Query 039739
Match_columns 628
No_of_seqs 258 out of 3077
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 22:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-63 1.1E-67 547.8 42.9 576 1-599 73-726 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.2E-60 1.4E-64 523.1 38.3 583 5-610 50-717 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-52 1.2E-56 456.3 44.0 571 5-593 25-625 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.1E-52 2.4E-56 454.0 42.7 573 7-597 6-604 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8.2E-50 2.8E-54 431.8 41.2 540 7-594 14-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 3E-48 1E-52 419.6 41.0 520 5-568 33-562 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-48 9.3E-53 419.9 37.9 531 7-594 13-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3E-47 1E-51 411.7 35.8 519 5-568 32-560 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 3.4E-44 1.2E-48 385.3 37.2 516 7-596 9-537 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-44 5.2E-49 403.0 35.7 535 8-591 7-561 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 9.1E-44 3.1E-48 396.7 37.0 513 34-601 7-550 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 3.8E-43 1.3E-47 377.2 33.2 496 5-570 28-535 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3E-42 1E-46 368.2 37.7 467 81-594 26-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-41 1.1E-45 360.2 32.0 496 4-570 4-514 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-40 1.3E-44 349.2 26.9 456 59-594 3-485 (520)
16 4eco_A Uncharacterized protein 100.0 2.2E-40 7.4E-45 357.2 22.6 356 248-613 193-603 (636)
17 4eco_A Uncharacterized protein 100.0 2.2E-40 7.6E-45 357.1 22.5 455 31-590 81-600 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 9.1E-39 3.1E-43 349.5 28.4 391 146-590 435-864 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-38 1.3E-42 343.3 33.1 532 9-590 35-580 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 8.4E-39 2.9E-43 338.9 27.2 455 8-496 3-483 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 7.9E-37 2.7E-41 332.8 37.6 525 23-600 20-565 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 1.9E-37 6.6E-42 339.0 30.3 353 254-616 440-846 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-37 6E-42 331.3 27.4 461 55-594 30-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.5E-37 2.9E-41 326.0 27.6 177 360-542 331-510 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.5E-34 5.1E-39 301.1 31.5 378 136-595 30-413 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.5E-33 5.2E-38 293.5 30.8 393 8-498 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 4.3E-34 1.5E-38 294.4 23.8 298 262-604 111-425 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.4E-33 4.9E-38 290.5 25.2 427 29-601 9-440 (454)
29 1o6v_A Internalin A; bacterial 100.0 9.6E-32 3.3E-36 279.8 32.8 281 258-566 108-388 (466)
30 1o6v_A Internalin A; bacterial 100.0 3.7E-31 1.3E-35 275.4 35.3 346 107-544 45-390 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-31 9E-36 273.9 25.0 360 102-599 37-396 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 5.8E-31 2E-35 275.4 24.6 301 262-566 32-333 (477)
33 4fmz_A Internalin; leucine ric 100.0 1E-29 3.5E-34 254.4 31.7 308 257-590 39-346 (347)
34 3bz5_A Internalin-J, INLJ; leu 100.0 4E-30 1.4E-34 265.0 25.5 358 76-549 37-394 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 3.3E-30 1.1E-34 269.7 22.9 300 238-542 33-333 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 3.7E-29 1.3E-33 254.4 28.9 310 260-591 43-353 (390)
37 4fmz_A Internalin; leucine ric 100.0 1E-28 3.4E-33 247.2 29.5 304 107-494 43-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 2.7E-28 9.2E-33 261.5 27.7 311 260-592 49-360 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 3.1E-28 1.1E-32 247.5 24.2 300 285-601 43-342 (390)
40 1z7x_W Ribonuclease inhibitor; 100.0 7.7E-32 2.6E-36 281.2 -4.6 344 256-599 50-449 (461)
41 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-27 4.4E-32 237.2 25.2 287 288-588 34-331 (332)
42 3ogk_B Coronatine-insensitive 100.0 5E-30 1.7E-34 276.4 7.5 435 23-491 65-548 (592)
43 1xku_A Decorin; proteoglycan, 100.0 4.3E-27 1.5E-31 233.3 27.7 268 311-588 52-330 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 9.9E-31 3.4E-35 272.8 -0.7 339 107-470 27-411 (461)
45 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-28 4.8E-33 241.3 14.6 250 311-589 50-303 (313)
46 3oja_B Anopheles plasmodium-re 100.0 1.7E-27 5.8E-32 255.4 23.9 300 285-601 49-348 (597)
47 3ogk_B Coronatine-insensitive 100.0 2.4E-29 8.2E-34 271.0 5.1 424 34-495 53-527 (592)
48 1xku_A Decorin; proteoglycan, 99.9 5E-26 1.7E-30 225.7 27.8 289 263-564 32-330 (330)
49 1ogq_A PGIP-2, polygalacturona 99.9 9.6E-28 3.3E-32 235.3 14.5 251 287-566 50-304 (313)
50 2ft3_A Biglycan; proteoglycan, 99.9 4E-26 1.4E-30 226.5 23.9 287 263-564 34-331 (332)
51 2p1m_B Transport inhibitor res 99.9 1E-28 3.6E-33 266.2 -0.7 443 9-491 47-541 (594)
52 2z80_A TOLL-like receptor 2, v 99.9 5.8E-26 2E-30 227.3 16.2 260 311-594 52-318 (353)
53 2z66_A Variable lymphocyte rec 99.9 3.5E-25 1.2E-29 217.1 21.1 247 314-591 10-262 (306)
54 3zyj_A Leucine-rich repeat-con 99.9 1.6E-24 5.4E-29 223.6 23.9 247 312-589 44-291 (440)
55 4fcg_A Uncharacterized protein 99.9 7.3E-25 2.5E-29 216.0 19.8 235 335-590 80-314 (328)
56 3zyi_A Leucine-rich repeat-con 99.9 2.2E-24 7.5E-29 223.4 23.6 246 313-589 56-302 (452)
57 2z66_A Variable lymphocyte rec 99.9 5.2E-25 1.8E-29 215.9 17.5 282 290-601 10-298 (306)
58 2z80_A TOLL-like receptor 2, v 99.9 4.9E-25 1.7E-29 220.6 17.1 284 260-569 29-317 (353)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-24 6.6E-29 209.4 19.4 214 384-599 55-270 (285)
60 4fcg_A Uncharacterized protein 99.9 1.4E-24 4.7E-29 214.1 18.3 212 385-602 81-302 (328)
61 1ozn_A Reticulon 4 receptor; N 99.9 6.7E-24 2.3E-28 205.6 22.1 227 363-594 14-242 (285)
62 2p1m_B Transport inhibitor res 99.9 1.3E-26 4.3E-31 249.9 2.1 430 3-444 64-542 (594)
63 3zyj_A Leucine-rich repeat-con 99.9 2E-23 6.8E-28 215.4 24.6 247 288-542 44-292 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 2E-23 7E-28 216.1 23.2 247 288-542 55-303 (452)
65 3g06_A SSPH2 (leucine-rich rep 99.9 9.3E-23 3.2E-27 216.1 28.6 274 288-607 41-314 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2E-25 6.8E-30 219.5 7.4 266 313-594 12-280 (317)
67 1wwl_A Monocyte differentiatio 99.9 7.1E-25 2.4E-29 215.0 8.0 249 309-591 41-310 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 4E-24 1.4E-28 210.2 11.6 248 338-601 12-262 (317)
69 3oja_A Leucine-rich immune mol 99.9 6.5E-23 2.2E-27 213.2 17.0 235 336-585 34-270 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-21 4.1E-26 207.6 24.9 269 262-577 40-308 (622)
71 2o6q_A Variable lymphocyte rec 99.9 2.5E-21 8.4E-26 185.6 22.8 201 362-590 18-218 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 1E-21 3.4E-26 189.3 19.1 208 360-593 28-240 (276)
73 3rfs_A Internalin B, repeat mo 99.9 1.2E-21 4.2E-26 187.9 18.8 213 357-605 38-250 (272)
74 3oja_A Leucine-rich immune mol 99.9 1.4E-22 5E-27 210.6 13.2 236 310-561 33-270 (487)
75 1wwl_A Monocyte differentiatio 99.9 6.8E-23 2.3E-27 200.9 10.0 246 286-566 42-309 (312)
76 1p9a_G Platelet glycoprotein I 99.9 5.7E-21 1.9E-25 184.5 21.0 202 356-566 6-208 (290)
77 2z62_A TOLL-like receptor 4, v 99.9 3.5E-21 1.2E-25 185.4 19.4 221 316-566 12-237 (276)
78 2o6q_A Variable lymphocyte rec 99.9 1.1E-20 3.8E-25 181.0 22.0 202 337-566 17-218 (270)
79 3rfs_A Internalin B, repeat mo 99.8 7.3E-21 2.5E-25 182.5 15.1 158 335-497 40-197 (272)
80 3goz_A Leucine-rich repeat-con 99.8 4.4E-22 1.5E-26 199.6 5.3 253 315-568 2-299 (362)
81 1p9a_G Platelet glycoprotein I 99.8 6.9E-20 2.3E-24 176.9 20.4 203 307-543 6-209 (290)
82 2ast_B S-phase kinase-associat 99.8 1.7E-21 6E-26 193.7 9.4 264 312-607 48-323 (336)
83 3goz_A Leucine-rich repeat-con 99.8 2.2E-21 7.6E-26 194.4 6.5 251 293-544 4-299 (362)
84 2xwt_C Thyrotropin receptor; s 99.8 7E-20 2.4E-24 172.1 15.6 196 386-588 32-237 (239)
85 1h6u_A Internalin H; cell adhe 99.8 2.9E-19 1E-23 174.4 19.7 194 356-566 37-230 (308)
86 2ca6_A RAN GTPase-activating p 99.8 1.1E-21 3.6E-26 198.9 1.9 247 327-594 24-320 (386)
87 3m19_A Variable lymphocyte rec 99.8 6.9E-19 2.4E-23 166.6 20.2 180 385-591 14-193 (251)
88 4glp_A Monocyte differentiatio 99.8 2.3E-20 7.8E-25 182.8 10.1 226 337-591 65-308 (310)
89 2xwt_C Thyrotropin receptor; s 99.8 1.9E-19 6.6E-24 169.1 15.4 197 337-564 32-237 (239)
90 3m19_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 165.2 19.5 180 361-568 15-194 (251)
91 1h6u_A Internalin H; cell adhe 99.8 1E-18 3.4E-23 170.6 18.3 192 335-543 40-231 (308)
92 2ast_B S-phase kinase-associat 99.8 5.9E-20 2E-24 182.6 9.7 224 262-491 47-282 (336)
93 4ay9_X Follicle-stimulating ho 99.8 9.8E-19 3.4E-23 174.2 18.4 243 314-587 12-256 (350)
94 2ca6_A RAN GTPase-activating p 99.8 6.4E-21 2.2E-25 193.2 1.9 246 303-569 24-319 (386)
95 4glp_A Monocyte differentiatio 99.8 5.5E-19 1.9E-23 173.0 14.9 228 262-495 64-308 (310)
96 2o6s_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 154.4 16.2 163 385-578 28-190 (208)
97 2o6s_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 154.4 15.3 162 434-603 29-191 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1E-17 3.5E-22 166.8 16.9 224 363-595 12-241 (350)
99 3cvr_A Invasion plasmid antige 99.8 1.5E-17 5.2E-22 173.9 18.0 189 361-602 60-255 (571)
100 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 157.1 16.1 186 364-566 28-213 (291)
101 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.8E-21 147.0 15.5 133 433-589 32-164 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 8.8E-21 145.2 15.6 132 435-590 34-166 (220)
103 3cvr_A Invasion plasmid antige 99.7 3E-16 1E-20 164.1 17.8 194 336-575 59-252 (571)
104 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 169.7 14.3 190 361-567 22-211 (605)
105 1h6t_A Internalin B; cell adhe 99.7 3E-16 1E-20 151.5 16.0 173 357-544 43-215 (291)
106 3e6j_A Variable lymphocyte rec 99.7 1E-15 3.6E-20 142.1 17.4 134 433-591 40-173 (229)
107 1m9s_A Internalin B; cell inva 99.7 2.5E-16 8.5E-21 166.8 13.9 199 337-552 22-220 (605)
108 2xot_A Amphoterin-induced prot 99.7 2.7E-16 9.2E-21 157.2 13.1 174 364-542 22-202 (361)
109 1xeu_A Internalin C; cellular 99.7 1.9E-16 6.6E-21 150.3 10.8 168 384-566 18-185 (263)
110 4ezg_A Putative uncharacterize 99.7 3E-16 1E-20 142.3 11.3 152 407-590 42-194 (197)
111 2xot_A Amphoterin-induced prot 99.7 5.3E-16 1.8E-20 155.0 13.4 175 388-566 21-202 (361)
112 3sb4_A Hypothetical leucine ri 99.7 2.2E-16 7.6E-21 155.8 10.4 288 261-584 24-328 (329)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 2.2E-15 7.4E-20 138.9 15.1 133 362-494 34-166 (220)
114 2v9t_B SLIT homolog 2 protein 99.6 2.3E-15 8E-20 138.7 15.3 133 361-494 33-165 (220)
115 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.9E-20 137.8 12.6 151 335-494 43-194 (197)
116 3sb4_A Hypothetical leucine ri 99.6 6.4E-16 2.2E-20 152.5 10.9 104 334-440 224-328 (329)
117 3e6j_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 136.6 17.1 152 387-566 21-172 (229)
118 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.5E-20 144.5 10.0 170 359-544 18-187 (263)
119 4fdw_A Leucine rich hypothetic 99.6 7.3E-14 2.5E-18 140.4 19.8 265 286-589 112-382 (401)
120 4fs7_A Uncharacterized protein 99.6 1.2E-13 4E-18 139.8 21.2 153 49-219 65-217 (394)
121 2ell_A Acidic leucine-rich nuc 99.6 1E-14 3.5E-19 128.5 10.9 138 432-596 23-165 (168)
122 4fs7_A Uncharacterized protein 99.6 1.2E-13 4.2E-18 139.7 20.4 314 127-490 62-375 (394)
123 4fdw_A Leucine rich hypothetic 99.5 3.1E-13 1.1E-17 135.8 20.1 249 309-591 111-359 (401)
124 2ell_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 125.4 10.8 140 407-572 22-165 (168)
125 1w8a_A SLIT protein; signaling 99.5 1E-13 3.4E-18 124.8 13.4 130 436-592 11-141 (192)
126 2je0_A Acidic leucine-rich nuc 99.5 4.7E-14 1.6E-18 121.4 9.5 128 433-586 17-149 (149)
127 1dce_A Protein (RAB geranylger 99.5 3.5E-16 1.2E-20 164.7 -4.9 184 407-597 347-552 (567)
128 1dce_A Protein (RAB geranylger 99.5 1.4E-15 4.9E-20 160.0 -1.3 180 308-495 346-547 (567)
129 2o6r_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 119.2 14.4 114 457-594 28-141 (177)
130 1w8a_A SLIT protein; signaling 99.5 7.5E-14 2.6E-18 125.6 9.3 129 363-495 11-140 (192)
131 2wfh_A SLIT homolog 2 protein 99.5 5.1E-13 1.7E-17 120.0 14.0 42 525-566 98-139 (193)
132 2je0_A Acidic leucine-rich nuc 99.5 9.2E-14 3.1E-18 119.6 7.9 131 407-562 15-149 (149)
133 4b8c_D Glucose-repressible alc 99.4 3E-14 1E-18 154.9 3.8 111 384-498 223-333 (727)
134 4b8c_D Glucose-repressible alc 99.4 3.9E-14 1.3E-18 154.0 4.4 178 402-590 217-404 (727)
135 1a9n_A U2A', U2A'; complex (nu 99.4 4.6E-13 1.6E-17 118.7 9.6 105 482-590 43-153 (176)
136 2wfh_A SLIT homolog 2 protein 99.4 2.4E-12 8.1E-17 115.7 13.4 126 364-494 14-139 (193)
137 2o6r_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 112.9 14.5 128 363-494 10-137 (177)
138 4gt6_A Cell surface protein; l 99.3 1.2E-10 4E-15 117.7 22.8 131 354-492 259-389 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 113.1 9.0 133 356-494 15-153 (176)
140 1ds9_A Outer arm dynein; leuci 99.3 1.7E-14 5.9E-19 130.7 -6.1 131 452-590 43-185 (198)
141 4gt6_A Cell surface protein; l 99.3 7.5E-11 2.6E-15 119.2 19.1 293 257-587 58-367 (394)
142 3un9_A NLR family member X1; l 99.3 4.8E-13 1.7E-17 133.1 0.8 165 31-198 72-252 (372)
143 3g39_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 105.6 11.9 104 484-590 12-115 (170)
144 1ds9_A Outer arm dynein; leuci 99.3 2.6E-13 8.8E-18 122.9 -2.1 151 27-191 14-180 (198)
145 2r9u_A Variable lymphocyte rec 99.3 4.2E-11 1.4E-15 105.4 12.1 114 484-601 15-128 (174)
146 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.5E-15 101.9 11.8 104 436-566 12-115 (170)
147 3un9_A NLR family member X1; l 99.2 9.6E-13 3.3E-17 131.0 -2.2 168 55-226 71-255 (372)
148 2r9u_A Variable lymphocyte rec 99.2 1.8E-10 6E-15 101.4 12.4 104 436-566 15-118 (174)
149 4h09_A Hypothetical leucine ri 99.1 1E-08 3.5E-13 103.0 24.8 61 428-489 281-341 (379)
150 4h09_A Hypothetical leucine ri 99.1 1.5E-08 5.3E-13 101.7 23.6 118 335-457 239-356 (379)
151 2ra8_A Uncharacterized protein 98.9 3.9E-09 1.3E-13 103.9 9.6 186 5-198 107-320 (362)
152 2ifg_A High affinity nerve gro 98.9 8.7E-09 3E-13 102.1 10.9 89 453-566 27-116 (347)
153 2ifg_A High affinity nerve gro 98.8 8.2E-09 2.8E-13 102.4 8.0 103 389-494 12-116 (347)
154 2ra8_A Uncharacterized protein 98.7 5.7E-09 1.9E-13 102.8 5.4 41 528-568 278-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 5.3E-09 1.8E-13 92.9 3.5 126 23-173 28-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 4.1E-09 1.4E-13 93.6 2.4 124 2-149 33-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 2E-08 6.8E-13 86.3 1.4 87 30-120 60-151 (176)
158 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7E-12 80.0 2.9 86 56-147 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 4E-06 1.4E-10 78.0 6.0 101 10-115 148-258 (267)
160 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.9E-10 74.9 5.6 82 478-583 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 5.2E-06 1.8E-10 72.8 1.3 125 23-172 33-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 2.1E-05 7E-10 69.0 3.8 117 80-198 40-170 (197)
163 3rfe_A Platelet glycoprotein I 96.1 0.011 3.8E-07 48.1 6.2 56 508-566 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.7 0.024 8.1E-07 46.1 6.8 56 485-542 12-68 (130)
165 2lz0_A Uncharacterized protein 68.5 5.1 0.00018 30.3 3.9 37 452-489 15-51 (100)
166 2lz0_A Uncharacterized protein 62.8 7.6 0.00026 29.3 3.9 44 519-563 10-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-63 Score=547.83 Aligned_cols=576 Identities=29% Similarity=0.395 Sum_probs=502.8
Q ss_pred CCCCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchh--HhhccCCCCceEecccccccccccCCCcc
Q 039739 1 MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQ--SIASIFPSLKNLSMIGCEVNGLVRGQGFP 78 (628)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 78 (628)
|.++++|+.++++.+.+. .+++.++++++|++|+|++|.+.+..+. .+.. +++|++|++++|.+....+...+.
T Consensus 73 l~~L~~L~~l~~~~~~~~---~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHIN---GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp TTTCTTCCEEECTTSCEE---ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCC
T ss_pred HhccCcccccCCcCCCcC---CCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhc
Confidence 345677777777766543 3567899999999999999999887777 8888 999999999999998777775568
Q ss_pred ccCccceeecccchhhcCcchhhh---hhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchh
Q 039739 79 HFKSLEHLDMEGALIALNTSFLQI---IGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC 155 (628)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 155 (628)
++++|++|++++| .+.+..+.. +.. +++|++|++++|.+.. .. .+..+++|++|++++|.+.+..|.
T Consensus 149 ~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~--~~~~l~~L~~L~Ls~n~l~~~~~~- 218 (768)
T 3rgz_A 149 KLNSLEVLDLSAN--SISGANVVGWVLSDG-CGELKHLAISGNKISG----DV--DVSRCVNLEFLDVSSNNFSTGIPF- 218 (768)
T ss_dssp CCTTCSEEECCSS--CCEEETHHHHHHTTC-CTTCCEEECCSSEEES----CC--BCTTCTTCCEEECCSSCCCSCCCB-
T ss_pred cCCCCCEEECCCC--ccCCcCChhhhhhcc-CCCCCEEECCCCcccc----cC--CcccCCcCCEEECcCCcCCCCCcc-
Confidence 9999999999999 666666655 566 9999999999998832 22 348899999999999999977776
Q ss_pred hhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccC
Q 039739 156 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAP 235 (628)
Q Consensus 156 l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 235 (628)
+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..+.. .+++|++|++++|.+.+.++......+
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~- 293 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGAC- 293 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTC-
T ss_pred cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhc-
Confidence 99999999999999999877776 7999999999999999988655532 789999999999998876665533221
Q ss_pred cccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCC-ccC
Q 039739 236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK-RLG 314 (628)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~ 314 (628)
.+|++|++ ..+...+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|+
T Consensus 294 -~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 294 -DTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp -TTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred -CcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 48999999 777788888999999999999999999998888887668999999999999999877888888877 999
Q ss_pred EEEccCCcCCcccchhhhhh-CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739 315 MLDISNNNFRGHIPVEIGDV-LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS 393 (628)
Q Consensus 315 ~L~l~~~~i~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 393 (628)
+|++++|.+.+.++..+... +++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++.. +..+++|+.|+++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLW 450 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECC
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECC
Confidence 99999999988777766532 578999999999999889999999999999999999998666655 4468999999999
Q ss_pred CCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCC
Q 039739 394 NNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI 473 (628)
Q Consensus 394 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 473 (628)
+|.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 99999888888999999999999999999899999999999999999999999999999999999999999999999889
Q ss_pred cccccCCCCCCEEEccCCcCcCCCCCCC----------------------------------------------------
Q 039739 474 PVEFCQLDWLQILDISDNNISGSLPSCF---------------------------------------------------- 501 (628)
Q Consensus 474 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~---------------------------------------------------- 501 (628)
|..+..+++|+.|++++|++.+..|..+
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 9999999999999999999886655421
Q ss_pred -------------------CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCC
Q 039739 502 -------------------HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562 (628)
Q Consensus 502 -------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 562 (628)
...+|+.|++++|++++.+|.. ++.+++|+.|++++|++++.+|..++++++|+.|+|++
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 1356889999999999999887 89999999999999999999999999999999999999
Q ss_pred CcCCccCCccccCCCCCcEEECCCCcccccccccccc
Q 039739 563 NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599 (628)
Q Consensus 563 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~ 599 (628)
|++++.+|+.+.++++|++|++++|+++|.||+.-+-
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhh
Confidence 9999999999999999999999999999999987443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-60 Score=523.08 Aligned_cols=583 Identities=31% Similarity=0.405 Sum_probs=504.8
Q ss_pred CCCCEEeCCCCCCCCccc---hhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccC-CCcccc
Q 039739 5 PSLNTLYLSSNNFTDIAT---ATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRG-QGFPHF 80 (628)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l 80 (628)
.+++.|+|+++.+.+ . +++.+.++++|+.++++.+.+. ..+..+.. +++|++|++++|.+.+.++. ..+.++
T Consensus 50 ~~v~~L~L~~~~l~g--~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNV--GFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp TEEEEEECTTSCCCE--EHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCC-CTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred CcEEEEECCCCCcCC--ccCccChhHhccCcccccCCcCCCcC-CCchhhcc-CCCCCEEECCCCcCCCcCCChHHHhCC
Confidence 468899999998877 4 7788999999999999988764 23466778 99999999999998866553 268999
Q ss_pred CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccccc---ccCCCCCcEEEccCCcccccCchhhh
Q 039739 81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRG---LCSLVHLQVLNIAYNDLRGSLPWCLA 157 (628)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~l~ 157 (628)
++|++|++++| .+.+..+..+...+++|++|++++|.+.. ..+.. +.++++|++|++++|.+.+..+. .
T Consensus 126 ~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~ 197 (768)
T 3rgz_A 126 SGLKFLNVSSN--TLDFPGKVSGGLKLNSLEVLDLSANSISG----ANVVGWVLSDGCGELKHLAISGNKISGDVDV--S 197 (768)
T ss_dssp TTCCEEECCSS--EEECCSSCCSCCCCTTCSEEECCSSCCEE----ETHHHHHHTTCCTTCCEEECCSSEEESCCBC--T
T ss_pred CCCCEEECcCC--ccCCcCCHHHhccCCCCCEEECCCCccCC----cCChhhhhhccCCCCCEEECCCCcccccCCc--c
Confidence 99999999999 56666666553339999999999999843 33234 78999999999999999865543 7
Q ss_pred cCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcc
Q 039739 158 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF 237 (628)
Q Consensus 158 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 237 (628)
.+++|++|++++|.+.+.+|. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.. ...
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~ 269 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-----PLK 269 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-----CCT
T ss_pred cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-----ccC
Confidence 899999999999999865654 9999999999999999874333 46789999999999999987655432 455
Q ss_pred cceeeeccCCCCCCcccccccccC-CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcc-cccCCccCE
Q 039739 238 QLSRLSLSSGYGDGFIFPKFLYHQ-HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLP-IHSHKRLGM 315 (628)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~ 315 (628)
+|++|++ ..+...+.+|..+... ++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+.. +..+++|++
T Consensus 270 ~L~~L~L-~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 270 SLQYLSL-AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp TCCEEEC-CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCEEEC-cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 8999999 6777777788877764 999999999999988888776 79999999999999988656654 889999999
Q ss_pred EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccC--CCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGN--MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS 393 (628)
Q Consensus 316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 393 (628)
|++++|.+.+.+|..+....++|+.|++++|.+.+..|..+.. +++|+.|++++|.+.+.++.. +..+++|++|+++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLS 426 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECC
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECc
Confidence 9999999988899888874459999999999998877777766 889999999999998666655 4469999999999
Q ss_pred CCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCC
Q 039739 394 NNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI 473 (628)
Q Consensus 394 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 473 (628)
+|.+++..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccc----------------------------
Q 039739 474 PVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGT---------------------------- 524 (628)
Q Consensus 474 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~---------------------------- 524 (628)
|..+..+++|++|++++|++.+..|..+. +++|+.|++++|++++.+|...
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 99999999999999999999988887665 8999999999999987776542
Q ss_pred -----------------------------------------cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739 525 -----------------------------------------FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563 (628)
Q Consensus 525 -----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 563 (628)
+..+++|+.|++++|++++.+|..++.+++|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 234578999999999999999999999999999999999
Q ss_pred cCCccCCccccCCCCCcEEECCCCcccccccccccccc----ccccccCCc
Q 039739 564 NLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT----LHESYNNSS 610 (628)
Q Consensus 564 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~----~~~~~~~~~ 610 (628)
++++.+|+.|.++++|++|++++|+++|.||+.+.+++ ++..+|+..
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999998876 666777755
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-52 Score=456.27 Aligned_cols=571 Identities=19% Similarity=0.182 Sum_probs=413.2
Q ss_pred CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739 5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE 84 (628)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 84 (628)
+++++|++++|.+++ ..+..|+++++|++|++++|.+++..+..+.. +++|++|++++|.+.. ++...|.++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQ-LSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCC-CCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCc-cChhhhccCCCCC
Confidence 467888888888777 34456788888888888888887777777777 8888888888887764 4444678888888
Q ss_pred eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhh--cCCCC
Q 039739 85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLA--NMTSL 162 (628)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~--~l~~L 162 (628)
+|++++| .+.+..+..++. +++|++|++++|.+.. .++..+.++++|++|++++|.+.+..+..+. .+++|
T Consensus 101 ~L~L~~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 101 ELHLMSN--SIQKIKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp EEECCSS--CCCCCCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred EEECCCC--ccCccChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 8888887 444444456666 8888888888887744 4445677788888888888887765555544 45788
Q ss_pred CEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCC--CcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739 163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLE--PFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240 (628)
Q Consensus 163 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 240 (628)
++|++++|.+. .++...+..+++|+.+++.++.+....... .....++|+.|++++|.+.+..+..+. .....+|+
T Consensus 174 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~ 251 (680)
T 1ziw_A 174 KKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLT 251 (680)
T ss_dssp SEEECTTCCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCC
T ss_pred cEEECCCCccc-ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCC
Confidence 88888888777 344436777888888888777654211000 001236788888888877665443322 22223588
Q ss_pred eeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCC---------CCcccccCC
Q 039739 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP---------FQLPIHSHK 311 (628)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~l~~~~ 311 (628)
+|++ ..+......+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++++..... ....+..++
T Consensus 252 ~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 252 MLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp EEEC-TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred EEEC-CCCCcCccCcccccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 8888 6666666667778888888888888888775555554 6788888888877644321 112566788
Q ss_pred ccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCc-c-cccccC--CCCccEEECcCCcccCccchhhhcCCccc
Q 039739 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS-I-PSSFGN--MKFLQILDLSNNHLTGEIPEHLVVGCVNL 387 (628)
Q Consensus 312 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 387 (628)
+|++|++++|.+.+..+..+. .+++|+.|++++|.+... + ...+.. .++|+.|++++|++. .++...+..+++|
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L 407 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHL 407 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred CCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eEChhhhhCCCCC
Confidence 888888888888754444444 378888888888865422 1 112222 257888888888887 4444556668888
Q ss_pred cEEEccCCccCCccc-ccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC--CccCccccCCCCcceEEC
Q 039739 388 ESLALSNNSLEGHMF-SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS--GKIPRWLGNLTRLQHIMM 464 (628)
Q Consensus 388 ~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l 464 (628)
+.|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+.++++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 888888888765433 56778888888888888887777778888888888888888775 456778888888999999
Q ss_pred CCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC---------CCCCCcccEEecCCCcCcCCCCccccccCCCccEEE
Q 039739 465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS---------CFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLD 535 (628)
Q Consensus 465 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 535 (628)
++|.+.+..+..+..+++|++|++++|+++...+. ...+++|+.|++++|++. .++..++.++++|+.|+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID 566 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence 99888877777788888999999998888753221 223678888999988886 67766688888999999
Q ss_pred CCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcccc-CCCCCcEEECCCCcccccc
Q 039739 536 LSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSI 593 (628)
Q Consensus 536 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~l~~~~~~~~i 593 (628)
+++|++++.++..|..+++|+.|++++|++++..++.+. .+++|+.|++++|++...-
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999888877777788888899999999988866666666 6788889999988887543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.1e-52 Score=453.99 Aligned_cols=573 Identities=20% Similarity=0.179 Sum_probs=473.0
Q ss_pred CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739 7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL 86 (628)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 86 (628)
-+.++++++.++. +|..+. +++++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|
T Consensus 6 ~~~~~cs~~~L~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 78 (680)
T 1ziw_A 6 HEVADCSHLKLTQ---VPDDLP--TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPE-LCQKLPMLKVL 78 (680)
T ss_dssp SSEEECCSSCCSS---CCSCSC--TTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCTT-HHHHCTTCCEE
T ss_pred CCeeECCCCCccc---cccccC--CCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccCccCHH-HHhcccCcCEE
Confidence 4678999988877 454443 78999999999999877778888 99999999999998866554 78999999999
Q ss_pred ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEE
Q 039739 87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILD 166 (628)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 166 (628)
++++| .+.......++. +++|++|++++|.+.. +++..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 79 ~L~~n--~l~~l~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 79 NLQHN--ELSQLSDKTFAF-CTNLTELHLMSNSIQK----IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp ECCSS--CCCCCCTTTTTT-CTTCSEEECCSSCCCC----CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred ECCCC--ccCccChhhhcc-CCCCCEEECCCCccCc----cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 99999 555444446777 9999999999999866 7767899999999999999999988888899999999999
Q ss_pred ccccccccccCCCCC--CCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeec
Q 039739 167 VSSNQLTGSISSSPL--VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL 244 (628)
Q Consensus 167 l~~~~~~~~l~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 244 (628)
+++|.+.+ ++...+ ..+++|++|++++|.+.+ .....+..+.+|+.+++.++.+...............+++.|.+
T Consensus 152 L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 152 LSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp CCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred ccCCcccc-cCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 99999873 333233 356899999999998874 45567888999999999988776543333222234468999999
Q ss_pred cCCCCCCcccccccccCCC--ccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCc
Q 039739 245 SSGYGDGFIFPKFLYHQHD--LEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322 (628)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 322 (628)
..+...+..+.++..++. |+.|++++|.+.+..+..+ ..+++|++|+++++.+.+..+..+..+++|+.|+++++.
T Consensus 230 -~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 230 -SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp -TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred -cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 677777777888877754 9999999999886555554 789999999999999988888889999999999999875
Q ss_pred CCcc-----cc---hhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccC-ccchhhhcC--CccccEEE
Q 039739 323 FRGH-----IP---VEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTG-EIPEHLVVG--CVNLESLA 391 (628)
Q Consensus 323 i~~~-----~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~--~~~L~~L~ 391 (628)
..+. +| ......+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. .++...+.. .++|+.|+
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~ 387 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence 4432 22 2223348899999999999998888889999999999999987432 333333322 36899999
Q ss_pred ccCCccCCcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCC
Q 039739 392 LSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE 470 (628)
Q Consensus 392 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 470 (628)
+++|.+.+..+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 99999998878888899999999999999986555 68889999999999999998888889999999999999999886
Q ss_pred --CCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCC-------CccccccCCCccEEECCCcc
Q 039739 471 --GPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQL-------KRGTFFNSYSLVTLDLSYNR 540 (628)
Q Consensus 471 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~-------~~~~~~~~~~L~~L~l~~~~ 540 (628)
+..|..+..+++|+.|++++|++++..+..+. +++|+.|++++|++.+.. +...+..+++|+.|++++|+
T Consensus 468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 46788899999999999999999977776654 899999999999986431 11237889999999999999
Q ss_pred cCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccc
Q 039739 541 LNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL 597 (628)
Q Consensus 541 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~ 597 (628)
++..++..|..+++|+.|++++|+++...+..|.++++|+.|++++|++++..|..+
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 996666779999999999999999996556668899999999999999996555533
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-50 Score=431.83 Aligned_cols=540 Identities=19% Similarity=0.168 Sum_probs=407.4
Q ss_pred CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739 7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL 86 (628)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 86 (628)
-+++++++..++. +|..+. +++++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|
T Consensus 14 ~~~~~c~~~~l~~---iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 86 (606)
T 3t6q_A 14 NKTYNCENLGLNE---IPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHED-TFQSQHRLDTL 86 (606)
T ss_dssp TTEEECTTSCCSS---CCTTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred CceEECCCCCccc---CcCCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChh-hccCccccCee
Confidence 3467777776665 444444 36888888888888766777877 88888888888887755444 78888888888
Q ss_pred ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEE
Q 039739 87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILD 166 (628)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 166 (628)
++++| .+.+..+..++. +++|++|++++|.+.. +.+..+.++++|++|++++|.+.+.....+..+++|++|+
T Consensus 87 ~Ls~n--~l~~~~~~~~~~-l~~L~~L~L~~n~i~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 87 VLTAN--PLIFMAETALSG-PKALKHLFFIQTGISS----IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp ECTTC--CCSEECTTTTSS-CTTCCEEECTTSCCSC----GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred eCCCC--cccccChhhhcc-cccccEeeccccCccc----CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence 88888 556666667777 8888888888888765 5445678888888888888888754334444488888888
Q ss_pred ccccccccccCCCCCCCCCccc--EEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeec
Q 039739 167 VSSNQLTGSISSSPLVHLTSIE--ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL 244 (628)
Q Consensus 167 l~~~~~~~~l~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 244 (628)
+++|.+. .++...++.+++|+ .|++++|.+....+ .. .....|+.++++++........ ......++.+.+
T Consensus 160 L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~ 232 (606)
T 3t6q_A 160 FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GA-FDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWL 232 (606)
T ss_dssp CCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECT-TT-TTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEEC
T ss_pred cccCccc-ccChhhhhhhcccceeEEecCCCccCccCh-hH-hhhccccccccCCchhHHHHhh----hccccchhheec
Confidence 8888877 34333577777787 78888887764332 22 2335677777776642111000 011112222222
Q ss_pred cCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCc--cCcEEEeecCCCCCCCCcccccCCccCEEEccCCc
Q 039739 245 SSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322 (628)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 322 (628)
. .+..+... .++...+..+. +|+.|+++++.+.+..+..+..+++|++|++++|.
T Consensus 233 ~--------------~~~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 233 G--------------TFEDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp C--------------CCTTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred h--------------hhcccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 0 00111110 11222223332 67888888888887777778888999999999998
Q ss_pred CCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcc-
Q 039739 323 FRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHM- 401 (628)
Q Consensus 323 i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~- 401 (628)
+. .+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+...++...+..+++|++|++++|.+.+..
T Consensus 290 l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 87 77777654 7899999999999887777788889999999999998876777766777899999999999887654
Q ss_pred -cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccC
Q 039739 402 -FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479 (628)
Q Consensus 402 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 479 (628)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 447 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence 5567789999999999999887778888999999999999998876554 34888999999999999998888888999
Q ss_pred CCCCCEEEccCCcCcCCC-C--CCC-CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCC
Q 039739 480 LDWLQILDISDNNISGSL-P--SCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL 555 (628)
Q Consensus 480 l~~L~~L~l~~~~~~~~~-~--~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 555 (628)
+++|++|++++|++.+.. + ..+ .+++|+.|++++|++.+..+.. +..+++|+.|++++|++++..|+.+..+++|
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hccccCCCEEECCCCccCcCChhHhCccccc
Confidence 999999999999987521 1 222 3789999999999997555544 8999999999999999999999999999999
Q ss_pred cEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739 556 SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 556 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip 594 (628)
.|++++|++++..|+.+..+++|++|++++|++....+
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999998888889999999999999999986444
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-48 Score=419.63 Aligned_cols=520 Identities=18% Similarity=0.151 Sum_probs=407.5
Q ss_pred CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739 5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE 84 (628)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 84 (628)
+++++|++++|.+++ ..+..|+++++|++|++++|.+.+..+..|.. +++|++|++++|.+....+. .|.++++|+
T Consensus 33 ~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~ 108 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAET-ALSGPKALK 108 (606)
T ss_dssp TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTT-TTSSCTTCC
T ss_pred CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChh-hhccccccc
Confidence 469999999999988 45678999999999999999999887888998 99999999999998866554 899999999
Q ss_pred eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCC-
Q 039739 85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLR- 163 (628)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~- 163 (628)
+|++++| .+.+..+..++. +++|++|++++|.+.. +....+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 109 ~L~L~~n--~i~~l~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 109 HLFFIQT--GISSIDFIPLHN-QKTLESLYLGSNHISS----IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp EEECTTS--CCSCGGGSCCTT-CTTCCEEECCSSCCCC----CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred Eeecccc--CcccCCcchhcc-CCcccEEECCCCcccc----cCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 9999999 555555566777 9999999999999855 4333556699999999999999988888999999999
Q ss_pred -EEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceee
Q 039739 164 -ILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL 242 (628)
Q Consensus 164 -~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 242 (628)
+|++++|.+.+ ++... ....+|++|++++|.... ..+..+..+....+....+.. +.
