Query 039737
Match_columns 144
No_of_seqs 46 out of 48
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 22:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zx6_A HAMP, methyl-accepting 82.9 18 0.0006 29.5 13.1 31 102-132 123-153 (341)
2 3g67_A Methyl-accepting chemot 69.2 32 0.0011 27.0 8.8 60 57-116 78-141 (213)
3 3c98_B Syntaxin-1A; protein co 68.1 34 0.0012 25.4 9.5 66 59-124 50-115 (279)
4 3ci9_A Heat shock factor-bindi 66.6 15 0.00051 23.4 5.2 42 90-131 5-47 (48)
5 2olt_A Hypothetical protein; s 64.8 42 0.0014 25.2 11.6 69 61-129 89-178 (227)
6 3zx6_A HAMP, methyl-accepting 59.1 70 0.0024 25.9 15.8 36 43-78 53-88 (341)
7 4b9q_A Chaperone protein DNAK; 50.5 1.1E+02 0.0037 26.8 9.6 64 66-139 540-603 (605)
8 3l39_A Putative PHOU-like phos 49.0 88 0.003 24.0 9.4 88 41-128 62-178 (227)
9 4fla_A Regulation of nuclear P 48.1 74 0.0025 24.0 7.2 68 62-132 78-145 (152)
10 3lof_A Heat shock 70 kDa prote 47.2 50 0.0017 22.6 5.7 25 117-141 61-85 (113)
11 4e81_A Chaperone protein DNAK; 43.8 1.1E+02 0.0038 23.6 9.1 64 66-139 152-215 (219)
12 2r2v_A GCN4 leucine zipper; co 42.0 42 0.0014 20.2 4.0 28 43-70 2-29 (34)
13 2wq1_A General control protein 40.8 37 0.0013 20.3 3.6 24 108-131 7-30 (33)
14 1ud0_A HSC70, 70 kDa heat-shoc 40.4 64 0.0022 21.8 5.4 23 117-139 56-78 (113)
15 1kd8_A GABH AIV, GCN4 acid bas 39.1 40 0.0014 20.5 3.6 24 108-131 8-31 (36)
16 3m48_A General control protein 38.9 38 0.0013 20.3 3.4 24 108-131 7-30 (33)
17 2p32_A Heat shock 70 kDa prote 36.5 86 0.003 21.7 5.7 23 117-139 70-92 (120)
18 3g67_A Methyl-accepting chemot 35.4 1.6E+02 0.0054 23.0 13.5 70 46-121 11-80 (213)
19 3c98_B Syntaxin-1A; protein co 34.9 81 0.0028 23.3 5.6 70 50-120 48-118 (279)
20 1nlw_A MAD protein, MAX dimeri 34.8 1E+02 0.0034 20.7 5.6 38 87-124 40-77 (80)
21 3pk1_B Apoptosis regulator BAX 34.3 51 0.0017 19.9 3.5 28 82-109 2-29 (34)
22 3qfl_A MLA10; coiled-coil, (CC 34.3 1.2E+02 0.0039 21.1 6.2 37 33-69 10-46 (115)
23 3c3f_A Alpha/beta peptide with 33.7 56 0.0019 19.7 3.6 24 108-131 8-31 (34)
24 2hi2_A Fimbrial protein; type 33.5 51 0.0018 23.5 4.1 22 24-45 11-32 (158)
25 2lse_A Four helix bundle prote 39.3 9.1 0.00031 27.5 0.0 41 72-117 12-54 (101)
26 3c3g_A Alpha/beta peptide with 32.9 59 0.002 19.4 3.6 24 108-131 7-30 (33)
27 3hiu_A Uncharacterized protein 32.9 73 0.0025 24.3 5.1 43 90-132 19-61 (166)
28 3ogh_B Protein YCIE; iron-bind 32.7 72 0.0025 24.4 5.1 42 91-132 23-64 (171)
29 2oxj_A Hybrid alpha/beta pepti 31.8 63 0.0021 19.4 3.6 24 108-131 8-31 (34)
30 3sok_A Fimbrial protein; pilus 31.7 61 0.0021 23.4 4.3 22 24-45 11-32 (151)
31 1oqw_A Fimbrial protein; type 31.5 63 0.0022 22.8 4.3 21 24-44 11-31 (144)
32 1kd8_B GABH BLL, GCN4 acid bas 31.4 63 0.0022 19.6 3.6 24 108-131 8-31 (36)
33 1nkp_A C-MYC, MYC proto-oncoge 31.2 1.2E+02 0.0042 20.5 5.8 40 88-127 46-85 (88)
34 2l81_A Enhancer of filamentati 31.0 1.9E+02 0.0066 22.6 7.7 79 26-105 33-114 (176)
35 1wlq_A Geminin; coiled-coil; 2 30.3 1.4E+02 0.0047 21.0 5.8 41 65-105 40-80 (83)
36 1a87_A Colicin N; bacteriocin, 29.5 1.6E+02 0.0055 25.3 7.1 71 26-101 107-186 (321)
