Query 039741
Match_columns 506
No_of_seqs 154 out of 226
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 12:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06410 PB1_UP2 Uncharacterize 100.0 1.6E-40 3.5E-45 282.1 11.1 96 44-142 1-97 (97)
2 smart00666 PB1 PB1 domain. Pho 99.4 6.1E-12 1.3E-16 99.9 9.9 76 58-142 4-81 (81)
3 PF00564 PB1: PB1 domain; Int 99.0 1.1E-09 2.4E-14 86.9 8.8 76 60-143 6-83 (84)
4 cd05992 PB1 The PB1 domain is 98.9 6.6E-09 1.4E-13 82.0 9.6 75 59-142 4-81 (81)
5 cd06407 PB1_NLP A PB1 domain i 98.6 2.9E-07 6.2E-12 76.9 9.4 72 63-142 7-81 (82)
6 cd06408 PB1_NoxR The PB1 domai 98.2 8.8E-06 1.9E-10 69.5 8.8 75 64-142 10-86 (86)
7 cd06398 PB1_Joka2 The PB1 doma 98.0 7E-05 1.5E-09 64.0 9.7 75 60-142 5-87 (91)
8 cd06401 PB1_TFG The PB1 domain 97.9 3E-05 6.6E-10 65.9 7.3 54 64-120 8-67 (81)
9 cd06396 PB1_NBR1 The PB1 domai 97.9 7.2E-05 1.6E-09 63.4 9.2 70 64-142 8-79 (81)
10 cd06405 PB1_Mekk2_3 The PB1 do 97.7 0.00017 3.7E-09 61.2 8.0 70 64-142 8-77 (79)
11 cd06404 PB1_aPKC PB1 domain is 97.6 0.00047 1E-08 59.0 9.2 73 63-143 7-82 (83)
12 cd06397 PB1_UP1 Uncharacterize 97.4 0.0006 1.3E-08 58.4 6.9 57 64-123 8-66 (82)
13 cd06403 PB1_Par6 The PB1 domai 96.9 0.0064 1.4E-07 52.0 8.5 68 62-141 6-77 (80)
14 cd06402 PB1_p62 The PB1 domain 96.8 0.0077 1.7E-07 51.8 8.7 66 66-142 15-85 (87)
15 cd06406 PB1_P67 A PB1 domain i 96.4 0.013 2.7E-07 50.1 7.2 70 59-141 6-77 (80)
16 cd06409 PB1_MUG70 The MUG70 pr 96.2 0.033 7.2E-07 47.8 8.7 71 64-142 9-84 (86)
17 cd06399 PB1_P40 The PB1 domain 95.6 0.035 7.6E-07 48.6 6.2 61 64-127 12-76 (92)
18 KOG3598 Thyroid hormone recept 93.4 0.045 9.8E-07 65.3 2.4 16 182-197 2042-2057(2220)
19 cd06411 PB1_p51 The PB1 domain 92.7 0.4 8.7E-06 41.0 6.5 55 67-122 8-64 (78)
20 KOG4369 RTK signaling protein 91.1 1.2 2.7E-05 53.3 10.1 10 44-53 1620-1629(2131)
21 KOG0695 Serine/threonine prote 88.1 4.2 9E-05 44.0 10.5 86 37-146 12-100 (593)
22 PF11498 Activator_LAG-3: Tran 88.0 0.15 3.3E-06 54.0 0.0 10 282-291 377-386 (468)
23 cd06395 PB1_Map2k5 PB1 domain 82.2 2.9 6.4E-05 36.7 5.1 51 74-127 21-72 (91)
24 PF11498 Activator_LAG-3: Tran 76.7 0.8 1.7E-05 48.8 0.0 6 186-191 279-284 (468)
25 cd01803 Ubiquitin Ubiquitin. U 67.5 10 0.00022 29.4 4.2 39 60-98 5-45 (76)
26 PF06752 E_Pc_C: Enhancer of P 64.5 6.3 0.00014 39.7 3.2 7 411-417 192-198 (230)
27 KOG4369 RTK signaling protein 64.3 8.1 0.00018 46.9 4.4 8 162-169 1771-1778(2131)
28 cd01812 BAG1_N Ubiquitin-like 64.0 15 0.00032 28.3 4.5 39 60-99 5-45 (71)
29 cd00196 UBQ Ubiquitin-like pro 62.8 19 0.00041 24.0 4.4 39 61-99 3-43 (69)
30 cd01809 Scythe_N Ubiquitin-lik 61.7 17 0.00036 27.9 4.4 39 60-98 5-45 (72)
31 KOG0672 Halotolerance protein 60.8 18 0.00038 36.3 5.4 66 56-124 17-90 (218)
32 PF11976 Rad60-SLD: Ubiquitin- 59.5 14 0.0003 28.8 3.7 44 60-105 5-51 (72)
33 PF14560 Ubiquitin_2: Ubiquiti 59.2 13 0.00028 30.6 3.6 30 70-99 18-49 (87)
34 cd01794 DC_UbP_C dendritic cel 58.7 17 0.00037 29.3 4.2 34 59-92 2-35 (70)
35 KOG3648 Golgi apparatus protei 57.6 9.9 0.00021 43.8 3.5 13 241-253 61-73 (1179)
36 cd01806 Nedd8 Nebb8-like ubiq 57.4 26 0.00056 27.1 4.9 43 61-105 6-50 (76)
37 cd01805 RAD23_N Ubiquitin-like 57.3 23 0.0005 27.9 4.6 32 60-91 5-36 (77)
38 cd01807 GDX_N ubiquitin-like d 55.7 23 0.00051 28.1 4.5 40 60-99 5-46 (74)
39 smart00213 UBQ Ubiquitin homol 54.2 27 0.00058 25.7 4.3 37 61-98 6-44 (64)
40 PF03902 Gal4_dimer: Gal4-like 54.2 3.3 7.2E-05 33.9 -0.6 42 80-125 7-48 (57)
41 PTZ00044 ubiquitin; Provisiona 53.7 26 0.00055 27.6 4.4 40 60-99 5-46 (76)
42 PF15504 DUF4647: Domain of un 52.7 12 0.00027 40.6 3.1 43 242-285 283-326 (457)
43 KOG1883 Cofactor required for 52.6 7.4 0.00016 46.8 1.6 12 78-89 1206-1217(1517)
44 cd01796 DDI1_N DNA damage indu 49.1 28 0.00062 27.8 4.0 36 64-99 8-45 (71)
45 TIGR03649 ergot_EASG ergot alk 48.1 23 0.00051 33.5 3.9 62 65-129 189-252 (285)
46 TIGR02469 CbiT precorrin-6Y C5 45.1 1.1E+02 0.0023 24.9 6.8 64 65-128 42-112 (124)
47 cd01789 Alp11_N Ubiquitin-like 41.8 45 0.00099 27.7 4.3 29 70-98 17-47 (84)
48 PHA01732 proline-rich protein 41.7 69 0.0015 28.7 5.4 23 185-207 2-24 (94)
49 KOG3206 Alpha-tubulin folding 40.8 30 0.00065 35.1 3.5 44 72-116 19-62 (234)
50 KOG1883 Cofactor required for 40.3 20 0.00044 43.4 2.7 8 60-67 1152-1159(1517)
51 cd01810 ISG15_repeat2 ISG15 ub 39.4 53 0.0011 26.2 4.2 39 60-98 3-43 (74)
52 cd01769 UBL Ubiquitin-like dom 39.4 68 0.0015 23.8 4.5 38 61-98 3-42 (69)
53 cd01799 Hoil1_N Ubiquitin-like 39.4 43 0.00093 27.6 3.7 34 63-96 10-45 (75)
54 cd01804 midnolin_N Ubiquitin-l 37.6 77 0.0017 25.8 4.9 42 63-104 9-50 (78)
55 COG3064 TolA Membrane protein 37.5 54 0.0012 35.2 4.9 6 239-244 102-107 (387)
56 TIGR01645 half-pint poly-U bin 36.7 43 0.00093 37.9 4.3 7 205-211 17-23 (612)
57 cd01800 SF3a120_C Ubiquitin-li 36.7 55 0.0012 26.3 3.9 37 63-99 5-43 (76)
58 PRK00377 cbiT cobalt-precorrin 33.9 1.5E+02 0.0032 27.5 6.7 69 61-129 60-136 (198)
59 cd01798 parkin_N amino-termina 33.9 80 0.0017 24.7 4.3 40 60-99 3-44 (70)
60 COG5624 TAF61 Transcription in 32.1 47 0.001 36.6 3.6 9 115-123 36-44 (505)
61 cd06552 ASCH_yqfb_like ASC-1 h 30.6 2E+02 0.0043 23.9 6.4 27 64-91 44-70 (100)
62 PRK15244 virulence protein Spv 29.7 32 0.00069 38.9 1.9 26 376-405 346-371 (591)
63 PF09606 Med15: ARC105 or Med1 29.6 18 0.00038 42.1 0.0 10 80-89 2-11 (799)
64 PF07555 NAGidase: beta-N-acet 29.6 64 0.0014 33.4 3.9 45 81-129 57-102 (306)
65 COG5624 TAF61 Transcription in 29.5 59 0.0013 35.8 3.8 6 97-102 87-92 (505)
66 cd01802 AN1_N ubiquitin-like d 27.1 1.2E+02 0.0026 26.5 4.6 40 60-99 32-73 (103)
67 PF06752 E_Pc_C: Enhancer of P 27.0 97 0.0021 31.6 4.5 9 250-258 5-13 (230)
68 PTZ00186 heat shock 70 kDa pre 26.0 38 0.00083 38.0 1.8 11 113-123 321-331 (657)
69 PF14107 DUF4280: Domain of un 25.8 38 0.00083 29.0 1.4 16 38-53 87-102 (108)
70 cd04894 ACT_ACR-like_1 ACT dom 25.8 1E+02 0.0022 26.4 3.8 41 45-89 22-68 (69)
71 KOG2094 Predicted DNA damage i 25.7 2.4E+02 0.0052 31.2 7.4 89 43-144 329-440 (490)
72 PF09606 Med15: ARC105 or Med1 25.3 24 0.00051 41.1 0.0 8 329-336 350-357 (799)
73 PF00240 ubiquitin: Ubiquitin 23.8 1.4E+02 0.003 22.9 4.0 36 63-98 3-40 (69)
74 PRK10665 nitrogen regulatory p 23.6 3.3E+02 0.0071 24.3 6.8 76 68-146 3-98 (112)
75 PRK14463 ribosomal RNA large s 23.2 2E+02 0.0044 30.1 6.2 79 73-167 228-311 (349)
76 KOG4211 Splicing factor hnRNP- 22.5 2.7E+02 0.0058 31.4 7.2 121 60-191 3-129 (510)
77 KOG2133 Transcriptional corepr 22.0 50 0.0011 39.7 1.7 39 240-278 1154-1193(1229)
78 cd06194 FNR_N-term_Iron_sulfur 21.8 4.1E+02 0.0088 24.5 7.3 66 66-143 97-162 (222)
79 PRK10667 Hha toxicity attenuat 21.7 76 0.0017 29.6 2.5 37 74-125 44-80 (122)
80 PRK09510 tolA cell envelope in 21.4 2E+02 0.0044 31.1 5.9 9 232-240 53-61 (387)
81 PHA02909 hypothetical protein; 21.3 1E+02 0.0022 26.0 2.9 21 438-458 10-30 (72)
82 cd01792 ISG15_repeat1 ISG15 ub 21.2 2.2E+02 0.0047 23.1 4.9 32 61-92 8-39 (80)
83 PF00106 adh_short: short chai 21.1 2.6E+02 0.0057 23.8 5.6 63 65-145 24-89 (167)
84 PF14259 RRM_6: RNA recognitio 20.7 97 0.0021 23.3 2.6 51 71-125 5-60 (70)
85 PF12446 DUF3682: Protein of u 20.7 77 0.0017 29.9 2.3 13 204-216 73-85 (133)
86 PF04599 Pox_G5: Poxvirus G5 p 20.6 1E+02 0.0022 33.8 3.6 32 109-142 41-72 (425)
87 KOG3606 Cell polarity protein 20.5 1.4E+02 0.0029 31.9 4.3 69 66-146 28-100 (358)
88 COG0621 MiaB 2-methylthioadeni 20.2 2.6E+02 0.0057 30.6 6.5 67 64-146 264-338 (437)
No 1
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=100.00 E-value=1.6e-40 Score=282.06 Aligned_cols=96 Identities=63% Similarity=1.099 Sum_probs=91.4
Q ss_pred EeecCCEeecCCCCCCeeeecCceeEEEecCCCChHHHHHHHHhHhCCCc-eEEEEeCCCCCcCceeeccCchHHHHHHH
Q 039741 44 MCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDND-VSFKYQLPGEDLDALISVTNDDDLEHMMN 122 (506)