T Consensus 182 l~L~l~~n~l~~-~~~~~-~~~~~L~~L~l~~~~~~~----~~~~~l~~~~l~~l~~~~~~~--------------~~-- 239 (606)
T 3t6q_A 182 LSLNLNGNDIAG-IEPGA-FDSAVFQSLNFGGTQNLL----VIFKGLKNSTIQSLWLGTFED--------------MD-- 239 (606)
T ss_dssp EEEECTTCCCCE-ECTTT-TTTCEEEEEECTTCSCHH----HHHHHTTTCEEEEEECCCCTT--------------SC--
T ss_pred eEEecCCCccCc-cChhH-hhhccccccccCCchhHH----HHhhhccccchhheechhhcc--------------cc--
Confidence 99999999984 44424 445789999999886221 122333333332222111111 00
Q ss_pred eccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCc
Q 039739 243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322 (628)
Q Consensus 243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 322 (628)
...........+.. ..|+.++++++.+.+. +...+..+++|++|+++++.++ ..+..+..+++|++|++++|.
T Consensus 240 ----~~~i~~~~~~~l~~-~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 240 ----DEDISPAVFEGLCE-MSVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp ----CCCCCGGGGGGGGG-SEEEEEECTTCCCSSC-CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred ----ccccChhHhchhhc-CceeEEEeecCccCcc-CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 00111111112222 2688888888887744 4343478888899999888877 455667888999999999998
Q ss_pred CCcccchhhhhhCCCccEEEcccccCCCcccc-cccCCCCccEEECcCCcccCccc--hhhhcCCccccEEEccCCccCC
Q 039739 323 FRGHIPVEIGDVLPSLFSLNISMNALDGSIPS-SFGNMKFLQILDLSNNHLTGEIP--EHLVVGCVNLESLALSNNSLEG 399 (628)
Q Consensus 323 i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~ 399 (628)
+.+..+..+.. +++|+.|++++|.+.+.++. .+..+++|+.|++++|.+. ... ...+..+++|++|++++|.+.+
T Consensus 313 l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 313 FENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred cCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCc
Confidence 88554555544 88999999999988755544 4888999999999999887 333 3345568999999999998887
Q ss_pred cccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC---Ccc
Q 039739 400 HMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP---IPV 475 (628)
Q Consensus 400 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~ 475 (628)
..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. .+.
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence 777788889999999999998876654 4478899999999999999878888889999999999999988752 235
Q ss_pred cccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCC
Q 039739 476 EFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554 (628)
Q Consensus 476 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 554 (628)
.+..+++|+.|++++|++++..+..+. +++|+.|++++|++++..+.. +..+++| .|++++|++++.+|..+..+++
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred hhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCcccccCHhhcccCCC
Confidence 588899999999999999877776665 889999999999997665555 8899999 9999999999888999999999
Q ss_pred CcEEECCCCcCCcc
Q 039739 555 LSHLILGHNNLEGE 568 (628)
Q Consensus 555 L~~L~l~~~~i~~~ 568 (628)
|+.|++++|++...
T Consensus 549 L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 549 QRTINLRQNPLDCT 562 (606)
T ss_dssp SSEEECTTCCEECS
T ss_pred CCEEeCCCCCcccc
Confidence 99999999999854
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-48 Score=419.90 Aligned_cols=531 Identities=20% Similarity=0.212 Sum_probs=373.3
Q ss_pred CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739 7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL 86 (628)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 86 (628)
-++++++++.++. +|..+. +++++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|
T Consensus 13 ~~~~~c~~~~l~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L 85 (606)
T 3vq2_A 13 NITYQCMDQKLSK---VPDDIP--SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDK-AWHGLHHLSNL 85 (606)
T ss_dssp TTEEECTTSCCSS---CCTTSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred CCceEccCCCccc---CCCCCC--CCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHH-HhhchhhcCEe
Confidence 4678888888877 444443 78999999999998777778888 99999999999988865454 78999999999
Q ss_pred ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCEE
Q 039739 87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRIL 165 (628)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L 165 (628)
++++| .+.+..+..++. +++|++|++++|.+.. +++..++++++|++|++++|.+.+ .+|..+..+++|++|
T Consensus 86 ~Ls~n--~l~~~~p~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 86 ILTGN--PIQSFSPGSFSG-LTSLENLVAVETKLAS----LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp ECTTC--CCCCCCTTSSTT-CTTCCEEECTTSCCCC----SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred ECCCC--cccccChhhcCC-cccCCEEEccCCcccc----ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 99999 666666788888 9999999999998866 665679999999999999999875 568899999999999
Q ss_pred EccccccccccCCCCCCCCCccc----EEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee
Q 039739 166 DVSSNQLTGSISSSPLVHLTSIE----ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241 (628)
Q Consensus 166 ~l~~~~~~~~l~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 241 (628)
++++|.+. .++...++.+++|+ ++++++|.+.. ++...+... +|+++++++|.+.+..
T Consensus 159 ~Ls~n~l~-~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~-~L~~L~L~~n~~~~~~--------------- 220 (606)
T 3vq2_A 159 DLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGI-KLHELTLRGNFNSSNI--------------- 220 (606)
T ss_dssp ECCSSCCC-EECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCHHH---------------
T ss_pred EccCCcce-ecChhhhhhhhccccccceeeccCCCcce-eCcccccCc-eeeeeeccCCccchhH---------------
Confidence 99999988 45444677776665 79999998873 344444444 7888888887664321
Q ss_pred eeccCCCCCCcccccccccCCCccEEEccCCcccC-----cCchhHHhcCc--cCcEEEe-ecCCCCCCCCcccccCCcc
Q 039739 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-----EFPTWLLENNT--KLRQLSL-VNDSLGGPFQLPIHSHKRL 313 (628)
Q Consensus 242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~l~~~~~L 313 (628)
.|..+..++.++.+++....+.. ......+..+. .++.+.+ ..+.+.+..+. +..+++|
T Consensus 221 ------------~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L 287 (606)
T 3vq2_A 221 ------------MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANV 287 (606)
T ss_dssp ------------HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTC
T ss_pred ------------HHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCC
Confidence 22233333344433332111110 01111111221 2344444 23333333333 5566666
Q ss_pred CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS 393 (628)
Q Consensus 314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 393 (628)
+.++++++.+. .++ .+.. +++|+.|++++|.+ +.+| .+ .+++|+.|++++|...... .+..+++|++|+++
T Consensus 288 ~~L~l~~~~~~-~l~-~l~~-~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 288 SAMSLAGVSIK-YLE-DVPK-HFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLS 358 (606)
T ss_dssp SEEEEESCCCC-CCC-CCCT-TCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECC
T ss_pred CEEEecCccch-hhh-hccc-cccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---hhccCCCCCEEECc
Confidence 66666666664 444 3332 56677777777766 3555 33 6677777777776443222 23346777777777
Q ss_pred CCccCCcc--cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCC
Q 039739 394 NNSLEGHM--FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLE 470 (628)
Q Consensus 394 ~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 470 (628)
+|.+++.. +..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 77665432 445556777777777777766 345666777777777777777765555 56677777777777777777
Q ss_pred CCCcccccCCCCCCEEEccCCcCcCC-CCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739 471 GPIPVEFCQLDWLQILDISDNNISGS-LPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW 548 (628)
Q Consensus 471 ~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 548 (628)
+..|..+..+++|+.|++++|++.+. .+..+. +++|+.|++++|++++..+.. +..+++|+.|++++|++++.+|..
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGG
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh-hcccccCCEEECCCCcCCCcCHHH
Confidence 66677777777777777777777652 454443 677778888888776544444 888999999999999999888999
Q ss_pred hcCCCCCcEEECCCCcCCccCCccccCCC-CCcEEECCCCccccccc
Q 039739 549 VDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 549 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~~~~ip 594 (628)
+..+++|+.|++++|+++ .+|..+..++ +|++|++++|++....|
T Consensus 517 ~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999 7888898887 69999999999985443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-47 Score=411.70 Aligned_cols=519 Identities=20% Similarity=0.184 Sum_probs=408.3
Q ss_pred CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739 5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE 84 (628)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 84 (628)
++|++|++++|.+++ ..+..|+++++|++|++++|.+++..+..+.. +++|++|++++|.+....|. .|.++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPG-SFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTT-SSTTCTTCC
T ss_pred CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccChh-hcCCcccCC
Confidence 579999999999988 44567999999999999999999877888888 99999999999998866564 899999999
Q ss_pred eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCC-
Q 039739 85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLR- 163 (628)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~- 163 (628)
+|++++| .+.+..+..+++ +++|++|++++|.+.. ..++ ..+.++++|++|++++|.+.+..+..+..+++|+
T Consensus 108 ~L~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 108 NLVAVET--KLASLESFPIGQ-LITLKKLNVAHNFIHS--CKLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp EEECTTS--CCCCSSSSCCTT-CTTCCEEECCSSCCCC--CCCC-GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred EEEccCC--ccccccccccCC-CCCCCEEeCCCCcccc--eech-HhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 9999999 555555566777 9999999999998832 1144 5899999999999999999987777777666554
Q ss_pred ---EEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739 164 ---ILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240 (628)
Q Consensus 164 ---~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 240 (628)
+|++++|.+. .++...+... +|++|++++|.+.+......+..++.++.+++..+.+..... +.
T Consensus 182 ~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-----------l~ 248 (606)
T 3vq2_A 182 VNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-----------LE 248 (606)
T ss_dssp CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-----------CS
T ss_pred ccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc-----------cc
Confidence 8999999998 6776455544 999999999987644444557788888888876543322100 00
Q ss_pred eeeccCCCCCCcccccccccCCCccEEEc-cCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEcc
Q 039739 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDL-SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDIS 319 (628)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 319 (628)
......+..+... .++.+.+ ..+.+.+..+. +..+++|+.|+++++.+.... .+..+++|++|+++
T Consensus 249 --------~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 249 --------IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSII 315 (606)
T ss_dssp --------CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEE
T ss_pred --------ccChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcc
Confidence 0011111222222 4666666 45556655555 467888888888888876533 67788899999999
Q ss_pred CCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCcc-chhhhcCCccccEEEccCCccC
Q 039739 320 NNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI-PEHLVVGCVNLESLALSNNSLE 398 (628)
Q Consensus 320 ~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~ 398 (628)
+|.+ +.+|. + .+++|+.|++++|...+.. .+..+++|+.|++++|.+.... ....+..+++|++|++++|.+.
T Consensus 316 ~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 316 RCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp SCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred cccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 9988 47774 3 4889999999998655333 5678899999999999876321 1233556899999999999876
Q ss_pred CcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCC-CCccc
Q 039739 399 GHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPVE 476 (628)
Q Consensus 399 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~ 476 (628)
.. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..
T Consensus 390 ~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 390 IM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp EE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred cc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence 53 3677788999999999999887766 678889999999999999988888889999999999999999886 36778
Q ss_pred ccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCC-C
Q 039739 477 FCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS-Q 554 (628)
Q Consensus 477 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~ 554 (628)
+..+++|++|++++|++++..+..+. +++|+.|++++|++++..+.. +..+++|+.|++++|+++ .+|..+..++ +
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~ 546 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIE-TSKGILQHFPKS 546 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEECTTSCCC-CEESCGGGSCTT
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEECCCCcCc-ccCHhHhhhccc
Confidence 89999999999999999887777654 889999999999997655555 889999999999999998 5666688887 5
Q ss_pred CcEEECCCCcCCcc
Q 039739 555 LSHLILGHNNLEGE 568 (628)
Q Consensus 555 L~~L~l~~~~i~~~ 568 (628)
|+.|++++|++...
T Consensus 547 L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 547 LAFFNLTNNSVACI 560 (606)
T ss_dssp CCEEECCSCCCCCS
T ss_pred CcEEEccCCCcccC
Confidence 99999999999843
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-44 Score=385.32 Aligned_cols=516 Identities=22% Similarity=0.210 Sum_probs=377.4
Q ss_pred CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739 7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL 86 (628)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 86 (628)
.+.++.++..++. +|..+. +++++|++++|.+++.....+.. +++|++|++++|.+....+ ..|.++++|++|
T Consensus 9 ~~~~~c~~~~l~~---ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L 81 (570)
T 2z63_A 9 NITYQCMELNFYK---IPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIED-GAYQSLSHLSTL 81 (570)
T ss_dssp TTEEECCSSCCSS---CCSSSC--SSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred CcEEEeCCCCccc---cCCCcc--ccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCCccCc-ccccCchhCCEE
Confidence 4567787776766 444333 57999999999998777778888 9999999999998875444 479999999999
Q ss_pred ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCEE
Q 039739 87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRIL 165 (628)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L 165 (628)
++++| .+.+..+..+.. +++|++|++++|.+.. ++...+.++++|++|++++|.+.. .+|..+..+++|++|
T Consensus 82 ~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 82 ILTGN--PIQSLALGAFSG-LSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp ECTTC--CCCEECTTTTTT-CTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred eCcCC--cCCccCHhhhcC-cccccccccccccccc----CCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 99998 565555667777 9999999999998866 665568899999999999999886 468899999999999
Q ss_pred EccccccccccCCCCCCCCCcc----cEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee
Q 039739 166 DVSSNQLTGSISSSPLVHLTSI----EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241 (628)
Q Consensus 166 ~l~~~~~~~~l~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 241 (628)
++++|.+. .++...++.+++| +.+++++|.+... +...+... +|+.+++++|...
T Consensus 155 ~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~-~~~~~~~~-~L~~L~l~~n~~~------------------ 213 (570)
T 2z63_A 155 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNFDS------------------ 213 (570)
T ss_dssp ECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTC-EEEEEEEESCCSC------------------
T ss_pred eCcCCccc-eecHHHccchhccchhhhhcccCCCCceec-CHHHhccC-cceeEeccccccc------------------
Confidence 99999987 4444367777777 7889998887643 33344433 5777776654321
Q ss_pred eeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCC--ccCEEEcc
Q 039739 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK--RLGMLDIS 319 (628)
Q Consensus 242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~ 319 (628)
...++..+..++.++...+....+.. ...++. + ....+..++ .++.+++.
T Consensus 214 ---------~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~~l~~--~--------~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 214 ---------LNVMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEK--F--------DKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp ---------TTHHHHHHHTTTTCEEEEEEEEECCC---------CSSCEE--C--------CTTTTGGGGGSEEEEEEEE
T ss_pred ---------ccchhhhhcCccccceeeeccccccC---------chhhhh--c--------chhhhccccccchhhhhhh
Confidence 11233344445555544443221110 000000 0 001111111 24555555
Q ss_pred CC-cCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccC
Q 039739 320 NN-NFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLE 398 (628)
Q Consensus 320 ~~-~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 398 (628)
++ .+.+..+..+.. +++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .++. ..+++|++|++++|.+.
T Consensus 266 ~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 266 YLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp ETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSC
T ss_pred cchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCccc
Confidence 55 444445555544 678888888888777 566667777 8888888888776 5554 24778888888888766
Q ss_pred CcccccccCCCCCcEEEccCccCcCcc--cccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCc-c
Q 039739 399 GHMFSRNFNLTNLRWLQLEGNHFVGEI--PQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP-V 475 (628)
Q Consensus 399 ~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 475 (628)
..... ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ .+.++++|++|++++|.+.+..+ .
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchh
Confidence 54333 56788888888888876443 5667788888888888888774444 38888888888888888876554 4
Q ss_pred cccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCc-CCCCccccccCCCccEEECCCcccCCccchhhcCCC
Q 039739 476 EFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLH-GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS 553 (628)
Q Consensus 476 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 553 (628)
.+..+++|++|++++|.+.+..+..+. +++|+.|++++|.+. +.+|.. +..+++|+.|++++|++++..|..+..++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCccccCChhhhhccc
Confidence 577888888888888888877776654 788888888888886 346654 88999999999999999988899999999
Q ss_pred CCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccc
Q 039739 554 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC 596 (628)
Q Consensus 554 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~ 596 (628)
+|+.|++++|++++..++.|.++++|++|++++|++.+..|..
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999999999777788999999999999999999887753
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=403.03 Aligned_cols=535 Identities=20% Similarity=0.195 Sum_probs=389.1
Q ss_pred CEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceee
Q 039739 8 NTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLD 87 (628)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 87 (628)
+..+.++++++. +|. -.+++++|+|++|.+++..+..+.. +++|++|++++|.....++...|.++++|++|+
T Consensus 7 ~~~dcs~~~L~~---vP~---lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQ---VPQ---VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSSC---CCS---SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCCC---CCC---CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 466777777777 343 3468999999999888777777888 899999999988666666556889999999999
Q ss_pred cccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccc-ccccCCCCCcEEEccCCcccccCc-hhhhcCCCCCEE
Q 039739 88 MEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRIL 165 (628)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L 165 (628)
+++| .+.+..+..+.. +++|++|++++|.+... ++. ..+.++++|++|++++|.+.+..+ ..|.++++|++|
T Consensus 80 Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~---~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 80 LGSS--KIYFLHPDAFQG-LFHLFELRLYFCGLSDA---VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CTTC--CCCEECTTSSCS-CSSCCCEECTTCCCSSC---CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCC--cCcccCHhHccC-CcccCEeeCcCCCCCcc---cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 9998 666666777887 99999999999888320 222 248889999999999998876544 578889999999
Q ss_pred EccccccccccCCCCCCCC--CcccEEEcccCeeeeecCCCCcCCCC------cccEEeccCCcccccccccccCccCcc
Q 039739 166 DVSSNQLTGSISSSPLVHL--TSIEELYLSNNHFQIPISLEPFFNHS------RLKSFYADNNEINAEITQSHSLTAPNF 237 (628)
Q Consensus 166 ~l~~~~~~~~l~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~~~ 237 (628)
++++|.+.+..+. .+..+ ++|+.|+++.|.+....+. .+..+. .|+.|++++|.+.+..+..........
T Consensus 154 ~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 154 DFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred ECCCCcCCeeCHH-HcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 9999988744444 56666 7899999998887754332 233333 388888888877666555544444444
Q ss_pred cceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhc--CccCcEEEeecCCCCCCCCcccccCCccCE
Q 039739 238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN--NTKLRQLSLVNDSLGGPFQLPIHSHKRLGM 315 (628)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 315 (628)
++..+.+. ...... .+..+.+.+.....+ .. .++|+.|+++++.+.+..+..+..+++|+.
T Consensus 232 ~l~~L~l~-~~~~~~---------------~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 232 QAFSLILA-HHIMGA---------------GFGFHNIKDPDQNTF-AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CBSEEECC-SSCCBC---------------SSSCSSSTTGGGTTT-TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred cccceecc-cccccc---------------cccccccCCCChhhh-hccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 55555552 111100 001111111111111 22 367888888888877766677788888888
Q ss_pred EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCC
Q 039739 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395 (628)
Q Consensus 316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 395 (628)
|++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++...+.++++|+.|++++|
T Consensus 295 L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETC
T ss_pred EECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCC
Confidence 888888887555555544 788889999888888777778888889999999988886 666656677888999999988
Q ss_pred ccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCcc-CccccCCCCcceEECCCCcCCCCCc
Q 039739 396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKI-PRWLGNLTRLQHIMMPKNHLEGPIP 474 (628)
Q Consensus 396 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~ 474 (628)
.++.. ..+++|+.|++++|.+. .+|.. ..+++.|++++|.+.+.. +..+.++++|+.|++++|.+.+..+
T Consensus 373 ~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 373 ALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp CSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 87642 23788899999988887 44432 467888999998887532 2345678899999999998875443
Q ss_pred c-cccCCCCCCEEEccCCcCcCCC-----CCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch
Q 039739 475 V-EFCQLDWLQILDISDNNISGSL-----PSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD 547 (628)
Q Consensus 475 ~-~l~~l~~L~~L~l~~~~~~~~~-----~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 547 (628)
. .+..+++|+.|++++|.+.... +..+. +++|+.|++++|.+++ +++..+..+++|+.|++++|++++.++.
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-CCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc-cChhHccchhhhheeECCCCCCCccChh
Confidence 3 3566889999999999886332 22333 6888899999998874 4444488899999999999999877766
Q ss_pred hhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739 548 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 548 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 591 (628)
.+. ++|+.|++++|++++..|+.| .+|+.+++++|+...
T Consensus 523 ~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 523 DLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp CCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred hhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 665 789999999999997777665 478899999988874
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.1e-44 Score=396.75 Aligned_cols=513 Identities=21% Similarity=0.199 Sum_probs=385.2
Q ss_pred cEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcch-hhhhhccCCCccE
Q 039739 34 EYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSF-LQIIGESMPSLKY 112 (628)
Q Consensus 34 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~ 112 (628)
+..+.++++++. .|. ..+++++|++++|.+....+. .|.++++|++|++++| .....+ +..+.+ +++|++
T Consensus 7 ~~~dcs~~~L~~-vP~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n--~~~~~i~~~~f~~-L~~L~~ 77 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQ--YTPLTIDKEAFRN-LPNLRI 77 (844)
T ss_dssp EEEEESCCCSSC-CCS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTT--CCCCEECTTTTSS-CTTCCE
T ss_pred eEEEccCCCCCC-CCC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCC--CCccccCHHHhcC-CCCCCE
Confidence 456777777663 243 267889999998888755454 7888888888888887 344444 556666 888888
Q ss_pred EeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchh--hhcCCCCCEEEccccccccccCCCCCCCCCcccEE
Q 039739 113 LSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC--LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190 (628)
Q Consensus 113 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L 190 (628)
|++++|.+.. +.+..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+...+.++++|++|
T Consensus 78 L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 78 LDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp EECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred EECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 8888887755 55567888888888888888887655544 77888888888888887643333357788888888
Q ss_pred EcccCeeeeecCCCCcCCC--CcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCC------
Q 039739 191 YLSNNHFQIPISLEPFFNH--SRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH------ 262 (628)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------ 262 (628)
++++|.+... ....+..+ ++|+.|+++.|.+.+.. +..+..++
T Consensus 154 ~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~----------------------------~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 154 DFSSNQIFLV-CEHELEPLQGKTLSFFSLAANSLYSRV----------------------------SVDWGKCMNPFRNM 204 (844)
T ss_dssp EEESSCCCCC-CSGGGHHHHHCSSCCCEECCSBSCCCC----------------------------CCCCCSSSCTTTTC
T ss_pred ECCCCcCCee-CHHHcccccCCccceEECCCCcccccc----------------------------ccchhhcCCccccC
Confidence 8888877532 22344444 66777777776654432 22222222
Q ss_pred CccEEEccCCcccCcCchhHHhcC--ccCcEEEeecCCC---------CCCCCccccc--CCccCEEEccCCcCCcccch
Q 039739 263 DLEYVDLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSL---------GGPFQLPIHS--HKRLGMLDISNNNFRGHIPV 329 (628)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~---------~~~~~~~l~~--~~~L~~L~l~~~~i~~~~~~ 329 (628)
.|+.|++++|.+....+..+.... ..++.+.+..+.. .+.....+.. .++|+.|++++|.+.+..+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 478888888877666665554332 4566777653322 1111222333 37899999999998855555
Q ss_pred hhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCC
Q 039739 330 EIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLT 409 (628)
Q Consensus 330 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 409 (628)
.+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+....+..+++|+.|++++|.+.......+..++
T Consensus 285 ~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 554 4899999999999999888888999999999999999997 55555566799999999999999887777888999
Q ss_pred CCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCc-ccccCCCCCCEEEc
Q 039739 410 NLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDI 488 (628)
Q Consensus 410 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 488 (628)
+|++|++++|.+++ +..+++|+.|++++|.+. .++.. ..+++.|++++|.+.+... ..+..+++|+.|++
T Consensus 363 ~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 363 KLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 99999999998873 233789999999999987 44432 5789999999999986433 23568999999999
Q ss_pred cCCcCcCCCCC--CCCCCcccEEecCCCcCcCC----CCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCC
Q 039739 489 SDNNISGSLPS--CFHPLSVEQVHLSKNMLHGQ----LKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562 (628)
Q Consensus 489 ~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 562 (628)
++|++.+..+. ....++|+.|++++|.+... .....+..+++|+.|+|++|++++.++..|..+++|+.|+|++
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 99999865443 22378999999999998632 2233478899999999999999998999999999999999999
Q ss_pred CcCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739 563 NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601 (628)
Q Consensus 563 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~ 601 (628)
|++++..+..+. ++|+.|++++|++++.+|+.+.+++
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence 999965555555 8999999999999999999887766
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-43 Score=377.18 Aligned_cols=496 Identities=20% Similarity=0.219 Sum_probs=305.7
Q ss_pred CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739 5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE 84 (628)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 84 (628)
+++++|++++|.++++ .+..|..+++|++|++++|.+++..+..+.. +++|++|++++|.+....+ ..|.++++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLAL-GAFSGLSSLQ 103 (570)
T ss_dssp SSCCEEECCSCCCCEE--CTTTTTTCSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECT-TTTTTCTTCC
T ss_pred ccccEEEccCCccCcc--ChhHhhCCCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCCccCH-hhhcCccccc
Confidence 4699999999999883 4567999999999999999998776778888 9999999999999876544 4899999999
Q ss_pred eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCC--
Q 039739 85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSL-- 162 (628)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L-- 162 (628)
+|+++++ .+.......++. +++|++|++++|.+.. +.+| ..+.++++|++|++++|.+....+..+..+++|
T Consensus 104 ~L~L~~n--~l~~l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 104 KLVAVET--NLASLENFPIGH-LKTLKELNVAHNLIQS--FKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp EEECTTS--CCCCSTTCSCTT-CTTCCEEECCSSCCCC--CCCC-GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccc--ccccCCCccccc-cccccEEecCCCccce--ecCh-hhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 9999999 444433334777 9999999999998843 1134 589999999999999999998778888888888
Q ss_pred --CEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739 163 --RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240 (628)
Q Consensus 163 --~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 240 (628)
+++++++|.+. .++...+..+ +|+.|++++|..........+..+..++...+....+... ..++
T Consensus 178 ~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-----------~~l~ 244 (570)
T 2z63_A 178 LNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-----------GNLE 244 (570)
T ss_dssp CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-----------SSCE
T ss_pred hhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-----------hhhh
Confidence 89999999998 4555466655 8999999988543211122344555555554432211100 0000
Q ss_pred eeeccCCCCCCcccccccccCC--CccEEEccCC-cccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEE
Q 039739 241 RLSLSSGYGDGFIFPKFLYHQH--DLEYVDLSHI-KMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD 317 (628)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 317 (628)
.+. ...+..+. .++.+++.++ .+.+..+..+ ..+++|++|+++++.+.. .+..+..+ +|++|+
T Consensus 245 ~~~-----------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 245 KFD-----------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLE 310 (570)
T ss_dssp ECC-----------TTTTGGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEE
T ss_pred hcc-----------hhhhccccccchhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEe
Confidence 000 00111111 2344444444 3333333332 344555555555554432 22333333 555555
Q ss_pred ccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCcc
Q 039739 318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397 (628)
Q Consensus 318 l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 397 (628)
+++|.+. .+|.. .+++|+.|++.+|.+.+..+. ..+++|+.|++++ |.+
T Consensus 311 l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~-------------------------n~l 359 (570)
T 2z63_A 311 LVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR-------------------------NGL 359 (570)
T ss_dssp EESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS-------------------------SCC
T ss_pred eccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcC-------------------------Ccc
Confidence 5555444 33331 234455555554444432221 3344444444444 444
Q ss_pred CCcc--cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCc
Q 039739 398 EGHM--FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIP 474 (628)
Q Consensus 398 ~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 474 (628)
+... +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred CccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 3321 2233344555555555554442222 24455555555555555443322 344555555555555555554455
Q ss_pred ccccCCCCCCEEEccCCcCc-CCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCC
Q 039739 475 VEFCQLDWLQILDISDNNIS-GSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGL 552 (628)
Q Consensus 475 ~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 552 (628)
..+..+++|++|++++|.+. +..|..+. +++|+.|++++|++.+..+.. +..+++|+.|++++|++++.++..+..+
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh-hhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 55555555555555555554 23333332 555666666666664444444 7788899999999999988877888899
Q ss_pred CCCcEEECCCCcCCccCC
Q 039739 553 SQLSHLILGHNNLEGEVP 570 (628)
Q Consensus 553 ~~L~~L~l~~~~i~~~~~ 570 (628)
++|+.|++++|++++..|
T Consensus 518 ~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred cCCcEEEecCCcccCCCc
Confidence 999999999999886544
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-42 Score=368.17 Aligned_cols=467 Identities=18% Similarity=0.176 Sum_probs=332.8
Q ss_pred CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCC
Q 039739 81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMT 160 (628)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 160 (628)
++|++|++++| .+.+..+..+.. +++|++|++++|.+.. +++..|.++++|++|++++|.+.+..+..+..++
T Consensus 26 ~~L~~L~Ls~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFN--KITYIGHGDLRA-CANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSS--CCCEECSSTTSS-CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCC--ccCccChhhhhc-CCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 45566666655 344433444555 6666666666665544 4445566666666666666666655555566666
Q ss_pred CCCEEEcccccccc-ccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccc
Q 039739 161 SLRILDVSSNQLTG-SISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239 (628)
Q Consensus 161 ~L~~L~l~~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 239 (628)
+|++|++++|.+.+ ..+. .+..+++|++|++++|...+.++...+..+++|++|++++|.+.+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------------- 162 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--------------- 162 (549)
T ss_dssp TCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---------------
T ss_pred CCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---------------
Confidence 66666666666652 1223 466666667777666664334444556666666666666554432
Q ss_pred eeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCC---CcccccCCccCEE
Q 039739 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF---QLPIHSHKRLGML 316 (628)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L 316 (628)
..|..+..+++|++|+++.+... ..+..++..+++|++|+++++.+.+.. ......++.|+.|
T Consensus 163 -------------~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 163 -------------YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp -------------ECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred -------------cChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 13344556677777777777664 556666667888888888888877632 1223457889999
Q ss_pred EccCCcCCcccchhhh---hhCCCccEEEcccccCCCc------ccccccCCCCccEEECcCCcccCccc----hhhhcC
Q 039739 317 DISNNNFRGHIPVEIG---DVLPSLFSLNISMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIP----EHLVVG 383 (628)
Q Consensus 317 ~l~~~~i~~~~~~~~~---~~~~~L~~L~L~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 383 (628)
+++++.+.+..+..+. ..+++++.+++.+|.+.+. ....+..+++|+.+.+.++.+..... ..++..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 9999887755544433 2367899999999876542 12235677899999998887652211 111233
Q ss_pred CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc---ccccCCCcccEEEccCCcCCCccC--ccccCCCC
Q 039739 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP---QSLSKCFVLEGLFLNNNSLSGKIP--RWLGNLTR 458 (628)
Q Consensus 384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~ 458 (628)
.++|++|++++|.+.......+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 6789999999999875443344579999999999999986653 346788999999999999975432 45888999
Q ss_pred cceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCC
Q 039739 459 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY 538 (628)
Q Consensus 459 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 538 (628)
|++|++++|.+. ..|..+..+++|++|++++|++.. .+... +++|+.|++++|++++.. ..+++|+.|++++
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-PQTLEVLDVSNNNLDSFS-----LFLPRLQELYISR 460 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCS
T ss_pred CCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-cCCceEEECCCCChhhhc-----ccCChhcEEECCC
Confidence 999999999998 677788899999999999999874 33322 579999999999997532 4678999999999
Q ss_pred cccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739 539 NRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 539 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip 594 (628)
|+++ .+|. ...+++|+.|++++|++++..|+.+..+++|+.|++++|++.+..|
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9998 4555 4678999999999999998888889999999999999999998777
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-41 Score=360.23 Aligned_cols=496 Identities=18% Similarity=0.169 Sum_probs=337.9
Q ss_pred CCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcc
Q 039739 4 FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSL 83 (628)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 83 (628)
|+...+.+++++.++. +|..+. ++|++|++++|.+++..+..+.. +++|++|++++|.+....+ ..|.++++|
T Consensus 4 C~~~~~c~~~~~~l~~---ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L 76 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS---IPSGLT--AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEG-DAFYSLGSL 76 (549)
T ss_dssp ECTTSEEECTTSCCSS---CCSCCC--TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred CCCCceEECCCCcccc---ccccCC--CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccCh-hhccccccC
Confidence 4556677888888876 454443 78999999999998777778888 9999999999998886544 478999999
Q ss_pred ceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCc-hhhhcCCCC
Q 039739 84 EHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSL 162 (628)
Q Consensus 84 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L 162 (628)
++|++++| .+.+..+..++. +++|++|++++|.+.. ...+ ..+.++++|++|++++|...+.++ ..+..+++|
T Consensus 77 ~~L~Ls~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 77 EHLDLSDN--HLSSLSSSWFGP-LSSLKYLNLMGNPYQT--LGVT-SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp CEEECTTS--CCCSCCHHHHTT-CTTCCEEECTTCCCSS--SCSS-CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CEEECCCC--ccCccCHHHhcc-CCCCcEEECCCCcccc--cchh-hhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 99999999 666666666877 9999999999998843 0123 468889999999999998443444 678889999
Q ss_pred CEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceee
Q 039739 163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL 242 (628)
Q Consensus 163 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 242 (628)
++|++++|.+.+..+. .+..+++|++|+++++... ..+...+..+++|++|++++|.+.+....
T Consensus 151 ~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 214 (549)
T 2z81_A 151 NELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS-------------- 214 (549)
T ss_dssp EEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC--------------
T ss_pred CeeeccCCcccccChh-hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc--------------
Confidence 9999999998866666 7888999999999988754 22222234578888888888876432100
Q ss_pred eccCCCCCCcccccccccCCCccEEEccCCcccCcCchhH---HhcCccCcEEEeecCCCCCCC------CcccccCCcc
Q 039739 243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSLGGPF------QLPIHSHKRL 313 (628)
Q Consensus 243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------~~~l~~~~~L 313 (628)
.......++.|+.|+++++.+.+..+..+ +..+++|+.+++++|.+.+.. ...+..++++
T Consensus 215 -----------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 215 -----------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp -----------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred -----------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 00112346778888888887765544433 245677888888777654321 1123345555
Q ss_pred CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS 393 (628)
Q Consensus 314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 393 (628)
+.+++.++.+..... + ..++..+...++|+.|++++|.+. .+|..++.++++|++|+++
T Consensus 284 ~~L~l~~~~i~~~~~------~--------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 284 ETVTIRRLHIPQFYL------F--------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp CEEEEESCBCSCGGG------S--------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhh------c--------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 555555554331100 0 001111222345666666666654 5555554456666666666
Q ss_pred CCccCCccc---ccccCCCCCcEEEccCccCcCccc--ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739 394 NNSLEGHMF---SRNFNLTNLRWLQLEGNHFVGEIP--QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH 468 (628)
Q Consensus 394 ~~~l~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 468 (628)
+|.+.+..+ ..++.+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 666654332 224556677777777776654321 34666777777777777666 456666667777777777777
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739 469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW 548 (628)
Q Consensus 469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 548 (628)
+.. .+..+ .++|++|++++|++++.. ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++.++..
T Consensus 422 l~~-l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 422 IRV-VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp CSC-CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred ccc-ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHH
Confidence 663 22222 257788888888776532 24667888888888875 5665 356889999999999999888888
Q ss_pred hcCCCCCcEEECCCCcCCccCC
Q 039739 549 VDGLSQLSHLILGHNNLEGEVP 570 (628)
Q Consensus 549 ~~~l~~L~~L~l~~~~i~~~~~ 570 (628)
+..+++|+.|++++|++.+..|
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 9999999999999999886554
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-40 Score=349.20 Aligned_cols=456 Identities=17% Similarity=0.168 Sum_probs=300.5
Q ss_pred ceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCC
Q 039739 59 KNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHL 138 (628)
Q Consensus 59 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 138 (628)
++|+++++.++ .+|. .+. ++|++|++++| .+.+..+..+.. +++|++|++++|.+.. +.++.|.++++|
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n--~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQN--YISELWTSDILS-LSKLRILIISHNRIQY----LDISVFKFNQEL 71 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSS--CCCCCCHHHHTT-CTTCCEEECCSSCCCE----EEGGGGTTCTTC
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCC--cccccChhhccc-cccccEEecCCCccCC----cChHHhhcccCC
Confidence 57888888887 4554 343 78899999888 566666667777 8888888888888865 655678888888
Q ss_pred cEEEccCCcccccCchhhhcCCCCCEEEcccccccc-ccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcc--cEE
Q 039739 139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL--KSF 215 (628)
Q Consensus 139 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L 215 (628)
++|++++|.+. .+|.. .+++|++|++++|.+.+ .+|. .++.+++|++|++++|.+.. ..+..+++| +.+
T Consensus 72 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 72 EYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKV 143 (520)
T ss_dssp CEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEE
T ss_pred CEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEE
Confidence 88888888887 45555 78888888888888874 3444 68888888888888887753 345566666 888
Q ss_pred eccCCcc--cccccccccCccCcccceeeeccCCCCCCcccccccccCC-CccEEEccCCcccCcCchhHHhcCccCcEE
Q 039739 216 YADNNEI--NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLRQL 292 (628)
Q Consensus 216 ~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 292 (628)
++++|.+ .+. .|..+..+. ....++++++.+.+.++...+..+++|+.+
T Consensus 144 ~l~~n~l~~~~~----------------------------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 144 LLVLGETYGEKE----------------------------DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp EEEECTTTTSSC----------------------------CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred Eeeccccccccc----------------------------ccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 8877765 222 122222222 122345555555544454444556666666
Q ss_pred EeecCC-------CCCCCCcccccCCccCEEEccCCcCCcccchhhhh--hCCCccEEEcccccCCCcccccc-----cC
Q 039739 293 SLVNDS-------LGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGD--VLPSLFSLNISMNALDGSIPSSF-----GN 358 (628)
Q Consensus 293 ~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~-----~~ 358 (628)
++++|. +.+.. ..+..+++|+.|+++++.+.+..+..+.. ..++|+.|++++|.+.+.+|..+ ..
