Query 039739
Match_columns 628
No_of_seqs 258 out of 3077
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 12:46:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.3E-53 2E-57 477.6 37.4 522 31-598 69-592 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.8E-51 1.5E-55 462.3 34.4 512 55-610 68-584 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-34 2.5E-39 279.2 6.1 381 138-599 80-466 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.1E-34 4.5E-39 277.4 6.3 361 238-604 79-443 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.4E-34 5.2E-39 265.0 -11.4 476 81-590 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 7.8E-34 1.7E-38 261.6 -13.6 477 31-566 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.3E-31 2.9E-36 271.8 -3.5 462 10-517 3-465 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 7.6E-31 1.7E-35 254.9 -3.3 391 108-615 7-400 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.5E-30 3.3E-35 264.3 -3.3 504 36-587 3-510 (1081)
10 KOG0444 Cytoskeletal regulator 99.9 1.6E-28 3.6E-33 238.7 -1.6 371 2-422 4-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.4E-26 222.1 26.5 320 254-591 580-907 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.4E-20 5.3E-25 212.4 28.5 341 128-540 550-904 (1153)
13 KOG4237 Extracellular matrix p 99.8 3.9E-22 8.5E-27 184.5 -3.9 410 109-587 68-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 2.7E-18 5.9E-23 181.2 17.7 254 312-608 223-476 (788)
15 KOG4237 Extracellular matrix p 99.8 1.2E-20 2.6E-25 174.8 -2.5 291 55-372 66-358 (498)
16 PRK15387 E3 ubiquitin-protein 99.7 2.9E-17 6.2E-22 173.6 17.3 268 262-576 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 2E-16 4.4E-21 168.4 13.6 223 288-542 179-401 (754)
18 cd00116 LRR_RI Leucine-rich re 99.7 8.6E-18 1.9E-22 166.9 2.1 60 529-588 250-318 (319)
19 cd00116 LRR_RI Leucine-rich re 99.6 2.8E-17 6.1E-22 163.2 1.5 156 409-565 137-319 (319)
20 PRK15370 E3 ubiquitin-protein 99.6 2.5E-15 5.4E-20 160.1 14.5 244 314-590 181-428 (754)
21 KOG0617 Ras suppressor protein 99.6 1.4E-17 3E-22 136.6 -4.2 165 405-576 29-195 (264)
22 KOG0617 Ras suppressor protein 99.5 9.6E-16 2.1E-20 125.9 -4.6 153 31-198 33-186 (264)
23 KOG3207 Beta-tubulin folding c 99.3 7.1E-13 1.5E-17 125.5 2.4 214 3-224 119-340 (505)
24 KOG3207 Beta-tubulin folding c 99.2 2.7E-12 5.9E-17 121.6 1.3 183 335-517 145-339 (505)
25 KOG1909 Ran GTPase-activating 99.2 2E-12 4.4E-17 119.1 -1.7 139 356-494 88-254 (382)
26 KOG1909 Ran GTPase-activating 99.2 2.1E-12 4.6E-17 119.0 -2.6 31 23-53 22-52 (382)
27 KOG1259 Nischarin, modulator o 99.1 2.4E-11 5.2E-16 109.5 0.4 203 354-566 208-412 (490)
28 KOG0532 Leucine-rich repeat (L 99.1 7E-12 1.5E-16 122.7 -3.3 190 388-587 78-270 (722)
29 KOG4341 F-box protein containi 99.0 7.6E-12 1.7E-16 118.0 -5.4 111 7-118 140-252 (483)
30 KOG1259 Nischarin, modulator o 99.0 8.7E-11 1.9E-15 105.9 1.4 141 452-599 279-420 (490)
31 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6E-15 98.8 4.1 125 456-585 18-148 (175)
32 KOG4341 F-box protein containi 99.0 3.5E-11 7.6E-16 113.6 -3.2 267 2-272 161-436 (483)
33 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.7E-14 111.4 6.7 178 409-595 116-295 (394)
34 PF14580 LRR_9: Leucine-rich r 98.9 4.4E-09 9.6E-14 91.3 6.8 129 3-144 17-148 (175)
35 KOG2120 SCF ubiquitin ligase, 98.8 1.5E-10 3.3E-15 104.3 -4.1 184 32-220 186-373 (419)
36 PF13855 LRR_8: Leucine rich r 98.8 3.3E-09 7.1E-14 75.4 3.4 61 529-589 1-61 (61)
37 PLN03150 hypothetical protein; 98.8 8.5E-09 1.8E-13 110.2 7.4 93 506-599 420-512 (623)
38 COG4886 Leucine-rich repeat (L 98.8 1.8E-08 4E-13 102.9 8.8 174 311-494 116-290 (394)
39 PLN03150 hypothetical protein; 98.7 2.8E-08 6E-13 106.3 9.0 109 459-591 420-529 (623)
40 KOG0532 Leucine-rich repeat (L 98.7 9.3E-10 2E-14 108.1 -2.5 193 310-514 74-270 (722)
41 KOG4658 Apoptotic ATPase [Sign 98.7 2.7E-08 5.9E-13 108.7 8.0 303 287-599 523-851 (889)
42 KOG2120 SCF ubiquitin ligase, 98.7 2.5E-09 5.4E-14 96.7 0.0 183 6-196 186-374 (419)
43 KOG4658 Apoptotic ATPase [Sign 98.7 3E-08 6.5E-13 108.3 6.7 63 307-371 567-629 (889)
44 PF13855 LRR_8: Leucine rich r 98.6 3.6E-08 7.9E-13 70.0 3.9 59 109-171 2-60 (61)
45 KOG2982 Uncharacterized conser 98.6 7.5E-09 1.6E-13 93.6 -0.8 212 7-224 47-263 (418)
46 KOG0531 Protein phosphatase 1, 98.6 9.9E-09 2.1E-13 104.9 -0.3 222 356-591 91-319 (414)
47 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.6E-13 104.3 -1.5 195 286-494 71-268 (414)
48 KOG2982 Uncharacterized conser 98.4 1.6E-07 3.5E-12 85.2 2.4 228 361-590 46-290 (418)
49 KOG3665 ZYG-1-like serine/thre 98.4 1.6E-07 3.5E-12 100.0 2.5 108 6-120 123-232 (699)
50 COG5238 RNA1 Ran GTPase-activa 98.4 5.5E-08 1.2E-12 87.0 -1.0 31 23-53 22-52 (388)
51 KOG3665 ZYG-1-like serine/thre 98.3 1.2E-07 2.5E-12 101.1 0.8 212 30-296 59-284 (699)
52 COG5238 RNA1 Ran GTPase-activa 98.3 1.2E-07 2.6E-12 84.9 0.6 97 101-198 24-133 (388)
53 KOG1859 Leucine-rich repeat pr 98.2 2.7E-08 5.9E-13 100.8 -7.3 126 82-222 165-291 (1096)
54 KOG1859 Leucine-rich repeat pr 98.1 4.9E-08 1.1E-12 99.0 -6.9 86 130-222 181-266 (1096)
55 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6E-11 54.9 3.4 40 553-594 1-40 (44)
56 PRK15386 type III secretion pr 97.9 3.1E-05 6.7E-10 76.1 8.4 169 429-623 48-224 (426)
57 PRK15386 type III secretion pr 97.9 6.4E-05 1.4E-09 73.9 9.4 136 383-539 50-187 (426)
58 KOG4579 Leucine-rich repeat (L 97.9 7.4E-07 1.6E-11 71.3 -3.6 60 529-590 77-136 (177)
59 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.7E-10 50.4 3.7 37 529-566 1-37 (44)
60 KOG1644 U2-associated snRNP A' 97.8 5.7E-05 1.2E-09 65.2 6.0 107 334-443 40-150 (233)
61 KOG1644 U2-associated snRNP A' 97.7 5.4E-05 1.2E-09 65.3 5.1 108 32-147 43-151 (233)
62 KOG1947 Leucine rich repeat pr 97.7 4.7E-06 1E-10 88.1 -2.2 13 552-564 426-438 (482)
63 KOG1947 Leucine rich repeat pr 97.6 4.6E-06 1E-10 88.1 -2.9 138 27-168 184-329 (482)
64 PF13306 LRR_5: Leucine rich r 97.6 0.00017 3.6E-09 60.5 7.1 122 355-483 7-128 (129)
65 KOG2739 Leucine-rich acidic nu 97.5 4.4E-05 9.6E-10 68.9 2.3 106 4-114 42-149 (260)
66 PF13306 LRR_5: Leucine rich r 97.5 0.00027 5.9E-09 59.2 6.6 119 335-460 11-129 (129)
67 KOG4579 Leucine-rich repeat (L 97.4 1.5E-05 3.2E-10 64.1 -2.3 82 107-195 52-133 (177)
68 KOG2123 Uncharacterized conser 96.8 5.5E-05 1.2E-09 68.5 -4.4 100 384-487 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.8 0.00062 1.3E-08 61.7 1.7 88 55-149 42-129 (260)
70 KOG2123 Uncharacterized conser 96.2 0.00045 9.7E-09 62.8 -2.6 104 31-142 19-123 (388)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0032 6.9E-08 33.6 0.9 21 578-599 1-21 (22)
72 KOG4308 LRR-containing protein 95.8 0.0001 2.2E-09 75.6 -10.1 193 7-224 89-304 (478)
73 KOG3864 Uncharacterized conser 95.3 0.003 6.6E-08 54.9 -1.0 85 32-119 102-187 (221)
74 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 31.7 0.8 18 555-573 2-19 (22)
75 PF13504 LRR_7: Leucine rich r 94.4 0.027 5.8E-07 27.8 1.3 16 578-594 2-17 (17)
76 KOG3864 Uncharacterized conser 94.3 0.0072 1.6E-07 52.7 -1.3 85 57-147 102-187 (221)
77 KOG4308 LRR-containing protein 91.8 0.0012 2.6E-08 67.8 -11.6 89 58-148 89-184 (478)
78 smart00369 LRR_TYP Leucine-ric 91.7 0.14 3.1E-06 28.5 1.9 21 576-597 1-21 (26)
79 smart00370 LRR Leucine-rich re 91.7 0.14 3.1E-06 28.5 1.9 21 576-597 1-21 (26)
80 PF13516 LRR_6: Leucine Rich r 91.3 0.059 1.3E-06 29.4 0.0 21 31-51 2-22 (24)
81 smart00369 LRR_TYP Leucine-ric 85.6 0.74 1.6E-05 25.5 2.0 13 554-566 3-15 (26)
82 smart00370 LRR Leucine-rich re 85.6 0.74 1.6E-05 25.5 2.0 13 554-566 3-15 (26)
83 smart00367 LRR_CC Leucine-rich 84.9 0.73 1.6E-05 25.6 1.7 23 30-52 1-24 (26)
84 smart00368 LRR_RI Leucine rich 84.9 0.79 1.7E-05 26.1 1.9 23 31-53 2-24 (28)
85 KOG4242 Predicted myosin-I-bin 80.9 5.3 0.00011 40.2 6.9 110 31-147 165-279 (553)
86 smart00365 LRR_SD22 Leucine-ri 79.9 1.6 3.5E-05 24.3 1.8 19 4-22 1-19 (26)
87 smart00364 LRR_BAC Leucine-ric 78.4 1.5 3.2E-05 24.4 1.3 19 577-596 2-20 (26)
88 KOG3763 mRNA export factor TAP 77.5 1.2 2.6E-05 45.5 1.5 85 28-115 215-308 (585)
89 KOG0473 Leucine-rich repeat pr 75.0 0.11 2.5E-06 46.4 -5.6 84 107-198 41-124 (326)
90 KOG0473 Leucine-rich repeat pr 73.0 0.14 2.9E-06 45.9 -5.6 64 525-590 61-124 (326)
91 KOG4242 Predicted myosin-I-bin 59.7 32 0.00069 35.0 6.9 34 337-370 355-390 (553)
92 KOG3763 mRNA export factor TAP 59.5 6.1 0.00013 40.7 2.1 85 55-142 217-307 (585)
93 PF07723 LRR_2: Leucine Rich R 24.0 39 0.00084 18.7 0.7 13 7-19 2-14 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.3e-53 Score=477.59 Aligned_cols=522 Identities=31% Similarity=0.462 Sum_probs=389.9
Q ss_pred CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739 31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL 110 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 110 (628)
.+++.|+++++.+++..+..+.. +++|+.|++++|.+.+.+|...+.++++|++|++++| .+.+..+. +. +++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n--~l~~~~p~--~~-l~~L 142 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN--NFTGSIPR--GS-IPNL 142 (968)
T ss_pred CcEEEEEecCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC--ccccccCc--cc-cCCC
Confidence 35667777776666666666666 6777777777776665555544556777777777766 44443332 22 6677
Q ss_pred cEEeeccccCC-CCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccE
Q 039739 111 KYLSLFGSILG-TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 189 (628)
Q Consensus 111 ~~L~l~~~~~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~ 189 (628)
++|++++|.+. . ++ ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|. .+.++++|+.
T Consensus 143 ~~L~Ls~n~~~~~----~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~ 216 (968)
T PLN00113 143 ETLDLSNNMLSGE----IP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKW 216 (968)
T ss_pred CEEECcCCccccc----CC-hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccE
Confidence 77777776663 2 33 4566777777777777776666677777777777777777776655555 5667777777
Q ss_pred EEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEc
Q 039739 190 LYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDL 269 (628)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 269 (628)
|++++|.+.+..+ ..+..+++|++|++++|.+.+ ..|..+..+++|+.|++
T Consensus 217 L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~----------------------------~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 217 IYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTG----------------------------PIPSSLGNLKNLQYLFL 267 (968)
T ss_pred EECcCCccCCcCC-hhHhcCCCCCEEECcCceecc----------------------------ccChhHhCCCCCCEEEC
Confidence 7777776654333 345666666666666554432 23445666677777777
Q ss_pred cCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCC
Q 039739 270 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD 349 (628)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~ 349 (628)
++|.+.+..|..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+.
T Consensus 268 ~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 268 YQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFS 345 (968)
T ss_pred cCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCc
Confidence 7777766666665 56777777777777777666666777788888888888777777766655 778888888888887
Q ss_pred CcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccc
Q 039739 350 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSL 429 (628)
Q Consensus 350 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 429 (628)
+..|..+..+++|+.|++++|++.+.++..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 77777788888888888888887766665443 36788888888888877777777788888888888888887788888
Q ss_pred cCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccE
Q 039739 430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQ 508 (628)
Q Consensus 430 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~ 508 (628)
..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..|..+. +++|+.
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCE
Confidence 888888888888888887777777788888888888888876666554 457888888888888877776554 778888
Q ss_pred EecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCc
Q 039739 509 VHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS 588 (628)
Q Consensus 509 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~ 588 (628)
|++++|.+.+.+|.. +.++++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|+.+++++|+
T Consensus 504 L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 504 LKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EECcCCcceeeCChH-HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 899999888777776 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccc
Q 039739 589 LHGSIPLCLD 598 (628)
Q Consensus 589 ~~~~ip~~~~ 598 (628)
+.+.+|+.-.
T Consensus 583 l~~~~p~~~~ 592 (968)
T PLN00113 583 LHGSLPSTGA 592 (968)
T ss_pred ceeeCCCcch
Confidence 9999997644
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.8e-51 Score=462.34 Aligned_cols=512 Identities=31% Similarity=0.449 Sum_probs=456.7
Q ss_pred CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccC-CCCCCcccccccc
Q 039739 55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL-GTNSSRILDRGLC 133 (628)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~ 133 (628)
..+++.|+++++.+.+..+. .|..+++|++|++++| .+.+.++..+...+++|++|++++|.+ +. ++. .
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~----~p~---~ 137 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTGS----IPR---G 137 (968)
T ss_pred CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCccccc----cCc---c
Confidence 35799999999988876654 7899999999999999 677778877774499999999999988 44 442 5
Q ss_pred CCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCccc
Q 039739 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLK 213 (628)
Q Consensus 134 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 213 (628)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+ ..+..+++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCcc
Confidence 688999999999999988999999999999999999999877877 79999999999999998875443 5678888999
Q ss_pred EEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEE
Q 039739 214 SFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLS 293 (628)
Q Consensus 214 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 293 (628)
.|++++|.+.+ .+|..+..+++|++|++++|.+.+..|..+ ..+++|+.|+
T Consensus 216 ~L~L~~n~l~~----------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ 266 (968)
T PLN00113 216 WIYLGYNNLSG----------------------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLF 266 (968)
T ss_pred EEECcCCccCC----------------------------cCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEE
Confidence 99988776532 355667888999999999999988888776 7899999999
Q ss_pred eecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCccc
Q 039739 294 LVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373 (628)
Q Consensus 294 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 373 (628)
+++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|+.|++.+|.+.+..|..+..+++|+.|++++|.+.
