Query 039743
Match_columns 531
No_of_seqs 510 out of 4239
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02347 GMP synthetase 100.0 1E-138 3E-143 1113.8 51.6 525 6-531 11-536 (536)
2 PRK00074 guaA GMP synthase; Re 100.0 3E-133 6E-138 1076.3 50.6 509 4-531 2-511 (511)
3 KOG1622 GMP synthase [Nucleoti 100.0 7E-133 2E-137 992.6 28.3 519 4-531 15-552 (552)
4 COG0519 GuaA GMP synthase, PP- 100.0 5E-111 1E-115 795.0 24.3 315 203-531 1-315 (315)
5 TIGR00884 guaA_Cterm GMP synth 100.0 1.3E-89 2.8E-94 692.3 27.8 311 208-531 1-311 (311)
6 PRK00919 GMP synthase subunit 100.0 4.5E-89 9.8E-94 683.1 27.2 306 204-531 2-307 (307)
7 cd01997 GMP_synthase_C The C-t 100.0 2.2E-87 4.7E-92 669.9 26.4 294 226-530 1-295 (295)
8 COG0518 GuaA GMP synthase - Gl 100.0 1.1E-44 2.4E-49 342.1 16.4 192 5-201 1-197 (198)
9 PF00958 GMP_synt_C: GMP synth 100.0 6.2E-45 1.4E-49 295.7 7.9 93 438-530 1-93 (93)
10 TIGR00888 guaA_Nterm GMP synth 100.0 3.3E-39 7.1E-44 305.8 20.8 188 8-201 1-188 (188)
11 cd01742 GATase1_GMP_Synthase T 100.0 5.6E-38 1.2E-42 295.7 19.9 181 8-194 1-181 (181)
12 CHL00101 trpG anthranilate syn 100.0 5.5E-38 1.2E-42 297.5 19.2 182 7-194 1-186 (190)
13 PRK07765 para-aminobenzoate sy 100.0 1E-37 2.2E-42 300.4 20.7 203 6-215 1-209 (214)
14 PRK05637 anthranilate synthase 100.0 2.3E-37 5E-42 296.0 20.0 185 5-194 1-202 (208)
15 PRK07649 para-aminobenzoate/an 100.0 2.4E-37 5.2E-42 293.6 19.1 182 7-194 1-185 (195)
16 PRK08007 para-aminobenzoate sy 100.0 5.1E-37 1.1E-41 289.9 20.6 181 7-194 1-185 (187)
17 PRK05670 anthranilate synthase 100.0 3.7E-37 8.1E-42 291.9 19.8 185 7-198 1-188 (189)
18 PRK06774 para-aminobenzoate sy 100.0 1.3E-36 2.7E-41 288.7 19.2 182 7-194 1-189 (191)
19 TIGR00566 trpG_papA glutamine 100.0 3E-36 6.6E-41 285.0 20.8 181 7-194 1-186 (188)
20 PRK00758 GMP synthase subunit 100.0 3E-36 6.5E-41 284.6 18.7 181 7-199 1-182 (184)
21 PRK08857 para-aminobenzoate sy 100.0 1.4E-35 3E-40 281.9 20.2 181 7-194 1-190 (193)
22 cd01743 GATase1_Anthranilate_S 100.0 1.8E-35 3.9E-40 279.3 20.5 180 8-194 1-184 (184)
23 PRK09522 bifunctional glutamin 100.0 9.7E-36 2.1E-40 320.2 21.1 231 5-245 1-240 (531)
24 PLN02335 anthranilate synthase 100.0 1.2E-35 2.5E-40 287.5 19.5 187 6-199 19-214 (222)
25 COG0512 PabA Anthranilate/para 100.0 3.1E-35 6.8E-40 269.1 19.5 184 5-194 1-188 (191)
26 PRK06895 putative anthranilate 100.0 4.2E-34 9.1E-39 271.1 19.9 181 6-194 2-186 (190)
27 PF00117 GATase: Glutamine ami 100.0 8.1E-35 1.7E-39 276.7 14.1 182 9-195 1-190 (192)
28 TIGR01815 TrpE-clade3 anthrani 100.0 1.8E-32 3.9E-37 302.7 22.3 190 4-199 515-710 (717)
29 COG1606 ATP-utilizing enzymes 100.0 1.3E-32 2.9E-37 259.9 17.9 247 211-525 4-257 (269)
30 PRK14607 bifunctional glutamin 100.0 3.4E-32 7.4E-37 294.9 18.8 227 7-244 1-234 (534)
31 PRK13566 anthranilate synthase 100.0 9.2E-32 2E-36 297.6 21.4 186 6-198 527-718 (720)
32 cd01744 GATase1_CPSase Small c 100.0 1.5E-31 3.2E-36 251.1 18.5 173 8-194 1-178 (178)