T Consensus 196 ~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274 (520)
T ss_dssp CEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred cccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence 666654 11111 14556677777777776665433322221 14578888888887777777766 67
Q ss_pred CCCccEEECcCCcccCccchhhhcCC---ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739 359 MKFLQILDLSNNHLTGEIPEHLVVGC---VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435 (628)
Q Consensus 359 ~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 435 (628)
+++|+.++++++.+ .+|...+..+ .+|+.|++++|.+.... ....+++|++|++++|.+.+..|..+..+++|
T Consensus 275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 350 (520)
T 2z7x_B 275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350 (520)
T ss_dssp CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence 77777777777766 4442211112 45777777777665422 12456677777777777766566666666777
Q ss_pred cEEEccCCcCCC--ccCccccCCCCcceEECCCCcCCCCCcc-cccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739 436 EGLFLNNNSLSG--KIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512 (628)
Q Consensus 436 ~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 512 (628)
++|++++|.+.+ ..+..+..+++|++|++++|.+.+..|. .+..+++|+.|++++|+++
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~------------------ 412 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT------------------ 412 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC------------------
T ss_pred CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC------------------
Confidence 777777776654 3344566666666666666666653333 2555566666666666554
Q ss_pred CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcc-ccCCCCCcEEECCCCcccc
Q 039739 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~ 591 (628)
+.++.. +. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++..
T Consensus 413 -----~~~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 413 -----DTIFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp -----GGGGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -----cchhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 333332 21 68888999998888 66776778899999999999888 56665 8888999999999999886
Q ss_pred ccc
Q 039739 592 SIP 594 (628)
Q Consensus 592 ~ip 594 (628)
..|
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 544
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-40 Score=357.24 Aligned_cols=356 Identities=18% Similarity=0.185 Sum_probs=295.1
Q ss_pred CCCCcccccccccCCCccEEEccCCcccCc-----------------CchhHHh--cCccCcEEEeecCCCCCCCCcccc
Q 039739 248 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGE-----------------FPTWLLE--NNTKLRQLSLVNDSLGGPFQLPIH 308 (628)
Q Consensus 248 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~ 308 (628)
+...+ +|..+.++++|++|++++|.+.+. +|..+ . .+++|++|++++|.+.+..+..+.
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHh
Confidence 34445 788899999999999999998864 77765 4 899999999999999988888999
Q ss_pred cCCccCEEEccCCc-CCc-ccchhhhhh-----CCCccEEEcccccCCCcccc--cccCCCCccEEECcCCcccCccchh
Q 039739 309 SHKRLGMLDISNNN-FRG-HIPVEIGDV-----LPSLFSLNISMNALDGSIPS--SFGNMKFLQILDLSNNHLTGEIPEH 379 (628)
Q Consensus 309 ~~~~L~~L~l~~~~-i~~-~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~ 379 (628)
.+++|++|++++|. +++ .+|..+... +++|+.|++++|.++ .+|. .+..+++|+.|++++|.+.+.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence 99999999999998 887 788877652 389999999999999 7887 89999999999999999886777
Q ss_pred hhcCCccccEEEccCCccCCcccccccCCCC-CcEEEccCccCcCcccccccCCC--cccEEEccCCcCCCccCcccc--
Q 039739 380 LVVGCVNLESLALSNNSLEGHMFSRNFNLTN-LRWLQLEGNHFVGEIPQSLSKCF--VLEGLFLNNNSLSGKIPRWLG-- 454 (628)
Q Consensus 380 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-- 454 (628)
.+..+++|++|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 4667899999999999887 55666788888 999999999988 6777776654 899999999999888888887
Q ss_pred -----CCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCC--------cccEEecCCCcCcCCCC
Q 039739 455 -----NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--------SVEQVHLSKNMLHGQLK 521 (628)
Q Consensus 455 -----~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~l~~n~~~~~~~ 521 (628)
.+++|++|++++|.+....+..+..+++|+.|++++|+++...+..+... +|+.|++++|+++ .++
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 78899999999999985555556779999999999999984444444322 8999999999997 677
Q ss_pred cccc-ccCCCccEEECCCcccCCccchhhcCCCCCcEEEC------CCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739 522 RGTF-FNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLIL------GHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 522 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l------~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip 594 (628)
.... ..+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+.++++|++|++++|++ +.||
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 6622 388999999999999996 7888999999999999 45778888999999999999999999999 5899
Q ss_pred ccccc-cc-ccccccCCcccc
Q 039739 595 LCLDN-TT-LHESYNNSSSLD 613 (628)
Q Consensus 595 ~~~~~-~~-~~~~~~~~~~~~ 613 (628)
..+.. ++ ++..+|+...++
T Consensus 583 ~~~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 583 EKITPNISVLDIKDNPNISID 603 (636)
T ss_dssp SCCCTTCCEEECCSCTTCEEE
T ss_pred HhHhCcCCEEECcCCCCcccc
Confidence 86543 33 445555555444
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-40 Score=357.14 Aligned_cols=455 Identities=16% Similarity=0.186 Sum_probs=218.2
Q ss_pred CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccc------------cccCCCccccCccceeecccchhhcCcc
Q 039739 31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNG------------LVRGQGFPHFKSLEHLDMEGALIALNTS 98 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 98 (628)
.+++.|+|+++.+.+..+.++.+ +++|++|++++|.+.. .+|. ..+..|+ ++++.+ ...+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~---~~~~~l~-l~l~~~--~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD---EQKQKMR-MHYQKT--FVDYD 153 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH---HHHHHHH-THHHHH--HTCCC
T ss_pred CCEEEEEecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchH---HHHHHHH-hhHHHh--hhccC
Confidence 36777788777777777777777 7788888887775411 1110 1134455 555555 44444
Q ss_pred hhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEcc--CCcccccCchhhhcCCCCCEEEccccccccc-
Q 039739 99 FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIA--YNDLRGSLPWCLANMTSLRILDVSSNQLTGS- 175 (628)
Q Consensus 99 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~- 175 (628)
.+..+...+..+..+++....+. ......++.+.+. .|.+++ +|..+.++++|++|++++|.+.+.
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~ 222 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIK----------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCC----------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGG
T ss_pred chhhHHHHHHHHhhcCccccccc----------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccc
Confidence 44444432333333333221110 0111222323332 466776 788888888899999988888753
Q ss_pred ----------------cCCCCCC--CCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcc
Q 039739 176 ----------------ISSSPLV--HLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF 237 (628)
Q Consensus 176 ----------------l~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 237 (628)
+|. .+. ++++|++|++++|.+.+.++ ..+.++++|++|++++|..
T Consensus 223 ~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~--------------- 285 (636)
T 4eco_A 223 ICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRG--------------- 285 (636)
T ss_dssp BSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTT---------------
T ss_pred ccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCC---------------
Confidence 666 566 77777777777776554333 3344444444444444430
Q ss_pred cceeeeccCCCCCCcccccccccCCCccEEEccCCcccC-cCchhHHh-----cCccCcEEEeecCCCCCCCCc--cccc
Q 039739 238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPTWLLE-----NNTKLRQLSLVNDSLGGPFQL--PIHS 309 (628)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~--~l~~ 309 (628)
+.+ .+|..+.. .+++|++|++++|.++ ..+. .+..
T Consensus 286 ------------------------------------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 286 ------------------------------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp ------------------------------------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred ------------------------------------CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 332 33333210 1133333333333333 2222 2333
Q ss_pred CCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCC-ccEEECcCCcccCccchhhhc-CCccc
Q 039739 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKF-LQILDLSNNHLTGEIPEHLVV-GCVNL 387 (628)
Q Consensus 310 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~~L 387 (628)
+++|++|++++|.+.+.+| .+.. +++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.. .+++|
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEE-EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred CCCCCEEeCcCCcCccchh-hhCC-CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 3333333333333333333 2211 333333333333333 33333333333 444444443333 23321110 01133
Q ss_pred cEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccccc-------CCCcccEEEccCCcCCCccCccccCCCCcc
Q 039739 388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS-------KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ 460 (628)
Q Consensus 388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 460 (628)
++|++++|.+ .+..|..+. .+++|++|++++|.+....+..+..+++|+
T Consensus 405 ~~L~Ls~N~l------------------------~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 405 SAIDFSYNEI------------------------GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EEEECCSSCT------------------------TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred CEEECcCCcC------------------------CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 3333333333 333333232 333344444444433322222233334444
Q ss_pred eEECCCCcCCCCCcccccC-------CCCCCEEEccCCcCcCCCCCCC--CCCcccEEecCCCcCcCCCCccccccCCCc
Q 039739 461 HIMMPKNHLEGPIPVEFCQ-------LDWLQILDISDNNISGSLPSCF--HPLSVEQVHLSKNMLHGQLKRGTFFNSYSL 531 (628)
Q Consensus 461 ~L~l~~~~~~~~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 531 (628)
+|++++|.+....+..+.. +++|+.|++++|+++......+ .+++|+.|++++|++.+ +|.. +..+++|
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L 538 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-PLNSSTL 538 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCSSC
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChh-hhcCCCC
Confidence 4444444443111111111 1144444444444442111222 34445555555555543 4444 5556667
Q ss_pred cEEEC------CCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739 532 VTLDL------SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 532 ~~L~l------~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
+.|++ ++|++.+.+|..+..+++|+.|++++|+++ .+|..+. ++|++|++++|++.
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 77766 456666677777777777777777777774 6676655 67777777777665
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-39 Score=349.46 Aligned_cols=391 Identities=18% Similarity=0.235 Sum_probs=238.8
Q ss_pred CcccccCchhhhcCCCCCEEEcccccccc-----------------ccCCCCCC--CCCcccEEEcccCeeeeecCCCCc
Q 039739 146 NDLRGSLPWCLANMTSLRILDVSSNQLTG-----------------SISSSPLV--HLTSIEELYLSNNHFQIPISLEPF 206 (628)
Q Consensus 146 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~l~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l 206 (628)
|.+.+ +|..+.++++|++|++++|.+.+ .+|. .++ ++++|++|++++|.+.+.++ ..+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l 511 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLP-DFL 511 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCC-GGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccCh-HHH
Confidence 66665 78888888888888888888875 2666 565 78888888888887665544 557
Q ss_pred CCCCcccEEeccCCc-ccc-cccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCch-hHH
Q 039739 207 FNHSRLKSFYADNNE-INA-EITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPT-WLL 283 (628)
Q Consensus 207 ~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~ 283 (628)
.++++|+.|++++|. +.+ .++..+. . ++..+..+++|+.|++++|.+. .+|. ..+
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~---------~------------L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWT---------R------------LADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHH---------H------------HHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred hCCCCCCEEECcCCCCcccccchHHHH---------h------------hhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 777777777777775 543 2222110 0 0012234457777777777777 6666 123
Q ss_pred hcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCC-ccEEEcccccCCCcccccccCCCC-
Q 039739 284 ENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS-LFSLNISMNALDGSIPSSFGNMKF- 361 (628)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~~~~~~- 361 (628)
..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.+. .+|..+..++.
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccC
Confidence 67777777777777776 444 6677777777777777776 66666554 556 777777777776 55665555443
Q ss_pred -ccEEECcCCcccCccchhh--h--cCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccC-----
Q 039739 362 -LQILDLSNNHLTGEIPEHL--V--VGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK----- 431 (628)
Q Consensus 362 -L~~L~l~~~~~~~~~~~~~--~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----- 431 (628)
|+.|++++|.+.+.++... . ..+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|..+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 7777777777654333211 0 12346666666666666433333345666666666666665 33332222
Q ss_pred ---CCcccEEEccCCcCCCccCcccc--CCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcc
Q 039739 432 ---CFVLEGLFLNNNSLSGKIPRWLG--NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506 (628)
Q Consensus 432 ---~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 506 (628)
+++|++|++++|.+. .+|..+. .+++|+.|++++|.+.+ .|..+..+++|+.|++++|+
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------------- 787 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------------- 787 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------------
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC--------------
Confidence 225666666666555 4444444 56666666666666654 45555566666666665554
Q ss_pred cEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739 507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 586 (628)
Q Consensus 507 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 586 (628)
++++|.+.+.+|.. +..+++|+.|++++|.+ +.+|..+. ++|+.|++++|++....+..+.....+..+.+.+
T Consensus 788 ---~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~ 860 (876)
T 4ecn_A 788 ---DAEGNRILRQWPTG-ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860 (876)
T ss_dssp ---CTTCCBCCCCCCTT-GGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEEC
T ss_pred ---CcccccccccChHH-HhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecC
Confidence 23445555555555 66677777777777777 35555544 4677777777777655555554444444455555
Q ss_pred Cccc
Q 039739 587 NSLH 590 (628)
Q Consensus 587 ~~~~ 590 (628)
++..
T Consensus 861 n~~~ 864 (876)
T 4ecn_A 861 DKTQ 864 (876)
T ss_dssp CTTS
T ss_pred CCcc
Confidence 5444
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.7e-38 Score=343.31 Aligned_cols=532 Identities=21% Similarity=0.206 Sum_probs=345.8
Q ss_pred EEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeec
Q 039739 9 TLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDM 88 (628)
Q Consensus 9 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 88 (628)
+.+.++.+++. +|..+. +++++|+|++|.++...+..|.. +++|++|+|++|.+.. ++.++|.++++|++|+|
T Consensus 35 ~~~c~~~~l~~---vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 35 TYQCMELNFYK---IPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLIL 107 (635)
T ss_dssp EEECTTSCCSS---CCSSSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred EEECCCCCcCc---cCCCCC--cCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEc
Confidence 45666655655 454443 47999999999998766677888 9999999999998875 44458999999999999
Q ss_pred ccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCEEEc
Q 039739 89 EGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRILDV 167 (628)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l 167 (628)
++| .+....+..+.. +++|++|++++|.+.. ++...|.++++|++|++++|.+.. ..|..+..+++|++|++
T Consensus 108 s~N--~l~~l~~~~f~~-L~~L~~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 108 TGN--PIQSLALGAFSG-LSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp TTC--CCCEECGGGGTT-CTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCC--cCCCCCHHHhcC-CCCCCEEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 998 555544556666 9999999999998876 776779999999999999999875 45788889999999999
Q ss_pred cccccccccCCCCCCCCCcc----cEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeee
Q 039739 168 SSNQLTGSISSSPLVHLTSI----EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLS 243 (628)
Q Consensus 168 ~~~~~~~~l~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 243 (628)
++|++. .++...+..+.++ ..++++.+.+.. ++... .....++.+++.++..................+..+.
T Consensus 181 ~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 181 SSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp CSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred cCcccc-ccccccccchhhhhhhhhhhhcccCcccc-cCccc-ccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 999987 4443355554443 367888887763 23222 2334566677766543322211111111111111221
Q ss_pred ccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCC---CCCcccccCCccCEEEccC
Q 039739 244 LSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG---PFQLPIHSHKRLGMLDISN 320 (628)
Q Consensus 244 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~ 320 (628)
+...... ..+. ......+.....+....+....... .....+.....++.+.+.+
T Consensus 258 ~~~~~~~---------------------~~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 258 LGEFRNE---------------------GNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp EECCTTS---------------------CCCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccc---------------------cccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 1000000 0000 0000111233333333333222111 1122334455666666666
Q ss_pred CcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc
Q 039739 321 NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH 400 (628)
Q Consensus 321 ~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 400 (628)
+.+. .++. + .....++.|++.+|.+....+ ..++.|+.+++..+... .... ...+++|+.++++.|.+...
T Consensus 316 ~~~~-~~~~-~-~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~--~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 316 VTIE-RVKD-F-SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFS--EVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp CEEE-ECGG-G-GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC-CBCC--CCBCTTCCEEECCSSCCBEE
T ss_pred cccc-cccc-c-ccchhhhhhhcccccccCcCc---ccchhhhhcccccccCC-CCcc--cccccccccchhhccccccc
Confidence 6554 2221 1 124567777777776653322 23456777777766554 2222 22367777777777765432
Q ss_pred --ccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCCCCcccc
Q 039739 401 --MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIPVEF 477 (628)
Q Consensus 401 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 477 (628)
.......+.+|+.+++..+... ..+..+..+++|+.+++..+..... ....+..+++++.++++.|.+....+..+
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 2233345677777777777665 3444566777788887777655433 23456777788888888887776677777
Q ss_pred cCCCCCCEEEccCCcCcC-CCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCC
Q 039739 478 CQLDWLQILDISDNNISG-SLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL 555 (628)
Q Consensus 478 ~~l~~L~~L~l~~~~~~~-~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 555 (628)
..+++|+.|++++|.+.. ..|..+. +++|+.|++++|++.+..+ ..|.++++|+.|+|++|++++..+..|..+++|
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 778888888888876443 3444443 6778888888888864444 448889999999999999998888889999999
Q ss_pred cEEECCCCcCCccCCccccCC-CCCcEEECCCCccc
Q 039739 556 SHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNSLH 590 (628)
Q Consensus 556 ~~L~l~~~~i~~~~~~~l~~l-~~L~~L~l~~~~~~ 590 (628)
+.|++++|++++..|+.|..+ ++|++|++++|++.
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999998888888888 68999999998886
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=338.86 Aligned_cols=455 Identities=18% Similarity=0.147 Sum_probs=339.2
Q ss_pred CEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceee
Q 039739 8 NTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLD 87 (628)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 87 (628)
++|+++++.++. +|..+. ++|++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|+
T Consensus 3 ~~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDIS-VFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred ceEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence 578999998877 444444 88999999999988777778888 99999999999988865554 788999999999
Q ss_pred cccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCC--CEE
Q 039739 88 MEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSL--RIL 165 (628)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L 165 (628)
+++| .+. .++.. . +++|++|++++|.+.. ..+| ..+.++++|++|++++|.+.+ ..+..+++| ++|
T Consensus 76 Ls~N--~l~-~lp~~--~-l~~L~~L~L~~N~l~~--~~~p-~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 76 LSHN--KLV-KISCH--P-TVNLKHLDLSFNAFDA--LPIC-KEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp CCSS--CCC-EEECC--C-CCCCSEEECCSSCCSS--CCCC-GGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred cCCC--cee-ecCcc--c-cCCccEEeccCCcccc--ccch-hhhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 9998 443 34444 4 8999999999988843 0133 578899999999999998875 456777777 999
Q ss_pred Ecccccc--ccccCCCCCCCCC-cccEEEcccCeeeeecCCCCcCCCCcccEEeccCCc-------ccccccccccCccC
Q 039739 166 DVSSNQL--TGSISSSPLVHLT-SIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNE-------INAEITQSHSLTAP 235 (628)
Q Consensus 166 ~l~~~~~--~~~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~ 235 (628)
++++|.+ .+..|. .+..+. ....+++++|.+.+..+...+..+++|+.+++++|. +.+..+ ....
T Consensus 144 ~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~l~~ 218 (520)
T 2z7x_B 144 LLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA----KLQT 218 (520)
T ss_dssp EEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH----GGGG
T ss_pred Eeecccccccccccc-cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh----hhcc
Confidence 9999988 545554 555554 233566777777666666677788888888888875 333222 1222
Q ss_pred cccceeeeccCCCCCCccccccc---ccCCCccEEEccCCcccCcCchhHH----hcCccCcEEEeecCCCCCCCC-ccc
Q 039739 236 NFQLSRLSLSSGYGDGFIFPKFL---YHQHDLEYVDLSHIKMNGEFPTWLL----ENNTKLRQLSLVNDSLGGPFQ-LPI 307 (628)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~-~~l 307 (628)
..+++.|.+ ..+......+..+ ...++|++|++++|.+.+.+|..++ ..+++|+.++++++.+ ..+ ..+
T Consensus 219 l~~L~~L~l-~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~ 295 (520)
T 2z7x_B 219 NPKLSNLTL-NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI 295 (520)
T ss_dssp CTTCCEEEE-EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred ccchhhccc-cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence 346777777 3333222111111 1246899999999988877777653 5778888889988877 222 222
Q ss_pred ccC---CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccch--hhhc
Q 039739 308 HSH---KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE--HLVV 382 (628)
Q Consensus 308 ~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~ 382 (628)
... .+|+.|++++|.+.. .+ +...+++|+.|++++|.+.+..|..+..+++|+.|++++|++. .++. ..+.
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~ 371 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTT 371 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHT
T ss_pred hcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHh
Confidence 222 579999999998763 22 1134789999999999999878888999999999999999987 4332 3355
Q ss_pred CCccccEEEccCCccCC-cccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcce
Q 039739 383 GCVNLESLALSNNSLEG-HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQH 461 (628)
Q Consensus 383 ~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 461 (628)
.+++|++|++++|.+.+ .....+..+++|++|++++|.+++..+..+. ++|++|++++|.+. .+|..+..+++|++
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 68999999999999987 3334577889999999999999876666553 79999999999998 77777779999999
Q ss_pred EECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739 462 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 496 (628)
Q Consensus 462 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 496 (628)
|++++|.+....+..+..+++|++|++++|++...
T Consensus 449 L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 99999999954444588999999999999998753
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.9e-37 Score=332.83 Aligned_cols=525 Identities=19% Similarity=0.146 Sum_probs=384.0
Q ss_pred hhhhcccCCC---CcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcch
Q 039739 23 ATQELHNFTN---LEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSF 99 (628)
Q Consensus 23 ~~~~~~~~~~---L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 99 (628)
+|+....|.. -++.+.++-+++ ..|..+ .+++++|+|++|.++. ++...|.++++|++|+|++| .+.+..
T Consensus 20 ~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~l---p~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N--~i~~i~ 92 (635)
T 4g8a_A 20 IPESWEPCVEVVPNITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC--EIQTIE 92 (635)
T ss_dssp -----CCSEEEETTTEEECTTSCCS-SCCSSS---CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC--CCCEEC
T ss_pred CCCCCCCccccCCCCEEECCCCCcC-ccCCCC---CcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCC--cCCCcC
Confidence 4555555532 234566665555 334433 3589999999999985 44458999999999999999 566555
Q ss_pred hhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEcccccccc-ccCC
Q 039739 100 LQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTG-SISS 178 (628)
Q Consensus 100 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~ 178 (628)
+.++.. +++|++|++++|.+.. ++...|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+ .+|.
T Consensus 93 ~~~f~~-L~~L~~L~Ls~N~l~~----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 93 DGAYQS-LSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp TTTTTT-CTTCCEEECTTCCCCE----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred hhHhcC-CCCCCEEEccCCcCCC----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence 667777 9999999999999977 887789999999999999999997666779999999999999999863 2344
Q ss_pred CCCCCCCcccEEEcccCeeeeecCCCCcCCCCcc----cEEeccCCcccccccccccCccCcccceeeeccCCCCCCccc
Q 039739 179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL----KSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIF 254 (628)
Q Consensus 179 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 254 (628)
.+..+++|++|++++|.+... ....+..+.++ ..++++.+.+...
T Consensus 168 -~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i----------------------------- 216 (635)
T 4g8a_A 168 -YFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFI----------------------------- 216 (635)
T ss_dssp -GGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEE-----------------------------
T ss_pred -hhccchhhhhhcccCcccccc-ccccccchhhhhhhhhhhhcccCccccc-----------------------------
Confidence 678899999999999988743 33344443333 2445555443221
Q ss_pred ccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCC------CCCCCcccccCCccCEEEccCCcCCc---
Q 039739 255 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL------GGPFQLPIHSHKRLGMLDISNNNFRG--- 325 (628)
Q Consensus 255 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~l~~~~i~~--- 325 (628)
+........++.+++.++..........+..+..++...+..... .......+.....+....+..+....
T Consensus 217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 296 (635)
T 4g8a_A 217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 296 (635)
T ss_dssp CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence 111222334556666665444334444456677776665543222 12222334445555555554432221
Q ss_pred ccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccc
Q 039739 326 HIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRN 405 (628)
Q Consensus 326 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 405 (628)
..... .....+++.+.+.++.+.... .+..+.+++.|++.++.+. .++.. .++.|+.+.+..+.... ....
T Consensus 297 ~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~~--~~~~ 367 (635)
T 4g8a_A 297 GIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGN--AFSE 367 (635)
T ss_dssp ECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSCC--BCCC
T ss_pred chhhh-hhhhccccccccccccccccc--ccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCCC--Cccc
Confidence 12222 234678999999888766432 3566789999999999876 44432 36889999999887654 2334
Q ss_pred cCCCCCcEEEccCccCcC--cccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCc-ccccCCCC
Q 039739 406 FNLTNLRWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDW 482 (628)
Q Consensus 406 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~ 482 (628)
..+++|+.|++++|.+.. ..+..+..+.+|+++++..+... ..+..+..+++|+.+++.++......+ ..+..+++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccc
Confidence 478999999999998753 34556677889999999998876 445568889999999999887664443 45889999
Q ss_pred CCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECC
Q 039739 483 LQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILG 561 (628)
Q Consensus 483 L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 561 (628)
++.++++.|.+....+..+. .+.++.|++++|.....+.+..+..+++|+.|++++|++++.+|..|+.+++|+.|+|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 99999999999877777665 88999999999987655555569999999999999999998889999999999999999
Q ss_pred CCcCCccCCccccCCCCCcEEECCCCccccccccccccc
Q 039739 562 HNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNT 600 (628)
Q Consensus 562 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~ 600 (628)
+|++++..|..|..+++|++|++++|++++..|+.++.+
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 999998788899999999999999999998888877654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-37 Score=338.97 Aligned_cols=353 Identities=18% Similarity=0.182 Sum_probs=290.1
Q ss_pred cccccccCCCccEEEccCCcccC-----------------cCchhH-HhcCccCcEEEeecCCCCCCCCcccccCCccCE
Q 039739 254 FPKFLYHQHDLEYVDLSHIKMNG-----------------EFPTWL-LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGM 315 (628)
Q Consensus 254 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 315 (628)
+|..+..+++|+.|++++|.+.+ .+|..+ +..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999886 277775 348999999999999998888888999999999
Q ss_pred EEccCCc-CCc-ccchhhhh------hCCCccEEEcccccCCCcccc--cccCCCCccEEECcCCcccCccchhhhcCCc
Q 039739 316 LDISNNN-FRG-HIPVEIGD------VLPSLFSLNISMNALDGSIPS--SFGNMKFLQILDLSNNHLTGEIPEHLVVGCV 385 (628)
Q Consensus 316 L~l~~~~-i~~-~~~~~~~~------~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 385 (628)
|++++|. +.+ .+|..+.. .+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence 9999998 876 68876654 2359999999999999 7887 8999999999999999998 787 466789
Q ss_pred cccEEEccCCccCCcccccccCCCC-CcEEEccCccCcCcccccccCCCc--ccEEEccCCcCCCccCcc---cc--CCC
Q 039739 386 NLESLALSNNSLEGHMFSRNFNLTN-LRWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSLSGKIPRW---LG--NLT 457 (628)
Q Consensus 386 ~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~---~~--~~~ 457 (628)
+|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+...+. |++|++++|.+.+..|.. +. .++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999999999988 56667888888 999999999988 67877776654 999999999987655432 22 345
Q ss_pred CcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCC--------cccEEecCCCcCcCCCCccccc--c
Q 039739 458 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--------SVEQVHLSKNMLHGQLKRGTFF--N 527 (628)
Q Consensus 458 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~l~~n~~~~~~~~~~~~--~ 527 (628)
+|+.|++++|.+....+..+..+++|+.|++++|++....+..+... +|+.|++++|++. .+|.. +. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~-l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD-FRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG-GSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH-hhhcc
Confidence 89999999999985444445689999999999999984444444422 8999999999997 67766 54 8
Q ss_pred CCCccEEECCCcccCCccchhhcCCCCCcEEECCC------CcCCccCCccccCCCCCcEEECCCCcccccccccccc-c
Q 039739 528 SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH------NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN-T 600 (628)
Q Consensus 528 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~-~ 600 (628)
+++|+.|++++|.+++ +|..+..+++|+.|++++ |++.+.+|..|.++++|++|+|++|++ +.||..+.+ +
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L 829 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQL 829 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSS
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCC
Confidence 8999999999999996 688889999999999976 778888999999999999999999999 689987653 4
Q ss_pred c-ccccccCCccccccc
Q 039739 601 T-LHESYNNSSSLDKQF 616 (628)
Q Consensus 601 ~-~~~~~~~~~~~~~~~ 616 (628)
+ ++..+|+..+++...
T Consensus 830 ~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 830 YILDIADNPNISIDVTS 846 (876)
T ss_dssp CEEECCSCTTCEEECGG
T ss_pred CEEECCCCCCCccChHH
Confidence 4 555666666665443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-37 Score=331.31 Aligned_cols=461 Identities=19% Similarity=0.174 Sum_probs=256.6
Q ss_pred CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccC
Q 039739 55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCS 134 (628)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 134 (628)
|...++++++++.++. +|. .+. ++|++|++++| .+.+..+..+.. +++|++|++++|.+.. ++++.|.+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N--~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~----~~~~~~~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPK-DLP--PRTKALSLSQN--SISELRMPDISF-LSELRVLRLSHNRIRS----LDFHVFLF 98 (562)
T ss_dssp ---CCEEECTTSCCCS-CCT-TSC--TTCCEEECCSS--CCCCCCGGGTTT-CTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred cCCCcEEEcCCCCCcc-CCC-CCC--CCcCEEECCCC--CccccChhhhcc-CCCccEEECCCCCCCc----CCHHHhCC
Confidence 5556788888887774 454 232 67888888887 555555566666 8888888888887755 55567778
Q ss_pred CCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCC-CCCCCCCcccEEEcccCeeeeecCCCCcCCCCcc-
Q 039739 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL- 212 (628)
Q Consensus 135 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L- 212 (628)
+++|++|++++|.+. .+|.. .+++|++|++++|.+. .++. ..++++++|++|++++|.+.. ..+..+++|
T Consensus 99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~ 170 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLH 170 (562)
T ss_dssp CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSC
T ss_pred CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc----Cchhhhhhce
Confidence 888888888888777 45554 6788888888888776 3331 267778888888888877653 233444444
Q ss_pred -cEEeccCCcc--cccccccccCccCcccceeeeccCCCCCCcccccccccCC-CccEEEccCCcccCcCchhHHhcCcc
Q 039739 213 -KSFYADNNEI--NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTK 288 (628)
Q Consensus 213 -~~L~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~ 288 (628)
+++++++|.+ .+.. |..+..+. ..-.++++.+.+....+...+..+++
T Consensus 171 L~~L~L~~n~l~~~~~~----------------------------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 222 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGE----------------------------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222 (562)
T ss_dssp EEEEEEEESSCCCCSSS----------------------------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred eeEEEeecccccccccC----------------------------cccccccCcceEEEEecCccchhhhhhhcccccce
Confidence 7777777665 2221 12222211 01123444444443333333344455
Q ss_pred CcEEEeecCCCCC----CCCcccccCCccCEEEccCCcCCcccchhhhh--hCCCccEEEcccccCCCcccccc-----c
Q 039739 289 LRQLSLVNDSLGG----PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGD--VLPSLFSLNISMNALDGSIPSSF-----G 357 (628)
Q Consensus 289 L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~-----~ 357 (628)
|+.++++++...- .....+...+.++.+++.++.+.+.....+.. ..++|+.|++++|.+.+.+|..+ .
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence 5555555442100 00112334455555555554443221111111 12466677777766665555544 4
Q ss_pred CCCCccEEECcCCcccCccchhhhcC---CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCc
Q 039739 358 NMKFLQILDLSNNHLTGEIPEHLVVG---CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFV 434 (628)
Q Consensus 358 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 434 (628)
.++.|+.+++..+.+ .+|...... ..+|++|++++|.+.... ....+++|++|++++|.+.+..|..+..+++
T Consensus 303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 378 (562)
T 3a79_B 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378 (562)
T ss_dssp SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC
Confidence 444444444444443 223111111 134556666555543211 1134455555555555555444445555555
Q ss_pred ccEEEccCCcCCCc--cCccccCCCCcceEECCCCcCCCCCc-ccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEec
Q 039739 435 LEGLFLNNNSLSGK--IPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHL 511 (628)
Q Consensus 435 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 511 (628)
|++|++++|.+.+. .+..+.++++|++|++++|.+.+..| ..+..+ ++|+.|++
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l-----------------------~~L~~L~l 435 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----------------------ESILVLNL 435 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC-----------------------TTCCEEEC
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc-----------------------ccCCEEEC
Confidence 55555555554431 12334444455555555544443122 224444 44555555
Q ss_pred CCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcc-ccCCCCCcEEECCCCccc
Q 039739 512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 512 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~ 590 (628)
++|++++.++.. +. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.
T Consensus 436 ~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 436 SSNMLTGSVFRC-LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CSSCCCGGGGSS-CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCcchhhh-hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 555554434333 21 57888888888887 56666668888888888888888 56666 888888888888888887
Q ss_pred cccc
Q 039739 591 GSIP 594 (628)
Q Consensus 591 ~~ip 594 (628)
...|
T Consensus 511 c~c~ 514 (562)
T 3a79_B 511 CTCP 514 (562)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 6554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.5e-37 Score=326.00 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=102.5
Q ss_pred CCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCc--ccccccCCCcccE
Q 039739 360 KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE--IPQSLSKCFVLEG 437 (628)
Q Consensus 360 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~ 437 (628)
.+|+.|++++|.+. .... ...+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .|..+..+++|++
T Consensus 331 ~~L~~L~l~~n~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFI-HMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCC-CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCcc-cccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 34666666666543 2211 13466677777777776665566666777777777777777642 3455677777788
Q ss_pred EEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739 438 LFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML 516 (628)
Q Consensus 438 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 516 (628)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. ++|+.|++++|+++...+..+..++|+.|++++|++
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence 8887777776333 3467778888888888877654444332 577777777777663222222333344444444443
Q ss_pred cCCCCccccccCCCccEEECCCcccC
Q 039739 517 HGQLKRGTFFNSYSLVTLDLSYNRLN 542 (628)
Q Consensus 517 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 542 (628)
+ .++...+..+++|+.|++++|.+.
T Consensus 486 ~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 486 K-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp C-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred C-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 3 233333444444555555554444
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-34 Score=301.05 Aligned_cols=378 Identities=19% Similarity=0.218 Sum_probs=215.9
Q ss_pred CCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEE
Q 039739 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSF 215 (628)
Q Consensus 136 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 215 (628)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.. .....+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEE
Confidence 5666666666666655566666666666666666666545554456666666666666666543 223445556666666
Q ss_pred eccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEee
Q 039739 216 YADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLV 295 (628)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (628)
++++|.+.+.... ...+..+++|++|++++|.+.+..|..++..+++|++|+++
T Consensus 109 ~L~~n~l~~~~~~--------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 109 TLTQCNLDGAVLS--------------------------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp ECTTSCCBTHHHH--------------------------SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred eCCCCCCCccccC--------------------------cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 6655544321110 01244556666666666666555455444555666666665
Q ss_pred cCCCCCCCCcccccC--CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCccc
Q 039739 296 NDSLGGPFQLPIHSH--KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373 (628)
Q Consensus 296 ~~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 373 (628)
+|.+.+..+..+..+ ..++.++++++.+.+..+..+.. .....+..+++|+.|++++|.+.
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCCC
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccc-----------------cccccccccceeeeEecCCCccc
Confidence 555554444333332 34555555555443211111000 00111334566777777777665
Q ss_pred Cccchhhhc--CCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccccc--CCCcccEEEccCCcCCCcc
Q 039739 374 GEIPEHLVV--GCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS--KCFVLEGLFLNNNSLSGKI 449 (628)
Q Consensus 374 ~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~ 449 (628)
+..+..+.. ..++|+.|++++|...+.... .+.+.+..+..+. ..++|++|++++|.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence 444433322 125677777776654332111 0011111111111 2345666666666666555
Q ss_pred CccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCC
Q 039739 450 PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSY 529 (628)
Q Consensus 450 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 529 (628)
+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. .+++..+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~ 347 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG------------------------SIDSRMFENLD 347 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------------------EECGGGGTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC------------------------CcChhHhcCcc
Confidence 566666666666666666666555555666666666666666554 22233367778
Q ss_pred CccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccc
Q 039739 530 SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595 (628)
Q Consensus 530 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~ 595 (628)
+|+.|++++|++++..|..+..+++|++|++++|++++..++.+..+++|++|++++|++.+.+|.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 888888888888877778888888888888888888855555678888888888888888877763
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-33 Score=293.47 Aligned_cols=393 Identities=19% Similarity=0.172 Sum_probs=229.9
Q ss_pred CEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceee
Q 039739 8 NTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLD 87 (628)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 87 (628)
+.++.+++.++. +|. + .++|++|++++|.+++..+..+.. +++|++|++++|.+...++...|.++++|++|+
T Consensus 13 ~~~~c~~~~l~~---lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 13 YNAICINRGLHQ---VPE-L--PAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp TEEECCSSCCSS---CCC-C--CTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred cccCcCCCCccc---CCC-C--CCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEe
Confidence 456777776666 333 2 267888888888887766777777 888888888888776566555778888888888
Q ss_pred cccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccc-cccccCCCCCcEEEccCCcccccCchh-hhcCCCCCEE
Q 039739 88 MEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRIL-DRGLCSLVHLQVLNIAYNDLRGSLPWC-LANMTSLRIL 165 (628)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L 165 (628)
+++| .+.+..+..++. +++|++|++++|.+... .+ ...+..+++|++|++++|.+.+..|.. +..+++|++|
T Consensus 86 Ls~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 86 LDYN--QFLQLETGAFNG-LANLEVLTLTQCNLDGA---VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp CTTC--TTCEECTTTTTT-CTTCCEEECTTSCCBTH---HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CCCC--ccCccChhhccC-cccCCEEeCCCCCCCcc---ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 8887 555555666666 77777777777766320 11 123667777777777777776555554 6677777777
Q ss_pred EccccccccccCCCCCCCC--CcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeee
Q 039739 166 DVSSNQLTGSISSSPLVHL--TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLS 243 (628)
Q Consensus 166 ~l~~~~~~~~l~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 243 (628)
++++|.+.+..+. .+..+ .+|+.+++++|.+..... .
