BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039743
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/530 (46%), Positives = 324/530 (61%), Gaps = 20/530 (3%)
Query: 8 VLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDAP 67
+LILD+GSQYT I NP +ILSGGP S ++P
Sbjct: 10 ILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSP 69
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
P ++ GV V G+CYG+Q M +L G V+ ++E+G ++ V S +
Sbjct: 70 RAP----QYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGI 125
Query: 128 KVGHHQV------VWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVT 181
+ VWMSHGD+ +P F VA ++ A + N EKR +G+Q+HPEVT
Sbjct: 126 EDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVT 185
Query: 182 HSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAA 241
H+ +GM L F+ D+C A W ++D+ V I++ VG +D VI LSGGVDS+V A
Sbjct: 186 HTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVG-DDKVILGLSGGVDSSVTA 244
Query: 242 TLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDP 301
L+H+AIG L CVFVDNGLLR E E+V+D F L + V A D+FLS L G DP
Sbjct: 245 MLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDP 304
Query: 302 ETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361
E KRKIIG+ F+ +FD A LE +L QGT+YPDVIES TG+ +H IK
Sbjct: 305 EAKRKIIGRVFVEVFDEEALKLEDV-----KWLAQGTIYPDVIESAAS-ATGK--AHVIK 356
Query: 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDV 421
SHHNVGGLPK+MK+ L+EPLK LFKDEVR++G L +P L RHPFPGPGL VRVLG+V
Sbjct: 357 SHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEV 416
Query: 422 TEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAV 481
+ D+LR+ D IFI+ +++A LYD + QAF VFLPVRSVGV GD R + VV+LRAV
Sbjct: 417 KK-EYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAV 475
Query: 482 TSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
+ D MTA W + + FL V+ +I N V G++RVV DI+ KPP+TIEWE
Sbjct: 476 ETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE 525
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 450 bits (1158), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/536 (45%), Positives = 333/536 (62%), Gaps = 33/536 (6%)
Query: 8 VLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSV---HSP 64
+LILD+GSQY + I NP +ILSGGP +V H+
Sbjct: 13 ILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLSHTL 72
Query: 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIF 124
APAF G VLGICYG+Q M +L G V K E+G ++ V + +F
Sbjct: 73 RAPAF-------IFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLF 125
Query: 125 GNKKVGHHQV---------VWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQ 175
+ QV VWMSHGD LP GFE A + +AA+ + ++R FGLQ
Sbjct: 126 DGIE---DQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNSPLAAMADFKRRFFGLQ 182
Query: 176 YHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGV 235
+HPEVTH+P+G L +F+ +C W ++++++ ++ I++ VG E VI LSGGV
Sbjct: 183 FHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQEKVGKE-QVIVGLSGGV 241
Query: 236 DSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL 295
DS V ATLVHKAIGD+L CV VD GLLR E + V++ F+K L V CVDA D+F+ L
Sbjct: 242 DSAVTATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRFMKAL 301
Query: 296 KGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRT 355
KG+ DPE KRKI G++FI +F+ A L K +L QGT+YPDVIES T
Sbjct: 302 KGISDPEEKRKIAGEQFIRVFEEQAKKLNVK------WLGQGTIYPDVIESAK---TKTG 352
Query: 356 HSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAV 415
H IK+HHNVGGLP +M+LKLIEPL+ LFKDEVR+LG L +P + RHPFPGPGLA+
Sbjct: 353 KGHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFPGPGLAI 412
Query: 416 RVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHV 475
R+LG+V+ ++IL+Q D IFI+ +K++ Y + QAFAVF+P++SVGV+GD R + ++
Sbjct: 413 RILGEVS-AEYINILKQADAIFIEELKKSDYYHQVSQAFAVFMPLKSVGVKGDARHYGYI 471
Query: 476 VALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
