Query 039741
Match_columns 506
No_of_seqs 154 out of 226
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 22:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 99.5 3.1E-13 1.1E-17 116.5 11.2 75 63-146 15-89 (103)
2 1vd2_A Protein kinase C, IOTA 98.7 1.8E-07 6.3E-12 78.5 11.9 72 65-144 15-89 (89)
3 1q1o_A Cell division control p 97.8 5.2E-05 1.8E-09 65.0 8.1 70 65-142 22-98 (98)
4 2jrh_A Mitogen-activated prote 97.8 0.00016 5.4E-09 61.8 10.7 73 64-145 12-84 (94)
5 1pqs_A Cell division control p 97.7 6.1E-05 2.1E-09 61.7 7.0 69 66-142 2-77 (77)
6 2npt_B Mitogen-activated prote 97.7 0.0002 6.9E-09 61.7 10.0 71 64-143 28-98 (100)
7 2kkc_A Sequestosome-1; P62, PB 97.7 0.00011 3.7E-09 63.1 8.4 69 63-142 18-100 (102)
8 2c60_A Human mitogen-activated 97.7 0.00021 7.3E-09 62.4 10.1 71 64-143 39-109 (111)
9 2ktr_A Sequestosome-1; autopha 97.4 0.00051 1.7E-08 60.5 8.5 84 38-142 18-115 (117)
10 2bkf_A Zinc-finger protein NBR 97.3 0.001 3.5E-08 56.2 9.2 70 64-142 14-85 (87)
11 1oey_A P67-PHOX, neutrophil cy 97.3 0.00069 2.4E-08 56.4 8.1 66 66-142 14-81 (83)
12 1wmh_B Partitioning defective- 97.0 0.0028 9.4E-08 53.3 8.9 68 62-141 12-83 (86)
13 1wj6_A KIAA0049 protein, RSGI 97.0 0.0017 5.7E-08 56.3 7.3 70 65-143 23-94 (101)
14 3iot_A Maltose-binding protein 96.6 0.00097 3.3E-08 64.8 3.4 23 66-88 111-139 (449)
15 3iot_A Maltose-binding protein 96.5 0.0011 3.7E-08 64.5 2.7 10 136-145 241-250 (449)
16 1oey_J P40-PHOX, neutrophil cy 96.3 0.011 3.6E-07 51.8 7.8 58 64-124 17-78 (107)
17 1ip9_A BEM1 protein; ubiquitin 95.8 0.023 7.9E-07 47.9 7.1 56 65-123 21-76 (85)
18 2npt_A Dual specificity mitoge 83.4 3 0.0001 36.3 6.9 51 74-127 35-86 (106)
19 3a9j_A Ubiquitin; protein comp 69.9 6.2 0.00021 28.9 4.5 38 61-98 6-45 (76)
20 1k8r_B Protein kinase BYR2; si 67.7 7.9 0.00027 33.8 5.3 75 60-146 3-80 (110)
21 1qb3_A Cyclin-dependent kinase 66.8 1.3 4.4E-05 40.7 0.3 7 83-89 19-25 (150)
22 1hbw_A Regulatory protein GAL4 64.7 1.6 5.4E-05 34.6 0.4 43 78-124 5-47 (57)
23 1ndd_A NEDD8, protein (ubiquit 64.1 8.7 0.0003 28.1 4.3 37 62-98 7-45 (76)
24 2kzr_A Ubiquitin thioesterase 63.2 7.2 0.00025 30.6 3.9 45 60-105 5-52 (86)
25 1hyw_A GPW, head-TO-tail joini 62.2 20 0.00069 28.8 6.4 46 78-129 7-55 (68)
26 2bwf_A Ubiquitin-like protein 61.2 12 0.00041 27.7 4.7 35 64-98 12-48 (77)
27 1v86_A DNA segment, CHR 7, way 58.6 20 0.00069 28.7 5.9 39 38-92 15-53 (95)
28 3mtn_B UBA80, ubcep1, ubiquiti 56.8 11 0.00038 28.3 3.9 37 62-98 10-48 (85)
29 2dzi_A Ubiquitin-like protein 56.3 12 0.00042 27.9 4.0 35 64-98 16-52 (81)
30 1yx5_B Ubiquitin; proteasome, 54.6 16 0.00053 29.0 4.6 38 61-98 6-45 (98)
31 1wh3_A 59 kDa 2'-5'-oligoadeny 52.7 17 0.0006 27.7 4.4 34 65-98 17-52 (87)
32 3q3f_A Ribonuclease/ubiquitin 52.4 13 0.00046 34.3 4.4 51 41-92 87-142 (189)
33 3k9o_B Ubiquitin, UBB+1; E2-25 52.0 18 0.00062 28.2 4.5 39 60-98 6-46 (96)
34 2hj8_A Interferon-induced 17 k 51.9 25 0.00087 27.4 5.3 35 64-98 13-49 (88)
35 4dwf_A HLA-B-associated transc 51.0 19 0.00066 27.8 4.5 38 61-98 11-50 (90)
36 3phx_B Ubiquitin-like protein 49.9 21 0.00073 26.8 4.5 38 61-98 10-49 (79)
37 3n3k_B Ubiquitin; hydrolase, p 49.4 19 0.00066 27.1 4.2 38 61-98 9-48 (85)
38 4hc4_A Protein arginine N-meth 48.5 38 0.0013 33.9 7.2 80 64-145 104-198 (376)
39 4hcn_B Polyubiquitin, ubiquiti 44.1 22 0.00075 28.4 3.9 35 64-98 31-67 (98)
40 4eew_A Large proline-rich prot 43.7 30 0.001 26.6 4.5 39 60-98 22-62 (88)
41 2kk8_A Uncharacterized protein 43.4 32 0.0011 27.1 4.7 37 62-98 17-55 (84)
42 3q7e_A Protein arginine N-meth 42.5 73 0.0025 30.5 8.0 64 65-129 88-164 (349)
43 1sif_A Ubiquitin; hydrophobic 40.9 28 0.00094 27.3 4.0 37 62-98 16-54 (88)
44 2kd0_A LRR repeats and ubiquit 40.2 43 0.0015 26.2 5.0 36 63-98 19-56 (85)
45 2pjh_A Protein NPL4, nuclear p 38.8 14 0.00049 29.3 2.0 39 63-102 12-52 (80)
46 2uyz_B Small ubiquitin-related 38.6 38 0.0013 25.4 4.3 36 63-98 11-48 (79)
47 3b08_A Polyubiquitin-C, ubiqui 38.1 79 0.0027 26.0 6.5 39 60-98 81-121 (152)
48 3dbh_I NEDD8; cell cycle, acti 37.9 26 0.00089 26.6 3.3 35 64-98 21-57 (88)
49 3v6c_B Ubiquitin; structural g 37.3 33 0.0011 26.7 3.9 35 64-98 26-62 (91)
50 1wy8_A NP95-like ring finger p 36.6 44 0.0015 25.6 4.5 33 66-98 19-54 (89)
51 3vdz_A Ubiquitin-40S ribosomal 36.3 43 0.0015 27.6 4.6 35 64-98 44-80 (111)
52 2ojr_A Ubiquitin; lanthide-bin 35.9 42 0.0014 27.5 4.4 34 65-98 45-80 (111)
53 1wyw_B Ubiquitin-like protein 35.8 41 0.0014 26.9 4.3 35 64-98 30-66 (97)
54 2wyq_A HHR23A, UV excision rep 35.5 53 0.0018 24.7 4.7 36 63-98 13-53 (85)
55 2kdi_A Ubiquitin, vacuolar pro 35.0 44 0.0015 27.8 4.5 39 60-98 14-54 (114)
56 1ttn_A DC-UBP, dendritic cell- 34.2 27 0.00092 28.4 3.0 47 37-98 20-68 (106)
57 1v5o_A 1700011N24RIK protein; 33.4 57 0.002 26.2 4.8 35 64-98 20-56 (102)
58 1vfj_A Nitrogen regulatory pro 33.1 1.4E+02 0.0047 24.8 7.2 77 68-146 3-98 (116)
59 2faz_A Ubiquitin-like containi 32.4 61 0.0021 24.1 4.5 35 64-98 11-49 (78)
60 1wxv_A BAG-family molecular ch 32.1 80 0.0027 24.6 5.4 33 67-99 18-57 (92)
61 4fbj_B NEDD8; effector-HOST ta 31.7 47 0.0016 25.9 3.9 38 61-98 6-45 (88)
62 1v5t_A 8430435I17RIK protein; 31.0 40 0.0014 26.6 3.5 27 65-91 16-43 (90)
63 3m62_B UV excision repair prot 29.8 34 0.0012 27.9 3.0 39 60-98 6-46 (106)
64 1wjn_A Tubulin-folding protein 29.7 39 0.0013 27.0 3.2 36 64-99 21-58 (97)
65 1wgg_A Ubiquitin carboxyl-term 28.9 63 0.0021 26.0 4.3 27 65-91 16-43 (96)
66 1wia_A Hypothetical ubiquitin- 28.6 50 0.0017 25.9 3.6 34 65-99 17-50 (95)
67 2klc_A Ubiquilin-1; ubiquitin- 28.4 72 0.0025 25.8 4.6 32 67-98 36-69 (101)
68 3u30_A Ubiquitin, linear DI-ub 28.4 85 0.0029 27.1 5.4 38 61-98 102-141 (172)
69 3b08_A Polyubiquitin-C, ubiqui 28.2 68 0.0023 26.4 4.5 36 63-98 8-45 (152)
70 3t9z_A GLNK3, nitrogen regulat 28.0 1.7E+02 0.0059 24.9 7.1 78 67-146 2-98 (118)
71 2l7r_A Ubiquitin-like protein 27.1 53 0.0018 26.0 3.6 35 65-99 27-63 (93)
72 3nku_A DRRA, SIDM; posttransla 26.4 38 0.0013 31.5 2.9 25 103-127 104-128 (213)
73 2kan_A Uncharacterized protein 26.3 66 0.0023 25.7 4.0 32 67-98 26-59 (94)
74 3e05_A Precorrin-6Y C5,15-meth 26.2 2.9E+02 0.0098 23.4 8.2 66 64-129 62-133 (204)
75 3ncq_A Nitrogen regulatory pro 26.2 2.4E+02 0.0081 24.1 7.7 78 67-146 2-98 (119)
76 3b1l_X E3 ubiquitin-protein li 31.6 15 0.0005 27.3 0.0 31 61-91 6-36 (76)
77 3u30_A Ubiquitin, linear DI-ub 25.0 77 0.0026 27.4 4.5 36 63-98 28-65 (172)
78 1uel_A HHR23B, UV excision rep 24.9 85 0.0029 24.8 4.4 37 62-98 7-48 (95)
79 1wx7_A Ubiquilin 3; ubiquitin- 24.4 79 0.0027 25.5 4.2 31 69-99 30-62 (106)
80 3ce8_A Putative PII-like nitro 23.8 1.1E+02 0.0039 26.6 5.3 93 50-146 5-115 (120)
81 1j8c_A Ubiquitin-like protein 23.5 3.3E+02 0.011 22.9 9.7 33 67-99 43-77 (125)
82 1wx8_A Riken cDNA 4931431F19; 23.1 59 0.002 25.4 3.1 25 67-91 28-52 (96)
