Query 039737
Match_columns 144
No_of_seqs 46 out of 48
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 12:45:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2629 Peroxisomal membrane a 92.7 6.4 0.00014 34.8 14.0 30 16-45 78-112 (300)
2 COG1392 Phosphate transport re 92.6 1.7 3.6E-05 35.9 9.8 23 107-129 146-168 (217)
3 PF12325 TMF_TATA_bd: TATA ele 91.3 5.1 0.00011 30.6 10.6 90 42-138 23-119 (120)
4 PRK15048 methyl-accepting chem 89.4 12 0.00026 33.2 12.8 21 111-131 343-363 (553)
5 PF09682 Holin_LLH: Phage holi 87.6 9.2 0.0002 28.0 11.3 72 22-100 5-81 (108)
6 PF06103 DUF948: Bacterial pro 86.8 5.8 0.00013 27.6 7.5 35 92-126 52-86 (90)
7 PF05529 Bap31: B-cell recepto 85.4 16 0.00035 28.6 10.5 36 24-59 105-142 (192)
8 PF06103 DUF948: Bacterial pro 84.3 11 0.00025 26.1 10.6 48 33-80 17-64 (90)
9 PF11044 TMEMspv1-c74-12: Plec 82.6 3 6.5E-05 27.9 4.2 34 18-51 1-36 (49)
10 PF10046 BLOC1_2: Biogenesis o 81.4 8.9 0.00019 27.7 6.7 47 87-133 38-84 (99)
11 PRK15041 methyl-accepting chem 80.9 43 0.00093 30.3 12.2 25 108-132 342-366 (554)
12 COG4768 Uncharacterized protei 80.4 9 0.00019 30.6 6.9 48 91-138 35-82 (139)
13 PF07889 DUF1664: Protein of u 79.1 27 0.0006 27.0 9.8 61 62-128 42-102 (126)
14 PF06825 HSBP1: Heat shock fac 72.9 16 0.00035 24.6 5.6 44 93-136 5-49 (54)
15 PRK11677 hypothetical protein; 72.5 44 0.00095 26.1 8.7 38 21-58 3-45 (134)
16 TIGR00153 conserved hypothetic 70.6 52 0.0011 26.1 9.3 20 107-126 146-165 (216)
17 PRK09793 methyl-accepting prot 67.4 94 0.002 27.8 12.0 13 112-124 342-354 (533)
18 PRK01433 hscA chaperone protei 67.2 88 0.0019 29.2 10.9 75 65-142 514-589 (595)
19 PRK15041 methyl-accepting chem 64.6 1.1E+02 0.0024 27.7 15.4 25 51-75 274-298 (554)
20 PRK15048 methyl-accepting chem 63.2 1.1E+02 0.0024 27.2 15.6 35 43-77 264-298 (553)
21 COG1184 GCD2 Translation initi 62.3 1.1E+02 0.0024 26.9 10.9 80 46-125 17-110 (301)
22 KOG1962 B-cell receptor-associ 62.1 98 0.0021 26.2 11.2 99 24-137 101-201 (216)
23 PF09577 Spore_YpjB: Sporulati 61.6 9.6 0.00021 32.2 3.3 25 18-42 198-224 (232)
24 TIGR02976 phageshock_pspB phag 61.1 16 0.00035 26.0 3.9 29 104-132 38-66 (75)
25 PRK11611 enhanced serine sensi 59.9 3.2 6.9E-05 35.3 0.2 18 29-46 223-240 (246)
26 PRK09793 methyl-accepting prot 59.2 1.3E+02 0.0029 26.9 15.6 22 56-77 275-296 (533)
27 PRK06568 F0F1 ATP synthase sub 58.6 91 0.002 24.7 14.2 15 36-50 21-35 (154)
28 COG0840 Tar Methyl-accepting c 58.2 1.1E+02 0.0024 25.5 14.8 58 62-122 165-222 (408)
29 PF05802 EspB: Enterobacterial 54.4 84 0.0018 28.1 8.0 62 66-130 157-218 (317)
30 PF06667 PspB: Phage shock pro 53.6 26 0.00056 25.0 3.9 28 105-132 39-66 (75)
31 PRK04288 antiholin-like protei 52.5 19 0.0004 30.5 3.6 21 19-39 64-85 (232)
32 PF10168 Nup88: Nuclear pore c 51.9 1.9E+02 0.0041 28.1 10.5 91 46-141 569-665 (717)
33 smart00283 MA Methyl-accepting 50.2 1.1E+02 0.0024 23.3 14.0 35 91-125 197-231 (262)
34 COG1346 LrgB Putative effector 48.2 23 0.00049 30.3 3.5 21 19-39 61-82 (230)
35 PF06008 Laminin_I: Laminin Do 48.1 1.5E+02 0.0034 24.3 13.4 98 45-143 76-192 (264)
36 PF12729 4HB_MCP_1: Four helix 47.7 95 0.0021 21.7 16.4 122 17-138 1-132 (181)
37 PRK09458 pspB phage shock prot 47.7 36 0.00079 24.5 3.9 28 105-132 39-66 (75)
38 PF04172 LrgB: LrgB-like famil 47.5 26 0.00057 29.1 3.7 21 19-39 48-69 (215)
39 PRK10711 hypothetical protein; 47.3 21 0.00047 30.1 3.2 21 19-39 59-80 (231)
40 PF07412 Geminin: Geminin; In 46.4 70 0.0015 26.8 6.0 49 61-109 123-171 (200)
41 PF10805 DUF2730: Protein of u 46.0 1.2E+02 0.0025 22.3 11.5 58 59-117 38-95 (106)
42 PF15079 DUF4546: Domain of un 45.7 74 0.0016 26.7 6.0 37 89-125 63-99 (205)
43 COG0840 Tar Methyl-accepting c 45.4 1.8E+02 0.0039 24.2 13.3 48 56-106 138-185 (408)
44 PF11932 DUF3450: Protein of u 44.3 1.8E+02 0.0038 23.8 13.2 94 42-138 21-114 (251)
45 PF10883 DUF2681: Protein of u 43.9 1.3E+02 0.0028 22.1 8.0 38 23-60 4-41 (87)
46 COG1392 Phosphate transport re 43.2 1.9E+02 0.0041 23.9 10.8 79 61-139 85-171 (217)
47 PF06005 DUF904: Protein of un 39.4 1.3E+02 0.0029 21.0 6.8 34 43-76 5-38 (72)
48 PF13807 GNVR: G-rich domain o 37.9 52 0.0011 22.5 3.4 21 16-36 54-74 (82)
49 KOG0161 Myosin class II heavy 37.5 4.5E+02 0.0098 29.0 11.4 100 33-132 1713-1818(1930)
50 PF13755 Sensor_TM1: Sensor N- 37.5 1.2E+02 0.0026 21.9 5.4 31 37-69 36-66 (79)
51 PF08824 Serine_rich: Serine r 37.3 66 0.0014 25.8 4.4 82 26-108 17-101 (159)
52 PF09878 DUF2105: Predicted me 35.7 31 0.00068 29.2 2.4 18 20-37 167-184 (212)
53 TIGR00659 conserved hypothetic 35.7 45 0.00098 28.1 3.3 22 19-40 58-80 (226)
54 PF11166 DUF2951: Protein of u 35.6 38 0.00082 25.7 2.6 21 16-36 67-87 (98)
55 PF12732 YtxH: YtxH-like prote 35.5 1.4E+02 0.003 20.1 7.8 13 24-36 5-17 (74)
56 PF07271 Cytadhesin_P30: Cytad 34.0 1.2E+02 0.0027 26.7 5.8 19 24-44 84-102 (279)
57 PF06160 EzrA: Septation ring 32.8 4.1E+02 0.0088 24.7 13.2 104 35-138 379-495 (560)
58 PF11221 Med21: Subunit 21 of 32.2 2.3E+02 0.005 21.6 7.6 33 73-105 82-115 (144)
59 PF05802 EspB: Enterobacterial 31.6 3.9E+02 0.0084 24.1 8.9 31 90-121 196-226 (317)
60 PF07200 Mod_r: Modifier of ru 30.6 2.3E+02 0.0049 21.1 6.7 27 59-85 95-121 (150)
61 PRK07598 RNA polymerase sigma 30.4 1E+02 0.0022 28.1 4.9 21 13-33 223-244 (415)
62 PF05508 Ran-binding: RanGTP-b 29.9 4E+02 0.0087 23.7 10.1 65 41-118 44-108 (302)
63 PRK10337 sensor protein QseC; 29.9 3.3E+02 0.0072 22.8 13.1 16 37-52 182-197 (449)
64 PRK06975 bifunctional uroporph 29.8 5E+02 0.011 24.7 10.7 29 21-50 324-354 (656)
65 PHA00735 hypothetical protein 29.5 52 0.0011 32.1 3.0 29 9-38 722-753 (808)
66 PHA02845 hypothetical protein; 29.4 91 0.002 23.4 3.7 32 110-141 2-33 (91)
67 COG3352 FlaC Putative archaeal 29.0 2.1E+02 0.0047 23.3 6.0 28 111-138 110-138 (157)
68 PF10960 DUF2762: Protein of u 28.9 2.1E+02 0.0045 20.1 6.9 13 19-31 13-25 (71)
69 PHA02818 hypothetical protein; 28.1 85 0.0018 23.6 3.4 33 110-142 2-34 (92)
70 TIGR01386 cztS_silS_copS heavy 28.0 3.4E+02 0.0074 22.3 14.6 13 41-53 189-201 (457)
71 KOG0100 Molecular chaperones G 27.3 5.8E+02 0.013 24.7 9.7 23 118-140 621-643 (663)
72 COG5490 Uncharacterized conser 27.3 2.1E+02 0.0045 23.4 5.7 46 49-96 109-154 (158)
73 TIGR01673 holin_LLH phage holi 27.2 2.7E+02 0.0059 20.9 9.1 40 58-97 37-77 (108)
74 PF08219 TOM13: Outer membrane 26.8 1.1E+02 0.0023 22.4 3.6 33 7-40 15-48 (77)
75 PF10360 DUF2433: Protein of u 25.7 1.4E+02 0.003 23.6 4.3 42 46-87 34-75 (132)
76 PRK10574 putative major pilin 25.7 2.4E+02 0.0053 21.9 5.7 29 15-43 6-36 (146)
77 PLN02678 seryl-tRNA synthetase 25.6 2.3E+02 0.005 26.0 6.4 31 109-139 72-102 (448)
78 COG4338 Uncharacterized protei 25.4 36 0.00078 23.2 0.9 9 35-43 21-30 (54)
79 TIGR03545 conserved hypothetic 25.1 5.9E+02 0.013 24.1 9.9 39 63-101 167-205 (555)
80 PF05164 ZapA: Cell division p 24.8 2.2E+02 0.0047 19.0 9.7 61 64-125 22-82 (89)
81 PF10828 DUF2570: Protein of u 24.1 2.9E+02 0.0063 20.1 12.8 56 43-112 26-81 (110)
82 TIGR00996 Mtu_fam_mce virulenc 23.9 4E+02 0.0087 21.7 10.2 48 72-122 176-223 (291)
83 PF10158 LOH1CR12: Tumour supp 23.7 3.5E+02 0.0075 20.9 7.5 29 113-141 85-113 (131)
84 PF08639 SLD3: DNA replication 23.6 52 0.0011 30.1 1.8 19 23-41 260-278 (497)
85 PF14012 DUF4229: Protein of u 23.4 2.4E+02 0.0052 19.4 4.7 29 18-51 30-58 (69)
86 PRK05431 seryl-tRNA synthetase 23.4 2.9E+02 0.0063 24.8 6.5 31 110-140 68-98 (425)
87 PRK08808 general secretion pat 23.3 3.3E+02 0.0072 22.5 6.3 52 22-84 17-68 (211)
88 PF08822 DUF1804: Protein of u 23.0 4.2E+02 0.009 21.6 8.9 88 35-125 74-162 (165)
89 TIGR00782 ccoP cytochrome c ox 22.8 3.1E+02 0.0068 22.9 6.2 11 41-51 64-74 (285)
90 PHA02649 hypothetical protein; 22.7 1.3E+02 0.0029 22.7 3.5 33 110-142 2-34 (95)
91 PF05852 DUF848: Gammaherpesvi 22.6 1.2E+02 0.0025 24.3 3.4 26 106-134 87-112 (146)
92 KOG3758 Uncharacterized conser 22.4 7.6E+02 0.017 24.4 9.5 89 30-128 36-126 (655)
93 TIGR02680 conserved hypothetic 22.4 9E+02 0.019 25.2 14.2 86 42-128 742-827 (1353)
94 PF01519 DUF16: Protein of unk 22.2 3.6E+02 0.0078 20.5 7.8 21 108-128 81-101 (102)
95 PHA02819 hypothetical protein; 22.1 1.4E+02 0.003 21.5 3.4 27 10-36 35-61 (71)
96 PF09371 Tex_N: Tex-like prote 22.0 3.6E+02 0.0078 22.0 6.2 43 90-133 55-97 (193)