+ALRAV + D MTA W H+FL V+ +I N ++ V+RVV D+T+KPP+TIEWE
Sbjct: 472 IALRAVKTVDFMTAQWADLPHEFLSKVSHRIVNEIKEVSRVVYDMTNKPPATIEWE 527
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 249/526 (47%), Positives = 336/526 (63%), Gaps = 24/526 (4%)
Query: 7 LVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDA 66
+VL+LD+GSQYT +++ P+ +ILSGGP SV PDA
Sbjct: 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
P P L S+G+ +LGICYG+QL+ Q+L G V+ + EYG+ L+ R G
Sbjct: 61 PR-PDPRL---FSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGKA--LLTRHEGPLFR 114
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
G QV WMSH D P G+ VVA +++ VAA+ + + R +G+Q+HPEV H+P+G
Sbjct: 115 GLEGEVQV-WMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKG 173
Query: 187 METLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHK 246
M+ L FL ++ GV W E+VL+E ++ +++ G +D V+ A+SGGVDS+ A L+ K
Sbjct: 174 MQILENFL-ELAGVKRDWTPEHVLEELLREVRERAG-KDRVLLAVSGGVDSSTLALLLAK 231
Query: 247 AIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRK 306
A D L VFVD+GLLR ERE V + L + + VDA ++FL LKGV DPE KRK
Sbjct: 232 AGVDHL-AVFVDHGLLRLGEREEVEGAL-RALGVNLLVVDAKERFLKALKGVEDPEEKRK 289
Query: 307 IIGKEFICIFDAFAHDLEQKLGKKP-AYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHN 365
IIG+EF+ F A + + P +L QGTLYPDVIES G + IKSHHN
Sbjct: 290 IIGREFVAAFSQVARE------RGPFRFLAQGTLYPDVIESA-----GGHGAAKIKSHHN 338
Query: 366 VGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGN 425
VGGLP+D++ +L+EP +LLFKDEVR+L +L +P+ RHPFPGPGLAVRVLG+VTE
Sbjct: 339 VGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTE-E 397
Query: 426 SLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQD 485
L+ILR+ D+IF ++E GLY+ + QA AV PVRSVGV GD+R + +V+ALRAVT++D
Sbjct: 398 RLEILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTED 457
Query: 486 GMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
MTADW +FLD+ AR+I V + RVV D+TSKPP+TIEWE
Sbjct: 458 FMTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/525 (46%), Positives = 331/525 (63%), Gaps = 24/525 (4%)
Query: 8 VLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDAP 67
VL+LD+GSQYT +++ P+ +ILSGGP SV PDAP
Sbjct: 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP 61
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
P L S+G+ +LGICYG QL+ Q+L G V+ + EYG+ L+ R G
Sbjct: 62 R-PDPRL---FSSGLPLLGICYGXQLLAQELGGRVERAGRAEYGKA--LLTRHEGPLFRG 115
Query: 128 KVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGM 187
G QV W SH D P G+ VVA +++ VAA+ + + R +G+Q+HPEV H+P+G
Sbjct: 116 LEGEVQV-WXSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGX 174
Query: 188 ETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKA 247
+ L FL ++ GV W E+VL+E ++ +++ G +D V+ A+SGGVDS+ A L+ KA
Sbjct: 175 QILENFL-ELAGVKRDWTPEHVLEELLREVRERAG-KDRVLLAVSGGVDSSTLALLLAKA 232
Query: 248 IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKI 307
D L VFVD+GLLR ERE V + L + + VDA ++FL LKGV DPE KRKI
Sbjct: 233 GVDHL-AVFVDHGLLRLGEREEVEGAL-RALGVNLLVVDAKERFLKALKGVEDPEEKRKI 290
Query: 308 IGKEFICIFDAFAHDLEQKLGKKP-AYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNV 366
IG+EF+ F A + + P +L QGTLYPDVIES G + IKSHHNV
Sbjct: 291 IGREFVAAFSQVARE------RGPFRFLAQGTLYPDVIESA-----GGHGAAKIKSHHNV 339
Query: 367 GGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNS 426
GGLP+D++ +L+EP +LLFKDEVR+L +L +P+ RHPFPGPGLAVRVLG+VTE
Sbjct: 340 GGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTE-ER 398
Query: 427 LDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDG 486
L+ILR+ D+IF ++E GLY+ + QA AV PVRSVGV GD+R + +V+ALRAVT++D
Sbjct: 399 LEILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTEDF 458
Query: 487 MTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
TADW +FLD+ AR+I V + RVV D+TSKPP+TIEWE
Sbjct: 459 XTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/556 (40%), Positives = 327/556 (58%), Gaps = 41/556 (7%)
