BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039739
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 152/564 (26%), Positives = 240/564 (42%), Gaps = 111/564 (19%)
Query: 79 HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHL 138
SLE LD+ I+ ++ + LK+L++ G+ + S +D C V+L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI----SGDVDVSRC--VNL 202
Query: 139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
+ L+++ N+ +P+ L + ++L+ LD+S N+L+G S + + T ++ L +S+N F
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260
Query: 199 IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKF- 257
PI P L+ N+ EI L+ L+ L LS + G + P F
Sbjct: 261 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 258 -----------------------LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
L L+ +DLS + +GE P L + L L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 295 VNDSLGGPF--QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
+++ GP L + L L + NN F G IP + + L SL++S N L G+I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 434
Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLR 412
PSS G++ L+ L L N L GEIP+ L+ + L
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-------------------------VKTLE 469
Query: 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472
L L+ N GEIP LS C L + L+NN L+G+IP+W+G L L + + N G
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 473 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLS---------------------VEQVHL 511
IP E L LD++ N +G++P+ S ++ H
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 512 SKNMLHGQLKRG-------------------------TFFNSYSLVTLDLSYNRLNGNIS 546
+ N+L Q R TF N+ S++ LD+SYN L+G I
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 547 DWVDGLSQLSHLILGHNNLEGEVP 570
+ + L L LGHN++ G +P
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIP 673
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 130/471 (27%), Positives = 206/471 (43%), Gaps = 68/471 (14%)
Query: 133 CSLVHLQVLNIAYNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
CS L L+++ N L G + L + + L+ L+VSSN L S + L S+E L
Sbjct: 98 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 191 YLSNNHFQIPISLEPFFNHS--RLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGY 248
LS N + + LK N+I+ ++ S + +S + S+G
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216
Query: 249 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIH 308
FL L+++D+S K++G+F + + T+L+ L++ ++ GP +P
Sbjct: 217 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 266
Query: 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG----------- 357
K L L ++ N F G IP + +L L++S N G++P FG
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 358 --------------NMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMF- 402
M+ L++LDLS N +GE+PE L G +
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 403 --SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ 460
+N T L+ L L+ N F G+IP +LS C L L L+ N LSG IP LG+L++L+
Sbjct: 387 NLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 461 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520
+ + N LEG IP E + L+ L + N+++G +PS
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 487
Query: 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPV 571
N +L + LS NRL G I W+ L L+ L L +N+ G +P
Sbjct: 488 ------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 195/409 (47%), Gaps = 29/409 (7%)
Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLT----- 185
L + L+VL++++N+ G LP L N++ SL LD+SSN +G I L +L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----LPNLCQNPKN 394
Query: 186 SIEELYLSNNHF--QIPISLEPFFNHSRLKSFYADNNEINAEITQS-HSLTAPNFQLSRL 242
+++ELYL NN F +IP +L N S L S + N ++ I S SL+ +L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSLS----KLRDL 447
Query: 243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP 302
L +G I P+ L + LE + L + GE P+ L N T L +SL N+ L G
Sbjct: 448 KLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGE 505
Query: 303 FQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFL 362
I + L +L +SNN+F G+IP E+GD SL L+++ N +G+IP++ F
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FK 560
Query: 363 QILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFN-LTNLRWLQLEGNHF 421
Q ++ N + G+ ++ + + S N L+ + +
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 481
G + + L ++ N LSG IP+ +G++ L + + N + G IP E L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 482 WLQILDISDNNISGSLPSCFHPLSV-EQVHLSKNMLHGQLKRGTFFNSY 529
L ILD+S N + G +P L++ ++ LS N L G + F ++
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 196/447 (43%), Gaps = 73/447 (16%)
Query: 190 LYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249
L+LSN+H I S+ F + L S N ++ +T SL + + L L++SS
Sbjct: 82 LFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTL 138
Query: 250 DGFIFPKFL---YHQHDLEYVDLSHIKMNGE-FPTWLLENNT-KLRQLSLVNDSLGGPFQ 304
D FP + + LE +DLS ++G W+L + +L+ L++ + + G
Sbjct: 139 D---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--D 193
Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
+ + L LD+S+NNF IP +GD +L L+IS N L G + L++
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 365 LDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGE 424
L++S+N G IP L +L++L L N F GE
Sbjct: 252 LNISSNQFVGPIPP---------------------------LPLKSLQYLSLAENKFTGE 284
Query: 425 IPQSLS-KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDW 482
IP LS C L GL L+ N G +P + G+ + L+ + + N+ G +P++ ++
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 483 LQILDISDNNISGSLPS---------------------------CFHPL-SVEQVHLSKN 514
L++LD+S N SG LP C +P ++++++L N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVXXX 574
G++ T N LV+L LS+N L+G I + LS+L L L N LEGE+P
Sbjct: 405 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 575 XXXXXXXXXXXXXXXHGSIPLCLDNTT 601
G IP L N T
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCT 490
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 136/324 (41%), Gaps = 54/324 (16%)
Query: 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF 197
L+ L + +NDL G +P L+N T+L + +S+N+LTG I + L ++ L LSNN F
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF 526
Query: 198 QIPISLEPFFNHSRLKSFYAD------NNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
I E S + + D N I A + + A NF +