37 2wvr_A Geminin; DNA replicatio 29.4 1.2E+02 0.004 24.7 5.9 46 62-107 114-159 (209)
38 3vkg_A Dynein heavy chain, cyt 28.8 6.2E+02 0.021 27.8 13.6 10 75-84 1939-1948(3245)
39 1uo4_A General control protein 28.2 72 0.0025 19.2 3.4 24 108-131 8-31 (34)
40 2bni_A General control protein 25.4 80 0.0027 19.0 3.3 24 108-131 8-31 (34)
41 2dfs_A Myosin-5A; myosin-V, in 24.4 2.5E+02 0.0085 27.0 8.1 8 33-40 893-900 (1080)
42 2w83_C C-JUN-amino-terminal ki 24.3 92 0.0031 21.7 3.9 30 111-140 33-62 (77)
43 2odv_A Plectin 1, HD1; plakin 23.6 2.7E+02 0.0092 21.9 9.1 21 38-58 99-119 (235)
44 3p8c_D Wiskott-aldrich syndrom 23.5 1.7E+02 0.0057 24.4 6.0 47 87-133 36-82 (279)
45 1kmi_Z CHEZ, chemotaxis protei 22.9 2.7E+02 0.0094 21.7 7.7 27 83-109 101-127 (214)
46 2yuf_A NGFI-A-binding protein 22.8 1.2E+02 0.0041 23.3 4.6 44 64-112 14-67 (142)
47 2hy6_A General control protein 22.1 1.3E+02 0.0044 18.0 3.7 25 107-131 7-31 (34)
48 2l5g_B Putative uncharacterize 21.9 1.2E+02 0.004 19.0 3.7 10 113-122 7-16 (42)
49 1nkp_B MAX protein, MYC proto- 21.9 1.7E+02 0.0059 19.0 5.1 34 89-129 42-75 (83)
50 3iq1_A DPS family protein; csg 20.8 2.4E+02 0.0081 20.2 8.4 74 65-141 60-150 (159)
51 3o6x_A Glutamine synthetase; t 20.7 5.3E+02 0.018 24.2 11.3 22 111-132 692-713 (729)
52 1z23_A CRK-associated substrat 20.3 21 0.00073 27.8 -0.0 77 26-103 23-108 (163)
53 3rfu_A Copper efflux ATPase; a 20.2 69 0.0023 29.3 3.3 40 16-55 111-152 (736)
No 1
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=82.94 E-value=18 Score=29.50 Aligned_cols=31 Identities=3% Similarity=0.349 Sum_probs=15.2
Q ss_pred HHHhhHHHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 102 ETAHDAQLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 102 ~v~~dA~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
.+.+-.+..+.+.+.+..+.+..+++..+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~ 153 (341)
T 3zx6_A 123 TAQRGGKVVDNVVQTMRDISTSSQKIADIIS 153 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555555555555554
No 2
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=69.18 E-value=32 Score=27.03 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCc-chHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 039737 57 EVEKAAEVVEKVATVAENVSAEVA---EILPDHT-KFKDAALFVERVAKETAHDAQLTENFIHK 116 (144)
Q Consensus 57 ~vE~vaEvVE~VAe~tEKvAeevA---~~lPeng-kLk~aA~~VE~vae~v~~dA~~ae~~I~K 116 (144)
....+.+.+..+|.-|.=+|=+-+ -.--+.| -+--+|..|..+|+...+-+.....+|+.
T Consensus 78 ~i~~i~~~I~~Ia~qtnlLALNAaIEAAraGe~GrGFaVVA~Evr~La~~t~~~~~~I~~~i~~ 141 (213)
T 3g67_A 78 SIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKARE 141 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666554432 1122233 35566666666666666555555444444
No 3
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=68.13 E-value=34 Score=25.40 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhH
Q 039737 59 EKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDI 124 (144)
Q Consensus 59 E~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~i 124 (144)
+.+...++++...++.++......+-...........++.+...+...++.+...+..++...+..