97 TIGR02878 spore_ypjB sporulati 21.9 99 0.0021 26.6 3.1 27 16-42 197-225 (233)
98 PRK11166 chemotaxis regulator 21.9 4.8E+02 0.01 21.9 7.5 33 78-116 43-75 (214)
99 PHA02844 putative transmembran 21.7 1.4E+02 0.003 21.7 3.3 27 10-36 37-63 (75)
100 PF05597 Phasin: Poly(hydroxya 21.5 3.9E+02 0.0084 20.7 12.3 10 22-31 21-30 (132)
101 PF06305 DUF1049: Protein of u 21.5 2.3E+02 0.0051 18.1 5.3 32 23-54 27-60 (68)
102 PRK02224 chromosome segregatio 21.2 7.2E+02 0.016 23.6 11.0 19 110-128 574-592 (880)
103 cd01306 PhnM PhnM is believed 21.1 1.5E+02 0.0034 25.7 4.2 44 81-124 117-160 (325)
104 PLN02320 seryl-tRNA synthetase 21.1 3.1E+02 0.0068 25.8 6.4 46 95-140 115-162 (502)
105 KOG2262 Sexual differentiation 20.4 1.2E+02 0.0025 30.2 3.5 34 9-42 59-94 (761)
106 PF05803 Chordopox_L2: Chordop 20.2 1.4E+02 0.0031 21.9 3.3 33 110-142 1-33 (87)
No 1
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=6.4 Score=34.79 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=22.7
Q ss_pred CChhHHHHH-----HHHHHHHHHhhhhHHHHHHHH
Q 039737 16 FNFSLWAKW-----ILGSILSLLLPFWKQKWEKLK 45 (144)
Q Consensus 16 ~~~p~W~~w-----vlG~il~~~vPf~~~kw~~l~ 45 (144)
+....|.-| +++||.|.+.+|||+|-.|..
T Consensus 78 ~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~~ 112 (300)
T KOG2629|consen 78 NVLRRWRDYFVMAVILAGIAYAAYRFVKSYVLPRF 112 (300)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 345789877 678888999999998765543
No 2
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=92.60 E-value=1.7 Score=35.95 Aligned_cols=23 Identities=13% Similarity=0.442 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHH
Q 039737 107 AQLTENFIHKVDEVKQDINDLEK 129 (144)
Q Consensus 107 A~~ae~~I~KVeei~~~id~~e~ 129 (144)
++++..++++|+.++++.|++..
T Consensus 146 ~~~~~~i~~eI~~~E~e~D~i~~ 168 (217)
T COG1392 146 ADRLLEIIKEIEALEHECDDIQR 168 (217)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 66778899999999999996554
No 3
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.33 E-value=5.1 Score=30.60 Aligned_cols=90 Identities=19% Similarity=0.434 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHH-------
Q 039737 42 EKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFI------- 114 (144)
Q Consensus 42 ~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I------- 114 (144)
..++++++++-..-+. +..+..-=+.+++++.....+|..++.....+..+-.++.+==++-+.++
T Consensus 23 s~lr~~E~E~~~l~~e-------l~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 23 SQLRRLEGELASLQEE-------LARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 4788888888665333 56666777888889999999999999888888888888877666666665
Q ss_pred HhHHHHHHhHHHHHHhhhhHHHHH
Q 039737 115 HKVDEVKQDINDLEKLVEPVVDKF 138 (144)
Q Consensus 115 ~KVeei~~~id~~e~~Vepvid~~ 138 (144)
+.|++++.||.||+.|..--|+.+
T Consensus 96 E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999998888765
No 4
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=89.41 E-value=12 Score=33.19 Aligned_cols=21 Identities=5% Similarity=0.404 Sum_probs=9.2
Q ss_pred HHHHHhHHHHHHhHHHHHHhh
Q 039737 111 ENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 111 e~~I~KVeei~~~id~~e~~V 131 (144)
+.+.+.++++.+..++...++
T Consensus 343 ~~~~~~~~~l~~~~~~I~~i~ 363 (553)
T PRK15048 343 DGVVKTMHEIADSSKKIADII 363 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 5
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=87.57 E-value=9.2 Score=28.01 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcchHHHHHHH
Q 039737 22 AKWILGSIL----SLLLPFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPD-HTKFKDAALFV 96 (144)
Q Consensus 22 ~~wvlG~il----~~~vPf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPe-ngkLk~aA~~V 96 (144)
..+++++++ ++++.+|.++.-++++-.- ..|+...+.+-+|..+-..++.++..-.. ..|+.+|..+|
T Consensus 5 ~~~ii~~~~~i~l~ii~~~~~~~~~~~l~~k~-------~~e~~~~~~~~vak~Av~aveq~~~~~~~G~~K~~~A~~~v 77 (108)
T PF09682_consen 5 TNIIITVALSIVLAIIAGIIVKYVIKYLKKKA-------GGEKLVKILEIVAKIAVNAVEQVAKEGGKGEEKKAEAVQYV 77 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 344555444 4455666665555544332 34455666677777777777887777643 25666666555
Q ss_pred HHHH
Q 039737 97 ERVA 100 (144)
Q Consensus 97 E~va 100 (144)
...-
T Consensus 78 ~~~L 81 (108)
T PF09682_consen 78 KERL 81 (108)
T ss_pred HHHH
Confidence 4443
No 6
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=86.82 E-value=5.8 Score=27.57 Aligned_cols=35 Identities=3% Similarity=0.152 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHH
Q 039737 92 AALFVERVAKETAHDAQLTENFIHKVDEVKQDIND 126 (144)
Q Consensus 92 aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~ 126 (144)
.......+.++|.+..+.++.+.+.|.++.+-+.+
T Consensus 52 ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 52 LLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666654443
No 7
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.37 E-value=16 Score=28.63 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHH
Q 039737 24 WILGSILSLLLPFWK--QKWEKLKQIEGEAEMVIEEVE 59 (144)
Q Consensus 24 wvlG~il~~~vPf~~--~kw~~l~~ie~evE~vie~vE 59 (144)
|+-|+++++.+=.+| +.-..+.+++++.+.....++
T Consensus 105 YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 105 YISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999887666655 223456666666655444433
No 8
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=84.27 E-value=11 Score=26.06 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=23.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 33 LLPFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVA 80 (144)
Q Consensus 33 ~vPf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA 80 (144)
+++++++-...+..+...++.+-+.++....-+.+.-.-+..+.++|-
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444445555555544444444444444444444444444444
No 9
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=82.61 E-value=3 Score=27.94 Aligned_cols=34 Identities=26% Similarity=0.536 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHH
Q 039737 18 FSLWAKWILGSILSLLLPFWKQ--KWEKLKQIEGEA 51 (144)
Q Consensus 18 ~p~W~~wvlG~il~~~vPf~~~--kw~~l~~ie~ev 51 (144)
+|+|..|+++.++.+.+=.|-+ ...+.++|+++-
T Consensus 1 mp~wlt~iFsvvIil~If~~iGl~IyQkikqIrgKk 36 (49)
T PF11044_consen 1 MPTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRGKK 36 (49)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6899999998877654432322 133567777653
No 10
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=81.38 E-value=8.9 Score=27.72 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhh
Q 039737 87 TKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVEP 133 (144)
Q Consensus 87 gkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Vep 133 (144)
.++++.+.-+..-++....--...+..+++++.|++++..||..|.-
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777788889999999999999999888763
No 11
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=80.90 E-value=43 Score=30.27 Aligned_cols=25 Identities=4% Similarity=0.412 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
+.++.+.+.++++.+..++...+++
T Consensus 342 ~~~~~~~~~~~~l~~~~~~I~~i~~ 366 (554)
T PRK15041 342 KVVDNVVQTMRDISTSSQKIADIIS 366 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555554444444
No 12
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=80.41 E-value=9 Score=30.58 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhhHHHHH
Q 039737 91 DAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVEPVVDKF 138 (144)
Q Consensus 91 ~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Vepvid~~ 138 (144)
+++..++.+...++--.|.++.++||.-.+-+|+..=.+-++|+.+.+
T Consensus 35 evakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~vf~aV 82 (139)
T COG4768 35 EVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPVFDAV 82 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHH
Confidence 334444555555555666677777777777666665555666766654
No 13
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.14 E-value=27 Score=27.00 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHH
Q 039737 62 AEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLE 128 (144)
Q Consensus 62 aEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e 128 (144)
++.+..|..-.++|++.++. .=|..-.+|+++-..+++-.+..+.+-++|.++..+++++.