Q Consensus 44 mCSyGGrIlPRP~DGkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~d-vsLKYQLPgEDLDaLISVssDEDL~nMme 122 (506)
||||||||+||++||+|+|+|||||||+|+|++||.||++||+++|+... ++||||||+||||+||||+|||||+|||+
T Consensus 1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~ 80 (97)
T cd06410 1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMME 80 (97)
T ss_pred CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence 79999999999999999999999999999999999999999999997554 79999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCeEEEEEe
Q 039741 123 EYDRLYRASAKPARMRLFLF 142 (506)
Q Consensus 123 EYDRl~r~s~~p~RLRvFLF 142 (506)
||||+ +.+++|||||||
T Consensus 81 e~~~~---~~~~~rirvflf 97 (97)
T cd06410 81 EYDRL---SGGSARLRVFLF 97 (97)
T ss_pred hhccc---cCCCceEEEEEC
Confidence 99998 456789999998
No 2
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.35 E-value=6.1e-12 Score=99.89 Aligned_cols=76 Identities=45% Similarity=0.722 Sum_probs=66.1
Q ss_pred CCeeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCC
Q 039741 58 NQLAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPA 135 (506)
Q Consensus 58 GkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~ 135 (506)
.|++| ||++|++.|+++++|.+|++++++.|+.. .+.|||+ +||-| +|+++||+||..||+.+.+.. ..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~--Dedgd-~v~l~sd~Dl~~a~~~~~~~~-----~~ 74 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGD-LVSLTSDEDLEEAIEEYDSLG-----SK 74 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE--CCCCC-EEEecCHHHHHHHHHHHHHcC-----Cc
Confidence 46778 89999999999999999999999999754 7999999 77755 999999999999999996542 34
Q ss_pred eEEEEEe
Q 039741 136 RMRLFLF 142 (506)
Q Consensus 136 RLRvFLF 142 (506)
+||||||
T Consensus 75 ~l~l~v~ 81 (81)
T smart00666 75 KLRLHVF 81 (81)
T ss_pred eEEEEeC
Confidence 7999986
No 3
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.04 E-value=1.1e-09 Score=86.87 Aligned_cols=76 Identities=25% Similarity=0.493 Sum_probs=62.0
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCC--CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGD--NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARM 137 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~--~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RL 137 (506)
++|.|+..|++.++++++|.+|+.++++.|+. ..+.|+|. +|| +.+|+|++|+||..|++.+.+. +..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~--D~d-gD~V~i~sd~Dl~~a~~~~~~~-----~~~~l 77 (84)
T PF00564_consen 6 VRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK--DED-GDLVTISSDEDLQEAIEQAKES-----GSKTL 77 (84)
T ss_dssp EEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE--ETT-SSEEEESSHHHHHHHHHHHHHC-----TTSCE
T ss_pred EEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee--CCC-CCEEEeCCHHHHHHHHHHHHhc-----CCCcE
Confidence 44544444569999999999999999999986 67899997 555 4799999999999999999765 23489
Q ss_pred EEEEec
Q 039741 138 RLFLFP 143 (506)
Q Consensus 138 RvFLFp 143 (506)
|||+..
T Consensus 78 rl~v~~ 83 (84)
T PF00564_consen 78 RLFVQD 83 (84)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999863
No 4
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=98.94 E-value=6.6e-09 Score=81.97 Aligned_cols=75 Identities=33% Similarity=0.591 Sum_probs=59.7
Q ss_pred CeeeecCceeEEEec-CCCChHHHHHHHHhHhCCC--ceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCC
Q 039741 59 QLAYIGGETKILAAD-RAIKFASMISKLAALCGDN--DVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPA 135 (506)
Q Consensus 59 kLrYVGGETRIVsV~-RsiSF~eL~~KLs~l~g~~--dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~ 135 (506)
|++|- |++|.+.++ ++++|.+|+++|.+.|+.. .+.|||.- || ..+|++++|+||..|++.+.+. ...
T Consensus 4 K~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D--~e-~d~v~l~sd~Dl~~a~~~~~~~-----~~~ 74 (81)
T cd05992 4 KVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD--ED-GDLVTISSDEDLEEAIEEARRS-----GSK 74 (81)
T ss_pred EEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC--CC-CCEEEeCCHHHHHHHHHHHhhc-----CCc
Confidence 45555 567777777 9999999999999999765 67777764 54 3689999999999999999652 245
Q ss_pred eEEEEEe
Q 039741 136 RMRLFLF 142 (506)
Q Consensus 136 RLRvFLF 142 (506)
+||||++
T Consensus 75 ~l~l~v~ 81 (81)
T cd05992 75 KLRLFVF 81 (81)
T ss_pred cEEEEeC
Confidence 7999875
No 5
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=98.60 E-value=2.9e-07 Score=76.86 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=59.4
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCC---CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGD---NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRL 139 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~---~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRv 139 (506)
.|||++.+.++.+++|.+|+.++++.|+. ..|.|||. +|| .-.|+++||+||+.=++-|.. + +..++||
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~--Dde-gd~v~ltsd~DL~eai~i~~~----~-~~~~v~l 78 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL--DDD-EEWVLLTCDADLEECIDVYRS----S-GSHTIRL 78 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE--CCC-CCeEEeecHHHHHHHHHHHHH----C-CCCeEEE
Confidence 38899999999999999999999999964 46999997 444 679999999999876665533 2 4568999
Q ss_pred EEe
Q 039741 140 FLF 142 (506)
Q Consensus 140 FLF 142 (506)
|+-
T Consensus 79 ~v~ 81 (82)
T cd06407 79 LVH 81 (82)
T ss_pred Eee
Confidence 974
No 6
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=98.19 E-value=8.8e-06 Score=69.51 Aligned_cols=75 Identities=15% Similarity=0.319 Sum_probs=61.7
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCC-CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhc-CCCCCeEEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGD-NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRA-SAKPARMRLFL 141 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~-~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~-s~~p~RLRvFL 141 (506)
+||+|+|.|+.+|+|.+|..|+.+.|+. ..|+|||. +| ...|++++++||+--|.-.....|. .+.-+||-+|+
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKyk--DE--GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~~~e~w~ 85 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMK--DD--GDMITMGDQDDLDMAIDTARSEARKQGSDMGKLEIWV 85 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEE--cC--CCCccccCHHHHHHHHHHHHHHHHhhcccccceeeec
Confidence 7899999999999999999999999974 46999998 33 6799999999999999888765542 22347888876
Q ss_pred e
Q 039741 142 F 142 (506)
Q Consensus 142 F 142 (506)
+
T Consensus 86 ~ 86 (86)
T cd06408 86 M 86 (86)
T ss_pred C
Confidence 4
No 7
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=97.95 E-value=7e-05 Score=63.95 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=57.8
Q ss_pred eeeecCceeEEEecC-----CCChHHHHHHHHhHhCC---CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcC
Q 039741 60 LAYIGGETKILAADR-----AIKFASMISKLAALCGD---NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRAS 131 (506)
Q Consensus 60 LrYVGGETRIVsV~R-----siSF~eL~~KLs~l~g~---~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s 131 (506)
..| ||++|-++++. +++|.+|..|+++++.. ..+.|||. +|| ..+|.++||+||+.-|+...+ +
T Consensus 5 v~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~--Ded-gd~V~l~~D~DL~~a~~~~~~----~ 76 (91)
T cd06398 5 VKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT--DED-GDVVTLVDDNDLTDAIQYFCS----G 76 (91)
T ss_pred EEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCEEEEccHHHHHHHHHHHhc----c
Confidence 445 88899999995 79999999999999953 47999997 343 469999999999988865322 3
Q ss_pred CCCCeEEEEEe
Q 039741 132 AKPARMRLFLF 142 (506)
Q Consensus 132 ~~p~RLRvFLF 142 (506)
++..-|||++-
T Consensus 77 ~~~~~lrl~v~ 87 (91)
T cd06398 77 SRLNPLRIDVT 87 (91)
T ss_pred CCCceEEEEEE
Confidence 34456888874
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=97.94 E-value=3e-05 Score=65.87 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=45.7