T Consensus 160 ~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~-------------------------~--------------- 198 (455)
T 3v47_A 160 DLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNE-------------------------Y--------------- 198 (455)
T ss_dssp ECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCST-------------------------T---------------
T ss_pred eCCCCcccccChh-hhhccccccccccccccCcccccch-------------------------h---------------
Confidence 7777776633333 44443 455666666554431100 0
Q ss_pred ccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhc--CccCcEEEeecCCCCCCCCcccccCCccCEEEccCC
Q 039739 244 LSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN--NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNN 321 (628)
Q Consensus 244 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 321 (628)
.........+..+++|++|++++|.+.+..+..+... .++|+.|+++++...+... ...
T Consensus 199 -----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~ 259 (455)
T 3v47_A 199 -----WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHT 259 (455)
T ss_dssp -----CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCC
T ss_pred -----hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chh
Confidence 0000011223355678888888888776666655332 2566666666654332110 001
Q ss_pred cCCcccchhhhh-hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc
Q 039739 322 NFRGHIPVEIGD-VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH 400 (628)
Q Consensus 322 ~i~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 400 (628)
.+.+..+..+.. ..++|+.|++++|.+.+..|..+..+++|+ +|++++|.+.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-------------------------~L~Ls~n~l~~~ 314 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE-------------------------QLTLAQNEINKI 314 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC-------------------------EEECTTSCCCEE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCC-------------------------EEECCCCccccc
Confidence 111000001100 123455555555554444444444444444 444444444444
Q ss_pred ccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCC
Q 039739 401 MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL 480 (628)
Q Consensus 401 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 480 (628)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 44444555666666666666554455556666666666666666665556666667777777777777765555556677
Q ss_pred CCCCEEEccCCcCcCCCC
Q 039739 481 DWLQILDISDNNISGSLP 498 (628)
Q Consensus 481 ~~L~~L~l~~~~~~~~~~ 498 (628)
++|+.|++++|++....|
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 777777777777765554
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.3e-34 Score=294.42 Aligned_cols=298 Identities=24% Similarity=0.339 Sum_probs=174.6
Q ss_pred CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739 262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL 341 (628)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 341 (628)
++|++|++++|.+.+ ++. ..++|++|++++|.+++ .+ .+..+++|++|++++|.+. .+|.. .++|+.|
T Consensus 111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 456666666666542 221 11567777777776665 33 4667777777777777766 34432 3477777
Q ss_pred EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739 342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421 (628)
Q Consensus 342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 421 (628)
++++|.+.+ +| .+..+++|+.|++++|.+. .++.. .++|++|++++|.+.. .+ .+..+++|++|++++|.+
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcC
Confidence 777777774 44 4677777777777777776 34431 3577777777777763 22 366777777888777777
Q ss_pred cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 501 (628)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 501 (628)
.+ +|.. +++|++|++++|.+.+ ++.. .++|++|++++|.+.+. +. ..++|+.|++++|++.+. +.
T Consensus 250 ~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~~-- 314 (454)
T 1jl5_A 250 KT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-CD-- 314 (454)
T ss_dssp SS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-CC--
T ss_pred Cc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-cC--
Confidence 63 3332 3677778887777764 3332 36777888887777642 11 125777888887777642 21
Q ss_pred CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc--cCCccccCC---
Q 039739 502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKL--- 576 (628)
Q Consensus 502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l--- 576 (628)
.+.+|+.|++++|++.+ ++.. +++|+.|++++|++++ +|. .+++|+.|++++|++++ .+|..+.++
T Consensus 315 ~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n 385 (454)
T 1jl5_A 315 LPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385 (454)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred CcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc
Confidence 13577788888887753 4443 4678888888887774 444 46778888888888876 567777666
Q ss_pred ----------CCCcEEECCCCcccc--ccccccccccccc
Q 039739 577 ----------NQLQLLDLSNNSLHG--SIPLCLDNTTLHE 604 (628)
Q Consensus 577 ----------~~L~~L~l~~~~~~~--~ip~~~~~~~~~~ 604 (628)
++|++|++++|++++ .||+.++.+++..
T Consensus 386 ~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~ 425 (454)
T 1jl5_A 386 SHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNS 425 (454)
T ss_dssp C---------------------------------------
T ss_pred ccccccccccCcCCEEECCCCcCCccccchhhHhheeCcC
Confidence 889999999999987 8898888877543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-33 Score=290.51 Aligned_cols=427 Identities=23% Similarity=0.277 Sum_probs=217.3
Q ss_pred cCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCC
Q 039739 29 NFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMP 108 (628)
Q Consensus 29 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 108 (628)
+..+|++|++++|.+ +..+..+++ +++|++|++++|.+.+..|. .+.++++|+.+++++|. ..
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~--------------~~ 71 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCL--------------DR 71 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHH--------------HH
T ss_pred ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCc-ccccchhcchhhhhhhh--------------cc
Confidence 357899999999988 678888888 99999999999988877776 78888888888888772 24
Q ss_pred CccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCccc
Q 039739 109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 188 (628)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~ 188 (628)
++++|++++|.+.. ++. -.++|++|++++|.+.+ +|.. +++|++|++++|.+. .++. + .++|+
T Consensus 72 ~l~~L~l~~~~l~~----lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~--~--~~~L~ 134 (454)
T 1jl5_A 72 QAHELELNNLGLSS----LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLE 134 (454)
T ss_dssp TCSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCC
T ss_pred CCCEEEecCCcccc----CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC--C--CCCCC
Confidence 68899999988755 543 23688899999888885 5543 478888888888876 4443 1 15788
Q ss_pred EEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEE
Q 039739 189 ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVD 268 (628)
Q Consensus 189 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 268 (628)
+|++++|.+.+ ++ .+..+++|++|++++|.+.+ +|.. .++|++|+
T Consensus 135 ~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-----------------------------lp~~---~~~L~~L~ 179 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-----------------------------LPDL---PPSLEFIA 179 (454)
T ss_dssp EEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-----------------------------CCCC---CTTCCEEE
T ss_pred EEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-----------------------------cCCC---cccccEEE
Confidence 88888887763 33 36667777777776665431 1111 12455555
Q ss_pred ccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccC
Q 039739 269 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNAL 348 (628)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~ 348 (628)
+++|.+.+ +| .+..+++|+.|++++|.+. .+|.. .++|+.|++++|.+
T Consensus 180 L~~n~l~~-l~--------------------------~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 180 AGNNQLEE-LP--------------------------ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNIL 227 (454)
T ss_dssp CCSSCCSS-CC--------------------------CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCC
T ss_pred CcCCcCCc-Cc--------------------------cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcC
Confidence 55555442 22 2444555555555555554 23321 24666666666666
Q ss_pred CCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccc
Q 039739 349 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428 (628)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 428 (628)
. .+|. +..+++|+.|++++|++. .++. .+++|++|++++|.+.+.. . .+++|+.|++++|.+.+ ++.
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~-~---~~~~L~~L~ls~N~l~~-l~~- 294 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSG-LSE- 294 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSE-ESC-
T ss_pred C-cccc-cCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccccC-c---ccCcCCEEECcCCccCc-ccC-
Confidence 5 4442 566666777777766665 3443 1466777777776665421 1 23667777777776653 221
Q ss_pred ccCCCcccEEEccCCcCCCccCccccCC-CCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCccc
Q 039739 429 LSKCFVLEGLFLNNNSLSGKIPRWLGNL-TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVE 507 (628)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 507 (628)
-.++|++|++++|.+.+ +..+ ++|++|++++|.+.+ .|.. +++|+.|++++|+++. .|. .+++|+
T Consensus 295 --~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~--~l~~L~ 360 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE--LPQNLK 360 (454)
T ss_dssp --CCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--CCTTCC
T ss_pred --cCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc--hhhhcc
Confidence 12567777777776653 1122 477777777777764 3332 4677778887777763 444 456777
Q ss_pred EEecCCCcCcC--CCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc--cCCccccCCCCCcEEE
Q 039739 508 QVHLSKNMLHG--QLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKLNQLQLLD 583 (628)
Q Consensus 508 ~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~ 583 (628)
.|++++|++++ .+|.. +..|. .|.+.+.+|.. +++|+.|++++|++++ .+|. +++.|.
T Consensus 361 ~L~L~~N~l~~l~~ip~~-------l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~ 422 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPES-------VEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLR 422 (454)
T ss_dssp EEECCSSCCSSCCCCCTT-------CCEEE--CCC---------------------------------------------
T ss_pred EEECCCCCCCcCCCChHH-------HHhhh--hcccccccccc---cCcCCEEECCCCcCCccccchh------hHhhee
Confidence 77777777765 34332 33332 34455455542 4789999999999985 4453 457778
Q ss_pred CCCCcccccccccccccc
Q 039739 584 LSNNSLHGSIPLCLDNTT 601 (628)
Q Consensus 584 l~~~~~~~~ip~~~~~~~ 601 (628)
+.+|.+.+.+|...+...
T Consensus 423 ~~~~~~~~~~~~~~~~~~ 440 (454)
T 1jl5_A 423 MNSERVVDPYEFAHETTD 440 (454)
T ss_dssp ------------------
T ss_pred CcCcccCCccccCHHHhh
Confidence 899998887777766643
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.6e-32 Score=279.83 Aligned_cols=281 Identities=25% Similarity=0.294 Sum_probs=186.6
Q ss_pred cccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCC
Q 039739 258 LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS 337 (628)
Q Consensus 258 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 337 (628)
+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+. ..+..+++|++|++++ .+. ..+. +. .+++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~-~~~~-~~-~l~~ 178 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVT-DLKP-LA-NLTT 178 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCC-CCGG-GT-TCTT
T ss_pred hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-ccc-Cchh-hc-cCCC
Confidence 55678888888888887643 33 46888888888888877653 2467788888888863 333 2222 33 3678
Q ss_pred ccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEcc
Q 039739 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417 (628)
Q Consensus 338 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 417 (628)
|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|+++
T Consensus 179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 88888888877643 236677788888888877763323 33477788888887777653 345667777777777
Q ss_pred CccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCC
Q 039739 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497 (628)
Q Consensus 418 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 497 (628)
+|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+..
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 777765433 6677777777777777764433 6677777777777777765443 667777777777777776544
Q ss_pred CCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 498 PSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 498 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
+ ...+++|+.|++++|++.+. + .+..+++|+.|++++|.+++..| +..+++|+.|++++|+++
T Consensus 326 ~-~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 326 P-VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp G-GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred h-hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 3 23356666666666666432 1 25566666666666666665544 566666666666666665
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.7e-31 Score=275.43 Aligned_cols=346 Identities=24% Similarity=0.282 Sum_probs=185.4
Q ss_pred CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739 107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 186 (628)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~ 186 (628)
++++++|++.++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++. +..+++
T Consensus 45 l~~l~~L~l~~~~i~~----l~--~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP--LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred hccccEEecCCCCCcc----Cc--chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc-cChh--hcCCCC
Confidence 3445555555554433 32 244555555555555555532 22 555555555555555554 2332 555555
Q ss_pred ccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccE
Q 039739 187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEY 266 (628)
Q Consensus 187 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 266 (628)
|++|++++|.+... ..+..+++|++|++++|.+.+ + ..+..+++|+.
T Consensus 114 L~~L~L~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~-----------------------------~-~~~~~l~~L~~ 160 (466)
T 1o6v_A 114 LTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD-----------------------------I-SALSGLTSLQQ 160 (466)
T ss_dssp CCEEECCSSCCCCC---GGGTTCTTCSEEEEEEEEECC-----------------------------C-GGGTTCTTCSE
T ss_pred CCEEECCCCCCCCC---hHHcCCCCCCEEECCCCccCC-----------------------------C-hhhccCCcccE
Confidence 55555555544321 114444444444444443221 0 01334455555
Q ss_pred EEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccc
Q 039739 267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN 346 (628)
Q Consensus 267 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~ 346 (628)
|++++ .+.. .+. +..+++|+.|+++++.+.+. ..+.. +++|+.|++++|
T Consensus 161 L~l~~-~~~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~-------------------------l~~L~~L~l~~n 209 (466)
T 1o6v_A 161 LSFGN-QVTD-LKP--LANLTTLERLDISSNKVSDI--SVLAK-------------------------LTNLESLIATNN 209 (466)
T ss_dssp EEEEE-SCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGGG-------------------------CTTCSEEECCSS
T ss_pred eecCC-cccC-chh--hccCCCCCEEECcCCcCCCC--hhhcc-------------------------CCCCCEEEecCC
Confidence 55542 2221 111 23445555555555444332 12333 455555555555
Q ss_pred cCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc
Q 039739 347 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP 426 (628)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 426 (628)
.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred ccccccc--ccccCCCCEEECCCCCcc-cchh--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence 5543322 344555555555555554 2221 3345566666666665554322 4556666666666666654322
Q ss_pred ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcc
Q 039739 427 QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506 (628)
Q Consensus 427 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 506 (628)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+. +....+++|
T Consensus 283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 355 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNI 355 (466)
T ss_dssp --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTC
T ss_pred --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCC
Confidence 5566666666666666654332 5666677777777776665444 55667777777777766643 333346677
Q ss_pred cEEecCCCcCcCCCCccccccCCCccEEECCCcccCCc
Q 039739 507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN 544 (628)
Q Consensus 507 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 544 (628)
+.|++++|++.+..+ +..+++|+.|++++|.+++.
T Consensus 356 ~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECC
T ss_pred CEEeCCCCccCccch---hhcCCCCCEEeccCCcccCC
Confidence 777777777755544 67789999999999999864
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=2.6e-31 Score=273.89 Aligned_cols=360 Identities=21% Similarity=0.193 Sum_probs=198.7
Q ss_pred hhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCC
Q 039739 102 IIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181 (628)
Q Consensus 102 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l 181 (628)
.+++ +++|++|+++++.+.. ++ .+..+++|++|++++|.+.+. + +..+++|++|++++|.+. .++ +
T Consensus 37 ~~~~-l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~ 102 (457)
T 3bz5_A 37 SEEQ-LATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---V 102 (457)
T ss_dssp EHHH-HTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---C
T ss_pred ChhH-cCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---c
Confidence 4455 6777777777776644 43 466777777777777776643 3 666777777777777765 232 6
Q ss_pred CCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccC
Q 039739 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQ 261 (628)
Q Consensus 182 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 261 (628)
+.+++|++|++++|.+.. + .+..+++|++|++++|.+.+. .+..+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~l 147 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI-------------------------------DVSHN 147 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC-------------------------------CCTTC
T ss_pred CCCCcCCEEECCCCcCCe-e---cCCCCCcCCEEECCCCcccee-------------------------------ccccC
Confidence 666777777777776653 1 255566666666665543210 12344
Q ss_pred CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739 262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL 341 (628)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 341 (628)
++|+.|++++|...+.+ .+..+++|+.|++++|.+. .++ + ..+++|+.|
T Consensus 148 ~~L~~L~l~~n~~~~~~---------------------------~~~~l~~L~~L~ls~n~l~-~l~--l-~~l~~L~~L 196 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKL---------------------------DVTPQTQLTTLDCSFNKIT-ELD--V-SQNKLLNRL 196 (457)
T ss_dssp TTCCEEECTTCSCCCCC---------------------------CCTTCTTCCEEECCSSCCC-CCC--C-TTCTTCCEE
T ss_pred CcCCEEECCCCCccccc---------------------------ccccCCcCCEEECCCCccc-eec--c-ccCCCCCEE
Confidence 45555555555332222 2334444444444444444 222 1 124455555
Q ss_pred EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739 342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421 (628)
Q Consensus 342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 421 (628)
++++|.+++. .+..+++|+.|++++|++. .+| +..+++|+.|++++|.+++.. +..+++|+.|+++++
T Consensus 197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-- 264 (457)
T 3bz5_A 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-- 264 (457)
T ss_dssp ECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--
T ss_pred ECcCCcCCee---ccccCCCCCEEECcCCccc-ccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--
Confidence 5555555432 2445555555555555554 233 233555555555555555432 234455555554443
Q ss_pred cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 501 (628)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 501 (628)
+|++|++++|...+..| +..+++|+.|++++|...+..|. ..++|+.|++++|
T Consensus 265 ------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------- 317 (457)
T 3bz5_A 265 ------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------- 317 (457)
T ss_dssp ------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------
T ss_pred ------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc----------
Confidence 23344445554443333 34456666666666655444432 3344555554444
Q ss_pred CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcE
Q 039739 502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 581 (628)
Q Consensus 502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 581 (628)
++|+.|++++|++++ + . +..+++|+.|++++|++++ ++.|..|++++|.+.+. .++.+|+.
T Consensus 318 --~~L~~L~L~~N~l~~-l--~-l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~ 378 (457)
T 3bz5_A 318 --PKLVYLYLNNTELTE-L--D-VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK 378 (457)
T ss_dssp --TTCCEEECTTCCCSC-C--C-CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred --ccCCEEECCCCcccc-c--c-cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence 356666666666654 2 1 6667777777777777764 24555566777776643 24456677
Q ss_pred EECCCCcccccccccccc
Q 039739 582 LDLSNNSLHGSIPLCLDN 599 (628)
Q Consensus 582 L~l~~~~~~~~ip~~~~~ 599 (628)
+++++|+++|.||+.+..
T Consensus 379 l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp BCCBTTBEEEECCTTCBC
T ss_pred cccccCcEEEEcChhHhc
Confidence 788888888888776654
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.8e-31 Score=275.39 Aligned_cols=301 Identities=20% Similarity=0.183 Sum_probs=177.7
Q ss_pred CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739 262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL 341 (628)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 341 (628)
+.++.|+++++.+.+..+..+ ..+++|++|+++++.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 456677777766654333333 56666666666666666655556666666666666666665 4444333336666666
Q ss_pred EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739 342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421 (628)
Q Consensus 342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 421 (628)
++++|.+.+..+..+..+++|+.|++++|.+. .+....+.++++|++|++++|.++......+..+++|+.|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 66666666555556666666666666666665 33333444566666666666666655555555666666666666666
Q ss_pred cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 501 (628)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 501 (628)
.+..+..+..+++|++|++++|...+..+.......+|++|++++|.+....+..+..+++|+.|++++|++.+..+..+
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 65555556666666666666665554544444444566666666666664444456666666666666666654444333
Q ss_pred C-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 502 H-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 502 ~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
. +++|+.|++++|++.+..+. .+..+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccccCCEEECCCCccceECHH-HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 2 55556666666555432222 2555556666666666555544455555555666666665554
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1e-29 Score=254.40 Aligned_cols=308 Identities=21% Similarity=0.287 Sum_probs=253.9
Q ss_pred ccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCC
Q 039739 257 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLP 336 (628)
Q Consensus 257 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 336 (628)
.+..+++|++|+++++.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ .+. .++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCC
Confidence 3457788999999998886 3443 3688999999999998886543 889999999999999887 454 343 489
Q ss_pred CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEc
Q 039739 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416 (628)
Q Consensus 337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 416 (628)
+|+.|++++|.+.+. +. +..+++|+.|++++|......+. +..+++|++|++++|.+..... +..+++|++|++
T Consensus 111 ~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 999999999998854 33 88899999999999966545444 5678999999999998876443 778999999999
Q ss_pred cCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739 417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 496 (628)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 496 (628)
++|.+.+..+ +..+++|+++++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~- 257 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD- 257 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-
Confidence 9999875433 7889999999999999875443 8889999999999999986544 8899999999999999885
Q ss_pred CCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCC
Q 039739 497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL 576 (628)
Q Consensus 497 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l 576 (628)
.+....+++|+.|++++|++.+ ++ .+..+++|+.|++++|.+++..+..++.+++|+.|++++|++++..| +..+
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l 332 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred ChhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence 3445558899999999999864 32 37889999999999999998888999999999999999999995545 8899
Q ss_pred CCCcEEECCCCccc
Q 039739 577 NQLQLLDLSNNSLH 590 (628)
Q Consensus 577 ~~L~~L~l~~~~~~ 590 (628)
++|++|++++|+++
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 99999999999986
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4e-30 Score=265.02 Aligned_cols=358 Identities=18% Similarity=0.177 Sum_probs=255.1
Q ss_pred CccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchh
Q 039739 76 GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC 155 (628)
Q Consensus 76 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 155 (628)
.+.++++|++|+++++ .+.+ .+ .++. +++|++|++++|.+.. ++ +..+++|++|++++|.+.+. +
T Consensus 37 ~~~~l~~L~~L~Ls~n--~l~~-~~-~l~~-l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS--SITD-MT-GIEK-LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp EHHHHTTCCEEECCSS--CCCC-CT-TGGG-CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC-C--
T ss_pred ChhHcCCCCEEEccCC--Cccc-Ch-hhcc-cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee-e--
Confidence 5788999999999999 4444 33 5777 9999999999999866 42 88999999999999999854 3
Q ss_pred hhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccC
Q 039739 156 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAP 235 (628)
Q Consensus 156 l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 235 (628)
+..+++|++|++++|.+. .++ +..+++|++|++++|.+.+ + .+..+++|++|++++|...+.
T Consensus 102 ~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~---------- 163 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITK---------- 163 (457)
T ss_dssp CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCC----------
T ss_pred cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccc----------
Confidence 889999999999999998 443 8899999999999999875 2 377889999999988743211
Q ss_pred cccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCE
Q 039739 236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGM 315 (628)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 315 (628)
+ .+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+++. .+..+++|+.
T Consensus 164 ------------------~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~ 216 (457)
T 3bz5_A 164 ------------------L--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF 216 (457)
T ss_dssp ------------------C--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred ------------------c--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence 1 24567889999999998874 44 36778888888888877764 3667777888
Q ss_pred EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCC
Q 039739 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395 (628)
Q Consensus 316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 395 (628)
|++++|.+.+ +| +. .+++|+.|++++|.+++.. +..+++|+.|+++++ +|+.+++++|
T Consensus 217 L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n 274 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHN 274 (457)
T ss_dssp EECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTC
T ss_pred EECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCC
Confidence 8888777764 55 32 3677777777777776532 345666777766554 3444556666
Q ss_pred ccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcc
Q 039739 396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV 475 (628)
Q Consensus 396 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 475 (628)
...+..+ ++.+++|+.|++++|...+.+|. ..++|+.|+++ ++++|++|++++|.+++.
T Consensus 275 ~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l--- 333 (457)
T 3bz5_A 275 TQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTELTEL--- 333 (457)
T ss_dssp TTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSCC---
T ss_pred ccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCCccccc---
Confidence 5444332 34677777888777776655553 23444444433 346788888888888763
Q ss_pred cccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhh
Q 039739 476 EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV 549 (628)
Q Consensus 476 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 549 (628)
.+..+++|+.|++++|++.+ .+.|..|.+.+|.+.|. ..+.+|+.+++++|++++.+|..+
T Consensus 334 ~l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~------~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 334 DVSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE------GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE------EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ccccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec------ceeeecCccccccCcEEEEcChhH
Confidence 27778888888888887764 24455566666666543 223456666777777776666543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=269.66 Aligned_cols=300 Identities=20% Similarity=0.144 Sum_probs=143.0
Q ss_pred cceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEE
Q 039739 238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD 317 (628)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 317 (628)
.++.|++ ..+.+....+..+..+++|++|++++|.+.+..|..+ ..+++|++|+++++.+.......+..+++|++|+
T Consensus 33 ~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDL-GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEEC-CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEEC-CCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4445555 3444444444444555555555555554443333332 4455555555555554444333444555555555
Q ss_pred ccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCcc
Q 039739 318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397 (628)
Q Consensus 318 l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 397 (628)
+++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDYMFQD-LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTTTTTT-CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccccCChhHccc-cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcC
Confidence 5555544333323322 455555555555554444444555555555555555544 34433344455555555555554
Q ss_pred CCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccc
Q 039739 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 477 (628)
Q Consensus 398 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 477 (628)
.......+..+++|+.|++++|...+.++.......+|++|++++|.+....+..+.++++|+.|++++|.+.+..+..+
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 44444444445555555555554444444333333455555555555543333344555555555555555544444445
Q ss_pred cCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccC
Q 039739 478 CQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542 (628)
Q Consensus 478 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 542 (628)
..+++|+.|++++|++.+..+..+. +++|+.|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCcc
Confidence 5555555555555555444443332 445555555555553 233333444555555555555443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.7e-29 Score=254.35 Aligned_cols=310 Identities=22% Similarity=0.199 Sum_probs=255.6
Q ss_pred cCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCcc
Q 039739 260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339 (628)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 339 (628)
.+++++.++++++.+. .+|..++..+++|++|+++++.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc-CCCCCC
Confidence 4578999999998876 67777778999999999999998877777888999999999999998854444444 489999
Q ss_pred EEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCc
Q 039739 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN 419 (628)
Q Consensus 340 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 419 (628)
.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++.. .+..+++|+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 9999999998554445788999999999999987 56655567789999999999988764 3457899999999999
Q ss_pred cCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC
Q 039739 420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 499 (628)
Q Consensus 420 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 499 (628)
.+.+ +...++|++|++++|.+... +. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 7763 34456899999999988744 32 2357899999999998854 5688999999999999999877676
Q ss_pred CCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCC
Q 039739 500 CFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 578 (628)
Q Consensus 500 ~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~ 578 (628)
.+. +++|+.|++++|++. .++.. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .++ +..+++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~ 340 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT 340 (390)
T ss_dssp GGTTCSSCCEEECCSSCCC-EEECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCC
T ss_pred HccccccCCEEECCCCcCc-ccCcc-cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhcc
Confidence 654 889999999999996 34544 577899999999999998 56777888999999999999998 444 778899
Q ss_pred CcEEECCCCcccc
Q 039739 579 LQLLDLSNNSLHG 591 (628)
Q Consensus 579 L~~L~l~~~~~~~ 591 (628)
|++|++++|++..
T Consensus 341 L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 341 LKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCEEH
T ss_pred CCEEEcCCCCccc
Confidence 9999999999975
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1e-28 Score=247.21 Aligned_cols=304 Identities=25% Similarity=0.372 Sum_probs=172.6
Q ss_pred CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739 107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 186 (628)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~ 186 (628)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++ .+..+++
T Consensus 43 l~~L~~L~l~~~~i~~----~~--~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----IQ--GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTT
T ss_pred cccccEEEEeCCcccc----ch--hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch--HHcCCCc
Confidence 5566666666655533 32 355566666666666665532 22 556666666666666655 333 2556666
Q ss_pred ccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccE
Q 039739 187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEY 266 (628)
Q Consensus 187 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 266 (628)
|++|++++|.+... ..+..+++|+.+++++|..... +..+..+++|+.
T Consensus 112 L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~~~~~-----------------------------~~~~~~l~~L~~ 159 (347)
T 4fmz_A 112 LRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLSD-----------------------------LSPLSNMTGLNY 159 (347)
T ss_dssp CSEEECTTSCCCCC---GGGTTCTTCCEEECTTCTTCCC-----------------------------CGGGTTCTTCCE
T ss_pred CCEEECcCCcccCc---hhhccCCceeEEECCCCCCccc-----------------------------ccchhhCCCCcE
Confidence 66666666654421 1134444444444444321100 011334444555
Q ss_pred EEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccc
Q 039739 267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN 346 (628)
Q Consensus 267 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~ 346 (628)
|+++++.+. +... +..+++|++|++++|.+. .++. + ..+++|+.+++++|
T Consensus 160 L~l~~~~~~-------------------------~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 160 LTVTESKVK-------------------------DVTP--IANLTDLYSLSLNYNQIE-DISP-L-ASLTSLHYFTAYVN 209 (347)
T ss_dssp EECCSSCCC-------------------------CCGG--GGGCTTCSEEECTTSCCC-CCGG-G-GGCTTCCEEECCSS
T ss_pred EEecCCCcC-------------------------Cchh--hccCCCCCEEEccCCccc-cccc-c-cCCCccceeecccC
Confidence 555554443 2211 344555555555555554 2222 2 23566666666666
Q ss_pred cCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc
Q 039739 347 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP 426 (628)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 426 (628)
.+.+..+ +..+++|+.|++++|.+. ..+. +..+++|++|++++|.++.. ..+..+++|+.|++++|.+.+.
T Consensus 210 ~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-- 280 (347)
T 4fmz_A 210 QITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-- 280 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred CCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--
Confidence 6654332 556666777777666665 3333 44566777777777766542 3455677777777777776643
Q ss_pred ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 427 QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 427 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..| +..+++|+.|++++|+++
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 346667777777777777766666677777777777777777775544 667777777777777664
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.7e-28 Score=261.54 Aligned_cols=311 Identities=22% Similarity=0.197 Sum_probs=244.1
Q ss_pred cCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCcc
Q 039739 260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339 (628)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 339 (628)
.+.+++.++++++.+. .+|..++..+++|+.|+++++.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCC
Confidence 3567888888888776 56666678888999999998888877777788888999999999888754444444 488899
Q ss_pred EEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCc
Q 039739 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN 419 (628)
Q Consensus 340 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 419 (628)
.|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+++. .+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 9999999888555555788889999999998887 55555566788899999998888764 3456788899999888
Q ss_pred cCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC
Q 039739 420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 499 (628)
Q Consensus 420 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 499 (628)
.+.+ +...++|++|++++|.+....+ .+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 7763 3445688899999988763332 22 3688999999998875 35688889999999999988877676
Q ss_pred CCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCC
Q 039739 500 CFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 578 (628)
Q Consensus 500 ~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~ 578 (628)
.+. +++|+.|++++|.+.+ ++.. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++. ++ +..+++
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~ 346 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHT 346 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcc-cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCC
Confidence 554 7889999999998864 4444 567899999999999998 567778889999999999999983 43 677899
Q ss_pred CcEEECCCCccccc
Q 039739 579 LQLLDLSNNSLHGS 592 (628)
Q Consensus 579 L~~L~l~~~~~~~~ 592 (628)
|++|++++|++.+.
T Consensus 347 L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 347 LKNLTLSHNDWDCN 360 (597)
T ss_dssp CSEEECCSSCEEHH
T ss_pred CCEEEeeCCCCCCh
Confidence 99999999998753
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.1e-28 Score=247.53 Aligned_cols=300 Identities=22% Similarity=0.202 Sum_probs=250.8
Q ss_pred cCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccE
Q 039739 285 NNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364 (628)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 364 (628)
.+++++.++++++.++......+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 568999999999988776555678899999999999999844333444 4899999999999999877888999999999
Q ss_pred EECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc
Q 039739 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 444 (628)
Q Consensus 365 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 444 (628)
|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+++. .+..+++|++|++++|.
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999998 88887777899999999999999887777888999999999999998754 35678899999999998
Q ss_pred CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccc
Q 039739 445 LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGT 524 (628)
Q Consensus 445 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 524 (628)
+. .+...++|++|++++|.+... +. ...++|+.|++++|.+.+. +....++.|+.|++++|.+.+..+..
T Consensus 198 l~-----~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~- 267 (390)
T 3o6n_A 198 LS-----TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP- 267 (390)
T ss_dssp CS-----EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG-
T ss_pred cc-----ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhH-
Confidence 76 234567899999999998744 33 3358999999999999853 44445899999999999997554544
Q ss_pred cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739 525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601 (628)
Q Consensus 525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~ 601 (628)
+..+++|+.|++++|++++ ++..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++...-+..+.+++
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~ 342 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 342 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCC
Confidence 8899999999999999984 5666788999999999999999 7888899999999999999999854334444444
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.7e-32 Score=281.18 Aligned_cols=344 Identities=19% Similarity=0.131 Sum_probs=211.4
Q ss_pred cccccCCCccEEEccCCcccCcCchhHHhcCc----cCcEEEeecCCCCCC----CCcccccCCccCEEEccCCcCCccc
Q 039739 256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT----KLRQLSLVNDSLGGP----FQLPIHSHKRLGMLDISNNNFRGHI 327 (628)
Q Consensus 256 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~~ 327 (628)
..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.+++. .+..+..+++|++|++++|.+.+..
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 34555666777777776665544545544555 577777777766642 2445667778888888887776444
Q ss_pred chhhhhh----CCCccEEEcccccCCCc----ccccccCCCCccEEECcCCcccCccchhhhc----CCccccEEEccCC
Q 039739 328 PVEIGDV----LPSLFSLNISMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHLVV----GCVNLESLALSNN 395 (628)
Q Consensus 328 ~~~~~~~----~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~ 395 (628)
+..+... .++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.....+.. ..++|++|++++|
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 4443332 34688888888877753 2445666778888888888765332322222 2457888888888
Q ss_pred ccCCcc----cccccCCCCCcEEEccCccCcCcc-----cccccCCCcccEEEccCCcCCCc----cCccccCCCCcceE
Q 039739 396 SLEGHM----FSRNFNLTNLRWLQLEGNHFVGEI-----PQSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQHI 462 (628)
Q Consensus 396 ~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L 462 (628)
.++... +..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 776542 344456778888888888765432 22223567788888888877643 45556667888888
Q ss_pred ECCCCcCCCCCccccc-----CCCCCCEEEccCCcCcCCCCCCC-----CCCcccEEecCCCcCcCCCCcc---ccc-cC
Q 039739 463 MMPKNHLEGPIPVEFC-----QLDWLQILDISDNNISGSLPSCF-----HPLSVEQVHLSKNMLHGQLKRG---TFF-NS 528 (628)
Q Consensus 463 ~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~---~~~-~~ 528 (628)
++++|.+.+..+..+. ..++|+.|++++|.+++.....+ ..++|+.|++++|.+.+..+.. .+. ..
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 8888876543333322 33678888888877664321111 1466777777777664322221 011 15
Q ss_pred CCccEEECCCcccCC----ccchhhcCCCCCcEEECCCCcCCccCCcccc-----CCCCCcEEECCCCcccccccccccc
Q 039739 529 YSLVTLDLSYNRLNG----NISDWVDGLSQLSHLILGHNNLEGEVPVQLC-----KLNQLQLLDLSNNSLHGSIPLCLDN 599 (628)
Q Consensus 529 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-----~l~~L~~L~l~~~~~~~~ip~~~~~ 599 (628)
++|+.|++++|.+++ .++..+..+++|++|++++|++++.....+. ...+|+.|++.++......++.++.
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence 678888888887765 5666677777888888888877744322222 2345777777777666544444433
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-27 Score=237.22 Aligned_cols=287 Identities=20% Similarity=0.232 Sum_probs=199.3
Q ss_pred cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367 (628)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 367 (628)
.++.++++++.++. .+..+ .+.++.|++++|.+.+..+..+.. +++|+.|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 45556665555442 22222 356777777777776333334433 677777777777777666677777777888888
Q ss_pred cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcC--cccccccCCCcccEEEccCCcC
Q 039739 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSL 445 (628)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 445 (628)
++|.+. .++...+ ++|++|++++|.+.......+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 777776 5665442 677788888777776655566777788888888777752 455566666 778888888777
Q ss_pred CCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccc
Q 039739 446 SGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGT 524 (628)
Q Consensus 446 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~ 524 (628)
.+ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+. +++|+.|++++|++. .+|..
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~- 259 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG- 259 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT-
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh-
Confidence 64 343333 6788888888888776667777888888888888887765554443 677888888888775 66665
Q ss_pred cccCCCccEEECCCcccCCccchhhcC------CCCCcEEECCCCcCC--ccCCccccCCCCCcEEECCCCc
Q 039739 525 FFNSYSLVTLDLSYNRLNGNISDWVDG------LSQLSHLILGHNNLE--GEVPVQLCKLNQLQLLDLSNNS 588 (628)
Q Consensus 525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~i~--~~~~~~l~~l~~L~~L~l~~~~ 588 (628)
+..+++|+.|++++|.+++..+..|.. .+.|+.|++++|++. ...|..|..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 778888999999998888766666654 367888999999887 5667788888999999988875
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5e-30 Score=276.38 Aligned_cols=435 Identities=17% Similarity=0.141 Sum_probs=257.2
Q ss_pred hhhhcccCCCCcEEecCCCCC--------------CCcchhHhhccCCCCceEecccccccccccCCCccc-cCc-ccee
Q 039739 23 ATQELHNFTNLEYLTLDSSSL--------------HISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPH-FKS-LEHL 86 (628)
Q Consensus 23 ~~~~~~~~~~L~~L~l~~~~~--------------~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~-L~~L 86 (628)
.+..+.++++|++|+++++.. .......+...+++|++|++++|.+....+. .+.. ++. |++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEE
Confidence 345566777788888866421 1112333332378888888888766544332 3444 344 8888
Q ss_pred ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccc----ccCchhhhcCCCC
Q 039739 87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR----GSLPWCLANMTSL 162 (628)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~----~~~~~~l~~l~~L 162 (628)
++++|. .........+...+++|++|++++|.+...+.......+..+++|++|++++|.+. ..++..+..+++|
T Consensus 144 ~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 144 KLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred ECcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 888773 12222222333338888888888887643222212234567788888888888775 2445556678888
Q ss_pred CEEEccccccccccCCCCCCCCCcccEEEcccCeeee--ecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739 163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQI--PISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240 (628)
Q Consensus 163 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 240 (628)
++|++++|.+. .++. .+..+++|++|+++...... ......+..+++|+.+.+.++.
T Consensus 223 ~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------------------- 281 (592)
T 3ogk_B 223 VSVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG------------------- 281 (592)
T ss_dssp CEEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-------------------
T ss_pred cEEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-------------------
Confidence 88888888776 4554 57778888888887532210 1111234455566666554321
Q ss_pred eeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCC-CCcccccCCccCEEEcc
Q 039739 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP-FQLPIHSHKRLGMLDIS 319 (628)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~ 319 (628)
...+|..+..+++|++|++++|.+.+.....++..+++|++|++.++ +.+. .......+++|++|+++
T Consensus 282 ----------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 282 ----------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp ----------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ----------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEee
Confidence 12344455566777777777776544444344566777777777632 2221 11122456777777777
Q ss_pred C-----------CcCCcccchhhhhhCCCccEEEcccccCCCcccccccC-CCCccEEECc----CCcccCc----cchh
Q 039739 320 N-----------NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGN-MKFLQILDLS----NNHLTGE----IPEH 379 (628)
Q Consensus 320 ~-----------~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~----~~~~ 379 (628)
+ +.+++.....+...+++|+.|++..+.+++..+..+.. +++|+.|+++ .+.+++. ....
