Query 039742
Match_columns 183
No_of_seqs 172 out of 312
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 3.1E-61 6.7E-66 433.7 16.8 183 1-183 172-408 (408)
2 KOG2288 Galactosyltransferases 100.0 1.2E-58 2.6E-63 394.6 13.7 180 1-183 44-273 (274)
3 PLN03133 beta-1,3-galactosyltr 99.9 8.3E-27 1.8E-31 220.5 11.3 120 5-129 417-576 (636)
4 PF01762 Galactosyl_T: Galacto 99.9 3.3E-26 7.3E-31 186.2 10.2 123 4-129 18-181 (195)
5 KOG2287 Galactosyltransferases 99.9 1.2E-24 2.5E-29 193.7 11.3 121 5-129 127-287 (349)
6 PTZ00210 UDP-GlcNAc-dependent 99.5 1.9E-14 4.1E-19 129.4 6.9 151 6-176 121-360 (382)
7 PF02434 Fringe: Fringe-like; 97.2 0.00044 9.5E-09 59.3 4.7 87 35-129 87-188 (252)
8 PLN03153 hypothetical protein; 83.9 3.6 7.7E-05 39.5 6.9 76 37-129 214-299 (537)
9 KOG2246 Galactosyltransferases 75.7 5.1 0.00011 36.5 4.9 65 44-129 184-255 (364)
10 TIGR00757 RNaseEG ribonuclease 40.5 59 0.0013 30.2 5.2 16 94-109 394-409 (414)
11 PF08576 DUF1764: Eukaryotic p 31.6 15 0.00033 27.3 -0.1 21 117-137 72-99 (102)
12 PF01755 Glyco_transf_25: Glyc 30.5 60 0.0013 25.7 3.3 22 96-117 170-191 (200)
13 PRK11712 ribonuclease G; Provi 26.8 98 0.0021 29.5 4.4 17 93-109 405-421 (489)
14 PRK10811 rne ribonuclease E; R 26.4 82 0.0018 32.8 4.0 17 93-109 404-420 (1068)
15 KOG1663 O-methyltransferase [S 21.6 70 0.0015 27.8 2.2 33 8-43 126-158 (237)
16 COG3001 Uncharacterized protei 21.6 1.1E+02 0.0023 27.3 3.3 46 33-81 165-219 (286)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.1e-61 Score=433.66 Aligned_cols=183 Identities=69% Similarity=1.240 Sum_probs=172.4
Q ss_pred CCCCCCeEEEEEeecCCCCChhHHHHHHHHHHhcCCEEeecch-------------------------------------
Q 039742 1 MEKGKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLTLNHV------------------------------------- 43 (183)
Q Consensus 1 le~~~gv~~rFvIG~s~~~~~~ld~~L~~E~~~ygDiL~ld~~------------------------------------- 43 (183)
||+++|+++|||||+++++.+++|++|++|+++|||||++||+
T Consensus 172 le~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv 251 (408)
T PLN03193 172 LEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNI 251 (408)
T ss_pred cccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcH
Confidence 5678999999999999876677999999999999999999987
Q ss_pred hhHHHHHHccCCCCceEEEeecCCccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHHHHHHhhCCcCCCCCC
Q 039742 44 SMLVNSLANHKSKPRIYIGCMKSGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLAAYISINLPILHRYAN 123 (183)
Q Consensus 44 ~~L~~~L~~~~~~~rlY~G~~~~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla~~I~~n~~~l~~y~~ 123 (183)
++|+++|++++.++++|+|||+++|+..+++.|||+|+||+|+++++.|||||+|+|||||+|||++|+.|+++|++|++
T Consensus 252 ~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~ 331 (408)
T PLN03193 252 ATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYAN 331 (408)
T ss_pred HHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCc
Confidence 89999999888888999999999998777788999999999987789999999999999999999999999999999999
Q ss_pred Cccccc-C----------------CCCcCcccccccCCceeeeeecccccccchHHHHHHhhccCCCCCCcceeccC
Q 039742 124 EDLSPL-L----------------TKFLDCEWKAKAGNACVASFDWSCSGICKSVERMKIGHNSCGEGDGAVWNVDF 183 (183)