T Consensus 42 ~~A~~~v~kql~~vs~~l~~------tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSS------TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55577777788888888773 34555667777777777766666666666666555444333
No 14
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=72.87 E-value=16 Score=24.63 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhHH-HHHHHHHhHHHHHHhHHHHHHhhhhHHH
Q 039737 93 ALFVERVAKETAHDAQ-LTENFIHKVDEVKQDINDLEKLVEPVVD 136 (144)
Q Consensus 93 A~~VE~vae~v~~dA~-~ae~~I~KVeei~~~id~~e~~Vepvid 136 (144)
..+|+++-......-+ .-..|+.|+|++...||+||+-+.-++.
T Consensus 5 t~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 5 TAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555555544333 3467999999999999999998766554
No 15
>PRK11677 hypothetical protein; Provisional
Probab=72.54 E-value=44 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHHHHH
Q 039737 21 WAKWILGSILSLLLPFWKQKW-----EKLKQIEGEAEMVIEEV 58 (144)
Q Consensus 21 W~~wvlG~il~~~vPf~~~kw-----~~l~~ie~evE~vie~v 58 (144)
|.-|++|.|+.+++-|+-.++ ..-..++.+.|.+....
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAEL 45 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 888899888888888866443 23445666666554444
No 16
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=70.60 E-value=52 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.496 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHHHHHHhHHH
Q 039737 107 AQLTENFIHKVDEVKQDIND 126 (144)
Q Consensus 107 A~~ae~~I~KVeei~~~id~ 126 (144)
...+.+.+++|..++.+.|+
T Consensus 146 ~~~i~~~~~~I~~lE~e~D~ 165 (216)
T TIGR00153 146 LSLANDIIKEIKDLEDEIDV 165 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777774
No 17
>PRK09793 methyl-accepting protein IV; Provisional
Probab=67.35 E-value=94 Score=27.84 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=4.9
Q ss_pred HHHHhHHHHHHhH
Q 039737 112 NFIHKVDEVKQDI 124 (144)
Q Consensus 112 ~~I~KVeei~~~i 124 (144)
.+.+.++++.+..
T Consensus 342 ~~~~~~~~l~~~s 354 (533)
T PRK09793 342 TMTHTMQEIATSS 354 (533)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=67.20 E-value=88 Score=29.24 Aligned_cols=75 Identities=11% Similarity=0.218 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHH-HHHhhhhHHHHHHhhh
Q 039737 65 VEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDIND-LEKLVEPVVDKFVEEE 142 (144)
Q Consensus 65 VE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~-~e~~Vepvid~~~k~~ 142 (144)
.+..-..+++.-++..+.|++ ....++-..+.+.-+.++++ -...+-++.+++++.++. |+..+.|+|.+.-+..
T Consensus 514 ~~~~~~~~~~~~~~~~~~l~~-~~~~~i~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 589 (595)
T PRK01433 514 AEALIFNIERAIAELTTLLSE-SEISIINSLLDNIKEAVHAR--DIILINNSIKEFKSKIKKSMDTKLNIIINDLLKGK 589 (595)
T ss_pred HHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccC
Confidence 345555556665555566776 44566767777777777643 556777888888988887 8899999999886543
No 19
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=64.56 E-value=1.1e+02 Score=27.67 Aligned_cols=25 Identities=12% Similarity=0.124 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 51 AEMVIEEVEKAAEVVEKVATVAENV 75 (144)
Q Consensus 51 vE~vie~vE~vaEvVE~VAe~tEKv 75 (144)
.+.+...++.+....++++..++..
T Consensus 274 s~~v~~~s~els~~~~~ls~~~~~q 298 (554)
T PRK15041 274 ANAIYSGASEIATGNNDLSSRTEQQ 298 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 20
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=63.24 E-value=1.1e+02 Score=27.22 Aligned_cols=35 Identities=6% Similarity=0.154 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 43 KLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSA 77 (144)
Q Consensus 43 ~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAe 77 (144)
.+..++.....+-..++.+....++++..++..+.
T Consensus 264 ~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~ 298 (553)
T PRK15048 264 TVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQAS 298 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 21
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=62.28 E-value=1.1e+02 Score=26.94 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH------HHHHHHhhHHHHH
Q 039737 46 QIEGEAEMVIEEVEKAAEVV--------EKVATVAENVSAEVAEILPDHTKFKDAALFVER------VAKETAHDAQLTE 111 (144)
Q Consensus 46 ~ie~evE~vie~vE~vaEvV--------E~VAe~tEKvAeevA~~lPengkLk~aA~~VE~------vae~v~~dA~~ae 111 (144)
++.|.....+..+|...... ++.-..-.-+++.+-+.-|...+|-.++.++.+ .+..=..-.+.++
T Consensus 17 ~i~Ga~~ia~~a~eal~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~~~~~~~~~~~~~~~~~~~~ 96 (301)
T COG1184 17 EIRGASWIAIAAAEALEILASDSQAPTVEELIDAIRELSETLVKARPTAVSLGNLIRFVLRDSSGGDKENRRQSLIKAAQ 96 (301)
T ss_pred hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHhcccccchhhHHHHHHHhHH
Confidence 35555555555544444443 444455556778888999999999999999999 5555555666778
Q ss_pred HHHHhHHHHHHhHH
Q 039737 112 NFIHKVDEVKQDIN 125 (144)
Q Consensus 112 ~~I~KVeei~~~id 125 (144)
.||..+++.++++.
T Consensus 97 ~~i~~~~~a~~~ia 110 (301)
T COG1184 97 EFIDRVEKAKERIA 110 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888776
No 22
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=62.08 E-value=98 Score=26.19 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=45.0
Q ss_pred HHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 039737 24 WILGSILSLL--LPFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAK 101 (144)
Q Consensus 24 wvlG~il~~~--vPf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae 101 (144)
.+-|+++++. ++-+-+.-.++.++++. |.+++..+....-++.-..--++ ....-...+..-+
T Consensus 101 YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~~~~~--------------~~~~~~~~~kL~~ 165 (216)
T KOG1962|consen 101 YISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSSKLEEE--------------NDKLKADLEKLET 165 (216)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccchhhh--------------HHHHHhhHHHHHH
Confidence 4556666543 33344555667777765 44444444444433332221111 2222233333344
Q ss_pred HHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhhHHHH
Q 039737 102 ETAHDAQLTENFIHKVDEVKQDINDLEKLVEPVVDK 137 (144)
Q Consensus 102 ~v~~dA~~ae~~I~KVeei~~~id~~e~~Vepvid~ 137 (144)
+..+...+.+-...+++.++++.+++-..-+-+.++
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 444444444445555555555555444444444433
No 23
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=61.61 E-value=9.6 Score=32.16 Aligned_cols=25 Identities=20% Similarity=0.583 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHhhh--hHHHHH
Q 039737 18 FSLWAKWILGSILSLLLPF--WKQKWE 42 (144)
Q Consensus 18 ~p~W~~wvlG~il~~~vPf--~~~kw~ 42 (144)
...|.-+.+|+++.++|.| ||.|++
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRKYrg 224 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRKYRG 224 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888899999999999 666665
No 24
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=61.10 E-value=16 Score=25.96 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 104 AHDAQLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 104 ~~dA~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
++|.++.+.+.++.+.+++.|+-||++++
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 38 TDDQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35777888888888888888888888875
No 25
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=59.93 E-value=3.2 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.768 Sum_probs=13.7
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 039737 29 ILSLLLPFWKQKWEKLKQ 46 (144)
Q Consensus 29 il~~~vPf~~~kw~~l~~ 46 (144)
++.-.-|||+|+||..+|
T Consensus 223 ~~~h~~PFYqR~~g~~lr 240 (246)
T PRK11611 223 ITEHITPFYERRWGSFLR 240 (246)
T ss_pred HHhcCCCceecchhHHHh
Confidence 344567999999987765
No 26
>PRK09793 methyl-accepting protein IV; Provisional
Probab=59.22 E-value=1.3e+02 Score=26.87 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039737 56 EEVEKAAEVVEKVATVAENVSA 77 (144)
Q Consensus 56 e~vE~vaEvVE~VAe~tEKvAe 77 (144)
..++.+....++++..++..+.