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 9999998888888899999999999999998888887765 899999999999999889999999999999999999998
Q ss_pred CccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccc
Q 039739 374 GEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWL 453 (628)
Q Consensus 374 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 453 (628)
+.+|... ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+
T Consensus 346 ~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 346 GEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred CcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 6677644 458999999999999988888888889999999999999998999999999999999999999998899999
Q ss_pred cCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccE
Q 039739 454 GNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVT 533 (628)
Q Consensus 454 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 533 (628)
..++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+...+|+.|++++|++.+.++.. +.++++|+.
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~ 503 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQ 503 (968)
T ss_pred hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh-hhhhhccCE
Confidence 9999999999999999988888889999999999999999988888888899999999999998887776 889999999
Q ss_pred EECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccc----ccccccCC
Q 039739 534 LDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT----LHESYNNS 609 (628)
Q Consensus 534 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~----~~~~~~~~ 609 (628)
|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..|..+++|+.|++++|++++.+|+.+.+++ +...+|+.
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988754 44445554
Q ss_pred c
Q 039739 610 S 610 (628)
Q Consensus 610 ~ 610 (628)
.
T Consensus 584 ~ 584 (968)
T PLN00113 584 H 584 (968)
T ss_pred e
Confidence 3
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=279.19 Aligned_cols=381 Identities=24% Similarity=0.244 Sum_probs=277.4
Q ss_pred CcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEec
Q 039739 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYA 217 (628)
Q Consensus 138 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 217 (628)
-+.|++++|.+...-+..|.++++|+++++..|.++ .+|. ..+-..+|+.|++.+|.+. .+..+.+..++.|+.+++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 355888888777666777778888888888888777 7776 3444455778887777665 333344444555555555
Q ss_pred cCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecC
Q 039739 218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVND 297 (628)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (628)
+.|.+ . .++..-+..-.++++|++..|
T Consensus 157 SrN~i----------------------------------------------------s-~i~~~sfp~~~ni~~L~La~N 183 (873)
T KOG4194|consen 157 SRNLI----------------------------------------------------S-EIPKPSFPAKVNIKKLNLASN 183 (873)
T ss_pred hhchh----------------------------------------------------h-cccCCCCCCCCCceEEeeccc
Confidence 44433 2 122111223356777777777
Q ss_pred CCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccc
Q 039739 298 SLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 377 (628)
Q Consensus 298 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 377 (628)
++++.....|.++..|..|+|++|.++ .+|...++.+++|+.|+|..|.+...-.-.|.++++|+.|.+..|.+. .+.
T Consensus 184 ~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~ 261 (873)
T KOG4194|consen 184 RITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLD 261 (873)
T ss_pred cccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-ccc
Confidence 777776777888888999999999988 888888887889999999888887444556888888888888888887 777
Q ss_pred hhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCC
Q 039739 378 EHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT 457 (628)
Q Consensus 378 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 457 (628)
.++|-++.++++|+++.|++.......+.++.+|+.|+++.|.|..+-+..+..+++|++|++++|.+....+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 77777788888888888887766556666788888888888888777777778888888888888888766677777788
Q ss_pred CcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECC
Q 039739 458 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537 (628)
Q Consensus 458 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 537 (628)
.|++|.+++|++.......|..+++|+.||++.|.+...+.+ ...+|.++++|+.|++.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED---------------------aa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED---------------------AAVAFNGLPSLRKLRLT 400 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec---------------------chhhhccchhhhheeec
Confidence 888888888887766666677788888888887776632221 11236677888888888
Q ss_pred CcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEEC------CCCcccccccccccc
Q 039739 538 YNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL------SNNSLHGSIPLCLDN 599 (628)
Q Consensus 538 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l------~~~~~~~~ip~~~~~ 599 (628)
+|++.......|..+.+|+.|+|.+|.|-..-|+.|..+ .|++|-+ ..|++. ++|+.+..
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~-Wl~qWl~~ 466 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK-WLAQWLYR 466 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH-HHHHHHHh
Confidence 888876666778888888888888888876778888877 7777755 456665 66665544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-34 Score=277.39 Aligned_cols=361 Identities=25% Similarity=0.288 Sum_probs=315.9
Q ss_pred cceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEE
Q 039739 238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD 317 (628)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 317 (628)
.-+.|++ .++.+...-+..+.++++|+.+++.+|.+. .+|... +....++.|.+.+|.+.......+..++.|++|+
T Consensus 79 ~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4445555 555566666778899999999999999887 667653 4455699999999999988888899999999999
Q ss_pred ccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCcc
Q 039739 318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397 (628)
Q Consensus 318 l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 397 (628)
|+.|.|. .++...++.-.+++.|+|..|.|+..-...|..+.+|..|.++.|+++ .+|...|+.+++|+.|++..|.+
T Consensus 156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence 9999998 777766665578999999999999877778999999999999999999 99999999999999999999998
Q ss_pred CCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccc
Q 039739 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 477 (628)
Q Consensus 398 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 477 (628)
...-...|.++++|+.|.+..|++......+|..+.++++|++..|.+...-..++.++++|++|+++.|.|....+.++
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 76556788899999999999999987778899999999999999999987777889999999999999999999999999
Q ss_pred cCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc---hhhcCCC
Q 039739 478 CQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS---DWVDGLS 553 (628)
Q Consensus 478 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~ 553 (628)
..+++|++|++++|+++.-.+..+. +.+|++|+|++|.++ .+..++|..+.+|+.|||+.|.++..+. ..|..++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 9999999999999999977666665 899999999999995 7778889999999999999998865433 4578899
Q ss_pred CCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccccccccccc
Q 039739 554 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHE 604 (628)
Q Consensus 554 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~ 604 (628)
+|+.|++.||++...-...|..+++|+.|+|.+|.|...=|..|++..++.
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~ 443 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE 443 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence 999999999999955566899999999999999999977788998865443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-34 Score=265.01 Aligned_cols=476 Identities=23% Similarity=0.329 Sum_probs=297.4
Q ss_pred CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCC
Q 039739 81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMT 160 (628)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 160 (628)
..|+.+.++++.+ ......+.+ +..+.+|++.++.... .|+ +++.+..++.++.++|.+. .+|..+....
T Consensus 45 v~l~~lils~N~l---~~l~~dl~n-L~~l~vl~~~~n~l~~----lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 45 VDLQKLILSHNDL---EVLREDLKN-LACLTVLNVHDNKLSQ----LPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred cchhhhhhccCch---hhccHhhhc-ccceeEEEeccchhhh----CCH-HHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 4566677776632 223334444 6777777777776655 553 6777777777777777776 6677777777
Q ss_pred CCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739 161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240 (628)
Q Consensus 161 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 240 (628)
+|+.++.++|.+. .+++ .++.+..++.++..+|++.. ..+.+..+.++..+++.+|.+....+. .+....++
T Consensus 115 ~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~m~~L~ 186 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPEN----HIAMKRLK 186 (565)
T ss_pred hhhhhhcccccee-ecCc-hHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHH----HHHHHHHH
Confidence 7777777777776 5666 57777777777777776652 223456666677777666655432211 11122444
Q ss_pred eeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccC
Q 039739 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISN 320 (628)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 320 (628)
+++. +...-+.+|..++.+.+|..|++..|++. .+|+. ..|..|+++.+..+.+.-.-......++.+..|++++
T Consensus 187 ~ld~--~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef--~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 187 HLDC--NSNLLETLPPELGGLESLELLYLRRNKIR-FLPEF--PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred hccc--chhhhhcCChhhcchhhhHHHHhhhcccc-cCCCC--CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence 4444 22333345555555555555555555554 44422 4555555555555544332222333555555566655
Q ss_pred CcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcC-----CccccEEE----
Q 039739 321 NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG-----CVNLESLA---- 391 (628)
Q Consensus 321 ~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~L~~L~---- 391 (628)
|.++ .+|++++. +.+|++|++++|.++ .+|..++++ .|+.|.+.||.+. ++-..+..+ ++.|+.-.
T Consensus 262 Nklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 262 NKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCC
Confidence 5554 55555554 455556666555555 444555555 5555555555543 222221110 11122100
Q ss_pred ccCCc------cC--CcccccccCCCCCcEEEccCccCcCcccccccCCC---cccEEEccCCcCCCccCccccCCCCcc
Q 039739 392 LSNNS------LE--GHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF---VLEGLFLNNNSLSGKIPRWLGNLTRLQ 460 (628)
Q Consensus 392 l~~~~------l~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~L~ 460 (628)
++... .+ ...+.....+-+.+.|++++-+++ .+|...+... -....+++.|.+. +.|..+..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence 00000 00 011112234556788888887777 4453333322 3788899999887 6677666665554
Q ss_pred e-EECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCc
Q 039739 461 H-IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539 (628)
Q Consensus 461 ~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 539 (628)
+ +.++.|.+. ..|..++.+++|..|++++|.+-+...+.+...+|+.++++.|++ ..+|.. +.-+..++.+-.++|
T Consensus 415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPEC-LYELQTLETLLASNN 491 (565)
T ss_pred HHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHH-HhhHHHHHHHHhccc
Confidence 4 455555554 778889999999999999998885555666688899999999988 367776 666777888888889
Q ss_pred ccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739 540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 540 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
++....+..+.++.+|..||+.+|.+. .+|..++++++|++|+++||++.
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999777777999999999999999999 89999999999999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=7.8e-34 Score=261.63 Aligned_cols=477 Identities=22% Similarity=0.294 Sum_probs=362.1
Q ss_pred CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739 31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL 110 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 110 (628)
..++.+.+++|.+... ...+.+ +..|..|++++++.+...+ +++++..++.++.+.+.+ ..+|+.++. ...+
T Consensus 45 v~l~~lils~N~l~~l-~~dl~n-L~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~l---s~lp~~i~s-~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL-REDLKN-LACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKL---SELPEQIGS-LISL 116 (565)
T ss_pred cchhhhhhccCchhhc-cHhhhc-ccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchH---hhccHHHhh-hhhh
Confidence 5678888988887633 445667 8889999999998875544 588899999999988733 467788888 8899
Q ss_pred cEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEE
Q 039739 111 KYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190 (628)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L 190 (628)
+.++++.+.+.. ++ ..++.+..|+.++..+|++. ..|..+.++.+|..+++.+|++. .+|+. ...++.|+++
T Consensus 117 ~~l~~s~n~~~e----l~-~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~-~i~m~~L~~l 188 (565)
T KOG0472|consen 117 VKLDCSSNELKE----LP-DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPEN-HIAMKRLKHL 188 (565)
T ss_pred hhhhccccceee----cC-chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHH-HHHHHHHHhc
Confidence 999998888755 66 48888999999999999988 67888999999999999999988 77773 4448899999
Q ss_pred EcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEcc
Q 039739 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLS 270 (628)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 270 (628)
+...|.+. .++ ..++.+.+|+.|++..|.+. .+| .|..|..|+++.++
T Consensus 189 d~~~N~L~-tlP-~~lg~l~~L~~LyL~~Nki~-----------------------------~lP-ef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 189 DCNSNLLE-TLP-PELGGLESLELLYLRRNKIR-----------------------------FLP-EFPGCSLLKELHVG 236 (565)
T ss_pred ccchhhhh-cCC-hhhcchhhhHHHHhhhcccc-----------------------------cCC-CCCccHHHHHHHhc
Confidence 99888765 233 46788888888888887653 133 57788899999999
Q ss_pred CCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCC
Q 039739 271 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDG 350 (628)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~ 350 (628)
.|.+. .+|.....+++++..|++.+++++. .|..+.-+.+|++|++++|.++ .+|...+. + .|+.|.+.+|++..
T Consensus 237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRT 311 (565)
T ss_pred ccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHH
Confidence 99887 7888888899999999999999875 5666777889999999999998 78888876 5 89999999998752
Q ss_pred cccccccCCCC---ccEE-------ECcCCc---c-cCccchhhh---cCCccccEEEccCCccCCccccccc--CCCCC
Q 039739 351 SIPSSFGNMKF---LQIL-------DLSNNH---L-TGEIPEHLV---VGCVNLESLALSNNSLEGHMFSRNF--NLTNL 411 (628)
Q Consensus 351 ~~~~~~~~~~~---L~~L-------~l~~~~---~-~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L 411 (628)
.-. .+-++.. |++| .++... - ....+...+ ...-+.+.|+++.-+++......|. .-.-.
T Consensus 312 iRr-~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 312 IRR-EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHH-HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 111 1111110 1111 111110 0 001111111 1234577788887777654433332 22347
Q ss_pred cEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCC
Q 039739 412 RWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491 (628)
Q Consensus 412 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 491 (628)
...++++|++. ++|..+..++.+.+..+.++...+.++..+..+++|+.|++++|.+. ..|..+..+..|+.|+++.|
T Consensus 391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence 78899999987 77887877777655544445555588888999999999999999887 56777888889999999999
Q ss_pred cCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 492 NISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 492 ~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
.|. ..|.+.+ +..++.+..++|++ +.+++..+.++.+|..||+.+|.+. .+|..++++++|++|+++||++.
T Consensus 469 rFr-~lP~~~y~lq~lEtllas~nqi-~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 469 RFR-MLPECLYELQTLETLLASNNQI-GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cchHHHhhHHHHHHHHhccccc-cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 988 6676665 66777777777888 5666666899999999999999998 67888999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-31 Score=271.82 Aligned_cols=462 Identities=22% Similarity=0.255 Sum_probs=233.2
Q ss_pred EeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecc
Q 039739 10 LYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDME 89 (628)
Q Consensus 10 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 89 (628)
+|.+.+++.- +|.-+.....++.|+++.|.+-..=...+.. +-+|+.|+++++.+... |. .+..+.+|+.|+++
T Consensus 3 vd~s~~~l~~---ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~s 76 (1081)
T KOG0618|consen 3 VDASDEQLEL---IPEQILNNEALQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNLS 76 (1081)
T ss_pred cccccccCcc---cchhhccHHHHHhhhccccccccCchHHhhh-eeeeEEeeccccccccC-Cc-hhhhHHHHhhcccc
Confidence 3444444433 4555555555777777776543221333333 55577777777766543 22 46666777777777
Q ss_pred cchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccc
Q 039739 90 GALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS 169 (628)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 169 (628)
.+.+ ...+...++ +.+|+++.|.++.... .| ..+..+++|++|++++|.+. ..|..+..+..+..++.++
T Consensus 77 ~n~i---~~vp~s~~~-~~~l~~lnL~~n~l~~----lP-~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 77 RNYI---RSVPSSCSN-MRNLQYLNLKNNRLQS----LP-ASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred hhhH---hhCchhhhh-hhcchhheeccchhhc----Cc-hhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhc
Confidence 7633 223345555 6777777777666644 44 46777777777777777766 5566666666666666666
Q ss_pred cccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCC
Q 039739 170 NQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249 (628)
Q Consensus 170 ~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 249 (628)
|.....++. . .++.+++..+.+.+.+.. ....+.. .+++.+|.+.... ......++.+.. ..+.
T Consensus 147 N~~~~~lg~-----~-~ik~~~l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~~~d------ls~~~~l~~l~c-~rn~ 210 (1081)
T KOG0618|consen 147 NEKIQRLGQ-----T-SIKKLDLRLNVLGGSFLI-DIYNLTH--QLDLRYNEMEVLD------LSNLANLEVLHC-ERNQ 210 (1081)
T ss_pred chhhhhhcc-----c-cchhhhhhhhhcccchhc-chhhhhe--eeecccchhhhhh------hhhccchhhhhh-hhcc
Confidence 622112222 1 144555554444332221 1122222 3444444332000 000001111111 0000
Q ss_pred CCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccch
Q 039739 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPV 329 (628)
Q Consensus 250 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 329 (628)
.. ..-..-++|+.|..+.|.+....+. ..-.+|+.++++.+.+.... ..+..+.+|+.++...|.++ .+|.
T Consensus 211 ls----~l~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ 281 (1081)
T KOG0618|consen 211 LS----ELEISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPL 281 (1081)
T ss_pred cc----eEEecCcchheeeeccCcceeeccc---cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHH
Confidence 00 0001223444555544444311110 12234455555554444322 44445555666666666554 5555
Q ss_pred hhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcc-ccEEEccCCccCCcccccccCC
Q 039739 330 EIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN-LESLALSNNSLEGHMFSRNFNL 408 (628)
Q Consensus 330 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~ 408 (628)
.+.. ..+|+.|.+..|.+. .+|....+.++|++|++..|++. .+|...+..... |+.|..+.+.+....-..-..+
T Consensus 282 ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 282 RISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred HHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 5544 456666666666655 44555555666666666666665 555444333332 5555555555443221111234
Q ss_pred CCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEc
Q 039739 409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI 488 (628)
Q Consensus 409 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 488 (628)
+.|+.|++.+|.+++.....+...++|+.|++++|.+.......+.+++.|++|+++||+++ .+|..+..++.|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 55666666666666555555566666666666666655444445566666666666666665 44455666666666666
Q ss_pred cCCcCcCCCCCCCCCCcccEEecCCCcCc
Q 039739 489 SDNNISGSLPSCFHPLSVEQVHLSKNMLH 517 (628)
Q Consensus 489 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 517 (628)
.+|++. ..|+....++|+.++++.|+++
T Consensus 438 hsN~l~-~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 438 HSNQLL-SFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred cCCcee-echhhhhcCcceEEecccchhh
Confidence 666655 4444444444444444444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=7.6e-31 Score=254.85 Aligned_cols=391 Identities=25% Similarity=0.351 Sum_probs=231.5
Q ss_pred CCccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739 108 PSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 186 (628)
Q Consensus 108 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~ 186 (628)
+-.+-.++++|.+ +. -.+.+...+++++-|.|..+.+. .+|..++.+.+|++|.+.+|++. .+-. .+..++.