T Consensus 50 e~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~ 115 (279)
T 3c98_B 50 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 115 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444443332222222223345556677777777777777777776666654443
No 4
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=66.56 E-value=15 Score=23.39 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHHHhHHHHHHhHHHHHHhh
Q 039737 90 KDAALFVERVAKETAHDAQ-LTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 90 k~aA~~VE~vae~v~~dA~-~ae~~I~KVeei~~~id~~e~~V 131 (144)
.+...+|+++-......-+ ....|+.|+|++...||+||+=|
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3455566666655554433 45678999999999999998643
No 5
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=64.77 E-value=42 Score=25.20 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---hCCCC--cchHHHHHHHHHHHH----HHHh------------hHHHHHHHHHhHHH
Q 039737 61 AAEVVEKVATVAENVSAEVAE---ILPDH--TKFKDAALFVERVAK----ETAH------------DAQLTENFIHKVDE 119 (144)
Q Consensus 61 vaEvVE~VAe~tEKvAeevA~---~lPen--gkLk~aA~~VE~vae----~v~~------------dA~~ae~~I~KVee 119 (144)
.+..+|+++..++.+|..+.- .+|+. .-+.+.+..+-..++ .+.. +...+.+.+++|..
T Consensus 89 L~~~lD~I~D~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~l~~l~e~~~~~~~~~~~~~~~~~i~~ 168 (227)
T 2olt_A 89 LLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDI 168 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 345566666666666666653 23442 123333333322222 2221 45666788999999
Q ss_pred HHHhHHHHHH
Q 039737 120 VKQDINDLEK 129 (144)
Q Consensus 120 i~~~id~~e~ 129 (144)
+++++|++..
T Consensus 169 lE~~~D~l~~ 178 (227)
T 2olt_A 169 IEEDTDDLQI 178 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999996554
No 6
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=59.09 E-value=70 Score=25.89 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 43 KLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAE 78 (144)
Q Consensus 43 ~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAee 78 (144)
.+..+.+.+..+...++.+...++.++..++..+..
T Consensus 53 ~i~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~ 88 (341)
T 3zx6_A 53 TVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAAS 88 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555554443
No 7
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=50.49 E-value=1.1e+02 Score=26.79 Aligned_cols=64 Identities=6% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhhHHHHHH
Q 039737 66 EKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVEPVVDKFV 139 (144)
Q Consensus 66 E~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Vepvid~~~ 139 (144)
|...-.+++.-++..+.+++. ...+.-..+..+-+....+ ..+++++.+++|+....|++.++-
T Consensus 540 e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~l~~~~~~~~~~~~ 603 (605)
T 4b9q_A 540 DHLLHSTRKQVEEAGDKLPAD-DKTAIESALTALETALKGE---------DKAAIEAKMQELAQVSQKLMEIAQ 603 (605)
T ss_dssp HHHHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHHHHHSS---------CHHHHHHHHHHHHHHTHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhhhCCHH-HHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555566777653 2233333333333333322 245677777888889999988764
No 8
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=49.01 E-value=88 Score=23.97 Aligned_cols=88 Identities=10% Similarity=0.230 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHHH
Q 039737 41 WEKLKQIEGEAEMVIEEVE-----------------KAAEVVEKVATVAENVSAEVAEILPDH--TKFKDAALFVERVAK 101 (144)
Q Consensus 41 w~~l~~ie~evE~vie~vE-----------------~vaEvVE~VAe~tEKvAeevA~~lPen--gkLk~aA~~VE~vae 101 (144)
..++..+|.+++.+..... ..+...++++..++.+|..+.=.=|+. ..+++.+..+...++
T Consensus 62 ~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~ 141 (227)
T 3l39_A 62 YKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAI 141 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 4566777777776654433 356677888888888888776333332 345555555544444
Q ss_pred HHHh----------hHHHHHHHHHhHHHHHHhHHHHH
Q 039737 102 ETAH----------DAQLTENFIHKVDEVKQDINDLE 128 (144)
Q Consensus 102 ~v~~----------dA~~ae~~I~KVeei~~~id~~e 128 (144)
.+.+ +...+.+.+.+|..++++.|++.
