNA-binding response re 97.9 2.4E-05 8.1E-10 65.4 7.5 54 72-127 3-59 (154)
87 2pln_A HP1043, response regula 97.9 3E-05 1E-09 63.5 7.7 51 71-123 17-67 (137)
88 3eqz_A Response regulator; str 97.9 1E-05 3.4E-10 65.5 4.6 53 72-127 3-55 (135)
89 3t8y_A CHEB, chemotaxis respon 97.9 2.2E-05 7.6E-10 67.2 6.8 56 70-127 23-80 (164)
90 3cu5_A Two component transcrip 97.9 2.1E-05 7.2E-10 65.4 6.4 54 72-127 2-58 (141)
91 3luf_A Two-component system re 97.8 3.3E-05 1.1E-09 72.2 8.0 55 72-127 124-178 (259)
92 1a04_A Nitrate/nitrite respons 97.8 2.3E-05 8E-10 69.6 6.5 54 72-127 5-60 (215)
93 3dzd_A Transcriptional regulat 97.8 2.5E-05 8.5E-10 77.6 7.2 52 74-127 2-53 (368)
94 3eul_A Possible nitrate/nitrit 97.8 2.5E-05 8.6E-10 65.3 6.2 55 71-127 14-70 (152)
95 1dc7_A NTRC, nitrogen regulati 97.8 9.5E-06 3.2E-10 64.6 2.8 53 73-127 4-56 (124)
96 2jk1_A HUPR, hydrogenase trans 97.8 4.4E-05 1.5E-09 62.8 6.8 52 73-127 2-53 (139)
97 3c3w_A Two component transcrip 97.7 3.9E-05 1.3E-09 69.3 6.6 54 72-127 1-56 (225)
98 3sy8_A ROCR; TIM barrel phosph 97.7 4.5E-05 1.5E-09 75.7 7.4 54 72-127 3-58 (400)
99 1w25_A Stalked-cell differenti 97.7 4.8E-05 1.7E-09 75.8 6.7 53 73-127 2-54 (459)
100 1ny5_A Transcriptional regulat 97.6 5.5E-05 1.9E-09 75.4 6.6 53 73-127 1-53 (387)
101 1p2f_A Response regulator; DRR 97.4 0.00014 4.7E-09 64.7 5.5 52 71-127 1-52 (220)
102 2hqr_A Putative transcriptiona 97.4 0.00018 6.2E-09 64.1 6.3 49 73-123 1-49 (223)
103 3bre_A Probable two-component 97.4 8.3E-05 2.8E-09 71.3 3.9 54 72-127 18-72 (358)
104 1a2o_A CHEB methylesterase; ba 97.4 0.00021 7.3E-09 70.5 6.8 54 72-127 3-58 (349)
105 2vyc_A Biodegradative arginine 97.3 0.00031 1E-08 76.2 7.3 52 74-127 2-62 (755)
106 3klo_A Transcriptional regulat 97.0 0.00025 8.5E-09 63.7 2.1 55 71-127 6-63 (225)
107 1qo0_D AMIR; binding protein, 96.9 0.00036 1.2E-08 61.0 2.7 50 72-127 12-61 (196)
108 3luf_A Two-component system re 96.8 0.00027 9.2E-09 65.9 1.1 52 73-127 5-57 (259)
109 2ayx_A Sensor kinase protein R 94.5 0.035 1.2E-06 51.2 4.9 47 72-127 11-57 (254)
110 3rht_A (gatase1)-like protein; 80.5 0.82 2.8E-05 43.5 2.8 50 72-125 4-57 (259)
111 3fkq_A NTRC-like two-domain pr 76.0 4.3 0.00015 39.6 6.5 58 68-127 17-77 (373)
112 1w25_A Stalked-cell differenti 58.0 25 0.00084 34.4 7.8 52 72-127 152-203 (459)
113 1qdl_B Protein (anthranilate s 55.8 6.3 0.00022 34.8 2.8 48 75-124 4-51 (195)
114 2yxb_A Coenzyme B12-dependent 55.7 22 0.00075 30.8 6.2 54 72-127 18-78 (161)
115 3n75_A LDC, lysine decarboxyla 54.8 12 0.0004 40.5 5.1 41 86-127 20-60 (715)
116 4gud_A Imidazole glycerol phos 52.7 17 0.00057 32.1 5.1 44 73-124 3-46 (211)
117 2lci_A Protein OR36; structura 52.1 35 0.0012 28.2 6.4 39 75-113 80-118 (134)
118 1i1q_B Anthranilate synthase c 51.6 25 0.00086 30.7 6.0 41 73-113 1-44 (192)
119 2oo3_A Protein involved in cat 45.9 15 0.00052 35.4 3.8 55 73-127 114-168 (283)
120 3cwo_X Beta/alpha-barrel prote 43.8 2.8 9.7E-05 36.6 -1.5 29 97-127 6-34 (237)
121 3ic5_A Putative saccharopine d 43.1 55 0.0019 24.9 6.2 53 72-127 5-58 (118)
122 1wl8_A GMP synthase [glutamine 41.7 26 0.00088 30.4 4.4 47 75-124 3-49 (189)
123 4dzz_A Plasmid partitioning pr 41.6 34 0.0012 29.1 5.2 53 72-127 30-84 (206)
124 2iuy_A Avigt4, glycosyltransfe 39.0 56 0.0019 29.9 6.5 42 84-127 35-93 (342)
125 1r8j_A KAIA; circadian clock p 38.3 75 0.0026 30.7 7.3 55 72-126 9-63 (289)
126 3e8x_A Putative NAD-dependent 37.3 31 0.0011 30.2 4.3 55 71-127 20-75 (236)
127 3tr6_A O-methyltransferase; ce 36.3 1.4E+02 0.0048 25.6 8.4 56 72-127 89-149 (225)
128 3duw_A OMT, O-methyltransferas 36.1 1.6E+02 0.0056 25.2 8.8 55 73-127 84-142 (223)
129 3h2s_A Putative NADH-flavin re 35.4 52 0.0018 28.2 5.4 52 74-127 2-53 (224)
130 2avd_A Catechol-O-methyltransf 35.2 1E+02 0.0034 26.6 7.3 55 73-127 95-154 (229)
131 2qfm_A Spermine synthase; sper 34.9 71 0.0024 31.7 6.8 55 73-127 212-276 (364)
132 3dr5_A Putative O-methyltransf 33.8 40 0.0014 30.1 4.5 53 73-127 82-138 (221)
133 3c3y_A Pfomt, O-methyltransfer 33.7 1.1E+02 0.0038 27.2 7.5 55 73-127 96-156 (237)
134 2l69_A Rossmann 2X3 fold prote 33.2 1.3E+02 0.0044 24.9 6.9 42 73-114 3-44 (134)
135 1iow_A DD-ligase, DDLB, D-ALA\ 33.2 23 0.0008 32.3 2.9 54 72-127 2-63 (306)
136 1ka9_H Imidazole glycerol phos 32.5 42 0.0015 29.3 4.3 45 72-124 2-46 (200)
137 1ccw_A Protein (glutamate muta 31.4 54 0.0019 27.4 4.6 45 81-127 16-63 (137)
138 1sui_A Caffeoyl-COA O-methyltr 31.2 1.4E+02 0.0046 27.0 7.7 55 73-127 105-165 (247)
139 3c6k_A Spermine synthase; sper 31.0 89 0.003 31.3 6.8 55 73-127 229-293 (381)
140 3cbg_A O-methyltransferase; cy 30.9 1.4E+02 0.0048 26.3 7.6 55 73-127 98-157 (232)
141 3ius_A Uncharacterized conserv 30.9 37 0.0013 30.5 3.7 54 71-127 4-57 (286)
142 3l4e_A Uncharacterized peptida 30.6 93 0.0032 28.0 6.4 49 72-124 27-85 (206)
143 3u81_A Catechol O-methyltransf 29.6 74 0.0025 27.7 5.4 55 73-127 84-143 (221)
144 3iwt_A 178AA long hypothetical 29.5 75 0.0026 27.4 5.4 44 82-125 39-88 (178)
145 2gk3_A Putative cytoplasmic pr 28.3 35 0.0012 31.6 3.1 37 86-127 43-86 (256)
146 3llv_A Exopolyphosphatase-rela 28.0 80 0.0027 25.4 5.0 52 73-127 7-58 (141)
147 2pyy_A Ionotropic glutamate re 27.9 1.6E+02 0.0056 24.2 7.1 49 72-127 112-160 (228)
148 3eme_A Rhodanese-like domain p 27.9 98 0.0034 23.8 5.3 38 73-110 57-94 (103)
149 4e5v_A Putative THUA-like prot 27.5 18 0.00062 34.4 1.0 54 71-127 3-67 (281)
150 1lst_A Lysine, arginine, ornit 27.1 1.4E+02 0.0047 25.2 6.6 52 73-127 112-163 (239)
151 3foj_A Uncharacterized protein 27.1 1.1E+02 0.0039 23.3 5.6 38 73-110 57-94 (100)
152 2vpi_A GMP synthase; guanine m 26.9 52 0.0018 29.7 4.0 50 72-124 24-73 (218)
153 1y80_A Predicted cobalamin bin 26.5 1.2E+02 0.0041 26.7 6.3 54 72-127 88-148 (210)
154 2v25_A Major cell-binding fact 26.3 1.9E+02 0.0065 24.5 7.4 52 73-127 149-202 (259)
155 2hnk_A SAM-dependent O-methylt 25.8 1.9E+02 0.0067 25.2 7.6 54 73-127 86-156 (239)
156 2a9v_A GMP synthase; structura 25.8 12 0.0004 33.7 -0.6 33 71-103 12-44 (212)
157 2fhp_A Methylase, putative; al 25.7 2.4E+02 0.0081 23.1 7.7 55 73-127 68-125 (187)
158 3p9n_A Possible methyltransfer 25.6 1.3E+02 0.0043 25.3 6.1 53 73-127 68-122 (189)
159 3gjy_A Spermidine synthase; AP 25.6 68 0.0023 31.1 4.7 53 73-127 114-168 (317)
160 3ia7_A CALG4; glycosysltransfe 25.5 1.1E+02 0.0037 28.5 6.1 12 116-127 100-112 (402)
161 3gk5_A Uncharacterized rhodane 25.3 1.1E+02 0.0036 24.0 5.1 41 73-113 56-96 (108)
162 3ezx_A MMCP 1, monomethylamine 24.7 1.2E+02 0.0042 27.3 6.1 50 73-124 93-149 (215)
163 3d54_D Phosphoribosylformylgly 24.1 55 0.0019 28.5 3.5 45 72-124 2-47 (213)
164 3tfw_A Putative O-methyltransf 23.8 1.2E+02 0.004 27.2 5.8 54 73-127 89-145 (248)
165 2q5c_A NTRC family transcripti 22.9 2.8E+02 0.0096 24.4 8.0 55 71-125 3-58 (196)
166 3cvo_A Methyltransferase-like 22.1 70 0.0024 29.0 3.9 25 73-97 52-76 (202)
167 2nv0_A Glutamine amidotransfer 21.9 70 0.0024 27.7 3.7 43 73-124 2-44 (196)
168 3flh_A Uncharacterized protein 21.5 1.1E+02 0.0037 24.5 4.6 41 73-113 72-114 (124)
169 3hix_A ALR3790 protein; rhodan 21.4 1.3E+02 0.0045 23.3 5.0 40 73-112 53-93 (106)
170 2kx7_A Sensor-like histidine k 21.4 41 0.0014 28.5 2.0 48 72-127 7-54 (117)
171 3orh_A Guanidinoacetate N-meth 20.4 1.4E+02 0.0048 26.5 5.5 53 73-127 84-137 (236)
172 3iwh_A Rhodanese-like domain p 20.2 1.7E+02 0.0057 23.1 5.3 39 73-111 57-95 (103)
173 1wxx_A TT1595, hypothetical pr 20.0 3.2E+02 0.011 26.1 8.4 55 73-127 232-288 (382)
No 1
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=98.69 E-value=6.7e-09 Score=88.92 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 68 LPTRSLKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 68 lp~~~~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|....+|||||||++.++..+..+|+..||+|+ .|.++.+|++++. ...||+||+|+.