83 2cz4_A Hypothetical protein TT 22.5 2.8E+02 0.0096 23.6 7.4 74 67-145 26-111 (119)
84 1we7_A SF3A1 protein; structur 22.5 73 0.0025 26.2 3.7 36 63-98 43-80 (115)
85 3rt3_B Ubiquitin-like protein 22.3 1.3E+02 0.0045 25.4 5.3 37 61-97 8-46 (159)
86 2eg2_A Nitrogen regulatory pro 22.1 3.3E+02 0.011 22.3 7.6 78 68-147 3-99 (112)
87 1hwu_A PII protein; herbaspiri 20.9 2.9E+02 0.01 22.5 7.0 78 67-146 2-98 (112)
88 1yqb_A Ubiquilin 3; structural 20.5 1E+02 0.0035 24.9 4.1 30 69-98 35-66 (100)
89 3bzq_A Nitrogen regulatory pro 20.4 2.4E+02 0.0081 23.2 6.4 78 67-146 4-100 (114)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.46 E-value=3.1e-13 Score=116.48 Aligned_cols=75 Identities=25% Similarity=0.458 Sum_probs=66.5
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEe
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF 142 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLF 142 (506)
.+||+|||.++|.|+|.||..|+.++||.. +.|.|+ +++.||+++|+|||++.||+|||.. ...-|||||.
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~-ldL~y~----n~EllIpl~sQeDLDkaIellDrss----~~kSLrIlL~ 85 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFGQS-MDLHYT----NNELVIPLTTQDDLDKAVELLDRSI----HMKSLKILLV 85 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHSSC-EEEEEC----SSSSCEECCSHHHHHHHHHHHHHCS----SCCSEEEEEE
T ss_pred ecCeEEEEeccCCccHHHHHHHHHHHhCCe-eeEEEe----cceEEEeccCHHHHHHHHHHHccCC----cccceEEEEe
Confidence 378999999999999999999999999986 999999 7899999999999999999999852 2335889998
Q ss_pred cCCC
Q 039741 143 PAGT 146 (506)
Q Consensus 143 p~~~ 146 (506)
+.+.
T Consensus 86 ~~~~ 89 (103)
T 2cu1_A 86 INGS 89 (103)
T ss_dssp ECCC
T ss_pred cCCC
Confidence 7764
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.69 E-value=1.8e-07 Score=78.46 Aligned_cols=72 Identities=19% Similarity=0.404 Sum_probs=61.0
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCC---CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 039741 65 GETKILAADRAIKFASMISKLAALCGD---NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFL 141 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~---~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFL 141 (506)
|+.|+++|+.+++|.+|..||.++|.. ..|+|||- +|| ..+|++++|+||+..|.-|+.- +-.+|.|.+
T Consensus 15 gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~--DEe-GD~itisSd~EL~eAl~l~~~n-----~~~~l~ihv 86 (89)
T 1vd2_A 15 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEE-GDPCTVSSQLELEEAFRLYELN-----KDSELLIHV 86 (89)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC--CSS-SCCEECCSHHHHHHHHHHHHHT-----SCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE--CCC-CCcccccCHHHHHHHHHHHHcc-----CCCCEEEEE
Confidence 458999999999999999999999963 45999998 676 7899999999999999887542 235899999
Q ss_pred ecC
Q 039741 142 FPA 144 (506)
Q Consensus 142 Fp~ 144 (506)
||.
T Consensus 87 f~~ 89 (89)
T 1vd2_A 87 FPC 89 (89)
T ss_dssp EEC
T ss_pred ccC
Confidence 973
No 3
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=97.83 E-value=5.2e-05 Score=64.98 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=55.8
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCC-------CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeE
Q 039741 65 GETKILAADRAIKFASMISKLAALCGD-------NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARM 137 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~-------~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RL 137 (506)
++++.|.|+.+|+|.+|+.|+.+.++. ..+.|||+ +|| ...|++.+||||+-.+++..... .++|
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEd-GD~Vtl~sddDl~~A~e~~~e~~-----~~~l 93 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN-----EKFL 93 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSS-SCEEEECSHHHHHHHHHHHHHTT-----CCEE
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh-----cCeE
Confidence 589999999999999999999886631 23689998 454 47999999999999998884431 3578
Q ss_pred EEEEe
Q 039741 138 RLFLF 142 (506)
Q Consensus 138 RvFLF 142 (506)
-|+++
T Consensus 94 ~Iwv~ 98 (98)
T 1q1o_A 94 NIRLY 98 (98)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 4
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=97.81 E-value=0.00016 Score=61.82 Aligned_cols=73 Identities=25% Similarity=0.503 Sum_probs=61.9
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEec
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFP 143 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLFp 143 (506)
-||.|||-++|.++|.||..|+...||.. +.|-|- +. .-+|-+.|-|||+.-+|-.||-. .-.-|||.|..
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq~-ldl~y~--nn--EL~iPL~~Q~DLDkAvelLDrs~----~mkSLRIlL~~ 82 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFGQP-LDLHYM--NN--ELSILLKNQDDLDKAIDILDRSS----SMKSLRILLLS 82 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHCSS-EEEEEE--CS--SCEEECCSHHHHHHHHHHHHHST----TTTEEEEEEEE
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCe-eeeEEe--cc--eeEEeccCHHHHHHHHHHhccCc----cccceEEEEEc
Confidence 48999999999999999999999999876 899998 33 36999999999999999988742 23468999886
Q ss_pred CC
Q 039741 144 AG 145 (506)
Q Consensus 144 ~~ 145 (506)
..
T Consensus 83 ~~ 84 (94)
T 2jrh_A 83 QD 84 (94)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 5
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=97.75 E-value=6.1e-05 Score=61.74 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=57.4
Q ss_pred ceeEEEecCCCChHHHHHHHHhHhC-C------CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEE
Q 039741 66 ETKILAADRAIKFASMISKLAALCG-D------NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMR 138 (506)
Q Consensus 66 ETRIVsV~RsiSF~eL~~KLs~l~g-~------~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLR 138 (506)
+++.|.|+.+|+|.+|+.|+.+.++ . ..+.|||+ +|| ..+|++.+||||.--++...... .++|-
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEd-GD~Vti~sddDl~~A~~~~~~~~-----~~~le 73 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN-----EKFLN 73 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETT-TEEEECCSTTHHHHHHHHHHHHC-----CCEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh-----cCeEE
Confidence 6899999999999999999999885 2 45889998 554 68999999999999998774331 35888
Q ss_pred EEEe
Q 039741 139 LFLF 142 (506)
Q Consensus 139 vFLF 142 (506)
|++|
T Consensus 74 iWv~ 77 (77)
T 1pqs_A 74 IRLY 77 (77)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8876
No 6
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=97.71 E-value=0.0002 Score=61.75 Aligned_cols=71 Identities=25% Similarity=0.467 Sum_probs=59.9
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEec
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFP 143 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLFp 143 (506)
-||.|||-++|.++|.||..|+...||.. +.|-|- +. .-+|-+.|-|||+.-||-.||-. .-.-|||.|..