T Consensus 142 ~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l~ 178 (227)
T 3l39_A 142 NIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVY 178 (227)
T ss_dssp HHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 56678889999999999999543
No 9
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=48.10 E-value=74 Score=23.96 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 62 AEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 62 aEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
-+....+++=...++.++.+.=.=-..|+.+-.+.+..-.++.+.++.-..+..+|..+++++| +-++
T Consensus 78 eeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~---~hi~ 145 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK---SHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhh
Confidence 4445556666666666666543333456666667777777888888899999999999999877 5554
No 10
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=47.21 E-value=50 Score=22.55 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHhh
Q 039737 117 VDEVKQDINDLEKLVEPVVDKFVEE 141 (144)
Q Consensus 117 Veei~~~id~~e~~Vepvid~~~k~ 141 (144)
.++++.++++|+.++.||+.++-++
T Consensus 61 ~e~i~~k~~eL~~~~~~i~~k~y~~ 85 (113)
T 3lof_A 61 KDEFEHKRKELEQVCNPIISGLYQG 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888889999999888643
No 11
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=43.77 E-value=1.1e+02 Score=23.65 Aligned_cols=64 Identities=6% Similarity=0.155 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhhHHHHHH
Q 039737 66 EKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVEPVVDKFV 139 (144)
Q Consensus 66 E~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Vepvid~~~ 139 (144)
|...-.+++.-++..+.+|+. -..+.-..+..+-+.++.+ -.++++..+++|+.+..|++...-
T Consensus 152 e~~i~~~~~~l~~~~~~l~~~-~k~~i~~~l~~~~~~L~~~---------~~~~i~~~~~~L~~~~~~i~~~~~ 215 (219)
T 4e81_A 152 DHLLHSTRKQVEEAGDKLPAD-DKTAIESALTALETALKGE---------DKAAIEAKMQELAQVSQKLMEIAQ 215 (219)
T ss_dssp HHHHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHHHHHSS---------CHHHHHHHHHHHHHHTHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhhhCCHH-HHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555667788773 3344444455554555443 234566667777788888876543
No 12
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=41.96 E-value=42 Score=20.20 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 43 KLKQIEGEAEMVIEEVEKAAEVVEKVAT 70 (144)
Q Consensus 43 ~l~~ie~evE~vie~vE~vaEvVE~VAe 70 (144)
++.++++++|.++..-.+.+.-|.++++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567899988887776666655555543
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.77 E-value=37 Score=20.32 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|++..++++++..|..++
T Consensus 7 dKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467788888888888777666554
No 14
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=40.44 E-value=64 Score=21.78 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHH
Q 039737 117 VDEVKQDINDLEKLVEPVVDKFV 139 (144)
Q Consensus 117 Veei~~~id~~e~~Vepvid~~~ 139 (144)
.+++++.+++|+..+.|+..++-
T Consensus 56 ~~~i~~~~~~L~~~~~~i~~~~~ 78 (113)
T 1ud0_A 56 KEEFEHQQKELEKVCNPIITKLY 78 (113)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888889987764
No 15
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=39.13 E-value=40 Score=20.55 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|++..++++++..|+.++
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467788888888888777666654
No 16
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.85 E-value=38 Score=20.26 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|.+-.++++++..|.+++
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567888888888888777766654
No 17
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=36.49 E-value=86 Score=21.71 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHH
Q 039737 117 VDEVKQDINDLEKLVEPVVDKFV 139 (144)
Q Consensus 117 Veei~~~id~~e~~Vepvid~~~ 139 (144)
.++++..+++|+....|++.++-
T Consensus 70 ~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 70 KEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778888888887663
No 18
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=35.41 E-value=1.6e+02 Score=23.01 Aligned_cols=70 Identities=9% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 039737 46 QIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQLTENFIHKVDEVK 121 (144)
Q Consensus 46 ~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~ 121 (144)
.+...+..+++.+...++-+........+.+.++.+ .+++....++.+.+.+.+-.+....+.++++++.
T Consensus 11 em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (213)
T 3g67_A 11 NLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIME------ELKKSGTNVDQIVERVKEASSQIGETLENIRSIE 80 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333333333344433332 3556666666666666555555555555444443
No 19
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=34.95 E-value=81 Score=23.34 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 039737 50 EAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPD-HTKFKDAALFVERVAKETAHDAQLTENFIHKVDEV 120 (144)
Q Consensus 50 evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPe-ngkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei 120 (144)
+++.+-...+.+...+++++....++.... +...+ ...+......|..++..+..-....+.+.++.+.+
T Consensus 48 ~ve~i~~~i~~i~~~v~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i 118 (279)
T 3c98_B 48 QVEEIRGFIDKIAENVEEVKRKHSAILASP-NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 118 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444555555666665555543211 11111 13456666667777777776666666666665544
No 20
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.77 E-value=1e+02 Score=20.68 Aligned_cols=38 Identities=8% Similarity=0.267 Sum_probs=22.8
Q ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhH
Q 039737 87 TKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDI 124 (144)
Q Consensus 87 gkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~i 124 (144)
+-|++|..+|.++-.....-.+..+.+=...+.+.+++
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888877766555544444444444444433
No 21
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=34.30 E-value=51 Score=19.86 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=20.9
Q ss_pred hCCCCcchHHHHHHHHHHHHHHHhhHHH
Q 039737 82 ILPDHTKFKDAALFVERVAKETAHDAQL 109 (144)
Q Consensus 82 ~lPengkLk~aA~~VE~vae~v~~dA~~ 109 (144)
.+|.+-..|+++.-+-.|+++.+.-+++
T Consensus 2 ~~~~Dp~~K~l~~cL~~IgDEld~N~EL 29 (34)
T 3pk1_B 2 PVPQDASTKKLSECLKRIGDELDSNMEL 29 (34)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHcccHHH
Confidence 4688889999999999999999988875
No 22
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=34.26 E-value=1.2e+02 Score=21.07 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=21.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039737 33 LLPFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVA 69 (144)
Q Consensus 33 ~vPf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VA 69 (144)
+.++..+....+..++++++....+.+..-.+..++.