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~--~~~~DlvllDi~ 62 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR--KGQFDIAIIDVN 62 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH--HCCSSEEEECSS
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCCCEEEEecC
Confidence 344567999999999999999999999999976 7899999999999 689999999999
No 2
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=98.60 E-value=5.2e-08 Score=84.28 Aligned_cols=54 Identities=26% Similarity=0.519 Sum_probs=50.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|||||||++.+|..+..+|+.+||. |..|.+|.+|++++. ...|||||+|+.
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~--~~~~DlillD~~ 66 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWN 66 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH--HHCCSEEEEESC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH--hCCCCEEEEcCC
Confidence 468999999999999999999999996 778999999999999 678999999999
No 3
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=98.54 E-value=1.2e-07 Score=85.28 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=52.0
Q ss_pred CCCCCCCccccCCCcCCCCCCCCCCccccccccCCCCCcEEEEEeCChhhHHHHHHHHHcCCC-EEEEECCHHHHHHHHH
Q 039733 35 SNNGPGGTIQVHDGFQISQQQQPQGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSY-EVTAVANSLHAWKILE 113 (399)
Q Consensus 35 ~~~g~~~av~~~~~~~~p~~~~~~~~~~~~e~~lp~~~~rVLLVEDD~~~reiL~~lLe~~Gy-eV~~A~dg~eAle~L~ 113 (399)
.+.|+.|.+..+...+.+.+.. ..+. ........+||||||++.++..+..+|+..|| .|..+.++.+|++++.
T Consensus 29 ~g~Gs~f~~~lP~~~~~~~~~~-~~~~----~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~ 103 (206)
T 3mm4_A 29 TRVKSVRTGRKPIGNPEDEQET-SKPS----DDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVT 103 (206)
T ss_dssp -------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHH
T ss_pred CCCcceeeeccCCCCCcccccc-cCCC----cccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHH
Confidence 5667888877764332221111 1111 11222456999999999999999999999999 8999999999999998
Q ss_pred hc-----------CCCccEEEEcCC
Q 039733 114 DL-----------TNHIDIVLTESS 127 (399)
Q Consensus 114 ~~-----------~~~pDLIIlDl~ 127 (399)
.. ...|||||+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~dlillD~~ 128 (206)
T 3mm4_A 104 EGLTQREEQGSVDKLPFDYIFMDCQ 128 (206)
T ss_dssp HHHHHHHHHTCSSCCSCSEEEEESC
T ss_pred hhcccccccccccCCCCCEEEEcCC
Confidence 31 137999999998
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=98.47 E-value=3.6e-07 Score=74.39 Aligned_cols=53 Identities=30% Similarity=0.343 Sum_probs=50.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~--~~~~dlvllD~~ 55 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--EFTPDLIVLXIM 55 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT--TBCCSEEEECSC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH--hcCCCEEEEecc
Confidence 58999999999999999999999999999999999999998 778999999998
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=98.44 E-value=6.4e-07 Score=72.54 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=50.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlii~D~~ 55 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE--ELQPDLILLDIM 55 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--TTCCSEEEEETT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh--hCCCCEEEEeCC
Confidence 58999999999999999999999999999999999999999 788999999998
No 6
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=98.37 E-value=8.5e-07 Score=73.53 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=51.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~ 57 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY--KNLPDALICDVL 57 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hCCCCEEEEeCC
Confidence 458999999999999999999999999999999999999998 678999999998
No 7
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=98.37 E-value=1e-06 Score=73.08 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=50.6
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+. . ..||+||+|+.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~~dlvi~D~~ 59 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVS--GGWYPDLILMDIE 59 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--TTCCCSEEEEESS
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHh--cCCCCCEEEEecc
Confidence 3469999999999999999999999999999999999999998 5 68999999998
No 8
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=98.35 E-value=8e-07 Score=71.93 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=51.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~D~~ 56 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS--TRGYDAVFIDLN 56 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH--HSCCSEEEEESB
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH--hcCCCEEEEeCC
Confidence 468999999999999999999999999999999999999998 678999999998
No 9
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=98.33 E-value=1.6e-06 Score=70.40 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=51.8
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~ 60 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--GFTPDLMICDIA 60 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT--TCCCSEEEECCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh--cCCCCEEEEecC
Confidence 3469999999999999999999999999999999999999998 788999999998
No 10
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=98.32 E-value=1.1e-06 Score=77.02 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=51.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~ 60 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG--AEKFEFITVXLH 60 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT--TSCCSEEEECSE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEecc
Confidence 469999999999999999999999999999999999999998 788999999998
No 11
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=98.30 E-value=1.5e-06 Score=73.47 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=51.6
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlii~D~~ 60 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS--LTRPDLIISDVL 60 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT--TCCCSEEEEESC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hCCCCEEEEeCC
Confidence 3469999999999999999999999999999999999999998 788999999998
No 12
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=98.30 E-value=1.7e-06 Score=71.22 Aligned_cols=54 Identities=11% Similarity=0.261 Sum_probs=51.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~ 59 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA--RRPYAAMTVDLN 59 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH--HSCCSEEEECSC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 469999999999999999999999999999999999999998 678999999998
No 13
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=98.30 E-value=2.4e-06 Score=69.15 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=51.4
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCC-CccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTN-HIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~-~pDLIIlDl~ 127 (399)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+. .. .||+||+|+.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~~dlvi~d~~ 59 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLK--SGAAIDGVVTDIR 59 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--TTCCCCEEEEESC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--cCCCCCEEEEeee
Confidence 4569999999999999999999999999999999999999998 66 8999999998
No 14
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=98.28 E-value=1.5e-06 Score=72.88 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=50.9
Q ss_pred CCCCcEEEEEeCChhhHHHHHHHHHcCC--CEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 69 PTRSLKVLLVENDDSTRHVVSALLRNCS--YEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 69 p~~~~rVLLVEDD~~~reiL~~lLe~~G--yeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+++||||||++.++..+..+|+..| |.|..+.++.+|++.+. ...||+||+|+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--~~~~dlii~D~~ 75 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE--KESVDIAILDVE 75 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT--TSCCSEEEECSS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh--ccCCCEEEEeCC
Confidence 3456799999999999999999999887 78999999999999998 788999999998
No 15
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=98.28 E-value=2.3e-06 Score=70.30 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=52.0
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+.+||||||++..+..+..+|+..||+|..+.++.+|++.+. ...||+||+|+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~d~~ 60 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK--KGFSGVVLLDIM 60 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--TCCCEEEEEESC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 4579999999999999999999999999999999999999999 778999999998
No 16
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=98.28 E-value=1.4e-06 Score=72.90 Aligned_cols=55 Identities=20% Similarity=0.397 Sum_probs=48.8
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..++||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~ 67 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA--EEDYDAVIVDLH 67 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH--HSCCSEEEEESC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--cCCCCEEEEeCC
Confidence 3469999999999999999999999999999999999999998 678999999998
No 17
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=98.26 E-value=2.2e-06 Score=70.86 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=50.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++.++..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvi~D~~ 56 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN--ATPPDLVLLDIM 56 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh--ccCCCEEEEeCC
Confidence 358999999999999999999999999999999999999998 578999999998
No 18
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=98.26 E-value=2.4e-06 Score=67.81 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=50.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~ 54 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF--SGNYDLVILDIE 54 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEECSC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEECC
Confidence 48999999999999999999999999999999999999998 578999999998
No 19
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=98.25 E-value=2.3e-06 Score=71.93 Aligned_cols=55 Identities=20% Similarity=0.420 Sum_probs=51.7
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~D~~ 67 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA--SREVDLVISAAH 67 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH--HSCCSEEEEESC
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH--cCCCCEEEEeCC
Confidence 3469999999999999999999999999999999999999998 678999999998
No 20
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=98.25 E-value=1.9e-06 Score=69.39 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=50.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++..+..+..+|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~ 56 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMK 56 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HHCCSEEEEESC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh--ccCCCEEEEecC
Confidence 358999999999999999999999999999999999999998 568999999998
No 21
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=98.24 E-value=2.1e-06 Score=71.09 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=50.9
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCE--EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYE--VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~Gye--V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+++||||||++..+..+..+|+..||. |..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--~~~~dlii~D~~ 60 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ--QAKYDLIILDIG 60 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT--TCCCSEEEECTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh--cCCCCEEEEeCC
Confidence 4579999999999999999999999987 889999999999998 788999999998
No 22
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=98.24 E-value=1.6e-06 Score=71.50 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=51.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHc-CCCEEEEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRN-CSYEVTAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~-~GyeV~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+. .||+|..+.++.+|++.+. . ..||+||+|+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~--~~~~~dlvi~D~~ 59 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK--DLDSITLIIMDIA 59 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT--TCCCCSEEEECSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh--cCCCCcEEEEeCC
Confidence 46999999999999999999999 9999999999999999998 7 89999999997
No 23
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=98.23 E-value=2.6e-06 Score=69.21 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=50.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~d~~ 59 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS--TFEPAIMTLDLS 59 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HTCCSEEEEESC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH--hcCCCEEEEecC
Confidence 469999999999999999999999999999999999999998 678999999998
No 24
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=98.23 E-value=2.7e-06 Score=69.78 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=50.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~ 56 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE--NEFFNLALFXIK 56 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEECSB
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh--cCCCCEEEEecC
Confidence 458999999999999999999999999999999999999998 578999999998
No 25
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=98.21 E-value=1.8e-06 Score=68.96 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=50.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..||++..+.++.+|++.+. ...||+||+|+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~~~dlvi~d~~ 58 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR--RDRPDLVVLAVD 58 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH--HHCCSEEEEESB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH--hcCCCEEEEeCC
Confidence 359999999999999999999999999999999999999998 567999999987
No 26
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=98.21 E-value=2.3e-06 Score=72.62 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=50.9
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCC--CccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTN--HIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~--~pDLIIlDl~ 127 (399)
++++||||||++..+..+..+|+..||.+. .+.++.+|++.+. .. .|||||+|+.