Sbjct: 527 SGNIPAELGDCRSLI---WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---------- 573
Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDS---LGGPFQLPIH 308
+++Y ++D + EF E +L + N + GG
Sbjct: 574 ----RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLS 368
++ + LD+S N G+IP EIG +P LF LN+ N + GSIP G+++ L ILDLS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 369 NNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428
+N L G IP+ + LT L + L N+ G IP+
Sbjct: 689 SNKLDGRIPQAMSA-------------------------LTMLTEIDLSNNNLSGPIPEM 723
Query: 429 LSKCFVLEGLFLNNNSLSG-KIPR 451
FLNN L G +PR
Sbjct: 724 GQFETFPPAKFLNNPGLCGYPLPR 747
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 184
S + + + S+ +L +LN+ +ND+ GS+P + ++ L ILD+SSN+L G I + + L
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSAL 703
Query: 185 TSIEELYLSNNHFQIPI 201
T + E+ LSNN+ PI
Sbjct: 704 TMLTEIDLSNNNLSGPI 720
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 152/564 (26%), Positives = 240/564 (42%), Gaps = 111/564 (19%)
Query: 79 HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHL 138
SLE LD+ I+ ++ + LK+L++ G+ + S +D C V+L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI----SGDVDVSRC--VNL 199
Query: 139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
+ L+++ N+ +P+ L + ++L+ LD+S N+L+G S + + T ++ L +S+N F
Sbjct: 200 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 257
Query: 199 IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKF- 257
PI P L+ N+ EI L+ L+ L LS + G + P F
Sbjct: 258 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 258 -----------------------LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
L L+ +DLS + +GE P L + L L L
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 295 VNDSLGGPF--QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
+++ GP L + L L + NN F G IP + + L SL++S N L G+I
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 431
Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLR 412
PSS G++ L+ L L N L GEIP+ L+ + L
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-------------------------VKTLE 466
Query: 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472
L L+ N GEIP LS C L + L+NN L+G+IP+W+G L L + + N G
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 473 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLS---------------------VEQVHL 511
IP E L LD++ N +G++P+ S ++ H
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 512 SKNMLHGQLKRG-------------------------TFFNSYSLVTLDLSYNRLNGNIS 546
+ N+L Q R TF N+ S++ LD+SYN L+G I
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 547 DWVDGLSQLSHLILGHNNLEGEVP 570
+ + L L LGHN++ G +P
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIP 670
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 130/471 (27%), Positives = 206/471 (43%), Gaps = 68/471 (14%)
Query: 133 CSLVHLQVLNIAYNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
CS L L+++ N L G + L + + L+ L+VSSN L S + L S+E L
Sbjct: 95 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 191 YLSNNHFQIPISLEPFFNHS--RLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGY 248
LS N + + LK N+I+ ++ S + +S + S+G
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 249 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIH 308
FL L+++D+S K++G+F + + T+L+ L++ ++ GP +P
Sbjct: 214 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 263
Query: 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG----------- 357
K L L ++ N F G IP + +L L++S N G++P FG
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 358 --------------NMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMF- 402
M+ L++LDLS N +GE+PE L G +
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 403 --SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ 460
+N T L+ L L+ N F G+IP +LS C L L L+ N LSG IP LG+L++L+
Sbjct: 384 NLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 461 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520
+ + N LEG IP E + L+ L + N+++G +PS
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 484
Query: 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPV 571
N +L + LS NRL G I W+ L L+ L L +N+ G +P
Sbjct: 485 ------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 195/409 (47%), Gaps = 29/409 (7%)
Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLT----- 185
L + L+VL++++N+ G LP L N++ SL LD+SSN +G I L +L
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----LPNLCQNPKN 391
Query: 186 SIEELYLSNNHF--QIPISLEPFFNHSRLKSFYADNNEINAEITQS-HSLTAPNFQLSRL 242
+++ELYL NN F +IP +L N S L S + N ++ I S SL+ +L L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSLS----KLRDL 444
Query: 243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP 302
L +G I P+ L + LE + L + GE P+ L N T L +SL N+ L G
Sbjct: 445 KLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGE 502
Query: 303 FQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFL 362
I + L +L +SNN+F G+IP E+GD SL L+++ N +G+IP++ F
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FK 557
Query: 363 QILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFN-LTNLRWLQLEGNHF 421
Q ++ N + G+ ++ + + S N L+ + +
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 481
G + + L ++ N LSG IP+ +G++ L + + N + G IP E L
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 482 WLQILDISDNNISGSLPSCFHPLSV-EQVHLSKNMLHGQLKRGTFFNSY 529
L ILD+S N + G +P L++ ++ LS N L G + F ++
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 196/447 (43%), Gaps = 73/447 (16%)
Query: 190 LYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249
L+LSN+H I S+ F + L S N ++ +T SL + + L L++SS
Sbjct: 79 LFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTL 135
Query: 250 DGFIFPKFL---YHQHDLEYVDLSHIKMNGE-FPTWLLENNT-KLRQLSLVNDSLGGPFQ 304
D FP + + LE +DLS ++G W+L + +L+ L++ + + G
Sbjct: 136 D---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--D 190
Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
+ + L LD+S+NNF IP +GD +L L+IS N L G + L++
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 365 LDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGE 424
L++S+N G IP L +L++L L N F GE
Sbjct: 249 LNISSNQFVGPIPP---------------------------LPLKSLQYLSLAENKFTGE 281
Query: 425 IPQSLS-KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDW 482
IP LS C L GL L+ N G +P + G+ + L+ + + N+ G +P++ ++