Q ss_pred cCceeEEEecC-CCChHHHHHHHHhHhCC-----CceEEEEeCCCCCcCceeeccCchHHHHH
Q 039741 64 GGETKILAADR-AIKFASMISKLAALCGD-----NDVSFKYQLPGEDLDALISVTNDDDLEHM 120 (506)
Q Consensus 64 GGETRIVsV~R-siSF~eL~~KLs~l~g~-----~dvsLKYQLPgEDLDaLISVssDEDL~nM 120 (506)
|||.|.+.++. +++|.+|+..+..++.. .+|.|||.=+.. .||+|++++||.--
T Consensus 8 g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dG---DlVTIts~~dL~~A 67 (81)
T cd06401 8 GDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDG---DLITIFDSSDLSFA 67 (81)
T ss_pred CCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCC---CEEEeccHHHHHHH
Confidence 89999999997 58999999999988842 379999984433 59999999999755
No 9
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=97.92 E-value=7.2e-05 Score=63.39 Aligned_cols=70 Identities=19% Similarity=0.341 Sum_probs=56.4
Q ss_pred cCceeEEEecC--CCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 039741 64 GGETKILAADR--AIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFL 141 (506)
Q Consensus 64 GGETRIVsV~R--siSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFL 141 (506)
|||++.+.++. +++|.+|.+.+++.|+...|.|||- +|| .-.|+++||.||+.-++-| +.+ +..||+|+
T Consensus 8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYl--Dde-~e~v~lssd~eLeE~~rl~----~~~--~~~l~~~v 78 (81)
T cd06396 8 NGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYV--DEE-NEEVSVNSQGEYEEALKSA----VRQ--GNLLQMNV 78 (81)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEE--cCC-CCEEEEEchhhHHHHHHHH----HhC--CCEEEEEE
Confidence 68899999999 8899999999999998778999996 444 5689999999986555444 322 35899987
Q ss_pred e
Q 039741 142 F 142 (506)
Q Consensus 142 F 142 (506)
.
T Consensus 79 ~ 79 (81)
T cd06396 79 Y 79 (81)
T ss_pred e
Confidence 4
No 10
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=97.71 E-value=0.00017 Score=61.17 Aligned_cols=70 Identities=26% Similarity=0.508 Sum_probs=58.1
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEe
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF 142 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLF 142 (506)
-||.|||.++|.++|.||..|+.+.||.. +-+-|-.= .-||-+.|-|||++-||-.|+- ... .-||+.|.
T Consensus 8 ~gEKRIi~f~RPvkf~dl~~kv~~afGq~-mdl~ytn~----eL~iPl~~Q~DLDkAie~ld~s--~~~--ksLRilL~ 77 (79)
T cd06405 8 NGEKRIIQFPRPVKFKDLQQKVTTAFGQP-MDLHYTNN----ELLIPLKNQEDLDRAIELLDRS--PHM--KSLRILLS 77 (79)
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCe-eeEEEecc----cEEEeccCHHHHHHHHHHHccC--ccc--cceeEeEe
Confidence 48999999999999999999999999876 77777632 2799999999999999999872 222 34888775
No 11
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=97.60 E-value=0.00047 Score=59.03 Aligned_cols=73 Identities=19% Similarity=0.463 Sum_probs=57.2
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhC---CCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCG---DNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRL 139 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g---~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRv 139 (506)
-+|+-+|..++.+++|.+|..|+.++|. ...|++||- +|| .-+|+|++|++|+.-+.-|..- +..-|-+
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~--DEE-GDp~tiSS~~EL~EA~rl~~~n-----~~~~l~i 78 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI--DEE-GDPCTISSQMELEEAFRLYELN-----KDSELNI 78 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCceeecCHHHHHHHHHHHHhc-----CcccEEE
Confidence 4788899999999999999999999994 236999997 333 3489999999998777666322 2335777
Q ss_pred EEec
Q 039741 140 FLFP 143 (506)
Q Consensus 140 FLFp 143 (506)
-+||
T Consensus 79 hvfp 82 (83)
T cd06404 79 HVFP 82 (83)
T ss_pred EecC
Confidence 7776
No 12
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=97.37 E-value=0.0006 Score=58.36 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=47.7
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEeCCCCCcCceeeccCchHHHHHHHH
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQLPGEDLDALISVTNDDDLEHMMNE 123 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQLPgEDLDaLISVssDEDL~nMmeE 123 (506)
+|+||=+++++.-+|.+|.+||..+++.. ++.|+|- +|| .-+|++++|+||++-+..
T Consensus 8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi--DeD-~D~ITlssd~eL~d~~~~ 66 (82)
T cd06397 8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI--DND-NDEITLSSNKELQDFYRL 66 (82)
T ss_pred CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE--cCC-CCEEEecchHHHHHHHHh
Confidence 56788888999999999999999999754 6999996 443 369999999999877653
No 13
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=96.88 E-value=0.0064 Score=52.00 Aligned_cols=68 Identities=28% Similarity=0.437 Sum_probs=55.2
Q ss_pred eecCceeEEEecCC--CChHHHHHHHHhHh--CCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeE
Q 039741 62 YIGGETKILAADRA--IKFASMISKLAALC--GDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARM 137 (506)
Q Consensus 62 YVGGETRIVsV~Rs--iSF~eL~~KLs~l~--g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RL 137 (506)
+-++|+|=.+++|+ .+|.||.+.|..+. +.-++.|+|-=|..| |+.|+|||.+..-+. ++ ..-|
T Consensus 6 kfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gD---LLPInNDdNf~kAls--------sa-~plL 73 (80)
T cd06403 6 KFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGD---LLPINNDDNFLKALS--------SA-NPLL 73 (80)
T ss_pred ccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCC---EecccCcHHHHHHHH--------cC-CCce
Confidence 56889999999998 89999999999987 334799999988655 899999998765542 22 3478
Q ss_pred EEEE
Q 039741 138 RLFL 141 (506)
Q Consensus 138 RvFL 141 (506)
|||+
T Consensus 74 Rl~i 77 (80)
T cd06403 74 RIFI 77 (80)
T ss_pred EEEE
Confidence 9987
No 14
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.84 E-value=0.0077 Score=51.76 Aligned_cols=66 Identities=15% Similarity=0.359 Sum_probs=50.2
Q ss_pred ceeEEEecCC--CChHHHHHHHHhHhC---CCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEE
Q 039741 66 ETKILAADRA--IKFASMISKLAALCG---DNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLF 140 (506)
Q Consensus 66 ETRIVsV~Rs--iSF~eL~~KLs~l~g---~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvF 140 (506)
|-|.+++++. ++|.+|+.++.++|. ...|+|||.=.. .-||+|+|||||.--+...+ -.-||||
T Consensus 15 EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~Dee---GDlvtIssdeEL~~A~~~~~--------~~~~Rly 83 (87)
T cd06402 15 EIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEE---GDLVAFSSDEELVMALGSLN--------DDTFRIY 83 (87)
T ss_pred ceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCC---CCEEeecCHHHHHHHHHcCC--------CCcEEEE
Confidence 6688888555 589999999999993 347999998333 34999999999987765432 2469999
Q ss_pred Ee
Q 039741 141 LF 142 (506)
Q Consensus 141 LF 142 (506)
+-
T Consensus 84 I~ 85 (87)
T cd06402 84 IK 85 (87)
T ss_pred EE
Confidence 74
No 15
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.43 E-value=0.013 Score=50.05 Aligned_cols=70 Identities=13% Similarity=0.306 Sum_probs=52.8
Q ss_pred CeeeecCceeEEEecCCCChHHHHHHHHhHhCC--CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCe
Q 039741 59 QLAYIGGETKILAADRAIKFASMISKLAALCGD--NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPAR 136 (506)
Q Consensus 59 kLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~--~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~R 136 (506)
|++|-+ |-+|.|+++++|++|..||++-+.. ..+.|.|.-.. =..++.+ +|+||+.++.-- +-.+
T Consensus 6 KV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~--s~~~v~l-~d~dle~aws~~--------~~~~ 72 (80)
T cd06406 6 KVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA--SGEDVIL-SDTNMEDVWSQA--------KDGC 72 (80)
T ss_pred EEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC--CCCccCc-ChHHHHHHHHhh--------cCCe
Confidence 466776 9999999999999999999998853 45788887433 3456777 899999888432 2357
Q ss_pred EEEEE
Q 039741 137 MRLFL 141 (506)
Q Consensus 137 LRvFL 141 (506)
|.|+.