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~--~~~~~~dliilD~~ 92 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK--NHYPNIDIVTLXIT 92 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HHGGGCCEEEECSS
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH--hcCCCCCEEEEecc
Confidence 456999999999999999999999999988 9999999999998 45 7899999998
No 27
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=98.20 E-value=3.3e-06 Score=69.05 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=51.0
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~ 56 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR--EENPEVVLLDMN 56 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH--HSCEEEEEEETT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH--cCCCCEEEEeCC
Confidence 469999999999999999999999999999999999999998 578999999997
No 28
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=98.19 E-value=3e-06 Score=67.30 Aligned_cols=53 Identities=21% Similarity=0.373 Sum_probs=49.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~ 54 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE--AEQPDIIILDLM 54 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HHCCSEEEECSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH--hCCCCEEEEecc
Confidence 48999999999999999999999999999999999999998 568999999998
No 29
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=98.19 E-value=2.4e-06 Score=81.78 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=53.9
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC-C-CCCCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS-G-SGSGS 133 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~-G-sssgs 133 (399)
..+||||||++.++..+..+|+..||.|. .+.+|.+|++.+. ...|||||+|+. - ...|-
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~--~~~~dlvl~D~~MPd~mdG~ 222 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT--RRTPGLVLADIQLADGSSGI 222 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HCCCSEEEEESCCTTSCCTT
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH--hCCCCEEEEcCCCCCCCCHH
Confidence 35899999999999999999999999999 9999999999999 678999999998 3 44444
No 30
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=98.19 E-value=3.7e-06 Score=69.31 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=50.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..||+|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~ 57 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR--REKIDLVFVDVF 57 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT--TSCCSEEEEECT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--ccCCCEEEEeCC
Confidence 468999999999999999999999999999999999999998 678999999984
No 31
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=98.18 E-value=3.8e-06 Score=69.42 Aligned_cols=54 Identities=28% Similarity=0.562 Sum_probs=50.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++..+..+..+|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~--~~~~dlvllD~~ 63 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ--NRQFDVIIMDIQ 63 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH--HSCCSEEEECTT
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 358999999999999999999999999999999999999998 578999999998
No 32
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=98.18 E-value=4.2e-06 Score=66.70 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=50.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~--~~~~dlil~D~~ 53 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN--EHIPDIAIVDLG 53 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEECSC
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh--ccCCCEEEEecC
Confidence 37999999999999999999999999999999999999998 578999999998
No 33
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=98.17 E-value=5.6e-06 Score=68.27 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=51.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..||.|..+.++.+|+..+......||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~ 58 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMK 58 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCC
Confidence 56999999999999999999999999999999999999999732358999999998
No 34
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=98.17 E-value=4e-06 Score=68.84 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=51.2
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHhcC-----CCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILEDLT-----NHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~~~-----~~pDLIIlDl~ 127 (399)
.+++||||||++..+..+..+|+..|| .|..+.++.+|++.+. . ..||+||+|+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~--~~~~~~~~~dlvi~D~~ 69 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLN--ELYAAGRWPSIICIDIN 69 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH--HHHTSSCCCSEEEEESS
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHH--HhhccCCCCCEEEEcCC
Confidence 346999999999999999999999999 8999999999999998 5 78999999998
No 35
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.17 E-value=4.9e-06 Score=68.35 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCCcEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHhcC----------CCccEEEEcCC
Q 039733 70 TRSLKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILEDLT----------NHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~~~----------~~pDLIIlDl~ 127 (399)
.++.+||||||++..+..+..+|+..|| .|..+.++.+|++.+. . ..||+||+|+.
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~--~~~~~~~~~~~~~~dlvi~D~~ 71 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLY--QTGSYCNPDIAPRPAVILLDLN 71 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHH--TCCSSSCGGGCCCCSEEEECSC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHH--hcccccCcccCCCCcEEEEECC
Confidence 3456899999999999999999999998 8999999999999998 5 68999999998
No 36
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=98.17 E-value=5.2e-06 Score=66.55 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=50.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~ 56 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--EYDINLVIMDIN 56 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HSCCSEEEECSS
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh--cCCCCEEEEcCC
Confidence 48999999999999999999999999999999999999998 578999999998
No 37
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=98.17 E-value=4.5e-06 Score=66.78 Aligned_cols=53 Identities=17% Similarity=0.383 Sum_probs=50.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~ 55 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ--NQSVDLILLDIN 55 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESC
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh--cCCCCEEEEeCC
Confidence 58999999999999999999999999999999999999998 578999999998
No 38
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=98.16 E-value=3.7e-06 Score=69.35 Aligned_cols=53 Identities=15% Similarity=0.385 Sum_probs=48.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcC-----CCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLT-----NHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~-----~~pDLIIlDl~ 127 (399)
++||||||++.++..+..+|+..||. |..+.++.+|++.+. . ..||+||+|+.
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~--~~~~~~~~~dlvllD~~ 61 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVK--ELTSKGENYNMIFMDVQ 61 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH--HHHHHTCCCSEEEECSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHH--HHHhcCCCCCEEEEeCC
Confidence 58999999999999999999998985 888999999999987 4 67999999998
No 39
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=98.16 E-value=1.4e-06 Score=71.81 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~D~~ 59 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI--SDDAIGMIIEAH 59 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC--CTTEEEEEEETT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh--ccCCCEEEEeCc
Confidence 469999999999999999999999999999999999999998 788999999998
No 40
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=98.16 E-value=3.6e-06 Score=67.19 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=49.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++..+..+..+|+..||. +..+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~--~~~~dlil~D~~ 56 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK--ELKPDIVTMDIT 56 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HHCCSEEEEECS
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH--hcCCCEEEEeCC
Confidence 358999999999999999999999999 568999999999998 568999999998
No 41
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=98.16 E-value=4.1e-06 Score=68.51 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=50.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..||.|..+.++.+|+..+.. ...||+||+|+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~ 61 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY-QKRIGLMITDLR 61 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH-CTTEEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh-CCCCcEEEEecc
Confidence 5699999999999999999999999999999999999999983 234999999998
No 42
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=98.16 E-value=2.9e-06 Score=69.49 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=51.0
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~ 60 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG--LHAPDVIITDIR 60 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH--HHCCSEEEECSS
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh--ccCCCEEEEeCC
Confidence 469999999999999999999999999999999999999998 578999999998
No 43
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=98.16 E-value=3.2e-06 Score=77.57 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=51.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvllD~~ 76 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR--ETRPDAVILDVX 76 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HHCCSEEEEESC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 469999999999999999999999999999999999999998 568999999998
No 44
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=98.15 E-value=2.5e-06 Score=68.67 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=50.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~ 55 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--EPWPDLILLAWM 55 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS--SSCCSEEEEESE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh--ccCCCEEEEecC
Confidence 358999999999999999999999999999999999999988 678999999998
No 45
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=98.14 E-value=6.4e-06 Score=69.11 Aligned_cols=55 Identities=15% Similarity=0.399 Sum_probs=51.6
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+++||||||++..+..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~ 60 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK--GTSVQLVISDMR 60 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT--TSCCSEEEEESS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--cCCCCEEEEecC
Confidence 3569999999999999999999999999999999999999998 678999999998
No 46
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=98.13 E-value=5.3e-06 Score=67.37 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=49.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+ .||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~ 56 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL--AHPPDVLISDVN 56 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH--HSCCSEEEECSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 4699999999999999999999 8999999999999999998 678999999998
No 47
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=98.13 E-value=4.7e-06 Score=67.94 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=50.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++..+..+..+|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~ 56 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE--TEKPDLIVLDVM 56 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HHCCSEEEEESS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh--hcCCCEEEEecC
Confidence 458999999999999999999999999999999999999998 568999999998
No 48
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=98.13 E-value=6.4e-06 Score=66.61 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=50.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~D~~ 56 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP--DVRNGVLVTDLR 56 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG--GCCSEEEEEECC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--cCCCCEEEEECC
Confidence 358999999999999999999999999999999999999998 678999999998
No 49
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=98.13 E-value=4.7e-06 Score=66.71 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=49.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~ 54 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR--ENKPDLILMDIQ 54 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH--HHCCSEEEEESB
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh--cCCCCEEEEeCC
Confidence 48999999999999999999999999999999999999998 568999999998
No 50
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=98.12 E-value=3.8e-06 Score=69.07 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=51.3
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+. . ..||+||+|+.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~~dlvilD~~ 69 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS--QLSTCDLLIVSDQ 69 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG--GGGSCSEEEEETT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH--hCCCCCEEEEeCC
Confidence 3468999999999999999999999999999999999999998 6 68999999998
No 51
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=98.11 E-value=6.9e-06 Score=68.81 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=51.1
Q ss_pred CCCcEEEEEeCChhhHHHHHHHHHc-CCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 70 TRSLKVLLVENDDSTRHVVSALLRN-CSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVEDD~~~reiL~~lLe~-~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+++||||||++..+..+..+|+. .||.+. .+.++.+|+..+. ...||+||+|+.
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~--~~~~dlii~D~~ 60 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR--ETTPDIVVMDLT 60 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH--TTCCSEEEECSC
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh--cCCCCEEEEecC
Confidence 3457999999999999999999998 799987 8999999999999 678999999998
No 52
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=98.11 E-value=6.6e-06 Score=68.05 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=50.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvllD~~ 57 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF--SNKYDLIFLEII 57 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HCCCSEEEEESE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--hcCCCEEEEeCC
Confidence 358999999999999999999999999999999999999998 578999999998
No 53
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=98.11 E-value=5.4e-06 Score=73.89 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=51.0
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~~~dlvllD~~ 55 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL--NEPFDVVILDIM 55 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCC
Confidence 469999999999999999999999999999999999999998 578999999998
No 54
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=98.11 E-value=7.2e-06 Score=66.92 Aligned_cols=55 Identities=24% Similarity=0.543 Sum_probs=49.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..||. +..+.++.+|+..+.. ...||+||+|+.
