Query 039742
Match_columns 183
No_of_seqs 172 out of 312
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 22:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 98.0 3.6E-06 1.2E-10 71.6 5.0 78 44-129 109-195 (280)
2 2hgo_A CASSIICOLIN; toxin, dis 27.7 14 0.00049 20.4 0.2 13 142-156 14-26 (27)
3 1lg4_A Doppel protein, prion-l 17.0 18 0.00061 27.1 -1.1 14 74-87 51-64 (129)
4 1i17_A Mouse doppel, prion-lik 13.1 15 0.00053 26.6 -2.3 14 74-87 25-38 (107)
5 2agh_C Zinc finger protein HRX 13.0 1E+02 0.0036 17.4 1.6 21 100-120 4-24 (31)
6 2gx1_A Neurotoxin MAGI-5; spid 12.6 81 0.0028 17.6 1.1 21 138-160 7-28 (29)
7 1q4k_B Serine/threonine-protei 12.2 62 0.0021 26.9 0.8 25 76-108 64-88 (259)
8 1ju8_A Leginsulin, albumin 1; 9.6 71 0.0024 19.1 0.2 10 153-162 2-11 (37)
9 3p34_A Serine/threonine-protei 8.9 96 0.0033 25.4 0.8 25 76-108 46-70 (232)
10 1p8b_A PEA albumin 1, subunit 8.4 74 0.0025 19.0 -0.1 10 153-162 2-11 (37)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=98.05 E-value=3.6e-06 Score=71.63 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=44.0
Q ss_pred hhHHHHHHccCCCCceEEEee-cCCccccCCCCccccccccccCCCCCCcCCCCc-cceEeEeHHHHHHHHhhCCcC---
Q 039742 44 SMLVNSLANHKSKPRIYIGCM-KSGPVLSQKGVKYHEPEYWKFGEEGNKYIRHAT-GQIYAISKDLAAYISINLPIL--- 118 (183)
Q Consensus 44 ~~L~~~L~~~~~~~rlY~G~~-~~g~v~r~~~~Kwyep~~~~f~d~g~~Y~pya~-G~gYVlS~dla~~I~~n~~~l--- 118 (183)
++|..+|.+..+.+.+|+|.. ..+|+ + .+++.|.+. .. ...++||+ |+|||||+++++.+......-
T Consensus 109 ~nL~~~L~~~d~~~~~YiG~~~~~~~~-~---~~~~~~~~~-~~---~~~~~y~~GGaG~vlSr~~l~~l~~~~~~~~~~ 180 (280)
T 2j0a_A 109 KALLQLLKTFPQDRDVYVGKPSLNRPI-H---ASELQSKQR-TK---LVRFWFATGGAGFCINRQLALKMVPWASGSHFV 180 (280)
T ss_dssp HHHHHHHTTSCTTSCCEEECEEC---------------------------CCEECGGGCEEEEHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHhCCCCCCEEEEEeccCccc-c---ccccCcccc-cc---ccccCcccCCCEEEECHHHHHHHHHhhcccccc
Confidence 999999998877888999965 33443 2 245555422 11 12346775 578999999998665322221
Q ss_pred ----CCCCCCccccc
Q 039742 119 ----HRYANEDLSPL 129 (183)
Q Consensus 119 ----~~y~~EDVsvG 129 (183)
+....|||+||
T Consensus 181 ~~~~~~~~~dD~~lG 195 (280)
T 2j0a_A 181 DTSALIRLPDDCTVG 195 (280)
T ss_dssp CCTTTTTSCHHHHHH
T ss_pred cccccCCCCccHHHH
Confidence 22346899999
No 2
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=27.71 E-value=14 Score=20.38 Aligned_cols=13 Identities=54% Similarity=1.400 Sum_probs=9.0
Q ss_pred cCCceeeeeeccccc
Q 039742 142 AGNACVASFDWSCSG 156 (183)
Q Consensus 142 ~~~~c~~~~~~~c~g 156 (183)
+|..|-+| |.|||
T Consensus 14 cgdncgns--wacsg 26 (27)
T 2hgo_A 14 CGDNCGNS--WACSG 26 (27)
T ss_dssp EECSSSCE--EECSC
T ss_pred ccCCcCCc--ccccC
Confidence 45567788 66887
No 3
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=17.04 E-value=18 Score=27.08 Aligned_cols=14 Identities=43% Similarity=1.168 Sum_probs=12.3
Q ss_pred CCccccccccccCC
Q 039742 74 GVKYHEPEYWKFGE 87 (183)
Q Consensus 74 ~~Kwyep~~~~f~d 87 (183)
+.+|||..||.|+|
T Consensus 51 gNrYYeanYwqFPD 64 (129)
T 1lg4_A 51 GNRYYEANYWQFPD 64 (129)
T ss_dssp HHHHHHHHGGGSCS
T ss_pred cchhhhhccccCCC
Confidence 56899999999986
No 4
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=13.13 E-value=15 Score=26.62 Aligned_cols=14 Identities=36% Similarity=1.082 Sum_probs=12.2
Q ss_pred CCccccccccccCC
Q 039742 74 GVKYHEPEYWKFGE 87 (183)
Q Consensus 74 ~~Kwyep~~~~f~d 87 (183)
+.+|||..||.|+|
T Consensus 25 gNrYYeanYwqFPD 38 (107)
T 1i17_A 25 GNRYYAANYWQFPD 38 (107)
T ss_dssp HHHHHHHHGGGSCS
T ss_pred cchhhhhccccCCC
Confidence 56899999999986
No 5
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=12.99 E-value=1e+02 Score=17.42 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.5
Q ss_pred eEeEeHHHHHHHHhhCCcCCC
Q 039742 100 IYAISKDLAAYISINLPILHR 120 (183)
Q Consensus 100 gYVlS~dla~~I~~n~~~l~~ 120 (183)
|-+|-+|+..|+..|.++.+.