T Consensus 73 lTLwC 77 (80)
T cd06406 73 LTLWC 77 (80)
T ss_pred EEEEE
Confidence 77763
No 16
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.22 E-value=0.033 Score=47.83 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=54.2
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC-----ceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN-----DVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMR 138 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~-----dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLR 138 (506)
.|.++=+.+..+.+|.+|++.+++-+|.. .+.|||- .|-.-.|++|||.||..-++-+... ..-++|
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl---DDEgD~VllT~D~DL~e~v~iar~~-----g~~~v~ 80 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV---DDEGDIVLITSDSDLVAAVLVARSA-----GLKKLD 80 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE---cCCCCEEEEeccchHHHHHHHHHHc-----CCCEEE
Confidence 57788888888999999999999998643 4678884 2224699999999998888776443 234799
Q ss_pred EEEe
Q 039741 139 LFLF 142 (506)
Q Consensus 139 vFLF 142 (506)
|||-
T Consensus 81 L~v~ 84 (86)
T cd06409 81 LHLH 84 (86)
T ss_pred EEEe
Confidence 9874
No 17
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=95.59 E-value=0.035 Score=48.63 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=52.4
Q ss_pred cCceeEEEecCCC----ChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHh
Q 039741 64 GGETKILAADRAI----KFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 64 GGETRIVsV~Rsi----SF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl 127 (506)
|-+||=|+|..++ +|.+|...+...|...++.|.|+=+..| ||-+-+|||+.-|++|-..+
T Consensus 12 ~~~~rdi~vee~l~~~P~~kdLl~lmr~~f~~~dIaLNYrD~EGD---LIRllddeDv~LMV~~~r~~ 76 (92)
T cd06399 12 ISTIRDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LIRLLSDEDVALMVRQSRGL 76 (92)
T ss_pred CccccceEeecccccCccHHHHHHHHHHHhchhheeeeeecCCCC---EEEEcchhhHHHHHHHHhcC
Confidence 4568888888887 7899999999999888999999966665 89999999999999987544
No 18
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=93.39 E-value=0.045 Score=65.34 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=7.3
Q ss_pred CCcccccccCCCCCCC
Q 039741 182 NVDFLFGLEKGVPIPP 197 (506)
Q Consensus 182 n~D~Lfgld~~~~pPp 197 (506)
+..++-++-....+||
T Consensus 2042 ~m~~~~q~~s~q~~~~ 2057 (2220)
T KOG3598|consen 2042 NMGGMNQSMSHQAPPP 2057 (2220)
T ss_pred chhhhhccccCCCCCC
Confidence 3445544444444443
No 19
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=92.73 E-value=0.4 Score=40.99 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=46.7
Q ss_pred eeEEEecCCCChHHHHHHHHhHhC--CCceEEEEeCCCCCcCceeeccCchHHHHHHH
Q 039741 67 TKILAADRAIKFASMISKLAALCG--DNDVSFKYQLPGEDLDALISVTNDDDLEHMMN 122 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g--~~dvsLKYQLPgEDLDaLISVssDEDL~nMme 122 (506)
|-.|.|+|..++++|+.+|++.+. .....|-|.-|+++ ..||-++.+||++.++.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~-~~~v~l~~e~~me~aW~ 64 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED-GHWVPISGEESLQRAWQ 64 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC-ccEeecCcchHHHHHHH
Confidence 778999999999999999999884 23479999988874 37899999999998873
No 20
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=91.11 E-value=1.2 Score=53.26 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=6.7
Q ss_pred EeecCCEeec
Q 039741 44 MCSYGGKIHP 53 (506)
Q Consensus 44 mCSyGGrIlP 53 (506)
+..|+|.|.|
T Consensus 1620 is~~q~tiq~ 1629 (2131)
T KOG4369|consen 1620 ISMYQGTIQP 1629 (2131)
T ss_pred ccccCCcccc
Confidence 5567777765
No 21
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.12 E-value=4.2 Score=44.00 Aligned_cols=86 Identities=22% Similarity=0.482 Sum_probs=63.3
Q ss_pred CCCeEEEEeecCCEeecCCCCCCeeeecCceeEEEecCCCChHHHHHHHHhHh---CCCceEEEEeCCCCCcCceeeccC
Q 039741 37 QAYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALC---GDNDVSFKYQLPGEDLDALISVTN 113 (506)
Q Consensus 37 ~~~KVKlmCSyGGrIlPRP~DGkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~---g~~dvsLKYQLPgEDLDaLISVss 113 (506)
...+|||--.|+|.| -|..++..++|.+|...+..+| ...++++|+- +|| ..-|+|++
T Consensus 12 ~~~~vrlka~y~g~i----------------~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwi--dee-gdp~tv~s 72 (593)
T KOG0695|consen 12 SGGRVRLKAHYGGDI----------------FITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWI--DEE-GDPCTVSS 72 (593)
T ss_pred CCccEEEEEeecCcE----------------EEEeccCcccHHHHHHHHHHHHHHhhcCCceeEee--cCC-CCcceech
Confidence 356788877666655 4888999999999999999999 3456899985 555 34688888
Q ss_pred chHHHHHHHHHHHhhhcCCCCCeEEEEEecCCC
Q 039741 114 DDDLEHMMNEYDRLYRASAKPARMRLFLFPAGT 146 (506)
Q Consensus 114 DEDL~nMmeEYDRl~r~s~~p~RLRvFLFp~~~ 146 (506)
.-+|+.-+ |+.+. .+-+-|-+-+||..+
T Consensus 73 qmeleea~----r~~~~-~~d~el~ihvf~~~p 100 (593)
T KOG0695|consen 73 QMELEEAF----RLARQ-CRDEELIIHVFPSTP 100 (593)
T ss_pred hhhHHHHH----HHHHh-ccccceEEEEccCCC
Confidence 77765444 44432 234578899998876
No 22
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=87.99 E-value=0.15 Score=53.98 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=0.0
Q ss_pred cCCCCCCCCc
Q 039741 282 KSDDNLTGGV 291 (506)
Q Consensus 282 ~~~~~~~~g~ 291 (506)
+....++||+
T Consensus 377 qQq~qmngg~ 386 (468)
T PF11498_consen 377 QQQHQMNGGF 386 (468)
T ss_dssp ----------
T ss_pred hhhhhcccch
Confidence 3344555554
No 23
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=82.21 E-value=2.9 Score=36.73 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHhHhC-CCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHh
Q 039741 74 RAIKFASMISKLAALCG-DNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 74 RsiSF~eL~~KLs~l~g-~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl 127 (506)
..++|.++...++..+- .....|.|. +||- -=|+|.+||.|+.||.-|-.+
T Consensus 21 ~~L~F~DvL~~I~~vlp~aT~tAFeYE--DE~g-DRITVRSDeEm~AMlsyy~~~ 72 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEATTTAFEYE--DEDG-DRITVRSDEEMKAMLSYYCST 72 (91)
T ss_pred ccccHHHHHHHHHHhcccccccceeec--cccC-CeeEecchHHHHHHHHHHHHH
Confidence 55899999999999883 233567774 5553 469999999999999987554
No 24
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=76.70 E-value=0.8 Score=48.82 Aligned_cols=6 Identities=33% Similarity=0.196 Sum_probs=0.0
Q ss_pred cccccC
Q 039741 186 LFGLEK 191 (506)
Q Consensus 186 Lfgld~ 191 (506)
|-.||-
T Consensus 279 L~eLd~ 284 (468)
T PF11498_consen 279 LNELDF 284 (468)
T ss_dssp ------
T ss_pred Hhhhhh
Confidence 333443
No 25
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=67.49 E-value=10 Score=29.44 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=31.9
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++..+|++..|.|+.+.+..+|+.++++.+|.. ...|.|
T Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 455678899999999999999999999998754 456665
No 26
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=64.47 E-value=6.3 Score=39.71 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=3.9
Q ss_pred CCCCCCC
Q 039741 411 PMSAPPP 417 (506)
Q Consensus 411 ~~~~~~~ 417 (506)
++.|+++
T Consensus 192 qvpKV~~ 198 (230)
T PF06752_consen 192 QVPKVTP 198 (230)
T ss_pred cCCcCCC
Confidence 5666654
No 27
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=64.26 E-value=8.1 Score=46.90 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=5.2
Q ss_pred hhhhccCC
Q 039741 162 FVDALNSG 169 (506)
Q Consensus 162 fVdAlNg~ 169 (506)
|+--||-.
T Consensus 1771 ~~sql~i~ 1778 (2131)
T KOG4369|consen 1771 FISQLLIN 1778 (2131)
T ss_pred hhhhheee
Confidence 77766654
No 28
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=63.98 E-value=15 Score=28.32 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=31.7
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
+++. |+++-|.|+.+.+..+|+.+|++.+|.. ...|.|.
T Consensus 5 vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 5 VKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred EEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 4664 8888899999999999999999998744 3566665
No 29
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=62.84 E-value=19 Score=23.99 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=30.5
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCC--CceEEEEe
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGD--NDVSFKYQ 99 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~--~dvsLKYQ 99 (506)
++-+|.+..+.+..+.++.+|++++.+.+|. ..+.|-+.