T Consensus 275 ~~~~eia~~~~~ls~~~e~qa~ 296 (533)
T PRK09793 275 IGIAEIVAGNNDLSSRTEQQAA 296 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 27
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=58.55 E-value=91 Score=24.69 Aligned_cols=15 Identities=0% Similarity=0.034 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHH
Q 039737 36 FWKQKWEKLKQIEGE 50 (144)
Q Consensus 36 f~~~kw~~l~~ie~e 50 (144)
+++--|+|+..+-++
T Consensus 21 l~kfawkPI~~~Lee 35 (154)
T PRK06568 21 IYRPAKKAILNSLDA 35 (154)
T ss_pred HHHHhHHHHHHHHHH
Confidence 676669998876543
No 28
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=58.18 E-value=1.1e+02 Score=25.49 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 039737 62 AEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQ 122 (144)
Q Consensus 62 aEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~ 122 (144)
..-++.++...+.++..+-+.- ...+.++..+..+.+...+..+.....+.++.++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 222 (408)
T COG0840 165 AESLEEVASAIEELSETVKEVA---FNAKEAAALASEASQVAEEGGEEVRQAVEQMQEIAE 222 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333211 344555555555555555566666666666666653
No 29
>PF05802 EspB: Enterobacterial EspB protein
Probab=54.42 E-value=84 Score=28.14 Aligned_cols=62 Identities=23% Similarity=0.282 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHh
Q 039737 66 EKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKL 130 (144)
Q Consensus 66 E~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~ 130 (144)
|.+++..+|.++.+-..+ +.+-+||+++-.|++.+.+-|+++-++++.+-+.-++-.-+-.|
T Consensus 157 Esl~d~~~KAseiMQQim---~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~k~~~~~~~ 218 (317)
T PF05802_consen 157 ESLADAMEKASEIMQQIM---ATATKAASRTSGVADDVATSAQKASQLAEQAADAAQKASRLSRF 218 (317)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344445555555444332 67888999999999999988888888888776655544433333
No 30
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=53.65 E-value=26 Score=25.01 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 105 HDAQLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 105 ~dA~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
+|.+..+++.++-+.+++.|+-||++++
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 39 EDEQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4777788888888888888888888775
No 31
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=52.49 E-value=19 Score=30.53 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=17.9
Q ss_pred hHHHHHHHH-HHHHHHhhhhHH
Q 039737 19 SLWAKWILG-SILSLLLPFWKQ 39 (144)
Q Consensus 19 p~W~~wvlG-~il~~~vPf~~~ 39 (144)
..|-.|.+| +++++++|.|+|
T Consensus 64 ~~~l~~lLgPAtVALAvPLY~q 85 (232)
T PRK04288 64 GDIISFFLEPATIAFAIPLYKK 85 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 478889998 678899999996
No 32
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.91 E-value=1.9e+02 Score=28.12 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHh------hHHHHHHHHHhHHH
Q 039737 46 QIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAH------DAQLTENFIHKVDE 119 (144)
Q Consensus 46 ~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~------dA~~ae~~I~KVee 119 (144)
.|+.+.+.-.+....+.+-.+.+.+.++++|+...+..=... +...+++.+...+.. +|+ .++.+.++.
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe---~L~~R~~~vl~~l~~~~P~LS~AE--r~~~~EL~~ 643 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQE---KLMKRVDRVLQLLNSQLPVLSEAE--REFKKELER 643 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCCCHHH--HHHHHHHHH
Confidence 344455554555555666666666677777665554432222 222233333332211 222 355666666
Q ss_pred HHHhHHHHHHhhhhHHHHHHhh
Q 039737 120 VKQDINDLEKLVEPVVDKFVEE 141 (144)
Q Consensus 120 i~~~id~~e~~Vepvid~~~k~ 141 (144)
++.+++.+.+-++-+=.++.++
T Consensus 644 ~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 644 MKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555444443
No 33
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=50.24 E-value=1.1e+02 Score=23.26 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHH
Q 039737 91 DAALFVERVAKETAHDAQLTENFIHKVDEVKQDIN 125 (144)
Q Consensus 91 ~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id 125 (144)
.....++.+...+.+-++.++.+-..++++...++
T Consensus 197 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 231 (262)
T smart00283 197 EIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQ 231 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 34
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=48.18 E-value=23 Score=30.26 Aligned_cols=21 Identities=33% Similarity=0.914 Sum_probs=17.8
Q ss_pred hHHHHHHHH-HHHHHHhhhhHH
Q 039737 19 SLWAKWILG-SILSLLLPFWKQ 39 (144)
Q Consensus 19 p~W~~wvlG-~il~~~vPf~~~ 39 (144)
..|-.+.+| +++.+++|.|+|
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYkq 82 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYKQ 82 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHHH
Confidence 478888888 678889999995
No 35
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.07 E-value=1.5e+02 Score=24.26 Aligned_cols=98 Identities=15% Similarity=0.319 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h---hCCCCcchHHHHHHHHHHHHHH------------Hhh
Q 039737 45 KQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVA---E---ILPDHTKFKDAALFVERVAKET------------AHD 106 (144)
Q Consensus 45 ~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA---~---~lPengkLk~aA~~VE~vae~v------------~~d 106 (144)
.++...++.+...+++...-|..+-..+.-+-+.+. . .+|. +.|.++-..++.+-+++ +..
T Consensus 76 ~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~-~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~E 154 (264)
T PF06008_consen 76 QQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPS-EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDE 154 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCH-HHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 334444444555555555444444444444444442 2 4454 88888888887777766 556
Q ss_pred HHHHHHHHHhHHHH-HHhHHHHHHhhhhHHHHHHhhhc
Q 039737 107 AQLTENFIHKVDEV-KQDINDLEKLVEPVVDKFVEEET 143 (144)
Q Consensus 107 A~~ae~~I~KVeei-~~~id~~e~~Vepvid~~~k~~~ 143 (144)
-..|+.++.+|... .+-.++.++..+.|-+.+.+.++
T Consensus 155 l~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~ 192 (264)
T PF06008_consen 155 LKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNA 192 (264)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHH
Confidence 67788888888884 56566777888887777765544
No 36
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=47.74 E-value=95 Score=21.72 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CcchHHH
Q 039737 17 NFSLWAKWILGSILSLLLPFWKQK--WEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPD--HTKFKDA 92 (144)
Q Consensus 17 ~~p~W~~wvlG~il~~~vPf~~~k--w~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPe--ngkLk~a 92 (144)
|+....|.++|+.+.+++-+.-+. +..+.++.+.++.+.+..-.....+.++......+-..+.+.+-. ....++.
T Consensus 1 Nl~I~~KL~~~f~~~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (181)
T PF12729_consen 1 NLSIRTKLILGFGLIILLLLIVGIVGLYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRALRRYLLATDPEERQEI 80 (181)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 345556666665555444332221 234777888887766655445555566666666665555544433 2333333
Q ss_pred HHHHHHHHHHHHhhHHHHHHH------HHhHHHHHHhHHHHHHhhhhHHHHH
Q 039737 93 ALFVERVAKETAHDAQLTENF------IHKVDEVKQDINDLEKLVEPVVDKF 138 (144)
Q Consensus 93 A~~VE~vae~v~~dA~~ae~~------I~KVeei~~~id~~e~~Vepvid~~ 138 (144)
...+......+.+--+..+.. -..+++++...++.....+.+++-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 132 (181)
T PF12729_consen 81 EKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQVIELA 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333222222211 2234445555555555555555543
No 37
>PRK09458 pspB phage shock protein B; Provisional
Probab=47.69 E-value=36 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 105 HDAQLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 105 ~dA~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
+|-+..+.+.++.+.+.+.|+-||++++
T Consensus 39 ~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 39 EEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667788888888888888888888775
No 38
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=47.53 E-value=26 Score=29.10 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=17.0
Q ss_pred hHHHHHHHH-HHHHHHhhhhHH
Q 039737 19 SLWAKWILG-SILSLLLPFWKQ 39 (144)
Q Consensus 19 p~W~~wvlG-~il~~~vPf~~~ 39 (144)
..|-.|++| +++++++|.||+
T Consensus 48 g~~l~~lLgPatVALAvPLY~~ 69 (215)
T PF04172_consen 48 GDILSFLLGPATVALAVPLYRQ 69 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 467778887 678899999996
No 39
>PRK10711 hypothetical protein; Provisional
Probab=47.35 E-value=21 Score=30.11 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.6
Q ss_pred hHHHHHHHH-HHHHHHhhhhHH
Q 039737 19 SLWAKWILG-SILSLLLPFWKQ 39 (144)
Q Consensus 19 p~W~~wvlG-~il~~~vPf~~~ 39 (144)
..|-.|.+| +++++++|.|+|
T Consensus 59 ~~~l~~lLgPAtVALAvPLY~q 80 (231)
T PRK10711 59 SEVLNDLLQPAVVALAFPLYEQ 80 (231)
T ss_pred cHHHHhhhhHHHHHHHHHHHHh
Confidence 468888888 678899999996
No 40
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=46.44 E-value=70 Score=26.81 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHH
Q 039737 61 AAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQL 109 (144)
Q Consensus 61 vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ 109 (144)
+.+--++.-.-.+..=++++.--=+|..|+.+|+.+.|+|+.++.=-..
