BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039737
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8FS96|RPOC_COREF DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=rpoC PE=3 SV=1
Length = 1333
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 50 EAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVA-KETAHDAQ 108
EAEM++E+ + A+ ++A AE + ++AE+ K DA V+ A KE H +
Sbjct: 152 EAEMLLEKKDVEADAESEIAERAEKLEEDLAELEAAGAK-ADARRKVQNAAEKEMQHIRE 210
Query: 109 LTENFIHKVDEV---------KQDINDLEKLVEPVVDKF 138
E I +++E+ KQ I D EKL + +VD++
Sbjct: 211 RAEREIDRLEEIWQTFIKLAPKQMIRD-EKLYDELVDRY 248
>sp|A4QBG3|RPOC_CORGB DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
glutamicum (strain R) GN=rpoC PE=3 SV=1
Length = 1333
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 46 QIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVA-KETA 104
Q EAEM++E+ + A+ +A AE + ++AE+ K DA V+ A KE
Sbjct: 148 QTTLEAEMLLEKKDVEADAESDIAERAEKLEEDLAELEAAGAK-ADARRKVQAAADKEMQ 206
Query: 105 HDAQLTENFIHKVDEV---------KQDINDLEKLVEPVVDKF 138
H + + I ++DEV KQ I D EKL + ++D++
Sbjct: 207 HIRERAQREIDRLDEVWQTFIKLAPKQMIRD-EKLYDELIDRY 248
>sp|Q8NT25|RPOC_CORGL DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=rpoC PE=3 SV=1
Length = 1333
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 46 QIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVA-KETA 104
Q EAEM++E+ + A+ +A AE + ++AE+ K DA V+ A KE
Sbjct: 148 QTTLEAEMLLEKKDVEADAESDIAERAEKLEEDLAELEAAGAK-ADARRKVQAAADKEMQ 206
Query: 105 HDAQLTENFIHKVDEV---------KQDINDLEKLVEPVVDKF 138
H + + I ++DEV KQ I D EKL + ++D++
Sbjct: 207 HIRERAQREIDRLDEVWQTFIKLAPKQMIRD-EKLYDELIDRY 248
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 28/121 (23%)
Query: 38 KQKWEKLKQIE----------GEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHT 87
+++ E L Q+E AEM++EE ++A++ V A+ V E L +
Sbjct: 1548 RERVESLSQVEVILQHSAADIARAEMLLEEAKRASKSATDVKVTADMVK----EALEEAE 1603
Query: 88 KFKDAALFVERVAKETAHDAQLTENFIHKVDE-----------VKQDINDLEKLVEPVVD 136
K + AA E+ K+ D Q T+N + ++ Q I++LE+ VE +
Sbjct: 1604 KAQVAA---EKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKR 1660
Query: 137 K 137
K
Sbjct: 1661 K 1661
>sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=MAK5 PE=3 SV=1
Length = 763
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 28 SILSLLLPFWKQKWEKLKQIEGEAEMVI-------EEVEKAAEVVEKVATVAENVSAEVA 80
+ILSL QK E+L + EG +V+ E +EK +VE+ + ++ V E
Sbjct: 296 AILSLTGGLSIQKQERLLKYEGSGRIVVATPGRFLELIEKDKTLVERFSQISTLVLDEAD 355
Query: 81 EILPDH--TKFKDAALFVERVAKETAHDAQ 108
+L D +F++ ++ R +K H+ Q
Sbjct: 356 RLLQDGHFDEFENILKYLGRESKNRKHNWQ 385
>sp|Q12XS4|SPSS1_METBU O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1 OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_0796 PE=3 SV=1
Length = 459
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 61 AAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEV 120
A+ ++EK TV + A E L + A + R A H+ E+ HK+DEV
Sbjct: 160 ASSIIEKGDTVVVSTFAHYTEFLA-----VEGAGGIVREAPVNEHNILTAESVAHKIDEV 214
Query: 121 KQDINDLEKLVEPVVDKF 138
K++ L L+ ++D F
Sbjct: 215 KRETGKLPALI--MIDHF 230
>sp|O60610|DIAP1_HUMAN Protein diaphanous homolog 1 OS=Homo sapiens GN=DIAPH1 PE=1 SV=2
Length = 1272
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 84 PDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVE--PVV----DK 137
PD KF D VE+ ++ +A EN +D++K+ I+D+E+ V+ P DK
Sbjct: 1032 PDVLKFPDELAHVEKASRVSA------ENLQKNLDQMKKQISDVERDVQNFPAATDEKDK 1085
Query: 138 FVEEET 143
FVE+ T
Sbjct: 1086 FVEKMT 1091
>sp|Q6NJF6|RPOC_CORDI DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=rpoC PE=3 SV=1
Length = 1336
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 46 QIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVA-KETA 104
Q EAEM++E+ + A++ ++A A + ++AE+ K DA V++ A KE