T Consensus 28 ~gEkRIi~f~RPv~f~el~~kv~~afGq~-ldl~y~--nn--EL~iPL~~Q~DLDkAvelLDrs~----~~kSLrIlL~~ 98 (100)
T 2npt_B 28 RGEKRILQFPRPVKLEDLRSKAKIAFGQS-MDLHYT--NN--ELVIPLTTQDDLDKAVELLDRSI----HMKSLKILLVI 98 (100)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHTSC-EEEEEE--ET--TEEEECCCHHHHHHHHHHHHHCS----SCCSEEEEEEE
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCe-eeeEEe--cc--eeEEecccHHHHHHHHHHhccCc----cccceEEEEec
Confidence 37999999999999999999999999876 889998 33 46999999999999999988742 22358988864
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=97.71 E-value=0.00011 Score=63.10 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=55.7
Q ss_pred ecCceeEEEecCC-----------CChHHHHHHHHhHhC---CCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhh
Q 039741 63 IGGETKILAADRA-----------IKFASMISKLAALCG---DNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLY 128 (506)
Q Consensus 63 VGGETRIVsV~Rs-----------iSF~eL~~KLs~l~g---~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~ 128 (506)
.+.|.|-++++++ .+|.+|+.|+.++|. ...|.|||. +|| .-||+++|||||...+..-
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--Ded-GDlItiSsDeEL~~Al~~~---- 90 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AER-GDLVAFSSDEELTMAMSYV---- 90 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTT-CCEEEECSHHHHHHHHHHC----
T ss_pred CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEEecCHHHHHHHHHhc----
Confidence 4789999999875 489999999999992 345999999 555 5699999999999888532
Q ss_pred hcCCCCCeEEEEEe
Q 039741 129 RASAKPARMRLFLF 142 (506)
Q Consensus 129 r~s~~p~RLRvFLF 142 (506)
+..-||||+-
T Consensus 91 ----~~~~lRlyVk 100 (102)
T 2kkc_A 91 ----KDDIFRIYIK 100 (102)
T ss_dssp ----CSSEEEEEEE
T ss_pred ----CCCeEEEEEE
Confidence 2457999974
No 8
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=97.70 E-value=0.00021 Score=62.41 Aligned_cols=71 Identities=25% Similarity=0.517 Sum_probs=59.8
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEec
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFP 143 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLFp 143 (506)
-||.|||-++|.++|.||..|+...||.. +.|-|- +. .-+|-+.|-|||+.-||-.||-. .-.-|||.|..
T Consensus 39 ~gEKRIiqf~RPvkf~dl~qkv~~afGq~-ldl~y~--nn--EL~IPL~~Q~DLDkAvelLDrs~----~mkSLRIlL~~ 109 (111)
T 2c60_A 39 NGERRIIAFSRPVKYEDVEHKVTTVFGQP-LDLHYM--NN--ELSILLKNQDDLDKAIDILDRSS----SMKSLRILLLS 109 (111)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHSSC-CEEEEE--CS--SCEEECCSHHHHHHHHHHHHHCS----SCCSEEEEEEC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCe-eeeEEe--cc--eEEEecccHHHHHHHHHHhccCc----cccceEEEEec
Confidence 37999999999999999999999999876 889888 33 46999999999999999988742 22358988864
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=97.40 E-value=0.00051 Score=60.47 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCeEEEEeecCCEeecCCCCCCeeeecCceeEEEecCCC-----------ChHHHHHHHHhHhC---CCceEEEEeCCCC
Q 039741 38 AYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAI-----------KFASMISKLAALCG---DNDVSFKYQLPGE 103 (506)
Q Consensus 38 ~~KVKlmCSyGGrIlPRP~DGkLrYVGGETRIVsV~Rsi-----------SF~eL~~KLs~l~g---~~dvsLKYQLPgE 103 (506)
.+.+.+-|-++|+ +. .+.|.|-++++++. +|..|+.|+.++|. ...|.|||. +|
T Consensus 18 ~~~l~vKayl~~~------~~----~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DE 85 (117)
T 2ktr_A 18 MGSLTVKAYLLGK------EE----AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AE 85 (117)
T ss_dssp --CEEEEEEEECS------SS----CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CT
T ss_pred cccEEEEEEEecC------CC----CCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE--CC
Confidence 4456666766662 22 47899999998654 99999999999992 345999999 55
Q ss_pred CcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEe
Q 039741 104 DLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF 142 (506)
Q Consensus 104 DLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLF 142 (506)
| .-||.++|||||..-+.+- +..-||||+-
T Consensus 86 d-GDlItISsDeEL~~Al~~~--------~~~~lRlyVk 115 (117)
T 2ktr_A 86 R-GDLVAFSSDEELTMAMSYV--------KDDIFRIYIK 115 (117)
T ss_dssp T-CCEEEECSHHHHHHHHHHC--------CSSEEEEEEE
T ss_pred C-CCEEEecCHHHHHHHHHhc--------CCCeEEEEEE
Confidence 4 5699999999999877532 2357999974
No 10
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=97.34 E-value=0.001 Score=56.23 Aligned_cols=70 Identities=11% Similarity=0.248 Sum_probs=55.0
Q ss_pred cCceeEEEe--cCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 039741 64 GGETKILAA--DRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFL 141 (506)
Q Consensus 64 GGETRIVsV--~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFL 141 (506)
.||+|.+-| .|+++|.+|.+.+...|+..++.|||- +|| +-.|+|+++++++.++. +.+. +...|++++
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~~~ikY~--DEe-nD~v~i~Sq~E~eEAlk----va~k--~~n~L~m~v 84 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALK----MAVK--QGNQLQMQV 84 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE--CTT-SCEEEECSHHHHHHHHH----HHHH--TTTEEEEEE
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCCceEEEEE--cCC-CCEEEEecHHHHHHHHH----Hhcc--CCCEEEEEE
Confidence 467777545 679999999999999999889999997 555 67999999998876664 3332 234788887
Q ss_pred e
Q 039741 142 F 142 (506)
Q Consensus 142 F 142 (506)
|
T Consensus 85 ~ 85 (87)
T 2bkf_A 85 H 85 (87)
T ss_dssp E
T ss_pred e
Confidence 6
No 11
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.33 E-value=0.00069 Score=56.43 Aligned_cols=66 Identities=9% Similarity=0.191 Sum_probs=52.4
Q ss_pred ceeEEEecCCCChHHHHHHHHhHhCC--CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEe
Q 039741 66 ETKILAADRAIKFASMISKLAALCGD--NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF 142 (506)
Q Consensus 66 ETRIVsV~RsiSF~eL~~KLs~l~g~--~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLF 142 (506)
+|..|.|+++|+|++|..||++-+.. ..+.|.|.=+. =..++ +.+||||+.++. |. +-.||+|+..