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~ 171 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQ 171 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444577777778888888877778899999999999999888764443
No 41
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.02 E-value=1.2e+02 Score=22.26 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q 039737 59 EKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKV 117 (144)
Q Consensus 59 E~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KV 117 (144)
+.+.+-+.+......++=..+ ++||...-+++.-..+..+.-++..=....+.+=|.+
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l-~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKL-EHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444555566666654444 5999999999988888888776655444444443333
No 42
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=45.73 E-value=74 Score=26.74 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHH
Q 039737 89 FKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDIN 125 (144)
Q Consensus 89 Lk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id 125 (144)
|++--+.|+.|-...++|-++..+|.+-.-++.+|+|
T Consensus 63 LkEKmeEIKQIKdiMDKDFDKL~EFVEIMKeMQkDMD 99 (205)
T PF15079_consen 63 LKEKMEEIKQIKDIMDKDFDKLHEFVEIMKEMQKDMD 99 (205)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHH
Confidence 4555677899999999999999999999999999999
No 43
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=45.37 E-value=1.8e+02 Score=24.21 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhh
Q 039737 56 EEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHD 106 (144)
Q Consensus 56 e~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~d 106 (144)
...+.+....++++....+++..+.++ ...+.+.+..++.++..+..-
T Consensus 138 ~~~~~l~~~~~~i~~~~~~~~~~~~~q---~~~~~~~~~~~~~~~~~~~~v 185 (408)
T COG0840 138 DNAEALSGASEEIAASATELSARADQQ---AESLEEVASAIEELSETVKEV 185 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555554444 344445555555554444433
No 44
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.26 E-value=1.8e+02 Score=23.81 Aligned_cols=94 Identities=12% Similarity=0.303 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 039737 42 EKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVK 121 (144)
Q Consensus 42 ~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~ 121 (144)
..+..+.+.....++.....-+-+++.++-+..+..++..-.=+ +...-...++..+.++.--+....+=+++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e---~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLERE---IENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666667777777777777777777777666543222 222223445555555544444444444444443
Q ss_pred HhHHHHHHhhhhHHHHH
Q 039737 122 QDINDLEKLVEPVVDKF 138 (144)
Q Consensus 122 ~~id~~e~~Vepvid~~ 138 (144)
+--.++..++.-.++.+
T Consensus 98 ~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 98 ETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 32223334444444444
No 45
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=43.85 E-value=1.3e+02 Score=22.10 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 23 KWILGSILSLLLPFWKQKWEKLKQIEGEAEMVIEEVEK 60 (144)
Q Consensus 23 ~wvlG~il~~~vPf~~~kw~~l~~ie~evE~vie~vE~ 60 (144)
..++|+++++++-++...|.++.+++.+.+...++-++
T Consensus 4 l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~q 41 (87)
T PF10883_consen 4 LQIVGGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQ 41 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677767777777788888888886665444433
No 46
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=43.19 E-value=1.9e+02 Score=23.90 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhCCCC--cchHHHHHHHHHHHHHHHhhHHHHHHHHHh---HHHHHHhHHHHHHhhh
Q 039737 61 AAEVVEKVATVAENVSAEVA---EILPDH--TKFKDAALFVERVAKETAHDAQLTENFIHK---VDEVKQDINDLEKLVE 132 (144)
Q Consensus 61 vaEvVE~VAe~tEKvAeevA---~~lPen--gkLk~aA~~VE~vae~v~~dA~~ae~~I~K---Veei~~~id~~e~~Ve 132 (144)
.++..+++|..+|.+|.-+- ...|++ .-+.+-+..+-..+..+.+--...++..++ +..+.++|+.+|.-.+
T Consensus 85 L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~~~~~~~i~~eI~~~E~e~D 164 (217)
T COG1392 85 LIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLESADRLLEIIKEIEALEHECD 164 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 34556777777777776654 236754 344444444444444444444444444444 5667777777777777
Q ss_pred hHHHHHH
Q 039737 133 PVVDKFV 139 (144)
Q Consensus 133 pvid~~~ 139 (144)
-+-.++-
T Consensus 165 ~i~~~l~ 171 (217)
T COG1392 165 DIQRELL 171 (217)
T ss_pred HHHHHHH
Confidence 6655553
No 47
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.41 E-value=1.3e+02 Score=21.00 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 43 KLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVS 76 (144)
Q Consensus 43 ~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvA 76 (144)
-+.+||.++..++++....-.-+++.-+....+.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5778999998887776666555555555444444
No 48
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=37.93 E-value=52 Score=22.46 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=12.4
Q ss_pred CChhHHHHHHHHHHHHHHhhh
Q 039737 16 FNFSLWAKWILGSILSLLLPF 36 (144)
Q Consensus 16 ~~~p~W~~wvlG~il~~~vPf 36 (144)
.....+...++|+++.+++++
T Consensus 54 ~~P~~~lil~l~~~~Gl~lgi 74 (82)
T PF13807_consen 54 VSPKRALILALGLFLGLILGI 74 (82)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 334555566666666666655
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.53 E-value=4.5e+02 Score=28.99 Aligned_cols=100 Identities=22% Similarity=0.214 Sum_probs=63.4
Q ss_pred HhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHH
Q 039737 33 LLPFWKQK-WEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTE 111 (144)
Q Consensus 33 ~vPf~~~k-w~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae 111 (144)
.+++-+++ |+.+..++++.|.+....+.+.|-+-++...+.++++++.+.==.+-+|...=--+|.--++.-.-.+.++
T Consensus 1713 ~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1713 SLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555 89999999999999999999999999999999999999986544444443333333433333333333333
Q ss_pred HHHHh-----HHHHHHhHHHHHHhhh
Q 039737 112 NFIHK-----VDEVKQDINDLEKLVE 132 (144)
Q Consensus 112 ~~I~K-----Veei~~~id~~e~~Ve 132 (144)
...-+ +-.++.+|-+||+.++
T Consensus 1793 ~~a~~~~k~~i~~Learir~LE~~l~ 1818 (1930)
T KOG0161|consen 1793 QAALKGGKKQIAKLEARIRELESELE 1818 (1930)
T ss_pred HhhhhccHHHHHHHHHHHHHHHHHHh
Confidence 22111 2223444555555554
No 50
>PF13755 Sensor_TM1: Sensor N-terminal transmembrane domain
Probab=37.53 E-value=1.2e+02 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 37 WKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVA 69 (144)
Q Consensus 37 ~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VA 69 (144)
..+++..| +..+++....++|-.+++++..+
T Consensus 36 Ln~~R~~L--i~ar~~~L~~qa~liA~al~~~a 66 (79)
T PF13755_consen 36 LNQYRDGL--IDARVESLRTQAELIADALAASA 66 (79)
T ss_pred hhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555544 55666666667777777776654
No 51
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=37.25 E-value=66 Score=25.84 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---cchHHHHHHHHHHHHH
Q 039737 26 LGSILSLLLPFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDH---TKFKDAALFVERVAKE 102 (144)
Q Consensus 26 lG~il~~~vPf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPen---gkLk~aA~~VE~vae~ 102 (144)
+-+.++-++.|..+.|.....+|..+..+-..++.+-..+.+..+-+.-+.++.+ .+++. .||++-...++..-..
T Consensus 17 v~~sVs~L~~fvs~~WR~~~~le~~i~~Ir~a~~~v~~sl~~fl~FArga~~NA~-~~~D~~L~~kL~~qLq~l~ds~qi 95 (159)
T PF08824_consen 17 VESSVSNLMSFVSSNWRSPESLERHINEIRAAVDRVRASLREFLDFARGALANAS-NLSDRNLQAKLRRQLQPLEDSYQI 95 (159)
T ss_dssp HHHHHHHHHHHHCSSTT-CCCHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCHT-TTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHc-cccchhHHHHHHHHHHHHHHHHHH
Confidence 3445555777777777778888888777777777777777777777777777755 57764 3566666666655544
Q ss_pred HHhhHH
Q 039737 103 TAHDAQ 108 (144)
Q Consensus 103 v~~dA~ 108 (144)
+-+--+
T Consensus 96 L~~~~q 101 (159)
T PF08824_consen 96 LLQTSQ 101 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 52
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=35.74 E-value=31 Score=29.23 Aligned_cols=18 Identities=44% Similarity=0.888 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 039737 20 LWAKWILGSILSLLLPFW 37 (144)
Q Consensus 20 ~W~~wvlG~il~~~vPf~ 37 (144)
.|+-|++|.+..++.|-|
T Consensus 167 aWalWi~gF~~Ff~~P~~ 184 (212)
T PF09878_consen 167 AWALWIAGFIGFFLFPQY 184 (212)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 799999999999988854
No 53
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=35.65 E-value=45 Score=28.11 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.4
Q ss_pred hHHHHHHHH-HHHHHHhhhhHHH
Q 039737 19 SLWAKWILG-SILSLLLPFWKQK 40 (144)
Q Consensus 19 p~W~~wvlG-~il~~~vPf~~~k 40 (144)
..|-.|++| +++++++|.|++.
T Consensus 58 ~~~l~~lLgPAtVALAvPLY~~~ 80 (226)
T TIGR00659 58 GGVINDLLGPAVVALAIPLYKQL 80 (226)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhH
Confidence 367788888 5788899999963
No 54
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=35.63 E-value=38 Score=25.70 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=15.6
Q ss_pred CChhHHHHHHHHHHHHHHhhh
Q 039737 16 FNFSLWAKWILGSILSLLLPF 36 (144)
Q Consensus 16 ~~~p~W~~wvlG~il~~~vPf 36 (144)
.|+-.|+.|++|.|=+++=+|
T Consensus 67 Knir~~KmwilGlvgTi~gsl 87 (98)
T PF11166_consen 67 KNIRDIKMWILGLVGTIFGSL 87 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 467889999999877654444
No 55
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=35.49 E-value=1.4e+02 Score=20.10 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhh
Q 039737 24 WILGSILSLLLPF 36 (144)
Q Consensus 24 wvlG~il~~~vPf 36 (144)
.++|+++..++-+
T Consensus 5 ~l~Ga~~Ga~~gl 17 (74)
T PF12732_consen 5 FLAGAAAGAAAGL 17 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3445544444433
No 56
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=33.95 E-value=1.2e+02 Score=26.70 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 039737 24 WILGSILSLLLPFWKQKWEKL 44 (144)
Q Consensus 24 wvlG~il~~~vPf~~~kw~~l 44 (144)
.|||..+ -+|+|++|=.++
T Consensus 84 liLgl~i--g~p~~krkek~~ 102 (279)
T PF07271_consen 84 LILGLAI--GIPIYKRKEKRM 102 (279)
T ss_pred HHHHHhh--cchhhhhhHHHH
Confidence 3444444 359999764333
No 57
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.85 E-value=4.1e+02 Score=24.69 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhCCCC-----cchHHHHHHHHHHHH
Q 039737 35 PFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVA--------EILPDH-----TKFKDAALFVERVAK 101 (144)
Q Consensus 35 Pf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA--------~~lPen-----gkLk~aA~~VE~vae 101 (144)
-.|......|..|+.+-....+.....-.-=-.+-+...++-..+- .+||+- .-+..+...|+++++
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~ 458 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSD 458 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555444433333332222222333333333332 468875 357777788888888
Q ss_pred HHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhhHHHHH
Q 039737 102 ETAHDAQLTENFIHKVDEVKQDINDLEKLVEPVVDKF 138 (144)
Q Consensus 102 ~v~~dA~~ae~~I~KVeei~~~id~~e~~Vepvid~~ 138 (144)
...+--=..+.+=+.++.++.+++.|...++-+|+..
T Consensus 459 ~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A 495 (560)
T PF06160_consen 459 ELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNA 495 (560)
T ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666677888888888888888888888888765
No 58
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=32.24 E-value=2.3e+02 Score=21.62 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCCc-chHHHHHHHHHHHHHHHh
Q 039737 73 ENVSAEVAEILPDHT-KFKDAALFVERVAKETAH 105 (144)
Q Consensus 73 EKvAeevA~~lPeng-kLk~aA~~VE~vae~v~~ 105 (144)
.|-=+.+.++||+-| +=..=...|..+.++-..
T Consensus 82 akqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~ 115 (144)
T PF11221_consen 82 AKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEE 115 (144)
T ss_dssp HHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344566789999954 222333344444444333
No 59
>PF05802 EspB: Enterobacterial EspB protein
Probab=31.57 E-value=3.9e+02 Score=24.06 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 039737 90 KDAALFVERVAKETAHDAQLTENFIHKVDEVK 121 (144)
Q Consensus 90 k~aA~~VE~vae~v~~dA~~ae~~I~KVeei~ 121 (144)
+++..++|.+|+... .+.+.-.|..-|+.+.