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~ 60 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA-NADTKVLITDWN 60 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-CTTCCEEEECSC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCCCCEEEEeCC
Confidence 468999999999999999999999996 8899999999998873 347999999998
No 55
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=98.10 E-value=5.2e-06 Score=67.08 Aligned_cols=54 Identities=22% Similarity=0.458 Sum_probs=50.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCC-EEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSY-EVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gy-eV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++..+..+..+|+..|| .+..+.++.+|+..+. ...||+||+|+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~ 60 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA--QNPHHLVISDFN 60 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH--TSCCSEEEECSS
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH--cCCCCEEEEeCC
Confidence 45899999999999999999999999 7889999999999998 678999999998
No 56
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=98.08 E-value=6.7e-06 Score=67.26 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=50.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHc-CCCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRN-CSYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~-~Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++..+..+..+|+. .||. |..+.++.+|+..+. ...||+||+|+.
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--~~~~dlii~d~~ 63 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH--TVKPDVVMLDLM 63 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH--HTCCSEEEEETT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH--hcCCCEEEEecc
Confidence 46999999999999999999999 9999 999999999999998 578999999998
No 57
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.08 E-value=1e-05 Score=65.47 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=50.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHhcC-------CCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILEDLT-------NHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~~~-------~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+..|| .|..+.++.+|++.+. . ..||+||+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--~~~~~~~~~~~dlvi~d~~ 64 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLR--QEGEYANASRPDLILLXLN 64 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHT--TCGGGGSCCCCSEEEECSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHH--cccccccCCCCcEEEEecC
Confidence 5899999999999999999999998 8999999999999998 5 68999999998
No 58
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=98.07 E-value=6.9e-06 Score=65.28 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=49.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~D~~ 54 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA--TRKPDLIILDLG 54 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HHCCSEEEEESE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh--cCCCCEEEEeCC
Confidence 58999999999999999999999999999999999999887 568999999998
No 59
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=98.07 E-value=7.9e-06 Score=67.84 Aligned_cols=55 Identities=18% Similarity=0.418 Sum_probs=49.8
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcC-CCEEE-EECCHHHHHHHHHhcCC-CccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNC-SYEVT-AVANSLHAWKILEDLTN-HIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~-GyeV~-~A~dg~eAle~L~~~~~-~pDLIIlDl~ 127 (399)
...+||||||++.++..+..+|+.. ||.++ .+.++.+|++.+. .. .||+||+|+.
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--~~~~~dlvilD~~ 69 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA--AQPNVDLILLDIE 69 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH--HCTTCCEEEECTT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh--cCCCCCEEEEeCC
Confidence 4568999999999999999999988 89864 8999999999998 56 7999999998
No 60
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.07 E-value=5e-06 Score=68.88 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=49.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvllD~~ 57 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE--RSKPQLIILDLK 57 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH--HHCCSEEEECSB
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH--hcCCCEEEEecC
Confidence 48999999999999999999999999999999999999998 568999999998
No 61
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=98.06 E-value=5.3e-06 Score=67.82 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+++||||||++..+..+..+|+..||.+. .+.++.+|+..+. ...||+||+|+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~--~~~~dlii~d~~ 63 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP--DLRPDIALVDIM 63 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH--HHCCSEEEEESS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH--hCCCCEEEEecC
Confidence 356999999999999999999999999998 5999999999998 567999999987
No 62
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=98.05 E-value=8.9e-06 Score=68.07 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=50.0
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHh-------cCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILED-------LTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~-------~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..|| .|..+.++.+|++.+.. ....||+||+|+.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~ 68 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN 68 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC
Confidence 46999999999999999999999998 89999999999999951 1468999999998
No 63
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=98.05 E-value=1e-05 Score=65.24 Aligned_cols=54 Identities=22% Similarity=0.425 Sum_probs=50.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCC-EEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSY-EVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gy-eV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..|| .+..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~ 58 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWN 58 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT--TCCCCEEEEESC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 35899999999999999999999999 6899999999999998 678999999998
No 64
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=98.05 E-value=9e-06 Score=63.48 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=50.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|||||+++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~--~~~~dlii~d~~ 54 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD--LLQPIVILMAWP 54 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH--HHCCSEEEEECS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH--hcCCCEEEEecC
Confidence 48999999999999999999999999999999999999998 568999999997
No 65
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=98.04 E-value=4.2e-06 Score=69.32 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++++||||||++..+..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~d~~ 61 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV--KTHPHLIITEAN 61 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH--HHCCSEEEEESC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH--cCCCCEEEEcCC
Confidence 3569999999999999999999999999999999999999998 568999999998
No 66
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=98.04 E-value=3.4e-06 Score=68.61 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=49.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++..+..+..+|+..||.+. .+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~--~~~~dlii~d~~ 55 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE--TLKPDIVIIDVD 55 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH--HHCCSEEEEETT
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH--hcCCCEEEEecC
Confidence 5899999999999999999999999987 8999999999998 578999999998
No 67
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=98.04 E-value=7.4e-06 Score=66.60 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=48.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+.. ||.+. .+.++.+|++.+. ...||+||+|+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~dlvllD~~ 57 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE--EKRPDILLLDII 57 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH--HHCCSEEEEESC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--cCCCCEEEEecC
Confidence 358999999999999999999987 88865 7899999999998 568999999998
No 68
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=98.04 E-value=7.8e-06 Score=67.31 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=49.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+.. |.|..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~ 55 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID--HHHPDLVILDMD 55 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH--HHCCSEEEEETT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh--cCCCCEEEEeCC
Confidence 469999999999999999999988 99999999999999998 568999999998
No 69
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=98.03 E-value=1.6e-06 Score=71.30 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCC-CEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCS-YEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~G-yeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+.+||||||++..+..+..+|+..| |.|..+.++.+|++.+. ...||+||+|+.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~--~~~~dlvi~D~~ 68 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA--DTRPGIVILDLG 68 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT--TCCCSEEEEEEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh--ccCCCEEEEeCC
Confidence 34699999999999999999999999 99999999999999998 788999999998
No 70
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=98.02 E-value=5.9e-06 Score=75.10 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=51.2
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++++||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvilD~~ 58 (238)
T 2gwr_A 4 MRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR--ELRPDLVLLDLM 58 (238)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH--HHCCSEEEEESS
T ss_pred ccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 4569999999999999999999999999999999999999998 568999999998
No 71
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=98.02 E-value=5.8e-06 Score=81.29 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=51.8
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+..+||||||++.++..+..+|+..||+|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~--~~~~dlvllD~~ 58 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE--SEQPDLVICDLR 58 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH--HSCCSEEEECCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--hCCCCEEEEcCC
Confidence 3569999999999999999999999999999999999999998 678999999998
No 72
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=98.01 E-value=1.3e-05 Score=74.44 Aligned_cols=55 Identities=25% Similarity=0.527 Sum_probs=51.6
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..++||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--~~~~dlvl~D~~ 182 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVN 182 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH--HSCCSEEEEEES
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEcCC
Confidence 3569999999999999999999999999999999999999998 578999999998
No 73
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=98.01 E-value=9.4e-06 Score=71.75 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=49.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+..+|+..||.+. .+.++.+|+..+. ...||+||+|+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~--~~~~dlvi~D~~ 67 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE--LHKPDLVIMDVK 67 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HHCCSEEEEESS
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--hcCCCEEEEeCC
Confidence 5899999999999999999999999988 8999999999998 568999999998
No 74
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=97.99 E-value=9.6e-06 Score=72.66 Aligned_cols=54 Identities=30% Similarity=0.400 Sum_probs=50.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvllD~~ 57 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD--RAGADIVLLDLM 57 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH--HHCCSEEEEESS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--ccCCCEEEEECC
Confidence 469999999999999999999999999999999999999998 568999999998
No 75
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.99 E-value=1.3e-05 Score=65.57 Aligned_cols=53 Identities=26% Similarity=0.480 Sum_probs=48.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+. ... |+||+|+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~~-dlvllD~~ 59 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--HEH-KVVFMDVC 59 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC--TTC-SEEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--ccC-CEEEEeCC
Confidence 468999999999999999999999999999999999999887 444 99999998
No 76
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=97.98 E-value=1.1e-05 Score=71.19 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=50.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~ 57 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR--PEQHGCLVLDMR 57 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC--TTSCEEEEEESC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh--ccCCCEEEEeCC
Confidence 358999999999999999999999999999999999999988 678999999998
No 77
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=97.98 E-value=1.6e-05 Score=66.59 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=48.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+. ||.|..+.++.+|++.+.. ..+||+||+|+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~-~~~~dlvi~D~~ 57 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK-SDPFSVIMVDMR 57 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH-SCCCSEEEEESC
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc-CCCCCEEEEeCC
Confidence 46999999999999999999976 9999999999999999983 234699999998
No 78
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=97.97 E-value=1.3e-05 Score=65.88 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=50.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHhcC------CCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILEDLT------NHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~~~------~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..|| .|..+.++.+|+..+. . ..||+||+|+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~--~~~~~~~~~~dlii~D~~ 68 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLY--GRNKENKIHPKLILLDIN 68 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHH--TCTTCCCCCCSEEEEETT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHH--hcccccCCCCCEEEEecC
Confidence 46899999999999999999999898 8999999999999998 5 67999999998
No 79
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=97.96 E-value=1.4e-05 Score=73.90 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=51.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~DlvllD~~ 90 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR--EDHPDLILLDLG 90 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HSCCSEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEcCC
Confidence 469999999999999999999999999999999999999998 678999999998
No 80
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=97.95 E-value=2.4e-05 Score=65.54 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=49.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHhc-----CCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILEDL-----TNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~~-----~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..|| .|..+.++.+|++.+... ...||+||+|+.
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~ 70 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN 70 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 35899999999999999999998887 788999999999999720 047999999998
No 81
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=97.94 E-value=1.2e-05 Score=67.50 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=50.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dliild~~ 56 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS--ADFAGIVISDIR 56 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC--TTCCSEEEEESC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 358999999999999999999999999999999999999998 678999999998
No 82
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=97.94 E-value=1.7e-05 Score=71.01 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=50.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++.++..+..+|+..||.|..+.++.+|+..+. ...||+||+|+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~~~dlvllD~~ 60 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT--ENRPDAIVLDIN 60 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 358999999999999999999999999999999999999998 578999999998
No 83
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=97.92 E-value=1.2e-05 Score=65.85 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=48.4
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCC--CEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCS--YEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~G--yeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..| +.+..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~--~~~~dlvilD~~ 58 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE--EYNPNVVILDIE 58 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH--HHCCSEEEECSS
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh--hcCCCEEEEecC
Confidence 4589999999999999999999876 45778999999999998 568999999998
No 84
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=97.92 E-value=2e-05 Score=64.90 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=48.4
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcC-CCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNC-SYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~-Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..++||||||++..+..+..+|+.. ||. +..+.++.+|+..+. ...||+||+|+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--~~~~dlvi~d~~ 64 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ--HNKVDAIFLDIN 64 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH--HCCCSEEEECSS
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH--hCCCCEEEEecC
Confidence 3569999999999999999999976 888 458999999999998 578999999998
No 85
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=97.91 E-value=7.1e-06 Score=68.03 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=49.9
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCC-CEEEEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCS-YEVTAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~G-yeV~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
...+||||||++..+..+..+|+..| |.|..+.++.+++..+.. . ..|||||+|+.