33 cd01748 GATase1_IGP_Synthase T 100.0 7.7E-31 1.7E-35 250.6 13.9 176 8-194 1-198 (198)
34 PRK13146 hisH imidazole glycer 100.0 7.7E-31 1.7E-35 252.0 13.8 182 5-194 1-205 (209)
35 PRK05665 amidotransferase; Pro 100.0 9.7E-30 2.1E-34 248.5 21.2 173 7-183 4-191 (240)
36 TIGR00268 conserved hypothetic 100.0 1.4E-29 3.1E-34 250.4 19.9 242 215-524 3-250 (252)
37 PRK09065 glutamine amidotransf 100.0 5.1E-30 1.1E-34 250.9 16.5 181 5-194 1-197 (237)
38 PRK13170 hisH imidazole glycer 100.0 2.9E-30 6.2E-35 245.7 13.9 175 6-194 1-194 (196)
39 PRK06490 glutamine amidotransf 100.0 1.8E-29 3.8E-34 246.9 19.4 178 5-194 7-190 (239)
40 PRK11366 puuD gamma-glutamyl-g 100.0 9.8E-30 2.1E-34 251.1 16.9 198 1-199 1-245 (254)
41 PRK13181 hisH imidazole glycer 100.0 4.8E-30 1E-34 245.1 13.8 176 8-194 2-197 (199)
42 PRK12564 carbamoyl phosphate s 100.0 1.3E-29 2.9E-34 259.8 17.6 175 6-194 178-357 (360)
43 PRK07053 glutamine amidotransf 100.0 5.5E-29 1.2E-33 242.7 19.8 180 5-194 2-189 (234)
44 PRK13141 hisH imidazole glycer 100.0 5.4E-30 1.2E-34 246.0 12.4 180 7-198 1-202 (205)
45 COG0118 HisH Glutamine amidotr 100.0 2E-29 4.4E-34 232.0 14.7 179 5-194 1-200 (204)
46 CHL00188 hisH imidazole glycer 100.0 1.5E-29 3.2E-34 242.4 13.6 175 5-194 1-207 (210)
47 PRK07567 glutamine amidotransf 100.0 6.8E-29 1.5E-33 243.4 18.6 175 6-183 2-195 (242)
48 cd01741 GATase1_1 Subgroup of 100.0 1.1E-28 2.3E-33 233.9 18.3 178 7-194 1-188 (188)
49 TIGR01368 CPSaseIIsmall carbam 100.0 6.6E-29 1.4E-33 254.3 16.8 177 6-198 174-356 (358)
50 PRK13152 hisH imidazole glycer 100.0 1.1E-28 2.4E-33 236.0 14.9 175 8-194 2-199 (201)
51 PLN02889 oxo-acid-lyase/anthra 100.0 2.4E-28 5.2E-33 272.5 18.7 191 6-199 82-336 (918)
52 PRK13143 hisH imidazole glycer 100.0 1.8E-28 3.9E-33 234.3 14.1 179 6-198 1-198 (200)
53 COG2071 Predicted glutamine am 100.0 2.8E-28 6E-33 230.2 13.4 179 18-199 28-239 (243)
54 TIGR01823 PabB-fungal aminodeo 100.0 7.6E-28 1.6E-32 268.4 19.2 189 6-199 6-205 (742)
55 TIGR01855 IMP_synth_hisH imida 100.0 2E-28 4.4E-33 233.2 12.5 175 8-194 1-194 (196)
56 PRK13525 glutamine amidotransf 100.0 7.5E-28 1.6E-32 227.7 15.9 176 5-199 1-188 (189)
57 PRK12838 carbamoyl phosphate s 100.0 8.9E-28 1.9E-32 245.6 17.1 178 6-199 168-351 (354)
58 PRK08250 glutamine amidotransf 100.0 2.6E-27 5.6E-32 231.4 19.3 178 7-194 2-191 (235)
59 PLN02771 carbamoyl-phosphate s 100.0 1.6E-27 3.5E-32 245.4 18.3 166 6-186 241-410 (415)
60 cd01745 GATase1_2 Subgroup of 100.0 5.1E-28 1.1E-32 229.1 13.4 151 17-194 20-189 (189)
61 CHL00197 carA carbamoyl-phosph 99.9 5.6E-27 1.2E-31 241.1 18.3 179 6-200 193-376 (382)
62 PRK14004 hisH imidazole glycer 99.9 3.4E-27 7.3E-32 226.1 14.2 174 8-194 2-207 (210)
63 PRK13527 glutamine amidotransf 99.9 1.7E-26 3.8E-31 220.7 15.7 180 7-198 2-197 (200)
64 PLN02617 imidazole glycerol ph 99.9 2.6E-25 5.6E-30 238.8 23.1 181 5-198 6-211 (538)
65 COG0505 CarA Carbamoylphosphat 99.9 8.3E-26 1.8E-30 223.5 16.8 176 6-194 180-359 (368)