T Consensus 7 pFVrGvDfsgNDFsg~----~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~ 79 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGD----RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPR 79 (1255)
T ss_pred ceeecccccCCcCCCC----cCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchh
Confidence 3344445555444 22 22234555555555555555554 44555555555555555555554 3322 3455555
Q ss_pred ccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccE
Q 039739 187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEY 266 (628)
Q Consensus 187 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 266 (628)
|+.+.+..|.+.. +.+|..+.++..|+.
T Consensus 80 LRsv~~R~N~LKn----------------------------------------------------sGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKN----------------------------------------------------SGIPTDIFRLKDLTI 107 (1255)
T ss_pred hHHHhhhcccccc----------------------------------------------------CCCCchhccccccee
Confidence 5555555554432 124555666677777
Q ss_pred EEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccc
Q 039739 267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN 346 (628)
Q Consensus 267 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~ 346 (628)
|++++|.+. .+|..+ .+-+++-.|++ ++|+|. .+|..++..+..|-.|+|++|
T Consensus 108 lDLShNqL~-EvP~~L-E~AKn~iVLNL------------------------S~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNL-EYAKNSIVLNL------------------------SYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred eecchhhhh-hcchhh-hhhcCcEEEEc------------------------ccCccc-cCCchHHHhhHhHhhhccccc
Confidence 777777665 555443 33344444444 444443 444444444444555555555
Q ss_pred cCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccC-CcccccccCCCCCcEEEccCccCcCcc
Q 039739 347 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLE-GHMFSRNFNLTNLRWLQLEGNHFVGEI 425 (628)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~~ 425 (628)
.+. .+|..+..+..|++|++++|.+. .+.......+.+|+.|.+++.+.+ ...+..+..+.+|..++++.|++. ..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 554 44444455555555555555433 221111112333444444443322 123334445555666666655555 45
Q ss_pred cccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCc
Q 039739 426 PQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 505 (628)
Q Consensus 426 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 505 (628)
|+.+..+++|+.|++++|.++ .+........+|++|+++.|+++ ..|.+++.+++|+.|-..+|+++.
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F---------- 305 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF---------- 305 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc----------
Confidence 555566666666666666555 33334444556666666666665 556666666666666666665542
Q ss_pred ccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECC
Q 039739 506 VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 585 (628)
Q Consensus 506 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 585 (628)
.-+|.+ ++.+.+|+.+...+|.+. .+|+++..|..|+.|.|++|++. .+|+++.-++-|+.||+.
T Consensus 306 ------------eGiPSG-IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 306 ------------EGIPSG-IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred ------------cCCccc-hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 246666 888999999999999887 89999999999999999999888 799999999999999999
Q ss_pred CCccccccccccccccccccccC-Ccccccc
Q 039739 586 NNSLHGSIPLCLDNTTLHESYNN-SSSLDKQ 615 (628)
Q Consensus 586 ~~~~~~~ip~~~~~~~~~~~~~~-~~~~~~~ 615 (628)
.|+.. .+|+-+.-.....+|.+ +.+++.|
T Consensus 371 eNpnL-VMPPKP~da~~~lefYNIDFSLq~Q 400 (1255)
T KOG0444|consen 371 ENPNL-VMPPKPNDARKKLEFYNIDFSLQHQ 400 (1255)
T ss_pred CCcCc-cCCCCcchhhhcceeeecceehhhH
Confidence 99999 89988877665566655 5677654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-30 Score=264.25 Aligned_cols=504 Identities=23% Similarity=0.212 Sum_probs=322.4
Q ss_pred EecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEee
Q 039739 36 LTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSL 115 (628)
Q Consensus 36 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 115 (628)
++++++... .++..+.. -..+..|++..|.+.... -+.+.+.-+|+.|+++++. .+..+..+.. +++|+.|++
T Consensus 3 vd~s~~~l~-~ip~~i~~-~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~---~~~fp~~it~-l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILN-NEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQ---ISSFPIQITL-LSHLRQLNL 75 (1081)
T ss_pred cccccccCc-ccchhhcc-HHHHHhhhccccccccCc-hHHhhheeeeEEeeccccc---cccCCchhhh-HHHHhhccc
Confidence 566666654 44555554 344888999888665432 3356667779999999974 3567777887 999999999
Q ss_pred ccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccC
Q 039739 116 FGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195 (628)
Q Consensus 116 ~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~ 195 (628)
+.|.+.. .+ ....++.+|++++|..|.+. .+|..+..+.+|++|+++.|.+. .+|. .+..++.+..+..++|
T Consensus 76 s~n~i~~----vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 76 SRNYIRS----VP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNN 147 (1081)
T ss_pred chhhHhh----Cc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcc
Confidence 9999866 66 58899999999999999887 88999999999999999999997 8888 7899999999999998
Q ss_pred eeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee-eeccCCCCCCcccccccccCCCccEEEccCCcc
Q 039739 196 HFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR-LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKM 274 (628)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 274 (628)
.... .++... ++.+++..+.+.+.+..... .+++ +++ ..+... -..+..+++|+.+....+.+
T Consensus 148 ~~~~-----~lg~~~-ik~~~l~~n~l~~~~~~~i~------~l~~~ldL-r~N~~~---~~dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 148 EKIQ-----RLGQTS-IKKLDLRLNVLGGSFLIDIY------NLTHQLDL-RYNEME---VLDLSNLANLEVLHCERNQL 211 (1081)
T ss_pred hhhh-----hhcccc-chhhhhhhhhcccchhcchh------hhheeeec-ccchhh---hhhhhhccchhhhhhhhccc
Confidence 3221 112222 66677766655544332221 2222 444 222222 12334555555555555544
Q ss_pred cCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccc
Q 039739 275 NGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPS 354 (628)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 354 (628)
.... ...++++.|....|.++... ......+|++++++.+.+. .+|.|+.. +++|+.+...+|.+. .+|.
T Consensus 212 s~l~-----~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ 281 (1081)
T KOG0618|consen 212 SELE-----ISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPL 281 (1081)
T ss_pred ceEE-----ecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHH
Confidence 3111 13355666666666555211 1223445667777776666 56666655 667777777666664 5555
Q ss_pred cccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCC-CcEEEccCccCcCcccc-cccCC
Q 039739 355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTN-LRWLQLEGNHFVGEIPQ-SLSKC 432 (628)
Q Consensus 355 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~-~~~~~ 432 (628)
.+....+|+.+....|.+. -++... ++...|++|++..|++.......+.-... |+.|..+.+++.. .|. .-...
T Consensus 282 ri~~~~~L~~l~~~~nel~-yip~~l-e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~ 358 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYNELE-YIPPFL-EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNH 358 (1081)
T ss_pred HHhhhhhHHHHHhhhhhhh-hCCCcc-cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhh
Confidence 5666666676666666654 444322 23566777777766665433333322222 5555555555442 221 11224
Q ss_pred CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739 433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512 (628)
Q Consensus 433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 512 (628)
+.|+.|++-+|.+++.....+.+..+|+.|+|+.|++.......+.++..|++|+++||+++...........|++|...
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 56777777777777766667777788888888888777555555777788888888888777433333347777777777
Q ss_pred CCcCcCCCCccccccCCCccEEECCCcccCCc-cchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCC
Q 039739 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN-ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 587 (628)
Q Consensus 513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 587 (628)
+|.+. ..| . +..+++|+.+|++.|+++.. +++... .++|++||++||.........|..+.++...++.-+
T Consensus 439 sN~l~-~fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 439 SNQLL-SFP-E-LAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCcee-ech-h-hhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 77774 445 3 66777888888888876532 333322 267888888888655456666666666655555544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.6e-28 Score=238.72 Aligned_cols=371 Identities=24% Similarity=0.337 Sum_probs=303.2
Q ss_pred CCCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccC
Q 039739 2 GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFK 81 (628)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 81 (628)
+-++..+-.|+++|.+++. ..|.....++.+++|.|....+. ..|.+++. +.+|++|.+.+|++..... .++.++
T Consensus 4 gVLpFVrGvDfsgNDFsg~-~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~vhG--ELs~Lp 78 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGD-RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLISVHG--ELSDLP 78 (1255)
T ss_pred cccceeecccccCCcCCCC-cCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHhhhh--hhccch
Confidence 4577888999999999863 67888888999999999998865 66999999 9999999999998875544 588999
Q ss_pred ccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCC
Q 039739 82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTS 161 (628)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 161 (628)
.||.+.++.|.+. ...+|..+.+ +..|.+|++++|.+.. .| ..+...+++-+|+||+|+|...-...|.++..
T Consensus 79 ~LRsv~~R~N~LK-nsGiP~diF~-l~dLt~lDLShNqL~E----vP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLK-NSGIPTDIFR-LKDLTILDLSHNQLRE----VP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhHHHhhhccccc-cCCCCchhcc-cccceeeecchhhhhh----cc-hhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 9999999998543 3457788888 9999999999999977 66 48889999999999999999554455778999
Q ss_pred CCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee
Q 039739 162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241 (628)
Q Consensus 162 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 241 (628)
|-.||+++|++. .+|+ .+..+..|+.|.+++|++. ......+-.+.+|++|.+++
T Consensus 152 LLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~---------------------- 206 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSN---------------------- 206 (1255)
T ss_pred Hhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccc----------------------
Confidence 999999999997 8888 7999999999999999875 22222333444555555544
Q ss_pred eeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCC
Q 039739 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNN 321 (628)
Q Consensus 242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 321 (628)
.......+|..+..+.+|..++++.|.+. .+|+-+ -.+++|+.|+++++.++.. ........+|++|+++.|
T Consensus 207 -----TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl-y~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 207 -----TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL-YKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN 278 (1255)
T ss_pred -----ccchhhcCCCchhhhhhhhhccccccCCC-cchHHH-hhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc
Confidence 33344567888889999999999999887 677766 4789999999999988753 334556678999999999
Q ss_pred cCCcccchhhhhhCCCccEEEcccccCC-CcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc
Q 039739 322 NFRGHIPVEIGDVLPSLFSLNISMNALD-GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH 400 (628)
Q Consensus 322 ~i~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 400 (628)
+++ .+|+.+++ ++.|+.|.+.+|.++ .-+|++++.+.+|+++...+|.+. -+|..+.. |++|+.|.++.|++. .
T Consensus 279 QLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR-C~kL~kL~L~~NrLi-T 353 (1255)
T KOG0444|consen 279 QLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR-CVKLQKLKLDHNRLI-T 353 (1255)
T ss_pred hhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh-hHHHHHhccccccee-e
Confidence 998 89999998 899999999998866 357889999999999999988875 77777664 999999999998875 3
Q ss_pred ccccccCCCCCcEEEccCccCc
Q 039739 401 MFSRNFNLTNLRWLQLEGNHFV 422 (628)
Q Consensus 401 ~~~~~~~~~~L~~L~l~~~~~~ 422 (628)
.+..+.-++.|+.|++..|+-.
T Consensus 354 LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCc
Confidence 5677778899999999988754
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-21 Score=222.09 Aligned_cols=320 Identities=21% Similarity=0.237 Sum_probs=230.7
Q ss_pred cccccccC-CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhh
Q 039739 254 FPKFLYHQ-HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIG 332 (628)
Q Consensus 254 ~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 332 (628)
+|..+..+ ++|+.|.+.++.+. .+|..+ ...+|+.|++.++.+.. .+..+..+++|+.++++++...+.+|. +.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence 34444443 45788888777664 556654 56778888888877654 334456778888888887754446664 33
Q ss_pred hhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCc
Q 039739 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLR 412 (628)
Q Consensus 333 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 412 (628)
.+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|... .+++|+.|++++|......+. ...+|+
T Consensus 655 -~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~ 728 (1153)
T PLN03210 655 -MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNIS 728 (1153)
T ss_pred -cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcC
Confidence 36788888888887666778888888888888888876555666543 478888888888864433322 245788
Q ss_pred EEEccCccCcCcccccccCCCcccEEEccCCcCCC-------ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCE
Q 039739 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG-------KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 485 (628)
Q Consensus 413 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 485 (628)
+|+++++.+. .+|..+ .+++|++|.+.++.... ..+......++|+.|++++|......|..+.++++|+.
T Consensus 729 ~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 729 WLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 8888888776 455443 56778888777643211 11112233578899999998777778888889999999
Q ss_pred EEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcC
Q 039739 486 LDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565 (628)
Q Consensus 486 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 565 (628)
|++++|...+..|....+++|+.|++++|.....++.. .++|+.|++++|.++ .+|.++..+++|+.|++++|+-
T Consensus 807 L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 807 LEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred EECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence 99998865556776667888999999988765555442 368999999999988 6788899999999999999855
Q ss_pred CccCCccccCCCCCcEEECCCCcccc
Q 039739 566 EGEVPVQLCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 566 ~~~~~~~l~~l~~L~~L~l~~~~~~~ 591 (628)
...+|..+..+++|+.+++++|+...
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cCccCcccccccCCCeeecCCCcccc
Confidence 55788888889999999999997553
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.4e-20 Score=212.42 Aligned_cols=341 Identities=19% Similarity=0.165 Sum_probs=155.3
Q ss_pred ccccccCCCCCcEEEccCCc------ccccCchhhhcC-CCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeee
Q 039739 128 LDRGLCSLVHLQVLNIAYND------LRGSLPWCLANM-TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIP 200 (628)
Q Consensus 128 ~~~~l~~l~~L~~L~L~~~~------~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~ 200 (628)
...+|.++.+|+.|.++.+. +...+|..+..+ .+|+.|.+.++.+. .+|. .+ ...+|++|++.++.+..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-
Confidence 33456666666666665432 122344444443 24666666666554 5554 23 34556666666555431
Q ss_pred cCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCch
Q 039739 201 ISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPT 280 (628)
Q Consensus 201 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 280 (628)
....+..+++|+.++++++... ..+| .+..+++|+.|++.+|.....+|.
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l----------------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNL----------------------------KEIP-DLSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCc----------------------------CcCC-ccccCCcccEEEecCCCCccccch
Confidence 1122334444555544433210 1111 133445555555555544444444
Q ss_pred hHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCC
Q 039739 281 WLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360 (628)
Q Consensus 281 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 360 (628)
.+ ..+++|+.|++++|.... .+|..+ .+++|+.|++++|......|.. .+
T Consensus 676 si-~~L~~L~~L~L~~c~~L~------------------------~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~ 725 (1153)
T PLN03210 676 SI-QYLNKLEDLDMSRCENLE------------------------ILPTGI--NLKSLYRLNLSGCSRLKSFPDI---ST 725 (1153)
T ss_pred hh-hccCCCCEEeCCCCCCcC------------------------ccCCcC--CCCCCCEEeCCCCCCccccccc---cC
Confidence 43 445555555555443222 333222 1344444444444332222221 23
Q ss_pred CccEEECcCCcccCccchhhhcCCccccEEEccCCccCC-------cccccccCCCCCcEEEccCccCcCcccccccCCC
Q 039739 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG-------HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF 433 (628)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 433 (628)
+|+.|+++++.+. .+|... .+++|++|.+.++.... ........+++|+.|++++|.....+|..+.+++
T Consensus 726 nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~ 802 (1153)
T PLN03210 726 NISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802 (1153)
T ss_pred CcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence 4444444444443 333321 23444444444322100 0000111234566666666555445555555566
Q ss_pred cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCC
Q 039739 434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSK 513 (628)
Q Consensus 434 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 513 (628)
+|+.|++++|.....+|..+ ++++|+.|++++|......|.. .++|+.|++++|.+.........+++|+.|++++
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence 66666666554433444433 4555666666655433233221 2455555665555542221222245555555555
Q ss_pred CcCcCCCCccccccCCCccEEECCCcc
Q 039739 514 NMLHGQLKRGTFFNSYSLVTLDLSYNR 540 (628)
Q Consensus 514 n~~~~~~~~~~~~~~~~L~~L~l~~~~ 540 (628)
|+-...++.. ...+++|+.+++++|.