Q Consensus 124 EDVsvG-~----------------~~~~~~~~~~~~~~~c~~~~~~~c~g~c~~~~~~~~~h~~c~~~~~~~~~~~~ 183 (183)
|||||| | +++|+|+||+++|++|+|+|||+|||||+|++||+++|++|||+++|+|+++|
T Consensus 332 EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~~~~~~~~~ 408 (408)
T PLN03193 332 EDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSATF 408 (408)
T ss_pred chhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCcccceeecC
Confidence 999999 4 57899999999999999999999999999999999999999999999999986
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-58 Score=394.62 Aligned_cols=180 Identities=56% Similarity=0.904 Sum_probs=166.4
Q ss_pred CCCCCCeEEEEEeecCCCCChhHHHHHHHHHHhcCCEEeec-ch------------------------------------
Q 039742 1 MEKGKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLTLN-HV------------------------------------ 43 (183)
Q Consensus 1 le~~~gv~~rFvIG~s~~~~~~ld~~L~~E~~~ygDiL~ld-~~------------------------------------ 43 (183)
||+++||++|||||+ .+.+++++++|++|+++|+|||+|| |+
T Consensus 44 le~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~ 122 (274)
T KOG2288|consen 44 LEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHEEAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVR 122 (274)
T ss_pred hccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhHHHHHHHHHHHHHHHHHHHHhccceEEEEccccceec
Confidence 789999999999999 4456789999999999999999999 76
Q ss_pred -hhHHHHHHccCCCCceEEEeecCCccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHHHHHHhhCCcCCCCC
Q 039742 44 -SMLVNSLANHKSKPRIYIGCMKSGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLAAYISINLPILHRYA 122 (183)
Q Consensus 44 -~~L~~~L~~~~~~~rlY~G~~~~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla~~I~~n~~~l~~y~ 122 (183)
++|...|++++.+||+|||||++|||+.+|++|||||+ |+|||.|| |||||+|+|||||+|||+||++|++.|++|+
T Consensus 123 l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~ 200 (274)
T KOG2288|consen 123 LARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFGDNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYA 200 (274)
T ss_pred HHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcCcccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhc
Confidence 78999999999999999999999999999999999999 78999888 9999999999999999999999999999999
Q ss_pred CCccccc-C---------CCCcCccc--ccccCCceeeeeecccccccchHHHHHHhhccCCCCCCcceeccC
Q 039742 123 NEDLSPL-L---------TKFLDCEW--KAKAGNACVASFDWSCSGICKSVERMKIGHNSCGEGDGAVWNVDF 183 (183)
Q Consensus 123 ~EDVsvG-~---------~~~~~~~~--~~~~~~~c~~~~~~~c~g~c~~~~~~~~~h~~c~~~~~~~~~~~~ 183 (183)
||||||| | +.|.-|.. |++.++.|.+++||+|||||++++||+++|..|++++.+.|.+.|
T Consensus 201 nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~~~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 201 NEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAASFDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred cCCcccceeeeeeeeeEecCCcccccchhhhccceeeeeecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999 6 44445543 568999999999999999999999999999999999999998764
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.94 E-value=8.3e-27 Score=220.50 Aligned_cols=120 Identities=17% Similarity=0.234 Sum_probs=104.1