66 PF07722 Peptidase_C26: Peptid 99.9 8.7E-26 1.9E-30 218.1 12.3 160 18-179 26-217 (217)
67 TIGR01737 FGAM_synth_I phospho 99.9 3.5E-24 7.5E-29 208.5 17.4 184 7-194 2-224 (227)
68 KOG0026 Anthranilate synthase, 99.9 8.2E-24 1.8E-28 185.9 15.2 190 7-205 20-219 (223)
69 PRK13142 hisH imidazole glycer 99.9 5.5E-24 1.2E-28 199.7 12.6 166 8-194 2-185 (192)
70 PF02540 NAD_synthase: NAD syn 99.9 4.7E-25 1E-29 215.8 5.2 196 210-438 2-203 (242)
71 cd01990 Alpha_ANH_like_I This 99.9 3.7E-23 8.1E-28 198.2 15.8 183 227-446 1-187 (202)
72 cd01747 GATase1_Glutamyl_Hydro 99.9 2.6E-23 5.6E-28 207.1 14.4 185 18-202 22-250 (273)
73 cd01746 GATase1_CTP_Synthase T 99.9 7.4E-23 1.6E-27 199.3 15.5 171 19-194 21-235 (235)
74 cd01749 GATase1_PB Glutamine A 99.9 5.3E-23 1.1E-27 193.8 13.6 168 8-194 1-183 (183)
75 TIGR03800 PLP_synth_Pdx2 pyrid 99.9 1.6E-22 3.5E-27 190.1 14.9 168 7-194 1-183 (184)
76 TIGR00342 thiazole biosynthesi 99.9 4.1E-22 8.8E-27 207.4 15.3 190 221-437 169-364 (371)
77 PRK13980 NAD synthetase; Provi 99.9 2.8E-22 6.1E-27 199.7 13.4 204 206-442 10-218 (265)
78 PRK01565 thiamine biosynthesis 99.9 4.6E-22 1E-26 208.6 13.9 188 221-437 173-368 (394)
79 PTZ00323 NAD+ synthase; Provis 99.9 9.8E-22 2.1E-26 196.4 14.1 220 196-444 16-251 (294)
80 cd00553 NAD_synthase NAD+ synt 99.9 7.5E-22 1.6E-26 195.0 11.2 203 208-443 5-217 (248)
81 TIGR00337 PyrG CTP synthase. C 99.9 1.6E-21 3.4E-26 206.0 13.6 183 6-194 290-523 (525)
82 PRK03619 phosphoribosylformylg 99.9 8.7E-21 1.9E-25 183.5 16.9 184 7-194 2-217 (219)
83 PRK06186 hypothetical protein; 99.9 2.9E-21 6.4E-26 184.9 13.3 184 7-199 3-227 (229)
84 TIGR00552 nadE NAD+ synthetase 99.9 3.9E-21 8.4E-26 190.1 13.2 196 211-439 7-211 (250)
85 PRK00768 nadE NAD synthetase; 99.9 4.4E-21 9.6E-26 188.3 13.3 207 199-437 11-236 (268)
86 KOG3179 Predicted glutamine sy 99.8 3.2E-21 7E-26 175.4 9.2 164 15-182 24-196 (245)
87 PRK05380 pyrG CTP synthetase; 99.8 1E-20 2.3E-25 199.7 13.9 185 7-199 290-527 (533)
88 PRK05368 homoserine O-succinyl 99.8 3.4E-20 7.4E-25 185.1 15.8 185 6-192 36-250 (302)
89 PF03054 tRNA_Me_trans: tRNA m 99.8 3.3E-21 7.2E-26 197.0 8.5 170 225-413 1-198 (356)
90 PRK08384 thiamine biosynthesis 99.8 2.1E-20 4.5E-25 193.3 13.5 185 221-436 177-370 (381)
91 PRK00143 mnmA tRNA-specific 2- 99.8 7.2E-20 1.6E-24 188.7 14.9 171 225-414 1-194 (346)
92 KOG0370 Multifunctional pyrimi 99.8 8.1E-20 1.8E-24 196.4 15.1 212 5-235 172-388 (1435)
93 PRK08349 hypothetical protein; 99.8 1.5E-19 3.1E-24 172.7 15.2 180 226-433 2-188 (198)
94 cd01993 Alpha_ANH_like_II This 99.8 1.4E-19 3.1E-24 170.6 13.6 159 226-400 1-174 (185)
95 TIGR02432 lysidine_TilS_N tRNA 99.8 1.1E-19 2.5E-24 172.1 12.9 161 226-409 1-173 (189)
96 cd01712 ThiI ThiI is required 99.8 2.3E-19 5E-24 168.3 14.6 152 226-400 1-158 (177)
97 PRK00876 nadE NAD synthetase; 99.8 1.2E-19 2.6E-24 183.7 12.7 197 209-438 15-273 (326)
98 PF02568 ThiI: Thiamine biosyn 99.8 4.1E-20 8.9E-25 173.9 8.4 183 223-434 2-192 (197)