T Consensus 10 L~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~ 46 (115)
T 3qfl_A 10 LGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIG 46 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566677777776666666666665543
No 23
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.73 E-value=56 Score=19.66 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|++-.++++++..|.+++
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467778888777777777666654
No 24
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=33.46 E-value=51 Score=23.49 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 039737 24 WILGSILSLLLPFWKQKWEKLK 45 (144)
Q Consensus 24 wvlG~il~~~vPf~~~kw~~l~ 45 (144)
-|+|.+.++++|.|.++..+-+
T Consensus 11 ~ii~il~~~~~p~~~~~~~~~~ 32 (158)
T 2hi2_A 11 AIVGILAAVALPAYQDYTARAQ 32 (158)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999987655443
No 25
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=39.28 E-value=9.1 Score=27.51 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhHHH--HHHHHHhH
Q 039737 72 AENVSAEVAEILPDHTKFKDAALFVERVAKETAHDAQL--TENFIHKV 117 (144)
Q Consensus 72 tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA~~--ae~~I~KV 117 (144)
.||+-.+|-+--|+ +|-+.||.+|+.|-.+-+. +.++|+|.
T Consensus 12 lekildevtdgapd-----earerieklakdvkdeleegdaknmiekf 54 (101)
T 2lse_A 12 LEKILDEVTDGAPD-----EARERIEKLAKDVKDELEEGDAKNMIEKF 54 (101)
Confidence 34444444444444 3445555555555443332 34455554
No 26
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.89 E-value=59 Score=19.43 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|++=.++++++..|.+++
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567888888888888777776654
No 27
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=32.87 E-value=73 Score=24.26 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 90 KDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 90 k~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
+++...+...++.++.+.++...|-+-+++.+.+++.|+.+.+
T Consensus 19 ~Q~~~aL~~ma~~~a~~peLk~a~e~Hl~eT~~qi~rLe~vf~ 61 (166)
T 3hiu_A 19 KEAETMMAAMASRIEHYPELKRRIEQHVEETQQQSAGVQRCLE 61 (166)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777888888888888888888886666554
No 28
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=32.66 E-value=72 Score=24.44 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhh
Q 039737 91 DAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 91 ~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Ve 132 (144)
++...+...++.++.+.++...|-+-+++.+.+++.|+.+++
T Consensus 23 Q~~~aL~~ma~~~a~~peLk~a~e~Hl~eT~~qi~rLe~vf~ 64 (171)
T 3ogh_B 23 QAESMLESMASRIDNYPELRARIEQHLSETKNQIVQLETILD 64 (171)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666667777777777777777777776655544
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.80 E-value=63 Score=19.44 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|++=+++++++..|.+++
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 467777887777777777766654
No 30
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=31.66 E-value=61 Score=23.37 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 039737 24 WILGSILSLLLPFWKQKWEKLK 45 (144)
Q Consensus 24 wvlG~il~~~vPf~~~kw~~l~ 45 (144)
-|+|.+.++++|.|.++..+.+
T Consensus 11 aIigiLaaia~p~~~~~~~~~~ 32 (151)
T 3sok_A 11 AIIGILAAFAIPAYNDYIARSQ 32 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998665444
No 31