Q ss_pred CCeEEEEEeecCCCCChhHHHHHHHHHHhcCCEEeecch-------------------------------------hhHH
Q 039742 5 KGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLTLNHV-------------------------------------SMLV 47 (183)
Q Consensus 5 ~gv~~rFvIG~s~~~~~~ld~~L~~E~~~ygDiL~ld~~-------------------------------------~~L~ 47 (183)
.++.+||+||++.+. .++++|++|+++|||||++||+ ++|+
T Consensus 417 ~~v~~rFvVG~s~n~--~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll 494 (636)
T PLN03133 417 GAVAVRFFVGLHKNQ--MVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVL 494 (636)
T ss_pred CceEEEEEEecCCcH--HHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHH
Confidence 458999999998764 4899999999999999999987 7899
Q ss_pred HHHHccCCCCceEEEeec-CCccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHHHHHHh--hCCcCCCCCCC
Q 039742 48 NSLANHKSKPRIYIGCMK-SGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLAAYISI--NLPILHRYANE 124 (183)
Q Consensus 48 ~~L~~~~~~~rlY~G~~~-~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla~~I~~--n~~~l~~y~~E 124 (183)
++|++....+++|+|++. ...++|++++|||+|.. .|+ ++.|||||+|+|||||+|+|++|.. ++..+++|+.|
T Consensus 495 ~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~-eyp--~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lE 571 (636)
T PLN03133 495 ASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE-EWP--EETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLE 571 (636)
T ss_pred HHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH-HCC--CCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChh
Confidence 999876666789999885 35677999999999874 464 6899999999999999999998854 35689999999
Q ss_pred ccccc
Q 039742 125 DLSPL 129 (183)
Q Consensus 125 DVsvG 129 (183)
|||||
T Consensus 572 DVyvG 576 (636)
T PLN03133 572 DVAMG 576 (636)
T ss_pred hHhHH
Confidence 99999
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.93 E-value=3.3e-26 Score=186.24 Aligned_cols=123 Identities=27% Similarity=0.351 Sum_probs=105.8
Q ss_pred CCCeEEEEEeecCCCCChhHHHHHHHHHHhcCCEEeecch--------------------------------------hh
Q 039742 4 GKGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLTLNHV--------------------------------------SM 45 (183)
Q Consensus 4 ~~gv~~rFvIG~s~~~~~~ld~~L~~E~~~ygDiL~ld~~--------------------------------------~~ 45 (183)
..++.++||||.+..+...++++|++|+++|+|||++|+. ++
T Consensus 18 ~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~~ 97 (195)
T PF01762_consen 18 GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPDR 97 (195)
T ss_pred CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehHH
Confidence 4689999999999854556889999999999999999986 78
Q ss_pred HHHHHHcc---CCCCceEEEeecCCccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHHHHHHhhCCcCCCCC
Q 039742 46 LVNSLANH---KSKPRIYIGCMKSGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLAAYISINLPILHRYA 122 (183)
Q Consensus 46 L~~~L~~~---~~~~rlY~G~~~~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla~~I~~n~~~l~~y~ 122 (183)
|..+|.+. ..+..+|.++++.+++.|++.+|||+|+.. |+ .+.|||||+|+||+||+++|+.|..++..++.|.