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN 43 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC
Confidence 4448899999999999999999999998752 23555544
No 30
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=61.70 E-value=17 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=31.9
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++...|++..+.|+.+.+..+|++++++.+|.. ...|-|
T Consensus 5 vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 5 VKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 355678899999999999999999999998643 456666
No 31
>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning]
Probab=60.77 E-value=18 Score=36.25 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=49.6
Q ss_pred CCCCeeeecCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeC--------CCCCcCceeeccCchHHHHHHHHH
Q 039741 56 HDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQL--------PGEDLDALISVTNDDDLEHMMNEY 124 (506)
Q Consensus 56 ~DGkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQL--------PgEDLDaLISVssDEDL~nMmeEY 124 (506)
.|||++-.=|-|-=|++ |++..|++||.+++|...++|+--| =.++|+..|.+-+|+|.+.|+.+-
T Consensus 17 ~d~K~hvL~gaTGSvA~---iK~~~li~kL~ei~G~dki~iqvvvT~~a~~f~~~~~l~~~v~~~~d~DeW~~W~~r 90 (218)
T KOG0672|consen 17 DDGKFHVLLGATGSVAV---IKLPLLIKKLEEIYGRDKISIQVVVTKSATHFLEKLKLNKHVQLYTDEDEWKMWKSR 90 (218)
T ss_pred CCCceeEEEEeccccce---eehHHHHHHHHHhcCCcceeEEEEEechHHHHHhhcccccceeeecChHHhhhhhhc
Confidence 35555544444444443 6899999999999997767776644 357889999999999999998763
No 32
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=59.46 E-value=14 Score=28.80 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=34.1
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC---ceEEEEeCCCCCc
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN---DVSFKYQLPGEDL 105 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~---dvsLKYQLPgEDL 105 (506)
|+-.+|+..-+.|.++.+|..|+.+.++..|.. ++.|.| =|+.|
T Consensus 5 v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f--dG~~L 51 (72)
T PF11976_consen 5 VRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF--DGKRL 51 (72)
T ss_dssp EEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE--TTEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE--CCEEc
Confidence 566678888899999999999999999998644 355555 35544
No 33
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=59.20 E-value=13 Score=30.61 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=25.3
Q ss_pred EEecCCCChHHHHHHHHhHhCC--CceEEEEe
Q 039741 70 LAADRAIKFASMISKLAALCGD--NDVSFKYQ 99 (506)
Q Consensus 70 VsV~RsiSF~eL~~KLs~l~g~--~dvsLKYQ 99 (506)
+.+++++++.+|+.||..++|. ..+.|.|.
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 6889999999999999999974 45777664
No 34
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=58.74 E-value=17 Score=29.32 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=30.2
Q ss_pred CeeeecCceeEEEecCCCChHHHHHHHHhHhCCC
Q 039741 59 QLAYIGGETKILAADRAIKFASMISKLAALCGDN 92 (506)
Q Consensus 59 kLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~ 92 (506)
+++..+|++..|.|+.+.+..+|++++++..|..
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~ 35 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD 35 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC
Confidence 4677899999999999999999999999987643
No 35
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.60 E-value=9.9 Score=43.76 Aligned_cols=13 Identities=38% Similarity=0.355 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 039741 241 RQLQRLQIREQQQ 253 (506)
Q Consensus 241 rQLQRLQIaeqeq 253 (506)
+||-+|-...|.|
T Consensus 61 ~~~~~~~~~~~~~ 73 (1179)
T KOG3648|consen 61 QQLPQLLQSSQLQ 73 (1179)
T ss_pred hhhHHHHHHHHHH
Confidence 3554444344333
No 36
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=57.42 E-value=26 Score=27.14 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=32.3
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEeCCCCCc
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQLPGEDL 105 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQLPgEDL 105 (506)
+-.+|++..+.|+.+.+..+|+.+|++.+|.. ...|-|. +..|
T Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~--g~~L 50 (76)
T cd01806 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQM 50 (76)
T ss_pred EeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC--CeEc
Confidence 34568888899999999999999999988643 3455553 5544
No 37
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=57.32 E-value=23 Score=27.87 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=28.7
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCC
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGD 91 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~ 91 (506)
++..+|++..|.|+.+.+..+|++++++..|.
T Consensus 5 vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 5 FKTLKQQTFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 56778999999999999999999999998764
No 38
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=55.75 E-value=23 Score=28.09 Aligned_cols=40 Identities=5% Similarity=0.090 Sum_probs=32.1
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
.|..+|++..|.|+.+.+..+|++++++..|.. +..|-|.
T Consensus 5 vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 5 VKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 467789999999999999999999999987643 3455444
No 39
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=54.22 E-value=27 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=28.3
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCCc--eEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDND--VSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~d--vsLKY 98 (506)
+..+ .+.-+.|+.+.+..+|+.+|++.+|... ..|.|
T Consensus 6 k~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~ 44 (64)
T smart00213 6 KTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY 44 (64)
T ss_pred EECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 4445 4778999999999999999999987543 44444
No 40
>PF03902 Gal4_dimer: Gal4-like dimerisation domain; InterPro: IPR005600 The DNA binding domain (residues 1 to 147) of the yeast transcriptional activator GAL4 exists in solution in dimeric form, with the region responsible for dimerisation somewhere between residues 74 and 147. Experimental studies confirmed that the 'hydrophobic region' of the protein (residues 54-97, which contains a larger proportion of alpha-helix), is essential for dimerisation []. ; PDB: 1HBW_B 1D66_A 3COQ_A.
Probab=54.20 E-value=3.3 Score=33.93 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=31.1
Q ss_pred HHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHH
Q 039741 80 SMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYD 125 (506)
Q Consensus 80 eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYD 125 (506)
+.-.||.++= -.|++-||++|+|.|+--.++.+|..|.+.+.
T Consensus 7 eVE~Rl~~lE----~ll~~lfP~~did~lL~~~~~~~l~~il~~l~ 48 (57)
T PF03902_consen 7 EVENRLEKLE----QLLRELFPGEDIDDLLNDRDASDLKPILKKLF 48 (57)
T ss_dssp HHHHHHHHHH----HHHCCCSSSSHHHHHHHHHSCHHHHHHHHHH-
T ss_pred HHHHHHHHHH----HHHHHHCCCcCHHHHHHcccHHHHHHHHHHhc
Confidence 4445555552 24667789999999999999999999987553
No 41
>PTZ00044 ubiquitin; Provisional
Probab=53.72 E-value=26 Score=27.61 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=32.1
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
+|-..|.+..+.|+.+.+..+|+++|++..|.+ ...|-|.
T Consensus 5 vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 5 IKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 345689999999999999999999999998743 3455553
No 42
>PF15504 DUF4647: Domain of unknown function (DUF4647)
Probab=52.69 E-value=12 Score=40.57 Aligned_cols=43 Identities=40% Similarity=0.371 Sum_probs=21.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhccchhhhhhhcccCCC
Q 039741 242 QLQRLQIR-EQQQQHHQQQQQQQQQQQHHEQPHMQEAIYFRKSDD 285 (506)
Q Consensus 242 QLQRLQIa-eqeqq~~qq~qqq~q~q~~~~q~~~~~~~~~~~~~~ 285 (506)
-|.+|+-. ++|..++ |||.||+||+......+|++.-+.|++-
T Consensus 283 hlkKL~~nLk~eg~rk-qqq~qQ~qqq~KTp~kkQEaKkKaKsd~ 326 (457)
T PF15504_consen 283 HLKKLHYNLKTEGHRK-QQQWQQQQQQVKTPTKKQEAKKKAKSDP 326 (457)
T ss_pred HHHHHHhhhhhhhHHH-HHHHhhhcchhcCCchhHHHHHhhhcCc
Confidence 45566633 3343333 3333333333555566666666666663
No 43
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=52.59 E-value=7.4 Score=46.83 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=6.8
Q ss_pred hHHHHHHHHhHh
Q 039741 78 FASMISKLAALC 89 (506)
Q Consensus 78 F~eL~~KLs~l~ 89 (506)
|..|..+|-+++
T Consensus 1206 ~~~l~d~lv~vi 1217 (1517)
T KOG1883|consen 1206 WNALHDRLVAVI 1217 (1517)
T ss_pred HHHHHHHHHHHH
Confidence 555566665554
No 44
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=49.05 E-value=28 Score=27.79 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=30.3
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
+|++..|.|+.+.+..+|+.++++..|.. +..|-|.
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 89999999999999999999999998743 3455554
No 45
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=48.06 E-value=23 Score=33.51 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=44.7
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCCceEEEE-eCCCCCc-CceeeccCchHHHHHHHHHHHhhh
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDNDVSFKY-QLPGEDL-DALISVTNDDDLEHMMNEYDRLYR 129 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKY-QLPgEDL-DaLISVssDEDL~nMmeEYDRl~r 129 (506)
|.+.+|.-++.+|+.|+...|++.+|.. ++| .+|.|++ +.|..---.+|+.+|+.++.+..+
T Consensus 189 ~~~~~l~g~~~~s~~eia~~l~~~~g~~---v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 252 (285)
T TIGR03649 189 NTDYVVLGPELLTYDDVAEILSRVLGRK---ITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVK 252 (285)
T ss_pred CCeEEeeCCccCCHHHHHHHHHHHhCCc---eEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4456677778999999999999999864 344 4566554 345555567888888888876543
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=45.06 E-value=1.1e+02 Score=24.87 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=43.1
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCCceEEE-----EeCC--CCCcCceeeccCchHHHHHHHHHHHhh
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDNDVSFK-----YQLP--GEDLDALISVTNDDDLEHMMNEYDRLY 128 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLK-----YQLP--gEDLDaLISVssDEDL~nMmeEYDRl~ 128 (506)
++.+++.|+.+...-+...+..+.++...+.+. +.++ .+..|.+++..+.+++..++++.-++.