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 3 34443323333445778888888766776555444444 7778888775 3444421 1112
Q ss_pred hhcCCccccEEEccCCc--cCCccccccc-CCCCCcEEEccCccCcCc-ccccccCCCcccEEEccCCcCCCc-cCcccc
Q 039739 380 LVVGCVNLESLALSNNS--LEGHMFSRNF-NLTNLRWLQLEGNHFVGE-IPQSLSKCFVLEGLFLNNNSLSGK-IPRWLG 454 (628)
Q Consensus 380 ~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~ 454 (628)
.+.++++|++|+++.|. +++.....+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. .+..+.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 24457888888886543 4443333333 477888888888877643 344556778888888888876543 333445
Q ss_pred CCCCcceEECCCCcCCCCCcccc-cCCCCCCEEEccCC
Q 039739 455 NLTRLQHIMMPKNHLEGPIPVEF-CQLDWLQILDISDN 491 (628)
Q Consensus 455 ~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 491 (628)
.+++|++|++++|+++......+ ..+|.+....+..+
T Consensus 511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 67888888888888775544333 35676666665544
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.3e-27 Score=233.28 Aligned_cols=268 Identities=20% Similarity=0.192 Sum_probs=173.5
Q ss_pred CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEE
Q 039739 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESL 390 (628)
Q Consensus 311 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 390 (628)
+.++.|++++|.+.+..+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+. .++... .++|++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred CCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEE
Confidence 4555666666655522222332 3566666666666666555666666666666666666665 455433 2566667
Q ss_pred EccCCccCCcccccccCCCCCcEEEccCccCcC--cccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739 391 ALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH 468 (628)
Q Consensus 391 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 468 (628)
++++|.+.......+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. ++..+. ++|++|++++|.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence 777666665555556666677777777666642 345566667777777777776653 333332 677777777777
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch
Q 039739 469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD 547 (628)
Q Consensus 469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 547 (628)
+.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|++. .++.. +..+++|+.|++++|.+++..+.
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChh
Confidence 7666666677777777777777777655554333 567777777777775 55555 67788888999998888876666
Q ss_pred hhcC------CCCCcEEECCCCcCCc--cCCccccCCCCCcEEECCCCc
Q 039739 548 WVDG------LSQLSHLILGHNNLEG--EVPVQLCKLNQLQLLDLSNNS 588 (628)
Q Consensus 548 ~~~~------l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~~~ 588 (628)
.|.. .+.++.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6643 3778899999998863 456788889999999998875
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=9.9e-31 Score=272.76 Aligned_cols=339 Identities=20% Similarity=0.156 Sum_probs=161.6
Q ss_pred CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhh-hcCC----CCCEEEcccccccc----ccC
Q 039739 107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCL-ANMT----SLRILDVSSNQLTG----SIS 177 (628)
Q Consensus 107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l-~~l~----~L~~L~l~~~~~~~----~l~ 177 (628)
+++|++|++++|.++.......+..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.+.+ .++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 55555555555544321111111234445555555555555543222222 2233 45555555555541 223
Q ss_pred CCCCCCCCcccEEEcccCeeeeecCC----CCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcc
Q 039739 178 SSPLVHLTSIEELYLSNNHFQIPISL----EPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI 253 (628)
Q Consensus 178 ~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 253 (628)
. .+..+++|++|++++|.+...... ......++|++|++++|.+.+.... .
T Consensus 107 ~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------------~ 161 (461)
T 1z7x_W 107 S-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE------------------------P 161 (461)
T ss_dssp H-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH------------------------H
T ss_pred H-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH------------------------H
Confidence 3 355555555555555554321000 0011233455555555544322110 1
Q ss_pred cccccccCCCccEEEccCCcccCcCchhHHh----cCccCcEEEeecCCCCCCC----CcccccCCccCEEEccCCcCCc
Q 039739 254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE----NNTKLRQLSLVNDSLGGPF----QLPIHSHKRLGMLDISNNNFRG 325 (628)
Q Consensus 254 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~ 325 (628)
++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++.. +..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 2344555677777777777765443433322 2346777777766665432 2334456667777777666553
Q ss_pred ccchhhh----hhCCCccEEEcccccCCCc----ccccccCCCCccEEECcCCcccCccchhh----hcCCccccEEEcc
Q 039739 326 HIPVEIG----DVLPSLFSLNISMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHL----VVGCVNLESLALS 393 (628)
Q Consensus 326 ~~~~~~~----~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~ 393 (628)
.....+. ..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+..+..+ ....++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 2222221 1245666666666666532 34445556666666666666542222111 1122466666666
Q ss_pred CCccCCcc----cccccCCCCCcEEEccCccCcCcccccccC-----CCcccEEEccCCcCCC----ccCccccCCCCcc
Q 039739 394 NNSLEGHM----FSRNFNLTNLRWLQLEGNHFVGEIPQSLSK-----CFVLEGLFLNNNSLSG----KIPRWLGNLTRLQ 460 (628)
Q Consensus 394 ~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~ 460 (628)
+|.+++.. +..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 66555432 222334455666666655554332222211 3455555555555543 3344444455555
Q ss_pred eEECCCCcCC
Q 039739 461 HIMMPKNHLE 470 (628)
Q Consensus 461 ~L~l~~~~~~ 470 (628)
+|++++|.+.
T Consensus 402 ~L~l~~N~i~ 411 (461)
T 1z7x_W 402 ELDLSNNCLG 411 (461)
T ss_dssp EEECCSSSCC
T ss_pred EEECCCCCCC
Confidence 5555555444
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.4e-28 Score=241.25 Aligned_cols=250 Identities=30% Similarity=0.438 Sum_probs=155.8
Q ss_pred CccCEEEccCCcCCc--ccchhhhhhCCCccEEEccc-ccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccc
Q 039739 311 KRLGMLDISNNNFRG--HIPVEIGDVLPSLFSLNISM-NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNL 387 (628)
Q Consensus 311 ~~L~~L~l~~~~i~~--~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 387 (628)
.+++.|+++++.+.+ .+|..+.. +++|+.|++++ |.+.+..|..+..+++|++|++++|.+.+.++.. +..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence 356666666666665 55555544 56666666663 5555555666666666666666666655334432 2335566
Q ss_pred cEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCC-cccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739 388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466 (628)
Q Consensus 388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 466 (628)
++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..++ .|++|++++|.+.+..+..+..++ |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 6666666655554555555555666666666555555555555554 555555555555555555555554 55555555
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc
Q 039739 467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS 546 (628)
Q Consensus 467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 546 (628)
|.+.+..+..+..+++|+.|++++|++. +.++. +..+++|+.|++++|.+++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~--~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLA-----------------------FDLGK--VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEEC-----------------------CBGGG--CCCCTTCCEEECCSSCCEECCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCcee-----------------------eecCc--ccccCCCCEEECcCCcccCcCC
Confidence 5555445555555555555555555443 23332 4556788888888888887788
Q ss_pred hhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739 547 DWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589 (628)
Q Consensus 547 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 589 (628)
..+..+++|+.|++++|++++.+|+. .++++|+.+++.+|+.
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 88888888888888888888777776 7788888888888873
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.7e-27 Score=255.36 Aligned_cols=300 Identities=22% Similarity=0.198 Sum_probs=252.9
Q ss_pred cCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccE
Q 039739 285 NNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364 (628)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 364 (628)
.+++++.+++.++.+....+..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|..+..+++|+.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999887766666788999999999999998544445544 899999999999999887888899999999
Q ss_pred EECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc
Q 039739 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 444 (628)
Q Consensus 365 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 444 (628)
|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|++|++++|.
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 999999998 78877777899999999999999888888888999999999999998854 25668899999999998
Q ss_pred CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccc
Q 039739 445 LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGT 524 (628)
Q Consensus 445 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 524 (628)
+. .+...++|+.|++++|.+.... .. ..++|+.|++++|.+++ .+....++.|+.|++++|.+.+..+..
T Consensus 204 l~-----~l~~~~~L~~L~ls~n~l~~~~-~~--~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~- 273 (597)
T 3oja_B 204 LS-----TLAIPIAVEELDASHNSINVVR-GP--VNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHP- 273 (597)
T ss_dssp CS-----EEECCTTCSEEECCSSCCCEEE-CS--CCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGG-
T ss_pred cc-----cccCCchhheeeccCCcccccc-cc--cCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHH-
Confidence 76 3455678999999999987433 22 24789999999999985 344445899999999999997665555
Q ss_pred cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739 525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601 (628)
Q Consensus 525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~ 601 (628)
+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++.+.-+..+.+++
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~ 348 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 348 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence 8899999999999999985 5667788999999999999999 7888899999999999999999865455555555
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.4e-29 Score=271.02 Aligned_cols=424 Identities=15% Similarity=0.091 Sum_probs=264.6
Q ss_pred cEEecCCCCCCCcchhHhhccCCCCceEecccccccc---cccCC--C---------ccccCccceeecccchhhcCcch
Q 039739 34 EYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNG---LVRGQ--G---------FPHFKSLEHLDMEGALIALNTSF 99 (628)
Q Consensus 34 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---~~~~~--~---------~~~l~~L~~L~l~~~~~~~~~~~ 99 (628)
+.+.+..+. .......+.+ +++|++|++++|.... .+|.. . +.++++|++|+++++ .+.+..
T Consensus 53 ~~l~~~~~~-~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~ 128 (592)
T 3ogk_B 53 EHVTMALCY-TATPDRLSRR-FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLD 128 (592)
T ss_dssp CEEEESCGG-GSCHHHHHHH-CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHH
T ss_pred cEEEEeecc-ccChHHHHHh-CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc--EecHHH
Confidence 345555442 2232444555 9999999998864321 12110 1 127899999999999 677777
Q ss_pred hhhhhccCCC-ccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCccccc----CchhhhcCCCCCEEEccccccc
Q 039739 100 LQIIGESMPS-LKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGS----LPWCLANMTSLRILDVSSNQLT 173 (628)
Q Consensus 100 ~~~~~~~~~~-L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 173 (628)
+..++..+++ |++|++++|.. ... ........+++|++|++++|.+.+. ++..+..+++|++|++++|.+.
T Consensus 129 ~~~l~~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 129 LDRLAKARADDLETLKLDKCSGFTTD---GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp HHHHHHHHGGGCCEEEEESCEEEEHH---HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred HHHHHHhccccCcEEECcCCCCcCHH---HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence 7777764555 99999999873 210 1112345889999999999988755 3445678999999999999875
Q ss_pred ----cccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCC
Q 039739 174 ----GSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249 (628)
Q Consensus 174 ----~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 249 (628)
+.++. .+..+++|++|++++|.+.+ .+ ..+..+++|++++++..... .
T Consensus 206 ~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~-------------------------~ 257 (592)
T 3ogk_B 206 KISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNED-------------------------I 257 (592)
T ss_dssp SCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCC-------------------------T
T ss_pred ccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccc-------------------------c
Confidence 23333 45678999999999987763 22 44667788888887642110 0
Q ss_pred CCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCC-cccccCCccCEEEccCCcCCcccc
Q 039739 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQ-LPIHSHKRLGMLDISNNNFRGHIP 328 (628)
Q Consensus 250 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~ 328 (628)
.....+..+..+++|+.+++.+... ..++.. +..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+...
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l 334 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL 334 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH
T ss_pred chHHHHHHhhccccccccCccccch-hHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH
Confidence 0112334566778899998887532 234443 4678889999998887554332 224678888888887 33433333
Q ss_pred hhhhhhCCCccEEEccc-----------ccCCCc-ccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc---
Q 039739 329 VEIGDVLPSLFSLNISM-----------NALDGS-IPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS--- 393 (628)
Q Consensus 329 ~~~~~~~~~L~~L~L~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--- 393 (628)
..+...+++|++|++.+ +.++.. ++.....+++|+.|+++.+.+++.....+...+++|+.|+++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 44444578888888883 334422 222234577788888866666644444444457778888775
Q ss_pred -CCccCCc-----ccccccCCCCCcEEEccCcc--CcCcccccc-cCCCcccEEEccCCcCCCc-cCccccCCCCcceEE
Q 039739 394 -NNSLEGH-----MFSRNFNLTNLRWLQLEGNH--FVGEIPQSL-SKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIM 463 (628)
Q Consensus 394 -~~~l~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 463 (628)
.+.+++. ....+.++++|+.|+++.|. +++..+..+ ..+++|++|++++|.+.+. .+..+.++++|++|+
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 3444432 12224457777777776543 333322223 2366777777777766542 333446667777777
Q ss_pred CCCCcCCCCC-cccccCCCCCCEEEccCCcCcC
Q 039739 464 MPKNHLEGPI-PVEFCQLDWLQILDISDNNISG 495 (628)
Q Consensus 464 l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 495 (628)
+++|.+++.. +.....+++|+.|++++|++++
T Consensus 495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 7777654322 2223456677777777776654
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5e-26 Score=225.66 Aligned_cols=289 Identities=19% Similarity=0.209 Sum_probs=167.7
Q ss_pred CccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEE
Q 039739 263 DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342 (628)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 342 (628)
.++.++++++.+. .+|..+ .+.++.|+++++.+++..+..+..+++|++|++++|.+.+..|..+.. +++|+.|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 4555555555544 333322 245666666666665554445566666666666666665433444433 56666666
Q ss_pred cccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCC--cccccccCCCCCcEEEccCcc
Q 039739 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG--HMFSRNFNLTNLRWLQLEGNH 420 (628)
Q Consensus 343 L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~ 420 (628)
+++|.++ .+|..+. ++|+.|++++|.+. .++...+.++++|+.|++++|.+.. .....+..+++|+.|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 6666655 3333322 56666666666665 4444445556666666666666543 333445566666666666666
Q ss_pred CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCC
Q 039739 421 FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 500 (628)
Q Consensus 421 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 500 (628)
+.. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++.......
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 259 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence 652 333322 56666666666666555566666666666666666666555555666666666666666666322223
Q ss_pred CCCCcccEEecCCCcCcCCCCccccc------cCCCccEEECCCcccCC--ccchhhcCCCCCcEEECCCCc
Q 039739 501 FHPLSVEQVHLSKNMLHGQLKRGTFF------NSYSLVTLDLSYNRLNG--NISDWVDGLSQLSHLILGHNN 564 (628)
Q Consensus 501 ~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 564 (628)
..+++|+.|++++|+++ .++...+. ..++++.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 33566666666666664 33332232 24678888888887753 456778888888888888874
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=9.6e-28 Score=235.31 Aligned_cols=251 Identities=26% Similarity=0.363 Sum_probs=216.8
Q ss_pred ccCcEEEeecCCCCC--CCCcccccCCccCEEEccC-CcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCcc
Q 039739 287 TKLRQLSLVNDSLGG--PFQLPIHSHKRLGMLDISN-NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ 363 (628)
Q Consensus 287 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 363 (628)
.+++.|+++++.+.+ ..+..+..+++|++|++++ +.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999999998 7888999999999999995 8888888988876 89999999999999988999999999999
Q ss_pred EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCC-CCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLT-NLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 442 (628)
Q Consensus 364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 442 (628)
+|++++|.+.+.++..+ ..+++|++|++++|.+++..+..+..++ +|+.|++++|.+.+..|..+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 99999999986666544 4599999999999999877888888888 999999999999988899998887 99999999
Q ss_pred CcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCc
Q 039739 443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKR 522 (628)
Q Consensus 443 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 522 (628)
|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++ .+|.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~p~ 262 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-----------------------TLPQ 262 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-----------------------CCCG
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-----------------------cCCh
Confidence 999988899999999999999999999865554 7788888888888888764 3333
Q ss_pred cccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 523 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
. +..+++|+.|++++|.+++.+|.. +.+++|+.|++++|+..
T Consensus 263 ~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 263 G-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp G-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred H-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 3 666778888888888887777765 77788888888888643
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4e-26 Score=226.47 Aligned_cols=287 Identities=20% Similarity=0.231 Sum_probs=181.2
Q ss_pred CccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEE
Q 039739 263 DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342 (628)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 342 (628)
.++.++++++.+. .+|..+ .++++.|+++++.+....+..+..+++|++|++++|.+.+..+..+.. +++|+.|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence 4566666666554 444332 246666666666666555555666677777777777666444444443 66777777
Q ss_pred cccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCC--cccccccCCCCCcEEEccCcc
Q 039739 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG--HMFSRNFNLTNLRWLQLEGNH 420 (628)
Q Consensus 343 L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~ 420 (628)
+++|.+. .+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.++. ..+..+..+ +|+.|++++|.
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 7777666 3443332 56777777777665 5555555566777777777776643 333444444 67777777777
Q ss_pred CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC-
Q 039739 421 FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS- 499 (628)
Q Consensus 421 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~- 499 (628)
+.+ +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|++. ..|.
T Consensus 184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 663 443332 56777777777776666666777777777777777777666666777777777777777776 3333
Q ss_pred CCCCCcccEEecCCCcCcCCCCcccccc------CCCccEEECCCcccC--CccchhhcCCCCCcEEECCCCc
Q 039739 500 CFHPLSVEQVHLSKNMLHGQLKRGTFFN------SYSLVTLDLSYNRLN--GNISDWVDGLSQLSHLILGHNN 564 (628)
Q Consensus 500 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 564 (628)
...+++|+.|++++|+++ .++...+.. .++|+.|++++|.+. ...+..|..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 333667777777777775 333332332 467899999999876 5677788889999999998874
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1e-28 Score=266.23 Aligned_cols=443 Identities=16% Similarity=0.112 Sum_probs=239.2
Q ss_pred EEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCC-c-------------chhHhhccCCCCceEecccccccccccC
Q 039739 9 TLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHI-S-------------LLQSIASIFPSLKNLSMIGCEVNGLVRG 74 (628)
Q Consensus 9 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-------------~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 74 (628)
.++++.+.... ....+.++++|++|+++++.... . ....+...+++|++|++++|.+....+.
T Consensus 47 ~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 47 KVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp EEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred EEeeccccccC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence 45555443322 33557777888888887764211 0 1223333378888888888776654433
Q ss_pred CCcc-ccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCc--ccc-
Q 039739 75 QGFP-HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYND--LRG- 150 (628)
Q Consensus 75 ~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~- 150 (628)
.+. .+++|++|++++|. .+.......+...+++|++|++++|.+...+..........+++|++|++++|. +..
T Consensus 124 -~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (594)
T 2p1m_B 124 -LIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS 201 (594)
T ss_dssp -HHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH
T ss_pred -HHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH
Confidence 333 57888888888773 222222333332388888888888876432222222334467788888888875 221
Q ss_pred cCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCee-------eeecCCCCcCCCCcccEEe-ccCCcc
Q 039739 151 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF-------QIPISLEPFFNHSRLKSFY-ADNNEI 222 (628)
Q Consensus 151 ~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~~l~~l~~L~~L~-l~~~~~ 222 (628)
.+...+..+++|++|++++|...+.++. .+..+++|++|+++.+.. .. .. ..+.++++|+.+. +...
T Consensus 202 ~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~-~~l~~~~~L~~Ls~~~~~-- 276 (594)
T 2p1m_B 202 ALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSG-LS-VALSGCKELRCLSGFWDA-- 276 (594)
T ss_dssp HHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHH-HH-HHHHTCTTCCEEECCBTC--
T ss_pred HHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHH-HH-HHHhcCCCcccccCCccc--
Confidence 1222334578888888888732224554 566778888888665531 11 00 1344556666552 2111
Q ss_pred cccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCC
Q 039739 223 NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP 302 (628)
Q Consensus 223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 302 (628)
....++..+..+++|++|++++|.+.+.....++..+++|++|++.+| +.+.
T Consensus 277 ---------------------------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~ 328 (594)
T 2p1m_B 277 ---------------------------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA 328 (594)
T ss_dssp ---------------------------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred ---------------------------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence 011233333455666666666666543333344456666666666655 2211
Q ss_pred CCcc-cccCCccCEEEccC---------CcCCcccchhhhhhCCCccEEEcccccCCCccccccc-CCCCccEEECc--C
Q 039739 303 FQLP-IHSHKRLGMLDISN---------NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG-NMKFLQILDLS--N 369 (628)
Q Consensus 303 ~~~~-l~~~~~L~~L~l~~---------~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~--~ 369 (628)
.... ...+++|++|++.+ +.+++.....+...+++|+.|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 1111 12356666666632 2333222233333467777776666666544333333 46677777776 2
Q ss_pred ----CcccCccc-----hhhhcCCccccEEEccCCccCCcccccccC-CCCCcEEEccCccCcCcccccc-cCCCcccEE
Q 039739 370 ----NHLTGEIP-----EHLVVGCVNLESLALSNNSLEGHMFSRNFN-LTNLRWLQLEGNHFVGEIPQSL-SKCFVLEGL 438 (628)
Q Consensus 370 ----~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 438 (628)
+.++ ..+ ...+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|
T Consensus 409 ~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 409 PKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp TTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred CCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence 2333 111 11234567777777765 454444444443 6677777777777654433333 456777777
Q ss_pred EccCCcCCCccCc-cccCCCCcceEECCCCcCCCCCcccc-cCCCCCCEEEccCC
Q 039739 439 FLNNNSLSGKIPR-WLGNLTRLQHIMMPKNHLEGPIPVEF-CQLDWLQILDISDN 491 (628)
Q Consensus 439 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 491 (628)
++++|.+.+.... .+..+++|++|++++|.++......+ ..+|+|+...+..+
T Consensus 487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 7777776433222 33446777777777776643222223 34566665555544
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=5.8e-26 Score=227.33 Aligned_cols=260 Identities=20% Similarity=0.207 Sum_probs=148.8
Q ss_pred CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEE
Q 039739 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESL 390 (628)
Q Consensus 311 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 390 (628)
++|++|++++|.+. .++......+++|+.|++++|.+++..+..+..+++|++|++++|.+. .++...+.++++|++|
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence 35555666555555 233322222555555555555555444445555555555555555554 4444444445555555
Q ss_pred EccCCccCCccc-ccccCCCCCcEEEccCcc-CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739 391 ALSNNSLEGHMF-SRNFNLTNLRWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH 468 (628)
Q Consensus 391 ~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 468 (628)
++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 555555554332 244455555555555552 333334445555555555555555554445555555555555555555
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC----c
Q 039739 469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG----N 544 (628)
Q Consensus 469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~ 544 (628)
+....+..+..+++|+.|++++|.+.+..+..+ . .......++.++++++.+.+ .
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-------------------~--~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-------------------S--TGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cccchhhhhhhcccccEEECCCCcccccccccc-------------------c--cccccchhhccccccccccCcchhh
Confidence 542222223345555555555555443221110 0 02234567777887777764 3
Q ss_pred cchhhcCCCCCcEEECCCCcCCccCCcc-ccCCCCCcEEECCCCccccccc
Q 039739 545 ISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 545 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~~ip 594 (628)
+|..+..+++|+.|++++|+++ .+|.. |.++++|++|++++|++.+..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6778899999999999999999 67766 5899999999999999997555
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=3.5e-25 Score=217.12 Aligned_cols=247 Identities=21% Similarity=0.204 Sum_probs=138.7
Q ss_pred CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCcc---chhhhcCCccccEE
Q 039739 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI---PEHLVVGCVNLESL 390 (628)
Q Consensus 314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L 390 (628)
+.++.+++.++ .+|..+ .+++++|++++|.+....+..+..+++|+.|++++|.+. .. +.. +..+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQS-DFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHH-HHSCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccc-cccccccCEE
Confidence 35566655554 555433 246666666666666333334556666666666666554 22 122 2235556666
Q ss_pred EccCCccCCcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcC
Q 039739 391 ALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469 (628)
Q Consensus 391 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 469 (628)
++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 666555542 22334455555555555555543322 3444555555555555555444444455555555555555554
Q ss_pred CC-CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739 470 EG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW 548 (628)
Q Consensus 470 ~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 548 (628)
.+ ..|..+..+++|+.|++++|++. +..+. .+..+++|+.|++++|.+++..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLE-----------------------QLSPT-AFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCC-----------------------EECTT-TTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred ccccchhHHhhCcCCCEEECCCCCcC-----------------------CcCHH-HhcCCCCCCEEECCCCccCccChhh
Confidence 43 23444444555555555554444 22222 2666777777777777777666666
Q ss_pred hcCCCCCcEEECCCCcCCccCCccccCCC-CCcEEECCCCcccc
Q 039739 549 VDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNSLHG 591 (628)
Q Consensus 549 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~~~ 591 (628)
+..+++|+.|++++|++++..|..+..++ +|++|++++|++..
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 77777777777777777766777777774 77777777777764
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=223.63 Aligned_cols=247 Identities=24% Similarity=0.240 Sum_probs=150.1
Q ss_pred ccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEE
Q 039739 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLA 391 (628)
Q Consensus 312 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 391 (628)
....++..+..+. .+|..+ .++++.|++++|.+....+..+..+++|+.|++++|.+. .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3556777776665 666654 357777888887777666667777777777777777776 55555566677777777
Q ss_pred ccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCC-ccCccccCCCCcceEECCCCcCC
Q 039739 392 LSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG-KIPRWLGNLTRLQHIMMPKNHLE 470 (628)
Q Consensus 392 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 470 (628)
+++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.... ..+..|.++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 77777766555566677777777777777765555566667777777777643322 23335666666666666666665
Q ss_pred CCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhc
Q 039739 471 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD 550 (628)
Q Consensus 471 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 550 (628)
.. | .+..+++|+.|++++|++.+..+.. +..+++|+.|++++|++++..+..|.
T Consensus 199 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 199 EI-P-NLTPLIKLDELDLSGNHLSAIRPGS------------------------FQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp SC-C-CCTTCSSCCEEECTTSCCCEECTTT------------------------TTTCTTCCEEECTTCCCCEECTTSST
T ss_pred cc-c-ccCCCcccCEEECCCCccCccChhh------------------------hccCccCCEEECCCCceeEEChhhhc
Confidence 32 2 3556666666666666655443333 44445555555555555444444455
Q ss_pred CCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739 551 GLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589 (628)
Q Consensus 551 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 589 (628)
.+++|+.|+|++|+++...++.|..+++|+.|++++|++
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 555555555555555533344444455555555555543
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=7.3e-25 Score=216.03 Aligned_cols=235 Identities=20% Similarity=0.208 Sum_probs=140.4
Q ss_pred CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414 (628)
Q Consensus 335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 414 (628)
.+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 356777777777766 55555666667777777776665 555433 34666666666666665 334455566666666
Q ss_pred EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
++++|...+.+|..+.. . .....+.++++|++|++++|.+. ..|..+..+++|++|++++|++.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 66666555555544332 0 00112334556666666666555 44555556666666666666555
Q ss_pred CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcccc
Q 039739 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC 574 (628)
Q Consensus 495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~ 574 (628)
+..+....+++|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+.
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 32222222444555555555544455544 66677777777777777767777777777777777777777777777777
Q ss_pred CCCCCcEEECCCCccc
Q 039739 575 KLNQLQLLDLSNNSLH 590 (628)
Q Consensus 575 ~l~~L~~L~l~~~~~~ 590 (628)
++++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 7777777777655444
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.2e-24 Score=223.39 Aligned_cols=246 Identities=22% Similarity=0.203 Sum_probs=147.0
Q ss_pred cCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEc
Q 039739 313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL 392 (628)
Q Consensus 313 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 392 (628)
...++.++..++ .+|..+ .++++.|++++|.+.+..+..|..+++|+.|++++|.+. .++...+.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 456666666665 566544 346777777777777666666777777777777777665 444444555667777777
Q ss_pred cCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCC
Q 039739 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEG 471 (628)
Q Consensus 393 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 471 (628)
++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|...+. .+..+.++++|++|++++|.+.+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 77666655555566666666666666666644444556666666666665433222 22345555555555555555543
Q ss_pred CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739 472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG 551 (628)
Q Consensus 472 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 551 (628)
. | .+..+++|+.|++++|++.+.. + ..+..+++|+.|++++|++++..+..|..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~-----------------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIR-----------------------P-GSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEEC-----------------------G-GGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred c-c-cccccccccEEECcCCcCcccC-----------------------c-ccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 2 1 2445555555555555544322 2 22566666666666666666555666666
Q ss_pred CCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739 552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589 (628)
Q Consensus 552 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 589 (628)
+++|+.|++++|+++...++.|..+++|++|++++|++
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 66666666666666644455566666666666666654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.2e-25 Score=215.85 Aligned_cols=282 Identities=22% Similarity=0.214 Sum_probs=217.1
Q ss_pred cEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCc--ccccccCCCCccEEEC
Q 039739 290 RQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS--IPSSFGNMKFLQILDL 367 (628)
Q Consensus 290 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l 367 (628)
+.++.++..++... .. ..+++++|++++|.+. .++...+..+++|+.|++++|.+... .+..+..+++|+.|++
T Consensus 10 ~~l~c~~~~l~~ip-~~--~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCC-CC--CCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45677666655422 22 2368999999999998 77776655689999999999998733 3566778999999999
Q ss_pred cCCcccCccchhhhcCCccccEEEccCCccCCccc-ccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC
Q 039739 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF-SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446 (628)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 446 (628)
++|.+. .++.. +..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999987 56654 4569999999999999887654 56788999999999999998888888999999999999999987
Q ss_pred C-ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccc
Q 039739 447 G-KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTF 525 (628)
Q Consensus 447 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 525 (628)
+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.. ...+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~ 219 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD------------------------TFPY 219 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC------------------------SGGG
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC------------------------hhhc
Confidence 6 57888999999999999999999877888999999999999999887422 2225
Q ss_pred ccCCCccEEECCCcccCCccchhhcCCC-CCcEEECCCCcCCccCC--ccccCCCCCcEEECCCCcccccccccccccc
Q 039739 526 FNSYSLVTLDLSYNRLNGNISDWVDGLS-QLSHLILGHNNLEGEVP--VQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601 (628)
Q Consensus 526 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~--~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~ 601 (628)
..+++|+.|++++|.+++..+..+..++ +|+.|++++|+++..-. ....-+...+.+.+..+.+.-..|+.++..+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 5667778888888877777777777774 78888888887763311 1112223344455566666666666666544
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=220.58 Aligned_cols=284 Identities=18% Similarity=0.166 Sum_probs=222.6
Q ss_pred cCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCcc
Q 039739 260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339 (628)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 339 (628)
.|+.....+.+++.+. .+|..+ .++|++|+++++.+++.....+..+++|++|++++|.+.+..+..+.. +++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCC
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCC
Confidence 4555566788887776 667654 368999999999998876668899999999999999998544555554 89999
Q ss_pred EEEcccccCCCcccccccCCCCccEEECcCCcccCccch-hhhcCCccccEEEccCCc-cCCcccccccCCCCCcEEEcc
Q 039739 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE-HLVVGCVNLESLALSNNS-LEGHMFSRNFNLTNLRWLQLE 417 (628)
Q Consensus 340 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~ 417 (628)
.|++++|.+++..+..+..+++|++|++++|++. .++. ..+..+++|++|++++|. +.......+..+++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999999665556899999999999999998 6665 567789999999999994 665556778899999999999
Q ss_pred CccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCccccc---CCCCCCEEEccCCcCc
Q 039739 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC---QLDWLQILDISDNNIS 494 (628)
Q Consensus 418 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~ 494 (628)
+|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+. ..+.++.++++++.+.
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 9999988889999999999999999998754444566789999999999999865544332 3455566666555443
Q ss_pred CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccC
Q 039739 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEV 569 (628)
Q Consensus 495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 569 (628)
+ +.+ ..++.. +..+++|+.|++++|+++..++..|+.+++|++|++++|++++..
T Consensus 263 ~------------------~~l-~~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 263 D------------------ESL-FQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp H------------------HHH-HHHHHH-HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred C------------------cch-hhhHHH-HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 2 111 123433 677889999999999998544444688999999999999988543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.9e-24 Score=209.40 Aligned_cols=214 Identities=24% Similarity=0.190 Sum_probs=92.3
Q ss_pred CccccEEEccCCccCCcccccccCCCCCcEEEccCcc-CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceE
Q 039739 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462 (628)
Q Consensus 384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 462 (628)
+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 3333333333333333323333334444444444443 332223334444444444444444443333344444444444
Q ss_pred ECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCccc
Q 039739 463 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL 541 (628)
Q Consensus 463 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~ 541 (628)
++++|.+....+..+..+++|+.|++++|+++...+..+. +++|+.|++++|.+.+..+.. +..+++|+.|++++|.+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcC
Confidence 4444444433333344444444444444444422222221 333333333333333222222 55556666666666666
Q ss_pred CCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccc
Q 039739 542 NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599 (628)
Q Consensus 542 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~ 599 (628)
++..+..+..+++|+.|++++|++...-+. ..-...++.+....+.+....|+.+..
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred CcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence 655555566666666666666665522211 011122333444555555555555444
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.4e-24 Score=214.08 Aligned_cols=212 Identities=22% Similarity=0.287 Sum_probs=155.8
Q ss_pred ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEEC
Q 039739 385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM 464 (628)
Q Consensus 385 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 464 (628)
++++.|++++|.+. ..+..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44445555554444 22333444555555555555554 44444555555555555555554 44445555555555555
Q ss_pred CCCcCCCCCccc---------ccCCCCCCEEEccCCcCcCCCCCCC-CCCcccEEecCCCcCcCCCCccccccCCCccEE
Q 039739 465 PKNHLEGPIPVE---------FCQLDWLQILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534 (628)
Q Consensus 465 ~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 534 (628)
++|.+.+..|.. +..+++|++|++++|.++ ..|..+ .+++|+.|++++|.+. .++.. +..+++|+.|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEE
Confidence 555444444444 445999999999999998 555544 4889999999999997 45555 8899999999
Q ss_pred ECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccccccccc
Q 039739 535 DLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTL 602 (628)
Q Consensus 535 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~ 602 (628)
++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+.++++|++|++++|++.+.+|+.+.+++-
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999774
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=6.7e-24 Score=205.60 Aligned_cols=227 Identities=23% Similarity=0.192 Sum_probs=199.9
Q ss_pred cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 442 (628)
Q Consensus 363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 442 (628)
+.++.++..+. .+|... .++|++|++++|.++......+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 57778887776 666543 57899999999999887777788999999999999999877788999999999999999
Q ss_pred Cc-CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCC
Q 039739 443 NS-LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQL 520 (628)
Q Consensus 443 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~ 520 (628)
|. +....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++....+..+. +++|+.|++++|++. .+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence 97 7766688899999999999999999988888899999999999999999976666554 889999999999996 55
Q ss_pred CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip 594 (628)
+...+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..++.+..+++|++|++++|++....+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 55558889999999999999998889999999999999999999997666779999999999999999985433
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.3e-26 Score=249.93 Aligned_cols=430 Identities=15% Similarity=0.116 Sum_probs=286.0
Q ss_pred CCCCCCEEeCCCCCC-CCccc------------hhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccc-cc
Q 039739 3 SFPSLNTLYLSSNNF-TDIAT------------ATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGC-EV 68 (628)
Q Consensus 3 ~l~~L~~L~l~~~~~-~~~~~------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~ 68 (628)
++++|++|+++++.. .++.. +......+++|++|++++|.+++..+..+...+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 588999999999853 22211 12335678999999999999998888888744999999999999 44
Q ss_pred cccccCCCccccCccceeecccchhhcCcchh---hhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccC
Q 039739 69 NGLVRGQGFPHFKSLEHLDMEGALIALNTSFL---QIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAY 145 (628)
Q Consensus 69 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 145 (628)
........+.++++|++|++++|. +.+... ..+...+++|++|++++|. ..-........+..+++|++|++++
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD--VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE--EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc--cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 432222234589999999999994 333322 2333338899999999886 1100001112235679999999999
Q ss_pred CcccccCchhhhcCCCCCEEEcccc-------ccccccCCCCCCCCCcccEE-EcccCeeeeecCCCCcCCCCcccEEec
Q 039739 146 NDLRGSLPWCLANMTSLRILDVSSN-------QLTGSISSSPLVHLTSIEEL-YLSNNHFQIPISLEPFFNHSRLKSFYA 217 (628)
Q Consensus 146 ~~~~~~~~~~l~~l~~L~~L~l~~~-------~~~~~l~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~l~~l~~L~~L~l 217 (628)
|.....++..+..+++|++|++..+ .+. .++. .+.++++|+.+ .+..... ......+..+++|++|++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~--~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP--AYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG--GGGGGGHHHHTTCCEEEC
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch--hhHHHHHHhhCCCCEEEc
Confidence 9443357888889999999996554 333 3333 46778888888 3332211 111112235788999999
Q ss_pred cCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccC---------CcccCcCchhHHhcCcc
Q 039739 218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH---------IKMNGEFPTWLLENNTK 288 (628)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~ 288 (628)
++|.+.+....... ....+|++|.+. .+.....++.....+++|++|++.+ +.+.+.....+...+++
T Consensus 297 ~~~~l~~~~l~~~~--~~~~~L~~L~l~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 297 SYATVQSYDLVKLL--CQCPKLQRLWVL-DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp TTCCCCHHHHHHHH--TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred cCCCCCHHHHHHHH--hcCCCcCEEeCc-CccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 88886543322111 122478888884 3322222333344689999999843 34444444455566899
Q ss_pred CcEEEeecCCCCCCCCcccc-cCCccCEEEcc--C----CcCCcccc-----hhhhhhCCCccEEEcccccCCCcccccc
Q 039739 289 LRQLSLVNDSLGGPFQLPIH-SHKRLGMLDIS--N----NNFRGHIP-----VEIGDVLPSLFSLNISMNALDGSIPSSF 356 (628)
Q Consensus 289 L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~i~~~~~-----~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 356 (628)
|+.|.+..+.+++.....+. .+++|+.|+++ + +.++ ..| ..+...+++|+.|++++ .++......+
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 99998888877664444443 58999999998 3 3444 221 12234588999999977 5555444445
Q ss_pred cC-CCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccc-cccCCCCCcEEEccCccCcCcccccc-cCCC
Q 039739 357 GN-MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFS-RNFNLTNLRWLQLEGNHFVGEIPQSL-SKCF 433 (628)
Q Consensus 357 ~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 433 (628)
.. +++|+.|++++|.+++.....+..++++|++|++++|.+++.... ....+++|+.|++++|+++......+ ..++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp 531 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence 44 889999999999887555555556689999999999998654443 33468999999999998864433334 4577
Q ss_pred cccEEEccCCc
Q 039739 434 VLEGLFLNNNS 444 (628)
Q Consensus 434 ~L~~L~l~~~~ 444 (628)
.++...+..+.
T Consensus 532 ~l~i~~~~~~~ 542 (594)
T 2p1m_B 532 KLNVEVIDERG 542 (594)
T ss_dssp TEEEEEECSSS
T ss_pred CCEEEEecCCC
Confidence 88776666543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2e-23 Score=215.37 Aligned_cols=247 Identities=24% Similarity=0.217 Sum_probs=199.7
Q ss_pred cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367 (628)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 367 (628)
....++..+..++. .+..+ .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|+.|++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 35667766665553 22222 36899999999999844444554 4899999999999999777788999999999999
Q ss_pred cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCc-ccccccCCCcccEEEccCCcCC
Q 039739 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE-IPQSLSKCFVLEGLFLNNNSLS 446 (628)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 446 (628)
++|++. .++...+..+++|++|++++|.+.......+..+++|+.|++++|...+. .+..+..+++|++|++++|.+.