T Consensus 879 C~~L~~l~~~-~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 879 CNNLQRVSLN-ISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCcCccCcc-cccccCCCeeecCCCc
Confidence 4433344443 4556666777776664
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=3.9e-22 Score=184.48 Aligned_cols=410 Identities=21% Similarity=0.209 Sum_probs=221.4
Q ss_pred CccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccc-cccccccCCCCCCCCCcc
Q 039739 109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS-NQLTGSISSSPLVHLTSI 187 (628)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~l~~~~l~~l~~L 187 (628)
.-..++|..|.+.. +|+++|+.+++||.|+|++|.|+...|++|..+++|.+|-+.+ |+|+ .++...|+.+.++
T Consensus 68 ~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 56678888888888 9999999999999999999999999999999999999887777 8888 8998899999999
Q ss_pred cEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEE
Q 039739 188 EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYV 267 (628)
Q Consensus 188 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 267 (628)
+-|.+..|++.. +..+.|..++++..|.+..|.+... -...+.....++.+
T Consensus 143 qrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i----------------------------~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 143 QRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSI----------------------------CKGTFQGLAAIKTL 193 (498)
T ss_pred HHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhh----------------------------ccccccchhccchH
Confidence 999998887763 3335566777777777666543211 11134445566666
Q ss_pred EccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccch-hhhhhCCCccEEEcccc
Q 039739 268 DLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPV-EIGDVLPSLFSLNISMN 346 (628)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~L~~~ 346 (628)
.+..+.+.... +++.+..... ..+..+++........+.+.++. .+.. .+......+.+=..+.|
T Consensus 194 hlA~np~icdC------nL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d 259 (498)
T KOG4237|consen 194 HLAQNPFICDC------NLPWLADDLA-------MNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSED 259 (498)
T ss_pred hhhcCcccccc------ccchhhhHHh-------hchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhcccc
Confidence 66666543211 1111111000 00111112211222222222222 1111 11110001111111122
Q ss_pred cCCCcccc-cccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcc
Q 039739 347 ALDGSIPS-SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEI 425 (628)
Q Consensus 347 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 425 (628)
.....-|. .|..+++|++|++++|+++ .+....|.+...+++|.+..|++......+|.++..|++|++++|+++...
T Consensus 260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 260 FPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred CcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 22222222 3556666666666666665 555555666666666666666665444455556666666666666666666
Q ss_pred cccccCCCcccEEEccCCcCCC-----ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC---C
Q 039739 426 PQSLSKCFVLEGLFLNNNSLSG-----KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS---L 497 (628)
Q Consensus 426 ~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~ 497 (628)
|.+|....+|.+|++-.|++.= .+.+++ .+.+..+..+ =.....++.+.+++..+.+. .
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl-----------r~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~ 405 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL-----------RKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGG 405 (498)
T ss_pred cccccccceeeeeehccCcccCccchHHHHHHH-----------hhCCCCCCCC--CCCCchhccccchhccccccccCC
Confidence 6666666666666665554320 011111 1111110000 01112233333333322211 1
Q ss_pred CCC----------CCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc
Q 039739 498 PSC----------FHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG 567 (628)
Q Consensus 498 ~~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 567 (628)
|+. ...+.+.++.=..|+....+|+++ ......|.+.+|.++ .+|.. .+.+| .+++++|+|..
T Consensus 406 ~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i---P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 406 PEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI---PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred ccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC---CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 110 002223332222233334455442 235667777777777 34444 44566 77888887774
Q ss_pred cCCccccCCCCCcEEECCCC
Q 039739 568 EVPVQLCKLNQLQLLDLSNN 587 (628)
Q Consensus 568 ~~~~~l~~l~~L~~L~l~~~ 587 (628)
-.-..|.++..|.+|-|++|
T Consensus 479 Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 479 LSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcccccchhhhheeEEecC
Confidence 44556777777777777664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.7e-18 Score=181.24 Aligned_cols=254 Identities=27% Similarity=0.304 Sum_probs=155.6
Q ss_pred ccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEE
Q 039739 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLA 391 (628)
Q Consensus 312 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 391 (628)
.|+.|.+.+|.++ .+|. .+++|+.|++++|.++ .+|.. .++|+.|++++|.+. .++. .+.+|+.|+
T Consensus 223 ~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~ 288 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPA----LPSGLCKLW 288 (788)
T ss_pred CCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhh----chhhcCEEE
Confidence 4555555555554 3442 1355666666666555 23321 345666666666554 4443 134566666
Q ss_pred ccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCC
Q 039739 392 LSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG 471 (628)
Q Consensus 392 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 471 (628)
+++|.++... . ..++|+.|++++|.+.+ +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+..
T Consensus 289 Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 289 IFGNQLTSLP-V---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS 356 (788)
T ss_pred CcCCcccccc-c---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCccCC
Confidence 6666655321 1 23566666666666653 3321 234666666666665 23321 1467777777777663
Q ss_pred CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739 472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG 551 (628)
Q Consensus 472 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 551 (628)
+|.. .++|+.|++++|++.. +|.. +..|+.|++++|++. .+|.. .++|+.|++++|.+++ +|..
T Consensus 357 -LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l--- 420 (788)
T PRK15387 357 -LPTL---PSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML--- 420 (788)
T ss_pred -CCCC---Ccccceehhhcccccc-Cccc--ccccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc---
Confidence 3321 3466677777777763 4432 356777888887775 34432 3578888898888874 4543
Q ss_pred CCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccccccccccccccC
Q 039739 552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNN 608 (628)
Q Consensus 552 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~~~~~ 608 (628)
..+|+.|++++|+++ .+|+.+.++++|+.|++++|++++.+|+.+..++..+.|..
T Consensus 421 ~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s~~~~~g 476 (788)
T PRK15387 421 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSG 476 (788)
T ss_pred hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhcCccccC
Confidence 246778889999888 78888888899999999999999888888876665555544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1.2e-20 Score=174.78 Aligned_cols=291 Identities=19% Similarity=0.216 Sum_probs=198.2
Q ss_pred CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeecc-ccCCCCCCcccccccc
Q 039739 55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFG-SILGTNSSRILDRGLC 133 (628)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~ 133 (628)
.+.-..+.|..|.++ .+|.++|+.+++||.|+|+.| .++...++++.. ++.+..|-+.+ +++++ ++...|.
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N--~Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~----l~k~~F~ 137 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKN--NISFIAPDAFKG-LASLLSLVLYGNNKITD----LPKGAFG 137 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceeccccc--chhhcChHhhhh-hHhhhHHHhhcCCchhh----hhhhHhh
Confidence 356778899888888 466669999999999999999 566667777777 88888888777 77788 8888999
Q ss_pred CCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCccc
Q 039739 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLK 213 (628)
Q Consensus 134 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 213 (628)
++..|+.|.+..|.+.-...+.|..+++|..|.+..|.+. .++...+..+.+++.+.+..|++..... ++.+.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn------L~wla 210 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN------LPWLA 210 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc------cchhh
Confidence 9999999999999998888889999999999999999987 7777788999999999988887543221 11111
Q ss_pred EEeccCCcccccccccccCccCcccceeeeccCCCCCCccccc-ccccCCCccEEEccCCcccCcCchhHHhcCccCcEE
Q 039739 214 SFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPK-FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQL 292 (628)
Q Consensus 214 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 292 (628)
.... .+.+.-.+... . .+..+.+-.+ ...-+. +......+.+=--+.+......|..-++.+++|++|
T Consensus 211 ~~~a-~~~ietsgarc---~-~p~rl~~~Ri------~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 211 DDLA-MNPIETSGARC---V-SPYRLYYKRI------NQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred hHHh-hchhhccccee---c-chHHHHHHHh------cccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 1110 00100000000 0 0001111111 000000 000111111111223334456677767888888888
Q ss_pred EeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcc
Q 039739 293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHL 372 (628)
Q Consensus 293 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 372 (628)
++++|.++..-..+|.....+++|.+.+|.+. .+...++..+..|+.|+|.+|+++...|.+|....+|.+|.+-.|.+
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 88888888777777888888888888888775 55566666677888888888888877777788888888887766654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.9e-17 Score=173.58 Aligned_cols=268 Identities=23% Similarity=0.291 Sum_probs=201.7
Q ss_pred CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739 262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL 341 (628)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 341 (628)
..-..|+++.+.+. .+|..+. ++|+.|.+.+|.++... . ..++|++|++++|.++ .+|. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccC-cccC----ccccccee
Confidence 34567888888777 6776653 47888899888877532 1 3578999999999887 5664 24689999
Q ss_pred EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739 342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421 (628)
Q Consensus 342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 421 (628)
++.+|.+. .+|.. .++|+.|++++|++. .+|. .+++|+.|++++|.+.... . ...+|+.|++++|.+
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccCC-C---CcccccccccccCcc
Confidence 99998877 44432 357889999999887 6664 2578999999999887532 2 234688899999988
Q ss_pred cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 501 (628)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 501 (628)
. .+|.. ..+|++|++++|.+.. +|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|++.. .|..
T Consensus 335 ~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l- 400 (788)
T PRK15387 335 T-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL- 400 (788)
T ss_pred c-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-
Confidence 7 34531 2579999999998873 4432 3578889999999884 4432 3579999999999884 4433
Q ss_pred CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCC
Q 039739 502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL 576 (628)
Q Consensus 502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l 576 (628)
+.+|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+.++
T Consensus 401 -~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 401 -PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 468999999999986 46543 357899999999998 678889999999999999999998877766443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=2e-16 Score=168.38 Aligned_cols=223 Identities=28% Similarity=0.396 Sum_probs=110.6
Q ss_pred cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367 (628)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 367 (628)
+...|.+++..++. .+..+ .+.++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 45566666665553 22222 245667777777666 5555442 46777777766665 344433 235666777
Q ss_pred cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCC
Q 039739 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 447 (628)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 447 (628)
++|.+. .+|..+ ..+|+.|++++|.+.. .+..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.+..
T Consensus 249 s~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc
Confidence 766665 555443 2456666666666553 22222 235666666666555 2333221 345555566555542
Q ss_pred ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739 448 KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN 527 (628)
Q Consensus 448 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 527 (628)
+|..+ .++|+.|++++|.++. +|..+ .++|+.|++++|++. ..|..+ +++|+.|++++|.++ .+|.. +.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt-~LP~~-l~- 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALT-NLPEN-LP- 387 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCC-CCCHh-HH-
Confidence 22222 1455555555555542 33333 245555555555554 222211 234445555554443 23322 11
Q ss_pred CCCccEEECCCcccC
Q 039739 528 SYSLVTLDLSYNRLN 542 (628)
Q Consensus 528 ~~~L~~L~l~~~~~~ 542 (628)
.+|+.|++++|++.
T Consensus 388 -~sL~~LdLs~N~L~ 401 (754)
T PRK15370 388 -AALQIMQASRNNLV 401 (754)
T ss_pred -HHHHHHhhccCCcc
Confidence 23444444444444
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=8.6e-18 Score=166.87 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=31.1
Q ss_pred CCccEEECCCcccCCc----cchhhcCCCCCcEEECCCCcCCcc----CCccccCC-CCCcEEECCCCc
Q 039739 529 YSLVTLDLSYNRLNGN----ISDWVDGLSQLSHLILGHNNLEGE----VPVQLCKL-NQLQLLDLSNNS 588 (628)
Q Consensus 529 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l-~~L~~L~l~~~~ 588 (628)
+.|+.|++++|.++.. +...+..+++|+.+++++|.++.. ....+... +.|+++++.+++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 4566666666665421 223344455666666666666633 22233333 456666665554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=2.8e-17 Score=163.21 Aligned_cols=156 Identities=22% Similarity=0.280 Sum_probs=80.0
Q ss_pred CCCcEEEccCccCcCc----ccccccCCCcccEEEccCCcCCCc----cCccccCCCCcceEECCCCcCCCCC----ccc
Q 039739 409 TNLRWLQLEGNHFVGE----IPQSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQHIMMPKNHLEGPI----PVE 476 (628)
Q Consensus 409 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~ 476 (628)
++|+.|++++|.+++. +...+..+..|++|++++|.+.+. ++..+...++|++|++++|.+.+.. ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4444444444444311 122333344455555555544321 1122333445555555555544222 122
Q ss_pred ccCCCCCCEEEccCCcCcCCCCCCC------CCCcccEEecCCCcCcC----CCCccccccCCCccEEECCCcccCCc--
Q 039739 477 FCQLDWLQILDISDNNISGSLPSCF------HPLSVEQVHLSKNMLHG----QLKRGTFFNSYSLVTLDLSYNRLNGN-- 544 (628)
Q Consensus 477 l~~l~~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~-- 544 (628)
+..+++|++|++++|++.+.....+ ....|+.|++++|.++. .+... +..+++|+.+++++|.++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHH
Confidence 4455566666666665543111111 12566666666666541 11222 45568899999999998855
Q ss_pred --cchhhcCC-CCCcEEECCCCcC
Q 039739 545 --ISDWVDGL-SQLSHLILGHNNL 565 (628)
Q Consensus 545 --~~~~~~~l-~~L~~L~l~~~~i 565 (628)
....+... +.|+.+++.++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCCC
Confidence 33334444 6899999988764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=2.5e-15 Score=160.14 Aligned_cols=244 Identities=25% Similarity=0.339 Sum_probs=98.0
Q ss_pred CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS 393 (628)
Q Consensus 314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 393 (628)
..|+++++.++ .+|..+ .+.++.|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+ .+.|+.|+++
T Consensus 181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls 249 (754)
T PRK15370 181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELS 249 (754)
T ss_pred eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECc
Confidence 34444444443 334322 124445555544444 2332221 34455555544443 343322 2344445555
Q ss_pred CCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCC
Q 039739 394 NNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI 473 (628)
Q Consensus 394 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 473 (628)
+|.+... +..+ ..+|+.|++++|.+. .+|..+. ++|++|++++|.+. .+|..+. ++|+.|++++|.+.. .
T Consensus 250 ~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 4444321 1111 124445555544444 2333221 24455555554444 2222221 244444555544442 2
Q ss_pred cccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCC
Q 039739 474 PVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS 553 (628)
Q Consensus 474 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 553 (628)
|..+ .++|+.|++++|.++. +|..+ +++|+.|++++|++. .+|.. + .++|+.|++++|.++. +|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~-~LP~~-l--p~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT-VLPET-L--PPTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhh-cCcccEEECCCCCCC-cCChh-h--cCCcCEEECCCCcCCC-CCHhHH--H
Confidence 2211 1344455555544442 22211 234455555555443 23322 1 1344555555554442 232222 1
Q ss_pred CCcEEECCCCcCCccCCccccC----CCCCcEEECCCCccc
Q 039739 554 QLSHLILGHNNLEGEVPVQLCK----LNQLQLLDLSNNSLH 590 (628)
Q Consensus 554 ~L~~L~l~~~~i~~~~~~~l~~----l~~L~~L~l~~~~~~ 590 (628)
.|+.|++++|+++ .+|+.+.+ ++++..|++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3444445555444 33332222 244444555555443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-17 Score=136.61 Aligned_cols=165 Identities=27% Similarity=0.400 Sum_probs=112.9
Q ss_pred ccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCC
Q 039739 405 NFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 484 (628)
Q Consensus 405 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 484 (628)
+..+.....|.+++|+++ .+|..+..+.+|+.|++.+|.+. ..|..++.++.|++|++.-|++. ..|.+|..+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345667788888888887 56667788889999999999887 77888899999999999988887 7889999999999
Q ss_pred EEEccCCcCcC-CCCCC-CCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCC
Q 039739 485 ILDISDNNISG-SLPSC-FHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562 (628)
Q Consensus 485 ~L~l~~~~~~~-~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 562 (628)
+||+++|++.+ ..|.. |.+.+|+.|.+++|++ ..+|++ ++.+++|+.|.+..|++. ..|..++.++.|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99999988764 23332 2355555555555555 244444 555555555555555544 3445555555555555555
Q ss_pred CcCCccCCccccCC
Q 039739 563 NNLEGEVPVQLCKL 576 (628)
Q Consensus 563 ~~i~~~~~~~l~~l 576 (628)
|+++ .+|..++++
T Consensus 183 nrl~-vlppel~~l 195 (264)
T KOG0617|consen 183 NRLT-VLPPELANL 195 (264)
T ss_pred ceee-ecChhhhhh
Confidence 5555 455444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.6e-16 Score=125.88 Aligned_cols=153 Identities=24% Similarity=0.353 Sum_probs=67.6
Q ss_pred CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739 31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL 110 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 110 (628)
.+++.|.+|+|.++ ..+..++. +.+|+.|++.+|.+.+... .++.+++|+.|++.-+.+ ...|..++. ++-|
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie~lp~--~issl~klr~lnvgmnrl---~~lprgfgs-~p~l 104 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIEELPT--SISSLPKLRILNVGMNRL---NILPRGFGS-FPAL 104 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhhhcCh--hhhhchhhhheecchhhh---hcCccccCC-Cchh
Confidence 34444444444443 22333444 4444444444444432211 344444444444443311 223344444 4444
Q ss_pred cEEeeccccC-CCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccE
Q 039739 111 KYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 189 (628)
Q Consensus 111 ~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~ 189 (628)
++|++.++.+ .. ..+..|-.+..|+.|++++|+++ .+|..++++++|+.|.+..|.+. ++|. .++.++.|++
T Consensus 105 evldltynnl~e~----~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lre 177 (264)
T KOG0617|consen 105 EVLDLTYNNLNEN----SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLRE 177 (264)
T ss_pred hhhhccccccccc----cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHHH
Confidence 4444444444 11 22234444445555555555544 44555555555555555555444 4444 4555555555
Q ss_pred EEcccCeee
Q 039739 190 LYLSNNHFQ 198 (628)
Q Consensus 190 L~l~~~~~~ 198 (628)
|++.+|++.