99 cd01998 tRNA_Me_trans tRNA met 99.8 3.5E-19 7.5E-24 184.0 14.2 170 226-413 1-194 (349)
100 PF01171 ATP_bind_3: PP-loop f 99.8 7.3E-20 1.6E-24 172.5 8.2 158 226-409 1-169 (182)
101 PRK14665 mnmA tRNA-specific 2- 99.8 6.3E-19 1.4E-23 181.6 15.7 181 221-414 2-195 (360)
102 COG0482 TrmU Predicted tRNA(5- 99.8 5.9E-19 1.3E-23 177.7 13.9 160 224-400 3-185 (356)
103 PLN02327 CTP synthase 99.8 5.6E-19 1.2E-23 186.9 13.6 186 7-198 299-546 (557)
104 KOG1224 Para-aminobenzoate (PA 99.8 4.1E-19 8.9E-24 181.5 12.0 187 7-198 16-217 (767)
105 PLN02832 glutamine amidotransf 99.8 2E-18 4.4E-23 167.7 14.7 87 5-98 1-89 (248)
106 PRK11106 queuosine biosynthesi 99.8 1.5E-18 3.4E-23 167.9 13.1 165 225-406 2-188 (231)
107 COG0171 NadE NAD synthase [Coe 99.8 1.2E-18 2.6E-23 171.0 11.8 205 207-441 6-225 (268)
108 TIGR00420 trmU tRNA (5-methyla 99.8 3.2E-18 6.9E-23 176.5 14.8 170 225-413 1-197 (352)
109 PRK10696 tRNA 2-thiocytidine b 99.8 2.2E-18 4.8E-23 171.2 12.2 166 214-400 17-197 (258)
110 cd01992 PP-ATPase N-terminal d 99.8 3.4E-18 7.4E-23 161.3 12.6 158 226-409 1-169 (185)
111 PRK13981 NAD synthetase; Provi 99.8 6.5E-18 1.4E-22 185.0 14.4 201 208-442 262-479 (540)
112 PRK13820 argininosuccinate syn 99.7 1E-17 2.2E-22 173.5 13.7 158 224-409 2-172 (394)
113 cd01740 GATase1_FGAR_AT Type 1 99.7 3E-17 6.5E-22 161.0 16.4 175 9-183 2-217 (238)
114 PRK00509 argininosuccinate syn 99.7 9.6E-18 2.1E-22 173.7 11.1 156 224-409 2-175 (399)
115 PRK14664 tRNA-specific 2-thiou 99.7 2.8E-17 6E-22 169.0 13.4 173 223-414 4-190 (362)
116 PRK01269 tRNA s(4)U8 sulfurtra 99.7 4.8E-17 1E-21 175.1 15.8 184 221-434 174-364 (482)
117 COG0301 ThiI Thiamine biosynth 99.7 5.2E-17 1.1E-21 165.7 14.8 188 221-434 172-365 (383)
118 COG0037 MesJ tRNA(Ile)-lysidin 99.7 3.8E-17 8.3E-22 165.9 12.0 158 224-400 21-188 (298)
119 TIGR00364 exsB protein. This p 99.7 5.3E-17 1.2E-21 155.4 11.6 157 227-397 1-172 (201)
120 COG0047 PurL Phosphoribosylfor 99.7 2.9E-16 6.3E-21 147.3 16.1 184 5-194 2-227 (231)
121 PRK01175 phosphoribosylformylg 99.7 5.7E-16 1.2E-20 152.9 18.9 188 6-194 4-254 (261)
122 PRK13526 glutamine amidotransf 99.7 1.8E-16 3.9E-21 146.4 14.0 167 6-194 3-177 (179)
123 COG0504 PyrG CTP synthase (UTP 99.7 6.5E-17 1.4E-21 166.0 12.0 185 7-198 290-526 (533)
124 PLN00200 argininosuccinate syn 99.7 7.4E-17 1.6E-21 167.3 11.8 149 225-400 6-170 (404)
125 KOG2805 tRNA (5-methylaminomet 99.7 9E-17 2E-21 155.6 11.2 172 224-413 5-204 (377)
126 PRK04527 argininosuccinate syn 99.7 1.6E-16 3.5E-21 164.0 12.6 147 224-401 2-169 (400)
127 PRK10660 tilS tRNA(Ile)-lysidi 99.7 2.2E-16 4.7E-21 167.7 13.1 161 215-400 6-177 (436)
128 PRK14561 hypothetical protein; 99.7 1.6E-16 3.5E-21 150.8 10.5 141 226-396 2-146 (194)
129 cd01999 Argininosuccinate_Synt 99.7 3.2E-16 6.9E-21 162.5 12.2 154 227-409 1-172 (385)
130 TIGR00032 argG argininosuccina 99.7 4.4E-16 9.5E-21 161.9 12.6 154 226-409 1-171 (394)