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=31.47 E-value=63 Score=22.84 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 039737 24 WILGSILSLLLPFWKQKWEKL 44 (144)
Q Consensus 24 wvlG~il~~~vPf~~~kw~~l 44 (144)
-|+|.+.++++|.|+++..+-
T Consensus 11 ~Ii~il~~ia~p~~~~~~~~~ 31 (144)
T 1oqw_A 11 AIIGILAAIAIPQYQNYVARS 31 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999998765433
No 32
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.37 E-value=63 Score=19.65 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|++-.++++++..|..++
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 466777777777777666665554
No 33
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.23 E-value=1.2e+02 Score=20.49 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHH
Q 039737 88 KFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDL 127 (144)
Q Consensus 88 kLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~ 127 (144)
-|++|..+|.++-.....-.+..+.+=++-+.+..++.+|
T Consensus 46 iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777777666655555555555555555555543
No 34
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=30.98 E-value=1.9e+02 Score=22.64 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---cchHHHHHHHHHHHHH
Q 039737 26 LGSILSLLLPFWKQKWEKLKQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDH---TKFKDAALFVERVAKE 102 (144)
Q Consensus 26 lG~il~~~vPf~~~kw~~l~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPen---gkLk~aA~~VE~vae~ 102 (144)
+-+.|+-++.|..+.|.....+|..+..+-..++.+-..+.+..+-+.-+.++.. .+++. .||++-...++..-.-
T Consensus 33 v~~sVs~Lm~fvs~~WR~~~~le~~i~~I~~a~~~v~~Sl~efL~FArga~~nA~-~~~d~~L~~kl~rqLq~l~ds~qi 111 (176)
T 2l81_A 33 LEMGVSSLMALVTTDWRCYGYMERHINEIRTAVDKVELFLKEYLHFVKGAVANAA-CLPELILHNKMKRELQRVEDSHQI 111 (176)
T ss_dssp HHHHHHHHHHHCSSCTTCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHHHHhhHHHH
Confidence 4455666888877777777789999888888888888899999999998888866 57774 5677777766665554
Q ss_pred HHh
Q 039737 103 TAH 105 (144)
Q Consensus 103 v~~ 105 (144)
+-+
T Consensus 112 L~~ 114 (176)
T 2l81_A 112 LSQ 114 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 35
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.35 E-value=1.4e+02 Score=21.00 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHh
Q 039737 65 VEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAH 105 (144)
Q Consensus 65 VE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~ 105 (144)
-++.-+..++.-++++..=-+|..|+..|.-+.+.|..+++
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665555677888888888888877654
No 36
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=29.50 E-value=1.6e+02 Score=25.28 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhC---CCC--cchHHHHHHH
Q 039737 26 LGSILSLLLPFWKQKWEKLKQIEGEAEMVIEEVEKAAE----VVEKVATVAENVSAEVAEIL---PDH--TKFKDAALFV 96 (144)
Q Consensus 26 lG~il~~~vPf~~~kw~~l~~ie~evE~vie~vE~vaE----vVE~VAe~tEKvAeevA~~l---Pen--gkLk~aA~~V 96 (144)
+-.+++-++||-+ ..+-..+-+.+.+++|-.+. +-|+..+...++|.++|+.+ =+. .+..+|....
T Consensus 107 vk~~v~~f~~~~~-----~~~~~~Ek~aLkdAse~ia~fy~kIsE~~GeKYk~lAkeIA~~lknfKGKkIRs~dDALksf 181 (321)
T 1a87_A 107 VKRFVSQFLLFRK-----EEKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRNIRSYNEAMASL 181 (321)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCGGGCCCHHHHHHHH
T ss_pred HHHHHHHHhhcCc-----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCHHHHHHHH
Confidence 3345555555543 33344444556666666666 55666778888888888875 321 2244555555
Q ss_pred HHHHH
Q 039737 97 ERVAK 101 (144)
Q Consensus 97 E~vae 101 (144)
|+...