Query: 8 VLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDAP 67
+L+L++GSQY H DI N + VILSGGP+SV +P
Sbjct: 10 ILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSP 69
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGI---- 123
E+ L + + GICYG+Q + +++G VK + EYG ++ + R+ I
Sbjct: 70 HLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNIT 129
Query: 124 --------------FGNKKVGHHQ------------VVWMSHGDEAVVLPDGFEVVARSQ 157
+ N K+ + VWM+H DE +P+ F +V+ S+
Sbjct: 130 YCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSE 189
Query: 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCI 217
+ ++ N+E ++G+QYHPEV S +G F +++C + + E+K I
Sbjct: 190 NCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRYHELELKNI 249
Query: 218 KDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKD 277
+ + +VI A+SGG+DSTVAA HK +R +F+DNGLLR E E V TF K
Sbjct: 250 -EKYKHDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVY-TFLKS 307
Query: 278 LH--LPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLV 335
+ +T +DA++ FLS L+GV DPE KRKIIGK FI F+ ++++ + K +L+
Sbjct: 308 TFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINK--TFLL 365
Query: 336 QGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRI 395
QGTLYPD+IES + S TIK+HHNVGGLPK++K KL EP K LFKD+V+ L R
Sbjct: 366 QGTLYPDIIES----KCSKNLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDDVKTLSRE 421
Query: 396 LNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFA 455
LN+PE+ RHPFPGPGLA+RV+G++ + + L+ILR+VD+IFI +K+ GLY+ I QAFA
Sbjct: 422 LNLPEEITNRHPFPGPGLAIRVIGEINK-HKLNILREVDDIFINDLKQYGLYNQISQAFA 480
Query: 456 VFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNR 515
V L +SVGV+GD R++ +V LRAV + MTA+WY + LD + +I + V+GVNR
Sbjct: 481 VLLSSKSVGVRGDARSYDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILSEVKGVNR 540
Query: 516 VVQDITSKPPSTIEWE 531
++ D++SKPP+TIE+E
Sbjct: 541 ILYDVSSKPPATIEFE 556
>pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|2DPL|B Chain B, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|3A4I|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
pdb|3A4I|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
Length = 308
Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/322 (50%), Positives = 216/322 (67%), Gaps = 20/322 (6%)
Query: 210 LDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERER 269
++E+V+ I++TVG + I ALSGGVDS+ AA L HKAIGDRLH VFV+ G LR E E
Sbjct: 7 VEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEF 65
Query: 270 VMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGK 329
V+ TF + + + VDA D+F S LKGV DPE KRKIIG+ FI +F+ A +K+G
Sbjct: 66 VVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVA----KKIGA 121
Query: 330 KPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEV 389
+ YL+QGT+ PD IES IKSHHNVGGLP+ + LKLIEPL+ L+KDEV
Sbjct: 122 E--YLIQGTIAPDWIES----------QGKIKSHHNVGGLPEKLNLKLIEPLRDLYKDEV 169
Query: 390 RQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDL 449
R+L + L +PE+ R PFPGPGLAVRV+G+VT + I+R+ + I + ++ AGL
Sbjct: 170 RELAKFLGLPEKIYNRMPFPGPGLAVRVIGEVTP-EKIRIVREANAIVEEEVERAGLRP- 227
Query: 450 IWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNT 509
WQAFAV L V++VGVQGD R + +A+R V S DGMTA+ + L +A +I +
Sbjct: 228 -WQAFAVLLGVKTVGVQGDIRAYKETIAVRIVESIDGMTANAMNVPWEVLQRIAFRITSE 286
Query: 510 VRGVNRVVQDITSKPPSTIEWE 531
+ V RV+ DIT+KPP+TIE+E
Sbjct: 287 IPEVGRVLYDITNKPPATIEFE 308
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 190/569 (33%), Positives = 290/569 (50%), Gaps = 69/569 (12%)
Query: 8 VLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDAP 67
V+ILD G+QY I + R +I+SGGP+SV++ DAP
Sbjct: 32 VVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAP 91
Query: 68 AF-PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
F PA F + G VLGICYG+Q+M + G V +E G I V+ + +F
Sbjct: 92 WFDPAIF-----TIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLF-- 144