T Consensus 196 ~~as~~ae~~A~Aa~-k~~~~~~~~~~~~~~~ 226 (317)
T PF05802_consen 196 QKASQLAEQAADAAQ-KASRLSRFLAAVDKIT 226 (317)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHhhhc
Confidence 345555555554433 3444555666666554
No 60
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=30.62 E-value=2.3e+02 Score=21.11 Aligned_cols=27 Identities=30% Similarity=0.291 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 039737 59 EKAAEVVEKVATVAENVSAEVAEILPD 85 (144)
Q Consensus 59 E~vaEvVE~VAe~tEKvAeevA~~lPe 85 (144)
.++.......+..+|..|+++|+.|-+
T Consensus 95 ~~l~~~L~~~~~e~eeeSe~lae~fl~ 121 (150)
T PF07200_consen 95 DALLARLQAAASEAEEESEELAEEFLD 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-S-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444555555666666666666654
No 61
>PRK07598 RNA polymerase sigma factor SigC; Validated
Probab=30.38 E-value=1e+02 Score=28.11 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=15.3
Q ss_pred CCCCChhHHHH-HHHHHHHHHH
Q 039737 13 PSKFNFSLWAK-WILGSILSLL 33 (144)
Q Consensus 13 ~~~~~~p~W~~-wvlG~il~~~ 33 (144)
.+++.|++|+. ||-|+|...+
T Consensus 223 ~rG~rFSTYa~wwIRqaI~r~i 244 (415)
T PRK07598 223 TKGYRFSTYAYWWIRQGITRAI 244 (415)
T ss_pred ccCCCHHHHHHHHHHHHHHHHH
Confidence 35678999997 6777776654
No 62
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=29.89 E-value=4e+02 Score=23.69 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 039737 41 WEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVD 118 (144)
Q Consensus 41 w~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVe 118 (144)
..+|..++.+.+.=|+.+--+++.+|-+|-. ||-.|.-+..++..+-.+++.=-+..+.+.++.+
T Consensus 44 ~~~l~~lq~~L~~kI~IvspAIDLIel~aaR-------------GNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e 108 (302)
T PF05508_consen 44 RKELEKLQRRLESKIKIVSPAIDLIELIAAR-------------GNTSLESALPLTKDLRREIDSFDERLEEAAEKEE 108 (302)
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHhc-------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4788888889888888899999999877643 8899999999998888888877777777776544
No 63
>PRK10337 sensor protein QseC; Provisional
Probab=29.88 E-value=3.3e+02 Score=22.75 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 039737 37 WKQKWEKLKQIEGEAE 52 (144)
Q Consensus 37 ~~~kw~~l~~ie~evE 52 (144)
.++...+|.++...++
T Consensus 182 ~~~~~~pl~~l~~~~~ 197 (449)
T PRK10337 182 LGRELAPLKKLALALR 197 (449)
T ss_pred HHhhhchHHHHHHHHH
Confidence 4455567776665543
No 64
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.79 E-value=5e+02 Score=24.74 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 039737 21 WAKWILGSILSLLLP--FWKQKWEKLKQIEGE 50 (144)
Q Consensus 21 W~~wvlG~il~~~vP--f~~~kw~~l~~ie~e 50 (144)
+.-|.+-.++.+++- || ..|.++..++.+
T Consensus 324 ~~~~~~~l~~~~~~g~~~~-~~~q~~~~~~~~ 354 (656)
T PRK06975 324 AALWFVVVVLACAAAVGGY-ALNRKVDRLDQE 354 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444554444444443 34 334556655533
No 65
>PHA00735 hypothetical protein
Probab=29.52 E-value=52 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=21.8
Q ss_pred CCCCCCCCCh--h-HHHHHHHHHHHHHHhhhhH
Q 039737 9 PTPAPSKFNF--S-LWAKWILGSILSLLLPFWK 38 (144)
Q Consensus 9 p~p~~~~~~~--p-~W~~wvlG~il~~~vPf~~ 38 (144)
-+|.++-.+| + +| .|++|+++..++-...
T Consensus 722 IsPnSsLYnFs~~QpW-a~iiGivv~~i~~llG 753 (808)
T PHA00735 722 ISPNSSLYNFSAYQPW-ATIIGIVVTVVVALLG 753 (808)
T ss_pred CCCccccccccCCCcH-HHHHHHHHHHHHHHhh
Confidence 3577776555 3 99 8999999997776655
No 66
>PHA02845 hypothetical protein; Provisional
Probab=29.37 E-value=91 Score=23.39 Aligned_cols=32 Identities=9% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHhHHHHHHhhhhHHHHHHhh
Q 039737 110 TENFIHKVDEVKQDINDLEKLVEPVVDKFVEE 141 (144)
Q Consensus 110 ae~~I~KVeei~~~id~~e~~Vepvid~~~k~ 141 (144)
||-+++|+..++.+-..=|.++|-+|+.++.+
T Consensus 2 aeVL~~Kl~sIe~~N~~nek~LDcIi~~iE~~ 33 (91)
T PHA02845 2 AEVLFSKLKSIERENLLNESILDCIINEIENN 33 (91)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 57789999999887776788999999988765
No 67
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=29.00 E-value=2.1e+02 Score=23.31 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=17.4
Q ss_pred HHHHHh-HHHHHHhHHHHHHhhhhHHHHH
Q 039737 111 ENFIHK-VDEVKQDINDLEKLVEPVVDKF 138 (144)
Q Consensus 111 e~~I~K-Veei~~~id~~e~~Vepvid~~ 138 (144)
...+.- |++++++|..|+-+++.++..+
T Consensus 110 ~qes~~~veel~eqV~el~~i~emv~~d~ 138 (157)
T COG3352 110 PQESRGIVEELEEQVNELKMIVEMVIKDL 138 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444 6777777777777777666543
No 68
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=28.95 E-value=2.1e+02 Score=20.11 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHH
Q 039737 19 SLWAKWILGSILS 31 (144)
Q Consensus 19 p~W~~wvlG~il~ 31 (144)
+.|+-..++.++|
T Consensus 13 G~fA~LFv~Ll~y 25 (71)
T PF10960_consen 13 GIFAVLFVWLLFY 25 (71)
T ss_pred CcHHHHHHHHHHH
Confidence 4565544444443
No 69
>PHA02818 hypothetical protein; Provisional
Probab=28.07 E-value=85 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHHHhHHHHHHhhhhHHHHHHhhh
Q 039737 110 TENFIHKVDEVKQDINDLEKLVEPVVDKFVEEE 142 (144)
Q Consensus 110 ae~~I~KVeei~~~id~~e~~Vepvid~~~k~~ 142 (144)
||-++.|++.++.+=.-=|.+++=+|++++++.
T Consensus 2 aEVL~~KL~~I~~eN~~NEKflDcII~eie~~~ 34 (92)
T PHA02818 2 AEILTNKLKSIDNENKYNEKFIECIIQEIEKQQ 34 (92)
T ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHccC
Confidence 678899999988776556899999999997653
No 70
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=28.03 E-value=3.4e+02 Score=22.32 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 039737 41 WEKLKQIEGEAEM 53 (144)
Q Consensus 41 w~~l~~ie~evE~ 53 (144)
-.|+.++.+.+..
T Consensus 189 ~~pl~~l~~~~~~ 201 (457)
T TIGR01386 189 LEPLRRLSAVAAR 201 (457)
T ss_pred hhHHHHHHHHHHH
Confidence 3566666544433
No 71
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=27.34 E-value=5.8e+02 Score=24.71 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHhhhhHHHHHHh
Q 039737 118 DEVKQDINDLEKLVEPVVDKFVE 140 (144)
Q Consensus 118 eei~~~id~~e~~Vepvid~~~k 140 (144)
++.+.+..+||+.|+|||.++-.
T Consensus 621 Ee~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 621 EEFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666677899999999999843
No 72
>COG5490 Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=2.1e+02 Score=23.42 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 039737 49 GEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFV 96 (144)
Q Consensus 49 ~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~V 96 (144)
-....+-..+|...+-+-++++.+-|.++++.+ |.+.+..+|.+.|
T Consensus 109 lQTafark~~Eaaveqa~~~qe~arks~~es~k--plk~r~e~Ame~i 154 (158)
T COG5490 109 LQTAFARKSFEAAVEQAKEVQELARKSAEESIK--PLKARIEKAMEEI 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHH
Confidence 334444455666677777888888888888875 4455666665554
No 73
>TIGR01673 holin_LLH phage holin, LL-H family. This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes.
Probab=27.22 E-value=2.7e+02 Score=20.88 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcchHHHHHHHH
Q 039737 58 VEKAAEVVEKVATVAENVSAEVAEILPD-HTKFKDAALFVE 97 (144)
Q Consensus 58 vE~vaEvVE~VAe~tEKvAeevA~~lPe-ngkLk~aA~~VE 97 (144)
.+..+.+.+.+|..+-..++.+...-++ ..||..|...|-
T Consensus 37 g~~~~k~~~~lak~Av~aVeq~~~~~~~G~~K~~~A~~~v~ 77 (108)
T TIGR01673 37 GDKLAKALDKLAKQAVSAVQQNFNESGGGAEKLEQAFNYIT 77 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3444566666776666666666754442 245555544443
No 74
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=26.84 E-value=1.1e+02 Score=22.41 Aligned_cols=33 Identities=27% Similarity=0.697 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCh-hHHHHHHHHHHHHHHhhhhHHH
Q 039737 7 PAPTPAPSKFNF-SLWAKWILGSILSLLLPFWKQK 40 (144)
Q Consensus 7 ~~p~p~~~~~~~-p~W~~wvlG~il~~~vPf~~~k 40 (144)
..+.|+++.+.+ -.| ..+-++.+-+++||.++.