T Consensus 98 l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~-y~--~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~ 174 (195)
T PF01762_consen 98 LVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEE-YP--DDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFFP 174 (195)
T ss_pred hhhhhhhcccCccccccccccccCCccccccccCceeeeee-cc--cccCCCcCCCCeEEecHHHHHHHHHHhhcCCCCC
Confidence 88888876 233445555777788899999999999754 64 5789999999999999999999988899999999
Q ss_pred CCccccc
Q 039742 123 NEDLSPL 129 (183)
Q Consensus 123 ~EDVsvG 129 (183)
+|||++|
T Consensus 175 ~eDv~iG 181 (195)
T PF01762_consen 175 LEDVFIG 181 (195)
T ss_pred chHHHHH
Confidence 9999999
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=193.66 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=108.0
Q ss_pred CCeEEEEEeecCCCCChhHHHHHHHHHHhcCCEEeecch--------------------------------------hhH
Q 039742 5 KGIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLTLNHV--------------------------------------SML 46 (183)
Q Consensus 5 ~gv~~rFvIG~s~~~~~~ld~~L~~E~~~ygDiL~ld~~--------------------------------------~~L 46 (183)
..|+.+|+||..++.. .++++|.+|++.|||||++|+. +.|
T Consensus 127 ~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L 205 (349)
T KOG2287|consen 127 GRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNL 205 (349)
T ss_pred CcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHH
Confidence 3588899999987654 5689999999999999999987 889
Q ss_pred HHHHHcc-CCCCceEEEeec-CCccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHHHHHHhhCCcCCCCCCC
Q 039742 47 VNSLANH-KSKPRIYIGCMK-SGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLAAYISINLPILHRYANE 124 (183)
Q Consensus 47 ~~~L~~~-~~~~rlY~G~~~-~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla~~I~~n~~~l~~y~~E 124 (183)
+.+|+++ .+.+++|+|.+. ..+++|++.+|||+|+. .|+ .+.|||||+|+|||||+|+|+.|..++..++.|..|
T Consensus 206 ~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~-~y~--~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iE 282 (349)
T KOG2287|consen 206 LEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES-EYP--CSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIE 282 (349)
T ss_pred HHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH-HCC--CCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchH
Confidence 9999988 678889999774 46888999999999985 465 579999999999999999999998899999999999
Q ss_pred ccccc
Q 039742 125 DLSPL 129 (183)
Q Consensus 125 DVsvG 129 (183)
||+||
T Consensus 283 DV~~g 287 (349)
T KOG2287|consen 283 DVFVG 287 (349)
T ss_pred HHHHH
Confidence 99999
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.52 E-value=1.9e-14 Score=129.45 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=101.1
Q ss_pred CeEEEEEeecCCCCChhHHHHHHHHHHhcCCEEeecch------------------------------------------
Q 039742 6 GIVIRFVIGHSATPGGVLDKAIDAEDAEHQDFLTLNHV------------------------------------------ 43 (183)
Q Consensus 6 gv~~rFvIG~s~~~~~~ld~~L~~E~~~ygDiL~ld~~------------------------------------------ 43 (183)
.+.++|++|...+.+=+++++|++|+++||||+++|+.
T Consensus 121 ~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a 200 (382)
T PTZ00210 121 SLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNV 200 (382)
T ss_pred hhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCC
Confidence 37789999998887556999999999999999999981
Q ss_pred --------------hhHHHHHHccCCCCceEEEeecC-CccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHH
Q 039742 44 --------------SMLVNSLANHKSKPRIYIGCMKS-GPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLA 108 (183)
Q Consensus 44 --------------~~L~~~L~~~~~~~rlY~G~~~~-g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla 108 (183)
+++++.|.. .+.+.+|+|.+.. ..+. .+.|||||.|+||+||+|+|
T Consensus 201 ~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA 261 (382)
T PTZ00210 201 SYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYNYYNRIW------------------RRNQLTYVNGYCITLSRDTA 261 (382)
T ss_pred CeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeCCCCccc------------------cCCCCCccccceeeccHHHH
Confidence 677788844 3344599997632 1111 12479999999999999999
Q ss_pred HHHHhhCCcCCC-----------------CCCCccccc-C------------CCCcCcccccccCCceee--eeeccccc
Q 039742 109 AYISINLPILHR-----------------YANEDLSPL-L------------TKFLDCEWKAKAGNACVA--SFDWSCSG 156 (183)
Q Consensus 109 ~~I~~n~~~l~~-----------------y~~EDVsvG-~------------~~~~~~~~~~~~~~~c~~--~~~~~c~g 156 (183)
+.|....+..++ +.+||+-|| + -.+.+|-+--.-...|.. +++.-|--
T Consensus 262 ~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvH 341 (382)
T PTZ00210 262 QAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGKFGVRKSVRNMSVVIH 341 (382)
T ss_pred HHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCCCCCccccccceEEEE
Confidence 977654444333 579999999 3 122355552222222321 22222333
Q ss_pred ccchHHHHHHhhccCCCCCC
Q 039742 157 ICKSVERMKIGHNSCGEGDG 176 (183)
Q Consensus 157 ~c~~~~~~~~~h~~c~~~~~ 176 (183)
-|.+. +-..+|...++...