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
+ + +VV ++HGD + DGF+VVARS VA + N K+L+G Q+HPEV + G
Sbjct: 145 RGLQKEEVVLLTHGDSVDKVADGFKVVARSGN-IVAGIANESKKLYGAQFHPEVGLTENG 203
Query: 187 METLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHK 246
L+ FL+D+ G + + ++N E ++ IK+ VG V+ LSGGVDSTV L+++
Sbjct: 204 KVILKNFLYDIAGCSGTFTVQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNR 262
Query: 247 AIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF-------------- 291
A+ +++ V +DNG +R +E + V + +K L + V ++A F
Sbjct: 263 ALNQEQVIAVHIDNGFMRKRESQSVEEALKK-LGIQVKVINAAHSFYNGTTTLPISDEDR 321
Query: 292 -----LSK-LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIE 345
+SK L PE KRKIIG F+ I + E L + +L QGTL PD+IE
Sbjct: 322 TPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIG--EMNLKPEEVFLAQGTLRPDLIE 379
Query: 346 SCPPPGTGRTHSHTIKSHHNVGGLPKDMKL--KLIEPLKLLFKDEVRQLGRILNVPEQFL 403
S +G+ + IK+HHN L + ++ K+IEPLK KDEVR LGR L +PE+ +
Sbjct: 380 SASLVASGK--AELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEELV 437
Query: 404 KRHPFPGPGLAVRVL--------GDVTEGNSL---------------DILRQVDEIFIQS 440
RHPFPGPGLA+RV+ D E N++ +L++V +
Sbjct: 438 SRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKKPHTLLQRVKACTTEE 497
Query: 441 IKEAGLYDLIWQAFAVF-LPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFL 499
+E + + F LP+++VGVQGD R++S+V ++S+D DW FL
Sbjct: 498 DQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVC---GISSKD--EPDWESL--IFL 550
Query: 500 DDVARKICNTVRGVNRVVQDITSKPPSTI 528
+ ++C+ V V + +PP+ +
Sbjct: 551 ARLIPRMCHNVNRVVYIFGPPVKEPPTDV 579
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 427 LDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVR-SVGVQGDQRTHSHVVALRAVTSQD 485
L LRQ D ++E+G I Q + P+ Q + V +R + D
Sbjct: 589 LSTLRQADFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSD 648
Query: 486 GMTADWYYFEHKFLDDVARKICNTVR---GVNRVVQDITSKPPSTIEWE 531
MT ++ +V K+ ++ G++R++ D+TSKPP T EWE
Sbjct: 649 FMTGIPATPGNEIPVEVVLKMVTEIKKIPGISRIMYDLTSKPPGTTEWE 697
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 8 VLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDAP 67
V+ILD G+QY I + R +I+SGGP+SV++ DAP
Sbjct: 27 VVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAP 86
Query: 68 AF-PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
F PA F + G VLGICYG+Q+M + G V +E G I V+ + +F
Sbjct: 87 WFDPAIF-----TIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLF-- 139
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
+ + +VV ++HGD + DGF+VVARS VA + N K+L+G Q+HPEV + G
Sbjct: 140 RGLQKEEVVLLTHGDSVDKVADGFKVVARSGN-IVAGIANESKKLYGAQFHPEVGLTENG 198
Query: 187 METLRYFLFDVCGVNAGWKL 206
L+ FL+D+ G + + +
Sbjct: 199 KVILKNFLYDIAGCSGTFTV 218
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 7 LVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDA 66
+++I+D G QY H ++I A NP+ +I SGGP ++ +
Sbjct: 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNC 61
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
+ E+ V +LGIC G QL+ + G V GEK EY +EI + IF
Sbjct: 62 EKVLEHYDEF----NVPILGICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEXEIF-- 115
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
K + VW SH DE LP F+++ARS+ + A+++ E ++G+Q+HPEV H+ +G
Sbjct: 116 KGLPKRLKVWESHMDEVKELPPKFKILARSETXPIEAMKHEELPIYGVQFHPEVAHTEKG 175
Query: 187 METLRYFLFDVCG 199
E LR F +CG
Sbjct: 176 EEILRNFA-KLCG 187
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 7 LVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPDA 66
+++I+D G QY H ++I A NP+ +I SGGP ++ +
Sbjct: 22 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNC 81
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
+ E+ V +LGIC G QL+ + G V GEK EY +EI + IF
Sbjct: 82 EKVLEHYDEF----NVPILGICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEDEIF-- 135
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
K + VW SH DE LP F+++ARS+ + A+++ E ++G+Q+HPEV H+ +G