T Consensus 178 lhiqgnrl~ 186 (264)
T KOG0617|consen 178 LHIQGNRLT 186 (264)
T ss_pred Hhcccceee
Confidence 555555444
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.1e-13 Score=125.46 Aligned_cols=214 Identities=21% Similarity=0.223 Sum_probs=153.5
Q ss_pred CCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCc-chhHhhccCCCCceEecccccccccccCCCccccC
Q 039739 3 SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHIS-LLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFK 81 (628)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 81 (628)
++++|++..|.++.+.... ..+....|++++.|||+.|-+... ....++..+|+|+.|+++.|.+........-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~-~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAG-IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccc-hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 6788999999998875521 115678899999999999987652 23456666999999999999877554443335688
Q ss_pred ccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccC-chhhhcCC
Q 039739 82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSL-PWCLANMT 160 (628)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~ 160 (628)
+|+.|.+++|++. ......+...+|.|+.|.+.+|..-- +......-++.|+.|+|++|++.+.. ......++
T Consensus 198 ~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCccccccccccccccc
Confidence 9999999999544 33333333349999999999984311 11123445788999999999887432 24566789
Q ss_pred CCCEEEccccccccccCCCCC------CCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccc
Q 039739 161 SLRILDVSSNQLTGSISSSPL------VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINA 224 (628)
Q Consensus 161 ~L~~L~l~~~~~~~~l~~~~l------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (628)
.|+.|+++.+.+. ++..... ...++|++|++..|.+...-....+..+++|+.+.+..+++..
T Consensus 272 ~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 9999999999876 3332223 4578999999999988755555666677788888877776654
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-12 Score=121.57 Aligned_cols=183 Identities=23% Similarity=0.223 Sum_probs=80.6
Q ss_pred CCCccEEEcccccCCC--cccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc-ccccccCCCCC
Q 039739 335 LPSLFSLNISMNALDG--SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH-MFSRNFNLTNL 411 (628)
Q Consensus 335 ~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L 411 (628)
|++++.|+|+.|-+.. .+.....++|+|+.|+++.|++.-.........++.|+.|.+++|.++.. .......+|+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4444444444443331 11222334445555555554433111111111245555555555555421 11223345555
Q ss_pred cEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCCCCc-cc-----ccCCCCCC
Q 039739 412 RWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIP-VE-----FCQLDWLQ 484 (628)
Q Consensus 412 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----l~~l~~L~ 484 (628)
+.|++.+|...........-+..|+.|++++|.+.+. .......++.|+.|.++.|.+...-. .. ...+++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 5555555531111111222344555555555554321 11234445555556555555542211 11 23456666
Q ss_pred EEEccCCcC--cCCCCCCCCCCcccEEecCCCcCc
Q 039739 485 ILDISDNNI--SGSLPSCFHPLSVEQVHLSKNMLH 517 (628)
Q Consensus 485 ~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~ 517 (628)
.|++..|++ +.+........+|+.|.+..|.+.
T Consensus 305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeecccCccccccccchhhccchhhhhhccccccc
Confidence 666666666 323333344555566665555554
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=2e-12 Score=119.09 Aligned_cols=139 Identities=21% Similarity=0.225 Sum_probs=63.5
Q ss_pred ccCCCCccEEECcCCcccCccch---hhhcCCccccEEEccCCccCCccccc-------------ccCCCCCcEEEccCc
Q 039739 356 FGNMKFLQILDLSNNHLTGEIPE---HLVVGCVNLESLALSNNSLEGHMFSR-------------NFNLTNLRWLQLEGN 419 (628)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~-------------~~~~~~L~~L~l~~~ 419 (628)
+..++.|++|+++.|.+....+. .+.+++..|+.|++.+|.+....... ...-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 44455666666666655433332 22334556666666666554322111 122345555555555
Q ss_pred cCcCc----ccccccCCCcccEEEccCCcCCCc----cCccccCCCCcceEECCCCcCCCCCc----ccccCCCCCCEEE
Q 039739 420 HFVGE----IPQSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQHIMMPKNHLEGPIP----VEFCQLDWLQILD 487 (628)
Q Consensus 420 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~ 487 (628)
.+... +...+...+.|+.+.+..|.+... ....+.+|++|+.|+|.+|.++.... ..++.+++|+++.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 44311 123334444555555555544321 12334555555555555555442221 1244455555555
Q ss_pred ccCCcCc
Q 039739 488 ISDNNIS 494 (628)
Q Consensus 488 l~~~~~~ 494 (628)
+++|.+.
T Consensus 248 l~dcll~ 254 (382)
T KOG1909|consen 248 LGDCLLE 254 (382)
T ss_pred ccccccc
Confidence 5555544
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=2.1e-12 Score=118.95 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=21.1
Q ss_pred hhhhcccCCCCcEEecCCCCCCCcchhHhhc
Q 039739 23 ATQELHNFTNLEYLTLDSSSLHISLLQSIAS 53 (628)
Q Consensus 23 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 53 (628)
..+.+.....++.+++|+|.|..+....++.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~ 52 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAK 52 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHH
Confidence 4455666677888888888777666666555
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.4e-11 Score=109.48 Aligned_cols=203 Identities=21% Similarity=0.226 Sum_probs=97.3
Q ss_pred ccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCc-cCcCcccccccCC
Q 039739 354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN-HFVGEIPQSLSKC 432 (628)
Q Consensus 354 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~ 432 (628)
-.+.-+.+|+.+.++.|... .+.+... .-|.|+++.+.+..+.. ...+--+..+.......- -..+.....+...
T Consensus 208 f~l~~f~~l~~~~~s~~~~~-~i~~~~~-~kptl~t~~v~~s~~~~--~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTE-NIVDIEL-LKPTLQTICVHNTTIQD--VPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cchHHhhhhheeeeeccchh-heeceee-cCchhheeeeecccccc--cccccchhhhcCccCCCCCccCCceEEecchH
Confidence 33444567777777776543 3333222 24677777766544322 111111111111111110 0111112222333
Q ss_pred CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739 433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512 (628)
Q Consensus 433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 512 (628)
+.|+++++++|.++ .+.+.+.-.|.++.|+++.|.+... ..+..+++|+.||+++|.++........+-++++|.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 45677777777665 5555666667777777777776533 23666777777777777665322211224445555555
Q ss_pred CCcCcCCCCccccccCCCccEEECCCcccCCcc-chhhcCCCCCcEEECCCCcCC
Q 039739 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNI-SDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~ 566 (628)
+|.+. -..+ ++.+.+|..||+++|+|.... ...++++|.|+.+.|.+|++.
T Consensus 361 ~N~iE--~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIE--TLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHh--hhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55441 1111 444455555555555543211 123444555555555555444
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=7e-12 Score=122.66 Aligned_cols=190 Identities=26% Similarity=0.339 Sum_probs=120.3
Q ss_pred cEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCC
Q 039739 388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN 467 (628)
Q Consensus 388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 467 (628)
...+++.|++. ..+..+..|..|+.+.++.|.+. .+|..+..+..|++++++.|.+. .+|..+..+ -|+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence 44566666654 34455556667777777777666 56777777777777777777776 444444443 3677777777
Q ss_pred cCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch
Q 039739 468 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD 547 (628)
Q Consensus 468 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 547 (628)
+++ .+|..+...+.|..||.+.|++....+....+.+|+.|++.+|++. .+|+. +. .-.|..||+|+|++. .+|-
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~-~LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LC-SLPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-Hh-CCceeeeecccCcee-ecch
Confidence 776 5566666777777777777777644444555667777777777764 34443 33 345667777777776 5666
Q ss_pred hhcCCCCCcEEECCCCcCCccCCccccC---CCCCcEEECCCC
Q 039739 548 WVDGLSQLSHLILGHNNLEGEVPVQLCK---LNQLQLLDLSNN 587 (628)
Q Consensus 548 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~---l~~L~~L~l~~~ 587 (628)
.|..|+.|++|.|.+|+++ +=|..++- ..=.++|+.+-|
T Consensus 229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7777777777777777776 33332221 233466666666
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=7.6e-12 Score=117.96 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=52.6
Q ss_pred CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccc-cccccccCCCccccCccc
Q 039739 7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGC-EVNGLVRGQGFPHFKSLE 84 (628)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~ 84 (628)
|+.|.++++.-.+...+-....+||++++|.+.+| .+++.....+++.|++|++|++..| .++......-...|++|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 45555555544444444444555555555555555 4455555555555555555555554 233222111223455555
Q ss_pred eeecccchhhcCcchhhhhhccCCCccEEeeccc
Q 039739 85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGS 118 (628)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 118 (628)
+|++++|. .+.+...+.+.++++.++.+.+.||
T Consensus 220 ~lNlSwc~-qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 220 YLNLSWCP-QISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HhhhccCc-hhhcCcchHHhccchhhhhhhhccc
Confidence 55555553 3333333334444444444444443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=8.7e-11 Score=105.93 Aligned_cols=141 Identities=20% Similarity=0.149 Sum_probs=112.6
Q ss_pred cccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCc
Q 039739 452 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSL 531 (628)
Q Consensus 452 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 531 (628)
.+.-...|+++++++|.++ .+..+..-.|+++.|+++.|.+.. ......+++|..|++++|.++ .+..+ -..+-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH-hhhhh-HhhhcCE
Confidence 3444578999999999998 556678889999999999999984 444556899999999999985 33322 4456789
Q ss_pred cEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccC-CccccCCCCCcEEECCCCcccccccccccc
Q 039739 532 VTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599 (628)
Q Consensus 532 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~ 599 (628)
+.|.+++|.+. ....++.+-+|.+||+++|+|.... -..++++|-|+.+.+.+|++. .+|+--.+
T Consensus 355 KtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vdYRTK 420 (490)
T KOG1259|consen 355 KTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVDYRTK 420 (490)
T ss_pred eeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccchHHHH
Confidence 99999999885 3566888889999999999997433 346889999999999999999 57765544
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.8e-10 Score=98.76 Aligned_cols=125 Identities=25% Similarity=0.266 Sum_probs=40.1
Q ss_pred CCCcceEECCCCcCCCCCccccc-CCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEE
Q 039739 456 LTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534 (628)
Q Consensus 456 ~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 534 (628)
+..+++|++.+|.+... ..+. .+.+|+.|++++|.+. .......++.|+.|++++|.++ .+.......+|+|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 34455555555555422 1232 3455555555555555 2333333455555555555553 3333212356778888
Q ss_pred ECCCcccCCc-cchhhcCCCCCcEEECCCCcCCccCCc----cccCCCCCcEEECC
Q 039739 535 DLSYNRLNGN-ISDWVDGLSQLSHLILGHNNLEGEVPV----QLCKLNQLQLLDLS 585 (628)
Q Consensus 535 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~l~ 585 (628)
++++|++... ....+..+++|+.|++.+|+++. .+. .+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence 8887777642 12456677888888888888773 232 35667777777643
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=3.5e-11 Score=113.58 Aligned_cols=267 Identities=20% Similarity=0.124 Sum_probs=167.5
Q ss_pred CCCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEeccccc-ccccccCCCccc
Q 039739 2 GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGCE-VNGLVRGQGFPH 79 (628)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 79 (628)
.+++++++|++.++........-..-..|++|++|++..| .+++.....+++.|++|++|++++|. +.+..-...+++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 4689999999999964332344444455899999999996 78888788888889999999999995 444222224577
Q ss_pred cCccceeecccchhhcCcchhhhhhccCCCccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCcccc-cCchhh-
Q 039739 80 FKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCL- 156 (628)
Q Consensus 80 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l- 156 (628)
++.++.+.+.||. .........+..++..+..+++..|.. ++.++. ..-..+..|++|..+++...+ .....+
T Consensus 241 ~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 241 CKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW---LIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred chhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhccccchHHH---HHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 8889998888884 344444455555578888888888855 442211 123568899999998875432 222223
Q ss_pred hcCCCCCEEEccccccccccCCCCC-CCCCcccEEEcccCeeeeecCC-CCcCCCCcccEEeccCCcccccc-ccccc-C
Q 039739 157 ANMTSLRILDVSSNQLTGSISSSPL-VHLTSIEELYLSNNHFQIPISL-EPFFNHSRLKSFYADNNEINAEI-TQSHS-L 232 (628)
Q Consensus 157 ~~l~~L~~L~l~~~~~~~~l~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~-~ 232 (628)
.++.+|+.+-+++|+--+......+ .+++.|+.+++..+........ ..-.+++.|+++.++.|....+. ..... .
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 4678999999999873222222122 3678999999998876533322 22357889999999887643221 11000 0
Q ss_pred ccCcccceeeeccCCCCCCcccccccccCCCccEEEccCC
Q 039739 233 TAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHI 272 (628)
Q Consensus 233 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (628)
......++.+.+.............+..|++|+.+++-++
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 1222244455553333333344444455555555555444
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.3e-09 Score=111.44 Aligned_cols=178 Identities=34% Similarity=0.474 Sum_probs=94.3
Q ss_pred CCCcEEEccCccCcCcccccccCCC-cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEE
Q 039739 409 TNLRWLQLEGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 487 (628)
Q Consensus 409 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 487 (628)
+.++.|++.++.++ .++....... +|+.|++++|.+. ..+..+..++.|+.|++++|.+. ..+......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 44445555544444 2222233332 4555555555544 22234455555555555555555 2222333555555666
Q ss_pred ccCCcCcCCCCCCC-CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 488 ISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 488 l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
+++|++. ..|... .+..|+++.+++|+.. ..+.. +..+..+..|.+.+|++.. .+..++.+++++.|++++|.++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence 6666555 233222 2344666666666432 22222 5556666666666666652 2556667777777777777777
Q ss_pred ccCCccccCCCCCcEEECCCCcccccccc
Q 039739 567 GEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595 (628)
Q Consensus 567 ~~~~~~l~~l~~L~~L~l~~~~~~~~ip~ 595 (628)
.++. +..+.+|+.|+++++.++..+|.
