BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039742
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
 pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
          Length = 609

 Score = 29.3 bits (64), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 1   MEKGKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLT 39
           ++KGKG+   FV   + TPGG+L + +     + + F T
Sbjct: 146 LDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKT 184


>pdb|3VMN|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
 pdb|3VMO|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
           In Complex With Isomaltotriose
 pdb|3VMP|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
           In Complex With 4,5-Epoxypentyl Alpha-D-Glucopyranoside
          Length = 643

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 23  LDKAIDAEDAEHQDFLTLNHVSMLVNSLANHKSKPRIYIGCMKSGPVLSQKGVKYHEPEY 82
           + K ++ ++  +Q F+T  + ++L + + N  ++P+ +     +G  LSQ  +  +  + 
Sbjct: 471 VSKELNRKNYHYQQFITA-YENLLRDKVENDSAEPQTFTA---NGRQLSQDALGINGDQV 526

Query: 83  WKFGEEGNKY 92
           W + ++GN +
Sbjct: 527 WTYAKKGNDF 536


>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
           P85alpha And The Inhibitor Pik-108
          Length = 1096

 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 139 KAKAGNACVASFDWSCSGICKSVERMKIG--HNS--CGEGDGAVWNVDF 183
           K +  +A +  F  SC+G C +   + IG  HNS    + DG ++++DF
Sbjct: 914 KGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDF 962


>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
           With Nish2 Of P85alpha And The Drug Wortmannin
          Length = 1091

 Score = 26.6 bits (57), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 139 KAKAGNACVASFDWSCSGICKSVERMKIG--HNS--CGEGDGAVWNVDF 183
           K +  +A +  F  SC+G C +   + IG  HNS    + DG ++++DF
Sbjct: 909 KGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDF 957


>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
          Length = 1096

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 139 KAKAGNACVASFDWSCSGICKSVERMKIG--HNS--CGEGDGAVWNVDF 183
           K +  +A +  F  SC+G C +   + IG  HNS    + DG ++++DF
Sbjct: 914 KGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDF 962


>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
           With Nish2 Of P85alpha
          Length = 1096

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 139 KAKAGNACVASFDWSCSGICKSVERMKIG--HNS--CGEGDGAVWNVDF 183
           K +  +A +  F  SC+G C +   + IG  HNS    + DG ++++DF
Sbjct: 914 KGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDF 962


>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
           Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
          Length = 940

 Score = 26.6 bits (57), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 139 KAKAGNACVASFDWSCSGICKSVERMKIG--HNS--CGEGDGAVWNVDF 183
           K +  +A +  F  SC+G C +   + IG  HNS    + DG ++++DF
Sbjct: 780 KGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDF 828


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,116,111
Number of Sequences: 62578
Number of extensions: 245378
Number of successful extensions: 613
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 7
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)