T Consensus 42 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~L 112 (124)
T TIGR02469 42 PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRL 112 (124)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHc
Confidence 348999999998888877776665543333332 1132 245899888777888887887766554
No 47
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=41.78 E-value=45 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=23.3
Q ss_pred EEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 70 LAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 70 VsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
..++.+++..+|+.||..++|.. .+.|-|
T Consensus 17 kr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l 47 (84)
T cd01789 17 KKYSRGLTIAELKKKLELVVGTPASSMRLQL 47 (84)
T ss_pred EecCCCCcHHHHHHHHHHHHCCCccceEEEE
Confidence 55899999999999999999743 456643
No 48
>PHA01732 proline-rich protein
Probab=41.68 E-value=69 Score=28.70 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=12.2
Q ss_pred ccccccCCCCCCCCCCCCCCCCC
Q 039741 185 FLFGLEKGVPIPPQKIPESVAVP 207 (506)
Q Consensus 185 ~Lfgld~~~~pPp~~~~~~v~v~ 207 (506)
|+||-.+--.+|++++++.++.+
T Consensus 2 C~fgAP~~p~ppPpPpP~P~PpP 24 (94)
T PHA01732 2 CIFRAPKPPEPPAPLPPAPVPPP 24 (94)
T ss_pred cccCCCCCCCCCCCCCCCCCCCC
Confidence 57886665444544444444333
No 49
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=30 Score=35.06 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=38.4
Q ss_pred ecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchH
Q 039741 72 ADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDD 116 (506)
Q Consensus 72 V~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDED 116 (506)
.++++++.+|+.||-.+||...=+.+-+|=+.| |.++++-+|||
T Consensus 19 ~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~-d~~~~~lsn~d 62 (234)
T KOG3206|consen 19 LSNSLTLAQFKDKLELLTGTEAESMELELYDGD-DKKVSALSNED 62 (234)
T ss_pred cCCcCcHHHHHhhhhhhhCCCccceEEEEEcCC-CceeeeccCCc
Confidence 578999999999999999876667888887777 99999998887
No 50
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=40.32 E-value=20 Score=43.40 Aligned_cols=8 Identities=25% Similarity=-0.118 Sum_probs=2.9
Q ss_pred eeeecCce
Q 039741 60 LAYIGGET 67 (506)
Q Consensus 60 LrYVGGET 67 (506)
|+---||+
T Consensus 1152 l~~~cvel 1159 (1517)
T KOG1883|consen 1152 LYVTCVEL 1159 (1517)
T ss_pred cccchhhh
Confidence 33333333
No 51
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=39.40 E-value=53 Score=26.16 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=31.3
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|...|++..|.|+.+.+..+|++++++..|.. ...|-|
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~ 43 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF 43 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 456789999999999999999999999987643 344544
No 52
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=39.38 E-value=68 Score=23.83 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=29.3
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+...|.+..+.++.+.+..+|+.++++.+|.. .+.|.|
T Consensus 3 ~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 3 KTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred EccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 34467777889999999999999999998643 355544
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=39.37 E-value=43 Score=27.59 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=28.8
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDN--DVSF 96 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsL 96 (506)
.+|.|..|.|+.+.+..+|+.||.+.+|.. ...|
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL 45 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW 45 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 368899999999999999999999998743 3566
No 54
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=37.60 E-value=77 Score=25.84 Aligned_cols=42 Identities=5% Similarity=-0.063 Sum_probs=30.4
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCC
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGED 104 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgED 104 (506)
..|.+..|.|+.+.+..+|+.++++..+.....+|.-..+.-
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~ 50 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETR 50 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcC
Confidence 347778899999999999999999987644333444334553
No 55
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=37.52 E-value=54 Score=35.16 Aligned_cols=6 Identities=33% Similarity=0.396 Sum_probs=2.4
Q ss_pred HHHHHH
Q 039741 239 IQRQLQ 244 (506)
Q Consensus 239 iQrQLQ 244 (506)
+-+||.
T Consensus 102 rlkQle 107 (387)
T COG3064 102 RLKQLE 107 (387)
T ss_pred HHHHHH
Confidence 333443
No 56
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=36.73 E-value=43 Score=37.88 Aligned_cols=7 Identities=43% Similarity=0.629 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 039741 205 AVPPPPP 211 (506)
Q Consensus 205 ~v~~p~~ 211 (506)
.++-|+.
T Consensus 17 ~~~~~~~ 23 (612)
T TIGR01645 17 SVPMPVL 23 (612)
T ss_pred ccccccC
Confidence 3333333
No 57
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=36.69 E-value=55 Score=26.34 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=30.5
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
.+|++..|.|+.+.+..+|+.+|.+..|.. ...|.|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 478999999999999999999999988743 3556554
No 58
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=33.93 E-value=1.5e+02 Score=27.48 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=46.3
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhC-CCceEEEE-----eCC--CCCcCceeeccCchHHHHHHHHHHHhhh
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCG-DNDVSFKY-----QLP--GEDLDALISVTNDDDLEHMMNEYDRLYR 129 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g-~~dvsLKY-----QLP--gEDLDaLISVssDEDL~nMmeEYDRl~r 129 (506)
+..|...+|+.|+.+-..-++.++-.+.++ ...+.+.. .|+ .+..|.+|+-...+++..++++..++.+
T Consensus 60 ~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~Lk 136 (198)
T PRK00377 60 LLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIK 136 (198)
T ss_pred HHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcC
Confidence 345666799999999988887776666555 23333321 122 2457888876677889999998776643
No 59
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=33.91 E-value=80 Score=24.74 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=31.9
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
.+-.+|++..|.|+.+.+..+|++++++..|.. +..|-|.
T Consensus 3 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 3 VRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred EEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 355689999999999999999999999987633 3455444
No 60
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.13 E-value=47 Score=36.59 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 039741 115 DDLEHMMNE 123 (506)
Q Consensus 115 EDL~nMmeE 123 (506)
+.|..||+.
T Consensus 36 ~ql~~l~h~ 44 (505)
T COG5624 36 EQLMKLMHF 44 (505)
T ss_pred HHHHHHHHH
Confidence 334444433
No 61
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=30.56 E-value=2e+02 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.4
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCC
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGD 91 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~ 91 (506)
-|..+|.+|.+ ++|.+|-...+..+|.
T Consensus 44 ~~~~~v~~V~~-~~~~~l~~~~A~~eG~ 70 (100)
T cd06552 44 FGEAEITSVEE-KTLGELTDEDARQEGF 70 (100)
T ss_pred EEEEEEEEEEE-EEhhhCCHHHHHhcCC
Confidence 46788999977 8999998888888764
No 62
>PRK15244 virulence protein SpvB; Provisional
Probab=29.71 E-value=32 Score=38.91 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.7
Q ss_pred hccccCCCCCCCCCCcccCcccccCCCCCC
Q 039741 376 NMQRMAPGPGPGPDVYREQPVYNMVVPPQQ 405 (506)
Q Consensus 376 ~~qr~~~~~~~~~d~yre~pvy~~~~p~~~ 405 (506)
++++| +|-.|+||-.||-||+|||+.
T Consensus 346 sv~~~----a~e~dg~~~~~~~~~~~~~~~ 371 (591)
T PRK15244 346 AARTL----AYEGDGYRRAPVNNMMPPPPP 371 (591)
T ss_pred hhhhh----eecCCCcccccCCCCCCCccc
Confidence 57888 799999999999999997654
No 63
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=29.64 E-value=18 Score=42.06 Aligned_cols=10 Identities=30% Similarity=0.394 Sum_probs=5.5
Q ss_pred HHHHHHHhHh
Q 039741 80 SMISKLAALC 89 (506)
Q Consensus 80 eL~~KLs~l~ 89 (506)
.+++||.+.+
T Consensus 2 ~vi~~ie~a~ 11 (799)
T PF09606_consen 2 KVISKIEEAM 11 (799)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 3556665544
No 64
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=29.60 E-value=64 Score=33.42 Aligned_cols=45 Identities=31% Similarity=0.642 Sum_probs=33.2
Q ss_pred HHHHHHhHhCCCceEEEEeC-CCCCcCceeeccCchHHHHHHHHHHHhhh
Q 039741 81 MISKLAALCGDNDVSFKYQL-PGEDLDALISVTNDDDLEHMMNEYDRLYR 129 (506)
Q Consensus 81 L~~KLs~l~g~~dvsLKYQL-PgEDLDaLISVssDEDL~nMmeEYDRl~r 129 (506)
.+++|.+.|....+.|-|-| |+.+.. .++++|++.|+..++.|..
T Consensus 57 ~l~~L~~~a~~~~V~Fv~aisPg~~~~----~s~~~d~~~L~~K~~ql~~ 102 (306)
T PF07555_consen 57 ELKELADAAKANGVDFVYAISPGLDIC----YSSEEDFEALKAKFDQLYD 102 (306)
T ss_dssp HHHHHHHHHHHTT-EEEEEEBGTTT------TSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCEEEEEECcccccc----cCcHHHHHHHHHHHHHHHh
Confidence 34556666655568899999 888743 5699999999999999975
No 65
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.49 E-value=59 Score=35.84 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.5
Q ss_pred EEeCCC
Q 039741 97 KYQLPG 102 (506)
Q Consensus 97 KYQLPg 102 (506)
-|++|+
T Consensus 87 ~g~~pn 92 (505)
T COG5624 87 EGRAPN 92 (505)
T ss_pred cccCCC
Confidence 344443
No 66
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=27.05 E-value=1.2e+02 Score=26.52 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=32.1
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
++-.+|++..|.|+.+.+-.+|+.++++..|.. ...|-|.
T Consensus 32 Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 32 IETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 466689999999999999999999999987632 3556554
No 67
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=27.02 E-value=97 Score=31.60 Aligned_cols=9 Identities=78% Similarity=0.837 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 039741 250 EQQQQHHQQ 258 (506)
Q Consensus 250 eqeqq~~qq 258 (506)
||=||||||
T Consensus 5 EQyQqHQqQ 13 (230)
T PF06752_consen 5 EQYQQHQQQ 13 (230)
T ss_pred HHHHHHHHH
Confidence 333444333
No 68
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=25.99 E-value=38 Score=38.02 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=6.5
Q ss_pred CchHHHHHHHH
Q 039741 113 NDDDLEHMMNE 123 (506)
Q Consensus 113 sDEDL~nMmeE 123 (506)
+-++|+.|++.
T Consensus 321 tR~efe~l~~~ 331 (657)
T PTZ00186 321 SRSKFEGITQR 331 (657)
T ss_pred cHHHHHHHHHH
Confidence 45666666554
No 69
>PF14107 DUF4280: Domain of unknown function (DUF4280)
Probab=25.83 E-value=38 Score=29.01 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=12.8
Q ss_pred CCeEEEEeecCCEeec
Q 039741 38 AYKAKFMCSYGGKIHP 53 (506)
Q Consensus 38 ~~KVKlmCSyGGrIlP 53 (506)
..+=+++|.|||.|..