T Consensus 342 hike~-dYa~Lm~~F~n~~~ 360 (382)
T PTZ00210 342 HIQEA-DYEMLMDYFPEGVI 360 (382)
T ss_pred ecCHH-HHHHHHHHhcCCCC
Confidence 45555 67778888777543
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=97.23 E-value=0.00044 Score=59.27 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=41.9
Q ss_pred CC-EEeecch-----hhHHHHHHccCCCCceEEEee-cCCccccCCCCccccccccccCCCCCCcCCCCcc-ceEeEeHH
Q 039742 35 QD-FLTLNHV-----SMLVNSLANHKSKPRIYIGCM-KSGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATG-QIYAISKD 106 (183)
Q Consensus 35 gD-iL~ld~~-----~~L~~~L~~~~~~~rlY~G~~-~~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G-~gYVlS~d 106 (183)
.| |++.|.. ++|..+|.+..+...+|+|.- ..++...-...+...+ ...-+.||+| +|||||+.
T Consensus 87 ~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~--------~~~~~~f~~GGaG~vlSr~ 158 (252)
T PF02434_consen 87 KDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS--------KDSGFWFATGGAGYVLSRA 158 (252)
T ss_dssp -SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------------EE-GGG-EEEEHH
T ss_pred ceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc--------CcCceEeeCCCeeHHHhHH
Confidence 35 7777743 999999999888888999954 2233211000001111 1234567655 78999999
Q ss_pred HHHHHH---hhCCcCCCCC----CCccccc
Q 039742 107 LAAYIS---INLPILHRYA----NEDLSPL 129 (183)
Q Consensus 107 la~~I~---~n~~~l~~y~----~EDVsvG 129 (183)
+++.+. .......... .||+.||
T Consensus 159 ~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG 188 (252)
T PF02434_consen 159 LLKKMSPWASGCKCPSTDEKIRLPDDMTLG 188 (252)
T ss_dssp HHHHHHHHHTT-TTS--TTTTTS-HHHHHH
T ss_pred HHHHHhhhcccccccCCcCCCCCcccChhh
Confidence 998662 2233333344 8999999
No 8
>PLN03153 hypothetical protein; Provisional
Probab=83.93 E-value=3.6 Score=39.48 Aligned_cols=76 Identities=26% Similarity=0.201 Sum_probs=46.7
Q ss_pred EEeecch-----hhHHHHHHccCCCCceEEEeec-CCccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHHHH
Q 039742 37 FLTLNHV-----SMLVNSLANHKSKPRIYIGCMK-SGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLAAY 110 (183)
Q Consensus 37 iL~ld~~-----~~L~~~L~~~~~~~rlY~G~~~-~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla~~ 110 (183)
++++|.. ++|+.+|++....+..|+|... .... . ..| .|.-.-+|+||+||+-|++.