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999998 77777778899999999999999887777888999999999999654434 4457889999999999999997
Q ss_pred CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCcccc
Q 039739 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTF 525 (628)
Q Consensus 447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~ 525 (628)
.++ .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..+. +++|+.|++++|+++ .++...+
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 275 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTT
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHh
Confidence 444 488899999999999999988888999999999999999999876665554 677777777777775 4444446
Q ss_pred ccCCCccEEECCCcccC
Q 039739 526 FNSYSLVTLDLSYNRLN 542 (628)
Q Consensus 526 ~~~~~L~~L~l~~~~~~ 542 (628)
..+++|+.|++++|.+.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 67777777777777654
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2e-23 Score=216.09 Aligned_cols=247 Identities=23% Similarity=0.211 Sum_probs=200.2
Q ss_pred cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367 (628)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 367 (628)
....++..+..++. .+.. -.+.++.|++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQG--IPSNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSS-CCSC--CCTTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCc-cCCC--CCCCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 34566766665554 2222 2368999999999998555555554 899999999999999877788999999999999
Q ss_pred cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcc-cccccCCCcccEEEccCCcCC
Q 039739 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEI-PQSLSKCFVLEGLFLNNNSLS 446 (628)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 446 (628)
++|.+. .++...+..+++|++|++++|.+.......+..+++|+.|++++|...+.+ +..+..+++|++|++++|.+.
T Consensus 131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999998 777777888999999999999998777778889999999999996554444 456889999999999999997
Q ss_pred CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCcccc
Q 039739 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTF 525 (628)
Q Consensus 447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~ 525 (628)
+. + .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++....+..+. +++|+.|++++|+++ .++...+
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 286 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSS
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHh
Confidence 43 3 588899999999999999988899999999999999999999876665554 667777777777775 4444446
Q ss_pred ccCCCccEEECCCcccC
Q 039739 526 FNSYSLVTLDLSYNRLN 542 (628)
Q Consensus 526 ~~~~~L~~L~l~~~~~~ 542 (628)
..+++|+.|++++|.+.
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 66777777777777654
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=9.3e-23 Score=216.10 Aligned_cols=274 Identities=26% Similarity=0.273 Sum_probs=188.5
Q ss_pred cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367 (628)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 367 (628)
+++.|+++++.++. .+..+. ++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|. .+++|+.|++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 45566666555552 222222 56666666666665 4554 2566777777777666 3343 4567777777
Q ss_pred cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCC
Q 039739 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 447 (628)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 447 (628)
++|.+. .++. .+++|+.|++++|.++.... .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+..
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 777665 4444 35677777777776654221 24677777777777663 332 24567777777777763
Q ss_pred ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739 448 KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN 527 (628)
Q Consensus 448 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 527 (628)
++ ..+++|+.|++++|.+.+ .|. .+++|+.|++++|.+.. .+.. +++|+.|++++|.+++ ++ ..
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~--~~~L~~L~Ls~N~L~~-lp----~~ 239 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLTS-LP----VL 239 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSC-CC----CC
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC--CCCCCEEEccCCccCc-CC----CC
Confidence 33 446778888888887774 232 24678888888887773 3332 4778888888888863 54 33
Q ss_pred CCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccccccccc
Q 039739 528 SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYN 607 (628)
Q Consensus 528 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~~~~ 607 (628)
+++|+.|++++|+++. +|. .+++|+.|++++|+++ .+|..+.++++|+.|++++|++++.+|+.+..++....+.
T Consensus 240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~ 314 (622)
T 3g06_A 240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHSTTCC
T ss_pred CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccccccC
Confidence 5789999999999984 444 6789999999999999 7899999999999999999999999999999887554443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2e-25 Score=219.51 Aligned_cols=266 Identities=18% Similarity=0.173 Sum_probs=184.0
Q ss_pred cCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEc
Q 039739 313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL 392 (628)
Q Consensus 313 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 392 (628)
++..+++.+.+. ..+..+...+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .+. +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEEC
Confidence 334444444443 3333444446678888888887776666677778888888888887763 332 556778888888
Q ss_pred cCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC
Q 039739 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472 (628)
Q Consensus 393 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 472 (628)
++|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 877765422 347788888888877654332 356788888888888766666777788888888888887765
Q ss_pred Ccccc-cCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739 473 IPVEF-CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG 551 (628)
Q Consensus 473 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 551 (628)
.+..+ ..+++|++|++++|.+++. +....+++|+.|++++|++. .++.. +..+++|+.|++++|.++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCC-cchhh-hcccCcccEEECcCCccc-chhhHhhc
Confidence 55555 3678888888888887744 33334677777777777775 44444 677788888888888887 45667778
Q ss_pred CCCCcEEECCCCcCC-ccCCccccCCCCCcEEECCCC-ccccccc
Q 039739 552 LSQLSHLILGHNNLE-GEVPVQLCKLNQLQLLDLSNN-SLHGSIP 594 (628)
Q Consensus 552 l~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~~-~~~~~ip 594 (628)
+++|+.|++++|++. +..|..+..+++|+.+++.++ .+.+..|
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 888888888888887 666777888888888888744 3343333
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=7.1e-25 Score=215.03 Aligned_cols=249 Identities=24% Similarity=0.209 Sum_probs=145.6
Q ss_pred cCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCC-Cccccccc-------CCCCccEEECcCCcccCccchhh
Q 039739 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD-GSIPSSFG-------NMKFLQILDLSNNHLTGEIPEHL 380 (628)
Q Consensus 309 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~ 380 (628)
..++|+.+++++|.+ .+|..+... ++.|++++|.+. ...+..+. .+++|++|++++|.+.+.++...
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345566666666666 556555442 666666666653 22333332 45666666666666665555443
Q ss_pred h-cCCccccEEEccCCccCCcccccccCC-----CCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc--cCcc
Q 039739 381 V-VGCVNLESLALSNNSLEGHMFSRNFNL-----TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK--IPRW 452 (628)
Q Consensus 381 ~-~~~~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~ 452 (628)
+ ..+++|++|++++|.+++. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 2 4566666666666666554 3334333 6667777776666655556666666677777766665432 1222
Q ss_pred c--cCCCCcceEECCCCcCCCCC---cccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739 453 L--GNLTRLQHIMMPKNHLEGPI---PVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN 527 (628)
Q Consensus 453 ~--~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 527 (628)
+ ..+++|++|++++|.+.... ...+..+++|+.|++++|++.+. .+...+..
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~~ 251 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA-----------------------AGAPSCDW 251 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-----------------------CCCSCCCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc-----------------------cchhhhhh
Confidence 2 56666777777776665211 12234566666666666666543 22222444
Q ss_pred CCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739 528 SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 528 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 591 (628)
+++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|. +..+++|++|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCCCCC
Confidence 566777777777666 4455444 667777777777763 355 6677777777777777663
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4e-24 Score=210.20 Aligned_cols=248 Identities=23% Similarity=0.172 Sum_probs=204.4
Q ss_pred ccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEcc
Q 039739 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417 (628)
Q Consensus 338 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 417 (628)
++..++..+.+.......+..+++|+.|++++|.+. .++...+..+++|++|++++|.+++... +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344455555554444455667789999999999998 5665556779999999999999876443 7889999999999
Q ss_pred CccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCC
Q 039739 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497 (628)
Q Consensus 418 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 497 (628)
+|.+.+. ...++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998742 2448999999999999855443 3688999999999999887888999999999999999998766
Q ss_pred CCCC--CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccC
Q 039739 498 PSCF--HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCK 575 (628)
Q Consensus 498 ~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~ 575 (628)
+..+ .+++|+.|++++|.+.+. +. ...+++|+.|++++|++++. +..+..+++|+.|++++|+++ .+|..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 6554 378999999999999643 33 33589999999999999954 455999999999999999999 78999999
Q ss_pred CCCCcEEECCCCccc-ccccccccccc
Q 039739 576 LNQLQLLDLSNNSLH-GSIPLCLDNTT 601 (628)
Q Consensus 576 l~~L~~L~l~~~~~~-~~ip~~~~~~~ 601 (628)
+++|+.|++++|++. +.+|..+.+++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccc
Confidence 999999999999999 77888777643
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6.5e-23 Score=213.23 Aligned_cols=235 Identities=20% Similarity=0.169 Sum_probs=151.3
Q ss_pred CCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEE
Q 039739 336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415 (628)
Q Consensus 336 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 415 (628)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 367778887777776666677777788888888777763333 455777777777777765422 237778888
Q ss_pred ccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCccccc-CCCCCCEEEccCCcCc
Q 039739 416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNIS 494 (628)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~ 494 (628)
+++|.+.+..+. .+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888777654332 346778888888877766677777778888888888877766666665 6778888888887776
Q ss_pred CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC-ccCCccc
Q 039739 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE-GEVPVQL 573 (628)
Q Consensus 495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~l 573 (628)
+. +....+++|+.|++++|.+++ +++. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +..|..+
T Consensus 183 ~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-KGQVVFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-ECCCCCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-cccccCCCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 43 222235555555555555542 3333 5555666666666666553 4445555566666666666555 3445555
Q ss_pred cCCCCCcEEECC
Q 039739 574 CKLNQLQLLDLS 585 (628)
Q Consensus 574 ~~l~~L~~L~l~ 585 (628)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 555555555553
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.2e-21 Score=207.63 Aligned_cols=269 Identities=23% Similarity=0.288 Sum_probs=209.0
Q ss_pred CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739 262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL 341 (628)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 341 (628)
.+++.|+++++.+. .+|..+. ++|+.|++++|.++.... .+++|++|++++|.++ .+|. .+++|+.|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 35788888888877 6665542 788889998888774322 5688999999999887 5665 36889999
Q ss_pred EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739 342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421 (628)
Q Consensus 342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 421 (628)
++++|.+++ +|. .+++|+.|++++|+++ .++. .+++|++|++++|.+++.. . .+++|+.|++++|.+
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCC
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCC
Confidence 999998884 443 5678999999999887 5664 2588999999999887532 1 357899999999988
Q ss_pred cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 501 (628)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 501 (628)
++ +| ..+++|++|++++|.+.+ ++. ..++|+.|++++|.+.. .|. .+++|+.|++++|++++ .| .
T Consensus 174 ~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp--~ 238 (622)
T 3g06_A 174 TS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP--V 238 (622)
T ss_dssp SC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC--C
T ss_pred CC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC--C
Confidence 74 45 456889999999998874 333 24789999999998884 332 35889999999998885 44 3
Q ss_pred CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCC
Q 039739 502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 577 (628)
Q Consensus 502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~ 577 (628)
.+++|+.|++++|.++ .++. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4688999999999986 5554 4688999999999998 6688899999999999999999988887766544
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.5e-21 Score=185.64 Aligned_cols=201 Identities=26% Similarity=0.296 Sum_probs=104.7
Q ss_pred ccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEcc
Q 039739 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN 441 (628)
Q Consensus 362 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 441 (628)
.+.++++++.++ .+|..+ .+++++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 444555555444 344322 2445555555555554444445555555566655555554333444555566666666
Q ss_pred CCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCC
Q 039739 442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLK 521 (628)
Q Consensus 442 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 521 (628)
+|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------------------ 149 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP------------------------ 149 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC------------------------
Confidence 65555444445555666666666666665555555556666666666666554322
Q ss_pred ccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739 522 RGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 522 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
...+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|++.
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 222444455555555555555444444555555555555555555333334555555555555555543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1e-21 Score=189.27 Aligned_cols=208 Identities=24% Similarity=0.195 Sum_probs=121.7
Q ss_pred CCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEE
Q 039739 360 KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLF 439 (628)
Q Consensus 360 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 439 (628)
++|+.|++++|.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35666666666655 44433344456666666666655544444555556666666666655544445555555666666
Q ss_pred ccCCcCCCccCccccCCCCcceEECCCCcCCCC-CcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcC
Q 039739 440 LNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP-IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHG 518 (628)
Q Consensus 440 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 518 (628)
+++|.+.+..+..+.++++|++|++++|.+... .|..+..+++|+.|++++|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~----------------------- 163 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS----------------------- 163 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-----------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-----------------------
Confidence 665555544444455555555555555555532 24455555555555555555442
Q ss_pred CCCccccccCCCcc----EEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccc
Q 039739 519 QLKRGTFFNSYSLV----TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSI 593 (628)
Q Consensus 519 ~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~i 593 (628)
++...+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|++++..+..|..+++|++|++++|++....
T Consensus 164 -~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 164 -IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp -ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred -CCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 2222244444454 778888877754444443 347888888888887554555677888888888888887543
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.2e-21 Score=187.89 Aligned_cols=213 Identities=23% Similarity=0.234 Sum_probs=131.0
Q ss_pred cCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCccc
Q 039739 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLE 436 (628)
Q Consensus 357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 436 (628)
..+++|+.|+++++.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34455666666655554 3332 23355555555555555431 2344455555555555555443344444445555
Q ss_pred EEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739 437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML 516 (628)
Q Consensus 437 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 516 (628)
+|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+ ++|+.|++++|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----------------------~~L~~L~l~~n~l 169 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-----------------------TNLTELDLSYNQL 169 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------------------TTCCEEECCSSCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-----------------------ccCCEEECCCCCc
Confidence 55555554443333344444444444444444443333334444 4555555555555
Q ss_pred cCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccc
Q 039739 517 HGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC 596 (628)
Q Consensus 517 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~ 596 (628)
+ .++...+..+++|+.|++++|++++.++..+..+++|+.|++++|++.+ .+++|+.+++++|+++|.+|..
T Consensus 170 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 170 Q-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred C-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 4 3344447788999999999999998888888999999999999998873 3568899999999999999999
Q ss_pred ccccccccc
Q 039739 597 LDNTTLHES 605 (628)
Q Consensus 597 ~~~~~~~~~ 605 (628)
+.++.-...
T Consensus 242 ~~~~~~~~~ 250 (272)
T 3rfs_A 242 AGSVAPDSA 250 (272)
T ss_dssp TSCBCGGGS
T ss_pred ccccCCCCC
Confidence 998764433
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.4e-22 Score=210.61 Aligned_cols=236 Identities=20% Similarity=0.187 Sum_probs=165.0
Q ss_pred CCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES 389 (628)
Q Consensus 310 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 389 (628)
+++|++|++++|.+.+..|..+.. +++|+.|++++|.+++..| +..+++|+.|++++|.+. .++. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTT-CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhC-CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence 345666666666665433334433 6666666666666654333 666677777777777665 3332 367777
Q ss_pred EEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCcccc-CCCCcceEECCCCc
Q 039739 390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLG-NLTRLQHIMMPKNH 468 (628)
Q Consensus 390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 468 (628)
|++++|.+.+.... .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 77777777654332 356777777777777766666777777788888888777766666654 67788888888887
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccC-Cccch
Q 039739 469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN-GNISD 547 (628)
Q Consensus 469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 547 (628)
+.+.. .+..+++|+.|++++|.+++..+....+++|+.|++++|.++ .+|.. +..+++|+.|++++|.+. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hccCCCCCEEEcCCCCCcCcchHH
Confidence 76442 244578888888888888766555445778888888888886 45655 788899999999999987 56778
Q ss_pred hhcCCCCCcEEECC
Q 039739 548 WVDGLSQLSHLILG 561 (628)
Q Consensus 548 ~~~~l~~L~~L~l~ 561 (628)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 88989999888886
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=6.8e-23 Score=200.94 Aligned_cols=246 Identities=22% Similarity=0.215 Sum_probs=174.4
Q ss_pred CccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCC-cccchhhh------hhCCCccEEEcccccCCCcccccc--
Q 039739 286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFR-GHIPVEIG------DVLPSLFSLNISMNALDGSIPSSF-- 356 (628)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~------~~~~~L~~L~L~~~~~~~~~~~~~-- 356 (628)
.++|+.+++.++.+ ..+..+... ++.|+++++.+. ..++.... ..+++|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555554 222222222 666666666652 23444443 137899999999999998888765
Q ss_pred cCCCCccEEECcCCcccCccchhhhcCC-----ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCc--ccccc
Q 039739 357 GNMKFLQILDLSNNHLTGEIPEHLVVGC-----VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE--IPQSL 429 (628)
Q Consensus 357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~ 429 (628)
..+++|+.|++++|.+.+. +.. +..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8899999999999999844 533 3334 8999999999999888778889999999999999987654 23333
Q ss_pred --cCCCcccEEEccCCcCCCc---cCccccCCCCcceEECCCCcCCCCCc-ccccCCCCCCEEEccCCcCcCCCCCCCCC
Q 039739 430 --SKCFVLEGLFLNNNSLSGK---IPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFHP 503 (628)
Q Consensus 430 --~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 503 (628)
..+++|++|++++|.+.+. ....+.++++|++|++++|.+.+..| ..+..+++|++|++++|+++ .+|..+
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~-- 272 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-- 272 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC--
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc--
Confidence 7899999999999998732 22445688999999999999987664 44667889999999998877 333222
Q ss_pred CcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 504 LSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 504 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
. ++|+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus 273 ----------------------~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 ----------------------P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ----------------------C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred ----------------------c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 1 4666666666666644 33 666666666666666665
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=5.7e-21 Score=184.53 Aligned_cols=202 Identities=23% Similarity=0.175 Sum_probs=116.7
Q ss_pred ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739 356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435 (628)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 435 (628)
+..+++++.++++++.++ .+|..+ .+.++.|++++|.++...+..+..+++|+.|++++|.+++..+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 344556666666666665 555433 3566666666666665555556666667777777666653222 2556667
Q ss_pred cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCC
Q 039739 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKN 514 (628)
Q Consensus 436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n 514 (628)
++|++++|.+. .++..+.++++|++|++++|.++...+..|..+++|+.|++++|++....+..+. +++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 77777766665 4555566667777777777776655556666677777777777766643333332 344444444444
Q ss_pred cCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 515 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
++. .++...+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 443 333333455555555555555555 34444445555555555555554
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=3.5e-21 Score=185.43 Aligned_cols=221 Identities=24% Similarity=0.287 Sum_probs=162.0
Q ss_pred EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCC
Q 039739 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395 (628)
Q Consensus 316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 395 (628)
++..+..+. .+|..+ .++++.|++++|.+++..+..+..+++|+.|++++|.+. .++...+..+++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 333344444 555543 347888888888888666667888888999999988887 666555667889999999999
Q ss_pred ccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCCCCc
Q 039739 396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIP 474 (628)
Q Consensus 396 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~ 474 (628)
.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+.++++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 88877767788889999999999988866666788899999999999988753 57889999999999999999987766
Q ss_pred ccccCCCCCC----EEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhc
Q 039739 475 VEFCQLDWLQ----ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD 550 (628)
Q Consensus 475 ~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 550 (628)
..+..+++|+ .|++++|++.+..+..+... +|+.|++++|.+++.++..+.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-------------------------~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-------------------------RLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-------------------------CEEEEECCSSCCSCCCTTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCC-------------------------cccEEECCCCceeecCHhHhc
Confidence 6676666666 78888887764433333322 566666666666554444555
Q ss_pred CCCCCcEEECCCCcCC
Q 039739 551 GLSQLSHLILGHNNLE 566 (628)
Q Consensus 551 ~l~~L~~L~l~~~~i~ 566 (628)
.+++|+.|++++|+++
T Consensus 222 ~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCCSCCEEECCSSCBC
T ss_pred ccccccEEEccCCccc
Confidence 6666666666666665
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-20 Score=181.04 Aligned_cols=202 Identities=26% Similarity=0.265 Sum_probs=116.6
Q ss_pred CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEc
Q 039739 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416 (628)
Q Consensus 337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 416 (628)
..+.++++++.++ .+|..+. ++++.|++++|.+. .++...+.++++|++|++++|.++......+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3444555554444 2333221 34555555555554 344333444555555555555555444444455666666666
Q ss_pred cCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739 417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 496 (628)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 496 (628)
++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|++...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 66666544445556666667777766666655556667777777777777777755555577777777777777766532
Q ss_pred CCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 497 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
. ...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 173 ~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 P------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp C------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C------------------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 2 222444555666666666655544445555666666666666654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=7.3e-21 Score=182.46 Aligned_cols=158 Identities=23% Similarity=0.198 Sum_probs=113.1
Q ss_pred CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414 (628)
Q Consensus 335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 414 (628)
+++++.|++.+|.+.. + ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++.....+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 5677777777776652 2 23666777777777777765 333 24457777777777777776666666777788888
Q ss_pred EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 88888777666666777788888888888777666666777888888888888887666666777888888888887776
Q ss_pred CCC
Q 039739 495 GSL 497 (628)
Q Consensus 495 ~~~ 497 (628)
+..
T Consensus 195 ~~~ 197 (272)
T 3rfs_A 195 SVP 197 (272)
T ss_dssp CCC
T ss_pred ccC
Confidence 433
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.4e-22 Score=199.57 Aligned_cols=253 Identities=20% Similarity=0.181 Sum_probs=152.7
Q ss_pred EEEccCCcCCcccchhhhhhCCCccEEEcccccCCCccc----ccccCCC-CccEEECcCCcccCccchhhhc---C-Cc
Q 039739 315 MLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIP----SSFGNMK-FLQILDLSNNHLTGEIPEHLVV---G-CV 385 (628)
Q Consensus 315 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~---~-~~ 385 (628)
.++++.+.+.+.+|... ...++|+.|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+.. . ++
T Consensus 2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677787776555443 335568888888888876555 6677777 8888888888887443433222 1 27
Q ss_pred cccEEEccCCccCCccccccc----CC-CCCcEEEccCccCcCcccccc----cC-CCcccEEEccCCcCCCccC----c
Q 039739 386 NLESLALSNNSLEGHMFSRNF----NL-TNLRWLQLEGNHFVGEIPQSL----SK-CFVLEGLFLNNNSLSGKIP----R 451 (628)
Q Consensus 386 ~L~~L~l~~~~l~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~ 451 (628)
+|++|++++|.+++.....+. .+ ++|++|++++|.+.+..+..+ .. +++|++|++++|.+.+... .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 888888888888765544333 33 788888888888775544333 33 3588888888887764332 3
Q ss_pred cccCCC-CcceEECCCCcCCCCCccc----ccCC-CCCCEEEccCCcCcCCCCCCC----C--CCcccEEecCCCcCcCC
Q 039739 452 WLGNLT-RLQHIMMPKNHLEGPIPVE----FCQL-DWLQILDISDNNISGSLPSCF----H--PLSVEQVHLSKNMLHGQ 519 (628)
Q Consensus 452 ~~~~~~-~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~----~--~~~L~~L~l~~n~~~~~ 519 (628)
.+...+ +|++|++++|.+++..+.. +..+ ++|+.|++++|.+.+.....+ . +++|+.|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334454 7888888888877655543 3344 478888888887765322211 1 23566666666655432
Q ss_pred CC---ccccccCCCccEEECCCcccCCc-------cchhhcCCCCCcEEECCCCcCCcc
Q 039739 520 LK---RGTFFNSYSLVTLDLSYNRLNGN-------ISDWVDGLSQLSHLILGHNNLEGE 568 (628)
Q Consensus 520 ~~---~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~i~~~ 568 (628)
.. ...+..+++|+.|++++|.+... ++..+..+++|+.|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 11 11134445566666655553222 122334455555555555555533
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=6.9e-20 Score=176.93 Aligned_cols=203 Identities=21% Similarity=0.170 Sum_probs=116.2
Q ss_pred cccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcc
Q 039739 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN 386 (628)
Q Consensus 307 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 386 (628)
+..++++++++++++.++ .+|..+ .+.++.|++++|.+.+..+..+..+++|+.|++++|.+. .++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-------
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-------
Confidence 345556666666666555 454433 245566666666655444455555555555555555554 22221
Q ss_pred ccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739 387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466 (628)
Q Consensus 387 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 466 (628)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 74 -------------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 74 -------------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp -------------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred -------------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 33445555555555544 3444445555555555555555544445555566666666666
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739 467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543 (628)
Q Consensus 467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 543 (628)
|.+....+..|..+++|+.|++++|+++...+..+. +++|+.|++++|++. .+|.. +...++|+.|++++|.+..
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCccC
Confidence 666555444555666666666666666544444433 556666666666664 56665 5556799999999998763
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.7e-21 Score=193.67 Aligned_cols=264 Identities=19% Similarity=0.205 Sum_probs=183.5
Q ss_pred ccCEEEccCCcCCcccchhhhhhC--CCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739 312 RLGMLDISNNNFRGHIPVEIGDVL--PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES 389 (628)
Q Consensus 312 ~L~~L~l~~~~i~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 389 (628)
.++.++++++.+. +..+.. + +.++.+++.+|.+.+..+. +..+++|+.|++++|.+.+......+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3677888877665 233332 3 7889999998888865554 5568889999999888764323334556888888
Q ss_pred EEccCCccCCcccccccCCCCCcEEEccCc-cCcCc-ccccccCCCcccEEEccCC-cCCCc-cCccccCCC-CcceEEC
Q 039739 390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGN-HFVGE-IPQSLSKCFVLEGLFLNNN-SLSGK-IPRWLGNLT-RLQHIMM 464 (628)
Q Consensus 390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l 464 (628)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 888888877666667777888888888888 55542 5556777888888888888 77643 455677777 8888888
Q ss_pred CCCc--CC-CCCcccccCCCCCCEEEccCCc-CcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcc
Q 039739 465 PKNH--LE-GPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR 540 (628)
Q Consensus 465 ~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 540 (628)
++|. ++ ...+..+..+++|+.|++++|. +++ ..+.. +..+++|+.|++++|.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----------------------~~~~~-l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----------------------DCFQE-FFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----------------------GGGGG-GGGCTTCCEEECTTCT
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-----------------------HHHHH-HhCCCCCCEeeCCCCC
Confidence 8873 43 2334456677777777777776 332 22222 6677899999999985
Q ss_pred -cCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccccccccc
Q 039739 541 -LNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYN 607 (628)
Q Consensus 541 -~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~~~~ 607 (628)
+.......+..+++|+.|++++| ++......+. .+++.|++++|++++..|+.+.+-.....|.
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~~~~~~i~g 323 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWG 323 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSSTTCCCBTT
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccccccceeec
Confidence 43333346788999999999999 6533333332 2356666899999999998888743333444
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=2.2e-21 Score=194.44 Aligned_cols=251 Identities=20% Similarity=0.184 Sum_probs=109.6
Q ss_pred EeecCCCCCCCCcccccCCccCEEEccCCcCCcccc----hhhhhhCC-CccEEEcccccCCCcccccccCC-----CCc
Q 039739 293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIP----VEIGDVLP-SLFSLNISMNALDGSIPSSFGNM-----KFL 362 (628)
Q Consensus 293 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~-----~~L 362 (628)
.++.+.+.+..+..+...++|++|++++|.+.+..+ ..+. .++ +|++|++++|.+++..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344444444333333334445555555555543322 1222 234 55555555555554433333332 555
Q ss_pred cEEECcCCcccCccchhh---hcCC-ccccEEEccCCccCCccccccc----C-CCCCcEEEccCccCcCcc----cccc
Q 039739 363 QILDLSNNHLTGEIPEHL---VVGC-VNLESLALSNNSLEGHMFSRNF----N-LTNLRWLQLEGNHFVGEI----PQSL 429 (628)
Q Consensus 363 ~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~l~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~----~~~~ 429 (628)
++|++++|.+.+..+..+ +..+ ++|++|++++|.+++.....+. . .++|++|++++|.+.+.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 555555555543222211 1122 4555555555555443332221 2 235555555555554321 2222
Q ss_pred cCCC-cccEEEccCCcCCCccCc----cccCC-CCcceEECCCCcCCCCC----cccccC-CCCCCEEEccCCcCcCCCC
Q 039739 430 SKCF-VLEGLFLNNNSLSGKIPR----WLGNL-TRLQHIMMPKNHLEGPI----PVEFCQ-LDWLQILDISDNNISGSLP 498 (628)
Q Consensus 430 ~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~l~~-l~~L~~L~l~~~~~~~~~~ 498 (628)
...+ +|++|++++|.+.+..+. .+..+ ++|++|++++|.+.+.. +..+.. .++|++|++++|++.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 555555555555433332 22233 35555555555554322 222222 2355555555555544322
Q ss_pred CC-----CCCCcccEEecCCCcCcCCCCc------cccccCCCccEEECCCcccCCc
Q 039739 499 SC-----FHPLSVEQVHLSKNMLHGQLKR------GTFFNSYSLVTLDLSYNRLNGN 544 (628)
Q Consensus 499 ~~-----~~~~~L~~L~l~~n~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~ 544 (628)
.. ...++|+.|++++|.+.+..+. ..+..+++|+.|++++|.+...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 11 1144555555555552211000 1134445555555555555433
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=7e-20 Score=172.15 Aligned_cols=196 Identities=19% Similarity=0.168 Sum_probs=111.1
Q ss_pred cccEEEccCCccCCcccccccCCCCCcEEEccCcc-CcCcccccccCCCcccEEEccC-CcCCCccCccccCCCCcceEE
Q 039739 386 NLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNN-NSLSGKIPRWLGNLTRLQHIM 463 (628)
Q Consensus 386 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 463 (628)
++++|++++|.++......+..+++|++|++++|. +....+..+..+++|++|++++ |.+....+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555554444333344445555555555554 4433333455555555555555 455434444555555555555
Q ss_pred CCCCcCCCCCcccccCCCCCC---EEEccCC-cCcCCCCCCCC-CCccc-EEecCCCcCcCCCCccccccCCCccEEECC
Q 039739 464 MPKNHLEGPIPVEFCQLDWLQ---ILDISDN-NISGSLPSCFH-PLSVE-QVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537 (628)
Q Consensus 464 l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~-~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 537 (628)
+++|.+.+ .|. +..+++|+ .|++++| .+....+..+. +++|+ .|++++|++. .++..++.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 55555553 232 55555555 6666666 55544333332 45555 5556555554 555554554 678888888
Q ss_pred Ccc-cCCccchhhcCC-CCCcEEECCCCcCCccCCccccCCCCCcEEECCCCc
Q 039739 538 YNR-LNGNISDWVDGL-SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS 588 (628)
Q Consensus 538 ~~~-~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~ 588 (628)
+|+ ++...+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|++.++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 884 775556677777 78888888888887 45544 56777888877663
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.9e-19 Score=174.38 Aligned_cols=194 Identities=20% Similarity=0.229 Sum_probs=126.9
Q ss_pred ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739 356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435 (628)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 435 (628)
...+++|+.|+++++.+. .++. +..+++|++|++++|.+.+... +..+++|+.|++++|.+.+. + .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCC
Confidence 345677888888888776 4553 4457888888888887766443 67778888888888877642 3 56777788
Q ss_pred cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCc
Q 039739 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNM 515 (628)
Q Consensus 436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 515 (628)
++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ ...+++|+.|++++|.
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 8888888877643 2 37777788888888887775433 6677777777777777764322 3335566666666666
Q ss_pred CcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 516 LHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 516 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
+.+ ++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 185 l~~-~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISD-ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCC-CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCc-Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 542 222 4555666666666666554332 555666666666666655
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.1e-21 Score=198.94 Aligned_cols=247 Identities=20% Similarity=0.214 Sum_probs=151.8
Q ss_pred cchhhhhhCCCccEEEcccccCCCcc----cccccCCCCccEEECcCCccc---Cccchhh------hcCCccccEEEcc
Q 039739 327 IPVEIGDVLPSLFSLNISMNALDGSI----PSSFGNMKFLQILDLSNNHLT---GEIPEHL------VVGCVNLESLALS 393 (628)
Q Consensus 327 ~~~~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~ 393 (628)
++..+.. +++|+.|++++|.+.... +..+..+++|+.|++++|.+. +.+|..+ +..+++|++|+++
T Consensus 24 l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4444443 678888888888877543 334667888888888876443 2233222 2346777777777
Q ss_pred CCccCCc----ccccccCCCCCcEEEccCccCcCccccc----ccCC---------CcccEEEccCCcCCC-ccC---cc
Q 039739 394 NNSLEGH----MFSRNFNLTNLRWLQLEGNHFVGEIPQS----LSKC---------FVLEGLFLNNNSLSG-KIP---RW 452 (628)
Q Consensus 394 ~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~-~~~---~~ 452 (628)
+|.+... .+..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+.. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 7776652 3334456667777777777664332222 2222 566666666666542 222 24
Q ss_pred ccCCCCcceEECCCCcCCC-----CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739 453 LGNLTRLQHIMMPKNHLEG-----PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN 527 (628)
Q Consensus 453 ~~~~~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 527 (628)
+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++... ...++.. +..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~~-l~~ 242 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAIA-LKS 242 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHHH-GGG
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHHH-Hcc
Confidence 4455566666666665542 11224455555555555555543110 0234443 677
Q ss_pred CCCccEEECCCcccCCc----cchhhc--CCCCCcEEECCCCcCCc----cCCccc-cCCCCCcEEECCCCccccccc
Q 039739 528 SYSLVTLDLSYNRLNGN----ISDWVD--GLSQLSHLILGHNNLEG----EVPVQL-CKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 528 ~~~L~~L~l~~~~~~~~----~~~~~~--~l~~L~~L~l~~~~i~~----~~~~~l-~~l~~L~~L~l~~~~~~~~ip 594 (628)
+++|+.|++++|.+++. ++..+. .+++|+.|++++|+++. .+|..+ .++++|++|++++|++.+..|
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88899999999988755 455563 38899999999999986 377777 668999999999999886554
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=6.9e-19 Score=166.56 Aligned_cols=180 Identities=22% Similarity=0.184 Sum_probs=106.8
Q ss_pred ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEEC
Q 039739 385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM 464 (628)
Q Consensus 385 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 464 (628)
...++++++++.++... ..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34566666666665422 222 246666777766666555556666666666666666666555555666666666666
Q ss_pred CCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCc
Q 039739 465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN 544 (628)
Q Consensus 465 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 544 (628)
++|.+....+..|..+++|++|++++|+++... ...+..+++|+.|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP------------------------SGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcC------------------------hhHhccCCcccEEECcCCcCCcc
Confidence 666666555555666666666666666655333 33345555666666666666554
Q ss_pred cchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739 545 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 545 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 591 (628)
.+..|+.+++|+.|++++|++++..+..|..+++|++|++++|++..
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 44455666666666666666664444455566666666666666653
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=182.81 Aligned_cols=226 Identities=20% Similarity=0.205 Sum_probs=121.1
Q ss_pred CccEEEcccccCCCcccc---cccCCCCccEEECcCCcccCccchhhh-cCCccccEEEccCCccCCccc----ccccCC
Q 039739 337 SLFSLNISMNALDGSIPS---SFGNMKFLQILDLSNNHLTGEIPEHLV-VGCVNLESLALSNNSLEGHMF----SRNFNL 408 (628)
Q Consensus 337 ~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~~ 408 (628)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..+...+ ..+++|++|++++|.+.+... ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455666665554421000 111234466666666665544444332 445566666666665554222 222345
Q ss_pred CCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc--c--CccccCCCCcceEECCCCcCCCCCcc---cccCCC
Q 039739 409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK--I--PRWLGNLTRLQHIMMPKNHLEGPIPV---EFCQLD 481 (628)
Q Consensus 409 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~l~ 481 (628)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++..... .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 5666666666655544445555555666666666554321 1 12224455555555555555421111 134445
Q ss_pred CCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc---CCCccEEECCCcccCCccchhhcCCCCCcEE
Q 039739 482 WLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN---SYSLVTLDLSYNRLNGNISDWVDGLSQLSHL 558 (628)
Q Consensus 482 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 558 (628)
+|++|++++|++.+ ..|.. +.. +++|+.|++++|+++ .+|..+. ++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~-----------------------~~p~~-~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 225 QPHSLDLSHNSLRA-----------------------TVNPS-APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp CCSSEECTTSCCCC-----------------------CCCSC-CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred CCCEEECCCCCCCc-----------------------cchhh-HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 55555555555543 33322 222 367777788877777 4555543 678888
Q ss_pred ECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739 559 ILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 559 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 591 (628)
++++|++++ +|. +..+++|+.|++++|++++
T Consensus 278 ~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 888888873 343 6677888888888887764
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.9e-19 Score=169.13 Aligned_cols=197 Identities=20% Similarity=0.222 Sum_probs=112.8
Q ss_pred CccEEEcccccCCCcccccccCCCCccEEECcCCc-ccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEE
Q 039739 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415 (628)
Q Consensus 337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 415 (628)
+++.|++++|.+++..+..+..+++|+.|++++|+ +. .++.. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~------------------------~f~~l~~L~~L~ 86 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESH------------------------SFYNLSKVTHIE 86 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTT------------------------TEESCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHh------------------------HcCCCcCCcEEE
Confidence 55555555555554333345555555555555554 33 34433 344444445555
Q ss_pred ccC-ccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcc---eEECCCC-cCCCCCcccccCCCCCC-EEEcc
Q 039739 416 LEG-NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ---HIMMPKN-HLEGPIPVEFCQLDWLQ-ILDIS 489 (628)
Q Consensus 416 l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~ 489 (628)
+++ |.+.+..+..+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+....+..|..+++|+ .|+++
T Consensus 87 l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 544 44443333444455555555555555442 232 44455554 6666666 55544444566666666 66666
Q ss_pred CCcCcCCCCCCCCCCcccEEecCCCc-CcCCCCccccccC-CCccEEECCCcccCCccchhhcCCCCCcEEECCCCc
Q 039739 490 DNNISGSLPSCFHPLSVEQVHLSKNM-LHGQLKRGTFFNS-YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNN 564 (628)
Q Consensus 490 ~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 564 (628)
+|++....+..+..++|+.|++++|+ +. .++..++..+ ++|+.|++++|++++.++. .+++|+.|+++++.