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 483 LQILDISDNNISGSLPS---------------------------CFHPL-SVEQVHLSKN 514
L++LD+S N SG LP C +P ++++++L N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVXXX 574
G++ T N LV+L LS+N L+G I + LS+L L L N LEGE+P
Sbjct: 402 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 575 XXXXXXXXXXXXXXXHGSIPLCLDNTT 601
G IP L N T
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCT 487
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 136/324 (41%), Gaps = 54/324 (16%)
Query: 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF 197
L+ L + +NDL G +P L+N T+L + +S+N+LTG I + L ++ L LSNN F
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF 523
Query: 198 QIPISLEPFFNHSRLKSFYAD------NNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
I E S + + D N I A + + A NF +
Sbjct: 524 SGNIPAELGDCRSLI---WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---------- 570
Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDS---LGGPFQLPIH 308
+++Y ++D + EF E +L + N + GG
Sbjct: 571 ----RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLS 368
++ + LD+S N G+IP EIG +P LF LN+ N + GSIP G+++ L ILDLS
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 369 NNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428
+N L G IP+ + LT L + L N+ G IP+
Sbjct: 686 SNKLDGRIPQAMSA-------------------------LTMLTEIDLSNNNLSGPIPEM 720
Query: 429 LSKCFVLEGLFLNNNSLSG-KIPR 451
FLNN L G +PR
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPR 744
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 184
S + + + S+ +L +LN+ +ND+ GS+P + ++ L ILD+SSN+L G I + + L
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSAL 700
Query: 185 TSIEELYLSNNHFQIPI 201
T + E+ LSNN+ PI
Sbjct: 701 TMLTEIDLSNNNLSGPI 717
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 352 IPSSFGNMKFLQILDLSN-NHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTN 410
IPSS N+ +L L + N+L G IP + LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 411 LRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE 470
L +L + + G IP LS+ L L + N+LSG +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 471 GPIPVEFCQLDWL-QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQ---------- 519
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 520 ------LKRGTFFN------SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG 567
K F+ S +L LDL NR+ G + + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 568 EVP 570
E+P
Sbjct: 283 EIP 285
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 89/225 (39%), Gaps = 5/225 (2%)
Query: 254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRL 313
P + L Y+ ++H ++G P +L + T L L ++L G I S L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373
+ N G IP G S+ IS N L G IP +F N+ L +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 374 GEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF 433
G+ ++ G + NL L L N G +PQ L++
Sbjct: 211 GD--ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 478
L L ++ N+L G+IP+ GNL R N P+ C
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 20/245 (8%)
Query: 134 SLVHLQVLNIAY----NDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 189
SL +L LN Y N+L G +P +A +T L L ++ ++G+I L + ++
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVT 129
Query: 190 LYLSNNHFQ--IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSG 247
L S N +P S+ N L D N I+ I S+ + F + +++S
Sbjct: 130 LDFSYNALSGTLPPSISSLPN---LVGITFDGNRISGAIPDSYGSFSKLF--TSMTISRN 184
Query: 248 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQL-P 306
G I P F +L +VDLS + G+ + L ++ +++ L +SL F L
Sbjct: 185 RLTGKIPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGK 239
Query: 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366
+ K L LD+ NN G +P + L L SLN+S N L G IP GN++ +
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297
Query: 367 LSNNH 371
+NN
Sbjct: 298 YANNK 302
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 425 IPQSLSKCFVLEGLFLNN-NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
IP SL+ L L++ N+L G IP + LT+L ++ + ++ G IP Q+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 484 QILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
LD S N +SG+LP L ++ + N + G + S ++ +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPV 571
G I L+ L+ + L N LEG+ V
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASV 215
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 121/305 (39%), Gaps = 36/305 (11%)
Query: 76 GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSL 135
F K LEHL+ME I + + +LKYLSL S T+ + + SL
Sbjct: 324 SFQWLKCLEHLNMEDNDIP---GIKSNMFTGLINLKYLSLSNSF--TSLRTLTNETFVSL 378
Query: 136 VH--LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
H L +LN+ N + + + L +LD+ N++ ++ L +I E+YLS
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 194 -NNHFQIP---ISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249
N + Q+ +L P L+ N + S S P L+ L LS+
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKN------VDSSPSPFQPLRNLTILDLSNNNI 492
Query: 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHS 309
L LE +DL H N W N GGP +
Sbjct: 493 ANIND-DMLEGLEKLEILDLQH---NNLARLWKHANP-------------GGPIYF-LKG 534
Query: 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSN 369
L +L++ +N F IPVE+ L L +++ +N L+ S F N L+ L+L
Sbjct: 535 LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 370 NHLTG 374
N +T
Sbjct: 594 NLITS 598
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 120/305 (39%), Gaps = 36/305 (11%)
Query: 76 GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSL 135
F K LEHL+ME I + + +LKYLSL S T+ + + SL
Sbjct: 329 SFQWLKCLEHLNMEDNDIP---GIKSNMFTGLINLKYLSLSNSF--TSLRTLTNETFVSL 383
Query: 136 VH--LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
H L +LN+ N + + + L +LD+ N++ ++ L +I E+YLS
Sbjct: 384 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 443
Query: 194 NNHF----QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249
N + + +L P L+ N + S S P L+ L LS+
Sbjct: 444 YNKYLQLTRNSFALVPSLQRLMLRRVALKN------VDSSPSPFQPLRNLTILDLSNNNI 497
Query: 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHS 309
L LE +DL H N W N GGP +
Sbjct: 498 ANIND-DMLEGLEKLEILDLQH---NNLARLWKHANP-------------GGPIYF-LKG 539
Query: 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSN 369