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~-~~~~~dlvi~D~~ 76 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD-GLDAFDILMIDGA 76 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH-HHTTCSEEEEECT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh-cCCCCCEEEEeCC
Confidence 34699999999999999999999998 999999999988887762 3 78999999998
No 86
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=97.91 E-value=2.4e-05 Score=65.41 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=49.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CC-EEEEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SY-EVTAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-Gy-eV~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
+++||||||++..+..+..+|+.. || .|..+.++.+|+..+. . ..||+||+|+.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~--~~~~~dlvi~d~~ 59 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLE--ADNTVDLILLDVN 59 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH--TTCCCSEEEECC-
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHh--ccCCCCEEEEeCC
Confidence 468999999999999999999987 88 6889999999999999 6 78999999998
No 87
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=97.89 E-value=3e-05 Score=63.51 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=47.7
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEE
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLII 123 (399)
...+||||||++..+..+..+|+..||.|..+.++.+|+..+. ...||+||
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvi 67 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD--IRNYDLVM 67 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH--HSCCSEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH--cCCCCEEE
Confidence 4569999999999999999999999999999999999999998 57899999
No 88
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=97.88 E-value=1e-05 Score=65.53 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=49.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+||||||++..+..+..+|+..++.+..+.++.+++..+. .. ||+||+|+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~-~dlvi~D~~ 55 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL--NK-QDIIILDLM 55 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC--CT-TEEEEEECC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc--cC-CCEEEEeCC
Confidence 469999999999999999999988889999999999999887 56 999999998
No 89
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=97.87 E-value=2.2e-05 Score=67.22 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=48.5
Q ss_pred CCCcEEEEEeCChhhHHHHHHHHHcCC-CE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 70 TRSLKVLLVENDDSTRHVVSALLRNCS-YE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 70 ~~~~rVLLVEDD~~~reiL~~lLe~~G-ye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+++||||||++..+..+..+|+..| +. +..+.++.+|++.+. ...||+||+|+.
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--~~~~dlvilD~~ 80 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI--ELKPDVITMDIE 80 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH--HHCCSEEEECSS
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc--cCCCCEEEEeCC
Confidence 345799999999999999999999875 44 457999999999998 568999999998
No 90
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=97.87 E-value=2.1e-05 Score=65.41 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=48.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHHc--CCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRN--CSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~--~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++..+..+..+|.. .||.+. .+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~--~~~~dlvllD~~ 58 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL--KHPPNVLLTDVR 58 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT--TSCCSEEEEESC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh--cCCCCEEEEeCC
Confidence 46899999999999999999973 688877 8999999999998 678999999998
No 91
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=97.84 E-value=3.3e-05 Score=72.21 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=50.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++.++..+..+|+..||.|..+.++.+|++.+.. ...||+||+|+.
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~-~~~~dlvllD~~ 178 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ-HPAIRLVLVDYY 178 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-CTTEEEEEECSC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-CCCCCEEEEcCC
Confidence 4699999999999999999999999999999999999999983 234899999998
No 92
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=97.83 E-value=2.3e-05 Score=69.57 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=49.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCEE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYEV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-GyeV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+.. +|.+ ..+.++.+|++.+. ...||+||+|+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~--~~~~dlvllD~~ 60 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE--SLDPDLILLDLN 60 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH--HHCCSEEEEETT
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 469999999999999999999987 4887 68999999999998 568999999998
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.82 E-value=2.5e-05 Score=77.60 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=50.1
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--~~~~DlvllDi~ 53 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK--ELFFPVIVLDVW 53 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HBCCSEEEEESE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 7999999999999999999999999999999999999998 678999999998
No 94
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=97.82 E-value=2.5e-05 Score=65.26 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=49.3
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCE--EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYE--VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~Gye--V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+||||||++..+..+..+|+..|+. +..+.++.+|++.+. ...||+||+|+.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--~~~~dlii~d~~ 70 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK--AHLPDVALLDYR 70 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH--HHCCSEEEEETT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 3469999999999999999999998854 558999999999998 568999999998
No 95
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=97.78 E-value=9.5e-06 Score=64.56 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=49.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~ 56 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA--SKTPDVLLSDIR 56 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS--SCCCSCEEECSC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--cCCCCEEEEeee
Confidence 47999999999999999999999999999999999999998 678999999998
No 96
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=97.77 E-value=4.4e-05 Score=62.81 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=48.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++..+..+..+|+.. |.|..+.++.+|+..+. ...||+||+|+.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~ 53 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE--EEWVQVIICDQR 53 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH--HSCEEEEEEESC
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh--cCCCCEEEEeCC
Confidence 37999999999999999999875 99999999999999998 568999999998
No 97
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=97.74 E-value=3.9e-05 Score=69.33 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=48.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCC-CEE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCS-YEV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~G-yeV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+..| |.+ ..+.++.+|++.+. ...||+||+|+.
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~--~~~~dlvllD~~ 56 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP--AARPDVAVLDVR 56 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH--HHCCSEEEECSE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh--hcCCCEEEEeCC
Confidence 3589999999999999999999886 884 57999999999998 567999999998
No 98
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=97.73 E-value=4.5e-05 Score=75.66 Aligned_cols=54 Identities=28% Similarity=0.428 Sum_probs=49.9
Q ss_pred CcEEEEEeCChhhHHHHHHHHHc-CCCEEEEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRN-CSYEVTAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~-~GyeV~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+. .||.|..+.++.+|++.+. . ..||+||+|+.
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~--~~~~~DlvllDi~ 58 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILE--SCGHVDIAICDLQ 58 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHH--HHSCEEEEEECSS
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHh--hCCCCCEEEEeCC
Confidence 46999999999999999999998 6889999999999999998 5 58999999999
No 99
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=97.68 E-value=4.8e-05 Score=75.81 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=50.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...|||||+|+.
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~--~~~~dlvllD~~ 54 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA--RDLPDIILLDVM 54 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HHCCSEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEEcCC
Confidence 48999999999999999999999999999999999999998 568999999998
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.65 E-value=5.5e-05 Score=75.41 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=50.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
++||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--~~~~DlvllD~~ 53 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS--EKHFNVVLLDLL 53 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH--HSCCSEEEEESB
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--hCCCCEEEEeCC
Confidence 37999999999999999999999999999999999999998 678999999998
No 101
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=97.43 E-value=0.00014 Score=64.74 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|+++||||||++.++..+..+|+..| .|..+.++.+|++.+ ..||+||+|+.
T Consensus 1 Mm~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~ 52 (220)
T 1p2f_A 1 MMWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVM 52 (220)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESB
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCC
Confidence 35699999999999999999999988 899999999998876 37999999998
No 102
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=97.43 E-value=0.00018 Score=64.09 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=46.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVL 123 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLII 123 (399)
++||||||++.++..+..+|+..||.|..+.++.+|+..+. ...||+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvi 49 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD--IRNYDLVM 49 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT--TSCCSEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh--cCCCCEEE
Confidence 37999999999999999999999999999999999999998 67899999
No 103
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=97.40 E-value=8.3e-05 Score=71.27 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=49.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHH-cCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLR-NCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe-~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++.++..+..+|. ..||.|..+.++.+|++.+. ...||+||+|+.
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~--~~~~dlvl~D~~ 72 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN--QIKPTVILQDLV 72 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH--HHCCSEEEEESB
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH--hCCCCEEEEeCC
Confidence 3579999999999999999997 46999999999999999998 568999999998
No 104
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=97.39 E-value=0.00021 Score=70.53 Aligned_cols=54 Identities=17% Similarity=0.374 Sum_probs=49.5
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcC-CCE-EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNC-SYE-VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~-Gye-V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++||||||++.++..+..+|+.. ||+ +..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~--~~~pDlVllDi~ 58 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--KFNPDVLTLDVE 58 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH--HHCCSEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh--ccCCCEEEEECC
Confidence 469999999999999999999986 898 568999999999998 568999999998
No 105
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=97.30 E-value=0.00031 Score=76.20 Aligned_cols=52 Identities=23% Similarity=0.260 Sum_probs=49.2
Q ss_pred EEEEEeCCh-hh-------HHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCC-CccEEEEcCC
Q 039733 74 KVLLVENDD-ST-------RHVVSALLRNCSYEVTAVANSLHAWKILEDLTN-HIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~-~~-------reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~-~pDLIIlDl~ 127 (399)
+||||||+. .+ +..|...|+..||+|..+.++.+|+..+. .. .||+||+|++
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~--~~~~~d~vilDi~ 62 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILS--SNEAIDCLMFSYQ 62 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT--TTCCCSEEEEECC
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--cCCCCcEEEEeCC
Confidence 899999999 89 99999999999999999999999999998 55 4999999999
No 106
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=96.96 E-value=0.00025 Score=63.72 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=44.8
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHc-CCCEEEE-ECCHHHHHHH-HHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRN-CSYEVTA-VANSLHAWKI-LEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~-~GyeV~~-A~dg~eAle~-L~~~~~~pDLIIlDl~ 127 (399)
.+++||||||++.++..+..+|+. .||.+.. +.++.+++.. +. ...||+||+|+.
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~--~~~~dlvllD~~ 63 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPE--SRSIQMLVIDYS 63 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSG--GGGCCEEEEEGG
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhh--ccCCCEEEEeCC
Confidence 356999999999999999999994 6898754 4566666653 55 568999999998
No 107
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=96.92 E-value=0.00036 Score=61.03 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=44.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.++||||||++..+..+..+|+..||.|..+.++.+|+ . ..||+||+|+.
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al---~---~~~dlvl~D~~ 61 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF---D---VPVDVVFTSIF 61 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC---S---SCCSEEEEECC
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC---C---CCCCEEEEeCC
Confidence 45899999999999999999999999999888877655 2 47999999998
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=96.81 E-value=0.00027 Score=65.95 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=42.4
Q ss_pred cEEEEEeCChhhHHHHHHHHHc-CCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRN-CSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~-~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+||||||++.++..+..+|.. .||.+..+ ++.+++..+. ...||+||+|+.
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~--~~~~dlvllD~~ 57 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQ--GDEYVVALVDLT 57 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCC--TTTEEEEEEESC
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhh--cCCCcEEEEeCC
Confidence 5899999999999999999976 47887654 5556666555 568999999999
No 109
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=94.47 E-value=0.035 Score=51.16 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=41.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||||||++.++..+..+|+.+|++|..+.+ .. ...+|+||+|+.