T Consensus 4 gnilpsdimdfvlkntpsmqa 24 (31)
T 2agh_C 4 GNILPSDIMDFVLKNTPSMQA 24 (31)
T ss_dssp CCSSCHHHHHHHHHHSCCCCC
T ss_pred cccChHHHHHHHHhCChhHHH
Confidence 568889999999998887654
No 6
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=12.59 E-value=81 Score=17.62 Aligned_cols=21 Identities=38% Similarity=1.159 Sum_probs=11.8
Q ss_pred cccccCCceeeeeecccc-cccch
Q 039742 138 WKAKAGNACVASFDWSCS-GICKS 160 (183)
Q Consensus 138 ~~~~~~~~c~~~~~~~c~-g~c~~ 160 (183)
||+.-.+.|+. |. .|. |||-|
T Consensus 7 w~ck~~keccg-wn-~c~lg~c~p 28 (29)
T 2gx1_A 7 WKCKNKKECCG-WN-ACALGICMP 28 (29)
T ss_dssp SCCSSTTSBSS-CC-CBCSSSBCC
T ss_pred EEecCCccccc-cc-ccccceecC
Confidence 44444555653 33 376 88865
No 7
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel beta sheet with one alpha helix, transferase; HET: TPO; 2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Probab=12.23 E-value=62 Score=26.90 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=17.6
Q ss_pred ccccccccccCCCCCCcCCCCccceEeEeHHHH
Q 039742 76 KYHEPEYWKFGEEGNKYIRHATGQIYAISKDLA 108 (183)
Q Consensus 76 Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla 108 (183)
..+++.|.+|. ++ +|.||+||-.-+
T Consensus 64 ~~wVsKWVDYS---nK-----YG~GYqLsdgsv 88 (259)
T 1q4k_B 64 IFWVSKWVDYS---DK-----YGLGYQLCDNSV 88 (259)
T ss_dssp SCCEEEEEEET---TT-----TEEEEEETTSCE
T ss_pred Ccceeeccccc---cc-----cceeEEecCCcE
Confidence 46677788875 34 489999986543
No 8
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=9.57 E-value=71 Score=19.11 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=7.6
Q ss_pred ccccccchHH
Q 039742 153 SCSGICKSVE 162 (183)
Q Consensus 153 ~c~g~c~~~~ 162 (183)
.|+|+|.|-+
T Consensus 2 ~C~gvCSPFe 11 (37)
T 1ju8_A 2 DCNGACSPFE 11 (37)
T ss_dssp CSCSEECSSS
T ss_pred ccccccCCcc
Confidence 3889998854
No 9
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=8.93 E-value=96 Score=25.41 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=17.9
Q ss_pred ccccccccccCCCCCCcCCCCccceEeEeHHHH
Q 039742 76 KYHEPEYWKFGEEGNKYIRHATGQIYAISKDLA 108 (183)
Q Consensus 76 Kwyep~~~~f~d~g~~Y~pya~G~gYVlS~dla 108 (183)
..+++.|.+|. ++ +|.||.||-.-+
T Consensus 46 ~~wVskWVDYS---~K-----YG~GYqLsdgsv 70 (232)
T 3p34_A 46 IFWVSKWVDYS---DK-----YGLGYQLCDNSV 70 (232)
T ss_dssp SCCEEEEEEET---TT-----TEEEEEETTSCE
T ss_pred Ceeeeeeeccc---Cc-----cceEEEecCCcE
Confidence 56778888875 34 499999986543
No 10
>1p8b_A PEA albumin 1, subunit B; inhibitor cystine-knot, plant protein; NMR {Pisum sativum} SCOP: g.3.6.4
Probab=8.38 E-value=74 Score=19.05 Aligned_cols=10 Identities=50% Similarity=1.331 Sum_probs=7.7
Q ss_pred ccccccchHH
Q 039742 153 SCSGICKSVE 162 (183)
Q Consensus 153 ~c~g~c~~~~ 162 (183)
.|+|+|.|-+
T Consensus 2 ~C~gvCSPFe 11 (37)
T 1p8b_A 2 SCNGVCSPFE 11 (37)
T ss_dssp CCEEEECTTC
T ss_pred cccccccCcc
Confidence 3889998865
Done!