T Consensus 165 ~n~l~~i~~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp SCCCCEECTTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCHhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 66666444444445667777777774 54 5555557888 8999999999998854433 67788999888763
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1.1e-18 Score=165.16 Aligned_cols=180 Identities=24% Similarity=0.251 Sum_probs=129.1
Q ss_pred CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL 440 (628)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 440 (628)
+.+.++++++.+. .+|..+ .+.++.|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4556777776665 555443 356777777777777666666777788888888888877666677778888888888
Q ss_pred cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739 441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520 (628)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 520 (628)
++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|++++|++.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------------- 147 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP----------------------- 147 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-----------------------
Confidence 888887666677788888888888888888666666788888888888888776322
Q ss_pred CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCcc
Q 039739 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGE 568 (628)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 568 (628)
...+..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 148 -~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 -AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 22255566666677776666655555666667777777777766643
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1e-18 Score=170.56 Aligned_cols=192 Identities=23% Similarity=0.310 Sum_probs=147.2
Q ss_pred CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414 (628)
Q Consensus 335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 414 (628)
+++|+.|++.+|.+.. ++ .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 5688888888888774 34 5777888888888888887 4554 55688888888888887763 357778888888
Q ss_pred EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 8888888753 3 37788888888888888874433 7788888888888888875443 788888888888888887
Q ss_pred CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543 (628)
Q Consensus 495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 543 (628)
+..+ ...+++|+.|++++|++.+.. + +..+++|+.|++++|.+++
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVS-P--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCG-G--GTTCTTCCEEEEEEEEEEC
T ss_pred cChh-hcCCCCCCEEEccCCccCccc-c--ccCCCCCCEEEccCCeeec
Confidence 5433 444788888888888886433 2 6778888888888888874
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=5.9e-20 Score=182.60 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=164.7
Q ss_pred CCccEEEccCCcccCcCchhHHhcC--ccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcc-cchhhhhhCCCc
Q 039739 262 HDLEYVDLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGH-IPVEIGDVLPSL 338 (628)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~~L 338 (628)
..++.++++++.+. +.. +..+ ++++.+++.++.+.+..+. +..+++|++|++++|.+.+. ++..+ ..+++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCC
T ss_pred hhheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCC
Confidence 34788888887665 222 3455 7899999998887765544 55789999999999987654 44444 448899
Q ss_pred cEEEcccccCCCcccccccCCCCccEEECcCC-cccCccchhhhcCCccccEEEccCC-ccCCc-ccccccCCC-CCcEE
Q 039739 339 FSLNISMNALDGSIPSSFGNMKFLQILDLSNN-HLTGEIPEHLVVGCVNLESLALSNN-SLEGH-MFSRNFNLT-NLRWL 414 (628)
Q Consensus 339 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~-~L~~L 414 (628)
++|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++. ....+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 99999999888777778888999999999998 5653223334556889999999998 77654 344566788 89999
Q ss_pred EccCc--cCc-CcccccccCCCcccEEEccCCc-CCCccCccccCCCCcceEECCCCc-CCCCCcccccCCCCCCEEEcc
Q 039739 415 QLEGN--HFV-GEIPQSLSKCFVLEGLFLNNNS-LSGKIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDIS 489 (628)
Q Consensus 415 ~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~ 489 (628)
++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 99888 444 3456666778888888888888 665666677888888888888885 222222246778888888888
Q ss_pred CC
Q 039739 490 DN 491 (628)
Q Consensus 490 ~~ 491 (628)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 77
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=9.8e-19 Score=174.19 Aligned_cols=243 Identities=19% Similarity=0.149 Sum_probs=140.2
Q ss_pred CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE-EEc
Q 039739 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES-LAL 392 (628)
Q Consensus 314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l 392 (628)
++++.+++.++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|++.+.++...+.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666665 566544 3466677777766664333456666666666666666654555555555555544 333
Q ss_pred cCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC
Q 039739 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472 (628)
Q Consensus 393 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 472 (628)
++|++....+..+..+++|+.|++++|.+....+..+.....+..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 445554444444555555555555555554333333333333444444332 223322
Q ss_pred CcccccCC-CCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739 473 IPVEFCQL-DWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG 551 (628)
Q Consensus 473 ~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 551 (628)
.+..|..+ ..++.|++++|+++...+..+...+++.+.+.++...+.++.++|..+++|+.|++++|+++..++..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 23334443 24666677777666555555666677777776544445777776788888888888888887544333
Q ss_pred CCCCcEEECCCCcCCccCCccccCCCCCcEEECCCC
Q 039739 552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 587 (628)
Q Consensus 552 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 587 (628)
+.+|+.|.+.+++-...+|. +.++++|+.+++.++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 45666666666654446663 777888888888653
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=6.4e-21 Score=193.19 Aligned_cols=246 Identities=17% Similarity=0.191 Sum_probs=184.2
Q ss_pred CCcccccCCccCEEEccCCcCCcccchhhh---hhCCCccEEEcccccC---CCcccccc-------cCCCCccEEECcC
Q 039739 303 FQLPIHSHKRLGMLDISNNNFRGHIPVEIG---DVLPSLFSLNISMNAL---DGSIPSSF-------GNMKFLQILDLSN 369 (628)
Q Consensus 303 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---~~~~~L~~L~L~~~~~---~~~~~~~~-------~~~~~L~~L~l~~ 369 (628)
....+..++.|++|++++|.+.+..+..+. ..+++|+.|++++|.+ .+.+|..+ ..+++|+.|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344567889999999999998865444433 2378999999999754 33445444 7899999999999
Q ss_pred CcccCc----cchhhhcCCccccEEEccCCccCCccccccc----CC---------CCCcEEEccCccCcC-ccc---cc
Q 039739 370 NHLTGE----IPEHLVVGCVNLESLALSNNSLEGHMFSRNF----NL---------TNLRWLQLEGNHFVG-EIP---QS 428 (628)
Q Consensus 370 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~----~~---------~~L~~L~l~~~~~~~-~~~---~~ 428 (628)
|.+... ++. .+..+++|++|++++|.++......+. .+ ++|++|++++|.+.. ..+ ..
T Consensus 104 n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998853 332 345689999999999998654433333 33 899999999999873 344 46
Q ss_pred ccCCCcccEEEccCCcCCCc-----cCccccCCCCcceEECCCCcCC----CCCcccccCCCCCCEEEccCCcCcCCCCC
Q 039739 429 LSKCFVLEGLFLNNNSLSGK-----IPRWLGNLTRLQHIMMPKNHLE----GPIPVEFCQLDWLQILDISDNNISGSLPS 499 (628)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 499 (628)
+..+++|++|++++|.+... .+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+....
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 77899999999999988632 3337888999999999999985 45667788999999999999987642110
Q ss_pred CCCCCcccEEecCCCcCcCCCCcccc--ccCCCccEEECCCcccCC----ccchhh-cCCCCCcEEECCCCcCCccC
Q 039739 500 CFHPLSVEQVHLSKNMLHGQLKRGTF--FNSYSLVTLDLSYNRLNG----NISDWV-DGLSQLSHLILGHNNLEGEV 569 (628)
Q Consensus 500 ~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~i~~~~ 569 (628)
.++.. + +.+++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 263 -------------------~l~~~-l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 -------------------AVVDA-FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp -------------------HHHHH-HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred -------------------HHHHH-HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 11221 3 337888888998888886 366666 66789999999999888655
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=172.97 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=157.3
Q ss_pred CCccEEEccCCcccCcCchhH--HhcCccCcEEEeecCCCCCCCCccc--ccCCccCEEEccCCcCCcccc----hhhhh
Q 039739 262 HDLEYVDLSHIKMNGEFPTWL--LENNTKLRQLSLVNDSLGGPFQLPI--HSHKRLGMLDISNNNFRGHIP----VEIGD 333 (628)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~----~~~~~ 333 (628)
..++.+.+.++.+.......+ ...+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 356777887776643222211 1234679999999999888777776 888999999999998875444 2222
Q ss_pred hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCc--cc-hhhhcCCccccEEEccCCccCCcccc---cccC
Q 039739 334 VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IP-EHLVVGCVNLESLALSNNSLEGHMFS---RNFN 407 (628)
Q Consensus 334 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~ 407 (628)
.+++|+.|++++|.+.+..+..+..+++|++|++++|++.+. ++ ......+++|++|++++|.++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478899999999998877777888889999999999876522 11 12224577888888888877532211 2346
Q ss_pred CCCCcEEEccCccCcCcccccccCC---CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCC
Q 039739 408 LTNLRWLQLEGNHFVGEIPQSLSKC---FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 484 (628)
Q Consensus 408 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 484 (628)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|++|++++|.+.+. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 6788888888888776666656555 57777777777776 4455443 6777777777777643 22 56667777
Q ss_pred EEEccCCcCcC
Q 039739 485 ILDISDNNISG 495 (628)
Q Consensus 485 ~L~l~~~~~~~ 495 (628)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 77777777653
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=7.8e-18 Score=154.40 Aligned_cols=163 Identities=23% Similarity=0.155 Sum_probs=77.7
Q ss_pred ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEEC
Q 039739 385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM 464 (628)
Q Consensus 385 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 464 (628)
++|++|++++|.++......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34444555444444333333444455555555555444333333444455555555555444333333444555555555
Q ss_pred CCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCc
Q 039739 465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN 544 (628)
Q Consensus 465 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 544 (628)
++|.+.+..+..+..+++|+.|++++|++++ ++...+..+++|+.|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------------------------VPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------------------------CCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccce------------------------eCHHHhccCCCccEEEecCCCee--
Confidence 5555544433334445555555555554442 22222444555555555555443
Q ss_pred cchhhcCCCCCcEEECCCCcCCccCCccccCCCC
Q 039739 545 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 578 (628)
Q Consensus 545 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~ 578 (628)
+.+++|+.|+++.|++++.+|+.++.++.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 23345555555555555555555554443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=7.8e-18 Score=154.41 Aligned_cols=162 Identities=22% Similarity=0.215 Sum_probs=107.0
Q ss_pred cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC-CCCcccEEecC
Q 039739 434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSVEQVHLS 512 (628)
Q Consensus 434 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~ 512 (628)
++++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|++++|++....+..+ .+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333344445555555555555543333334455555555555555553333332 24555555555
Q ss_pred CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccc
Q 039739 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS 592 (628)
Q Consensus 513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 592 (628)
+|++. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+ .+++|+.|++++|+++|.
T Consensus 109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 55554 3444447889999999999999997777778999999999999998873 457899999999999999
Q ss_pred ccccccccccc
Q 039739 593 IPLCLDNTTLH 603 (628)
Q Consensus 593 ip~~~~~~~~~ 603 (628)
+|+.+..++-.
T Consensus 181 ip~~~~~l~~~ 191 (208)
T 2o6s_A 181 VRNSAGSVAPD 191 (208)
T ss_dssp BBCTTSSBCTT
T ss_pred eeccCccccCC
Confidence 99999987653
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1e-17 Score=166.81 Aligned_cols=224 Identities=22% Similarity=0.214 Sum_probs=169.3
Q ss_pred cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccE-EEc
Q 039739 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEG-LFL 440 (628)
Q Consensus 363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~l 440 (628)
++++.++++++ ++|..+ .+++++|++++|+++......|.++++|++|++++|.+.+.++ .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666544 4577888888888876666677788888888888888765444 46777877765 555
Q ss_pred cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCC-cCcCCCCCCCC--CCcccEEecCCCcCc
Q 039739 441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN-NISGSLPSCFH--PLSVEQVHLSKNMLH 517 (628)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~--~~~L~~L~l~~n~~~ 517 (628)
..|.+....+..|.++++|++|++++|.+....+..+....++..+++.++ .+....+..+. ...++.|++++|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 667777667788899999999999999998777767778888999999775 55544444444 456889999999995
Q ss_pred CCCCccccccCCCccEEECCC-cccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccc
Q 039739 518 GQLKRGTFFNSYSLVTLDLSY-NRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595 (628)
Q Consensus 518 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~ 595 (628)
.++..++ ...+|+.|++++ |.++...++.|..+++|+.|++++|+++ .+|.. .+.+|+.|.+.++...+.+|+
T Consensus 168 -~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 -EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp -EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred -CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC
Confidence 6777644 457899999985 5677555567899999999999999999 66653 356778888888877778885
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.5e-17 Score=173.93 Aligned_cols=189 Identities=24% Similarity=0.322 Sum_probs=107.3
Q ss_pred CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL 440 (628)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 440 (628)
+++.|+++++.+. .+|..+ +++|++|++++|.++.. + ..+++|+.|++++|.+++ +|.
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~------------- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE------------- 117 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-------------
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-------------
Confidence 5555666655554 344332 24555555555555421 1 234455555555554443 333
Q ss_pred cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739 441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520 (628)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 520 (628)
+.+ +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +
T Consensus 118 ------------l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 118 ------------LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp ------------CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-C
T ss_pred ------------hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-c
Confidence 222 45555555555443 222 34555555555555543 222 34555555555555543 4
Q ss_pred CccccccCCCccEEECCCcccCCccchhhcCCCCC-------cEEECCCCcCCccCCccccCCCCCcEEECCCCcccccc
Q 039739 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL-------SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSI 593 (628)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~i 593 (628)
|. +. ++|+.|++++|+++ .+|. +.. +| +.|++++|+++ .+|..+.++++|+.|++++|++++.+
T Consensus 176 p~--l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 176 PE--LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CC--CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred ch--hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 44 32 67777777777777 3444 443 56 88888888888 67877777888888888888888888
Q ss_pred ccccccccc
Q 039739 594 PLCLDNTTL 602 (628)
Q Consensus 594 p~~~~~~~~ 602 (628)
|..+.+++.
T Consensus 247 p~~l~~l~~ 255 (571)
T 3cvr_A 247 RESLSQQTA 255 (571)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 888877654
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.9e-17 Score=157.07 Aligned_cols=186 Identities=20% Similarity=0.238 Sum_probs=109.5
Q ss_pred EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCC
Q 039739 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 443 (628)
Q Consensus 364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 443 (628)
.+.+....+.+.... ..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 28 ~~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSEECH---HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHhcCCCcccccch---hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 334555554422222 2367788888888777653 345667788888888887775433 677777888888777
Q ss_pred cCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcc
Q 039739 444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRG 523 (628)
Q Consensus 444 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 523 (628)
.+.+ . ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+. +....+++|+.|++++|.+.+.. +
T Consensus 101 ~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~-~- 173 (291)
T 1h6t_A 101 KVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-P- 173 (291)
T ss_dssp CCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-G-
T ss_pred cCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch-h-
Confidence 7763 2 2367777777777777777643 3466777777777777776632 22223455555555555553222 1
Q ss_pred ccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 524 TFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 524 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|+++
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 44455555555555555432 2 2445555555555555554
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.4e-16 Score=146.96 Aligned_cols=133 Identities=24% Similarity=0.281 Sum_probs=67.9
Q ss_pred CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739 433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512 (628)
Q Consensus 433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 512 (628)
+++++|++++|.+....+..|.++++|+.|++++|.+....|..|..+++|++|++++|+++.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----------------- 94 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE----------------- 94 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-----------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-----------------
Confidence 355555555555554444455555566666666665555555555566666666666655542
Q ss_pred CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589 (628)
Q Consensus 513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 589 (628)
++...+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..++.|..+++|++|++++|++
T Consensus 95 -------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 95 -------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred -------cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 2222234444445555555544444444444445555555555555433333444455555555555544
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2.6e-16 Score=145.15 Aligned_cols=132 Identities=24% Similarity=0.233 Sum_probs=66.8
Q ss_pred ccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCC
Q 039739 435 LEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSK 513 (628)
Q Consensus 435 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 513 (628)
+++|++++|.+.+..+ ..|.++++|++|++++|.+.+..+..|..+++|++|++++|+++.
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~------------------ 95 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN------------------ 95 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC------------------
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc------------------
Confidence 3455555554443322 234445555555555555554444445555555555555554442
Q ss_pred CcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739 514 NMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 514 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
++...+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|+.|..+++|++|++++|++.
T Consensus 96 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 96 ------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 22222444555555555555555544555555555555555555555444555555555555555555554
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=3e-16 Score=164.11 Aligned_cols=194 Identities=23% Similarity=0.321 Sum_probs=133.3
Q ss_pred CCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEE
Q 039739 336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415 (628)
Q Consensus 336 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 415 (628)
.+++.|++++|.+++ +|..+ +++|+.|++++|.+. .+| ..+++|+.|++++|.+++. +. +.. +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEE
Confidence 489999999999985 66655 489999999999998 777 2379999999999999873 33 443 999999
Q ss_pred ccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcC
Q 039739 416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 495 (628)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 495 (628)
+++|.+++ +|. .+++|++|++++|.+.+ +|. .+++|++|++++|.+++ .|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 99999985 555 57889999999998875 444 56888889999888885 444 54 88888888888887
Q ss_pred CCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccC
Q 039739 496 SLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCK 575 (628)
Q Consensus 496 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~ 575 (628)
.+|. +. .+| ....+.|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus 194 ~lp~-~~-~~L------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA-VP-VRN------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh-HH-Hhh------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 4443 22 133 111122355555555554 23444444555555555555555444444443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1e-16 Score=169.72 Aligned_cols=190 Identities=19% Similarity=0.219 Sum_probs=122.3
Q ss_pred CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL 440 (628)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 440 (628)
.+..+.+..+.+.+..+ ...+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34445556555553322 22367777888887777653 346677888888888887775433 677778888888
Q ss_pred cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739 441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520 (628)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 520 (628)
++|.+.+ + ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+. +....+++|+.|+|++|.+.+..
T Consensus 95 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 95 DENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred cCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence 8877763 2 2577777788888887777643 3467777777777777777643 33334666666666666665333
Q ss_pred CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc
Q 039739 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG 567 (628)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 567 (628)
+ +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++..
T Consensus 170 ~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 2 55666666666666666643 246666666666666666653
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=3e-16 Score=151.53 Aligned_cols=173 Identities=24% Similarity=0.292 Sum_probs=118.3
Q ss_pred cCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCccc
Q 039739 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLE 436 (628)
Q Consensus 357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 436 (628)
..+++|+.|++++|.+. .++. +..+++|++|++++|.+++... +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 45667777777777765 4443 4457777777777777765433 6677777777777777764 22 367777777
Q ss_pred EEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739 437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML 516 (628)
Q Consensus 437 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 516 (628)
+|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..+ ...+++|+.|++++|.+
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 777777777643 4566777777777777777654 457777777777777777775444 44467777777777777
Q ss_pred cCCCCccccccCCCccEEECCCcccCCc
Q 039739 517 HGQLKRGTFFNSYSLVTLDLSYNRLNGN 544 (628)
Q Consensus 517 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 544 (628)
.+ ++. +..+++|+.|++++|.++..
T Consensus 191 ~~-l~~--l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 191 SD-LRA--LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CB-CGG--GTTCTTCSEEEEEEEEEECC
T ss_pred CC-Chh--hccCCCCCEEECcCCcccCC
Confidence 53 332 66677777777777777643
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1e-15 Score=142.11 Aligned_cols=134 Identities=23% Similarity=0.291 Sum_probs=71.8
Q ss_pred CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739 433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512 (628)
Q Consensus 433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 512 (628)
++|++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|+.|++++|+++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~----------------- 102 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV----------------- 102 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-----------------
Confidence 455555555555554444455555555555555555554444445555555555555555542
Q ss_pred CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 591 (628)
++...+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..|..+++|+.|++.+|++..
T Consensus 103 -------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 103 -------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 22222445555666666666555 445555555666666666666653333445556666666666665553
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=2.5e-16 Score=166.79 Aligned_cols=199 Identities=22% Similarity=0.270 Sum_probs=161.1
Q ss_pred CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEc
Q 039739 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416 (628)
Q Consensus 337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 416 (628)
.+..+.+..+.+....+ +..+++|+.|+++++.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34555666666654332 466789999999999987 5654 5569999999999999987544 788999999999
Q ss_pred cCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739 417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 496 (628)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 496 (628)
++|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 9999875 33 688999999999999999753 4688999999999999999865 5789999999999999999876
Q ss_pred CCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCC
Q 039739 497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGL 552 (628)
Q Consensus 497 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 552 (628)
.+ ...+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+...+...+..+
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred hh-hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcCCcccccccE
Confidence 56 5558999999999999964 43 28889999999999999986544444433
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=2.7e-16 Score=157.16 Aligned_cols=174 Identities=26% Similarity=0.189 Sum_probs=85.3
Q ss_pred EEECcCCcccCccchhhhcCCccccEEEccCCccCCccccccc-CCCCCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 442 (628)
Q Consensus 364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 442 (628)
.++++++.+. .+|..+ .+.++.|++++|.++......+. .+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 22 ~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4444444443 344322 23345555555555444333343 455555555555555544444555555555555555
Q ss_pred CcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC----CCCcccEEecCCCcCcC
Q 039739 443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF----HPLSVEQVHLSKNMLHG 518 (628)
Q Consensus 443 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~n~~~~ 518 (628)
|.+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|++....+..+ .+++|+.|++++|++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 55554444455555556666666655554445555556666666666665553222222 1334444444444443
Q ss_pred CCCccccccCCC--ccEEECCCcccC
Q 039739 519 QLKRGTFFNSYS--LVTLDLSYNRLN 542 (628)
Q Consensus 519 ~~~~~~~~~~~~--L~~L~l~~~~~~ 542 (628)
.++...+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 233222444444 355666666554
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.9e-16 Score=150.33 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=96.6
Q ss_pred CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEE
Q 039739 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIM 463 (628)
Q Consensus 384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 463 (628)
+.++..++++++.+++.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455666667776665432 45567777777777777663 33 46667777777777777664433 66677777777
Q ss_pred CCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739 464 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543 (628)
Q Consensus 464 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 543 (628)
+++|.+.+..+ +.. ++|+.|++++|++.+ .+....+++|+.|++++|++.+ ++ .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcc
Confidence 77777664322 222 666666666666653 2223335555555555555532 22 24455555555555555553
Q ss_pred ccchhhcCCCCCcEEECCCCcCC
Q 039739 544 NISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 544 ~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
. ..+..+++|+.|++++|+++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 3 34455555555555555554
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3e-16 Score=142.26 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEE
Q 039739 407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL 486 (628)
Q Consensus 407 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 486 (628)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444444444444444 222 3444444444444444332 11234444444444444444443334444444444444
Q ss_pred EccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcc-cCCccchhhcCCCCCcEEECCCCcC
Q 039739 487 DISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR-LNGNISDWVDGLSQLSHLILGHNNL 565 (628)
Q Consensus 487 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~i 565 (628)
++++|++++ ..+.. +..+++|+.|++++|. ++ .++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~-----------------------~~~~~-l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 118 DISHSAHDD-----------------------SILTK-INTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp ECCSSBCBG-----------------------GGHHH-HTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred EecCCccCc-----------------------HhHHH-HhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 444444432 22222 4555666666666665 44 233 456666666666666666
Q ss_pred CccCCccccCCCCCcEEECCCCccc
Q 039739 566 EGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 566 ~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
++ ++ .+..+++|++|++++|++.
T Consensus 172 ~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-CT-TGGGCSSCCEEEECBC---
T ss_pred cC-hH-HhccCCCCCEEEeeCcccC
Confidence 62 33 5666666666666666654
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=5.3e-16 Score=155.03 Aligned_cols=175 Identities=22% Similarity=0.185 Sum_probs=105.7
Q ss_pred cEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccccc-CCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739 388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS-KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466 (628)
Q Consensus 388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 466 (628)
+.++++++.++... ..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777766432 222 24577788888877765555565 777777888777777766666677777777777777
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCcccc---ccCCCccEEECCCcccC
Q 039739 467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTF---FNSYSLVTLDLSYNRLN 542 (628)
Q Consensus 467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 542 (628)
|.+....+..|..+++|+.|++++|++....+..+. +++|+.|++++|++. .++...+ ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777765566677777777777777777654444333 455555555555553 2333323 33455555555555555
Q ss_pred CccchhhcCCCCC--cEEECCCCcCC
Q 039739 543 GNISDWVDGLSQL--SHLILGHNNLE 566 (628)
Q Consensus 543 ~~~~~~~~~l~~L--~~L~l~~~~i~ 566 (628)
+..+..+..++.+ +.|++.+|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 4444444444442 44555555544
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.2e-16 Score=155.75 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=151.0
Q ss_pred CCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCC--CCCCcccccCCccCEEEccCCcCCcccchhhhhh----
Q 039739 261 QHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG--GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDV---- 334 (628)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~---- 334 (628)
.++++.|.+++. +.......+...+++|+.|+++++.+. .... ...+.+..+.+..+ .+|...+..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhcccccc
Confidence 345666766643 111112222222667777777777665 1111 11222333333333 333344344
Q ss_pred ----CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCc----cCCccccccc
Q 039739 335 ----LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNS----LEGHMFSRNF 406 (628)
Q Consensus 335 ----~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----l~~~~~~~~~ 406 (628)
+++|+.+++.. .++...+.+|.+|++|+.++++++.+. .++...|.++.++..+...... ........+.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 56666666666 555444455666666666666666665 5555556555555555544321 1111122333
Q ss_pred CCCCCc-EEEccCccCcC-cccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCC
Q 039739 407 NLTNLR-WLQLEGNHFVG-EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 484 (628)
Q Consensus 407 ~~~~L~-~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 484 (628)
++..|+ .+.+....... .....-....+++.+.+.+.-...........+++|+.+++++|.+....+..|.+|++|+
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 444444 33332211100 0000001223344444443321111111112255666666666555545555566666666
Q ss_pred EEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCcc-EEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739 485 ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLV-TLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563 (628)
Q Consensus 485 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 563 (628)
.+++.+| + ..++..+|.++++|+ .+++.+ .++...+..|.++++|+.+++.+|
T Consensus 254 ~l~l~~n-i------------------------~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 254 KIKLPHN-L------------------------KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EEECCTT-C------------------------CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred EEECCcc-c------------------------ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 6665554 2 256666788888888 888887 666566678888888888888888
Q ss_pred cCCccCCccccCCCCCcEEEC
Q 039739 564 NLEGEVPVQLCKLNQLQLLDL 584 (628)
Q Consensus 564 ~i~~~~~~~l~~l~~L~~L~l 584 (628)
+++...+..|.++++|+.++-
T Consensus 308 ~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 308 KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCCEECTTTTCTTCCCCEEEC
T ss_pred ccCccchhhhcCCcchhhhcc
Confidence 888666778888888888763
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=138.93 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=77.9
Q ss_pred ccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEcc
Q 039739 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN 441 (628)
Q Consensus 362 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 441 (628)
++.|++++|.+....+...+..+++|++|++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 44555555555422233334445555555555555554444455556666666666666655555556666666666666
Q ss_pred CCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 442 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
+|.+.+..+..+.++++|++|++++|.+.+..|..|..+++|+.|++++|++.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66666555566666666666666666666555666666666666666666655
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=2.3e-15 Score=138.71 Aligned_cols=133 Identities=22% Similarity=0.226 Sum_probs=68.7
Q ss_pred CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL 440 (628)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 440 (628)
+++.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 4444444444444 333333334445555555555444444444445555555555555555333344455555555555
Q ss_pred cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555444555555555555555555555544445555556666666555543
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.4e-15 Score=137.78 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414 (628)
Q Consensus 335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 414 (628)
+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 445666666666655 333 4555666666666666543 332 23346666666666666665555566666777777
Q ss_pred EccCccCcCcccccccCCCcccEEEccCCc-CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcC
Q 039739 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI 493 (628)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 493 (628)
++++|.+.+..+..+..+++|++|++++|. +. ..+ .+.++++|++|++++|.+.+.. .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 777777665556666667777777777776 43 333 4666777777777777766432 566677777777777765
Q ss_pred c
Q 039739 494 S 494 (628)
Q Consensus 494 ~ 494 (628)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=6.4e-16 Score=152.47 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=78.4
Q ss_pred hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcccc-EEEccCCccCCcccccccCCCCCc
Q 039739 334 VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLE-SLALSNNSLEGHMFSRNFNLTNLR 412 (628)
Q Consensus 334 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~ 412 (628)
.+++|+.+++.+|.++.....+|.+|++|+.++++++ +. .++...|.+|++|+ .+.+.. .++......|.+|++|+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 3677888888877777555567788888888888776 54 67777777788888 888876 56666667777888888
Q ss_pred EEEccCccCcCcccccccCCCcccEEEc
Q 039739 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFL 440 (628)
Q Consensus 413 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l 440 (628)
.+++.++.+....+.+|.+|++|+.++.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888777777666677888888887764
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=6.8e-15 Score=136.60 Aligned_cols=152 Identities=24% Similarity=0.196 Sum_probs=95.6
Q ss_pred ccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739 387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466 (628)
Q Consensus 387 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 466 (628)
-+.++.+++.+..... .+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..|.++++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3456666555543222 11 26677777777777666666677777777777777777655555667777888888888
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc
Q 039739 467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS 546 (628)
Q Consensus 467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 546 (628)
|.+....+..|..+++|++|++++|++.. ++.. +..+++|+.|++++|++++..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~------------------------lp~~-~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE------------------------LPRG-IERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS------------------------CCTT-GGGCTTCSEEECCSSCCCCCCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc------------------------cCcc-cccCCCCCEEECCCCcCCccCH
Confidence 87776666667777888888887777662 2222 3445555666666665554444
Q ss_pred hhhcCCCCCcEEECCCCcCC
Q 039739 547 DWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 547 ~~~~~l~~L~~L~l~~~~i~ 566 (628)
..+..+++|+.|++++|++.
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBC
T ss_pred HHHhCCCCCCEEEeeCCCcc
Confidence 45555566666666666555
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.3e-15 Score=144.54 Aligned_cols=170 Identities=19% Similarity=0.204 Sum_probs=112.8
Q ss_pred CCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEE
Q 039739 359 MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGL 438 (628)
Q Consensus 359 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 438 (628)
++++..++++++.+. .++. +..+++|++|++++|.++... .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345666667777665 3432 334677777777777776532 56667777777777777764433 6777777777
Q ss_pred EccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcC
Q 039739 439 FLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHG 518 (628)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 518 (628)
++++|.+.+. +. +.. ++|++|++++|.+.+. ..+..+++|+.|++++|++++. +....+++|+.|++++|++.+
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc
Confidence 7777777642 22 222 7777777777777643 2477777777788777777643 333346777777777777754
Q ss_pred CCCccccccCCCccEEECCCcccCCc
Q 039739 519 QLKRGTFFNSYSLVTLDLSYNRLNGN 544 (628)
Q Consensus 519 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 544 (628)
. ..+..+++|+.|++++|.+...
T Consensus 165 ~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C---TTSTTCCCCCEEEEEEEEEECC
T ss_pred h---HHhccCCCCCEEeCCCCcccCC
Confidence 4 2366777777777777777644
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=7.3e-14 Score=140.44 Aligned_cols=265 Identities=11% Similarity=0.084 Sum_probs=137.6
Q ss_pred CccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEE
Q 039739 286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQIL 365 (628)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 365 (628)
+..++.+.+.+. ++.....++.++ +|+.+.+..+ +. .++...+.. .+|+.+.+.. .+......+|..|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 344555554432 222223334443 4666666544 33 333333332 2566666654 3443444556666666666
Q ss_pred ECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcC
Q 039739 366 DLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 445 (628)
Q Consensus 366 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 445 (628)
+++++.+. .++...|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.. .+|+.+.+.+ .+
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 66666655 55555554 466666666533 44444455556666666666543 33233344444 4555555532 23
Q ss_pred CCccCccccCCCCcceEECCCCcCC-----CCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739 446 SGKIPRWLGNLTRLQHIMMPKNHLE-----GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520 (628)
Q Consensus 446 ~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 520 (628)
......+|.+|++|+.+.+.++.+. .....+|.+|++|+.+++.++ + ..+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~------------------------i-~~I 314 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES------------------------I-RIL 314 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT------------------------C-CEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc------------------------e-EEE
Confidence 3233445555555555555544332 123333444444444444321 2 245
Q ss_pred CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCC-CCcEEECCCCcc
Q 039739 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNSL 589 (628)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~ 589 (628)
+..+|.+|++|+.+.+..+ ++......|.++ +|+.+++.+|.+.......|..++ +++.|++..+.+
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5555777777777777544 554455667777 777777777766655556666664 566666665443
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.2e-13 Score=139.82 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=72.2
Q ss_pred hHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccc
Q 039739 49 QSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRIL 128 (628)
Q Consensus 49 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 128 (628)
.+|.. |.+|+.+.+..+ +. .+...+|.+|.+|+.+++..+ +..-....+.. |..|+.+.+..+ +.. +.
T Consensus 65 ~AF~~-c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~-c~~L~~i~~p~~-l~~----i~ 132 (394)
T 4fs7_A 65 AAFQG-CRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS---VKMIGRCTFSG-CYALKSILLPLM-LKS----IG 132 (394)
T ss_dssp TTTTT-CTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT---CCEECTTTTTT-CTTCCCCCCCTT-CCE----EC
T ss_pred HHhhC-CCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC---ceEccchhhcc-cccchhhcccCc-eee----ec
Confidence 34444 555555555432 21 233335556666666655442 11111222333 555555544322 111 22
Q ss_pred cccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCC
Q 039739 129 DRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFN 208 (628)
Q Consensus 129 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 208 (628)
..+|..+..++....... .......|..|++|+.+.+..+. . .++..++..+.+|+.+.+..+ +. .+....+.+
T Consensus 133 ~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~ 206 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAE 206 (394)
T ss_dssp TTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTT
T ss_pred ceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhcc
Confidence 234445443333222221 11223456666777777765543 2 455556677777777766654 21 334445666
Q ss_pred CCcccEEeccC
Q 039739 209 HSRLKSFYADN 219 (628)
Q Consensus 209 l~~L~~L~l~~ 219 (628)
+..|+.+.+..
T Consensus 207 ~~~L~~i~~~~ 217 (394)
T 4fs7_A 207 CILLENMEFPN 217 (394)
T ss_dssp CTTCCBCCCCT
T ss_pred ccccceeecCC
Confidence 66666655543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1e-14 Score=128.51 Aligned_cols=138 Identities=23% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCcccEEEccCCcCC-CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEe
Q 039739 432 CFVLEGLFLNNNSLS-GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVH 510 (628)
Q Consensus 432 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 510 (628)
.++|++|++++|.+. +.++..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~---------------- 84 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF---------------- 84 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC----------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc----------------
Confidence 356666666666665 34555556666666666666665543 44555666666666666554
Q ss_pred cCCCcCcCCCCccccccCCCccEEECCCcccCCccc-hhhcCCCCCcEEECCCCcCCccCC---ccccCCCCCcEEECCC
Q 039739 511 LSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS-DWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSN 586 (628)
Q Consensus 511 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~ 586 (628)
+.++.. +..+++|+.|++++|.+++... ..+..+++|+.|++++|++++..+ ..+..+++|++|++++
T Consensus 85 -------~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 85 -------GGLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp -------SCCCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred -------hHHHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 333332 5668889999999998886432 678888999999999999884433 3788899999999999
Q ss_pred Cccccccccc
Q 039739 587 NSLHGSIPLC 596 (628)
Q Consensus 587 ~~~~~~ip~~ 596 (628)
|.+. .+|+.
T Consensus 157 n~~~-~~~~~ 165 (168)
T 2ell_A 157 REDQ-EAPDS 165 (168)
T ss_dssp TTSC-BCCSS
T ss_pred CChh-hcccc
Confidence 9887 67764
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.2e-13 Score=139.73 Aligned_cols=314 Identities=15% Similarity=0.113 Sum_probs=169.6
Q ss_pred cccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCc
Q 039739 127 ILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPF 206 (628)
Q Consensus 127 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 206 (628)
+...+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ +. .++..++..+.+|+.+.+..+-. .+....|
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~--~i~~~aF 136 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLK--SIGVEAF 136 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCC--EECTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCcee--eecceee
Confidence 33456666666666666543 43344455666666666666543 33 45555666666666655544311 1222333
Q ss_pred CCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcC
Q 039739 207 FNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 286 (628)
Q Consensus 207 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 286 (628)
.++..++...... ........+..|++|+.+.+..+.. .++...+..+
T Consensus 137 ~~~~~~~~~~~~~------------------------------~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c 184 (394)
T 4fs7_A 137 KGCDFKEITIPEG------------------------------VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGC 184 (394)
T ss_dssp TTCCCSEEECCTT------------------------------CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTC
T ss_pred ecccccccccCcc------------------------------ccccchhhhcccCCCcEEecCCccc--eeccccccCC
Confidence 3333222211111 0111123455667777777754421 3444445667
Q ss_pred ccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEE
Q 039739 287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366 (628)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 366 (628)
++|+.+.+..+ ++.....++..+..|+.+.+..+.. .+.+.... ...|+.+.+.... +.....++..+..++.+.
T Consensus 185 ~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~-~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 185 GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALS-KTGVKNIIIPDSF-TELGKSVFYGCTDLESIS 259 (394)
T ss_dssp TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTT-TCCCCEEEECTTC-CEECSSTTTTCSSCCEEE
T ss_pred CCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhcc-cCCCceEEECCCc-eecccccccccccceeEE
Confidence 77777766543 3333344566677777766655422 22222222 4567777665432 223334566777777777
Q ss_pred CcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC
Q 039739 367 LSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446 (628)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 446 (628)
+..+.. .+....+..+..++.+......+. ...+..+.+|+.+.+..+ +......+|.+|.+|+.+++.++ +.
T Consensus 260 ~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 260 IQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp ECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred cCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 766532 344555666777777666554332 234456677777776543 33344556667777777777543 44
Q ss_pred CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccC
Q 039739 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 490 (628)
Q Consensus 447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 490 (628)
.....+|.+|.+|+.+.+..+ +......+|.+|++|+.+++..
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 344556777777777777655 4445555677777777776654
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=3.1e-13 Score=135.84 Aligned_cols=249 Identities=12% Similarity=0.087 Sum_probs=158.9
Q ss_pred cCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcccc
Q 039739 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLE 388 (628)
Q Consensus 309 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 388 (628)
.+..++.+.+.+. ++ .++...+..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .+....|.+|++|+
T Consensus 111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence 3456666766543 33 3444333333 5777776554 443444456554 577777765 343 55556666677777
Q ss_pred EEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739 389 SLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH 468 (628)
Q Consensus 389 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 468 (628)
.+++..+.++......|. +.+|+.+.+..+ +......+|..|++|+.+++.++ +......+|.+ .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 777776666554444444 466777776543 44344556666667777666653 33344445555 566666663 33
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739 469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW 548 (628)
Q Consensus 469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 548 (628)
+......+|..|++|+.+++.++.... +.. ..++..+|.+|++|+.+.+.+ .++......
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~------------------~~~-~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a 318 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFND------------------DPE-AMIHPYCLEGCPKLARFEIPE-SIRILGQGL 318 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCC------------------CTT-CEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccC------------------Ccc-cEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence 443445556666666666666554330 001 247777799999999999995 477667788
Q ss_pred hcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739 549 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591 (628)
Q Consensus 549 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 591 (628)
|.++++|+.+++..+ ++......|.++ +|+.+++.++....