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~--s~~~v-i~~d~dl~~aw~---~~-----~n~~LtL~C~ 81 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRD--SNELV-PLSEDSMKDAWG---QV-----KNYCLTLWCE 81 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTT--CSSCE-ECCTTTHHHHHT---TC-----BTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCC--CCCee-ccChHHHHHHHH---hc-----cCCcEEEEEe
Confidence 69999999999999999999998853 45789998663 36788 999999998882 21 2247888764
No 12
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.04 E-value=0.0028 Score=53.33 Aligned_cols=68 Identities=31% Similarity=0.396 Sum_probs=53.4
Q ss_pred eecCceeEEEecCC--CChHHHHHHHHhHhCC--CceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeE
Q 039741 62 YIGGETKILAADRA--IKFASMISKLAALCGD--NDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARM 137 (506)
Q Consensus 62 YVGGETRIVsV~Rs--iSF~eL~~KLs~l~g~--~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RL 137 (506)
.-++|.|=++++|+ .+|.+|..+|..++.. .+|.|+|.= +| ..||.|+|||+|..-+ .+.++ -|
T Consensus 12 kf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D--~d-GDLlpInnDdnl~~Al--------~~a~p-lL 79 (86)
T 1wmh_B 12 KFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD--AH-GDLLPLTNDDSLHRAL--------ASGPP-PL 79 (86)
T ss_dssp EETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC--TT-SCEEECCSHHHHHHHT--------TSSSS-CE
T ss_pred ecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC--CC-CCEeeecCHHHHHHHH--------HhCCC-cE
Confidence 45788999999977 8999999999999843 369999994 33 4599999999886443 23344 79
Q ss_pred EEEE
Q 039741 138 RLFL 141 (506)
Q Consensus 138 RvFL 141 (506)
|||+
T Consensus 80 Rl~I 83 (86)
T 1wmh_B 80 RLLV 83 (86)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=97.00 E-value=0.0017 Score=56.27 Aligned_cols=70 Identities=11% Similarity=0.236 Sum_probs=54.1
Q ss_pred CceeE--EEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEe
Q 039741 65 GETKI--LAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF 142 (506)
Q Consensus 65 GETRI--VsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLF 142 (506)
||++. |+-.|+++|.||.+.+...|+..++.|||- +|| +-.|+|+++++++.++.-+ +. +...|++++|
T Consensus 23 ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~--DEe-nD~V~i~Sq~E~eEAlkva----~k--~~n~L~m~V~ 93 (101)
T 1wj6_A 23 NEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMA----VK--QGNQLQMQVH 93 (101)
T ss_dssp TEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEE--CTT-SCEECCCSHHHHHHHHHHH----HH--HTSEEEEECC
T ss_pred CCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEe--cCC-CCEEEEecHHHHHHHHHHh----cc--CCCEEEEEEe
Confidence 34555 445679999999999999999889999997 555 6799999999887776533 22 1347999887
Q ss_pred c
Q 039741 143 P 143 (506)
Q Consensus 143 p 143 (506)
-
T Consensus 94 ~ 94 (101)
T 1wj6_A 94 E 94 (101)
T ss_dssp B
T ss_pred e
Confidence 4
No 14
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.61 E-value=0.00097 Score=64.82 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=15.9
Q ss_pred ceeEEEecCCC------ChHHHHHHHHhH
Q 039741 66 ETKILAADRAI------KFASMISKLAAL 88 (506)
Q Consensus 66 ETRIVsV~Rsi------SF~eL~~KLs~l 88 (506)
++++|...+++ +|.||..-+.++
T Consensus 111 ~~~~l~YNkdl~~~~P~Twdel~~~a~~l 139 (449)
T 3iot_A 111 EALSLIYNKDLLPNPPKTWEEIPALDKEL 139 (449)
T ss_dssp EECEEEEETTTCSSCCSBGGGHHHHHHHH
T ss_pred ceeEEEEehHHhccCCCCHHHHHHHHHHH
Confidence 57777777775 788887655554
No 15
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.47 E-value=0.0011 Score=64.52 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=6.8
Q ss_pred eEEEEEecCC
Q 039741 136 RMRLFLFPAG 145 (506)
Q Consensus 136 RLRvFLFp~~ 145 (506)
++.++.+|..
T Consensus 241 ~~~~~~~P~~ 250 (449)
T 3iot_A 241 NYGVTVLPTF 250 (449)
T ss_dssp CEEEECCCEE
T ss_pred ceeEEeCCCC
Confidence 6777777753
No 16
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.35 E-value=0.011 Score=51.77 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=50.6
Q ss_pred cCceeEEEecCCC----ChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHH
Q 039741 64 GGETKILAADRAI----KFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEY 124 (506)
Q Consensus 64 GGETRIVsV~Rsi----SF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEY 124 (506)
|-.+|=|+|..++ +|.||+..+...|...++.|+|+=...| ||.+.+||||..|+.+-
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~eGD---LIrilddeDv~lmi~~s 78 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LVRLLSDEDVALMVRQA 78 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSC---EEECCSHHHHHHHHHHC
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCCCC---EEEEcchHHHHHHHHHh
Confidence 4568889998887 7999999999999888999999955544 99999999999999876
No 17
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=95.81 E-value=0.023 Score=47.90 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=45.1
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHH
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNE 123 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeE 123 (506)
+|--+|.|+-+|+|.+|..||.+-....++.+.+.. +|.+-. .+.+|+||+.-|..
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~yk-de~~g~--~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKL-FDGSGE--EIKTDSQVSNIIQA 76 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECC-SSSCCS--CCCSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEec-CCCCCC--cccCHHHHHHHHHh
Confidence 466789999999999999999998855556666555 665556 99999999998853
No 18
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=83.37 E-value=3 Score=36.31 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=39.9
Q ss_pred CCCChHHHHHHHHhHhC-CCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHh
Q 039741 74 RAIKFASMISKLAALCG-DNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 74 RsiSF~eL~~KLs~l~g-~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl 127 (506)
..++|++|...+...+. .....+.|. +||- --|+|.+||+|+.||.-|-..
T Consensus 35 ~~L~FrDvL~~I~~vmP~aT~TAFeYE--DE~g-DRITVRSDeE~kAMlsyy~~~ 86 (106)
T 2npt_A 35 PQLLFRDVLDVIGQVLPEATTTAFEYE--DEDG-DRITVRSDEEMKAMLSYYYST 86 (106)
T ss_dssp -CCCHHHHHHHHHHHSTTSCCSEEEEE--CTTS-CEEEECSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCccceeeeeeec--cccC-CeeEEcchHHHHHHHHHHHHH
Confidence 67899999999999984 334578885 5553 469999999999999977544
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=69.89 E-value=6.2 Score=28.93 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=30.4
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+...|++..+.|+.+.+..+|+.++++.+|.. ...|-|
T Consensus 6 k~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 44467888899999999999999999998743 355555
No 20
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=67.68 E-value=7.9 Score=33.82 Aligned_cols=75 Identities=17% Similarity=0.354 Sum_probs=39.8
Q ss_pred eeeec--CceeEEEecCCCChHHHHHHHHhHhCCCc-eEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCe
Q 039741 60 LAYIG--GETKILAADRAIKFASMISKLAALCGDND-VSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPAR 136 (506)
Q Consensus 60 LrYVG--GETRIVsV~RsiSF~eL~~KLs~l~g~~d-vsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~R 136 (506)
|||+| |.||||-+.-+ +.+..+|..+.|+..+ -.+.-.+-.+ ..|.-+++|+ ++.+++.+++|.|
T Consensus 3 LrFIacnGQTRaVq~~~~--y~~~L~~ALkKF~ledpskw~Vcvtqs--sr~~~it~e~--------f~~icr~~srPER 70 (110)
T 1k8r_B 3 LRFIACNGQTRAVQSRGD--YQKTLAIALKKFSLEDASKFIVCVSQS--SRIKLITEEE--------FKQICFNSSSPER 70 (110)
T ss_dssp EEEECSTTCEEEEECCSC--HHHHHHHHHHHHTCCCTTSEEEEEECS--SSEEECCCC---------------------C
T ss_pred eEEeecCCceEEeeehhh--HHHHHHHHHHHcCCCChhHeEEEEecC--ceEEEecHhH--------HHHHHhCCCCcch
Confidence 67775 89999987655 5565555555555322 1233334444 5566666653 4566776677899
Q ss_pred EEEEEecCCC
Q 039741 137 MRLFLFPAGT 146 (506)
Q Consensus 137 LRvFLFp~~~ 146 (506)
=||.|.+.++
T Consensus 71 eRLIl~~K~~ 80 (110)
T 1k8r_B 71 DRLIIVPKEK 80 (110)
T ss_dssp CCEEEEESSS
T ss_pred heeEEecCCC
Confidence 9999998876
No 21
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=66.79 E-value=1.3 Score=40.72 Aligned_cols=7 Identities=0% Similarity=0.192 Sum_probs=3.0
Q ss_pred HHHHhHh
Q 039741 83 SKLAALC 89 (506)
Q Consensus 83 ~KLs~l~ 89 (506)
.+|.++.
T Consensus 19 ~~l~~~~ 25 (150)
T 1qb3_A 19 ARVLEFQ 25 (150)
T ss_dssp HHHGGGG
T ss_pred HHHHHHh
Confidence 3354443
No 22
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.74 E-value=1.6 Score=34.61 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=33.9
Q ss_pred hHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHH
Q 039741 78 FASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEY 124 (506)
Q Consensus 78 F~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEY 124 (506)
+.|.-.||..+- -.|+|-+|++|+|.|+--.++++|+.|+.-+
T Consensus 5 LTeVEnRl~qLE----~ll~~lfP~~d~D~ll~~~~l~~ir~~L~~~ 47 (57)
T 1hbw_A 5 LTEVESRLERLE----QLFLLIFPREDLDMILKMDSLRDIEALLTGL 47 (57)
T ss_dssp CHHHHHHHHHHH----HHCSSSSSSSCCCHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHCCcccHHHHHcCCChHHHHHHHHHH
Confidence 345566666663 2478899999999999999999999998654
No 23
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=64.05 E-value=8.7 Score=28.11 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=29.5
Q ss_pred eecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 62 YIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 62 YVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
...|++..+.|+.+.+..+|+.++++..|.. ...|-|
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp CTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 3457788899999999999999999998743 345555
No 24
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=63.18 E-value=7.2 Score=30.63 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=34.5
Q ss_pred eeeecCceeEEE-ecCCCChHHHHHHHHhHhCC--CceEEEEeCCCCCc
Q 039741 60 LAYIGGETKILA-ADRAIKFASMISKLAALCGD--NDVSFKYQLPGEDL 105 (506)
Q Consensus 60 LrYVGGETRIVs-V~RsiSF~eL~~KLs~l~g~--~dvsLKYQLPgEDL 105 (506)
+|..+|. ++|. |+.+.++.+|+.++++..|. ....|.|-.|+..|
T Consensus 5 vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l 52 (86)
T 2kzr_A 5 CKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECL 52 (86)
T ss_dssp EEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCC
T ss_pred EEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCccc
Confidence 5667784 4577 99999999999999998864 34677887676544
No 25
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=62.19 E-value=20 Score=28.76 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=34.5
Q ss_pred hHHHHHHHHhHh-CCCceEEEEeCCCCCcCceeecc--CchHHHHHHHHHHHhhh
Q 039741 78 FASMISKLAALC-GDNDVSFKYQLPGEDLDALISVT--NDDDLEHMMNEYDRLYR 129 (506)
Q Consensus 78 F~eL~~KLs~l~-g~~dvsLKYQLPgEDLDaLISVs--sDEDL~nMmeEYDRl~r 129 (506)
+.++.+.+-+|+ |...+++.| | |.-|.-+ |-+||...|.++.+-..