T Consensus 87 ~~~S~~~C~~gG~I~i 102 (108)
T PF14107_consen 87 TEDSKLTCAYGGIISI 102 (108)
T ss_pred ccCeEEeccCCCEEEE
Confidence 4456899999999875
No 70
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.75 E-value=1e+02 Score=26.36 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=29.0
Q ss_pred eecCCEeecC--CCCCCeeeecCceeEEEecCC----CChHHHHHHHHhHh
Q 039741 45 CSYGGKIHPR--PHDNQLAYIGGETKILAADRA----IKFASMISKLAALC 89 (506)
Q Consensus 45 CSyGGrIlPR--P~DGkLrYVGGETRIVsV~Rs----iSF~eL~~KLs~l~ 89 (506)
--||=.|.-- ..||+++||- +-.|+|+ +.|.-|+.||.++|
T Consensus 22 l~fGl~i~rgd~sTDGkWCyiv----~wVv~~~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 22 LEFGLNITRGDDSTDGRWCYIV----FWVVPRPPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred HHhceEEEecccccCCcEEEEE----EEEecCCCCCcccHHHHHHHHHhcC
Confidence 3477666622 2699999973 2334454 78999999999987
No 71
>KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair]
Probab=25.69 E-value=2.4e+02 Score=31.20 Aligned_cols=89 Identities=27% Similarity=0.416 Sum_probs=53.6
Q ss_pred EEee--cCCEeecCCCCCCeeeecCceeEEEecCCC----ChHHHHHHHHhHh----------C--CCceEEEEeCCCCC
Q 039741 43 FMCS--YGGKIHPRPHDNQLAYIGGETKILAADRAI----KFASMISKLAALC----------G--DNDVSFKYQLPGED 104 (506)
Q Consensus 43 lmCS--yGGrIlPRP~DGkLrYVGGETRIVsV~Rsi----SF~eL~~KLs~l~----------g--~~dvsLKYQLPgED 104 (506)
|-|| +||+|+++- |+.+-|++.|.. +++.|-.||-+|| | ...++|||.+-.=+
T Consensus 329 Lr~slG~g~t~~~~~---------~eRKsis~ErTFs~~sd~~il~~k~qel~~~lsedlqK~glv~rtvtiKlK~ssFe 399 (490)
T KOG2094|consen 329 LRCSLGLGTTILDED---------GERKSISSERTFSSTSDPSILYSKLQELCQMLSEDLQKEGLVGRTVTIKLKTSSFE 399 (490)
T ss_pred HHHhhcCCCCcCccc---------cccccccceeeecccCCHHHHHHHHHHHHHHHHHHHHhcCcccceEEEEEecccee
Confidence 3466 467888643 446667777765 4666777777766 1 24699999987644
Q ss_pred cCc---ee--eccCchHHHHHHHHHHHhhhcCCCCCeEEEEEecC
Q 039741 105 LDA---LI--SVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFPA 144 (506)
Q Consensus 105 LDa---LI--SVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLFp~ 144 (506)
.-+ -| =|.+.||+...--|.-+-+ .+.+|||.=...
T Consensus 400 v~Tr~~t~s~vv~S~edi~k~aleLLk~e----~~~~iRLlGvR~ 440 (490)
T KOG2094|consen 400 VHTRQKTISQVVHSEEDILKPALELLKQE----YPMTIRLLGVRA 440 (490)
T ss_pred eeeccCchhhhhccHHHHHHHHHHHHHhh----cCceEeeeeeeH
Confidence 221 11 1467788776665554432 355787754433
No 72
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=25.27 E-value=24 Score=41.09 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=0.0
Q ss_pred CcceEeec
Q 039741 329 EQPVYMIS 336 (506)
Q Consensus 329 eq~vy~~~ 336 (506)
.|.+|++.
T Consensus 350 qqql~~vq 357 (799)
T PF09606_consen 350 QQQLKLVQ 357 (799)
T ss_dssp --------
T ss_pred cchHHHHH
Confidence 34444443
No 73
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=23.80 E-value=1.4e+02 Score=22.86 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=29.3
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCCc--eEEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDND--VSFKY 98 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~d--vsLKY 98 (506)
..|.+.-|.|+.+.+..+|+.++++..+... ..|-|
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee
Confidence 4688999999999999999999999987443 44444
No 74
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=23.60 E-value=3.3e+02 Score=24.34 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=49.5
Q ss_pred eEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCC------------------CCc-C-ceeeccCchHHHHHHHHHHHh
Q 039741 68 KILAADRAIKFASMISKLAALCGDNDVSFKYQLPG------------------EDL-D-ALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 68 RIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPg------------------EDL-D-aLISVssDEDL~nMmeEYDRl 127 (506)
.|.+|=|..++.+++..|.++ |...+++ ++.=| +-+ . .|.-|.+|||++..++---+.
T Consensus 3 ~I~AIIRp~kl~~v~~AL~~~-G~~g~Tv-~~V~G~G~q~g~~~~~rg~~~~~~~~~k~~ieivv~de~ve~vv~~I~~~ 80 (112)
T PRK10665 3 LVTVIIKPFKLEDVREALSSI-GIQGLTV-TEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIISKA 80 (112)
T ss_pred EEEEEECHHHHHHHHHHHHHC-CCCcEEE-EeeEecCCCCCCcceeccceeeecccceEEEEEEEChHhHHHHHHHHHHH
Confidence 588899999999999999997 6554443 11111 001 1 345577899999998766554
Q ss_pred hhcCCCCCeEEEEEecCCC
Q 039741 128 YRASAKPARMRLFLFPAGT 146 (506)
Q Consensus 128 ~r~s~~p~RLRvFLFp~~~ 146 (506)
.+ ..+.+-=++|+.|..+
T Consensus 81 a~-TG~~GDGkIfV~pV~~ 98 (112)
T PRK10665 81 AY-TGKIGDGKIFVAELQR 98 (112)
T ss_pred hc-cCCCCCcEEEEEEhhh
Confidence 43 1233334789998875
No 75
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.24 E-value=2e+02 Score=30.07 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=40.6
Q ss_pred cCCCChHHHHHHHHhHh--CCCceEEEEeCCCCCcCceeeccCc--hHHHHHHHHHHHhhhcCCCCCeEEEEEecCCCCC
Q 039741 73 DRAIKFASMISKLAALC--GDNDVSFKYQLPGEDLDALISVTND--DDLEHMMNEYDRLYRASAKPARMRLFLFPAGTTS 148 (506)
Q Consensus 73 ~RsiSF~eL~~KLs~l~--g~~dvsLKYQLPgEDLDaLISVssD--EDL~nMmeEYDRl~r~s~~p~RLRvFLFp~~~~~ 148 (506)
.+..++.+|+..+.+.. +...+.|.|-| |.--|| ||++.|.+....+ +++|-|.|-++..
T Consensus 228 nk~~~l~~l~~a~~~~~~~~~~~v~ieyvL--------I~GvNDs~e~~~~L~~ll~~l--------~~~vnlIPyn~~~ 291 (349)
T PRK14463 228 NRRYPLAELLAACKAFPLPGRRKITIEYVM--------IRGLNDSLEDAKRLVRLLSDI--------PSKVNLIPFNEHE 291 (349)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCeEEEEEEE--------eCCCCCCHHHHHHHHHHHhcc--------CceEEEEecCCCC
Confidence 34444555554443332 23457788854 333344 8898888777543 2456667777621
Q ss_pred CCCCCC-CCCcccchhhhcc
Q 039741 149 SFGSEG-SKSDRDRFVDALN 167 (506)
Q Consensus 149 sfgs~~-s~Se~q~fVdAlN 167 (506)
..+-.. ++.....|.+.|.
T Consensus 292 ~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 292 GCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 111111 1222246777764
No 76
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=22.52 E-value=2.7e+02 Score=31.41 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=66.1
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHh---CCCceEEEEeCC-C-CCcCceeeccCchHHHHHHHHHHHhhhcCCCC
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALC---GDNDVSFKYQLP-G-EDLDALISVTNDDDLEHMMNEYDRLYRASAKP 134 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~---g~~dvsLKYQLP-g-EDLDaLISVssDEDL~nMmeEYDRl~r~s~~p 134 (506)
|.=.|.+...|.+ |.+.|+--.+.|.+.+ +..+ |+|--- + .-=||+|-+++.||+++-++. ||..- ..
T Consensus 3 i~~e~~~~~~vr~-rGLPwsat~~ei~~Ff~~~~I~~--~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m---g~ 75 (510)
T KOG4211|consen 3 IENEGSTAFEVRL-RGLPWSATEKEILDFFSNCGIEN--LEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESM---GH 75 (510)
T ss_pred cccCCCcceEEEe-cCCCccccHHHHHHHHhcCceeE--EEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHh---CC
Confidence 3334555555554 6667776666666655 3333 333221 1 113799999999999998876 44432 22
Q ss_pred CeEEEEEecCCC-CCCCCCCCCCCcccchhhhccCCCCCCCCCccccCCCcccccccC
Q 039741 135 ARMRLFLFPAGT-TSSFGSEGSKSDRDRFVDALNSGPSHVTDSKKIANNVDFLFGLEK 191 (506)
Q Consensus 135 ~RLRvFLFp~~~-~~sfgs~~s~Se~q~fVdAlNg~~~~~~~~sss~~n~D~Lfgld~ 191 (506)
.=|-||-.-..+ +-.|-.....+...-+|.-|-|++-.+.+. .-.+||-+|+-
T Consensus 76 RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~----dI~~FFaGL~I 129 (510)
T KOG4211|consen 76 RYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEE----DIVEFFAGLEI 129 (510)
T ss_pred ceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHH----HHHHHhcCCcc
Confidence 345555443333 223333333333445677777776444331 23577777774
No 77
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=22.01 E-value=50 Score=39.70 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchhhhhh
Q 039741 240 QRQLQRLQIRE-QQQQHHQQQQQQQQQQQHHEQPHMQEAI 278 (506)
Q Consensus 240 QrQLQRLQIae-qeqq~~qq~qqq~q~q~~~~q~~~~~~~ 278 (506)
||++--.+-.- ++|+||+|++++|-++.|.++|+||...