L +L++ +N F IPVE+ L L +++ +N L+ S F N L+ L+L
Sbjct: 540 LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 598
Query: 370 NHLTG 374
N +T
Sbjct: 599 NLITS 603
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 121/305 (39%), Gaps = 36/305 (11%)
Query: 76 GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSL 135
F K LEHL+ME I + + +LKYLSL S T+ + + SL
Sbjct: 334 SFQWLKCLEHLNMEDNDIP---GIKSNMFTGLINLKYLSLSNSF--TSLRTLTNETFVSL 388
Query: 136 VH--LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
H L +LN+ N + + + L +LD+ N++ ++ L +I E+YLS
Sbjct: 389 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 448
Query: 194 -NNHFQIP---ISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249
N + Q+ +L P L+ N + S S P L+ L LS+
Sbjct: 449 YNKYLQLTRNSFALVPSLQRLMLRRVALKN------VDSSPSPFQPLRNLTILDLSNNNI 502
Query: 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHS 309
L LE +DL H N W N GGP +
Sbjct: 503 ANIND-DMLEGLEKLEILDLQH---NNLARLWKHANP-------------GGPIYF-LKG 544
Query: 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSN 369
L +L++ +N F IPVE+ L L +++ +N L+ S F N L+ L+L
Sbjct: 545 LSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 603
Query: 370 NHLTG 374
N +T
Sbjct: 604 NLITS 608
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 116/481 (24%), Positives = 187/481 (38%), Gaps = 67/481 (13%)
Query: 55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLS 114
FP L+ L + CE+ + G ++SL HL LI + + L L
Sbjct: 75 FPELQVLDLSRCEIQTIEDGA----YQSLSHL---STLILTGNPIQSLALGAFSGLSSLQ 127
Query: 115 LFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRILDVSSNQLT 173
++ TN + + + + L L+ LN+A+N ++ LP +N+T+L LD+SSN++
Sbjct: 128 KLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186
Query: 174 GSISSSPLVHLTSIEELYLSNNHFQIPIS-LEP-FFNHSRLKSFYADNNEINAEITQSHS 231
SI + L L + L LS + P++ ++P F RL NN + + ++
Sbjct: 187 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 245
Query: 232 LTAPNFQLSRLSLSSGYGDGFI--FPK--------FLYHQHDLEYVD------------- 268
++ RL L +G + F K + L Y+D
Sbjct: 246 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305
Query: 269 -----LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNF 323
S + + E N + L LVN G Q P K L L ++N
Sbjct: 306 TNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNK- 360
Query: 324 RGHIPVEIGDVLPSLFSLNISMNALD----------GSIPSSFGNMKFLQILDLSNNHLT 373
G+ E+ LPSL L++S N L G+I + ++ F ++ +S+N L
Sbjct: 361 GGNAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG 418
Query: 374 GEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF 433
E EHL FS +L NL +L + H +
Sbjct: 419 LEQLEHL---------DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469
Query: 434 VLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 492
LE L + NS +P L L + + + LE P F L LQ+L++S NN
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 493 I 493
Sbjct: 530 F 530
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
L L LQ LN + N + P LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQSHSLTAPNFQLSRLSLS 245
+NN + P + L + N++ A +T L N Q+S L+
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 246 SG 247
SG
Sbjct: 258 SG 259
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 114/482 (23%), Positives = 186/482 (38%), Gaps = 69/482 (14%)
Query: 55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLS 114
FP L+ L + CE+ + G ++SL HL LI + + L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGA----YQSLSHL---STLILTGNPIQSLALGAFSGLSSLQ 103
Query: 115 LFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRILDVSSNQLT 173
++ TN + + + + L L+ LN+A+N ++ LP +N+T+L LD+SSN++
Sbjct: 104 KLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 174 GSISSSPLVHLTSIEELYLSNNHFQIPIS-LEP-FFNHSRLKSFYADNNEINAEITQSHS 231
SI + L L + L LS + P++ ++P F RL NN + + ++
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 232 LTAPNFQLSRLSLSSGYGDG--------------------FIFPKFLYHQHDLEYVDLSH 271
++ RL L +G F Y+ D+ +DL +
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI--IDLFN 279
Query: 272 IKMNGEFPTWL---------LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322
N + + N + L LVN G Q P K L L ++N
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNK 336
Query: 323 FRGHIPVEIGDVLPSLFSLNISMNALD----------GSIPSSFGNMKFLQILDLSNNHL 372
G+ E+ LPSL L++S N L G+ + ++ F ++ +S+N L
Sbjct: 337 -GGNAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 373 TGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKC 432
E EHL FS +L NL +L + H +
Sbjct: 394 GLEQLEHL---------DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 433 FVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
LE L + NS +P L L + + + LE P F L LQ+L++S N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 492 NI 493
N
Sbjct: 505 NF 506
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 128 LDRGLCSLVHLQV---------LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
LDR C L LQV L++++N L+ SLP + +L +LDVS N+LT S+
Sbjct: 62 LDR--CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117
Query: 179 SPLVHLTSIEELYLSNNHFQ 198
L L ++ELYL N +
Sbjct: 118 GALRGLGELQELYLKGNELK 137
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 128 LDRGLCSLVHLQV---------LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
LDR C L LQV L++++N L+ SLP + +L +LDVS N+LT S+
Sbjct: 63 LDR--CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 118
Query: 179 SPLVHLTSIEELYLSNNHFQ 198
L L ++ELYL N +
Sbjct: 119 GALRGLGELQELYLKGNELK 138
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 128 LDRGLCSLVHLQV---------LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
LDR C L LQV L++++N L+ SLP + +L +LDVS N+LT S+
Sbjct: 62 LDR--CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117
Query: 179 SPLVHLTSIEELYLSNNHFQ 198
L L ++ELYL N +
Sbjct: 118 GALRGLGELQELYLKGNELK 137
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 453 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-VEQVHL 511
L LT L ++++ N L+ F +L L+ L + +N + F L+ + ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566
+ N L L +G F +L LDLSYN+L D L+QL L L N L+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 75 QGFPHFKSLEHLDMEG-------ALIAL-NTSFLQIIGESMPSL------KYLSLFGSIL 120
QG + ++ +L + G AL L N ++L + G + SL K +L +L
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 121 GTNSSRILDRGLC-SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
N + L G+ L +L LN+A+N L+ +T+L LD+S NQL S+