T Consensus 7 L~~a~~A~~~L~tG~~~vsV~y-----d-gr~V~Y~~asi~~L~~~I~~le~~Lg 55 (68)
T 1hyw_A 7 LAAARAALHDLMTGKRVATVQK-----D-GRRVEFTATSVSDLKKYIAELEVQTG 55 (68)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEC-----S-SCEEEECTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCceEEEEE-----C-CEEEEEecCCHHHHHHHHHHHHHHhc
Confidence 345666667776 777799999 3 5556666 99999999999987653
No 26
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=61.15 E-value=12 Score=27.70 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=27.8
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+|.+..|.|+.+.+..+|+.++++..|.. ...|-|
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 46677789999999999999999998744 345554
No 27
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.61 E-value=20 Score=28.75 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=31.4
Q ss_pred CCeEEEEeecCCEeecCCCCCCeeeecCceeEEEecCCCChHHHHHHHHhHhCCC
Q 039741 38 AYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDN 92 (506)
Q Consensus 38 ~~KVKlmCSyGGrIlPRP~DGkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~ 92 (506)
...|+|.+.++|+. ..|.|+.+.+..+|+.+|++.+|..
T Consensus 15 ~~~~~i~Vk~~g~~----------------~~i~v~~~~TV~~LK~~I~~~tgip 53 (95)
T 1v86_A 15 KELVDLKIIWNKTK----------------HDVKVPLDSTGSELKQKIHSITGLP 53 (95)
T ss_dssp CCCEEEEEEETTEE----------------EEEEECTTSBHHHHHHHHHHHHCSC
T ss_pred CceEEEEEEECCEE----------------EEEEECCCCcHHHHHHHHHHHHCcC
Confidence 45688888777653 4489999999999999999998743
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=56.82 E-value=11 Score=28.29 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.4
Q ss_pred eecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 62 YIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 62 YVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
...|++..|.|+.+.+..+|+.++++.++.. ...|-|
T Consensus 10 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 10 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 3456788899999999999999999998643 345555
No 29
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.31 E-value=12 Score=27.91 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=27.6
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+|++..|.|+.+.+..+|+.++++..|.. ...|-|
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 35566789999999999999999998633 355655
No 30
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=54.62 E-value=16 Score=29.02 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=30.6
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+...|++..|.|+.+.+..+|+.++++..|.. ...|-|
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 44567888899999999999999999998743 355655
No 31
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.66 E-value=17 Score=27.70 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=27.2
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
|.+..|.|+.+.+..+|+.++++..+.. ...|-|
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 5566789999999999999999998633 355555
No 32
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=52.40 E-value=13 Score=34.28 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=42.1
Q ss_pred EEEEeecCCEeecCCCCC-----CeeeecCceeEEEecCCCChHHHHHHHHhHhCCC
Q 039741 41 AKFMCSYGGKIHPRPHDN-----QLAYIGGETKILAADRAIKFASMISKLAALCGDN 92 (506)
Q Consensus 41 VKlmCSyGGrIlPRP~DG-----kLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~ 92 (506)
-|++||-.|.|..- .|. .++-..|.+..|.|+.+.+..+|+.+|++..|..
T Consensus 87 ~r~~~s~dg~~y~T-~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp 142 (189)
T 3q3f_A 87 DRILYSSDWLIYKT-TDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 142 (189)
T ss_dssp CEEEEETTCCEEEE-SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred cceEecCCCcEEEc-ccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC
Confidence 48899999998853 354 3555689999999999999999999999998743
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=52.02 E-value=18 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=30.8
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++...|.+..|.|+.+.+..+|+.++++.+|.. ...|-|
T Consensus 6 vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 6 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 345577888899999999999999999998743 344544
No 34
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=51.86 E-value=25 Score=27.40 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=27.7
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|.+..|.|+.+.+..+|+.+|++..|.. ...|-|
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 46677899999999999999999998743 344544
No 35
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=51.02 E-value=19 Score=27.77 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=30.4
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+...|.+..|.|+.+.+..+|+.+|.+.+|.. ...|-|
T Consensus 11 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 11 KTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 44568888899999999999999999998743 345555
No 36
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=49.91 E-value=21 Score=26.79 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=30.1
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+..+|.+..|.|+.+.+..+|+.++++..|.. ...|-|
T Consensus 10 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 10 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 34467888899999999999999999998743 345555
No 37
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=49.38 E-value=19 Score=27.06 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=30.2
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+...|++..|.|+.+.+..+|+.++++.++.. ...|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 9 KTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 34467888899999999999999999998643 355555
No 38
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=48.53 E-value=38 Score=33.95 Aligned_cols=80 Identities=21% Similarity=0.431 Sum_probs=53.3
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCCc-eEEE------EeCCCCCcCceee------ccCchHHHHHHHHHHHhhhc
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDND-VSFK------YQLPGEDLDALIS------VTNDDDLEHMMNEYDRLYRA 130 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~d-vsLK------YQLPgEDLDaLIS------VssDEDL~nMmeEYDRl~r~ 130 (506)
-|-.+|++|+.+ ...+...++.+.-|..+ +++- ..|| |..|.+|| +.....|..+++..+|+...
T Consensus 104 aGA~~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp 181 (376)
T 4hc4_A 104 AGARRVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKE 181 (376)
T ss_dssp TTCSEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEE
T ss_pred hCCCEEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCC
Confidence 366799999988 46677777766655332 3332 3456 56888998 44555888888888888643
Q ss_pred CC--CCCeEEEEEecCC
Q 039741 131 SA--KPARMRLFLFPAG 145 (506)
Q Consensus 131 s~--~p~RLRvFLFp~~ 145 (506)
.. =|.+.++|+.|..
T Consensus 182 ~G~~iP~~atly~apie 198 (376)
T 4hc4_A 182 GGLLLPASAELFIVPIS 198 (376)
T ss_dssp EEEEESCEEEEEEEEEC
T ss_pred CceECCccceEEEEEec
Confidence 22 2567788887654
No 39
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=44.13 E-value=22 Score=28.39 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=27.6
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|++..|.|+.+.+..+|+.+|++.++.. ...|-|
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 45677789999999999999999998743 345555
No 40
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=43.66 E-value=30 Score=26.56 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=30.5
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++..+|.+..|.|+.+.+..+|+.++++.+|.. ...|-|
T Consensus 22 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 22 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 345567888899999999999999999998743 344544
No 41
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=43.40 E-value=32 Score=27.07 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=29.4
Q ss_pred eecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 62 YIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 62 YVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
...|++.-|.|+.+.+..+|+.+|++..|.. ...|-|
T Consensus 17 ~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 17 NLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp ETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 3457888899999999999999999998743 344544
No 42
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=42.50 E-value=73 Score=30.52 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=45.1
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCCc-eEEEE------eCCCCCcCceee------ccCchHHHHHHHHHHHhhh
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDND-VSFKY------QLPGEDLDALIS------VTNDDDLEHMMNEYDRLYR 129 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~d-vsLKY------QLPgEDLDaLIS------VssDEDL~nMmeEYDRl~r 129 (506)
|..+|+.|+.+ ..-++..+..+..+..+ +.+.- .+|.+..|.+|+ +...+++..++++..|+.+
T Consensus 88 g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lk 164 (349)
T 3q7e_A 88 GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA 164 (349)
T ss_dssp TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEE
T ss_pred CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCC
Confidence 56799999999 56667666666544332 33322 467777899888 3566899999999888764
No 43
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=40.90 E-value=28 Score=27.27 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=29.6
Q ss_pred eecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 62 YIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 62 YVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
-..|++..|.|+.+.+..+|+.++++..|.. ...|-|
T Consensus 16 ~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 16 TLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp ETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 3457788899999999999999999998743 355555
No 44
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=40.19 E-value=43 Score=26.23 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=28.2
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCC--CceEEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGD--NDVSFKY 98 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~--~dvsLKY 98 (506)
.+|++..|.|+.+.+..+|+.+|++..|. ....|-|
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 35666778999999999999999999863 2355655
No 45
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=38.77 E-value=14 Score=29.34 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEeCCC
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQLPG 102 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQLPg 102 (506)
-.|-.| |.|+.+.+|.+|..|+++.++.. .++|++-.|.