T Consensus 319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 999999999999655 775678899999 99999999998874
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3e-14 Score=125.42 Aligned_cols=140 Identities=22% Similarity=0.150 Sum_probs=116.6
Q ss_pred CCCCCcEEEccCccCc-CcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCE
Q 039739 407 NLTNLRWLQLEGNHFV-GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 485 (628)
Q Consensus 407 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 485 (628)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4588999999999997 56788889999999999999999855 78899999999999999999777777878999999
Q ss_pred EEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc---hhhcCCCCCcEEECCC
Q 039739 486 LDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS---DWVDGLSQLSHLILGH 562 (628)
Q Consensus 486 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~ 562 (628)
|++++|++.+.. ....+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 100 L~Ls~N~l~~~~-----------------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 100 LNLSGNKLKDIS-----------------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EECBSSSCCSSG-----------------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EeccCCccCcch-----------------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 999999886321 11226778889999999999886655 4788899999999999
Q ss_pred CcCCccCCcc
Q 039739 563 NNLEGEVPVQ 572 (628)
Q Consensus 563 ~~i~~~~~~~ 572 (628)
|.+. ..|+.
T Consensus 157 n~~~-~~~~~ 165 (168)
T 2ell_A 157 REDQ-EAPDS 165 (168)
T ss_dssp TTSC-BCCSS
T ss_pred CChh-hcccc
Confidence 9887 56654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=1e-13 Score=124.77 Aligned_cols=130 Identities=24% Similarity=0.317 Sum_probs=74.5
Q ss_pred cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcc-cccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCC
Q 039739 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKN 514 (628)
Q Consensus 436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 514 (628)
++++++++.+. .+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|++++..+..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------- 73 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-------------- 73 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH--------------
Confidence 56777777664 4444333 2667777777776654443 3666667777777766666443333
Q ss_pred cCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccc
Q 039739 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS 592 (628)
Q Consensus 515 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 592 (628)
+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..|+.|..+++|++|++++|++...
T Consensus 74 ----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 74 ----------FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ----------TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ----------cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 44555555555555555554444555555555555555555555555555555555555555555543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=4.7e-14 Score=121.44 Aligned_cols=128 Identities=23% Similarity=0.219 Sum_probs=76.3
Q ss_pred CcccEEEccCCcCC-CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEec
Q 039739 433 FVLEGLFLNNNSLS-GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHL 511 (628)
Q Consensus 433 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 511 (628)
+++++|++++|.+. +..+..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~----------------- 77 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS----------------- 77 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC-----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc-----------------
Confidence 44555555555554 33444444455555555555544433 33444444444444444443
Q ss_pred CCCcCcCCCCccccccCCCccEEECCCcccCCc-cchhhcCCCCCcEEECCCCcCCccCC---ccccCCCCCcEEECCC
Q 039739 512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN-ISDWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSN 586 (628)
Q Consensus 512 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~ 586 (628)
+.++.. +..+++|+.|++++|.+++. .+..++.+++|+.|++++|++++..+ ..+..+++|++|++++
T Consensus 78 ------~~~~~~-~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 78 ------GGLEVL-AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ------SCTHHH-HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ------chHHHH-hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 333332 55677888888888887753 33677888888888888888874433 4677788888887753
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=3.5e-16 Score=164.70 Aligned_cols=184 Identities=22% Similarity=0.174 Sum_probs=123.9
Q ss_pred CCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc-------------CCCccCccccCCCCcceEE-CCCCcCCCC
Q 039739 407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-------------LSGKIPRWLGNLTRLQHIM-MPKNHLEGP 472 (628)
Q Consensus 407 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~ 472 (628)
.++.|+.|++++|.+. .+|..+..+++|+.|++++|. ..+..+..+.++++|+.|+ ++.+.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 4555556666665554 455555556666666554442 3334455566666666666 444322110
Q ss_pred Ccc-----ccc--CCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCcc
Q 039739 473 IPV-----EFC--QLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNI 545 (628)
Q Consensus 473 ~~~-----~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 545 (628)
... .+. ....|+.|++++|.+++ +|....+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+++ +
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-C
Confidence 000 000 11257888888888875 455444778888888888886 66665 8889999999999999986 5
Q ss_pred chhhcCCCCCcEEECCCCcCCccC-CccccCCCCCcEEECCCCcccccccccc
Q 039739 546 SDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNSLHGSIPLCL 597 (628)
Q Consensus 546 ~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~ip~~~ 597 (628)
| .++.+++|+.|++++|++++.. |..|..+++|+.|++++|++.+ +|+..
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~ 552 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQ 552 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCT
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-CccHH
Confidence 5 7889999999999999998665 8899999999999999999984 45443
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.4e-15 Score=159.99 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=95.5
Q ss_pred ccCCccCEEEccCCcCCcccchhhhhhCCCccEEEccccc-------------CCCcccccccCCCCccEEE-CcCCccc
Q 039739 308 HSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNA-------------LDGSIPSSFGNMKFLQILD-LSNNHLT 373 (628)
Q Consensus 308 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~ 373 (628)
..++.|+.|++++|.+. .+|..+.. +++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 35667777777777765 67766665 6677777765543 2334455555566666665 4443322
Q ss_pred Cccchhhh-----c--CCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC
Q 039739 374 GEIPEHLV-----V--GCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446 (628)
Q Consensus 374 ~~~~~~~~-----~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 446 (628)
.++...+ . ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1111000 0 012355555555555542 22 455555555555555555 44555555555555555555555
Q ss_pred CccCccccCCCCcceEECCCCcCCCCC-cccccCCCCCCEEEccCCcCcC
Q 039739 447 GKIPRWLGNLTRLQHIMMPKNHLEGPI-PVEFCQLDWLQILDISDNNISG 495 (628)
Q Consensus 447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 495 (628)
+ +| .+.++++|+.|++++|.+.+.. |..+..+++|+.|++++|++++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 3 33 4555555555555555555443 5555555555555555555543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=4.2e-13 Score=119.17 Aligned_cols=114 Identities=28% Similarity=0.286 Sum_probs=74.1
Q ss_pred CCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEEC
Q 039739 457 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536 (628)
Q Consensus 457 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 536 (628)
++|++|++++|.+.+..+..+..+++|++|++++|++. .++...+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ------------------------SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC------------------------CCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce------------------------EeChhHccCCCccCEEEC
Confidence 34555555555554433334445555555555555443 333333667778888888
Q ss_pred CCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594 (628)
Q Consensus 537 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip 594 (628)
++|++++.++..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888876666667788888888888888885444456778888888888888876544
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=7.5e-14 Score=125.62 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=89.9
Q ss_pred cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccc-cccCCCCCcEEEccCccCcCcccccccCCCcccEEEcc
Q 039739 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFS-RNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN 441 (628)
Q Consensus 363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 441 (628)
+.++++++.+. .+|..+ .+++++|++++|.+...... .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45666666664 555433 23667777777766654443 35667777777777777776667777777777777777
Q ss_pred CCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcC
Q 039739 442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 495 (628)
Q Consensus 442 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 495 (628)
+|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 777776666667777777777777777776667777777778888887777764
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.1e-13 Score=120.05 Aligned_cols=42 Identities=36% Similarity=0.305 Sum_probs=22.1
Q ss_pred cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
|..+++|+.|++++|.++...+..|..+++|+.|++++|++.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 444555555555555555444444555555555555555554
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=9.2e-14 Score=119.58 Aligned_cols=131 Identities=21% Similarity=0.137 Sum_probs=109.6
Q ss_pred CCCCCcEEEccCccCc-CcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCE
Q 039739 407 NLTNLRWLQLEGNHFV-GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 485 (628)
Q Consensus 407 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 485 (628)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+.++++|++|++++|.+.+..|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999998 67888889999999999999999855 77899999999999999999777877888999999
Q ss_pred EEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc---hhhcCCCCCcEEECCC
Q 039739 486 LDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS---DWVDGLSQLSHLILGH 562 (628)
Q Consensus 486 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~ 562 (628)
|++++|++++.. .+. .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~----------------------~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLS----------------------TIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHH----------------------HHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChH----------------------HHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999876310 112 26778889999999998886655 5788889999988763
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=3e-14 Score=154.94 Aligned_cols=111 Identities=27% Similarity=0.334 Sum_probs=50.4
Q ss_pred CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEE
Q 039739 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIM 463 (628)
Q Consensus 384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 463 (628)
++.|+.|++++|.+.. .+..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.++++|++|+
T Consensus 223 l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 4444444444444432 2222234444444444444444 34444444444555555554444 3344444455555555
Q ss_pred CCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCC
Q 039739 464 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP 498 (628)
Q Consensus 464 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 498 (628)
+++|.+. .+|..|..+++|+.|++++|++.+..|
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 5555444 333344455555555555554444333
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=3.9e-14 Score=154.00 Aligned_cols=178 Identities=21% Similarity=0.240 Sum_probs=93.4
Q ss_pred cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCC
Q 039739 402 FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 481 (628)
Q Consensus 402 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 481 (628)
...+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+.++++|+.|++++|.+. .+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 445567778888888888776 55655667788888888888777 66777777888888888888877 5577777788
Q ss_pred CCCEEEccCCcCcCCCCCCC-CCCcccEEecCCCcCcCCCCccccccC-CCccEEECCCcccCCccchhhcCCCCCcEEE
Q 039739 482 WLQILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNS-YSLVTLDLSYNRLNGNISDWVDGLSQLSHLI 559 (628)
Q Consensus 482 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 559 (628)
+|++|++++|.+. .+|..+ .+++|+.|+|++|.+.+.++.. +... ..+..|++++|.+++.+|.. |+.|+
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~ 365 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE 365 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence 8888888888776 334333 3666777777777766555443 2221 11223556666666555543 33444
Q ss_pred CCCC--------cCCccCCccccCCCCCcEEECCCCccc
Q 039739 560 LGHN--------NLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 560 l~~~--------~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
+++| .+....+..+.++..++...+++|-+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5444 223233333444455555556666554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=4.6e-13 Score=118.73 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch--hhcCCCCCcEEE
Q 039739 482 WLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD--WVDGLSQLSHLI 559 (628)
Q Consensus 482 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~ 559 (628)
+|+.|++++|.+.+. +....++.|+.|++++|.+. .+++..+..+++|+.|++++|.++. +|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 444444444444432 22222444555555555553 3444445788999999999999874 444 788899999999
Q ss_pred CCCCcCCccCCcc----ccCCCCCcEEECCCCccc
Q 039739 560 LGHNNLEGEVPVQ----LCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 560 l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~~~ 590 (628)
+++|+++ .+|.. +..+++|+.|++++|+..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999998 66764 888999999999998876
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=115.69 Aligned_cols=126 Identities=24% Similarity=0.238 Sum_probs=73.8
Q ss_pred EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCC
Q 039739 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 443 (628)
Q Consensus 364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 443 (628)
.++++++.+. .+|..+ .++|++|++++|.++. .+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4555555554 444332 3455666666665543 2244555666666666666666555555666666666666666
Q ss_pred cCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 444 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
.+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666555556666666666666666666544445666666666666666654
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=3.8e-12 Score=112.95 Aligned_cols=128 Identities=23% Similarity=0.207 Sum_probs=70.9
Q ss_pred cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 442 (628)
Q Consensus 363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 442 (628)
+.++++++.+. .+|... .++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555544 444322 34555566665555544444445556666666666665544444455566666666666
Q ss_pred CcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 443 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6665444445555666666666666665444444555666666666666554
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=1.2e-10 Score=117.75 Aligned_cols=131 Identities=14% Similarity=0.184 Sum_probs=69.9
Q ss_pred ccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCC
Q 039739 354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF 433 (628)
Q Consensus 354 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 433 (628)
.+|..|..|+.+.+..... .+....+.+++.|+.+.+.. .++......|.+|.+|+.+.+..+ ++.+...+|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 3455666666666654322 34445555566666666642 333344455566666666666543 3333445666777
Q ss_pred cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCc
Q 039739 434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 492 (628)
Q Consensus 434 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 492 (628)
+|+.+.+..+ +......+|.+|++|+.+++.++... ...+..+..|+.+.+..+.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 7777777543 44345566777777777777765432 1345566677777766553
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.3e-12 Score=113.11 Aligned_cols=133 Identities=19% Similarity=0.173 Sum_probs=90.8
Q ss_pred ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739 356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435 (628)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 435 (628)
+..+++|+.|++++|.+. .++. +....++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455667777777777776 4443 222234778888887777653 566677788888888887775444445777788
Q ss_pred cEEEccCCcCCCccCc--cccCCCCcceEECCCCcCCCCCcc----cccCCCCCCEEEccCCcCc
Q 039739 436 EGLFLNNNSLSGKIPR--WLGNLTRLQHIMMPKNHLEGPIPV----EFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 436 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~ 494 (628)
++|++++|.+. ..+. .+..+++|++|++++|.+.. .|. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888775 3343 67777888888888887763 333 3677788888888777654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=1.7e-14 Score=130.72 Aligned_cols=131 Identities=24% Similarity=0.323 Sum_probs=78.6
Q ss_pred cccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCC
Q 039739 452 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYS 530 (628)
Q Consensus 452 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 530 (628)
.+..+++|++|++++|.+.+ .| .+..+++|+.|++++|.+. ..|..+. +++|+.|++++|++.+ ++ . +..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-G-IEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-H-HHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-c-cccCCC
Confidence 34444444455554444443 22 4444555555555555544 2222221 3455555555555533 33 2 667788
Q ss_pred ccEEECCCcccCCccc-hhhcCCCCCcEEECCCCcCCccCCc----------cccCCCCCcEEECCCCccc
Q 039739 531 LVTLDLSYNRLNGNIS-DWVDGLSQLSHLILGHNNLEGEVPV----------QLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 531 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~----------~l~~l~~L~~L~l~~~~~~ 590 (628)
|+.|++++|.+++..+ ..+..+++|+.|++++|++++..|. .+..+++|+.|+ +++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888875433 4678888888888888888755444 277888888887 66665
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=7.5e-11 Score=119.18 Aligned_cols=293 Identities=14% Similarity=0.127 Sum_probs=133.0
Q ss_pred ccccCC-CccEEEccCCcccCcCchhHHhcCccCcEEEeecCC---CCCCCCcccccCCccCEEEccCCcCCcccchhhh
Q 039739 257 FLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDS---LGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIG 332 (628)
Q Consensus 257 ~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 332 (628)
++..++ .|+.+.+... +. .+...-|.+|++|+.+.+..+. ++.....++..|..|+.+.+..+ +. .++...+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence 344453 4677766543 22 3333334666777777665432 33334445666666666655443 22 3333333
Q ss_pred hhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCc
Q 039739 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLR 412 (628)
Q Consensus 333 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 412 (628)
..+.+|+.+.+... +.......+..+.+|+.+.+..+ +. .+....|. ...|+.+.+... ........+..+.+++
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCc-ccccccchhhhccccc
Confidence 34566666666533 22233345666666666666543 22 34444443 345666665433 2223334444555555
Q ss_pred EEEccCccCcCcccccc-------------cCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccC
Q 039739 413 WLQLEGNHFVGEIPQSL-------------SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479 (628)
Q Consensus 413 ~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 479 (628)
................+ .....+..+.+.+. +......+|.++..|+.+.+.+.... .....|.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCccccc
Confidence 55544332221100000 11112222222211 11122334555555555555543322 33444555
Q ss_pred CCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEE
Q 039739 480 LDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLI 559 (628)
Q Consensus 480 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 559 (628)
++.|+.+.+.. .+. .++..+|.+|.+|+.+.+..+ ++.....+|.++++|+.+.
T Consensus 287 c~~L~~i~l~~-~i~------------------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 287 CPALQDIEFSS-RIT------------------------ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CTTCCEEECCT-TCC------------------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccCCC-ccc------------------------ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 55555555532 222 344444555555555555432 3323334455555555555
Q ss_pred CCCCcCCccCCccccCCCCCcEEECCCC
Q 039739 560 LGHNNLEGEVPVQLCKLNQLQLLDLSNN 587 (628)
Q Consensus 560 l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 587 (628)
+..+ ++......|.+|++|+.+++.++
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 5322 33233444555555555555444
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=4.8e-13 Score=133.15 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCCcEEecCCCCCCCcchhHhhcc----CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhh--
Q 039739 31 TNLEYLTLDSSSLHISLLQSIASI----FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIG-- 104 (628)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-- 104 (628)
++|++|++++|.++......++.. +++|+.|++++|.+...........+++|++|+|++| .+.+.....++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n--~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN--SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS--CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC--CCCHHHHHHHHHH
Confidence 344455555554443333333321 1345555555544432211111223344555555555 33322222221
Q ss_pred --ccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccccc----CchhhhcCCCCCEEEccccccccc---
Q 039739 105 --ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGS----LPWCLANMTSLRILDVSSNQLTGS--- 175 (628)
Q Consensus 105 --~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~--- 175 (628)
...++|++|++++|.++..+.......+..+++|++|+|++|.+.+. ++..+..+++|++|++++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 11345555555555553222222223344555566666666655432 233444555666666666655421
Q ss_pred -cCCCCCCCCCcccEEEcccCeee
Q 039739 176 -ISSSPLVHLTSIEELYLSNNHFQ 198 (628)
Q Consensus 176 -l~~~~l~~l~~L~~L~l~~~~~~ 198 (628)
+.. .+...++|++|++++|.++
T Consensus 230 ~l~~-~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALAR-AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHH-HHHHCSSCCEEECTTSSCC
T ss_pred HHHH-HHHhCCCCCEEeccCCCCC
Confidence 111 2334455666666666554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=3.5e-11 Score=105.55 Aligned_cols=104 Identities=26% Similarity=0.302 Sum_probs=72.3
Q ss_pred CEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739 484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563 (628)
Q Consensus 484 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 563 (628)
+.++++++.++. +|..+ +..++.|++++|.+.+..+ ..+..+++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555542 22222 3555666666666643333 33777888888888888888777777788888888888888
Q ss_pred cCCccCCccccCCCCCcEEECCCCccc
Q 039739 564 NLEGEVPVQLCKLNQLQLLDLSNNSLH 590 (628)
Q Consensus 564 ~i~~~~~~~l~~l~~L~~L~l~~~~~~ 590 (628)
++++..++.|..+++|++|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888555556888888888888888887
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=2.6e-13 Score=122.95 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=91.5
Q ss_pred cccCCCCcEEecCCCCCCCcchh------HhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchh
Q 039739 27 LHNFTNLEYLTLDSSSLHISLLQ------SIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFL 100 (628)
Q Consensus 27 ~~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 100 (628)
+...+.++.++++.+.+++..+. .+.. +++|++|++++|.+.. ++ .+.++++|++|++++|. +. .++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~--l~-~l~ 86 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNL--IK-KIE 86 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEE--EC-SCS
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCC--cc-ccc
Confidence 44455666666666555554443 6666 7777777777776665 33 56777777777777773 32 344
Q ss_pred hhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCc-hhhhcCCCCCEEEccccccccccCCC
Q 039739 101 QIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSS 179 (628)
Q Consensus 101 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~~ 179 (628)
..+.. +++|++|++++|.+.. ++ .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|..
T Consensus 87 ~~~~~-~~~L~~L~L~~N~l~~----l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 87 NLDAV-ADTLEELWISYNQIAS----LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp SHHHH-HHHCSEEEEEEEECCC----HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred chhhc-CCcCCEEECcCCcCCc----CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 44444 6677777777776654 43 46667777777777777663221 35666777777777777765443320
Q ss_pred ---------CCCCCCcccEEE
Q 039739 180 ---------PLVHLTSIEELY 191 (628)
Q Consensus 180 ---------~l~~l~~L~~L~ 191 (628)
.+..+++|+.|+
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC
T ss_pred cchHHHHHHHHHhCCCcEEEC
Confidence 144555666554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4.2e-11 Score=105.43 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=77.2
Q ss_pred CEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739 484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563 (628)
Q Consensus 484 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 563 (628)
+.++++++.+. .+|..+ +..++.|++++|++.+..+ ..+..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~-~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI-PTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCc-CCCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 44555555554 233222 2555666666666643333 33777888888888888888766666788888888999888
Q ss_pred cCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739 564 NLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601 (628)
Q Consensus 564 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~ 601 (628)
+++...+..|..+++|++|++++|++. ..|..+..+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~~~~~l~ 128 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD-CECRDIMYLR 128 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC-TTBGGGHHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc-cccccHHHHH
Confidence 888444445888888999999988888 5665554433
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=1.3e-10 Score=101.85 Aligned_cols=104 Identities=26% Similarity=0.317 Sum_probs=55.1
Q ss_pred cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCc
Q 039739 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNM 515 (628)
Q Consensus 436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 515 (628)
+.++++++.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|+++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--------------------- 67 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--------------------- 67 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC---------------------
Confidence 34444444443 2232221 44555555555555444445555555555555555544
Q ss_pred CcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 516 LHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 516 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
.++...|..+++|+.|++++|++++..+..|..+++|+.|++++|+++
T Consensus 68 ---~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 68 ---VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 233333555666666666666666555555666666666666666665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=9.6e-13 Score=130.99 Aligned_cols=168 Identities=19% Similarity=0.188 Sum_probs=100.1
Q ss_pred CCCCceEecccccccccccCCCcc-----ccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccc
Q 039739 55 FPSLKNLSMIGCEVNGLVRGQGFP-----HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILD 129 (628)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 129 (628)
.++|+.|++++|.++..... .+. ..++|++|+|++| .+.+.....+...+++|++|++++|.++..+.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLASC--QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECTTC--CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEecCC--CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 56777888877776543221 222 2257778888777 454444555554467778888887777442222222
Q ss_pred ccc-cCCCCCcEEEccCCccccc----CchhhhcCCCCCEEEccccccccc----cCCCCCCCCCcccEEEcccCeeeee
Q 039739 130 RGL-CSLVHLQVLNIAYNDLRGS----LPWCLANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELYLSNNHFQIP 200 (628)
Q Consensus 130 ~~l-~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----l~~~~l~~l~~L~~L~l~~~~~~~~ 200 (628)
..+ ...++|++|+|++|.+.+. ++..+..+++|++|++++|.+.+. +.. .+...++|++|++++|.++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence 223 2467788888887777542 334446677788888887776521 122 355566778888887776531
Q ss_pred c---CCCCcCCCCcccEEeccCCcccccc
Q 039739 201 I---SLEPFFNHSRLKSFYADNNEINAEI 226 (628)
Q Consensus 201 ~---~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (628)
. ....+...+.|++|++++|.+.+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 1 1122334567788888777776543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.8e-10 Score=101.39 Aligned_cols=104 Identities=26% Similarity=0.295 Sum_probs=57.6
Q ss_pred cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCc
Q 039739 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNM 515 (628)
Q Consensus 436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 515 (628)
+.++++++.+. .+|..+. ++|+.|++++|.+.+..|..|..+++|+.|++++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------- 71 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-------------------- 71 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--------------------
Confidence 34445544443 3333332 455555555555554445555555555555555555542
Q ss_pred CcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 516 LHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 516 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
++...+..+++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 72 ----i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 72 ----IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ----cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 33333555666666666666666554445666667777777777666
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=1e-08 Score=102.97 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=27.0
Q ss_pred cccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEcc
Q 039739 428 SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 489 (628)
Q Consensus 428 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 489 (628)
+|..|.+|+.+.+.++.+......+|.+|.+|+.+.+..+ +......+|.+|++|+.+.+.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 3444444444444444443333344444444554444432 222333445555555555443
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=1.5e-08 Score=101.68 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=58.3
Q ss_pred CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414 (628)
Q Consensus 335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 414 (628)
+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +. .++...|.+|.+|+.+.+.++.++.....+|.+|.+|+.+
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 444555554432 22222334555555555555432 22 4444455555666666655554544444555556666666
Q ss_pred EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCC
Q 039739 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT 457 (628)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 457 (628)
.+..+ ++.+...+|.+|.+|+.+.+..+ +......+|.++.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 65432 33233455666666666665443 3323344555543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=3.9e-09 Score=103.95 Aligned_cols=186 Identities=16% Similarity=0.223 Sum_probs=112.5
Q ss_pred CCCCEEeCCCCCCCC------ccchhhhcccCCCCcEEecCCCCCC---------CcchhHhhccCCCCceEeccccccc
Q 039739 5 PSLNTLYLSSNNFTD------IATATQELHNFTNLEYLTLDSSSLH---------ISLLQSIASIFPSLKNLSMIGCEVN 69 (628)
Q Consensus 5 ~~L~~L~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~l~~~~~~L~~L~l~~~~~~ 69 (628)
+.++.|.+......+ +..+.+++.++++|+.|.+.+.... +.....+.. +|+|+.|+++++...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~-~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA-MPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT-CTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhc-CCCCcEEEEeCCCCc
Confidence 456777777655431 1124555677899999998664321 123344455 899999999887321
Q ss_pred ccccCCCccccCccceeecccchhhcCcchhhhhhc-cCCCccEEeeccc--cC-CCCCCccccccc--cCCCCCcEEEc
Q 039739 70 GLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGE-SMPSLKYLSLFGS--IL-GTNSSRILDRGL--CSLVHLQVLNI 143 (628)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~--~~-~~~~~~~~~~~l--~~l~~L~~L~L 143 (628)
..+ .+ .+++|++|++..+ .+.......++. .+++|++|+|+.+ .. +...+......+ ..+++|++|++
T Consensus 186 -~l~--~~-~~~~L~~L~L~~~--~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 186 -SIG--KK-PRPNLKSLEIISG--GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp -BCC--SC-BCTTCSEEEEECS--BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred -eec--cc-cCCCCcEEEEecC--CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 122 23 3789999999888 455555555552 3899999988632 11 221111111122 24788888888
Q ss_pred cCCcccccCchhhh---cCCCCCEEEccccccccc----cCCCCCCCCCcccEEEcccCeee
Q 039739 144 AYNDLRGSLPWCLA---NMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELYLSNNHFQ 198 (628)
Q Consensus 144 ~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~----l~~~~l~~l~~L~~L~l~~~~~~ 198 (628)
.+|.+.+..+..+. .+++|++|+++.|.+.+. ++. .+..+++|+.|+++.|.++
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence 88877654333333 467788888887777532 233 3455677777777777654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=8.7e-09 Score=102.14 Aligned_cols=89 Identities=27% Similarity=0.324 Sum_probs=49.8
Q ss_pred ccCCCCcceEECCC-CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCc
Q 039739 453 LGNLTRLQHIMMPK-NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSL 531 (628)
Q Consensus 453 ~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 531 (628)
+..+++|++|+|++ |.+....+..|..+++|+.|++++|++. .+++.+|.++++|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~------------------------~~~~~~~~~l~~L 82 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------------------FVAPDAFHFTPRL 82 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC------------------------EECTTGGGSCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc------------------------eeCHHHhcCCcCC
Confidence 44445555555553 4444444444444455555544444443 2333336667777
Q ss_pred cEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 532 VTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 532 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
+.|+|++|++++.++..+..++ |+.|++.+|++.
T Consensus 83 ~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777777777755555555554 777777777766
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=8.2e-09 Score=102.35 Aligned_cols=103 Identities=22% Similarity=0.158 Sum_probs=69.2
Q ss_pred EEEccCC-ccCCcccccccCCCCCcEEEccC-ccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739 389 SLALSNN-SLEGHMFSRNFNLTNLRWLQLEG-NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466 (628)
Q Consensus 389 ~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 466 (628)
.++++++ .++. .+. +..+++|+.|++++ |.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 5654 333 66677777777775 777655556677777777777777777766666777777777777777
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739 467 NHLEGPIPVEFCQLDWLQILDISDNNIS 494 (628)
Q Consensus 467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 494 (628)
|.+....+..+..++ |+.|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777755555555544 777777777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=5.7e-09 Score=102.76 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=20.5
Q ss_pred CCCccEEECCCcccCCcc----chhhcCCCCCcEEECCCCcCCcc
Q 039739 528 SYSLVTLDLSYNRLNGNI----SDWVDGLSQLSHLILGHNNLEGE 568 (628)
Q Consensus 528 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~~ 568 (628)
+++|+.|+|+.|.+.+.. +..+..+++|+.|++++|.++..
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 455566666555554322 22223345566666665555533
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=5.3e-09 Score=92.85 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=72.9
Q ss_pred hhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcc---
Q 039739 23 ATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTS--- 98 (628)
Q Consensus 23 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--- 98 (628)
+...+..++.|++|+|++| .+.+.....++. .+...++|++|+|++| .+.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~----------------------~L~~~~~L~~L~Ls~n--~i~~~g~~ 83 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE----------------------ALKTNTYVKKFSIVGT--RSNDPVAF 83 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHH----------------------HHTTCCSCCEEECTTS--CCCHHHHH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH----------------------HHHhCCCcCEEECcCC--CCChHHHH
Confidence 4455666777777777777 776655555544 2333455555555555 23222
Q ss_pred -hhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEc--cCCccccc----CchhhhcCCCCCEEEccccc
Q 039739 99 -FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNI--AYNDLRGS----LPWCLANMTSLRILDVSSNQ 171 (628)
Q Consensus 99 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 171 (628)
+...+.. .++|++|++++|.++..++....+++...+.|++|++ ++|.+... +...+...++|++|++++|.
T Consensus 84 ~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 84 ALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHh-CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2233333 5667777777776655444444456666677777777 66666543 23344555677777777766
Q ss_pred cc
Q 039739 172 LT 173 (628)
Q Consensus 172 ~~ 173 (628)
+.
T Consensus 163 i~ 164 (185)
T 1io0_A 163 QG 164 (185)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=4.1e-09 Score=93.60 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCCCCCEEeCCCC-CCCC--ccchhhhcccCCCCcEEecCCCCCCCcchhHhhcc---CCCCceEecccccccccccCC
Q 039739 2 GSFPSLNTLYLSSN-NFTD--IATATQELHNFTNLEYLTLDSSSLHISLLQSIASI---FPSLKNLSMIGCEVNGLVRGQ 75 (628)
Q Consensus 2 ~~l~~L~~L~l~~~-~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~ 75 (628)
...+.|++|+|++| .+.. +..+...+...++|++|+|++|.+.+.....++.. .++|++|+|++|.+.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~-- 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI-- 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH--
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH--
Confidence 45789999999999 8854 33466778888999999999999987766666552 3455555555555443210
Q ss_pred CccccCccceeecccchhhcCcchhhhhhccCCCccEEee--ccccCCCCCCccccccccCCCCCcEEEccCCccc
Q 039739 76 GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSL--FGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR 149 (628)
Q Consensus 76 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 149 (628)
..+...+.. .++|++|++ ++|.++..+.....+.+...++|++|++++|.+.
T Consensus 111 ---------------------~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 ---------------------LALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp ---------------------HHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred ---------------------HHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 012233333 455666666 5555544333333345556667777777777664
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=2e-08 Score=86.34 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=65.2
Q ss_pred CCCCcEEecCCCCCCCcchhHhhccCCCCceEeccccc-ccccccCCCccc----cCccceeecccchhhcCcchhhhhh
Q 039739 30 FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCE-VNGLVRGQGFPH----FKSLEHLDMEGALIALNTSFLQIIG 104 (628)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~ 104 (628)
-.+|++|++++|.+++.....+.. |++|++|+|++|. +++.... .+.. +++|++|++++|. .+.+.....+.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~-~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCG-NVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCT-TCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCC-cCCHHHHHHHh
Confidence 456888999888888888888877 8899999998885 5543221 2333 3478899998885 46666677777
Q ss_pred ccCCCccEEeeccccC
Q 039739 105 ESMPSLKYLSLFGSIL 120 (628)
Q Consensus 105 ~~~~~L~~L~l~~~~~ 120 (628)
+ +++|++|++++|..
T Consensus 137 ~-~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 137 H-FRNLKYLFLSDLPG 151 (176)
T ss_dssp G-CTTCCEEEEESCTT
T ss_pred c-CCCCCEEECCCCCC
Confidence 7 89999999998864
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=2.1e-07 Score=80.04 Aligned_cols=86 Identities=7% Similarity=0.030 Sum_probs=51.7
Q ss_pred CCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhcc---CCCccEEeecccc-CCCCCCcccccc
Q 039739 56 PSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGES---MPSLKYLSLFGSI-LGTNSSRILDRG 131 (628)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~~~~~ 131 (628)
.+|++|++++|.++..... .+.++++|++|+|++|. .+.+.....++.. +++|++|++++|. +++ .-...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~-~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCH-YIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----KGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCT-TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH----HHHHH
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCC-ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH----HHHHH
Confidence 3577777777766544332 45667777777777774 3555555555541 2467777777765 344 11123
Q ss_pred ccCCCCCcEEEccCCc
Q 039739 132 LCSLVHLQVLNIAYND 147 (628)
Q Consensus 132 l~~l~~L~~L~L~~~~ 147 (628)
+..+++|++|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5567777777777775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=4e-06 Score=77.97 Aligned_cols=101 Identities=23% Similarity=0.227 Sum_probs=64.7
Q ss_pred EeCCCCCCCCccc-hhhhcccCCCCcEEecCCCCCCC--cchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739 10 LYLSSNNFTDIAT-ATQELHNFTNLEYLTLDSSSLHI--SLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL 86 (628)
Q Consensus 10 L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 86 (628)
++++.|....+.. +.....++++|++|+|++|.+++ ..+..+.. +++|+.|+|++|.+.+......+..+ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERELDKIKGL-KLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSGGGGGGGTTS-CCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCchhhhhcccC-CcceE
Confidence 5556664322222 12223568889999999998876 33455666 89999999999888754221123333 89999
Q ss_pred ecccchhhcCcch-------hhhhhccCCCccEEee
Q 039739 87 DMEGALIALNTSF-------LQIIGESMPSLKYLSL 115 (628)
Q Consensus 87 ~l~~~~~~~~~~~-------~~~~~~~~~~L~~L~l 115 (628)
++++|+ +.+.. ...+.. +++|+.|+-
T Consensus 226 ~L~~Np--l~~~~~~~~~y~~~il~~-~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNS--LCDTFRDQSTYISAIRER-FPKLLRLDG 258 (267)
T ss_dssp ECTTST--TGGGCSSHHHHHHHHHHH-CTTCCEESS
T ss_pred EccCCc--CccccCcchhHHHHHHHH-CcccCeECC
Confidence 999984 33322 234555 999999974
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=1.1e-05 Score=74.88 Aligned_cols=82 Identities=23% Similarity=0.209 Sum_probs=49.6
Q ss_pred cCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCC--CC
Q 039739 478 CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS--QL 555 (628)
Q Consensus 478 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L 555 (628)
..+++|+.|++++|++.+.. .++.. +..+++|+.|+|++|.+.+. ..+..++ +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~---------------------~l~~~-~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L 222 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD---------------------DMSSI-VQKAPNLKILNLSGNELKSE--RELDKIKGLKL 222 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG---------------------GGTTH-HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCC
T ss_pred hhCCCCCEEECCCCCCCCCc---------------------cchhH-HhhCCCCCEEECCCCccCCc--hhhhhcccCCc
Confidence 35666777777777665310 12222 45677777777777777654 2233333 77
Q ss_pred cEEECCCCcCCccCC-------ccccCCCCCcEEE
Q 039739 556 SHLILGHNNLEGEVP-------VQLCKLNQLQLLD 583 (628)
Q Consensus 556 ~~L~l~~~~i~~~~~-------~~l~~l~~L~~L~ 583 (628)
++|+|++|++.+..| ..+..+|+|+.||
T Consensus 223 ~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 223 EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 778888887775444 2356677777765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.78 E-value=5.2e-06 Score=72.76 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=67.4
Q ss_pred hhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcc---
Q 039739 23 ATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTS--- 98 (628)
Q Consensus 23 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--- 98 (628)
+...+.+.+.|++|+|+++ .+.+.....++.. +..-..|+.|+|++| .+.+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~a----------------------L~~N~~L~~L~L~~n--~igd~ga~ 88 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEA----------------------ACNSKHIEKFSLANT--AISDSEAR 88 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHH----------------------HTTCSCCCEEECTTS--CCBHHHHT
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHH----------------------HhhCCCcCEEEccCC--CCChHHHH
Confidence 5556666788999999885 8877666666552 222234444444444 22222
Q ss_pred -hhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCC---cccc----cCchhhhcCCCCCEEEcccc
Q 039739 99 -FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYN---DLRG----SLPWCLANMTSLRILDVSSN 170 (628)
Q Consensus 99 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~---~~~~----~~~~~l~~l~~L~~L~l~~~ 170 (628)
+.+.+.. -+.|++|+|++|.++..++....+++..-+.|++|+|+++ .+.. .+...+..-+.|+.|+++.+
T Consensus 89 alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 89 GLIELIET-SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp THHHHHHH-CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhc-CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2222223 4556666666665544444444445566666666666643 2222 12334455566777776655
Q ss_pred cc
Q 039739 171 QL 172 (628)
Q Consensus 171 ~~ 172 (628)
.+
T Consensus 168 ~~ 169 (197)
T 1pgv_A 168 SM 169 (197)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=2.1e-05 Score=68.99 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=73.6
Q ss_pred cCccceeecccc-hhhcC--cchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccccc----C
Q 039739 80 FKSLEHLDMEGA-LIALN--TSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGS----L 152 (628)
Q Consensus 80 l~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~ 152 (628)
-+.|++|+|+++ .+... ..+.+.+.. -..|++|+|++|.+++.++....+++...+.|++|+|++|.+.+. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 345555555542 22111 124455555 678889999888887666666667777888899999998888653 2
Q ss_pred chhhhcCCCCCEEEcccc---cccc----ccCCCCCCCCCcccEEEcccCeee
Q 039739 153 PWCLANMTSLRILDVSSN---QLTG----SISSSPLVHLTSIEELYLSNNHFQ 198 (628)
Q Consensus 153 ~~~l~~l~~L~~L~l~~~---~~~~----~l~~~~l~~l~~L~~L~l~~~~~~ 198 (628)
...+..-+.|++|+++++ .+.. .+.. .+..-+.|+.|+++.+...
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence 334555677888988754 3321 1222 3455678888888776543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.06 E-value=0.011 Score=48.13 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=38.7
Q ss_pred EEecCCCcCc-CCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739 508 QVHLSKNMLH-GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566 (628)
Q Consensus 508 ~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 566 (628)
.++.+++.++ ..+|.. + .++|+.|+|++|+++...+..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666663 245543 2 246788888888887666667777888888888888775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.024 Score=46.13 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=35.6
Q ss_pred EEEccCCcCc-CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccC
Q 039739 485 ILDISDNNIS-GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542 (628)
Q Consensus 485 ~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 542 (628)
.++.+++.++ ..+|.. .+.+++.|+|++|.++ .++...|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 5666666665 233322 2556777777777774 566666777777777777777553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.54 E-value=5.1 Score=30.27 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=15.1
Q ss_pred cccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEcc
Q 039739 452 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 489 (628)
Q Consensus 452 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 489 (628)
+|.+|.+|+.+.+..+ ++......|.+|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3444444444444432 222333344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.77 E-value=7.6 Score=29.32 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739 519 QLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563 (628)
Q Consensus 519 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 563 (628)
.+...+|.+|.+|+.+.+-.+ ++......|.+|.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 566667888888888887765 44455667778888888777654
Done!