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175
Query: 180 PLVHLTSIEELYLSNNHFQ 198
LT +++L L N +
Sbjct: 176 VFDKLTQLKDLRLYQNQLK 194
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 76 GFPHFKSLEHLDMEGALIALNTS--FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLC 133
F K LE+L+M+ I S F ++ SLKYLSL + T+ + +
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFTGLV-----SLKYLSLSKTF--TSLQTLTNETFV 376
Query: 134 SLVH--LQVLNIAYNDL----RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 187
SL H L LN+ N + G+ W + LRILD+ N++ +S L +I
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEIEQKLSGQEWRGLRNI 432
Query: 188 EELYLSNNHF 197
E+YLS N +
Sbjct: 433 FEIYLSYNKY 442
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 126/327 (38%), Gaps = 46/327 (14%)
Query: 287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNF--------------------RGH 326
T L +L L+++S+ P + K L LD+S+N +
Sbjct: 97 TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 327 IPVEIGDVLP-----SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN----HLTGEIP 377
I + L SL L++S N L P F + L L L+N HLT ++
Sbjct: 157 ILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLC 216
Query: 378 EHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGN--HFVGEIPQSLSKCFVL 435
L + TNL L L N H VG S S L
Sbjct: 217 WELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN--GSFSYLPSL 274
Query: 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV---------EFCQLDWLQIL 486
L L N++ PR L+ L+++ + + + + + F L +L+ L
Sbjct: 275 RYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYL 334
Query: 487 DISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYS---LVTLDLSYNRLN 542
++ DNNI + + F L S++ + LSK Q F S + L+TL+L+ N ++
Sbjct: 335 NMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHIS 394
Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEV 569
+ L QL L LG N +E ++
Sbjct: 395 KIANGTFSWLGQLRILDLGLNEIEQKL 421
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 35/164 (21%)
Query: 82 SLEHLDMEG--ALIALNTSFLQIIGESMPSLKYLS-LFGSILGTNSSRILD-RGLCSLVH 137
++ D++G L A NT I G ++YL+ L G L N +I D L +L
Sbjct: 40 AVTQADLDGIATLSAFNTGVTTIEG-----IQYLNNLIGLELKDN--QITDLTPLKNLTK 92
Query: 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLT-----GSISS-------------- 178
+ L ++ N L+ +A + S++ LD++S Q+T +S+
Sbjct: 93 ITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI 150
Query: 179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
SPL LT+++ L + NN L P N S+L + AD+N+I
Sbjct: 151 SPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTLRADDNKI 191
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 483 LQILDISDNNI--SGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR 540
LQ LD+S N++ + PSC P + ++LS L Q+ +G L LDLSYNR
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL---PAKLSVLDLSYNR 285
Query: 541 LNGNISDWVDGLSQLSHLILGHN 563
L+ N S D L Q+ +L L N
Sbjct: 286 LDRNPSP--DELPQVGNLSLKGN 306
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
L L LQ L+ + N + P LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQSHSLTAPNFQLSRLSLS 245
+NN + P + L + N++ A +T L N Q+S L+
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 246 SG 247
SG
Sbjct: 258 SG 259
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
L L LQ L+ + N + P LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQSHSLTAPNFQLSRLSLS 245
+NN + P + L + N++ A +T L N Q+S L+
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 246 SG 247
SG
Sbjct: 258 SG 259
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 141 LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIP 200
L++++N LR LP LA + L +L S N L + +L ++EL L NN Q
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLCNNRLQQS 523
Query: 201 ISLEPFFNHSRL 212
+++P + RL
Sbjct: 524 AAIQPLVSCPRL 535
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 141 LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIP 200
L++++N LR LP LA + L +L S N L + +L ++EL L NN Q
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLCNNRLQQS 523
Query: 201 ISLEPFFNHSRL 212
+++P + RL
Sbjct: 524 AAIQPLVSCPRL 535
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 104 GESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLR 163
G + S+++L L + + +SR+ + +L L+VLN+AYN + + +L+
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFE----TLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 164 ILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQI 199
+L++S N L G + SS L + + L NH I
Sbjct: 318 VLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAI 352
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL----EGPIPVEFCQLDWLQILDISD 490
L+ L+LN+N L+ P +LT L+ + + N L +P L+ILDIS
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISR 535
Query: 491 NNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN 527
N + P F LSV + ++ N + + TF N
Sbjct: 536 NQLLAPNPDVFVSLSV--LDITHNKFICECELSTFIN 570
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLT 173
L HLQVL + +N L P +++T+LR L ++SN+LT
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
L L LN+ YN L+ ++T L L +++NQL S+ HLT +++LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 195 NHFQ-IPISLEPFFNHSRLKSFYADNNEINA 224
N + +P + F ++LK + N++ +
Sbjct: 117 NQLKSLPSGV--FDRLTKLKELRLNTNQLQS 145
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
L L LN+ YN L+ ++T L L +++NQL S+ HLT +++LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 195 NHFQ-IPISLEPFFNHSRLKSFYADNNEINA 224
N + +P + F ++LK + N++ +
Sbjct: 117 NQLKSLPSGV--FDRLTKLKELRLNTNQLQS 145
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
L HL++L ++ N +R + +L L++ N+LT +I + V+L+ ++EL+L N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145
Query: 195 NHFQIPISLEPFFNHSRLKSF 215
N PI P + +R+ S
Sbjct: 146 N----PIESIPSYAFNRIPSL 162
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 102/258 (39%), Gaps = 72/258 (27%)
Query: 341 LNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGH 400
LN+ N + +SF +++ L+IL LS NH+ + +G
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-----RTIEIGA---------------- 107
Query: 401 MFSRNFN-LTNLRWLQLEGNHFVGEIPQS----LSKCFVLEGLFLNNNSLSG-------K 448
FN L NL L+L N IP LSK L+ L+L NN + +
Sbjct: 108 -----FNGLANLNTLELFDNRLT-TIPNGAFVYLSK---LKELWLRNNPIESIPSYAFNR 158
Query: 449 IPRW----LGNLTRLQHI---------------MMPKNHLEGPIPVEFCQLDWLQILDIS 489
IP LG L RL +I + N E P +LD LD+S