T Consensus 269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 -SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -cccc-ccccCccCEEeccCccccccchh
Confidence 3333 66777777777777777644333
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=4.4e-09 Score=91.31 Aligned_cols=129 Identities=24% Similarity=0.363 Sum_probs=51.2
Q ss_pred CCCCCCEEeCCCCCCCCccchhhhcc-cCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCc-ccc
Q 039739 3 SFPSLNTLYLSSNNFTDIATATQELH-NFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGF-PHF 80 (628)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l 80 (628)
+...+++|+|+++.|+.+.. ++ .+.+|+.|++++|.++. ...+.. +++|+.|++++|.+..... .+ ..+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~--l~~l~~-L~~L~~L~L~~N~I~~i~~--~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITK--LEGLPG-LPRLKTLDLSNNRISSISE--GLDKNL 87 (175)
T ss_dssp -------------------S------TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CH--HHHHH-
T ss_pred cccccccccccccccccccc----hhhhhcCCCEEECCCCCCcc--ccCccC-hhhhhhcccCCCCCCcccc--chHHhC
Confidence 45568999999999987543 44 46789999999999874 345666 8999999999999885422 34 468
Q ss_pred CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCC-CCCCccccccccCCCCCcEEEcc
Q 039739 81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG-TNSSRILDRGLCSLVHLQVLNIA 144 (628)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~l~~L~~L~L~ 144 (628)
++|++|++++|.+...+. ...+.. +++|++|++.+|.+. ...-. ...+..+|+|+.||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~-l~~L~~-l~~L~~L~L~~NPv~~~~~YR--~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNE-LEPLSS-LPKLRVLSLEGNPVCEKKNYR--LFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCC-CGGGGG--TT--EEE-TT-GGGGSTTHH--HHHHHH-TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHH-hHHHHc-CCCcceeeccCCcccchhhHH--HHHHHHcChhheeCCE
Confidence 999999999996543333 355666 999999999999883 32111 2357789999999754
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-10 Score=104.34 Aligned_cols=184 Identities=21% Similarity=0.193 Sum_probs=91.8
Q ss_pred CCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCcc
Q 039739 32 NLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLK 111 (628)
Q Consensus 32 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 111 (628)
.|++||||...++......+-..|.+|+.|.+.+..+.+.+-. .+.+-.+|+.|+++.|. .+.......+..+|+.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccc-ccchhHHHHHHHhhhhHh
Confidence 3666666666665544444333366666666666655544332 45555666666666653 333333344444466666
Q ss_pred EEeeccccCCCCCCccccccccCCCCCcEEEccCCccc---ccCchhhhcCCCCCEEEcccccc-ccccCCCCCCCCCcc
Q 039739 112 YLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR---GSLPWCLANMTSLRILDVSSNQL-TGSISSSPLVHLTSI 187 (628)
Q Consensus 112 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~-~~~l~~~~l~~l~~L 187 (628)
.|+++.|......+.+....+ -++|+.|+++++.-. ..+..-...+++|.+||++.|.. +..... .+-+++.|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L 340 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYL 340 (419)
T ss_pred hcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchh
Confidence 666666655222221111111 245666666665321 11112234566666666666542 211111 34556666
Q ss_pred cEEEcccCeeeeecCCCCcCCCCcccEEeccCC
Q 039739 188 EELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220 (628)
Q Consensus 188 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 220 (628)
++|.++.|..-.....-.+...+.|.+|++.++
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 667666664322222223455566666666554
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.3e-09 Score=75.45 Aligned_cols=61 Identities=41% Similarity=0.486 Sum_probs=46.1
Q ss_pred CCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739 529 YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589 (628)
Q Consensus 529 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 589 (628)
|+|+.|++++|++....+..|..+++|+.|++++|.++...++.|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888877766666777788888888888887766667778888888888887764
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=8.5e-09 Score=110.18 Aligned_cols=93 Identities=29% Similarity=0.488 Sum_probs=54.1
Q ss_pred ccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECC
Q 039739 506 VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 585 (628)
Q Consensus 506 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 585 (628)
+..|+|++|.+.+.++.. +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 445555555555555554 5555566666666666555555555666666666666666655556656666666666666
Q ss_pred CCcccccccccccc
Q 039739 586 NNSLHGSIPLCLDN 599 (628)
Q Consensus 586 ~~~~~~~ip~~~~~ 599 (628)
+|++++.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 66666666655543
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=1.8e-08 Score=102.92 Aligned_cols=174 Identities=36% Similarity=0.493 Sum_probs=68.1
Q ss_pred CccCEEEccCCcCCcccchhhhhhCC-CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739 311 KRLGMLDISNNNFRGHIPVEIGDVLP-SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES 389 (628)
Q Consensus 311 ~~L~~L~l~~~~i~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 389 (628)
+.++.+++.++.++ .++..... .. +|+.|++++|.+. .+|..+..+++|+.|+++.|++. .++.... ..+.|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 34444444444444 33333322 21 4444444444444 22233444444444444444444 3332111 2344444
Q ss_pred EEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcC
Q 039739 390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469 (628)
Q Consensus 390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 469 (628)
|++++|.+.... ........|+++.+++|... ..+..+..+..+..+.+.++.+. ..+..+..+++++.|++++|.+
T Consensus 191 L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence 444444443211 11112223444444444322 22233333444444444443332 1123334444444444444444
Q ss_pred CCCCcccccCCCCCCEEEccCCcCc
Q 039739 470 EGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 470 ~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
..... +..+.+++.|+++++.+.
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccc--ccccCccCEEeccCcccc
Confidence 32221 444444444444444443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=2.8e-08 Score=106.28 Aligned_cols=109 Identities=30% Similarity=0.432 Sum_probs=64.6
Q ss_pred cceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCC
Q 039739 459 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY 538 (628)
Q Consensus 459 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 538 (628)
++.|++++|.+.+..|..+..+++|+.|++++|.+. +.+|.. +..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-----------------------g~iP~~-~~~l~~L~~LdLs~ 475 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-----------------------GNIPPS-LGSITSLEVLDLSY 475 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-----------------------CcCChH-HhCCCCCCEEECCC
Confidence 455555555555555555555555555555555554 444444 55566666666666
Q ss_pred cccCCccchhhcCCCCCcEEECCCCcCCccCCccccCC-CCCcEEECCCCcccc
Q 039739 539 NRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNSLHG 591 (628)
Q Consensus 539 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l-~~L~~L~l~~~~~~~ 591 (628)
|++++.+|+.++.+++|+.|+|++|++++.+|..+... .++..+++.+|+...
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 66666666666666666666666666666666665543 345566666665443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=9.3e-10 Score=108.13 Aligned_cols=193 Identities=27% Similarity=0.368 Sum_probs=139.9
Q ss_pred CCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES 389 (628)
Q Consensus 310 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 389 (628)
+..-...+++.|.+. ++|..++. |..|+.+.+..|.+. .+|..+.++..|+.++++.|++. ..|..++ .--|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence 344556777778776 77877766 667888888887777 66777888888888888888887 7776665 345788
Q ss_pred EEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcC
Q 039739 390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469 (628)
Q Consensus 390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 469 (628)
|.+++|+++. .+..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.++.|.+. .+|+.+. .-.|..|+++.|++
T Consensus 148 li~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI 223 (722)
T ss_pred EEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce
Confidence 8888887763 5566667778888888888876 56777788888888888888776 5555555 45677888888888
Q ss_pred CCCCcccccCCCCCCEEEccCCcCcCCCCCCCC----CCcccEEecCCC
Q 039739 470 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFH----PLSVEQVHLSKN 514 (628)
Q Consensus 470 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~L~~L~l~~n 514 (628)
. .+|..|..++.|++|-+.+|++. +.|-.+. ..-.|+|+..-|
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7 77888888888888888888887 3333221 233455555555
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=2.7e-08 Score=108.68 Aligned_cols=303 Identities=24% Similarity=0.239 Sum_probs=179.7
Q ss_pred ccCcEEEeecCCCCCCCCcccccCCccCEEEccCCc--CCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccE
Q 039739 287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN--FRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364 (628)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 364 (628)
...+.+.+.++.+.... .-..+++|++|-+.++. +. .++..++..+|.|+.|++++|.-.+.+|..++.+-+|+.
T Consensus 523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 45556666555443211 12245678888888875 44 677777777899999999988777788999999999999
Q ss_pred EECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC--cCcccccccCCCcccEEEccC
Q 039739 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF--VGEIPQSLSKCFVLEGLFLNN 442 (628)
Q Consensus 365 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~ 442 (628)
|+++++.+. .+|..+. .+..|.+|++..+......+.....+++|++|.+..... +......+..+.+|+.+.+..
T Consensus 600 L~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999887 7887654 478888998887765444455555688999998876542 112233445555666665544
Q ss_pred CcCCCccCccccCCCCcc----eEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-------CCcccEEec
Q 039739 443 NSLSGKIPRWLGNLTRLQ----HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-------PLSVEQVHL 511 (628)
Q Consensus 443 ~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~L~~L~l 511 (628)
... .....+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++...+....... .+++..+.+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 332 1112233344443 2332333322 4445577888899999988887644332211 223444444
Q ss_pred CCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCcc-CCccccC----------CCCCc
Q 039739 512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGE-VPVQLCK----------LNQLQ 580 (628)
Q Consensus 512 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~----------l~~L~ 580 (628)
.++...... .+ ....++|+.|.+..|.....+......+..+..+.+..+...+. ....... .+.|+
T Consensus 755 ~~~~~~r~l-~~-~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~ 832 (889)
T KOG4658|consen 755 LNCHMLRDL-TW-LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLE 832 (889)
T ss_pred hcccccccc-ch-hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchh
Confidence 444432111 11 33467888888888865444333333444444333333333211 0001111 12377
Q ss_pred EEECCCCcccccccccccc
Q 039739 581 LLDLSNNSLHGSIPLCLDN 599 (628)
Q Consensus 581 ~L~l~~~~~~~~ip~~~~~ 599 (628)
.+.+..|+-.+++|...+.
T Consensus 833 ~~~ve~~p~l~~~P~~~~~ 851 (889)
T KOG4658|consen 833 ELIVEECPKLGKLPLLSTL 851 (889)
T ss_pred heehhcCcccccCcccccc
Confidence 7888888888888877655
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.5e-09 Score=96.67 Aligned_cols=183 Identities=17% Similarity=0.134 Sum_probs=135.6
Q ss_pred CCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEeccccc-ccccccCCCccccCccc
Q 039739 6 SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCE-VNGLVRGQGFPHFKSLE 84 (628)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~ 84 (628)
.|++|||++..++. ..+--.++.|.+|+.|.+.++.+++.....+++ -.+|+.|+++.|. ++.....-.+.+|+.|.
T Consensus 186 Rlq~lDLS~s~it~-stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeH-HHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence 48899999988854 345567888999999999999999999999999 9999999999985 44433333568899999
Q ss_pred eeecccchhhcCcchhhhhhccCCCccEEeeccccC--CCCCCccccccccCCCCCcEEEccCCcc-cccCchhhhcCCC
Q 039739 85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL--GTNSSRILDRGLCSLVHLQVLNIAYNDL-RGSLPWCLANMTS 161 (628)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~l~~l~~ 161 (628)
.|++++|... .......+.+--++|..|+++|+.- ..+. +. --..++++|..|||++|.. .......|.+++.
T Consensus 264 ~LNlsWc~l~-~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh--~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 264 ELNLSWCFLF-TEKVTVAVAHISETLTQLNLSGYRRNLQKSH--LS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hcCchHhhcc-chhhhHHHhhhchhhhhhhhhhhHhhhhhhH--HH-HHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 9999999422 2223334444456899999999865 3321 21 1346899999999998854 3334456678899
Q ss_pred CCEEEccccccccccCCC--CCCCCCcccEEEcccCe
Q 039739 162 LRILDVSSNQLTGSISSS--PLVHLTSIEELYLSNNH 196 (628)
Q Consensus 162 L~~L~l~~~~~~~~l~~~--~l~~l~~L~~L~l~~~~ 196 (628)
|++|.++.|.-. +|.. .+...|+|.+|++.++-
T Consensus 340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred heeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 999999998632 2221 35678999999998874
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3e-08 Score=108.31 Aligned_cols=63 Identities=33% Similarity=0.484 Sum_probs=30.6
Q ss_pred cccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCc
Q 039739 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371 (628)
Q Consensus 307 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (628)
|..+|.|+.|++++|.-.+.+|..+.. +-+|+.|+++++.+. .+|.++..+..|.+|++..+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence 444455555555544333345544444 445555555555444 445555555555555554443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=3.6e-08 Score=70.02 Aligned_cols=59 Identities=31% Similarity=0.451 Sum_probs=31.2
Q ss_pred CccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccc
Q 039739 109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQ 171 (628)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 171 (628)
+|++|++++|.+.. ++.+.|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTE----IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESE----ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCc----cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555544 444455555555555555555554444455555555555555554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=7.5e-09 Score=93.63 Aligned_cols=212 Identities=15% Similarity=0.109 Sum_probs=133.4
Q ss_pred CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCC-cchhHhhccCCCCceEecccccccccccCCCc-cccCccc
Q 039739 7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHI-SLLQSIASIFPSLKNLSMIGCEVNGLVRGQGF-PHFKSLE 84 (628)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~ 84 (628)
++.|-+.++.|-.+...-..=+.+.++++++|.+|.|++ +...++...+|.|+.|+++.|.+...+.. + ...++|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceE
Confidence 345555566553332222223346788889998888875 22334444488899999988887765443 3 3567888
Q ss_pred eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCC-CCCcEEEccCCcccc--cCchhhhcCCC
Q 039739 85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSL-VHLQVLNIAYNDLRG--SLPWCLANMTS 161 (628)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~--~~~~~l~~l~~ 161 (628)
+|-|.|.+ ..-.....+...+|.++.|.++.|....-. +........ +.+++|.+..|...- ..-.--..+++
T Consensus 125 ~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~N~~rq~n--~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 125 VLVLNGTG--LSWTQSTSSLDDLPKVTELHMSDNSLRQLN--LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EEEEcCCC--CChhhhhhhhhcchhhhhhhhccchhhhhc--cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 88888884 333344444444888888888887542200 111122222 356666666654321 00011123577
Q ss_pred CCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccc
Q 039739 162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINA 224 (628)
Q Consensus 162 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (628)
+..+-+..|.+...-........+.+-.|+++.+.+......+.+.+++.|..+.+.++++.+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 888888888776444444567778888899999988877777888999999999998887654
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=9.9e-09 Score=104.89 Aligned_cols=222 Identities=27% Similarity=0.282 Sum_probs=101.0
Q ss_pred ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739 356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435 (628)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 435 (628)
+..+++|+.+++.+|.+. .+... ...+++|++|++++|.++. ...+..++.|+.|++.+|.+... ..+..++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc--ccchhhccchhhheeccCcchhc--cCCccchhh
Confidence 334444555555555443 22221 1124555555555555443 22333344455555555554421 223334555
Q ss_pred cEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCC--cccEEecC
Q 039739 436 EGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--SVEQVHLS 512 (628)
Q Consensus 436 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~ 512 (628)
+.+++++|.+....+ . ...+.+++.+++.+|.+... ..+..+..+..+++.+|.++. ........ .|+.+.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLS 240 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcc
Confidence 555555555542222 1 34455555566665555422 223333344444555555442 22122122 25566666
Q ss_pred CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc---cCCcc-ccCCCCCcEEECCCCc
Q 039739 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG---EVPVQ-LCKLNQLQLLDLSNNS 588 (628)
Q Consensus 513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~---~~~~~-l~~l~~L~~L~l~~~~ 588 (628)
+|++. .++.. +..+..+..|++..+++.. .+.+...+.+..+....+.+.. ..... ....+++..+.+.+++
T Consensus 241 ~n~i~-~~~~~-~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 241 GNRIS-RSPEG-LENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred cCccc-ccccc-ccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 66553 22122 4455666666666666542 2234444555555555555431 11111 3445566666666666
Q ss_pred ccc
Q 039739 589 LHG 591 (628)
Q Consensus 589 ~~~ 591 (628)
+..
T Consensus 317 ~~~ 319 (414)
T KOG0531|consen 317 IRK 319 (414)
T ss_pred ccc
Confidence 654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.2e-08 Score=104.31 Aligned_cols=195 Identities=26% Similarity=0.304 Sum_probs=87.4
Q ss_pred CccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEE
Q 039739 286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQIL 365 (628)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 365 (628)
+..++.+.+..+.+.. ....+..+.+++.+++.+|.+. .+...+ ..+++|+.|++++|.|+.. ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheeccccccccc--cchhhccchhhh
Confidence 3444444454444433 1122445555666666665554 222111 1245555566655555532 123444445555
Q ss_pred ECcCCcccCccchhhhcCCccccEEEccCCccCCccc-ccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc
Q 039739 366 DLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF-SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 444 (628)
Q Consensus 366 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 444 (628)
++.+|.+. .+.. +..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+... ..+..+..+..+++..+.
T Consensus 146 ~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 55555554 3333 2225555555555555543222 1 23455555555555554321 122223333333444444
Q ss_pred CCCccCccccCCCC--cceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 445 LSGKIPRWLGNLTR--LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 445 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
+... ..+..+.. |+.+++.++++. ..+..+..++.+..+++.++++.
T Consensus 220 i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 220 ISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 4311 11122222 555666665554 22234445555555555555444
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.6e-07 Score=85.18 Aligned_cols=228 Identities=20% Similarity=0.137 Sum_probs=119.9
Q ss_pred CccEEECcCCcccCccch-hhhcCCccccEEEccCCccCCc--ccccccCCCCCcEEEccCccCcCcccccccCCCcccE
Q 039739 361 FLQILDLSNNHLTGEIPE-HLVVGCVNLESLALSNNSLEGH--MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEG 437 (628)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 437 (628)
.++.+.+.++.+...... .+.+.+..++.+++.+|.+++. ....+.++|.|++|+++.|++...+..--....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344555555554422221 1223456666777777766542 2334456777777777776665322211134556777
Q ss_pred EEccCCcCCC-ccCccccCCCCcceEECCCCcCCCCC--cccccCC-CCCCEEEccCCcCcCCCCC---CCCCCcccEEe
Q 039739 438 LFLNNNSLSG-KIPRWLGNLTRLQHIMMPKNHLEGPI--PVEFCQL-DWLQILDISDNNISGSLPS---CFHPLSVEQVH 510 (628)
Q Consensus 438 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l-~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~ 510 (628)
|.+++..+.- .....+..+|.+++|.|+.|...... ....... +.++.|....|...-+... .-.++++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 7776665431 12334455666666666666332111 1111111 2334444444422111000 01156666777
Q ss_pred cCCCcCcCCCCccccccCCCccEEECCCcccCCcc-chhhcCCCCCcEEECCCCcCCccCCc------cccCCCCCcEEE
Q 039739 511 LSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNI-SDWVDGLSQLSHLILGHNNLEGEVPV------QLCKLNQLQLLD 583 (628)
Q Consensus 511 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~------~l~~l~~L~~L~ 583 (628)
+..|++........+...|++.-|+|+.+++.+.. .+.+..++.|..|.+.++++...+.. .++.+++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 77776643333333555677778888888876432 25677788888888888888754432 255667777665
Q ss_pred CCCCccc
Q 039739 584 LSNNSLH 590 (628)
Q Consensus 584 l~~~~~~ 590 (628)
=+ +|+
T Consensus 286 Gs--kIs 290 (418)
T KOG2982|consen 286 GS--KIS 290 (418)
T ss_pred Cc--ccc
Confidence 43 554
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.36 E-value=1.6e-07 Score=100.03 Aligned_cols=108 Identities=18% Similarity=0.317 Sum_probs=58.2
Q ss_pred CCCEEeCCCCCCCCccchhhhccc-CCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739 6 SLNTLYLSSNNFTDIATATQELHN-FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE 84 (628)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 84 (628)
+|++|++++..... ..++..++. +|.|++|.+.+-.+.......++..+|+|+.||++++.+... .+++++++|+
T Consensus 123 nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 123 NLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred hhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46666666654321 133333333 566666666665554444445555566666666666665543 2566666666
Q ss_pred eeecccchhhcCc-chhhhhhccCCCccEEeeccccC
Q 039739 85 HLDMEGALIALNT-SFLQIIGESMPSLKYLSLFGSIL 120 (628)
Q Consensus 85 ~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 120 (628)
+|.+.+- .+.. .....+.+ +++|++||+|....