T Consensus 1154 ~rd~p~a~~~~~mqq~~q~qam~~QsaeaQr~aqqqq~~l 1193 (1229)
T KOG2133|consen 1154 QRDLPDAQHMPLMQQAHQLQAMHAQSAEAQRLAQQQQPWL 1193 (1229)
T ss_pred hhcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 78
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=21.75 E-value=4.1e+02 Score=24.50 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=42.2
Q ss_pred ceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEec
Q 039741 66 ETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFP 143 (506)
Q Consensus 66 ETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLFp 143 (506)
..+||-|--.+-+.-+++-|.+++... +..++.-+.++.+.+||. +.+|.+.+.+.. .+++++++-
T Consensus 97 ~~~~v~iagG~Giap~~~~l~~~~~~~--------~~~~v~l~~~~r~~~~~~-~~~el~~l~~~~---~~~~~~~~~ 162 (222)
T cd06194 97 EGPLLLVGAGTGLAPLWGIARAALRQG--------HQGEIRLVHGARDPDDLY-LHPALLWLAREH---PNFRYIPCV 162 (222)
T ss_pred CCCEEEEecCcchhhHHHHHHHHHhcC--------CCccEEEEEecCChhhcc-CHHHHHHHHHHC---CCeEEEEEE
Confidence 356777777788888888887776322 123344566777777775 677887776422 357776553
No 79
>PRK10667 Hha toxicity attenuator; Provisional
Probab=21.67 E-value=76 Score=29.62 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=28.7
Q ss_pred CCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHH
Q 039741 74 RAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYD 125 (506)
Q Consensus 74 RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYD 125 (506)
.++.+.||+..+++... .|.||| |. +.||..+||||-
T Consensus 44 ~nlqLNeLIEHIa~f~~--~fKIKY--p~-----------~~~l~~~ideYL 80 (122)
T PRK10667 44 VNLQLNELIEHIATFAL--NFKIKY--PE-----------DSKLIEQIDEYL 80 (122)
T ss_pred hhhhHHHHHHHHHHHHH--HhhccC--Cc-----------HhhHHHHHHHHH
Confidence 45689999999999863 377888 43 468889999983
No 80
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=21.45 E-value=2e+02 Score=31.12 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=4.4
Q ss_pred CCCChHHHH
Q 039741 232 HGLNPVEIQ 240 (506)
Q Consensus 232 pvV~PaeiQ 240 (506)
-||.|..+.
T Consensus 53 VmvD~~~v~ 61 (387)
T PRK09510 53 VMVDPGAVV 61 (387)
T ss_pred eecChHHHH
Confidence 355555533
No 81
>PHA02909 hypothetical protein; Provisional
Probab=21.32 E-value=1e+02 Score=26.04 Aligned_cols=21 Identities=38% Similarity=0.736 Sum_probs=18.1
Q ss_pred CcceeEeeecCCCceEEEecC
Q 039741 438 TGYTQVAYDSGVGRQVYYTAP 458 (506)
Q Consensus 438 ~~y~qvayds~~grqvyyt~~ 458 (506)
-.|.-+.-|-|.|+.||||.-
T Consensus 10 pnylmlsvdygngkkvyyten 30 (72)
T PHA02909 10 PNYLMLSVDYGNGKKVYYTEN 30 (72)
T ss_pred CCeEEEEEecCCCeEEEEecc
Confidence 468888889999999999974
No 82
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=21.24 E-value=2.2e+02 Score=23.13 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=26.8
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN 92 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~ 92 (506)
+-..|.+..|.|+.+.+-.+|+.++++.++..
T Consensus 8 k~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~ 39 (80)
T cd01792 8 KMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP 39 (80)
T ss_pred EeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC
Confidence 33458888899999999999999999988643
No 83
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=21.05 E-value=2.6e+02 Score=23.82 Aligned_cols=63 Identities=14% Similarity=0.345 Sum_probs=40.2
Q ss_pred CceeEEEecCC---CChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 039741 65 GETKILAADRA---IKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFL 141 (506)
Q Consensus 65 GETRIVsV~Rs---iSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFL 141 (506)
|..+|+.+.|+ ....+|+.+|.+. +. .+.+- -.++++.|+++.++++..... .+|.+++
T Consensus 24 g~~~v~~~~r~~~~~~~~~l~~~l~~~-~~---~~~~~--------~~D~~~~~~~~~~~~~~~~~~------~~ld~li 85 (167)
T PF00106_consen 24 GARVVILTSRSEDSEGAQELIQELKAP-GA---KITFI--------ECDLSDPESIRALIEEVIKRF------GPLDILI 85 (167)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHHHHT-TS---EEEEE--------ESETTSHHHHHHHHHHHHHHH------SSESEEE
T ss_pred CceEEEEeeeccccccccccccccccc-cc---ccccc--------ccccccccccccccccccccc------ccccccc
Confidence 56788999998 4455565555532 21 22222 134788999999999987322 3588887
Q ss_pred ecCC
Q 039741 142 FPAG 145 (506)
Q Consensus 142 Fp~~ 145 (506)
.-..
T Consensus 86 ~~ag 89 (167)
T PF00106_consen 86 NNAG 89 (167)
T ss_dssp EECS
T ss_pred cccc
Confidence 7544
No 84
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=20.71 E-value=97 Score=23.31 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=35.5
Q ss_pred EecCCCChHHHHHHHHhHhCCCceEEEEeCCCCC-----cCceeeccCchHHHHHHHHHH
Q 039741 71 AADRAIKFASMISKLAALCGDNDVSFKYQLPGED-----LDALISVTNDDDLEHMMNEYD 125 (506)
Q Consensus 71 sV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgED-----LDaLISVssDEDL~nMmeEYD 125 (506)
.|+.+++-.+|+.-++.. | . ..++.|..+. -.++|...+-||..+.++.++
T Consensus 5 nlp~~~~~~~l~~~f~~~-g--~-v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 5 NLPPSTTEEDLRNFFSRF-G--P-VEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp SSTTT--HHHHHHHCTTS-S--B-EEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHhc-C--C-cceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 367888888887766654 3 1 3455554432 469999999999999999986
No 85
>PF12446 DUF3682: Protein of unknown function (DUF3682); InterPro: IPR022152 This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length.
Probab=20.67 E-value=77 Score=29.92 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCcc
Q 039741 204 VAVPPPPPPDYHV 216 (506)
Q Consensus 204 v~v~~p~~~e~~~ 216 (506)
...-...+||.++
T Consensus 73 AaAhnsSppegpa 85 (133)
T PF12446_consen 73 AAAHNSSPPEGPA 85 (133)
T ss_pred hhhcCCCCCCCcc
Confidence 3444455566654
No 86
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=20.58 E-value=1e+02 Score=33.79 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=24.5
Q ss_pred eeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEe
Q 039741 109 ISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF 142 (506)
Q Consensus 109 ISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLF 142 (506)
.||++++||.+++++|-..... +..|+-||+=
T Consensus 41 ysv~s~~eL~~~~~~~i~~w~~--~~~~VtlFvD 72 (425)
T PF04599_consen 41 YSVNSLDELRNSFEEYIQQWIK--NNGKVTLFVD 72 (425)
T ss_pred hhhCCHHHHHHHHHHHHHHHHh--cCCeEEEEEe
Confidence 4789999999999999887632 3356777663
No 87
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=20.50 E-value=1.4e+02 Score=31.86 Aligned_cols=69 Identities=26% Similarity=0.367 Sum_probs=44.2
Q ss_pred ceeEEEecCCC--ChHHHHHHHHhHh--CCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 039741 66 ETKILAADRAI--KFASMISKLAALC--GDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFL 141 (506)
Q Consensus 66 ETRIVsV~Rsi--SF~eL~~KLs~l~--g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFL 141 (506)
|-|=.+++|+- +|.+|..-+..+- -.-+|.|-|.=+..| |.-|+|||.|..-++ +. ..-||||+
T Consensus 28 EfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~hgD---LLPinNDDn~~ka~~--------sa-~PlLR~~i 95 (358)
T KOG3606|consen 28 EFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTHGD---LLPINNDDNLHKALS--------SA-RPLLRLLI 95 (358)
T ss_pred hhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCCCc---eecccCchhHHHHhh--------cc-Cchhhhhh
Confidence 34445566653 7777766555543 234699999988876 788999987654431 22 34688888
Q ss_pred ecCCC
Q 039741 142 FPAGT 146 (506)
Q Consensus 142 Fp~~~ 146 (506)
=-..+
T Consensus 96 Qkr~e 100 (358)
T KOG3606|consen 96 QKREE 100 (358)
T ss_pred hhhhh
Confidence 75543
No 88
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.20 E-value=2.6e+02 Score=30.63 Aligned_cols=67 Identities=24% Similarity=0.494 Sum_probs=43.5
Q ss_pred cCceeEEEec-CCC---ChHHHHHHHHhHhC----CCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCC
Q 039741 64 GGETKILAAD-RAI---KFASMISKLAALCG----DNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPA 135 (506)
Q Consensus 64 GGETRIVsV~-Rsi---SF~eL~~KLs~l~g----~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~ 135 (506)
-|..|||..- |.- .|.+++.||.+.+. .+||.+=| ||| +|||+++.++..+++. ..
T Consensus 264 sGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGF--PgE---------TeedFe~tl~lv~e~~-----fd 327 (437)
T COG0621 264 SGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGF--PGE---------TEEDFEETLDLVEEVR-----FD 327 (437)
T ss_pred cCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEEC--CCC---------CHHHHHHHHHHHHHhC-----CC
Confidence 4566666543 333 45567777777763 23444433 999 5999999999887763 44
Q ss_pred eEEEEEecCCC
Q 039741 136 RMRLFLFPAGT 146 (506)
Q Consensus 136 RLRvFLFp~~~ 146 (506)
++-+|.|+.-+
T Consensus 328 ~~~~F~YSpRp 338 (437)
T COG0621 328 RLHVFKYSPRP 338 (437)
T ss_pred EEeeeecCCCC
Confidence 77888885544
Done!