131 PRK02628 nadE NAD synthetase; 99.7 4.7E-16 1E-20 173.9 12.5 200 209-442 344-579 (679)
132 PF06508 QueC: Queuosine biosy 99.6 3.2E-16 7E-21 150.2 8.3 167 226-406 1-183 (209)
133 cd01713 PAPS_reductase This do 99.6 3.4E-15 7.3E-20 138.2 14.1 162 226-408 1-169 (173)
134 KOG0623 Glutamine amidotransfe 99.6 9.2E-16 2E-20 149.7 10.2 177 6-195 2-206 (541)
135 COG0603 Predicted PP-loop supe 99.6 3.5E-15 7.7E-20 141.1 13.0 166 224-405 2-185 (222)
136 cd01995 ExsB ExsB is a transcr 99.6 2.3E-15 5.1E-20 140.0 11.0 144 226-404 1-144 (169)
137 COG0311 PDX2 Predicted glutami 99.6 1.2E-14 2.6E-19 131.8 11.8 175 6-193 1-189 (194)
138 PF13507 GATase_5: CobB/CobQ-l 99.5 4.6E-13 9.9E-18 131.9 16.0 173 6-182 2-230 (259)
139 PRK05253 sulfate adenylyltrans 99.5 2.4E-13 5.1E-18 137.0 14.2 173 209-400 12-205 (301)
140 PF01174 SNO: SNO glutamine am 99.5 2.8E-14 6.1E-19 131.1 6.0 167 10-194 1-183 (188)
141 PRK08576 hypothetical protein; 99.4 7.5E-13 1.6E-17 139.0 13.3 171 214-409 226-396 (438)
142 cd01986 Alpha_ANH_like Adenine 99.4 1.6E-12 3.5E-17 110.7 8.3 103 227-382 1-103 (103)
143 TIGR01857 FGAM-synthase phosph 99.4 2.3E-11 4.9E-16 141.0 18.9 189 6-194 978-1236(1239)
144 cd01996 Alpha_ANH_like_III Thi 99.3 3.9E-12 8.4E-17 116.4 9.3 111 226-344 3-116 (154)
145 PLN02339 NAD+ synthase (glutam 99.3 9.9E-12 2.2E-16 139.1 14.1 199 211-434 333-598 (700)
146 PRK05370 argininosuccinate syn 99.3 1.4E-11 3E-16 127.5 13.7 165 221-409 8-192 (447)
147 KOG1559 Gamma-glutamyl hydrola 99.3 1.4E-12 3.1E-17 122.2 5.3 168 13-183 73-273 (340)
148 COG0137 ArgG Argininosuccinate 99.3 7.5E-11 1.6E-15 118.8 15.2 161 224-409 4-177 (403)
149 PRK02090 phosphoadenosine phos 99.3 2.3E-11 5E-16 119.7 11.4 158 225-409 41-203 (241)
150 TIGR03573 WbuX N-acetyl sugar 99.3 2.9E-11 6.3E-16 124.9 11.9 133 201-343 35-173 (343)
151 TIGR02039 CysD sulfate adenyly 99.3 5.8E-11 1.3E-15 118.7 13.2 173 212-404 7-201 (294)
152 KOG2387 CTP synthase (UTP-ammo 99.3 2.4E-11 5.3E-16 122.9 10.4 133 47-183 362-532 (585)
153 PLN03206 phosphoribosylformylg 99.2 3.6E-10 7.7E-15 132.2 17.6 177 5-182 1037-1273(1307)
154 PF00764 Arginosuc_synth: Argi 99.2 3.5E-11 7.5E-16 124.0 7.8 157 228-409 1-170 (388)
155 TIGR01735 FGAM_synt phosphorib 99.2 2.3E-10 4.9E-15 134.7 15.0 176 6-182 1056-1281(1310)
156 TIGR03679 arCOG00187 arCOG0018 99.2 1.5E-10 3.2E-15 112.0 10.9 159 228-431 1-166 (218)
157 PF04204 HTS: Homoserine O-suc 99.2 6.2E-11 1.3E-15 117.6 7.9 185 7-193 36-250 (298)
158 PRK05297 phosphoribosylformylg 99.1 7E-10 1.5E-14 131.0 17.4 174 6-182 1036-1260(1290)
159 PRK13794 hypothetical protein; 99.1 5.9E-10 1.3E-14 119.7 14.7 184 206-409 228-413 (479)
160 PRK13795 hypothetical protein; 99.1 1.3E-09 2.9E-14 121.1 16.8 184 206-409 224-409 (636)
161 PRK12563 sulfate adenylyltrans 99.1 8.3E-10 1.8E-14 110.9 13.3 178 207-403 20-218 (312)
162 cd03131 GATase1_HTS Type 1 glu 99.1 2E-10 4.3E-15 106.4 7.1 109 44-154 58-174 (175)
163 PF01507 PAPS_reduct: Phosphoa 99.1 5.4E-10 1.2E-14 104.0 8.8 162 226-409 1-164 (174)