T Consensus 182 EKyk~ 186 (321)
T 1a87_A 182 NKVLA 186 (321)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 55444
No 37
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.36 E-value=1.2e+02 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHhhH
Q 039737 62 AEVVEKVATVAENVSAEVAEILPDHTKFKDAALFVERVAKETAHDA 107 (144)
Q Consensus 62 aEvVE~VAe~tEKvAeevA~~lPengkLk~aA~~VE~vae~v~~dA 107 (144)
.+--++.-+-.++.-++++..==+|..|++.|+.+.|+|..+.+=-
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444666777777777777655667778888888888877776543
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.80 E-value=6.2e+02 Score=27.81 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=3.9
Q ss_pred HHHHHHhhCC
Q 039737 75 VSAEVAEILP 84 (144)
Q Consensus 75 vAeevA~~lP 84 (144)
+-.+++.+=|
T Consensus 1939 l~~~L~~~~~ 1948 (3245)
T 3vkg_A 1939 LQVSLAQKNR 1948 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 39
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=28.20 E-value=72 Score=19.16 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|.+-.++++++..|.+++
T Consensus 8 dKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 577888888888888777666654
No 40
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=25.42 E-value=80 Score=18.98 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 108 QLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 108 ~~ae~~I~KVeei~~~id~~e~~V 131 (144)
+++|.+|.+=.++++++..|.+++
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh
Confidence 577888888888888777666654
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.41 E-value=2.5e+02 Score=27.01 Aligned_cols=8 Identities=13% Similarity=0.226 Sum_probs=3.9
Q ss_pred HhhhhHHH
Q 039737 33 LLPFWKQK 40 (144)
Q Consensus 33 ~vPf~~~k 40 (144)
+-.+||++
T Consensus 893 iQs~~R~~ 900 (1080)
T 2dfs_A 893 LQCCYRRM 900 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455544
No 42
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.29 E-value=92 Score=21.71 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHHhHHHHHHhhhhHHHHHHh
Q 039737 111 ENFIHKVDEVKQDINDLEKLVEPVVDKFVE 140 (144)
Q Consensus 111 e~~I~KVeei~~~id~~e~~Vepvid~~~k 140 (144)
.++|-+||++..+-+.|...++.+.....+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r 62 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLK 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 478999999988877666666665554433
No 43
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=23.60 E-value=2.7e+02 Score=21.89 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039737 38 KQKWEKLKQIEGEAEMVIEEV 58 (144)
Q Consensus 38 ~~kw~~l~~ie~evE~vie~v 58 (144)
.+.|+.|.+.+.+=+..+...
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~e 119 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSE 119 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777776666655543
No 44
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.46 E-value=1.7e+02 Score=24.38 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHHhhhh
Q 039737 87 TKFKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEKLVEP 133 (144)
Q Consensus 87 gkLk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~~Vep 133 (144)
|-||+...+.++.++...+=.+.+..+-+++..+...|+.|+..|..
T Consensus 36 gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 36 NIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45666666666666666666666666666666667666666666643
No 45
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=22.92 E-value=2.7e+02 Score=21.72 Aligned_cols=27 Identities=4% Similarity=0.015 Sum_probs=14.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhHHH
Q 039737 83 LPDHTKFKDAALFVERVAKETAHDAQL 109 (144)
Q Consensus 83 lPengkLk~aA~~VE~vae~v~~dA~~ 109 (144)
.++-+..|..+..+...-..+.+....
T Consensus 101 ~~~~~~~~~l~~~~~~~l~~v~~~~~~ 127 (214)
T 1kmi_Z 101 PIDLADARELVTDTRQFLADVPAHTSF 127 (214)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666665555555555444433
No 46
>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.76 E-value=1.2e+02 Score=23.26 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcch----------HHHHHHHHHHHHHHHhhHHHHHH
Q 039737 64 VVEKVATVAENVSAEVAEILPDHTKF----------KDAALFVERVAKETAHDAQLTEN 112 (144)
Q Consensus 64 vVE~VAe~tEKvAeevA~~lPengkL----------k~aA~~VE~vae~v~~dA~~ae~ 112 (144)
.|..|++.+|.+ +..||.. -. |+.+..|++|-+--+.|.++-+.
T Consensus 14 ~v~~v~e~~erl----~~tlP~~-dp~e~~~~l~~~Kkl~k~l~~i~~m~~~dp~r~~E 67 (142)
T 2yuf_A 14 AALSVAECVERM----APTLPKS-DLNEVKELLKTNKKLAKMIGHIFEMNDDDPHKEEE 67 (142)
T ss_dssp HHHHHHHHHHHH----HHHSCCC-CHHHHHHHHHHCSHHHHHHTHHHHSCSSCHHHHHH
T ss_pred HHHHHHHHHHHH----HhhCCCC-CchHHHHHHHHhHHHHHHHHHHHcCCCCChHHHHH
Confidence 356677777766 6788883 33 34555566666666666665444
No 47
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.13 E-value=1.3e+02 Score=18.03 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHhh
Q 039737 107 AQLTENFIHKVDEVKQDINDLEKLV 131 (144)
Q Consensus 107 A~~ae~~I~KVeei~~~id~~e~~V 131 (144)
.+++|.+|++=.++++++..|..++
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3566677777666666666555544
No 48
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.93 E-value=1.2e+02 Score=18.95 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=3.7
Q ss_pred HHHhHHHHHH
Q 039737 113 FIHKVDEVKQ 122 (144)
Q Consensus 113 ~I~KVeei~~ 122 (144)
+|+|++.+..
T Consensus 7 l~qkI~kVdr 16 (42)
T 2l5g_B 7 LIQNMDRVDR 16 (42)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 49
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.86 E-value=1.7e+02 Score=19.05 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHHHH
Q 039737 89 FKDAALFVERVAKETAHDAQLTENFIHKVDEVKQDINDLEK 129 (144)
Q Consensus 89 Lk~aA~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~e~ 129 (144)
|+.|+.+|.++-..+.. +-+.+++++.+...|+.