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD---ELDLS 215
Query: 490 DNNISGSLPSCFHPLSVEQVHLSK-NMLHGQLK---RGTFFNSYSLVTLDLSYNRLNGNI 545
N++S P F L +HL K M+ Q++ R F N SLV ++L++N L
Sbjct: 216 GNHLSAIRPGSFQGL----MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 546 SDWVDGLSQLSHLILGHN 563
D L L + L HN
Sbjct: 272 HDLFTPLHHLERIHLHHN 289
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 83/224 (37%), Gaps = 53/224 (23%)
Query: 1 MGSFPSLNTLYLSSNNFTDIATATQE-----LHNFTNLEYXXXXXXXXXXXXXXXXXXXF 55
+G+F + YL+S F + + E H F++L F
Sbjct: 231 LGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLS--------------SSTFRCF 276
Query: 56 PSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSF---LQIIGESMPSLKY 112
++ L + +NGL G +E ++ L+ SF QI S PSL+
Sbjct: 277 TRVQELDLTAAHLNGLPSG--------IEGMNSLKKLVLNANSFDQLCQINAASFPSLRD 328
Query: 113 LSLFGSI----LGTN-------------------SSRILDRGLCSLVHLQVLNIAYNDLR 149
L + G++ LGT +S + L +L HLQ LN++YN+
Sbjct: 329 LYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 150 GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
G L +LDV+ L SP +L + L LS
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
+L L L++++N L+ SLP + +L +LDVS N+LT S+ L L ++ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 194 NNHFQ 198
N +
Sbjct: 133 GNELK 137
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
+L L L++++N L+ SLP + +L +LDVS N+LT S+ L L ++ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 194 NNHFQ 198
N +
Sbjct: 133 GNELK 137
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
+L L L++++N L+ SLP + +L +LDVS N+LT S+ L L ++ELYL
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 194 NNHFQ 198
N +
Sbjct: 133 GNELK 137
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 484 QILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
QIL + DN I+ P F L ++++++L N L G L G F + L LDL N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVP 570
S D L L L + N L E+P
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELP 128
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 134 SLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYL 192
SL++L+ L + N L G+LP ++T L +LD+ +NQLT + S+ L ++EL++
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 193 SNNHF-QIPISLE 204
N ++P +E
Sbjct: 120 CCNKLTELPRGIE 132
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 131 GLCSLVHLQVLNIA--YNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 188
L L LQ LN DL+ LAN+T+L LD+SSN+++ S L LT++E
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 197
Query: 189 ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQSHSLTAPNFQLSRLS 243
L +NN + P + L + N++ A +T L N Q+S L+
Sbjct: 198 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 244 LSSG 247
SG
Sbjct: 255 PLSG 258
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 131 GLCSLVHLQVLNIA--YNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 188
L L LQ LN DL+ LAN+T+L LD+SSN+++ S L LT++E
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 197
Query: 189 ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQSHSLTAPNFQLSRLS 243
L +NN + P + L + N++ A +T L N Q+S L+
Sbjct: 198 SLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 244 LSSG 247
SG
Sbjct: 255 PLSG 258
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 22/87 (25%)
Query: 155 CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ--IPIS---------- 202
+A + S++ LD++S Q+T +PL L++++ LYL N P++
Sbjct: 102 AIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
Query: 203 -------LEPFFNHSRLKSFYADNNEI 222
L P N S+L + AD+N+I
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKI 185
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 58 LKNLSMIG-CEVNG--LVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLS 114
LKNL+ I E++G L +S++ LD+ I T + G S + YL
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI---TDVTPLAGLSNLQVLYLD 137
Query: 115 LFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTG 174
L TN S + GL +L +L + N +DL LAN++ L L N+++
Sbjct: 138 LNQI---TNISPL--AGLTNLQYLSIGNAQVSDLT-----PLANLSKLTTLKADDNKIS- 186
Query: 175 SISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL 212
SPL L ++ E++L NN + P N S L
Sbjct: 187 --DISPLASLPNLIEVHLKNNQIS---DVSPLANTSNL 219
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 80 FKSLEHLDMEGALIALNTSFLQI---IGESMPSLKYLSLFGSILGTNSSRILDRGLCSLV 136
F SL HL ++G NT L++ E++ +L+ L L + T S + L +L
Sbjct: 324 FPSLTHLSIKG-----NTKRLELGTGCLENLENLRELDLSHDDIET--SDCCNLQLRNLS 376
Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
HLQ LN++YN+ L +LD++ +L + SP +L ++ L LS H
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS--H 434
Query: 197 FQIPISLEPFFN 208
+ IS E F+
Sbjct: 435 SLLDISSEQLFD 446
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
GL SL L N DL+ LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 153 GLTSLQQLSFGN-QVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLESL 203
Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQSHSLTAPNFQLSRLSLS 245
+NN + P + L + N++ A +T L N Q+S L+
Sbjct: 204 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 260
Query: 246 SG 247
SG
Sbjct: 261 SG 262
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
GL SL L N DL+ LAN+T+L LD+SSN+++ S L LT++E L
Sbjct: 154 GLTSLQQLSFGN-QVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLESL 204
Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQSHSLTAPNFQLSRLSLS 245
+NN + P + L + N++ A +T L N Q+S L+
Sbjct: 205 IATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 261
Query: 246 SG 247
SG
Sbjct: 262 SG 263
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH 468
+ + L L+ N ++ + L L+LN+N L L L+ + + N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 469 LEG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFF 526
L+ PI V F QL L L + N + P F L+ + + L N L L +G F
Sbjct: 97 LQALPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 527 NSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVP 570
SL L L N+L D L++L L L +N L+ VP
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 126 RILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 185
R+ D SL L L++ YN+L+ +TSL+ L + +NQL + LT
Sbjct: 127 RVFD----SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181
Query: 186 SIEELYLSNNHFQ 198
++ L L NN +
Sbjct: 182 ELKTLKLDNNQLK 194