Sbjct: 136 KGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEVAHTEKG 195
Query: 187 METLRYFLFDVCG 199
E LR F +CG
Sbjct: 196 EEILRNFA-KLCG 207
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA 143
+LGIC G Q + V + E+G+ ++ V S IFG + VW +H DE
Sbjct: 88 ILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVXHSENIFGG--LPSEITVWENHNDEI 145
Query: 144 VVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+ LPD F + A S V ++ + ++ Q+HPEV H+ G + R F+
Sbjct: 146 INLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFI 196
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 45 TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV 104
T KNP V++LS GP V S +A P L L + ++GIC G Q +V+ G V
Sbjct: 45 TMKNP-VLMLSPGP-GVPS-EAGCMPE--LLTRLRGKLPIIGICLGHQAIVEAYGGYVGQ 99
Query: 105 GEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAV 164
+ +G+ + +F + + V H +P G + A G V AV
Sbjct: 100 AGEILHGKATSIEHDGQAMFAG--LANPLPVARYHSLVGSNVPAGLTINAHFN-GMVMAV 156
Query: 165 ENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+ R+ G Q+HPE + +G L L
Sbjct: 157 RHDADRVCGFQFHPESILTTQGARLLEQTL 186
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 51 VVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEY 110
V++LS GP + +A P L L + ++GIC G Q +V+ G V + +
Sbjct: 51 VLMLSPGPGT--PSEAGCMPE--LLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILH 106
Query: 111 GRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKR 170
G+ + G+F + + V H +P V AR + V AV + +R
Sbjct: 107 GKASAIAHDGEGMFAG--MANPLPVARYHSLVGSNIPADLTVNARFGE-MVMAVRDDRRR 163
Query: 171 LFGLQYHPEVTHSPEGMETLRYFL 194
+ G Q+HPE + G L L
Sbjct: 164 VCGFQFHPESILTTHGARLLEQTL 187
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 30/183 (16%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT--C 284
V+ LSGG+DS V L K + H + + + + + + ++ EK +P T
Sbjct: 28 VVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEK-FSIPYTEYS 86
Query: 285 VDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344
+ D S D RK G + AF +D K LV GT
Sbjct: 87 IAPYDAIFSS--HFKDASLTRK--GNFCARLRMAFLYDYSLKSDS----LVIGT------ 132
Query: 345 ESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLK 404
S+ + G L D+ I P+ LFK EV +L R LN+P++ L
Sbjct: 133 ------------SNKSERMLGYGTLFGDLACA-INPIGELFKTEVYELARRLNIPKKILN 179
Query: 405 RHP 407
+ P
Sbjct: 180 KPP 182
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 30/139 (21%)
Query: 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDG-----VVKVGEK---------QE 109
P ++ + AL G + IC G QL+ L G + +V K ++
Sbjct: 91 PPRDSYEIALVRAALDAGKPIFAICRGXQLVNVALGGTLYQDISQVETKALQHLQRVDEQ 150
Query: 110 YGRMEILVERSSGIFG---NKKVG---HHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163
G I +E +S + NKK+ HHQ + L F+V AR+ G + A
Sbjct: 151 LGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKK--------LAPSFKVTARTADGXIEA 202
Query: 164 VE--NREKRLFGLQYHPEV 180
VE N G+Q+HPE+
Sbjct: 203 VEGDNLPSWYLGVQWHPEL 221
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKK-----------VGHHQ 133
G C GL L+ +++ G ++ G +I VER+S FG ++ VG
Sbjct: 98 FGTCAGLILLAKRIVGY----DEPHLGLXDITVERNS--FGRQRESFEAELSIKGVGDGF 151
Query: 134 VVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVT 181
V V DG +V+A VAA R+ + G +HPE+T
Sbjct: 152 VGVFIRAPHIVEAGDGVDVLATYNDRIVAA---RQGQFLGCSFHPELT 196
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 42 DDITAK-----NPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQ 96
D+I+ K +P +I+S GP + + +++ L +LG+C G Q +
Sbjct: 34 DEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKY-LGKRTPILGVCLGHQAIGY 92
Query: 97 KLDGVVKVGEKQEYGRME--ILVERS--SGIFG----NKKVGHHQVVWMSHGDEAVVLPD 148
++ K +G++ ILV S S +G K +H +V + V P
Sbjct: 93 AFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVV-----DEVHRPL 147
Query: 149 GFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+ ++ ++ + A+ + E ++G+Q+HPE + G + L FL