T Consensus 199 ~L~mrnL--e~e~~~~l~~LF~-L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 199 VLSMRNL--EFESYQDLIDLFN-LKKLRVLDISRDKN 232 (699)
T ss_pred HHhccCC--CCCchhhHHHHhc-ccCCCeeecccccc
Confidence 6666554 2222 33344455 66666666665544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=5.5e-08 Score=86.97 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=21.6
Q ss_pred hhhhcccCCCCcEEecCCCCCCCcchhHhhc
Q 039739 23 ATQELHNFTNLEYLTLDSSSLHISLLQSIAS 53 (628)
Q Consensus 23 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 53 (628)
..+.+..+..+..++||+|.|..+....+++
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~ 52 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCN 52 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHH
Confidence 3444555677788888888887776777766
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.34 E-value=1.2e-07 Score=101.10 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=107.2
Q ss_pred CCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCC------------c--cccCccceeecccchhhc
Q 039739 30 FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQG------------F--PHFKSLEHLDMEGALIAL 95 (628)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------------~--~~l~~L~~L~l~~~~~~~ 95 (628)
--+++..++.+..........+.. ..|+.+.+.+........... + ..-.+|++|+++|.. .+
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~-~~ 135 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE-LF 135 (699)
T ss_pred hheeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc-hh
Confidence 345666666666555444444443 337777776654332211100 0 112456666666654 34
Q ss_pred CcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccc
Q 039739 96 NTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGS 175 (628)
Q Consensus 96 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 175 (628)
...++..++.-+|.|++|.+++-.+... -......++++|+.||+|++++... ..
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~G-------------------- 190 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SG-------------------- 190 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HH--------------------
Confidence 5555666666566666666665444110 1111233455555555555544422 33
Q ss_pred cCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccc
Q 039739 176 ISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFP 255 (628)
Q Consensus 176 l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 255 (628)
+.++++|+.|.+.+-.+........+.++++|++||++........ .+- ....
T Consensus 191 -----IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii-----------~qYl 243 (699)
T KOG3665|consen 191 -----ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KII-----------EQYL 243 (699)
T ss_pred -----HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHH-----------HHHH
Confidence 4444555555444444332222233445555555555543321100 000 0111
Q ss_pred cccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeec
Q 039739 256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296 (628)
Q Consensus 256 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (628)
+.-..+|+|+.||.+++.+.+...+.+....++|+.+..-+
T Consensus 244 ec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 244 ECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred HhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 22234678999999999888777777777778887776544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=1.2e-07 Score=84.87 Aligned_cols=97 Identities=22% Similarity=0.246 Sum_probs=46.4
Q ss_pred hhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccc---cc-------CchhhhcCCCCCEEEcccc
Q 039739 101 QIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR---GS-------LPWCLANMTSLRILDVSSN 170 (628)
Q Consensus 101 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~-------~~~~l~~l~~L~~L~l~~~ 170 (628)
..+.. +..+..+++|||.++.+..+.....+.+-.+|+..++++-... +. +...+..|++|+.++++.|
T Consensus 24 eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 33444 5556666666666544333333334455555666655543211 11 1223445566666666666
Q ss_pred ccccccCCC---CCCCCCcccEEEcccCeee
Q 039739 171 QLTGSISSS---PLVHLTSIEELYLSNNHFQ 198 (628)
Q Consensus 171 ~~~~~l~~~---~l~~l~~L~~L~l~~~~~~ 198 (628)
.+....|.. .+.+-+.|++|.+++|.+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 554333220 1344455666666666543
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=2.7e-08 Score=100.76 Aligned_cols=126 Identities=26% Similarity=0.390 Sum_probs=79.9
Q ss_pred ccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCch-hhhcCC
Q 039739 82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMT 160 (628)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~l~~l~ 160 (628)
.|.+.++++|.+...+... .- ++.++.|+|++|++.+ . +.+..|++|++|||++|.+.. +|. ....|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SL---ql-l~ale~LnLshNk~~~----v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESL---QL-LPALESLNLSHNKFTK----V--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK 233 (1096)
T ss_pred hHhhhhcchhhHHhHHHHH---HH-HHHhhhhccchhhhhh----h--HHHHhcccccccccccchhcc-ccccchhhhh
Confidence 4555566665432222222 22 5677778888777733 2 367777888888888877763 232 223333
Q ss_pred CCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcc
Q 039739 161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222 (628)
Q Consensus 161 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (628)
|+.|.+++|.++ ++-. +.++.+|+.||+++|-+.+.-....+..+..|+.|++.+|.+
T Consensus 234 -L~~L~lrnN~l~-tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 -LQLLNLRNNALT-TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -heeeeecccHHH-hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 777788877776 4443 777788888888887776655555666777777778877754
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=4.9e-08 Score=98.97 Aligned_cols=86 Identities=26% Similarity=0.259 Sum_probs=48.8
Q ss_pred ccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCC
Q 039739 130 RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNH 209 (628)
Q Consensus 130 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 209 (628)
.++.-++.|+.|+|+.|++... +.+..|++|++||++.|.+. .+|......|. |..|.+++|.+.. .-.+.++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L~gie~L 253 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---LRGIENL 253 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---hhhHHhh
Confidence 3555566666666666666533 25666666666666666665 55553334443 6666666665542 1234455
Q ss_pred CcccEEeccCCcc
Q 039739 210 SRLKSFYADNNEI 222 (628)
Q Consensus 210 ~~L~~L~l~~~~~ 222 (628)
.+|+.|++++|-+
T Consensus 254 ksL~~LDlsyNll 266 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLL 266 (1096)
T ss_pred hhhhccchhHhhh
Confidence 5556666655543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=2.8e-06 Score=54.94 Aligned_cols=40 Identities=35% Similarity=0.596 Sum_probs=22.8
Q ss_pred CCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739 553 SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 553 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip 594 (628)
++|++|++++|+|+ .+|..+.+|++|+.|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 35666666666666 45555666666666666666665 343
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=3.1e-05 Score=76.08 Aligned_cols=169 Identities=17% Similarity=0.202 Sum_probs=107.1
Q ss_pred ccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccE
Q 039739 429 LSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQ 508 (628)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 508 (628)
+..|..+++|++++|.+. .+| . -.++|++|.+++|......|..+ .++|+.|++++|...... +.+|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccce
Confidence 455789999999999776 445 2 23579999999977655666544 468999999998432222 567888
Q ss_pred EecCCCcCcCCCCccccccCCCccEEECCCcccC--CccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739 509 VHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN--GNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 586 (628)
Q Consensus 509 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 586 (628)
|.+..+... .++. -.++|+.|.+.+++.. ...+..+. ++|+.|++++|... ..|+.+. .+|+.|++..
T Consensus 117 L~L~~n~~~-~L~~----LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATD-SIKN----VPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCc-cccc----CcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 888766542 2221 1246888888654321 11121111 57999999999876 5566554 5889999887
Q ss_pred Cc------cccccccccccccccccccCCcccccccEEEEEee
Q 039739 587 NS------LHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIE 623 (628)
Q Consensus 587 ~~------~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (628)
+. ....+|+.+ .+. ..+...++++.+.+-++.
T Consensus 187 n~~~sLeI~~~sLP~nl-~L~----f~n~lkL~~~~f~d~~i~ 224 (426)
T PRK15386 187 EQKTTWNISFEGFPDGL-DID----LQNSVLLSPDVFKDKNIT 224 (426)
T ss_pred cccccccCccccccccc-Eec----hhhhcccCHHHhhccccc
Confidence 63 223667666 322 222345666666665544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=6.4e-05 Score=73.90 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=78.9
Q ss_pred CCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceE
Q 039739 383 GCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462 (628)
Q Consensus 383 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 462 (628)
.+.+++.|++++|.++... . -.++|++|.+++|.....+|..+ .++|++|++++|.....+| .+|+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-V---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-C---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceE
Confidence 3688888999888766432 1 12468888888876555566544 3578888888874322333 456777
Q ss_pred ECCCCcCCCCCcccccCC-CCCCEEEccCCcCc-CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCc
Q 039739 463 MMPKNHLEGPIPVEFCQL-DWLQILDISDNNIS-GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539 (628)
Q Consensus 463 ~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 539 (628)
++.++.... +..+ ++|+.|.+.+++.. ........|++|+.|.+.+|... .+|.. + ..+|+.|.++.+
T Consensus 118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~-L--P~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK-L--PESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccc-c--cccCcEEEeccc
Confidence 776554321 1122 35667776543211 11111123577888888777754 23322 2 257777777665
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=7.4e-07 Score=71.34 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=28.7
Q ss_pred CCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739 529 YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 529 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
+.++.|++++|.+. .+|+.+..++.|+.|+++.|++. ..|..+..+.+|..|+..++.+.
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34444444444444 33444555555555555555554 34444444555555555544444
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.6e-05 Score=50.40 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=29.6
Q ss_pred CCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 529 YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 529 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
++|++|++++|+++. +|..++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 478899999999984 5556889999999999999988
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=5.7e-05 Score=65.21 Aligned_cols=107 Identities=25% Similarity=0.250 Sum_probs=65.3
Q ss_pred hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc-ccccccCCCCCc
Q 039739 334 VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH-MFSRNFNLTNLR 412 (628)
Q Consensus 334 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~ 412 (628)
+......+++++|.+.. + ..|..++.|..|.++.|+|+ .+...+..-+++|..|.+.+|++... ....++.||.|+
T Consensus 40 ~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 34556667777776552 1 23566677777777777776 55555555567777777777766432 133445677777
Q ss_pred EEEccCccCcCcc---cccccCCCcccEEEccCC
Q 039739 413 WLQLEGNHFVGEI---PQSLSKCFVLEGLFLNNN 443 (628)
Q Consensus 413 ~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~ 443 (628)
+|.+-+|++...- ...+..+++|+.||+.+-
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777777765321 134455666666666543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=5.4e-05 Score=65.32 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=61.4
Q ss_pred CCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCcc
Q 039739 32 NLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLK 111 (628)
Q Consensus 32 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 111 (628)
+...++|++|.+.. ...+.. +++|..|.+.+|+++...|. --.-+++|+.|.|.+|.+.--+++ .-++. ||.|+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~-l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~-~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPH-LPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDL-DPLAS-CPKLE 116 (233)
T ss_pred ccceecccccchhh--cccCCC-ccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhc-chhcc-CCccc
Confidence 45566777766532 233444 66777777777777655443 223356677777777643222222 22334 77777
Q ss_pred EEeeccccC-CCCCCccccccccCCCCCcEEEccCCc
Q 039739 112 YLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYND 147 (628)
Q Consensus 112 ~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~ 147 (628)
+|.+-++.+ ....-.. -.+.++++|+.||+..-.
T Consensus 117 ~Ltll~Npv~~k~~YR~--yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRL--YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCcee--EEEEecCcceEeehhhhh
Confidence 777777766 2212222 247778888888876543
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.68 E-value=4.7e-06 Score=88.05 Aligned_cols=13 Identities=31% Similarity=0.197 Sum_probs=6.9
Q ss_pred CCCCcEEECCCCc
Q 039739 552 LSQLSHLILGHNN 564 (628)
Q Consensus 552 l~~L~~L~l~~~~ 564 (628)
+.+++.+++.++.
T Consensus 426 ~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 426 CSNLKDLDLSGCR 438 (482)
T ss_pred hhccccCCccCcc
Confidence 4445555555553
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=4.6e-06 Score=88.10 Aligned_cols=138 Identities=22% Similarity=0.234 Sum_probs=83.7
Q ss_pred cccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccc-ccccccc---CCCccccCccceeecccchhhcCcchhh
Q 039739 27 LHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGC-EVNGLVR---GQGFPHFKSLEHLDMEGALIALNTSFLQ 101 (628)
Q Consensus 27 ~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 101 (628)
...++.|+.|.+..+ .+.+.....+...+++|+.|+++++ ......+ ......+++|+.|+++++. .+.+....
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~isd~~l~ 262 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG-LVTDIGLS 262 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh-ccCchhHH
Confidence 344688888888876 4554444445445888888888763 2111111 1134567888888888873 25666666
Q ss_pred hhhccCCCccEEeecccc-CCCCCCccccccccCCCCCcEEEccCCcccc--cCchhhhcCCCCCEEEcc
Q 039739 102 IIGESMPSLKYLSLFGSI-LGTNSSRILDRGLCSLVHLQVLNIAYNDLRG--SLPWCLANMTSLRILDVS 168 (628)
Q Consensus 102 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~ 168 (628)
.++..|++|++|.+.+|. +++++ +. .....++.|++|++++|.... .+.....++++|+.+.+.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~g--l~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEG--LV-SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhH--HH-HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 666668888888877776 33311 11 234667788888888776531 123334456666665543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.63 E-value=0.00017 Score=60.55 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=44.7
Q ss_pred cccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCc
Q 039739 355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFV 434 (628)
Q Consensus 355 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 434 (628)
.|..+++|+.+.+.. .+. .+....+.++++|+.+.+..+ +.......+.++++++.+.+.+ .+.......+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 344555555555543 232 444444555555555555543 4333344444555555555543 222122334455556
Q ss_pred ccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCC
Q 039739 435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483 (628)
Q Consensus 435 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 483 (628)
++.+.+..+ +.......|.++ .|+.+.+.+ .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666665443 332334445555 666666554 2232444445555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=4.4e-05 Score=68.87 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCC--CCCCcchhHhhccCCCCceEecccccccccccCCCccccC
Q 039739 4 FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSS--SLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFK 81 (628)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 81 (628)
+..|+.|++.+..++.+.. +..+++|++|.+|.| .+.+........ +|+|++|++++|.+...-.-..+..++
T Consensus 42 ~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhc
Confidence 4456666666666555322 555677777777777 555443433334 677777777777655321112356666
Q ss_pred ccceeecccchhhcCcchhhhhhccCCCccEEe
Q 039739 82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLS 114 (628)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 114 (628)
+|..|++..|......+.-..++.-+++|++|+
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 677777776632222222223333255555554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00027 Score=59.22 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=49.9
Q ss_pred CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414 (628)
Q Consensus 335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 414 (628)
+++|+.+.+.. .+.......|..+++|+.+.+.++ +. .++...+.++++++.+.+.. .+.......+..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 45566666553 333333445666666777766653 33 55666666666677777754 3333333455556677777
Q ss_pred EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcc
Q 039739 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ 460 (628)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 460 (628)
.+..+ +.......+.++ .++.+.+.. .+.......|.++++|+
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 76543 333344556665 777776665 33334455666666653
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=1.5e-05 Score=64.13 Aligned_cols=82 Identities=23% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739 107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 186 (628)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~ 186 (628)
..+|...++++|.+.+ .|.+--.+.+.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|. .+..+.+
T Consensus 52 ~~el~~i~ls~N~fk~----fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L~~ 124 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK----FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPLIK 124 (177)
T ss_pred CceEEEEecccchhhh----CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHHHh
Confidence 3444444444444433 33222233344444444444444 33444444444444444444443 3333 3333444
Q ss_pred ccEEEcccC
Q 039739 187 IEELYLSNN 195 (628)
Q Consensus 187 L~~L~l~~~ 195 (628)
+-.|+..++
T Consensus 125 l~~Lds~~n 133 (177)
T KOG4579|consen 125 LDMLDSPEN 133 (177)
T ss_pred HHHhcCCCC
Confidence 444444433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=5.5e-05 Score=68.51 Aligned_cols=100 Identities=24% Similarity=0.278 Sum_probs=68.2
Q ss_pred CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceE
Q 039739 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHI 462 (628)
Q Consensus 384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 462 (628)
+.+.++|++-+|.+++ ......|+.|++|.++-|+++.. ..+..|+.|++|+++.|.|.+. ....+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4566777777777765 33445788888888888887643 3467888888888888877532 22356788888888
Q ss_pred ECCCCcCCCCCccc-----ccCCCCCCEEE
Q 039739 463 MMPKNHLEGPIPVE-----FCQLDWLQILD 487 (628)
Q Consensus 463 ~l~~~~~~~~~~~~-----l~~l~~L~~L~ 487 (628)
++..|.--+..+.. +..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88887654333222 55677777775
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00062 Score=61.68 Aligned_cols=88 Identities=24% Similarity=0.348 Sum_probs=50.7
Q ss_pred CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccC
Q 039739 55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCS 134 (628)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 134 (628)
+..|+.|.+.++..+.. ..|..+++|+.|.++.+.......+..-... +++|++|++++|++.. + -....+..