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 484 QILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
Q L +++N I+ P F H ++++Q++ + N L + G F L LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 543 GNISDWVDGLSQLSHLILGHNNLEGE 568
D L L+H+ L +N + E
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 438 LFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497
L+LNNN ++ P +L LQ + N L F +L L LD++DN++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 498 PSCFHPL-SVEQVHLSKN 514
F L S+ ++L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 28/125 (22%)
Query: 262 HDLEYVDLSH--IKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLG----- 314
LE++D H +K EF +L LR L ++ S H+H R+
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLDIS---------HTHTRVAFNGIF 146
Query: 315 -------MLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367
+L ++ N+F+ + +I L +L L++S L+ P++F ++ LQ+L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 368 SNNHL 372
S+N+
Sbjct: 207 SHNNF 211
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 137 GNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 185
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195
V L +L + +N+L + W L N L +D+S N+L I P V + +E LY+SNN
Sbjct: 232 VELTILKLQHNNLTDT-AWLL-NYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNN 288
Query: 196 HF 197
Sbjct: 289 RL 290
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 162 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 140 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 188
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
L HL++L ++ N +R + SL L++ N+LT ++ + +L+ + EL+L N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRN 116
Query: 195 NHFQIPISLEPFFNHSRLKSF 215
N PI P + +R+ S
Sbjct: 117 N----PIESIPSYAFNRVPSL 133
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 94/238 (39%), Gaps = 52/238 (21%)
Query: 341 LNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGH 400
LN+ N++ +F +++ L+IL LS N + + VG
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGA---------------- 78
Query: 401 MFSRNFN-LTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW------- 452
FN L +L L+L N Q+ L L+L NN + IP +
Sbjct: 79 -----FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPS 132
Query: 453 -----LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVE 507
LG L RL++I + EG + + + L + DI P+ + +E
Sbjct: 133 LRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDI---------PNLTALVRLE 181
Query: 508 QVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
++ LS N L ++ G+F SL L L + ++ + D L L L L HNNL
Sbjct: 182 ELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 484 QILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
+ L++ +N+I F H +E + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 543 GNISDWVDGLSQLSHLILGHNNLE 566
+ + LS+L L L +N +E
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIE 120
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
L HL++L ++ N +R + SL L++ N+LT ++ + +L+ + EL+L N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRN 116
Query: 195 NHFQIPISLEPFFNHSRLKSF 215
N PI P + +R+ S
Sbjct: 117 N----PIESIPSYAFNRVPSL 133
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 94/238 (39%), Gaps = 52/238 (21%)
Query: 341 LNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGH 400
LN+ N++ +F +++ L+IL LS N + + VG
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGA---------------- 78
Query: 401 MFSRNFN-LTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW------- 452
FN L +L L+L N Q+ L L+L NN + IP +
Sbjct: 79 -----FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPS 132
Query: 453 -----LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVE 507
LG L RL++I + EG + + + L + DI P+ + +E
Sbjct: 133 LRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDI---------PNLTALVRLE 181
Query: 508 QVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
++ LS N L ++ G+F SL L L + ++ + D L L L L HNNL
Sbjct: 182 ELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 484 QILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
+ L++ +N+I F H +E + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 543 GNISDWVDGLSQLSHLILGHNNLEG 567
+ + LS+L L L +N +E
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIES 121
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 475 VEFCQLDWLQILDISDNNISGSL-PSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLV 532
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F +L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132
Query: 533 TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVP 570
L L N L D L L+HL L H N VP
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFL-HGNRISSVP 169
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 160 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 160 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466
+LT L+ L + G++ + +I L+ L LFLNNN L + +G LT L + + +
Sbjct: 263 DLTKLKXLNV-GSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 467 NHLEGPIPV 475
NH+ P+
Sbjct: 321 NHITDIRPL 329
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 160 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 74/177 (41%), Gaps = 13/177 (7%)
Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
H S LTNL +L L GN K L+ L L N L LT L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHPLS-VEQVHLSKNMLH 517
++ + N L+ F +L L LD+ DNN SLP F L+ ++Q+ L+ N L
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Query: 518 GQLKRGTFFNSYSLVTLDLSYNRLNGNISD------WVDGLSQLSHLILGHNNLEGE 568
+ G F SL + L N + SD W+ SQ L+ G+ NL+ +
Sbjct: 195 S-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHPGLVFGYLNLDPD 247
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 475 VEFCQLDWLQILDISDNNISGSL-PSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLV 532
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F +L
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 131
Query: 533 TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVP 570
L L N L D L L+HL L H N VP
Sbjct: 132 YLYLQDNALQALPDDTFRDLGNLTHLFL-HGNRISSVP 168
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 414 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI 473
L L+GN F +P+ LS L + L+NN +S + N+T+L +++ N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 474 PVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506