T Consensus 15 ~s~s~~~~~~~~~~~~-~~~~~~aINL~LPFiNG~ 48 (77)
T PF08219_consen 15 ESPSPSSSSSSFITIW-SILRSAAINLVLPFINGM 48 (77)
T ss_pred cCCCCCcCCcchhHHH-HHHHHhhhhhhhhhhhhh
Confidence 344455444444 344 566677788899999864
No 75
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=25.71 E-value=1.4e+02 Score=23.55 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 039737 46 QIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHT 87 (144)
Q Consensus 46 ~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPeng 87 (144)
+|++++|.+++.-|.-..-+|.+-++++|+=--....-|..|
T Consensus 34 ~VK~~ve~~i~~~~~q~~LL~~AL~v~~kiP~~~~~~~~~~~ 75 (132)
T PF10360_consen 34 TVKGQVEEAIDPNEAQRNLLENALSVFDKIPISANGGNPFIG 75 (132)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCCCCCCCcCC
Confidence 467788888777666777788888887777444443333333
No 76
>PRK10574 putative major pilin subunit; Provisional
Probab=25.70 E-value=2.4e+02 Score=21.91 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=19.7
Q ss_pred CCChhHH--HHHHHHHHHHHHhhhhHHHHHH
Q 039737 15 KFNFSLW--AKWILGSILSLLLPFWKQKWEK 43 (144)
Q Consensus 15 ~~~~p~W--~~wvlG~il~~~vPf~~~kw~~ 43 (144)
.|++-.. .--|+|.+.++++|.|.++..+
T Consensus 6 GFTLIELmIViaIigILaaiaiP~~~~~~~~ 36 (146)
T PRK10574 6 GFTLIELMVVIAIIAILSAIGIPAYQNYLQK 36 (146)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555322 3457888889999999876543
No 77
>PLN02678 seryl-tRNA synthetase
Probab=25.63 E-value=2.3e+02 Score=26.02 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=19.9
Q ss_pred HHHHHHHhHHHHHHhHHHHHHhhhhHHHHHH
Q 039737 109 LTENFIHKVDEVKQDINDLEKLVEPVVDKFV 139 (144)
Q Consensus 109 ~ae~~I~KVeei~~~id~~e~~Vepvid~~~ 139 (144)
.+++++.++.++++++..++....-+-+++.
T Consensus 72 ~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 72 DATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777666666655553
No 78
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.44 E-value=36 Score=23.23 Aligned_cols=9 Identities=56% Similarity=1.963 Sum_probs=6.5
Q ss_pred hh-hHHHHHH
Q 039737 35 PF-WKQKWEK 43 (144)
Q Consensus 35 Pf-~~~kw~~ 43 (144)
|| |++||.+
T Consensus 21 PFsWRkKW~~ 30 (54)
T COG4338 21 PFSWRKKWAR 30 (54)
T ss_pred chHHHHHHHH
Confidence 66 8888863
No 79
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.06 E-value=5.9e+02 Score=24.06 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 039737 63 EVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAK 101 (144)
Q Consensus 63 EvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae 101 (144)
+-++...+..+.--....+.||...++...-..|+.|-+
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 334444444444444556788876777777666666655
No 80
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=24.82 E-value=2.2e+02 Score=18.98 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHH
Q 039737 64 VVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDIN 125 (144)
Q Consensus 64 vVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id 125 (144)
.+.++|.-.+.--.++....|.-+..+-++..-=++|.+.-+--...+...+ ++.+++.+.
T Consensus 22 ~l~~~a~~i~~~i~~~~~~~~~~~~~~~~vlaaLnla~e~~~~~~~~~~~~~-~~~l~~~i~ 82 (89)
T PF05164_consen 22 YLRKAAELINEKINEIKKKYPKLSPERLAVLAALNLADELLKLKRELDELEE-LERLEERIE 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHH
Confidence 3566777777777778888998777777777666676666554444444433 333344333
No 81
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.12 E-value=2.9e+02 Score=20.15 Aligned_cols=56 Identities=7% Similarity=0.223 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHH
Q 039737 43 KLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTEN 112 (144)
Q Consensus 43 ~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~ 112 (144)
++.+++.+.+. .+..+..-++....+...++. -+++.....+.......+.+....
T Consensus 26 ~i~~L~a~n~~-------q~~tI~qq~~~~~~L~~~~~~-------~r~~~~~~~~~~qq~r~~~e~~~e 81 (110)
T PF10828_consen 26 RIDRLRAENKA-------QAQTIQQQEDANQELKAQLQQ-------NRQAVEEQQKREQQLRQQSEERRE 81 (110)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556555433 344455555555555444442 266666666666666655554444
No 82
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=23.86 E-value=4e+02 Score=21.70 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 039737 72 AENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQ 122 (144)
Q Consensus 72 tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~ 122 (144)
...+++.+++.. +.+++.......++...+...+....+++.+..+..
T Consensus 176 l~~l~~~l~~~~---~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~ 223 (291)
T TIGR00996 176 LAQLTAALNARD---GDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTA 223 (291)
T ss_pred HHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444444332 345555555555555555555555555555555433
No 83
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.68 E-value=3.5e+02 Score=20.89 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=20.2
Q ss_pred HHHhHHHHHHhHHHHHHhhhhHHHHHHhh
Q 039737 113 FIHKVDEVKQDINDLEKLVEPVVDKFVEE 141 (144)
Q Consensus 113 ~I~KVeei~~~id~~e~~Vepvid~~~k~ 141 (144)
.|.||++++..+...-..++-++.-++.-
T Consensus 85 ~L~kv~els~~L~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 85 QLEKVNELSQQLSRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888887777777777666665543
No 84
>PF08639 SLD3: DNA replication regulator SLD3; InterPro: IPR013948 The SLD3 DNA replication regulator is required for loading and maintenance of Cdc45 on chromatin during DNA replication [].
Probab=23.61 E-value=52 Score=30.13 Aligned_cols=19 Identities=11% Similarity=0.433 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhHHHH
Q 039737 23 KWILGSILSLLLPFWKQKW 41 (144)
Q Consensus 23 ~wvlG~il~~~vPf~~~kw 41 (144)
-|+.|+..++++|||..+.
T Consensus 260 d~l~~Fc~~VIiPyf~~rL 278 (497)
T PF08639_consen 260 DSLRGFCTYVIIPYFSKRL 278 (497)
T ss_pred cHHHHHHHHHHHHHHhhhc
Confidence 5688999999999999654
No 85
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=23.43 E-value=2.4e+02 Score=19.37 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039737 18 FSLWAKWILGSILSLLLPFWKQKWEKLKQIEGEA 51 (144)
Q Consensus 18 ~p~W~~wvlG~il~~~vPf~~~kw~~l~~ie~ev 51 (144)
+|.+.-.+++.+++..++|+= ++++.+++
T Consensus 30 ~p~~~~~l~A~vis~~lS~~l-----l~~~R~~~ 58 (69)
T PF14012_consen 30 VPLLVAALLALVISMPLSYVL-----LRRLRDRA 58 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 566678889999999888864 56666665
No 86
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.37 E-value=2.9e+02 Score=24.77 Aligned_cols=31 Identities=29% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHhHHHHHHhhhhHHHHHHh
Q 039737 110 TENFIHKVDEVKQDINDLEKLVEPVVDKFVE 140 (144)
Q Consensus 110 ae~~I~KVeei~~~id~~e~~Vepvid~~~k 140 (144)
++.+++++.++++++.+++.....+-+++..
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777776666665543
No 87
>PRK08808 general secretion pathway protein J; Validated
Probab=23.27 E-value=3.3e+02 Score=22.47 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039737 22 AKWILGSILSLLLPFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILP 84 (144)
Q Consensus 22 ~~wvlG~il~~~vPf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lP 84 (144)
+--|+|.+.+++.|.|.+.|..-.+-+..++ -.+.+...-.-+..++...+|
T Consensus 17 a~ai~~il~~~a~~s~~~~~~~~~r~~~~~~-----------~~~~~~~~~~~l~~~l~~~~~ 68 (211)
T PRK08808 17 ATVLLVGGLALAFATLRSASAVSQRGEAIAQ-----------RSERMRAVEEFLRRRLAGALP 68 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777889999987755444443332 234444444455555555554
No 88
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.01 E-value=4.2e+02 Score=21.58 Aligned_cols=88 Identities=15% Similarity=0.257 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhh-HHHHHHH
Q 039737 35 PFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHD-AQLTENF 113 (144)
Q Consensus 35 Pf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~d-A~~ae~~ 113 (144)
-|.-++-..+..|++..++ .+++=++..-..+..--|+...-..-+|+-.+|--|...|+.++.-|-+. -+...+|
T Consensus 74 ~f~~Q~~~tmeel~~~~~~---~~~~k~~~LasLaDsf~K~vaaskr~lPets~LavA~~vl~~l~~fv~e~~P~h~~af 150 (165)
T PF08822_consen 74 DFVVQYQATMEELKENEDM---PPQEKVELLASLADSFSKMVAASKRVLPETSELAVAMEVLELLAAFVQERYPQHLAAF 150 (165)
T ss_pred HHHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444444555566533222 23344556666777777777777889999999999999999999887654 4888888
Q ss_pred HHhHHHHHHhHH
Q 039737 114 IHKVDEVKQDIN 125 (144)
Q Consensus 114 I~KVeei~~~id 125 (144)
++=++.+-+.++
T Consensus 151 ~eiLepFg~~l~ 162 (165)
T PF08822_consen 151 LEILEPFGEELE 162 (165)
T ss_pred HHHHHHHHHHHH
Confidence 888888777554
No 89
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=22.81 E-value=3.1e+02 Score=22.88 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 039737 41 WEKLKQIEGEA 51 (144)
Q Consensus 41 w~~l~~ie~ev 51 (144)
|.....++.++
T Consensus 64 ~~~~~~~~~~~ 74 (285)
T TIGR00782 64 WSSRSQVEEEI 74 (285)
T ss_pred cCHHHHHHHHH
Confidence 55555666555
No 90
>PHA02649 hypothetical protein; Provisional
Probab=22.71 E-value=1.3e+02 Score=22.71 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHhHHHHHHhhhhHHHHHHhhh
Q 039737 110 TENFIHKVDEVKQDINDLEKLVEPVVDKFVEEE 142 (144)
Q Consensus 110 ae~~I~KVeei~~~id~~e~~Vepvid~~~k~~ 142 (144)
||-++.|++.++.+=.-=|.+++=+|++++.+.