T Consensus 11 ~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~~--~~~~~~ii~d~~ 57 (254)
T 2ayx_A 11 GKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------QE--PTPEDVLITDEV 57 (254)
T ss_dssp TEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------CC--CCTTCEEEEESS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------CC--CCcCcEEEEcCC
Confidence 459999999999999999999999999988764 12 467999999998
No 110
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=80.51 E-value=0.82 Score=43.55 Aligned_cols=50 Identities=14% Similarity=0.309 Sum_probs=36.7
Q ss_pred CcEEEEEeCC--hhhHHHHHHHHHcCCCEEEEECCHHH--HHHHHHhcCCCccEEEEc
Q 039733 72 SLKVLLVEND--DSTRHVVSALLRNCSYEVTAVANSLH--AWKILEDLTNHIDIVLTE 125 (399)
Q Consensus 72 ~~rVLLVEDD--~~~reiL~~lLe~~GyeV~~A~dg~e--Ale~L~~~~~~pDLIIlD 125 (399)
|.+||||+++ +.....|..+|+..||+|.......- -.+.|. .||+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 4589999988 66788899999999999887654321 123444 79999886
No 111
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=76.05 E-value=4.3 Score=39.60 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=48.5
Q ss_pred CCCCCcEEEEEeCChhhHHHHHHHHHc---CCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 68 LPTRSLKVLLVENDDSTRHVVSALLRN---CSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 68 lp~~~~rVLLVEDD~~~reiL~~lLe~---~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
...+++++.|+|.|......|..+|.. ..|++..+++.+.+.+.++ ...+|++|+|-.
T Consensus 17 ~~~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~--~~~~dilli~e~ 77 (373)
T 3fkq_A 17 FQGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVK--EYRIDVLIAEED 77 (373)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHH--HHTCSEEEEETT
T ss_pred ccCceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHh--cCCCCEEEEcch
Confidence 345678999999999999999999864 3688999999999999998 568999999866
No 112
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=58.01 E-value=25 Score=34.38 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=41.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||+|+|+...+..+...|.. .+.+....++.+++.. . ...||+|++|+.
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~--~~~~dlil~D~~ 203 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-A--GGPVDLVIVNAA 203 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-H--HSSCSEEEEETT
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-c--cCCCCEEEEecC
Confidence 45899999999998888888865 4677778888888643 4 357999999987
No 113
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=55.78 E-value=6.3 Score=34.79 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=34.5
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|+|||....+...+..+|+..|+.+..+......++.+. ...+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIE--RIDPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHH--HHCCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHh--hCCCCEEEE
Confidence 999998888888888999999998776665322233333 225788877
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=55.66 E-value=22 Score=30.84 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=42.3
Q ss_pred CcEEEEE----eCChhhHHHHHHHHHcCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLV----ENDDSTRHVVSALLRNCSYEVTA---VANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLV----EDD~~~reiL~~lLe~~GyeV~~---A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|||. |-++.=..++..+|+..||+|+. ....++.++.+. ...+|+|.+-..
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~--~~~~diV~lS~~ 78 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV--QEDVDVIGVSIL 78 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH--HTTCSEEEEEES
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--hcCCCEEEEEee
Confidence 4578777 66677778889999999999884 356788888888 678999987554
No 115
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=54.80 E-value=12 Score=40.47 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 86 HVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 86 eiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..|...|++.||+|..+.+..+|+..+.. ...+++||+|+.
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~-~~~i~avIld~d 60 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWD 60 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHH-CTTEEEEEEEHH
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHh-CCCceEEEEecc
Confidence 44558888999999999999999999984 456999999987
No 116
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=52.73 E-value=17 Score=32.08 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=34.4
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
.+|+|||--.-+...+...|++.|+++..+.+.++ +. .+|.||+
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~----l~----~~D~lil 46 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQV----VL----AADKLFL 46 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH----HH----HCSEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH----Hh----CCCEEEE
Confidence 47999997777778888999999999988887643 33 3577777
No 117
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=52.07 E-value=35 Score=28.25 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=30.7
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHH
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILE 113 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~ 113 (399)
+|+-|.|..-.+.+..-++..||+|.-+.+.++|+.+++
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivr 118 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVR 118 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHH
Confidence 455566666677778888888999999999999988775
No 118
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=51.63 E-value=25 Score=30.69 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=31.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCH---HHHHHHHH
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANS---LHAWKILE 113 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg---~eAle~L~ 113 (399)
++|+|||....+-..+..+|+..|+++..+... .+..+.+.
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~ 44 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLA 44 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhh
Confidence 379999988888888899999999987776654 44434443
No 119
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=45.91 E-value=15 Score=35.45 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=42.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
-++++||-++.....|+..++...--.+...|+..++..+......+|+||+|-=
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 5899999999999999888876432334557888888877522236999999974
No 120
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=43.83 E-value=2.8 Score=36.57 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=24.3
Q ss_pred CEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 97 YEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 97 yeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.|..+.++.+|++.+. ...||+||+|+.
T Consensus 6 ~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~ 34 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK--ELKPDIVTMDIT 34 (237)
T ss_dssp EEEECCCSSSTTHHHHH--HHCCSCEEEECC
T ss_pred EEEEECCCHHHHHHHHH--hcCCCEEEEeCC
Confidence 45556889999999998 567999999998
No 121
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=43.08 E-value=55 Score=24.89 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=32.9
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCC-CEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCS-YEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~G-yeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+.+|+|+.- -.+...+...|...| ++|..+.-..+.++.+. ...+..+..|+.
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--~~~~~~~~~d~~ 58 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--RMGVATKQVDAK 58 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--TTTCEEEECCTT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--hCCCcEEEecCC
Confidence 457888888 666677777777778 77766554444444444 334455555554
No 122
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=41.74 E-value=26 Score=30.42 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=35.0
Q ss_pred EEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 75 VLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 75 VLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
|+|||-...+...+..+|+..|+.+..+.... .++.+. ...+|.||+
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~--~~~~dglil 49 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIK--AMNPKGIIF 49 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHH--HTCCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhc--ccCCCEEEE
Confidence 99999999888899999999999877765433 233333 246888876
No 123
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=41.59 E-value=34 Score=29.05 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=32.6
Q ss_pred CcEEEEEeCChhhHHHHHHHHH--cCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLR--NCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe--~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||+||-|+... +..++. ..++.+..+.. ....+.+......||+||+|.-
T Consensus 30 g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~ 84 (206)
T 4dzz_A 30 GYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA 84 (206)
T ss_dssp TCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC
T ss_pred CCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC
Confidence 45899999886533 333443 33566766554 3333344333457999999987
No 124
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=39.01 E-value=56 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=28.6
Q ss_pred hHHHHHHHHHcCCCEEEEECCHH-----------------HHHHHHHhcCCCccEEEEcCC
Q 039733 84 TRHVVSALLRNCSYEVTAVANSL-----------------HAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 84 ~reiL~~lLe~~GyeV~~A~dg~-----------------eAle~L~~~~~~pDLIIlDl~ 127 (399)
....+...|.+.||+|..+.... ....++. ...||+|++-..
T Consensus 35 ~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~Dvi~~~~~ 93 (342)
T 2iuy_A 35 VVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLR--TADVDVVHDHSG 93 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHH--HCCCSEEEECSS
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHH--hcCCCEEEECCc
Confidence 33446667777899988775432 4566666 568999988654
No 125
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=38.33 E-value=75 Score=30.72 Aligned_cols=55 Identities=7% Similarity=0.112 Sum_probs=49.3
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTES 126 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl 126 (399)
.+.|.++-.++.+.+.+..+|...-|.+..+.+..+.++.++.+.+.+|++|+..
T Consensus 9 ~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~ 63 (289)
T 1r8j_A 9 QIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVA 63 (289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEET
T ss_pred ceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEe
Confidence 4678889999999999999998888999999999999999987677899999987
No 126
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=37.34 E-value=31 Score=30.22 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=38.3
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCc-cEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHI-DIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~p-DLIIlDl~ 127 (399)
..++|||..-.--+...+...|...||+|..+.-..+.+..+. ...+ .++..|+.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~--~~~~~~~~~~Dl~ 75 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR--ERGASDIVVANLE 75 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH--HTTCSEEEECCTT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHH--hCCCceEEEcccH
Confidence 3458999999888888888888888999876543333344444 2356 67777774
No 127
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=36.33 E-value=1.4e+02 Score=25.60 Aligned_cols=56 Identities=5% Similarity=0.132 Sum_probs=41.8
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhcC--CCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDLT--NHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~~--~~pDLIIlDl~ 127 (399)
..+|+.||-++......+..++..|+. +. ...+..+.+..+.... ..||+|++|..
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 358999999999999999999887753 43 4567777766655100 58999998865
No 128
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=36.14 E-value=1.6e+02 Score=25.20 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=41.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EE-EEECCHHHHHHHHHhcC-CCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EV-TAVANSLHAWKILEDLT-NHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV-~~A~dg~eAle~L~~~~-~~pDLIIlDl~ 127 (399)
.+|..||-++......+..+...|+ .+ ....+..+.+..+.... ..||+|++|..
T Consensus 84 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~ 142 (223)
T 3duw_A 84 GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD 142 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC
Confidence 4899999999999999999987776 23 34577777766654211 46999999875
No 129
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=35.39 E-value=52 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=36.8
Q ss_pred EEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 74 KVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 74 rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+|||..-.-.+...+...|...|++|..+.-....+..+. ...+.++..|+.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~~D~~ 53 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--GATVATLVKEPL 53 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--CTTSEEEECCGG
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--CCCceEEecccc
Confidence 6889888888888888888778999776543334444444 356777777876
No 130
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=35.20 E-value=1e+02 Score=26.65 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=40.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EEE-EECCHHHHHHHHHhcC--CCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EVT-AVANSLHAWKILEDLT--NHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV~-~A~dg~eAle~L~~~~--~~pDLIIlDl~ 127 (399)
.+|+.||-++......+..++..|+ .+. ...+..+.+..+.... ..||+|++|..
T Consensus 95 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 95 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 5899999999999999999887765 333 4567777665554111 57999999864
No 131
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=34.92 E-value=71 Score=31.74 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=39.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCC---C------EE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCS---Y------EV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~G---y------eV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||-|+.+.+..+..|.... + ++ +...|+.+.++.+......||+||+|..
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~ 276 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLT 276 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCC
Confidence 589999999999999988875321 1 12 3467888877765211568999999975
No 132
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=33.82 E-value=40 Score=30.08 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=40.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE---EEE-ECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE---VTA-VANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye---V~~-A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|..||-++......+..++..|+. +.. ..+..+.+..+. ...||+||+|..
T Consensus 82 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~ 138 (221)
T 3dr5_A 82 TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVS 138 (221)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCc
Confidence 48999999999999999999988764 543 455655544442 368999999865
No 133
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=33.74 E-value=1.1e+02 Score=27.17 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=41.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhc---CCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDL---TNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~---~~~pDLIIlDl~ 127 (399)
.+|+.||-++......+..++..|+. +. ...+..+.+..+... ...||+||+|..