T Consensus 214 fVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~q-----------n-~~f-----~~~fA~GGAG~~LSrPLae~ 276 (537)
T PLN03153 214 FVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSA-----------N-SYF-----SHNMAFGGGGIAISYPLAEA 276 (537)
T ss_pred EEEecCCccccHHHHHHHHhhcCCCCCEEeccccccccc-----------c-ccc-----ccccccCCceEEEcHHHHHH
Confidence 7777743 9999999998888889999541 1110 0 001 12222468899999999987
Q ss_pred HHhhC-CcCCCCC---CCccccc
Q 039742 111 ISINL-PILHRYA---NEDLSPL 129 (183)
Q Consensus 111 I~~n~-~~l~~y~---~EDVsvG 129 (183)
|+... .-...|. .+|.-||
T Consensus 277 L~~~~d~C~~rY~~~~~gD~rL~ 299 (537)
T PLN03153 277 LSRILDDCLDRYPKLYGSDDRLH 299 (537)
T ss_pred HHHHhhhhhhhcccCCCcHHHHH
Confidence 66432 2222332 3555566
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=75.67 E-value=5.1 Score=36.53 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=43.1
Q ss_pred hhHHHHHHccCCCCceEEEeecCCccccCCCCccccccccccCCCCCCcCCCCccceEeEeHHHHH-HHH---hhCCc-C
Q 039742 44 SMLVNSLANHKSKPRIYIGCMKSGPVLSQKGVKYHEPEYWKFGEEGNKYIRHATGQIYAISKDLAA-YIS---INLPI-L 118 (183)
Q Consensus 44 ~~L~~~L~~~~~~~rlY~G~~~~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla~-~I~---~n~~~-l 118 (183)
++|..+|.+..+.+-+|+|+.. .+.. + +. --..|+|||+|.+... ++. .+... .
T Consensus 184 eNLr~~L~~yDp~~p~YiG~~~-~~~~-------------~-----~~--y~~g~ag~~ls~aa~~~la~~l~~~~~~C~ 242 (364)
T KOG2246|consen 184 ENLRYVLSKYDPEKPVYLGYRS-KSYF-------------Q-----NG--YSSGGAGYVLSFAALRRLAERLLNNEDKCP 242 (364)
T ss_pred HHHHHHHhhcCCCCcEEecccc-cccc-------------c-----cc--cccCCCCcceeHHHHHHHHHHHhcchhhcc
Confidence 9999999998888889999752 1111 1 11 1146789999999886 343 22221 2
Q ss_pred CCCC--CCccccc
Q 039742 119 HRYA--NEDLSPL 129 (183)
Q Consensus 119 ~~y~--~EDVsvG 129 (183)
..+. .||+-||
T Consensus 243 ~~~~~~~eD~~i~ 255 (364)
T KOG2246|consen 243 QRYPSYGEDRRIG 255 (364)
T ss_pred cccCCchhHHHHH
Confidence 3354 8999999
No 10
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=40.48 E-value=59 Score=30.18 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=14.5
Q ss_pred CCCccceEeEeHHHHH
Q 039742 94 RHATGQIYAISKDLAA 109 (183)
Q Consensus 94 pya~G~gYVlS~dla~ 109 (183)
|+|.|.|+|.|.+.+.
T Consensus 394 p~C~G~G~v~s~~~~~ 409 (414)
T TIGR00757 394 PHCSGTGIVKTSETVL 409 (414)
T ss_pred CCCcCeeEEccHHHHH
Confidence 8999999999988765
No 11
>PF08576 DUF1764: Eukaryotic protein of unknown function (DUF1764); InterPro: IPR013885 This entry consists of eukaryotic proteins of unknown function, including many hypothetical proteins.
Probab=31.57 E-value=15 Score=27.25 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=15.1
Q ss_pred cCCCCCCCcccccC-------CCCcCcc
Q 039742 117 ILHRYANEDLSPLL-------TKFLDCE 137 (183)
Q Consensus 117 ~l~~y~~EDVsvG~-------~~~~~~~ 137 (183)
=|++|..|+.-||- ++|+||.
T Consensus 72 Gl~IYt~eEL~ig~~~gG~T~~CPFDC~ 99 (102)
T PF08576_consen 72 GLPIYTEEELGIGNPKGGGTPLCPFDCD 99 (102)
T ss_pred CceEecHHHhCCCCCCCCCCCCCCCcCC
Confidence 36677888888882 5777777
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=30.52 E-value=60 Score=25.71 Aligned_cols=22 Identities=18% Similarity=-0.056 Sum_probs=15.6
Q ss_pred CccceEeEeHHHHHHHHhhCCc
Q 039742 96 ATGQIYAISKDLAAYISINLPI 117 (183)
Q Consensus 96 a~G~gYVlS~dla~~I~~n~~~ 117 (183)
++-+||+||+.-|+.+......