T Consensus 42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~--l-stl~pl~~ 114 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKD--L-STLRPLKE 114 (260)
T ss_pred ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccc--c-cccchhhh
Confidence 55566666666555432 2466777888888877743333333332333 6778888887777632 0 00123556
Q ss_pred CCCCcEEEccCCccc
Q 039739 135 LVHLQVLNIAYNDLR 149 (628)
Q Consensus 135 l~~L~~L~L~~~~~~ 149 (628)
+.+|..|++.+|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 666667777766554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00045 Score=62.79 Aligned_cols=104 Identities=23% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739 31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL 110 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 110 (628)
.+.+.|++.+|.+++. .++.-++.|+.|.|+-|.++..- .+..|++|++|.|+.|.|..- .....+.+ +++|
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sl-dEL~YLkn-lpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESL-DELEYLKN-LPSL 90 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccH-HHHHHHhc-Cchh
Confidence 3556666666666532 22222666777777666665432 366667777777766632111 12223333 6666
Q ss_pred cEEeeccccC-CCCCCccccccccCCCCCcEEE
Q 039739 111 KYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLN 142 (628)
Q Consensus 111 ~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~ 142 (628)
++|.|..|.- +..+-+.-...+..+++|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666655443 3311111112344455555553
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.97 E-value=0.0032 Score=33.62 Aligned_cols=21 Identities=52% Similarity=0.765 Sum_probs=13.7
Q ss_pred CCcEEECCCCcccccccccccc
Q 039739 578 QLQLLDLSNNSLHGSIPLCLDN 599 (628)
Q Consensus 578 ~L~~L~l~~~~~~~~ip~~~~~ 599 (628)
+|++|++++|+++ .||+.+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4567777777666 67766554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.77 E-value=0.0001 Score=75.55 Aligned_cols=193 Identities=23% Similarity=0.237 Sum_probs=87.4
Q ss_pred CCEEeCCCCCC--CCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCC----CCceEecccccccccccCCCcccc
Q 039739 7 LNTLYLSSNNF--TDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFP----SLKNLSMIGCEVNGLVRGQGFPHF 80 (628)
Q Consensus 7 L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~~~~~~~l 80 (628)
+.+|.|.+|.+ ++...+...+...+.|..|++++|.+.+.....+++.++ .+++|.+..|.++....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------- 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------- 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch-------
Confidence 45556666655 233334455555666666666666666555555544322 23334444443332211
Q ss_pred CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccccccc----CCCCCcEEEccCCccccc----C
Q 039739 81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLC----SLVHLQVLNIAYNDLRGS----L 152 (628)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~l~~L~~L~L~~~~~~~~----~ 152 (628)
..+...+.. ..+++.++++.|.+...+.......+. ...++++|++++|.++.. .
T Consensus 162 ----------------~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 162 ----------------APLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred ----------------HHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 112233333 444555555544442222222222333 255556666655554421 1
Q ss_pred chhhhcCCC-CCEEEccccccccc----cCCCCCCCC-CcccEEEcccCeeeeecC---CCCcCCCCcccEEeccCCccc
Q 039739 153 PWCLANMTS-LRILDVSSNQLTGS----ISSSPLVHL-TSIEELYLSNNHFQIPIS---LEPFFNHSRLKSFYADNNEIN 223 (628)
Q Consensus 153 ~~~l~~l~~-L~~L~l~~~~~~~~----l~~~~l~~l-~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~ 223 (628)
...+...++ ++.+++..|.+.+. +.. .+..+ ..+++++++.|.++.... ...+..+++++++.+.+|.+.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 112223333 45566655554311 111 12233 455666666666552211 123445556666666666655
Q ss_pred c
Q 039739 224 A 224 (628)
Q Consensus 224 ~ 224 (628)
.
T Consensus 304 ~ 304 (478)
T KOG4308|consen 304 D 304 (478)
T ss_pred c
Confidence 4
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.003 Score=54.91 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCcc-ccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739 32 NLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFP-HFKSLEHLDMEGALIALNTSFLQIIGESMPSL 110 (628)
Q Consensus 32 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 110 (628)
.++.++-+++.|..+....+.+ ++.++.|.+.+|...+.---+.+. -.++|+.|++++|+ .+.+....-+.+ +++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~-lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLK-LKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHH-hhhh
Confidence 4677777777777777777777 788888888777644331111222 35778888888876 566666677777 7888
Q ss_pred cEEeecccc
Q 039739 111 KYLSLFGSI 119 (628)
Q Consensus 111 ~~L~l~~~~ 119 (628)
+.|.+.+-.
T Consensus 179 r~L~l~~l~ 187 (221)
T KOG3864|consen 179 RRLHLYDLP 187 (221)
T ss_pred HHHHhcCch
Confidence 887776643
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.01 Score=31.69 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=8.3
Q ss_pred CcEEECCCCcCCccCCccc
Q 039739 555 LSHLILGHNNLEGEVPVQL 573 (628)
Q Consensus 555 L~~L~l~~~~i~~~~~~~l 573 (628)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 444443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.36 E-value=0.027 Score=27.77 Aligned_cols=16 Identities=63% Similarity=0.906 Sum_probs=7.2
Q ss_pred CCcEEECCCCccccccc
Q 039739 578 QLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 578 ~L~~L~l~~~~~~~~ip 594 (628)
+|+.|+|++|++. ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 5666666666655 444
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.0072 Score=52.66 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccC-CCCCCccccccccCC
Q 039739 57 SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL-GTNSSRILDRGLCSL 135 (628)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~l 135 (628)
.++.++-+++.+...... -+.+++.++.|.+.+|. .+.+.....++...++|+.|++++|.- ++. -...+.++
T Consensus 102 ~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck-~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~----GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCK-YFDDWCLERLGGLAPSLQDLDLSGCPRITDG----GLACLLKL 175 (221)
T ss_pred eEEEEecCCchHHHHHHH-HHhccchhhhheecccc-chhhHHHHHhcccccchheeeccCCCeechh----HHHHHHHh
Confidence 355666666665543221 35666777777777774 456666677777678888888888865 441 11346677
Q ss_pred CCCcEEEccCCc
Q 039739 136 VHLQVLNIAYND 147 (628)
Q Consensus 136 ~~L~~L~L~~~~ 147 (628)
++|+.|.+++-.
T Consensus 176 knLr~L~l~~l~ 187 (221)
T KOG3864|consen 176 KNLRRLHLYDLP 187 (221)
T ss_pred hhhHHHHhcCch
Confidence 788887776543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.76 E-value=0.0012 Score=67.76 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=42.2
Q ss_pred CceEecccccccccccC---CCccccCccceeecccchhhcCcchhhhhhccC----CCccEEeeccccCCCCCCccccc
Q 039739 58 LKNLSMIGCEVNGLVRG---QGFPHFKSLEHLDMEGALIALNTSFLQIIGESM----PSLKYLSLFGSILGTNSSRILDR 130 (628)
Q Consensus 58 L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~ 130 (628)
+..|.+.+|.+...... .++.....|..|+++++. +.+.....+.+.+ ..+++|++..|.++..+.....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~--l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN--LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC--CccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 44455555544332111 134555566666666663 2233233332222 23455555556554444333334
Q ss_pred cccCCCCCcEEEccCCcc
Q 039739 131 GLCSLVHLQVLNIAYNDL 148 (628)
Q Consensus 131 ~l~~l~~L~~L~L~~~~~ 148 (628)
.+.....++.++++.|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccchhHHHHHhccc
Confidence 555566666666666654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.67 E-value=0.14 Score=28.46 Aligned_cols=21 Identities=52% Similarity=0.637 Sum_probs=13.7
Q ss_pred CCCCcEEECCCCcccccccccc
Q 039739 576 LNQLQLLDLSNNSLHGSIPLCL 597 (628)
Q Consensus 576 l~~L~~L~l~~~~~~~~ip~~~ 597 (628)
+++|++|++.+|++. .||++.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356677777777776 566654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.67 E-value=0.14 Score=28.46 Aligned_cols=21 Identities=52% Similarity=0.637 Sum_probs=13.7
Q ss_pred CCCCcEEECCCCcccccccccc
Q 039739 576 LNQLQLLDLSNNSLHGSIPLCL 597 (628)
Q Consensus 576 l~~L~~L~l~~~~~~~~ip~~~ 597 (628)
+++|++|++.+|++. .||++.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 356677777777776 566654
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.33 E-value=0.059 Score=29.38 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=9.6
Q ss_pred CCCcEEecCCCCCCCcchhHh
Q 039739 31 TNLEYLTLDSSSLHISLLQSI 51 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l 51 (628)
++|++|++++|.|++..+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555554444433
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.56 E-value=0.74 Score=25.51 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=5.9
Q ss_pred CCcEEECCCCcCC
Q 039739 554 QLSHLILGHNNLE 566 (628)
Q Consensus 554 ~L~~L~l~~~~i~ 566 (628)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.56 E-value=0.74 Score=25.51 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=5.9
Q ss_pred CCcEEECCCCcCC
Q 039739 554 QLSHLILGHNNLE 566 (628)
Q Consensus 554 ~L~~L~l~~~~i~ 566 (628)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.91 E-value=0.73 Score=25.60 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=12.5
Q ss_pred CCCCcEEecCCC-CCCCcchhHhh
Q 039739 30 FTNLEYLTLDSS-SLHISLLQSIA 52 (628)
Q Consensus 30 ~~~L~~L~l~~~-~~~~~~~~~l~ 52 (628)
|++|++|++++| .+++.....++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 355666666665 35555444443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.90 E-value=0.79 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=14.7
Q ss_pred CCCcEEecCCCCCCCcchhHhhc
Q 039739 31 TNLEYLTLDSSSLHISLLQSIAS 53 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~ 53 (628)
++|++|+|++|.+.......++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45677777777776655555544
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.91 E-value=5.3 Score=40.20 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=48.8
Q ss_pred CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCC-c-cccCccceeecccchhhcCcchhhhhhc--c
Q 039739 31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQG-F-PHFKSLEHLDMEGALIALNTSFLQIIGE--S 106 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~ 106 (628)
+.+++++++.|.+.+..+..+.. +-.. +++..|..++...... . +.-..+++++++.+ ...+.++..+.. .
T Consensus 165 pr~r~~dls~npi~dkvpihl~~--p~~p-l~lr~c~lsskfis~l~~qsg~~~lteldls~n--~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ--PGNP-LSLRVCELSSKFISKLLIQSGRLWLTELDLSTN--GGKDDIPRTLNKKAG 239 (553)
T ss_pred chhhhhccCCCcccccCCccccC--CCCc-cchhhhhhhhhHHHHhhhhhccccccccccccC--CCCccchhHHHHhhh
Confidence 34566666666666555555433 1111 4444444333211000 0 11134666777666 444444433222 1
Q ss_pred CCCccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCc
Q 039739 107 MPSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYND 147 (628)
Q Consensus 107 ~~~L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~ 147 (628)
-.-++.++.++..+ .++.++. -....-.+++..+++.+.
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~--l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSP--LAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhhhhcccccccccchhhcccc--cccccccccchhhhccCC
Confidence 23456666666555 2211111 123444566666666554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.94 E-value=1.6 Score=24.27 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=13.4
Q ss_pred CCCCCEEeCCCCCCCCccc
Q 039739 4 FPSLNTLYLSSNNFTDIAT 22 (628)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~ 22 (628)
+++|++|+++.|.|+.++.
T Consensus 1 L~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 1 LTNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CCccCEEECCCCccceecC
Confidence 4678888888887776433
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.43 E-value=1.5 Score=24.36 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=14.4
Q ss_pred CCCcEEECCCCccccccccc
Q 039739 577 NQLQLLDLSNNSLHGSIPLC 596 (628)
Q Consensus 577 ~~L~~L~l~~~~~~~~ip~~ 596 (628)
++|+.|++++|+++ ++|+.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 36778888888887 78864
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.52 E-value=1.2 Score=45.52 Aligned_cols=85 Identities=26% Similarity=0.361 Sum_probs=50.3
Q ss_pred ccCCCCcEEecCCCCCCC-cchhHhhccCCCCceEecccc--cccccccCCCccc--cCccceeecccchhhc----Ccc
Q 039739 28 HNFTNLEYLTLDSSSLHI-SLLQSIASIFPSLKNLSMIGC--EVNGLVRGQGFPH--FKSLEHLDMEGALIAL----NTS 98 (628)
Q Consensus 28 ~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~----~~~ 98 (628)
.+++.+..++|++|.+.. .....+....|+|+.|+|++| .+... ..+.+ ...|++|-+.||++-- ...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 446777788888876532 334556666788888888887 32221 12333 3456788888884311 112
Q ss_pred hhhhhhccCCCccEEee
Q 039739 99 FLQIIGESMPSLKYLSL 115 (628)
Q Consensus 99 ~~~~~~~~~~~L~~L~l 115 (628)
....|.+.+|+|..||=
T Consensus 292 yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLDG 308 (585)
T ss_pred HHHHHHHhcchheeecC
Confidence 22345555899988863
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.95 E-value=0.11 Score=46.42 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=58.0
Q ss_pred CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739 107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 186 (628)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~ 186 (628)
+...+.||++.+.... +- ..++.++.|..|+++.+.+. .+|..+.+.+.+++++++.|... ..|. .++..+.
T Consensus 41 ~kr~tvld~~s~r~vn----~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~~ 112 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN----LG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEPH 112 (326)
T ss_pred cceeeeehhhhhHHHh----hc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccCC
Confidence 5666667766665522 22 35666677777778777776 56777777777888887777765 6666 6777788
Q ss_pred ccEEEcccCeee
Q 039739 187 IEELYLSNNHFQ 198 (628)
Q Consensus 187 L~~L~l~~~~~~ 198 (628)
+++++...+++.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888877777654
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.04 E-value=0.14 Score=45.93 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=49.7
Q ss_pred cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739 525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
|+-++.|..|+++.|.+. ..|+.++....+..+++..|..+ ..|..+...+.+++++..++++.
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 444667788888888776 67777887777888888777777 67888888888888888888764
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.65 E-value=32 Score=34.98 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=18.1
Q ss_pred CccEEEcccccCCCcccc--cccCCCCccEEECcCC
Q 039739 337 SLFSLNISMNALDGSIPS--SFGNMKFLQILDLSNN 370 (628)
Q Consensus 337 ~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l~~~ 370 (628)
.++++.++.|...++... .+..-++.+.+++.+.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred eeeEeeccccccccccccccceeecccccccccccc
Confidence 466777776666543322 2333455566655543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.47 E-value=6.1 Score=40.67 Aligned_cols=85 Identities=20% Similarity=0.075 Sum_probs=49.5
Q ss_pred CCCCceEecccccccccccCCCc-cccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccC-CCCCCccccccc
Q 039739 55 FPSLKNLSMIGCEVNGLVRGQGF-PHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL-GTNSSRILDRGL 132 (628)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l 132 (628)
.|.+..+++++|++-.......+ ...++|..|+|++|.. ......+.-.-....|++|-+.||.+ ++ . ....+.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~-~~~~~~el~K~k~l~Leel~l~GNPlc~t-f-~~~s~yv 293 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHS-KISSESELDKLKGLPLEELVLEGNPLCTT-F-SDRSEYV 293 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchh-hhcchhhhhhhcCCCHHHeeecCCccccc-h-hhhHHHH
Confidence 78888888888876543222222 4578899999998731 22222222122256788888888887 32 0 0111122
Q ss_pred ----cCCCCCcEEE
Q 039739 133 ----CSLVHLQVLN 142 (628)
Q Consensus 133 ----~~l~~L~~L~ 142 (628)
..+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2567777775
No 93
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=23.98 E-value=39 Score=18.75 Aligned_cols=13 Identities=54% Similarity=0.631 Sum_probs=6.8
Q ss_pred CCEEeCCCCCCCC
Q 039739 7 LNTLYLSSNNFTD 19 (628)
Q Consensus 7 L~~L~l~~~~~~~ 19 (628)
|++|.|....+.+
T Consensus 2 LKtL~L~~v~f~~ 14 (26)
T PF07723_consen 2 LKTLHLDSVVFSD 14 (26)
T ss_pred CeEEEeeEEEECC
Confidence 5555555554433
Done!