164 TIGR01001 metA homoserine O-su 99.0 6.2E-10 1.4E-14 109.6 9.3 184 7-192 37-249 (300)
165 cd01994 Alpha_ANH_like_IV This 99.0 8.1E-10 1.8E-14 104.9 9.6 157 226-426 1-164 (194)
166 COG2117 Predicted subunit of t 99.0 1.3E-09 2.8E-14 96.6 8.5 141 226-396 2-148 (198)
167 PRK08557 hypothetical protein; 99.0 7.1E-09 1.5E-13 108.9 15.3 181 209-409 162-347 (417)
168 PRK06278 cobyrinic acid a,c-di 98.9 2.8E-08 6.1E-13 106.1 15.4 221 7-251 2-266 (476)
169 KOG3210 Imidazoleglycerol-phos 98.9 4.1E-09 8.8E-14 93.8 7.3 172 6-182 12-206 (226)
170 cd01750 GATase1_CobQ Type 1 gl 98.9 3.2E-09 7E-14 101.0 6.8 87 8-99 1-90 (194)
171 TIGR00434 cysH phosophoadenyly 98.8 6.4E-08 1.4E-12 93.5 14.6 158 225-409 14-178 (212)
172 PHA03366 FGAM-synthase; Provis 98.8 6E-08 1.3E-12 114.7 17.1 176 5-182 1028-1268(1304)
173 TIGR02057 PAPS_reductase phosp 98.8 5E-08 1.1E-12 94.9 13.7 160 224-409 25-193 (226)
174 COG0175 CysH 3'-phosphoadenosi 98.8 8.2E-08 1.8E-12 95.5 14.5 161 225-409 40-205 (261)
175 TIGR01739 tegu_FGAM_synt herpe 98.8 4.7E-08 1E-12 115.1 14.0 174 5-182 929-1169(1202)
176 cd03130 GATase1_CobB Type 1 gl 98.8 9.1E-08 2E-12 91.3 12.5 153 20-181 15-188 (198)
177 KOG1706 Argininosuccinate synt 98.7 6.5E-08 1.4E-12 94.2 10.2 160 224-409 5-181 (412)
178 cd01991 Asn_Synthase_B_C The C 98.7 6.6E-08 1.4E-12 96.6 10.6 121 215-345 6-131 (269)
179 COG1365 Predicted ATPase (PP-l 98.7 4.8E-08 1.1E-12 90.7 8.5 138 225-400 61-204 (255)
180 TIGR03183 DNA_S_dndC putative 98.6 3.4E-07 7.3E-12 96.8 12.5 170 215-400 3-204 (447)
181 PRK06850 hypothetical protein; 98.6 4.9E-07 1.1E-11 96.7 13.6 178 207-400 16-223 (507)
182 PF00733 Asn_synthase: Asparag 98.5 2E-07 4.3E-12 91.9 5.7 124 212-344 5-134 (255)
183 COG1897 MetA Homoserine trans- 98.5 2.8E-07 6.1E-12 87.8 6.4 150 41-193 92-251 (307)
184 cd01984 AANH_like Adenine nucl 98.4 5.8E-07 1.3E-11 73.6 7.1 62 227-346 1-64 (86)
185 PRK00784 cobyric acid synthase 98.4 1.8E-06 3.9E-11 93.7 12.2 184 7-204 253-452 (488)
186 KOG1907 Phosphoribosylformylgl 98.4 3.5E-06 7.5E-11 92.3 13.9 176 6-182 1059-1286(1320)
187 TIGR01536 asn_synth_AEB aspara 98.4 1.7E-06 3.6E-11 93.7 11.3 121 214-344 243-370 (467)
188 KOG2840 Uncharacterized conser 98.2 1.1E-06 2.4E-11 87.0 4.0 167 221-398 48-231 (347)
189 TIGR00289 conserved hypothetic 98.1 2.7E-05 5.9E-10 75.2 10.8 152 226-426 2-160 (222)
190 PRK01077 cobyrinic acid a,c-di 98.1 0.0001 2.3E-09 79.3 16.5 89 7-98 247-339 (451)
191 PLN02549 asparagine synthase ( 98.1 8.9E-06 1.9E-10 89.6 8.0 122 211-344 212-349 (578)
192 TIGR00379 cobB cobyrinic acid 98.0 0.0001 2.2E-09 79.2 14.8 177 7-198 246-447 (449)
193 PTZ00077 asparagine synthetase 98.0 2.3E-05 5.1E-10 86.5 9.6 123 210-344 223-363 (586)
194 PF07685 GATase_3: CobB/CobQ-l 98.0 3.4E-05 7.5E-10 70.9 9.1 53 46-99 5-60 (158)
195 cd01653 GATase1 Type 1 glutami 97.9 4.4E-05 9.5E-10 63.6 8.4 76 19-94 15-92 (115)
196 PRK09431 asnB asparagine synth 97.9 6.1E-05 1.3E-09 82.8 10.9 122 211-344 214-355 (554)