T Consensus 2 aEVL~~KL~~I~~eN~~NEK~lDcII~eie~~~ 34 (95)
T PHA02649 2 AEVLINKLRNIELDNYGNEKIIDCIIYEIENTQ 34 (95)
T ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcC
Confidence 578899999988765556899999999988763
No 91
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=22.56 E-value=1.2e+02 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhHHHHHHhHHHHHHhhhhH
Q 039737 106 DAQLTENFIHKVDEVKQDINDLEKLVEPV 134 (144)
Q Consensus 106 dA~~ae~~I~KVeei~~~id~~e~~Vepv 134 (144)
.-+.+|+++++|++++.+++ ..++++
T Consensus 87 kv~~~E~L~d~v~eLkeel~---~el~~l 112 (146)
T PF05852_consen 87 KVEDLEKLTDRVEELKEELE---FELERL 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34567889999999999666 666665
No 92
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.45 E-value=7.6e+02 Score=24.40 Aligned_cols=89 Identities=17% Similarity=0.311 Sum_probs=49.9
Q ss_pred HHHHhhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhH
Q 039737 30 LSLLLPFWK-QKWEKLKQIEGEAEM-VIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDA 107 (144)
Q Consensus 30 l~~~vPf~~-~kw~~l~~ie~evE~-vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA 107 (144)
+..+.+||- +....=|.|.+++|. .+..=++....-+++-..+++|+++|- +.+..++.++..-....
T Consensus 36 L~~ls~~~~eN~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~----------km~~t~~~l~s~ls~~k 105 (655)
T KOG3758|consen 36 LRALSTFFEENSLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVE----------KMANTCDKLKSNLSTSK 105 (655)
T ss_pred HHHHHHHHHhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhcc
Confidence 444566654 222222233333332 133334444445555555555555442 44566677777777777
Q ss_pred HHHHHHHHhHHHHHHhHHHHH
Q 039737 108 QLTENFIHKVDEVKQDINDLE 128 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e 128 (144)
..+.++|+|.+.++.+-+.+|
T Consensus 106 ~~t~dli~~t~~l~~e~~~le 126 (655)
T KOG3758|consen 106 ATTQDLIQKTETLKEEAAQLE 126 (655)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877766554
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.41 E-value=9e+02 Score=25.20 Aligned_cols=86 Identities=8% Similarity=0.129 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 039737 42 EKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVK 121 (144)
Q Consensus 42 ~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~ 121 (144)
.++..|+.++...-+......+-+..+....+.+..+ ...||...-|+.+...+......++.-...++..-++++...
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e-~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~ 820 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADE-LAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAA 820 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666555555555555556666666666666 459999999988888777776666555555555555555555
Q ss_pred HhHHHHH
Q 039737 122 QDINDLE 128 (144)
Q Consensus 122 ~~id~~e 128 (144)
.++.+.+
T Consensus 821 ~~~~~a~ 827 (1353)
T TIGR02680 821 AAWKQAR 827 (1353)
T ss_pred HHHHHHH
Confidence 5444333
No 94
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=22.25 E-value=3.6e+02 Score=20.53 Aligned_cols=21 Identities=5% Similarity=0.351 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHhHHHHH
Q 039737 108 QLTENFIHKVDEVKQDINDLE 128 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e 128 (144)
+..+-|.+-+..|.+.+|.+|
T Consensus 81 ktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 81 KTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 344566666777777777554
No 95
>PHA02819 hypothetical protein; Provisional
Probab=22.14 E-value=1.4e+02 Score=21.48 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=18.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhh
Q 039737 10 TPAPSKFNFSLWAKWILGSILSLLLPF 36 (144)
Q Consensus 10 ~p~~~~~~~p~W~~wvlG~il~~~vPf 36 (144)
.|+++.++..+|..|+++.+..+++-|
T Consensus 35 s~~~~~~~~~~~~~~ii~l~~~~~~~~ 61 (71)
T PHA02819 35 NYNKKTKKSFLRYYLIIGLVTIVFVII 61 (71)
T ss_pred CCcccccCChhHHHHHHHHHHHHHHHH
Confidence 455566666788888888666655544
No 96
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=22.04 E-value=3.6e+02 Score=21.98 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhh
Q 039737 90 KDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVEP 133 (144)
Q Consensus 90 k~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Vep 133 (144)
++...+.+.|-+-+.+.-.+++++-.+++.... +.+||.+--|
T Consensus 55 ~~L~~Rk~~il~~i~eqgkLt~eL~~~I~~a~t-l~elEdlY~P 97 (193)
T PF09371_consen 55 RELEKRKESILKSIEEQGKLTPELKQAIENATT-LQELEDLYLP 97 (193)
T ss_dssp HHHHHHHHHHHHHHHHTT---HHHHHHHHH--S-HHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHcccCCHHHHHHHHhcCC-HHHHHHHHhh
Confidence 333344444444445555556666666655543 5556655544
No 97
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=21.91 E-value=99 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHhhh--hHHHHH
Q 039737 16 FNFSLWAKWILGSILSLLLPF--WKQKWE 42 (144)
Q Consensus 16 ~~~p~W~~wvlG~il~~~vPf--~~~kw~ 42 (144)
.+.-.|.-...||++.+.|.| ||.|+|
T Consensus 197 DPSLiWvmistGg~IvltLTYVGwRKYkg 225 (233)
T TIGR02878 197 DPSLLWVMISTGGIIVATLTYVGWRKYKG 225 (233)
T ss_pred CcHHHHHHHHhhHHHHHHHhhhhhhhhhh
Confidence 345678888899999999999 665554
No 98
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=21.87 E-value=4.8e+02 Score=21.90 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=15.3
Q ss_pred HHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 039737 78 EVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHK 116 (144)
Q Consensus 78 evA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~K 116 (144)
..++.+|+ |-..+.||++-+++-|+++=+.+++
T Consensus 43 ~a~~~iPD------ArdRL~YVi~~TEqAA~rtLnaVE~ 75 (214)
T PRK11166 43 EAAEAIPD------ARDRLDYVAQMTEQAAERVLNAVEA 75 (214)
T ss_pred HHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 3444444444444444444444444
No 99
>PHA02844 putative transmembrane protein; Provisional
Probab=21.72 E-value=1.4e+02 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=17.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhh
Q 039737 10 TPAPSKFNFSLWAKWILGSILSLLLPF 36 (144)
Q Consensus 10 ~p~~~~~~~p~W~~wvlG~il~~~vPf 36 (144)
.|+++.++...|..|++..+..+++-+
T Consensus 37 s~~~~~~~~~~~~~~ii~i~~v~~~~~ 63 (75)
T PHA02844 37 GVNKNNVCSSSTKIWILTIIFVVFATF 63 (75)
T ss_pred CccccccCChhHHHHHHHHHHHHHHHH
Confidence 355555666788889888666555444
No 100
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.54 E-value=3.9e+02 Score=20.68 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 039737 22 AKWILGSILS 31 (144)
Q Consensus 22 ~~wvlG~il~ 31 (144)
.-|+.|.=.|
T Consensus 21 qIWLAGLGA~ 30 (132)
T PF05597_consen 21 QIWLAGLGAY 30 (132)
T ss_pred HHHHHHhhHH
Confidence 4456554444
No 101
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.50 E-value=2.3e+02 Score=18.14 Aligned_cols=32 Identities=19% Similarity=0.456 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHH
Q 039737 23 KWILGSILSLLLPFWK--QKWEKLKQIEGEAEMV 54 (144)
Q Consensus 23 ~wvlG~il~~~vPf~~--~kw~~l~~ie~evE~v 54 (144)
-.++|+++..++.+++ +...++++++.+++..
T Consensus 27 ~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~l 60 (68)
T PF06305_consen 27 AFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKL 60 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665544433 2234567777776543
No 102
>PRK02224 chromosome segregation protein; Provisional
Probab=21.21 E-value=7.2e+02 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHhHHHHH
Q 039737 110 TENFIHKVDEVKQDINDLE 128 (144)
Q Consensus 110 ae~~I~KVeei~~~id~~e 128 (144)
+.++-.++.+++.++..++
T Consensus 574 ~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 574 VAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 103
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=21.08 E-value=1.5e+02 Score=25.66 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=37.2
Q ss_pred hhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhH
Q 039737 81 EILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDI 124 (144)
Q Consensus 81 ~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~i 124 (144)
|++|+.+..+..-.+..+..+.--...+..+++|++.-+..++.
T Consensus 117 dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 117 DHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred CCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 78999998999999999998877777788888888887777765
No 104
>PLN02320 seryl-tRNA synthetase
Probab=21.08 E-value=3.1e+02 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHHHHHHHHh--hHHHHHHHHHhHHHHHHhHHHHHHhhhhHHHHHHh
Q 039737 95 FVERVAKETAH--DAQLTENFIHKVDEVKQDINDLEKLVEPVVDKFVE 140 (144)
Q Consensus 95 ~VE~vae~v~~--dA~~ae~~I~KVeei~~~id~~e~~Vepvid~~~k 140 (144)
....+++.+.. +...++.++..+.++++++..||..+..+-+++..
T Consensus 115 ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 115 ERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555532 22346788889999999999999988888777754
No 105
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=20.40 E-value=1.2e+02 Score=30.22 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=27.8
Q ss_pred CCCCCCCCChh--HHHHHHHHHHHHHHhhhhHHHHH
Q 039737 9 PTPAPSKFNFS--LWAKWILGSILSLLLPFWKQKWE 42 (144)
Q Consensus 9 p~p~~~~~~~p--~W~~wvlG~il~~~vPf~~~kw~ 42 (144)
.+|+.--+++| +|.-|+||.+..+++.|..+.++
T Consensus 59 ~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~ 94 (761)
T KOG2262|consen 59 TVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFS 94 (761)
T ss_pred ecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhc
Confidence 46666666675 88999999999999999998754
No 106
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=20.21 E-value=1.4e+02 Score=21.92 Aligned_cols=33 Identities=12% Similarity=0.333 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHHHhHHHHHHhhhhHHHHHHhhh
Q 039737 110 TENFIHKVDEVKQDINDLEKLVEPVVDKFVEEE 142 (144)
Q Consensus 110 ae~~I~KVeei~~~id~~e~~Vepvid~~~k~~ 142 (144)
++-+..|+..++++-..=|+++|=+|+.++++.
T Consensus 1 a~vL~~kl~~I~~~n~~nek~lD~Ii~~ie~~~ 33 (87)
T PF05803_consen 1 AEVLLSKLRSIENRNKANEKFLDCIINEIENQR 33 (87)
T ss_pred ChHHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 356788999888876666899999999987764
Done!