T Consensus 42 L~~Ai~YI~~L~~~~~~-------l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHT-------HQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 55666666666554443 33444444544444443
No 50
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=20.83 E-value=2.4e+02 Score=20.20 Aligned_cols=74 Identities=5% Similarity=0.063 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHH--hhCCCCcchHHH---------------HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhHHHH
Q 039737 65 VEKVATVAENVSAEVA--EILPDHTKFKDA---------------ALFVERVAKETAHDAQLTENFIHKVDEVKQDINDL 127 (144)
Q Consensus 65 VE~VAe~tEKvAeevA--~~lPengkLk~a---------------A~~VE~vae~v~~dA~~ae~~I~KVeei~~~id~~ 127 (144)
.++..+.++.+|+.+. +..|. |++++. -+.|+.+.+.-..-......+|.-.++..+. --
T Consensus 60 ~~~~~~~~D~lAERI~~LGg~P~-~t~~~~~~~s~i~e~~~~~~~~eml~~ll~~~~~~i~~~r~~i~~ae~~~D~--~T 136 (159)
T 3iq1_A 60 YTDLQLKIDELAERILTLSARPM-HSFSGYLKAAQIKEHTDSIDGRSSMQGLVDGFSILLHQQRDILELAGETGDE--GT 136 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC-CSHHHHHHHCSSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH--HH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-CCHHHHHHHCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCH--HH
Confidence 3444555555555554 34454 444333 3344444333333333333344333332221 23
Q ss_pred HHhhhhHHHHHHhh
Q 039737 128 EKLVEPVVDKFVEE 141 (144)
Q Consensus 128 e~~Vepvid~~~k~ 141 (144)
..+++-++...+|+
T Consensus 137 ~dll~~~l~~~Ek~ 150 (159)
T 3iq1_A 137 SALMSDYIREQEKL 150 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665553
No 51
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=20.70 E-value=5.3e+02 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHhHHHHHHhhh
Q 039737 111 ENFIHKVDEVKQDINDLEKLVE 132 (144)
Q Consensus 111 e~~I~KVeei~~~id~~e~~Ve 132 (144)
+.++-..+++..-+|.||.+|.
T Consensus 692 ~~v~~~m~~~R~~~D~lE~~v~ 713 (729)
T 3o6x_A 692 ETVRPYLESIRDHIDHLEMEID 713 (729)
T ss_dssp HHTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4555666677777777777664
No 52
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=20.27 E-value=21 Score=27.77 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhh-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---cchHHHHHHH
Q 039737 26 LGSILSLLLPFW-----KQKWEKL-KQIEGEAEMVIEEVEKAAEVVEKVATVAENVSAEVAEILPDH---TKFKDAALFV 96 (144)
Q Consensus 26 lG~il~~~vPf~-----~~kw~~l-~~ie~evE~vie~vE~vaEvVE~VAe~tEKvAeevA~~lPen---gkLk~aA~~V 96 (144)
+-+.|+-++-|. .+.|... ..++..+..+-..++.+-..+.+..+-+.-+.++.. ++++. .||++-...+
T Consensus 23 v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~-~~~d~~L~~kl~r~Lq~l 101 (163)
T 1z23_A 23 VSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSAT-HTSDRTLHAKLSRQLQKM 101 (163)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHHHH
Confidence 344455567776 5567666 778888888777788888888888888887777755 57773 6777777767
Q ss_pred HHHHHHH
Q 039737 97 ERVAKET 103 (144)
Q Consensus 97 E~vae~v 103 (144)
+..-..+
T Consensus 102 ~ds~qiL 108 (163)
T 1z23_A 102 EDVYQTL 108 (163)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 6654433
No 53
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=20.15 E-value=69 Score=29.27 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHH
Q 039737 16 FNFSLWAKWILGSILS--LLLPFWKQKWEKLKQIEGEAEMVI 55 (144)
Q Consensus 16 ~~~p~W~~wvlG~il~--~~vPf~~~kw~~l~~ie~evE~vi 55 (144)
+.++.|..|++.+.+. ...|||++-|..|++-.-..+..+
T Consensus 111 ~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~~~~~md~Lv 152 (736)
T 3rfu_A 111 GNGSSWIQLLLATPVVLWGGWPFFKRGWQSLKTGQLNMFTLI 152 (736)
T ss_dssp TTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTSCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCChHHHH
Confidence 3467899998888765 357999999988876554554443
Done!