T Consensus 12 ~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p 52 (80)
T 2pjh_A 12 PDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK 52 (80)
T ss_dssp SSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG
T ss_pred CCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC
Confidence 446444 56999999999999999998632 4667777665
No 46
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=38.60 E-value=38 Score=25.39 Aligned_cols=36 Identities=6% Similarity=0.084 Sum_probs=28.8
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
..|.+..+.|.++.++.+|+.++++..|.. ...|-|
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 457778899999999999999999988743 345555
No 47
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=38.13 E-value=79 Score=25.98 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=30.8
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++...|++..+.|+.+.+..+|+.++++..|.. ...|-|
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~ 121 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE
Confidence 345568899999999999999999999988643 345555
No 48
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=37.90 E-value=26 Score=26.57 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=27.5
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|.+..|.|+.+.+..+|+.++++.+|.. ...|-|
T Consensus 21 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 45677889999999999999999998643 244444
No 49
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=37.30 E-value=33 Score=26.74 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=28.0
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|++.-|.|+.+.+..+|+.++.+.+|.. ...|-|
T Consensus 26 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 26 TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 46677899999999999999999998743 345555
No 50
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.65 E-value=44 Score=25.59 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=26.0
Q ss_pred ceeEE-EecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 66 ETKIL-AADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 66 ETRIV-sV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++..| .|+.+.+..+|+.+|++..|.. ...|-|
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 46678 5999999999999999998633 455655
No 51
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=36.31 E-value=43 Score=27.55 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=27.7
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|.+..|.|+.+.+..+|+.+|++.++.. ...|-|
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 45677789999999999999999998754 344444
No 52
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=35.89 E-value=42 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=27.4
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
|.+..|.|+.+.+..+|+.++++..+.. ...|-|
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 5667899999999999999999998643 455655
No 53
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=35.81 E-value=41 Score=26.89 Aligned_cols=35 Identities=6% Similarity=0.104 Sum_probs=28.0
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|.+..|.|.++.++.+|+.++++..|.. ...|-|
T Consensus 30 ~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 30 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 46677899999999999999999998744 345555
No 54
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=35.54 E-value=53 Score=24.72 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=27.4
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhH---hCC--CceEEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAAL---CGD--NDVSFKY 98 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l---~g~--~dvsLKY 98 (506)
.+|.+..|.|+.+.+..+|+.++++. .|. ....|-|
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 34667788999999999999999997 332 3455555
No 55
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=35.03 E-value=44 Score=27.76 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=31.5
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++-..|.+..|.|+.+.+..+|+.+|++..|.. ...|-|
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 345678889999999999999999999998743 355555
No 56
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.17 E-value=27 Score=28.40 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCeEEEEeecCCEeecCCCCCCeeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 37 QAYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 37 ~~~KVKlmCSyGGrIlPRP~DGkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.+..|++.+.. .+|.+..|.|+.+.+..+|+.+|++..|.. ...|-|
T Consensus 20 ~~~~m~I~Vk~---------------~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 20 SGYECQLRLRL---------------STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp -CCSEEEEEEE---------------TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred CCCeEEEEEEc---------------CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 45667777643 124455689999999999999999998632 355555
No 57
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.38 E-value=57 Score=26.25 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=27.5
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|++..|.|+.+.+..+|+.+|++.+|.. ...|-|
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 35677799999999999999999998743 344444
No 58
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=33.09 E-value=1.4e+02 Score=24.75 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=53.3
Q ss_pred eEEEecCCCChHHHHHHHHhHhCCCceEEE---EeCC---------CCCc-------CceeeccCchHHHHHHHHHHHhh
Q 039741 68 KILAADRAIKFASMISKLAALCGDNDVSFK---YQLP---------GEDL-------DALISVTNDDDLEHMMNEYDRLY 128 (506)
Q Consensus 68 RIVsV~RsiSF~eL~~KLs~l~g~~dvsLK---YQLP---------gEDL-------DaLISVssDEDL~nMmeEYDRl~ 128 (506)
.|++|=|...+.+++..|.+. |...+++- =..- +.++ ..|..|..||+++..++.-.+..
T Consensus 3 ~I~aII~~~~~~~V~~aL~~~-G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~ 81 (116)
T 1vfj_A 3 LIVAIVRPEKLNEVLKALFQA-EVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAA 81 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHT-TCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHhC-CCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHh
Confidence 688888999999999999987 43323322 1110 1112 25788889999999998887766
Q ss_pred hcCCCCCeEEEEEecCCC
Q 039741 129 RASAKPARMRLFLFPAGT 146 (506)
Q Consensus 129 r~s~~p~RLRvFLFp~~~ 146 (506)
+. .+++-=++|+.|...
T Consensus 82 ~t-g~~GdGkiFV~pVe~ 98 (116)
T 1vfj_A 82 RT-GEVGDGKIFVLPVEK 98 (116)
T ss_dssp CC-SSTTCCEEEEEECSE
T ss_pred cC-CCCCCEEEEEEEhHH
Confidence 42 345566999999875
No 59
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=32.41 E-value=61 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=26.6
Q ss_pred cCce-eEEE-ecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 64 GGET-KILA-ADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 64 GGET-RIVs-V~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|.+ ..|. |+.+.+..+|+.++++..|.. ...|-|
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 3555 3688 999999999999999998743 345555
No 60
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.06 E-value=80 Score=24.55 Aligned_cols=33 Identities=6% Similarity=0.044 Sum_probs=24.7
Q ss_pred eeEEEecCC-----CChHHHHHHHHhHhCC--CceEEEEe
Q 039741 67 TKILAADRA-----IKFASMISKLAALCGD--NDVSFKYQ 99 (506)
Q Consensus 67 TRIVsV~Rs-----iSF~eL~~KLs~l~g~--~dvsLKYQ 99 (506)
+..|.|+.+ .+..+|+.+|++.+|. ....|-|.
T Consensus 18 ~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 18 KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 445788885 9999999999999863 23556553
No 61
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=31.73 E-value=47 Score=25.95 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=30.2
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+-..|.+..|.|+.+.+..+|+.++++.+|.. ...|-|
T Consensus 6 k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 44568888999999999999999999998743 345555
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=31.05 E-value=40 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=22.7
Q ss_pred CceeEE-EecCCCChHHHHHHHHhHhCC
Q 039741 65 GETKIL-AADRAIKFASMISKLAALCGD 91 (506)
Q Consensus 65 GETRIV-sV~RsiSF~eL~~KLs~l~g~ 91 (506)
|.+..| .|+.+.++.+|+.+|++..|.
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gi 43 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGV 43 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCc
Confidence 445557 899999999999999999874
No 63
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.82 E-value=34 Score=27.92 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=31.2
Q ss_pred eeeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 60 LAYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 60 LrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
++..+|.+..|.|+.+.+..+|+.+|.+.+|.. ...|-|
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 455678899999999999999999999998743 345555
No 64
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.73 E-value=39 Score=26.97 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=28.7
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
.|+..-+.++.+++..+|+.||++++|.. ...|-|.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 45666688999999999999999999743 4566665
No 65
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.86 E-value=63 Score=26.02 Aligned_cols=27 Identities=19% Similarity=0.023 Sum_probs=22.3
Q ss_pred Ccee-EEEecCCCChHHHHHHHHhHhCC
Q 039741 65 GETK-ILAADRAIKFASMISKLAALCGD 91 (506)
Q Consensus 65 GETR-IVsV~RsiSF~eL~~KLs~l~g~ 91 (506)
|++. .|.|+.+.++.+|+.+|++..|.
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgi 43 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGV 43 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCC
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 4455 38899999999999999999863
No 66
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.59 E-value=50 Score=25.90 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=27.3
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCCceEEEEe
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDNDVSFKYQ 99 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQ 99 (506)
|.+..|.|+.+.+..+|+.+|.+.. .....|-|.
T Consensus 17 g~~~~~~v~~~~TV~~LK~~i~~~~-~~~qrLi~~ 50 (95)
T 1wia_A 17 DTEELAVARPEDTVGTLKSKYFPGQ-ESQMKLIYQ 50 (95)
T ss_dssp TEEEEEEECSSSBHHHHHHHHSSST-TTTCEEEET
T ss_pred CCEEEEEECCCCcHHHHHHHHHhhC-cCcEEEEEC
Confidence 4566789999999999999999887 555667663
No 67
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=28.41 E-value=72 Score=25.75 Aligned_cols=32 Identities=3% Similarity=0.102 Sum_probs=25.2
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 67 TKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+..|.|+.+.+..+|+.+|++.+|.. ...|-|
T Consensus 36 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 36 KEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 34679999999999999999998743 345555
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=28.41 E-value=85 Score=27.12 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=30.0
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+-..|.+..+.|+.+.+..+|+.++.+.+|.. ...|.|
T Consensus 102 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 141 (172)
T 3u30_A 102 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 141 (172)
T ss_dssp EESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred ecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE
Confidence 34568899999999999999999999998743 344555
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=28.22 E-value=68 Score=26.39 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.5
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
..|.+.-|.|+.+.+..+|+.++++.+|.. ...|-|
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~ 45 (152)
T 3b08_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 357778899999999999999999998743 344555
No 70
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=27.97 E-value=1.7e+02 Score=24.92 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=50.9
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCCceEEE---EeCC---------CC----C---cCceeeccCchHHHHHHHHHHHh
Q 039741 67 TKILAADRAIKFASMISKLAALCGDNDVSFK---YQLP---------GE----D---LDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~dvsLK---YQLP---------gE----D---LDaLISVssDEDL~nMmeEYDRl 127 (506)
..|++|=|..++.+++..|.++ |...+++- =+.= +. | ...|.-|.+||+++..++--.+.
