BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039737
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
           Terminal Fragments Of Mdia1
 pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
           Terminal Fragments Of Mdia1
 pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
           Terminal Fragments Of Mdia1
 pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
           Terminal Fragments Of Mdia1
          Length = 467

 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 84  PDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVE--PVV----DK 137
           P+  KF D    VE+ ++ +A      EN    +D++K+ I D+E+ V+  P      DK
Sbjct: 282 PEVLKFPDELAHVEKASRVSA------ENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 335

Query: 138 FVEEET 143
           FVE+ T
Sbjct: 336 FVEKMT 341


>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
 pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
 pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
 pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
          Length = 457

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 84  PDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVE--PVV----DK 137
           P+  KF D    VE+ ++ +A      EN    +D++K+ I D+E+ V+  P      DK
Sbjct: 263 PEVLKFPDELAHVEKASRVSA------ENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 316

Query: 138 FVEEET 143
           FVE+ T
Sbjct: 317 FVEKMT 322


>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
 pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
 pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
 pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
          Length = 340

 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 84  PDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVE--PVV----DK 137
           P+  KF D    VE+ ++ +A      EN    +D++K+ I D+E+ V+  P      DK
Sbjct: 192 PEVLKFPDELAHVEKASRVSA------ENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 245

Query: 138 FVEEET 143
           FVE+ T
Sbjct: 246 FVEKMT 251


>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
           Transacylase From Clostridium Perfringens Atcc 13124
          Length = 336

 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 124 INDLEKLVEPVVDKFVE 140
           IND+EK++E  VD F+E
Sbjct: 256 INDIEKMIESGVDTFIE 272


>pdb|1MJT|A Chain A, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
           Synthase Oxygenase Protein, In Complex With Nad+ And
           Seitu
 pdb|1MJT|B Chain B, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
           Synthase Oxygenase Protein, In Complex With Nad+ And
           Seitu
          Length = 347

 Score = 25.8 bits (55), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 86  HTKFKDAALFVERVAKETAHDAQLTENFIHKVD-EVKQ 122
           H  FK+A  F+E + KE  ++ Q+    +H ++ E+K+
Sbjct: 1   HHLFKEAQAFIENMYKECHYETQIINKRLHDIELEIKE 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,088,227
Number of Sequences: 62578
Number of extensions: 81711
Number of successful extensions: 261
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)