Sbjct: 148 QTTLEAEMLLEKKDVEADMESEIAERAAKLEEDLAELEAAGAK-ADARNKVKKAAEKEMQ 206
Query: 105 HDAQLTENFIHKVDEVKQDINDL--------EKLVEPVVDKF 138
H + E I +++E+ Q L E + E +VD++
Sbjct: 207 HIRERAEREIDRLEEIWQTFIKLAPKQMIIDETIYEELVDRY 248
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 65 VEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHD 106
+E + ++ ENVSA+V ++ PDH K +L V+ + A+D
Sbjct: 519 IEDIISIGENVSAKVIKLDPDHKK---VSLSVKEYLADNAYD 557
>sp|Q076A6|MYH1_CANFA Myosin-1 OS=Canis familiaris GN=MYH1 PE=3 SV=2
Length = 1939
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 44 LKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKET 103
+ QI+GE E +I+E A E +K T A A +AE L K +D + +ER+ K
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDA----AMMAEELK---KEQDTSAHLERMKKNM 1790
Query: 104 AHDAQLTENFIHKVDEVKQ 122
Q ++ H++DE +Q
Sbjct: 1791 ---EQTVKDLQHRLDEAEQ 1806
>sp|Q076A7|MYH2_CANFA Myosin-2 OS=Canis familiaris GN=MYH2 PE=3 SV=1
Length = 1940
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 44 LKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKET 103
+ QI+GE E +I+E A E +K T A A +AE L K +D + +ER+ K
Sbjct: 1739 ISQIQGEMEDIIQEARNAEEKAKKAITDA----AMMAEELK---KEQDTSAHLERMKKNM 1791
Query: 104 AHDAQLTENFIHKVDEVKQ 122
Q ++ H++DE +Q
Sbjct: 1792 ---EQTVKDLQHRLDEAEQ 1807
>sp|Q9TV61|MYH1_PIG Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1
Length = 1939
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 44 LKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKET 103
+ QI+GE E +I+E A E +K T A A +AE L K +D + +ER+ K
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDA----AMMAEELK---KEQDTSAHLERMKKNL 1790
Query: 104 AHDAQLTENFIHKVDEVKQ 122
Q ++ H++DE +Q
Sbjct: 1791 ---EQTVKDLQHRLDEAEQ 1806
>sp|P12882|MYH1_HUMAN Myosin-1 OS=Homo sapiens GN=MYH1 PE=1 SV=3
Length = 1939
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 44 LKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKET 103
+ QI+GE E +I+E A E +K T A A +AE L K +D + +ER+ K
Sbjct: 1738 ISQIQGEMEDIIQEARNAEEKAKKAITDA----AMMAEELK---KEQDTSAHLERMKKNL 1790
Query: 104 AHDAQLTENFIHKVDEVKQ 122
Q ++ H++DE +Q
Sbjct: 1791 ---EQTVKDLQHRLDEAEQ 1806
>sp|C3PKN2|RPOC_CORA7 DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)
GN=rpoC PE=3 SV=1
Length = 1331
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 50 EAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVA-KETAHDAQ 108
EAEM++E+ + +V ++A A + ++AE+ K DA V+ A KE H +
Sbjct: 152 EAEMLLEKKDVEDDVEAEIAERAAKLEQDLAELEAAGAK-ADARRKVQNAADKEMQHIRE 210
Query: 109 LTENFIHKVDEV---------KQDINDLEKLVEPVVDKF 138
E + ++DE+ KQ I D E + E +VD++
Sbjct: 211 RGEREVARLDEIWNTFIKLAPKQMIID-ETIYEELVDRY 248
>sp|B1LBS6|RRF_THESQ Ribosome-recycling factor OS=Thermotoga sp. (strain RQ2) GN=frr
PE=3 SV=1
Length = 185
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 58 VEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQ-LTENFIHK 116
V+KA E+VE+ N+ E+ + + + K L E AK ++ Q LT+ FI K
Sbjct: 114 VKKAKEIVEEGKIAIRNIRREILKKIKEDQK---EGLIPEDDAKRLENEIQKLTDEFIEK 170
Query: 117 VDEV 120
+DEV
Sbjct: 171 LDEV 174
>sp|Q9X1B9|RRF_THEMA Ribosome-recycling factor OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=frr PE=1 SV=1
Length = 185
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 58 VEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQ-LTENFIHK 116
V+KA E+VE+ N+ E+ + + + K L E AK ++ Q LT+ FI K
Sbjct: 114 VKKAKEIVEEGKIAIRNIRREILKKIKEDQK---EGLIPEDDAKRLENEIQKLTDEFIEK 170
Query: 117 VDEV 120
+DEV
Sbjct: 171 LDEV 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,701,077
Number of Sequences: 539616
Number of extensions: 2024176
Number of successful extensions: 9845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 9668
Number of HSP's gapped (non-prelim): 467
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)