P F L L++L + N+IS F+ LS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195
V L +L + +N+L + W L N L +D+S N+L I P V + +E LY+SNN
Sbjct: 226 VELTILKLQHNNLTDT-AWLL-NYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNN 282
Query: 196 HF 197
Sbjct: 283 RL 284
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N +S +P L LT+LQ++ + KNH+
Sbjct: 137 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHI 185
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 486 LDISDNNISGSLPS-CFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543
LD+ N++ SLP+ F L S+ Q++L N L L G F SL L+LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 544 NISDWVDGLSQLSHLILGHNNLE 566
+ D L+QL L L N L+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ 113
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 26/138 (18%)
Query: 94 ALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG--- 150
AL+ S LQI S KY L L NS L + +L +L+VL++++N L
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 151 -------------------SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL- 190
+LPW N+ +L+ L V N L ++ S+ L
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK--ILTEKSVTGLI 345
Query: 191 -YLSNNHFQIPISLEPFF 207
YL +N +IP+ E F
Sbjct: 346 FYLRDNRPEIPLPHERRF 363
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 438 LFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILDISDNNISG 495
L +NN L+ + G+LT L+ +++ N L+ I Q+ LQ LDIS N++S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 496 SLPS--CFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS 553
C S+ +++S N+L + R + LDL N++ I V L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 554 QLSHLILGHNNLEGEVP 570
L L + N L+ VP
Sbjct: 445 ALQELNVASNQLKS-VP 460
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIP---------VEIGDVLPS--LFSLNISMNALD 349
++ I SH R+ LDIS F + V+I P+ L L++S NA D
Sbjct: 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKHLDLSFNAFD 103
Query: 350 G-SIPSSFGNMKFLQILDLSNNHL 372
I FGNM L+ L LS HL
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHL 127
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
GN+ + +I LS+ L+ L L +N + +P L LT+LQ++ + KNH+
Sbjct: 140 GNNKITDI-TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHI 188
>pdb|4DKO|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKO|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKP|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKP|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKQ|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Dmj-I-228
pdb|4DKR|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DKR|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DVS|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVS|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVT|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVT|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVV|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVV|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVW|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVW|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVX|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
pdb|4DVX|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
Length = 353
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520
PIP+ +C IL +D N +G+ P C + SV+ H K ++ QL
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL 143
>pdb|3U7Y|G Chain G, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 361
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520
PIP+ +C IL +D N +G+ P C + SV+ H K ++ QL
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL 143
>pdb|2WXW|A Chain A, Crystal Structure Of Human Angiotensinogen
Length = 453
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 413 WLQLEGNHFVGEIPQSLSKCFVL------------EGLFLNNNSLSGKIPRWLGNLT-RL 459
W ++ N V ++P + S C +L EGL NSL+ W+ L+ R
Sbjct: 290 WSDIQDNFSVTQVPFTESACLLLIQPHYASDLDKVEGLTFQQNSLN-----WMKKLSPRT 344
Query: 460 QHIMMPKNHLEG 471
H+ MP+ L+G
Sbjct: 345 IHLTMPQLVLQG 356
>pdb|3NGB|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|A Chain A, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|D Chain D, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|I Chain I, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3SE8|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
pdb|3SE9|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|3TGT|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade AE STRAIN
93TH057 GP120 Core
Length = 353
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520
PIP+ +C IL +D N +G+ P C + SV+ H K ++ QL
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL 143
>pdb|2X0B|B Chain B, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|D Chain D, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|F Chain F, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|H Chain H, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 452
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 31/103 (30%)
Query: 413 WLQLEGNHFVGEIPQSLSKCFVL------------EGLFLNNNSLSGKIPRWLGNLT-RL 459
W ++ N V ++P + S C +L EGL NSL+ W+ L+ R
Sbjct: 289 WSDIQDNFSVTQVPFTESACLLLIQPHYASDLDKVEGLTFQQNSLN-----WMKKLSPRT 343
Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 502
H+ MP+ L+G D+ D LP+ H
Sbjct: 344 IHLTMPQLVLQGSY-------------DLQDLLAQAELPAILH 373
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 100 LQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANM 159
+ ++ ++M SL+ L + L + +S DR + VLN++ N L GS+ CL
Sbjct: 395 VALMTKNMSSLETLDV---SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449
Query: 160 TSLRILDVSSNQLTGSISSSP--LVHLTSIEELYLSNNHFQ 198
+++LD+ +N+ I S P + HL +++EL +++N +
Sbjct: 450 PKVKVLDLHNNR----IMSIPKDVTHLQALQELNVASNQLK 486
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 503 PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562
P + + +HL N + +L+ G F + L L+L+ N+L D L++L+HL L
Sbjct: 39 PTTTQVLHLYINQI-TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHI 97
Query: 563 NNLE 566
N L+
Sbjct: 98 NQLK 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,595,498
Number of Sequences: 62578
Number of extensions: 690047
Number of successful extensions: 2264
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 502
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)