T Consensus 96 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 96 GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 58999999999999999999888873 43 456777776655311 257999999864
No 134
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.23 E-value=1.3e+02 Score=24.89 Aligned_cols=42 Identities=12% Similarity=0.312 Sum_probs=33.9
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHh
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILED 114 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~ 114 (399)
+-|++...|..+..-+..++++.||.|.++.+.++.-..+++
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 345666778888888999999999999999999887766653
No 135
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=33.23 E-value=23 Score=32.26 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=35.7
Q ss_pred CcEEEEEeCChh--------hHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDS--------TRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~--------~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+++|+|+..... ....+...|++.||+|..+......+..+. ...+|+|+.-+.
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~--~~~~d~v~~~~~ 63 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLK--SMGFQKVFIALH 63 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTT--TTTEEEEEECCC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhh--ccCCCEEEEcCC
Confidence 358888887552 334567778889999887764432233344 457899887664
No 136
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=32.55 E-value=42 Score=29.33 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=30.9
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
+++|+|++..-.....+..+|+..|+++..+.+.. . -..+|.||+
T Consensus 2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~------~--l~~~d~lil 46 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPK------A--HEEADLLVL 46 (200)
T ss_dssp -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTT------S--CSSCSEEEE
T ss_pred ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecChH------H--cccCCEEEE
Confidence 35899996543445567788888999988876531 1 236888887
No 137
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.37 E-value=54 Score=27.39 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHHcCCCEEE---EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 81 DDSTRHVVSALLRNCSYEVT---AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 81 D~~~reiL~~lLe~~GyeV~---~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
+..=..++..+|+..||+|+ .....++.++.+. ...+|+|.+-..
T Consensus 16 HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~--~~~~d~v~lS~~ 63 (137)
T 1ccw_A 16 HAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI--ETKADAILVSSL 63 (137)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH--HHTCSEEEEEEC
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--hcCCCEEEEEec
Confidence 34455667888999999987 4567888889888 578999987554
No 138
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=31.25 E-value=1.4e+02 Score=26.97 Aligned_cols=55 Identities=7% Similarity=0.161 Sum_probs=41.4
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EEE-EECCHHHHHHHHHhc---CCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EVT-AVANSLHAWKILEDL---TNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV~-~A~dg~eAle~L~~~---~~~pDLIIlDl~ 127 (399)
.+|+.||-++......+..++..|+ .+. ...+..+.+..+... ...||+||+|..
T Consensus 105 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~ 165 (247)
T 1sui_A 105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165 (247)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc
Confidence 4899999999999999999988876 343 456777766655210 257999999864
No 139
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=30.99 E-value=89 Score=31.29 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=40.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC--C----CE---E-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC--S----YE---V-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~--G----ye---V-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|-+||=|+.+.++.+..|... + .+ + +.+.|+.+-++........||+||+|+.
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~ 293 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLT 293 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCC
Confidence 48999999999999988887431 1 11 2 3568898888765422568999999987
No 140
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=30.92 E-value=1.4e+02 Score=26.32 Aligned_cols=55 Identities=7% Similarity=0.253 Sum_probs=40.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EEE-EECCHHHHHHHHHhcC--CCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EVT-AVANSLHAWKILEDLT--NHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV~-~A~dg~eAle~L~~~~--~~pDLIIlDl~ 127 (399)
.+|+.||-++......+..++..|+ .+. ...+..+.+..+.... ..||+||+|..
T Consensus 98 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 98 GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 4899999999999999888887665 233 4567777666654111 57999999864
No 141
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=30.86 E-value=37 Score=30.50 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=35.1
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
|+++|||..- -.+...|...|...||+|..+.-.......+. ...+.++..|+.
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~~D~~ 57 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR--ASGAEPLLWPGE 57 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH--HTTEEEEESSSS
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh--hCCCeEEEeccc
Confidence 3568999997 77877888888777999876543333334444 235566666653
No 142
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=30.57 E-value=93 Score=27.96 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=38.0
Q ss_pred CcEEEEEe------CChhhHHHHHHHHHcCCCEEEEE----CCHHHHHHHHHhcCCCccEEEE
Q 039733 72 SLKVLLVE------NDDSTRHVVSALLRNCSYEVTAV----ANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 72 ~~rVLLVE------DD~~~reiL~~lLe~~GyeV~~A----~dg~eAle~L~~~~~~pDLIIl 124 (399)
..+|++|. +.......+...|++.|+++... .+..+..+.+. ..|.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~----~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR----KNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH----HSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH----hCCEEEE
Confidence 36899997 44457788899999999998887 47777777777 3578876
No 143
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=29.56 E-value=74 Score=27.70 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=39.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhc--CCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDL--TNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~--~~~pDLIIlDl~ 127 (399)
.+|+.||-++......+..++..|+. |. ...+..+.+..+... ...||+||+|..
T Consensus 84 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~ 143 (221)
T 3u81_A 84 ARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHW 143 (221)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSC
T ss_pred CEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCC
Confidence 48999999999999999988877752 43 456766655544300 057999999865
No 144
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=29.52 E-value=75 Score=27.41 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHcCCCEEE---EECCHHHHHH-HHHh--cCCCccEEEEc
Q 039733 82 DSTRHVVSALLRNCSYEVT---AVANSLHAWK-ILED--LTNHIDIVLTE 125 (399)
Q Consensus 82 ~~~reiL~~lLe~~GyeV~---~A~dg~eAle-~L~~--~~~~pDLIIlD 125 (399)
+.....|..+|+.+||+|. ++.|..+.+. .+.. ....+|+||+-
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 4566789999999999754 4555444332 2221 13568999874
No 145
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=28.33 E-value=35 Score=31.64 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCCEEEEECCHHHH-------HHHHHhcCCCccEEEEcCC
Q 039733 86 HVVSALLRNCSYEVTAVANSLHA-------WKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 86 eiL~~lLe~~GyeV~~A~dg~eA-------le~L~~~~~~pDLIIlDl~ 127 (399)
..|..+|+..+++|..... .++ ++.|. .||+||++=.
T Consensus 43 ~~l~~aL~~~~~~v~~~~~-~~~~~~fp~~~~~L~----~yDvIIl~~~ 86 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPA-HTVQIAFPESIDELN----RYDVIVISDI 86 (256)
T ss_dssp HHHHHHHHHTTCEEEEECH-HHHHHCCCCSHHHHH----TCSEEEEESC
T ss_pred HHHHHHHHhcCceEEEEec-ccchhhCCcChhHHh----cCCEEEEeCC
Confidence 3456667767999887742 211 13444 6899887643
No 146
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=27.96 E-value=80 Score=25.35 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=32.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|+|+.--. +...+...|...|++|..+..-.+.++.+. ...+.++..|..
T Consensus 7 ~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~--~~~~~~~~gd~~ 58 (141)
T 3llv_A 7 YEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLE--DEGFDAVIADPT 58 (141)
T ss_dssp CSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHH--HTTCEEEECCTT
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHH--HCCCcEEECCCC
Confidence 4688887744 566666677777888777665555556555 234555555554
No 147
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=27.94 E-value=1.6e+02 Score=24.24 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=38.2
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+|.++.... ...+|+..|+.+..+.+..+++.++. ...+|+++++..
T Consensus 112 g~~i~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~--~g~~D~~~~~~~ 160 (228)
T 2pyy_A 112 GKVVATTAGST-----AATYLREHHISVLEVPKIEEAYKALQ--TKKADAVVFDAP 160 (228)
T ss_dssp TCEEEEETTSH-----HHHHHHHTTCEEEEESSHHHHHHHHH--TTSSSEEEEEHH
T ss_pred CCeEEEEcCcH-----HHHHHHHcCCceEecCCHHHHHHHHH--cCCCCEEEecHH
Confidence 35777766544 23455667889999999999999999 789999999876
No 148
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=27.92 E-value=98 Score=23.76 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHH
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWK 110 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle 110 (399)
..|+|+............+|+..||.|.....|-.+|.
T Consensus 57 ~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~W~ 94 (103)
T 3eme_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWG 94 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHHHC
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHHHH
Confidence 47888888776677788889999999999999988884
No 149
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=27.48 E-value=18 Score=34.44 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=37.1
Q ss_pred CCcEEEEEeCC-----hhhHHHHHHHHHcCC-CEEEEECCHH-----HHHHHHHhcCCCccEEEEcCC
Q 039733 71 RSLKVLLVEND-----DSTRHVVSALLRNCS-YEVTAVANSL-----HAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 71 ~~~rVLLVEDD-----~~~reiL~~lLe~~G-yeV~~A~dg~-----eAle~L~~~~~~pDLIIlDl~ 127 (399)
..++||||.-. +....+|..+|+..| |+|.++.+.. +.+. .. -..+|+||++..
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~--~~-L~~~D~vV~~~~ 67 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV--LD-FSPYQLVVLDYN 67 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC--CC-CTTCSEEEECCC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh--hh-hhcCCEEEEeCC
Confidence 35689999752 556678999999888 9998886531 2221 11 246999998665
No 150
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=27.13 E-value=1.4e+02 Score=25.16 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=39.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.++... .....+...+...++.+..+.+..+++.++. ...+|+++++..
T Consensus 112 ~~v~~~~g~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~G~vDa~~~~~~ 163 (239)
T 1lst_A 112 KHVGVLQGS-TQEAYANDNWRTKGVDVVAYANQDLIYSDLT--AGRLDAALQDEV 163 (239)
T ss_dssp CEEEEETTS-HHHHHHHHHTGGGTCEEEEESSHHHHHHHHH--TTSCSEEEEEHH
T ss_pred CEEEEEcCc-cHHHHHHHhcccCCCeEEEcCCHHHHHHHHH--cCCCCEEEeCcH
Confidence 466665443 3445556666555789999999999999999 789999998864
No 151
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=27.06 E-value=1.1e+02 Score=23.29 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=31.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHH
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWK 110 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle 110 (399)
..|+|+............+|+..||.|.....|-.+|.
T Consensus 57 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~W~ 94 (100)
T 3foj_A 57 ETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDEFG 94 (100)
T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHHHC
T ss_pred CcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHHHH
Confidence 47888888777777788889999999989999988874
No 152
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=26.86 E-value=52 Score=29.68 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=33.7
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
..+|+|||-...+...+...|+..|+.+..+..... .+.+. ...+|.||+
T Consensus 24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~-~~~l~--~~~~dglil 73 (218)
T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETP-AFAIK--EQGFRAIII 73 (218)
T ss_dssp TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCC-HHHHH--HHTCSEEEE
T ss_pred CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hHHHh--hcCCCEEEE
Confidence 358999998888878888899999988775543211 12222 135787766
No 153
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.50 E-value=1.2e+02 Score=26.70 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=40.4
Q ss_pred CcEEEEE----eCChhhHHHHHHHHHcCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLV----ENDDSTRHVVSALLRNCSYEVTAV---ANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLV----EDD~~~reiL~~lLe~~GyeV~~A---~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
..+||+. |-+..-..++..+|+..||+|... ...++.++.+. ...||+|.+-..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~--~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK--KYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH--HHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEecc
Confidence 3478887 566667778889999999998853 35677777777 568999987543
No 154
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=26.27 E-value=1.9e+02 Score=24.46 Aligned_cols=52 Identities=8% Similarity=0.163 Sum_probs=40.7
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+. ........+..++...|+ .+..+.+..+++..+. ...+|+++++..