T Consensus 2 K~I~AIIrp~kl~~Vk~AL~~~-G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~ 80 (118)
T 3t9z_A 2 KMVVAVIRPEKLECVKKALEER-GFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSS 80 (118)
T ss_dssp EEEEEEECGGGHHHHHHHHHHT-TCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEEECHHHHHHHHHHHHHC-CCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHH
Confidence 3688888999999999999986 43333321 1110 00 1 13567777899999999877665
Q ss_pred hhcCCCCCeEEEEEecCCC
Q 039741 128 YRASAKPARMRLFLFPAGT 146 (506)
Q Consensus 128 ~r~s~~p~RLRvFLFp~~~ 146 (506)
.+. .+.+-=++|+.|..+
T Consensus 81 a~T-G~~GDGkIFV~~Ve~ 98 (118)
T 3t9z_A 81 ART-GKFGDGRIFVIPVEK 98 (118)
T ss_dssp HCC-SSTTCCEEEEEECCE
T ss_pred hcC-CCCCCeEEEEEEhHH
Confidence 542 334445789998875
No 71
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=27.15 E-value=53 Score=26.01 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=27.2
Q ss_pred CceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 65 GETKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 65 GETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
|.+..|.|+.+.+..+|+.+|++..|.. ...|-|.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 3456789999999999999999998743 3555553
No 72
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=26.40 E-value=38 Score=31.53 Aligned_cols=25 Identities=40% Similarity=0.719 Sum_probs=20.4
Q ss_pred CCcCceeeccCchHHHHHHHHHHHh
Q 039741 103 EDLDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 103 EDLDaLISVssDEDL~nMmeEYDRl 127 (506)
.|||++|-|.+|||+...---||.|
T Consensus 104 sdldafvivkndedikkvkpvfdal 128 (213)
T 3nku_A 104 SDLDAFVIVKNDEDIKKVKPVFDAL 128 (213)
T ss_dssp CCCEEEEECSSTHHHHHHHHHHHHH
T ss_pred cccceEEEecchhhhhhhhhHHHHH
Confidence 6899999999999998875555544
No 73
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=26.28 E-value=66 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.7
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 67 TKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
+..|.|+.+.+..+|+.+|++..|.. ...|-|
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 66789999999999999999998643 345554
No 74
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=26.25 E-value=2.9e+02 Score=23.35 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=46.3
Q ss_pred cCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEe-----CCC-CCcCceeeccCchHHHHHHHHHHHhhh
Q 039741 64 GGETKILAADRAIKFASMISKLAALCGDNDVSFKYQ-----LPG-EDLDALISVTNDDDLEHMMNEYDRLYR 129 (506)
Q Consensus 64 GGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQ-----LPg-EDLDaLISVssDEDL~nMmeEYDRl~r 129 (506)
++..+|+.|+.+-..-++..+..+..+...+.+... ++. +..|.+++-...+++..++++..++.+
T Consensus 62 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~Lk 133 (204)
T 3e05_A 62 MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLK 133 (204)
T ss_dssp CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTTCHHHHHHHHHHHCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 567899999999888777777766655443444331 121 447888877777899999999877654
No 75
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=26.15 E-value=2.4e+02 Score=24.09 Aligned_cols=78 Identities=23% Similarity=0.246 Sum_probs=52.1
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCCceEEE---EeCC---------CCC-------cCceeeccCchHHHHHHHHHHHh
Q 039741 67 TKILAADRAIKFASMISKLAALCGDNDVSFK---YQLP---------GED-------LDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~dvsLK---YQLP---------gED-------LDaLISVssDEDL~nMmeEYDRl 127 (506)
.+|++|=|..++.+++..|.++ |...+++- =+.= +.+ ...|.-|.+||+++..++--.+.
T Consensus 2 K~I~AIIrp~kl~~Vk~AL~~~-G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~ 80 (119)
T 3ncq_A 2 KKIEAIVRAEKFPEVKAALEER-GFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNS 80 (119)
T ss_dssp EEEEEEECTTTHHHHHHHHHHT-TCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEEECHHHHHHHHHHHHHC-CCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHH
Confidence 3688899999999999999996 44333331 1111 101 13467777899999999877665
Q ss_pred hhcCCCCCeEEEEEecCCC
Q 039741 128 YRASAKPARMRLFLFPAGT 146 (506)
Q Consensus 128 ~r~s~~p~RLRvFLFp~~~ 146 (506)
.+. .+.+-=++|+.|..+
T Consensus 81 a~T-G~~GDGkIFV~~Ve~ 98 (119)
T 3ncq_A 81 AFT-GSPGDGKIFIIPVED 98 (119)
T ss_dssp HCC-SSTTCCEEEEEECSE
T ss_pred hcC-CCCCCCEEEEEEhHh
Confidence 542 334445789999876
No 76
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=31.62 E-value=15 Score=27.35 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=26.3
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCC
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGD 91 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~ 91 (506)
+...|++..|.|+.+.+..+|+.++++..|.
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 36 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQGV 36 (76)
Confidence 3456788889999999999999999998764
No 77
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=25.02 E-value=77 Score=27.39 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.5
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.+|.+..|.|+.+.+..+|+.++.+..|.. ...|-|
T Consensus 28 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~ 65 (172)
T 3u30_A 28 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65 (172)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 356677899999999999999999998743 345555
No 78
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.93 E-value=85 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=28.3
Q ss_pred eecCceeEEEecCCCChHHHHHHHHhH---hC--CCceEEEE
Q 039741 62 YIGGETKILAADRAIKFASMISKLAAL---CG--DNDVSFKY 98 (506)
Q Consensus 62 YVGGETRIVsV~RsiSF~eL~~KLs~l---~g--~~dvsLKY 98 (506)
-..|++..|.|+.+.+..+|+.+|++. .| .....|-|
T Consensus 7 ~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 7 TLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp ETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred eCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 345777789999999999999999998 33 23455555
No 79
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.43 E-value=79 Score=25.45 Aligned_cols=31 Identities=0% Similarity=0.108 Sum_probs=24.7
Q ss_pred EEEecCCCChHHHHHHHHhHhCC--CceEEEEe
Q 039741 69 ILAADRAIKFASMISKLAALCGD--NDVSFKYQ 99 (506)
Q Consensus 69 IVsV~RsiSF~eL~~KLs~l~g~--~dvsLKYQ 99 (506)
.|.|+.+.+..+|+.+|++.+|. ....|-|.
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 57899999999999999999863 34566553
No 80
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=23.83 E-value=1.1e+02 Score=26.57 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=49.3
Q ss_pred EeecCCCCCCeeeecCce--eEEEecCCCChHHHHHHHHhHhCCCceEE---------------EEeCCCCCcCc-eeec
Q 039741 50 KIHPRPHDNQLAYIGGET--KILAADRAIKFASMISKLAALCGDNDVSF---------------KYQLPGEDLDA-LISV 111 (506)
Q Consensus 50 rIlPRP~DGkLrYVGGET--RIVsV~RsiSF~eL~~KLs~l~g~~dvsL---------------KYQLPgEDLDa-LISV 111 (506)
||.-..|...|.|-|-.+ .|.+|=|..++.+++..|.++-|...+++ +=+.-|-.-.. |--|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~lI~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEiv 84 (120)
T 3ce8_A 5 KIHHHHHHENLYFQGMSTEQLLVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIM 84 (120)
T ss_dssp ---------------CCSEEEEEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEE
T ss_pred cccccccccceeecCCccceEEEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEE
Confidence 344334455677777654 46788899999999999999833222222 21222222233 4445
Q ss_pred cCchHHHHHHHHHHHhhhcCCCCCeEEEEEecCCC
Q 039741 112 TNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAGT 146 (506)
Q Consensus 112 ssDEDL~nMmeEYDRl~r~s~~p~RLRvFLFp~~~ 146 (506)
.+|++++.+++.--+.. ..+++++|+.|..+
T Consensus 85 v~d~~ve~vv~aI~~~a----~tg~IKIfV~pVe~ 115 (120)
T 3ce8_A 85 HPAAQQAALLTALALVC----KHNPCRYWIMPIYQ 115 (120)
T ss_dssp EEGGGHHHHHHHHHHHT----TTSCCEEEEEECSC
T ss_pred ECHHHHHHHHHHHHHHc----CCCCEEEEEEEhHH
Confidence 67889999997765543 34678999999864
No 81
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.46 E-value=3.3e+02 Score=22.90 Aligned_cols=33 Identities=3% Similarity=0.076 Sum_probs=25.7
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCC--ceEEEEe
Q 039741 67 TKILAADRAIKFASMISKLAALCGDN--DVSFKYQ 99 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKYQ 99 (506)
+..|.|+.+.+..+|+.+|.+.+|.. ...|-|.