T Consensus 170 ~~t~aY~Is~~gA~kLL~~~~~ 191 (200)
T PF01755_consen 170 YGTCAYLISRKGARKLLEASKP 191 (200)
T ss_pred CcceeeeeCHHHHHHHHHhCcC
Confidence 4557999999999855443433
No 13
>PRK11712 ribonuclease G; Provisional
Probab=26.81 E-value=98 Score=29.47 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=15.1
Q ss_pred CCCCccceEeEeHHHHH
Q 039742 93 IRHATGQIYAISKDLAA 109 (183)
Q Consensus 93 ~pya~G~gYVlS~dla~ 109 (183)
=|+|.|.|+|+|.+.+.
T Consensus 405 Cp~C~G~G~v~s~e~~~ 421 (489)
T PRK11712 405 CPTCHGRGTVKTVETVC 421 (489)
T ss_pred CCCCCCCCCcCCHHHHH
Confidence 38999999999998874
No 14
>PRK10811 rne ribonuclease E; Reviewed
Probab=26.39 E-value=82 Score=32.83 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=14.7
Q ss_pred CCCCccceEeEeHHHHH
Q 039742 93 IRHATGQIYAISKDLAA 109 (183)
Q Consensus 93 ~pya~G~gYVlS~dla~ 109 (183)
-|.|.|.|+|+|.+.+.
T Consensus 404 Cp~C~GtG~v~s~etla 420 (1068)
T PRK10811 404 CPRCSGTGTVRDNESLS 420 (1068)
T ss_pred CcccCCCcccccHHHHH
Confidence 38899999999999774
No 15
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.59 E-value=70 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=26.9
Q ss_pred EEEEEeecCCCCChhHHHHHHHHHHhcCCEEeecch
Q 039742 8 VIRFVIGHSATPGGVLDKAIDAEDAEHQDFLTLNHV 43 (183)
Q Consensus 8 ~~rFvIG~s~~~~~~ld~~L~~E~~~ygDiL~ld~~ 43 (183)
+|.|+.|.+. +.+++.+.+....-=||.++|+.
T Consensus 126 KI~~i~g~a~---esLd~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 126 KITFIEGPAL---ESLDELLADGESGTFDFAFVDAD 158 (237)
T ss_pred eeeeeecchh---hhHHHHHhcCCCCceeEEEEccc
Confidence 5779999754 45899999987777799999965
No 16
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.58 E-value=1.1e+02 Score=27.31 Aligned_cols=46 Identities=28% Similarity=0.601 Sum_probs=32.9
Q ss_pred hcCCEEeec-chhhHHHHHHccCCCCc-----eEEE-ee--cCCccccCCCCcccccc
Q 039742 33 EHQDFLTLN-HVSMLVNSLANHKSKPR-----IYIG-CM--KSGPVLSQKGVKYHEPE 81 (183)
Q Consensus 33 ~ygDiL~ld-~~~~L~~~L~~~~~~~r-----lY~G-~~--~~g~v~r~~~~Kwyep~ 81 (183)
.++|| | .++.+.++|+++.++|. ||.| |+ +.|||+-||.--|-.+|
T Consensus 165 ~f~di---d~~~~~v~elL~~hqpqPsLlHGDLW~gN~a~~~~GPv~fDPA~y~GDrE 219 (286)
T COG3001 165 TFGDI---DAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDGPVIFDPACYWGDRE 219 (286)
T ss_pred CccCH---HHHHHHHHHHHhcCCCCcceeecccccccccccCCCCeeeccccccCCcc
Confidence 45565 6 45889999999886654 6666 33 56999999877775554
Done!