T Consensus 149 ~~i~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~--~g~vDa~~~~~~ 202 (259)
T 2v25_A 149 ANIGVA-QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALD--AKRVDAFSVDKS 202 (259)
T ss_dssp CEEEEE-TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH--TTSSSEEEEEHH
T ss_pred CEEEEe-cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHH--cCCCcEEEecHH
Confidence 466665 555566777788887776 6778899999999999 789999999865
No 155
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=25.77 E-value=1.9e+02 Score=25.24 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=40.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhcC--------------CCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDLT--------------NHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~~--------------~~pDLIIlDl~ 127 (399)
.+|..||-++......+..++..|+. +. ...+..+.+..+.. . ..||+||++..
T Consensus 86 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~-~~~~~~~~~~f~~~~~~fD~I~~~~~ 156 (239)
T 2hnk_A 86 GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLID-SKSAPSWASDFAFGPSSIDLFFLDAD 156 (239)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH-CSSCCGGGTTTCCSTTCEEEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHh-hcccccccccccCCCCCcCEEEEeCC
Confidence 48999999999999999999887762 33 45677766654431 1 57999999853
No 156
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=25.75 E-value=12 Score=33.71 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.7
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEEEEC
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVTAVA 103 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~ 103 (399)
.+++|||+|....+...+..+|+..|+.+..+.
T Consensus 12 ~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~ 44 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWTHREWRVLRELGVDTKIVP 44 (212)
T ss_dssp CCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEE
T ss_pred ccceEEEEeCCCccHHHHHHHHHHCCCEEEEEe
Confidence 356999999999999999999999998765554
No 157
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=25.69 E-value=2.4e+02 Score=23.05 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=39.1
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC--EE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY--EV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy--eV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|+.||-++...+..+..+...++ .+ ....+..+.+..+......||+|+++..
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~ 125 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP 125 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC
Confidence 4899999999999988888876664 23 3456776655433211357999999865
No 158
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=25.63 E-value=1.3e+02 Score=25.32 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=39.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC-EE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY-EV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy-eV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|+.||-++......+..++..+. .+ ....+..+.+..+. ...||+|+++..
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p 122 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPP 122 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCC
Confidence 4799999999999998888877665 33 34566666554443 468999999866
No 159
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=25.60 E-value=68 Score=31.10 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=37.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcC-CCEE-EEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNC-SYEV-TAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~-GyeV-~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||-++.+.+..+..|... .-++ +...++.+.+..+. ...||+||+|+.
T Consensus 114 ~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDvIi~D~~ 168 (317)
T 3gjy_A 114 SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT--PASRDVIIRDVF 168 (317)
T ss_dssp CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC--TTCEEEEEECCS
T ss_pred cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc--CCCCCEEEECCC
Confidence 48999999999999988887543 1223 24577776554332 357999999986
No 160
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=25.47 E-value=1.1e+02 Score=28.46 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=9.7
Q ss_pred CCCccEEEEc-CC
Q 039733 116 TNHIDIVLTE-SS 127 (399)
Q Consensus 116 ~~~pDLIIlD-l~ 127 (399)
...||+||.| ..
T Consensus 100 ~~~pD~Vi~d~~~ 112 (402)
T 3ia7_A 100 DNPPDLVVYDVFP 112 (402)
T ss_dssp TCCCSEEEEESTT
T ss_pred ccCCCEEEECchH
Confidence 5689999999 44
No 161
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=25.31 E-value=1.1e+02 Score=24.04 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=33.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHH
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILE 113 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~ 113 (399)
..|+|+............+|+..||.|.....|-.+|....
T Consensus 56 ~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W~~~~ 96 (108)
T 3gk5_A 56 KKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIEEG 96 (108)
T ss_dssp SCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHHHHTT
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHHHHcC
Confidence 36888887776677788889999999999999999987643
No 162
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=24.72 E-value=1.2e+02 Score=27.30 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=38.8
Q ss_pred cEEEEE----eCChhhHHHHHHHHHcCCCEEEEE---CCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLV----ENDDSTRHVVSALLRNCSYEVTAV---ANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLV----EDD~~~reiL~~lLe~~GyeV~~A---~dg~eAle~L~~~~~~pDLIIl 124 (399)
.+||+. |-+..=..++..+|+..||+|+.. ...++.++.+. ...||+|.+
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~--~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAA--KHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHH--HTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHH--HcCCCEEEE
Confidence 477776 556666777888999999998753 36777888888 678999987
No 163
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=24.09 E-value=55 Score=28.51 Aligned_cols=45 Identities=11% Similarity=0.080 Sum_probs=32.1
Q ss_pred CcEEEEEeCChhhH-HHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 72 SLKVLLVENDDSTR-HVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 72 ~~rVLLVEDD~~~r-eiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
+++|+|++.+.... ..+..+|+..|+++..+.... . -..+|.||+
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~------~--~~~~d~lil 47 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD------K--LDDYELIIL 47 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC------C--CSSCSEEEE
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC------C--cccCCEEEE
Confidence 46899988776653 456788888999988776431 1 346888887
No 164
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=23.83 E-value=1.2e+02 Score=27.22 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=39.8
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|+.||-++......+..++..|+. |. ...+..+.+..+.. ...||+|++|..
T Consensus 89 ~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~ 145 (248)
T 3tfw_A 89 GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDAD 145 (248)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCc
Confidence 48999999999999999999887763 43 45666665544321 237999999865
No 165
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.92 E-value=2.8e+02 Score=24.43 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=41.1
Q ss_pred CCcEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEc
Q 039733 71 RSLKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTE 125 (399)
Q Consensus 71 ~~~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlD 125 (399)
+..+|+++-..+.++..+..++...++++. ...+..+++.........+|+||.-
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISR 58 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISR 58 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEE
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEEC
Confidence 345899999999999999998887666654 4567888888876433468888753
No 166
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=22.11 E-value=70 Score=28.97 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=23.0
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSY 97 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gy 97 (399)
-+|.-||-++...+..+..|++.|+
T Consensus 52 g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 52 KHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4899999999999999999999886
No 167
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=21.95 E-value=70 Score=27.68 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=29.3
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLT 124 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIl 124 (399)
++|+|++-...+...+ .+|++.|+++..+....+ + ..+|.||+
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~~~----l----~~~d~iil 44 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRPEQ----L----NEVDGLIL 44 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSGGG----G----GGCSEEEE
T ss_pred cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCChHH----H----hhCCEEEE
Confidence 5899998644455554 778888999888876421 2 24787776
No 168
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=21.54 E-value=1.1e+02 Score=24.53 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=32.3
Q ss_pred cEEEEEeCChhh--HHHHHHHHHcCCCEEEEECCHHHHHHHHH
Q 039733 73 LKVLLVENDDST--RHVVSALLRNCSYEVTAVANSLHAWKILE 113 (399)
Q Consensus 73 ~rVLLVEDD~~~--reiL~~lLe~~GyeV~~A~dg~eAle~L~ 113 (399)
..|+|+...... ...+..+|+..||.|.....|..+|....
T Consensus 72 ~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~W~~~~ 114 (124)
T 3flh_A 72 KTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQ 114 (124)
T ss_dssp SEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHHHHHTT
T ss_pred CeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHHHHHcC
Confidence 468888777655 56778889999999888899999987643
No 169
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=21.39 E-value=1.3e+02 Score=23.28 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=32.6
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE-EEEECCHHHHHHHH
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE-VTAVANSLHAWKIL 112 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye-V~~A~dg~eAle~L 112 (399)
..|+|+............+|+..||. |.....|..+|...
T Consensus 53 ~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~ 93 (106)
T 3hix_A 53 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAI 93 (106)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHHHHT
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHHHHC
Confidence 36888888777777788889999996 88889999988764
No 170
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=21.38 E-value=41 Score=28.50 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=38.1
Q ss_pred CcEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 72 SLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 72 ~~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+.|||==-.+++|.++...|..+|..+..... ... .+.+|++|+|--
T Consensus 7 gVt~lLdIts~Eir~IV~~~L~~~GA~~i~~de------r~~--~~eyDi~lTDnp 54 (117)
T 2kx7_A 7 DVCVMVDVTSAEIRNIVTRQLENWGATCITPDE------RLI--SQDYDIFLTDNP 54 (117)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHTEEEECCCS------SSS--CCCCSEEEEESG
T ss_pred CcEEEEEcCcHHHHHHHHHHHHhcCCeEEeccc------cCC--CCcccEEEecCc
Confidence 357777778899999999999999988876532 122 467999999976
No 171
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=20.41 E-value=1.4e+02 Score=26.49 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=40.5
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVT-AVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~-~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|.+||-++.+.+..+...+..+..+. ...+..+.+..+. ...||.|+.|..
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~FD~i~~D~~ 137 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP--DGHFDGILYDTY 137 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC--TTCEEEEEECCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccc--ccCCceEEEeee
Confidence 3788999999999999888888777655 4456655544444 567999999987
No 172
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=20.21 E-value=1.7e+02 Score=23.06 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=30.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCEEEEECCHHHHHHH
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKI 111 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~GyeV~~A~dg~eAle~ 111 (399)
..|+|+-...........+|+..||.+.....|-.+|..
T Consensus 57 ~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~~W~~ 95 (103)
T 3iwh_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGD 95 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHHHCS
T ss_pred CeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHHHHHH
Confidence 467777766666666778899999998888889888853
No 173
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=20.01 E-value=3.2e+02 Score=26.14 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=41.2
Q ss_pred cEEEEEeCChhhHHHHHHHHHcCCCE--EEEECCHHHHHHHHHhcCCCccEEEEcCC
Q 039733 73 LKVLLVENDDSTRHVVSALLRNCSYE--VTAVANSLHAWKILEDLTNHIDIVLTESS 127 (399)
Q Consensus 73 ~rVLLVEDD~~~reiL~~lLe~~Gye--V~~A~dg~eAle~L~~~~~~pDLIIlDl~ 127 (399)
.+|+.||-++.........++..|+. .....+..+.+..+......||+||+|.-
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 47999999999999998888877753 33557777766655322357999999975
Done!