T Consensus 43 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 43 KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 45678999999999999999998633 3555553
No 82
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.09 E-value=59 Score=25.44 Aligned_cols=25 Identities=0% Similarity=-0.097 Sum_probs=21.6
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCC
Q 039741 67 TKILAADRAIKFASMISKLAALCGD 91 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~ 91 (506)
+..|.|+.+.+..+|+.+|++..+.
T Consensus 28 ~~~~~v~~~~TV~~LK~~I~~~~gi 52 (96)
T 1wx8_A 28 CHEFFLAENSNVRRFKKQISKYLHC 52 (96)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHTCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCC
Confidence 4467899999999999999999863
No 83
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=22.52 E-value=2.8e+02 Score=23.62 Aligned_cols=74 Identities=8% Similarity=0.119 Sum_probs=48.3
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCC------------CcCceeeccCchHHHHHHHHHHHhhhcCCCC
Q 039741 67 TKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGE------------DLDALISVTNDDDLEHMMNEYDRLYRASAKP 134 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgE------------DLDaLISVssDEDL~nMmeEYDRl~r~s~~p 134 (506)
.+|.+|=|...+.+++..|.++ |..-+++ ...=|. ..-.|.-|.+||+++..++.-.+-.+. ...
T Consensus 26 K~I~aIIr~~k~e~V~~aL~~~-Gi~G~TV-~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t-g~~ 102 (119)
T 2cz4_A 26 KLVTIVAESLLEKRLVEEVKRL-GAKGYTI-TPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP-HYA 102 (119)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHT-TCCCCEE-EEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT-TSC
T ss_pred EEEEEEECHHHHHHHHHHHHhC-CCCcEEE-cCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC-CCC
Confidence 4676777888999999999887 5444555 222221 123577788999999999887643221 122
Q ss_pred CeEEEEEecCC
Q 039741 135 ARMRLFLFPAG 145 (506)
Q Consensus 135 ~RLRvFLFp~~ 145 (506)
-++|+.+..
T Consensus 103 --GkIFV~~Ve 111 (119)
T 2cz4_A 103 --VIAYVENVW 111 (119)
T ss_dssp --CEEEEEEEE
T ss_pred --EEEEEEEeE
Confidence 578888753
No 84
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=22.50 E-value=73 Score=26.17 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=30.1
Q ss_pred ecCceeEEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 63 IGGETKILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
..|.+..|.|+.+.+..+|+.+|++.+|.. ...|-|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 478899999999999999999999998743 456666
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=22.34 E-value=1.3e+02 Score=25.38 Aligned_cols=37 Identities=5% Similarity=0.180 Sum_probs=29.9
Q ss_pred eeecCceeEEEecCCCChHHHHHHHHhHhCCCc--eEEE
Q 039741 61 AYIGGETKILAADRAIKFASMISKLAALCGDND--VSFK 97 (506)
Q Consensus 61 rYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~d--vsLK 97 (506)
+-.+|.+..|.|+.+.+..+|+.++.+..|... -.|-
T Consensus 8 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~ 46 (159)
T 3rt3_B 8 KMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLA 46 (159)
T ss_dssp EETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 345788899999999999999999999987543 3444
No 86
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=22.11 E-value=3.3e+02 Score=22.30 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=50.7
Q ss_pred eEEEecCCCChHHHHHHHHhHhCCCceEEEE------eC------CCCC-------cCceeeccCchHHHHHHHHHHHhh
Q 039741 68 KILAADRAIKFASMISKLAALCGDNDVSFKY------QL------PGED-------LDALISVTNDDDLEHMMNEYDRLY 128 (506)
Q Consensus 68 RIVsV~RsiSF~eL~~KLs~l~g~~dvsLKY------QL------PgED-------LDaLISVssDEDL~nMmeEYDRl~ 128 (506)
.|++|=|...+.+++..|.+. |...+++-- |+ =+.+ ...|.-|..||+++..++.-.+..
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~-G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~ 81 (112)
T 2eg2_A 3 KIEAIIKPFKLDEVKDALVEI-GIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTA 81 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHT-TCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHC-CCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHh
Confidence 688888999999999999987 332222210 00 0111 125667778999999998877665
Q ss_pred hcCCCCCeEEEEEecCCCC
Q 039741 129 RASAKPARMRLFLFPAGTT 147 (506)
Q Consensus 129 r~s~~p~RLRvFLFp~~~~ 147 (506)
+. .+++-=++|+.|..+.
T Consensus 82 ~t-g~~GdGkiFV~pVe~~ 99 (112)
T 2eg2_A 82 QT-GRVGDGKIFIIPVEDV 99 (112)
T ss_dssp CC-SSTTCCEEEEEECSCC
T ss_pred cC-CCCCCEEEEEEEhHhE
Confidence 42 2344568999998753
No 87
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=20.91 E-value=2.9e+02 Score=22.52 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=51.3
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCCceEEE-------------------EeCCCCCcCceeeccCchHHHHHHHHHHHh
Q 039741 67 TKILAADRAIKFASMISKLAALCGDNDVSFK-------------------YQLPGEDLDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~dvsLK-------------------YQLPgEDLDaLISVssDEDL~nMmeEYDRl 127 (506)
.+|++|=|...+.+++..|.+. |...+++- |.+--.....|.-|..||+++..++.-.+.
T Consensus 2 k~I~aII~~~~~~~v~~aL~~~-G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~ 80 (112)
T 1hwu_A 2 KQVTAIIKPFKLDEVRESLAEV-GVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKA 80 (112)
T ss_dssp EEEEEEECGGGHHHHHHHHHHT-TCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHC-CCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHH
Confidence 3688888999999999999986 33222221 110000113566677899999999887766
Q ss_pred hhcCCCCCeEEEEEecCCC
Q 039741 128 YRASAKPARMRLFLFPAGT 146 (506)
Q Consensus 128 ~r~s~~p~RLRvFLFp~~~ 146 (506)
.+. .+++-=++|+.|...
T Consensus 81 ~~t-g~~GdGkiFV~~V~~ 98 (112)
T 1hwu_A 81 ART-GKIGDGKIFVQEVEQ 98 (112)
T ss_dssp HCC-SSTTCCEEEEEECSE
T ss_pred hcC-CCCCCEEEEEEEhHH
Confidence 542 344556899999875
No 88
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=20.55 E-value=1e+02 Score=24.91 Aligned_cols=30 Identities=0% Similarity=0.102 Sum_probs=24.2
Q ss_pred EEEecCCCChHHHHHHHHhHhCCC--ceEEEE
Q 039741 69 ILAADRAIKFASMISKLAALCGDN--DVSFKY 98 (506)
Q Consensus 69 IVsV~RsiSF~eL~~KLs~l~g~~--dvsLKY 98 (506)
.|.|+.+.+..+|+.+|++.+|.. ...|-|
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 578999999999999999998743 345555
No 89
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=20.43 E-value=2.4e+02 Score=23.15 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=50.8
Q ss_pred eeEEEecCCCChHHHHHHHHhHhCCCceEEE---EeC---------CCCC-------cCceeeccCchHHHHHHHHHHHh
Q 039741 67 TKILAADRAIKFASMISKLAALCGDNDVSFK---YQL---------PGED-------LDALISVTNDDDLEHMMNEYDRL 127 (506)
Q Consensus 67 TRIVsV~RsiSF~eL~~KLs~l~g~~dvsLK---YQL---------PgED-------LDaLISVssDEDL~nMmeEYDRl 127 (506)
.+|++|=|...+.+++..|.+. |...+++- =+. -+.+ ...|.-|..||+++..++.-.+.
T Consensus 4 k~I~aIIr~~~~~~v~~aL~~~-G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~ 82 (114)
T 3bzq_A 4 KLITAIVKPFTLDDVKTSLEDA-GVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRA 82 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHT-TCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHC-CCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHH
Confidence 4678888999999999999987 32222221 000 0111 12466677899999999887766
Q ss_pred hhcCCCCCeEEEEEecCCC
Q 039741 128 YRASAKPARMRLFLFPAGT 146 (506)
Q Consensus 128 ~r~s~~p~RLRvFLFp~~~ 146 (506)
.+. .+++-=++|+.|...
T Consensus 83 ~~t-g~~GdGkiFV~pVe~ 100 (114)
T 3bzq_A 83 ART-GKIGDGKVWVSPVDT 100 (114)
T ss_dssp HCC-SSTTCCEEEEEEESC
T ss_pred hcC-CCCCCEEEEEEEhHH
Confidence 542 345556899999875
Done!