197 cd03128 GAT_1 Type 1 glutamine 97.9 3.7E-05 8.1E-10 61.1 6.8 76 19-94 15-92 (92)
198 TIGR03108 eps_aminotran_1 exos 97.9 4E-05 8.6E-10 86.0 8.7 79 213-292 247-325 (628)
199 TIGR02055 APS_reductase thiore 97.8 0.00024 5.2E-09 67.4 12.6 151 234-409 2-157 (191)
200 PRK13896 cobyrinic acid a,c-di 97.8 0.00042 9.1E-09 73.7 15.3 171 7-194 235-430 (433)
201 TIGR00313 cobQ cobyric acid sy 97.7 9.7E-05 2.1E-09 79.9 9.1 83 7-98 249-336 (475)
202 TIGR00424 APS_reduc 5'-adenyly 97.7 0.00078 1.7E-08 72.0 14.7 167 225-409 116-288 (463)
203 PLN02309 5'-adenylylsulfate re 97.6 0.0011 2.3E-08 70.9 14.8 168 225-409 111-283 (457)
204 TIGR03104 trio_amidotrans aspa 97.6 0.00025 5.4E-09 78.9 10.3 123 211-344 247-377 (589)
205 PRK11780 isoprenoid biosynthes 97.6 0.00069 1.5E-08 65.5 11.3 93 6-98 2-145 (217)
206 TIGR00290 MJ0570_dom MJ0570-re 97.4 0.0011 2.4E-08 64.1 10.5 154 226-426 2-161 (223)
207 cd03169 GATase1_PfpI_1 Type 1 97.4 0.00062 1.3E-08 63.8 8.3 49 48-97 76-124 (180)
208 COG2102 Predicted ATPases of P 97.4 0.0012 2.5E-08 63.0 9.9 155 226-426 2-162 (223)
209 COG0367 AsnB Asparagine syntha 97.4 0.00074 1.6E-08 74.1 10.0 118 217-344 223-346 (542)
210 cd03146 GAT1_Peptidase_E Type 97.3 0.0003 6.6E-09 67.9 5.7 92 6-97 32-130 (212)
211 COG1492 CobQ Cobyric acid synt 97.3 0.001 2.2E-08 70.5 9.8 84 7-98 253-342 (486)
212 TIGR01382 PfpI intracellular p 97.3 0.00061 1.3E-08 62.8 7.4 76 21-97 18-108 (166)
213 KOG0571 Asparagine synthase (g 97.3 0.0013 2.7E-08 67.8 9.2 119 214-344 215-347 (543)
214 COG3442 Predicted glutamine am 97.2 0.0026 5.5E-08 60.1 9.9 147 21-178 26-198 (250)
215 cd03134 GATase1_PfpI_like A ty 97.2 0.0013 2.8E-08 60.6 7.7 77 20-97 17-110 (165)
216 cd03147 GATase1_Ydr533c_like T 97.2 0.001 2.2E-08 65.0 7.3 52 46-97 92-143 (231)
217 cd03144 GATase1_ScBLP_like Typ 97.2 0.00025 5.4E-09 61.1 2.6 47 47-94 43-90 (114)
218 PF09825 BPL_N: Biotin-protein 97.1 0.011 2.5E-07 61.2 14.8 173 7-183 2-219 (367)
219 cd03133 GATase1_ES1 Type 1 glu 97.1 0.0029 6.4E-08 60.9 9.6 79 21-99 22-143 (213)
220 PRK11574 oxidative-stress-resi 96.9 0.0057 1.2E-07 58.1 10.0 91 6-96 3-114 (196)
221 cd03132 GATase1_catalase Type 96.9 0.0033 7.1E-08 56.4 7.5 91 6-97 2-111 (142)
222 KOG2594 Uncharacterized conser 96.8 0.013 2.7E-07 59.2 11.2 79 312-400 184-265 (396)
223 PRK04155 chaperone protein Hch 96.6 0.005 1.1E-07 62.0 6.8 51 47-97 146-196 (287)
224 PF01902 ATP_bind_4: ATP-bindi 96.5 0.0024 5.2E-08 61.7 4.2 159 226-432 2-166 (218)
225 COG3969 Predicted phosphoadeno 96.5 0.0044 9.5E-08 62.2 6.0 67 208-274 11-81 (407)
226 cd03148 GATase1_EcHsp31_like T 96.5 0.0061 1.3E-07 59.6 7.0 51 47-97 95-145 (232)
227 cd03135 GATase1_DJ-1 Type 1 gl 96.4 0.0093 2E-07 54.5 7.2 78 20-97 16-109 (163)
228 COG0693 ThiJ Putative intracel 96.3 0.02 4.3E-07 53.9 9.0 91 6-97 3-115 (188)
229 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.2 0.00095 2.1E-08 60.4 -0.5 61 37-97 26-87 (147)