Sbjct: 148 IVDAIS-AEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFL 192
>pdb|3D54|D Chain D, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|H Chain H, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|L Chain L, Stucture Of Purlqs From Thermotoga Maritima
Length = 213
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 22/148 (14%)
Query: 51 VVILSGG--------PHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK--LDG 100
++IL GG P +V + + AF + A G ++GI G Q++++ L G
Sbjct: 44 LIILPGGFSYGDYLRPGAVAAREKIAFE---IAKAAERGKLIMGIXNGFQILIEMGLLKG 100
Query: 101 VVKVGEKQEY--GRMEILVERSSGIFGNK-KVGHHQVVWMSHGDEAVVLPDGFEVVAR-- 155
+ ++ ++++VE + F N + G + ++HG V D VV R
Sbjct: 101 ALLQNSSGKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFGRYVKIDDVNVVLRYV 160
Query: 156 ----SQQGAVAAVENREKRLFGLQYHPE 179
+A V N +FGL HPE
Sbjct: 161 KDVNGSDERIAGVLNESGNVFGLMPHPE 188
>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase
pdb|1JGT|B Chain B, Crystal Structure Of Beta-Lactam Synthetase
pdb|1M1Z|A Chain A, Beta-Lactam Synthetase Apo Enzyme
pdb|1M1Z|B Chain B, Beta-Lactam Synthetase Apo Enzyme
pdb|1MB9|A Chain A, Beta-Lactam Synthetase Complexed With Atp
pdb|1MB9|B Chain B, Beta-Lactam Synthetase Complexed With Atp
pdb|1MBZ|A Chain A, Beta-Lactam Synthetase With Trapped Intermediate
pdb|1MBZ|B Chain B, Beta-Lactam Synthetase With Trapped Intermediate
pdb|1MC1|A Chain A, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
pdb|1MC1|B Chain B, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
Length = 513
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMD-- 272
K + V D + LSGG+DS+ A H+A G+ + ++E V+D
Sbjct: 232 KAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDTSNEFREARAVVDHL 291
Query: 273 -TFEKDLHLPVTCVDATDQFLSKLKGVIDPE 302
T +++ +P T + A + +DP+
Sbjct: 292 RTRHREITIPTTELLAQLPYAVWASESVDPD 322
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 82 VYV--LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFG 125
VY+ +GI L M+ +L G K GE E GR I GIFG
Sbjct: 62 VYITFMGIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFG 107
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 341 PDVIESCPPPGTGRTHSHTIKSHHNVGGLP-KDMKLKLIEPLKLLFKDEVRQL 392
P +E PPG S N+GG K KLK+ + +KLL ++E +L
Sbjct: 181 PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKL 233
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 341 PDVIESCPPPGTGRTHSHTIKSHHNVGGLP-KDMKLKLIEPLKLLFKDEVRQL 392
P +E PPG S N+GG K KLK+ + +KLL ++E +L
Sbjct: 180 PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKL 232
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 341 PDVIESCPPPGTGRTHSHTIKSHHNVGGLP-KDMKLKLIEPLKLLFKDEVRQL 392
P +E PPG S N+GG K KLK+ + +KLL ++E +L
Sbjct: 187 PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKL 239
>pdb|3LV1|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
Length = 457
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 400 EQFLKRHPFPGPGLAVRVLG---DVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAV 456
+Q K HP P LAV V G DV +G I+ Q IQS +A + ++ AF+
Sbjct: 377 DQVNKHHPKP---LAVYVFGKDMDVAKG----IINQ-----IQS-GDAQVNGVMLHAFSP 423
Query: 457 FLPVRSVGVQGDQRTHSH 474
+LP +G G H H
Sbjct: 424 YLPFGGIGASGMGEYHGH 441
>pdb|3LNS|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
Length = 457
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 400 EQFLKRHPFPGPGLAVRVLG---DVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAV 456
+Q K HP P LAV V G DV +G I+ Q IQS +A + ++ AF+
Sbjct: 377 DQVNKHHPKP---LAVYVFGKDMDVAKG----IINQ-----IQS-GDAQVNGVMLHAFSP 423
Query: 457 FLPVRSVGVQGDQRTHSH 474
+LP +G G H H
Sbjct: 424 YLPFGGIGASGMGEYHGH 441
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,655,481
Number of Sequences: 62578
Number of extensions: 712835
Number of successful extensions: 1686
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 31
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)