230 cd03141 GATase1_Hsp31_like Typ 96.1 0.0077 1.7E-07 58.5 4.9 52 46-97 88-139 (221)
231 cd03140 GATase1_PfpI_3 Type 1 96.1 0.023 5E-07 52.6 7.8 49 47-97 59-107 (170)
232 PRK05282 (alpha)-aspartyl dipe 96.0 0.014 2.9E-07 57.1 6.3 93 6-99 32-131 (233)
233 cd03129 GAT1_Peptidase_E_like 95.8 0.023 5E-07 54.6 6.8 91 6-97 30-130 (210)
234 KOG2303 Predicted NAD synthase 95.7 0.068 1.5E-06 56.2 9.9 60 331-409 508-573 (706)
235 PF02677 DUF208: Uncharacteriz 95.5 0.14 3.1E-06 47.4 10.3 92 232-324 6-104 (176)
236 PRK11249 katE hydroperoxidase 95.3 0.035 7.5E-07 62.6 6.9 92 6-97 598-707 (752)
237 PF06283 ThuA: Trehalose utili 95.1 0.33 7E-06 46.8 12.2 166 7-181 1-199 (217)
238 TIGR01383 not_thiJ DJ-1 family 95.0 0.025 5.4E-07 52.6 3.9 51 47-97 62-112 (179)
239 COG0519 GuaA GMP synthase, PP- 94.9 0.0026 5.7E-08 62.2 -2.8 204 221-456 82-311 (315)
240 cd03138 GATase1_AraC_2 AraC tr 94.6 0.063 1.4E-06 50.7 5.7 51 47-97 68-120 (195)
241 KOG0573 Asparagine synthase [A 94.3 0.13 2.8E-06 53.7 7.4 35 224-258 250-286 (520)
242 COG1636 Uncharacterized protei 94.3 0.38 8.3E-06 44.7 9.6 100 224-324 3-110 (204)
243 KOG2764 Putative transcription 94.1 0.12 2.5E-06 49.6 6.1 74 22-97 25-115 (247)
244 cd03137 GATase1_AraC_1 AraC tr 93.6 0.17 3.6E-06 47.4 6.4 50 47-97 63-112 (187)
245 cd03136 GATase1_AraC_ArgR_like 91.9 0.38 8.2E-06 45.0 6.2 49 47-97 63-111 (185)
246 cd03139 GATase1_PfpI_2 Type 1 91.7 0.27 5.8E-06 45.8 4.9 50 47-97 61-110 (183)
247 COG1797 CobB Cobyrinic acid a, 90.9 1.7 3.7E-05 45.8 10.2 180 6-198 246-450 (451)
248 COG4285 Uncharacterized conser 90.3 7.9 0.00017 37.0 13.0 129 47-182 48-208 (253)
249 cd03145 GAT1_cyanophycinase Ty 89.4 0.78 1.7E-05 44.4 5.9 92 6-97 30-133 (217)
250 PF13278 DUF4066: Putative ami 89.0 0.23 5E-06 45.5 2.0 50 47-97 60-109 (166)
251 PRK03378 ppnK inorganic polyph 88.5 1.1 2.4E-05 45.4 6.5 81 1-91 1-97 (292)
252 PRK09393 ftrA transcriptional 87.7 1.2 2.7E-05 45.6 6.5 49 47-97 74-122 (322)
253 KOG2316 Predicted ATPase (PP-l 87.0 5.3 0.00012 38.2 9.5 62 226-288 2-73 (277)
254 PRK04539 ppnK inorganic polyph 83.9 5.4 0.00012 40.5 8.8 81 1-91 1-102 (296)
255 PRK02155 ppnK NAD(+)/NADH kina 83.2 4.6 9.9E-05 40.9 7.9 81 1-91 1-97 (291)
256 TIGR02069 cyanophycinase cyano 83.0 2.7 5.8E-05 41.6 6.0 92 6-97 29-132 (250)
257 COG4090 Uncharacterized protei 82.6 6 0.00013 34.6 7.1 81 7-89 28-124 (154)
258 PRK03767 NAD(P)H:quinone oxido 82.4 4.8 0.0001 38.2 7.4 32 6-38 2-40 (200)
259 PRK14077 pnk inorganic polypho 78.8 7.3 0.00016 39.4 7.6 78 4-91 9-98 (287)
260 PRK06756 flavodoxin; Provision 78.8 9.4 0.0002 34.1 7.7 50 6-55 2-56 (148)
261 PRK03372 ppnK inorganic polyph 75.8 5.4 0.00012 40.7 5.7 76 6-91 6-106 (306)
262 PRK09271 flavodoxin; Provision 75.7 16 0.00035 33.2 8.4 49 7-56 2-59 (160)
263 PRK05568 flavodoxin; Provision 75.1 24 0.00053 31.0 9.3 51 6-59 2-58 (142)
264 PRK02649 ppnK inorganic polyph 75.0 12 0.00026 38.2 8.0 76 5-90 1-101 (305)
265 TIGR00269 conserved hypothetic 73.2 4.4 9.5E-05 34.3 3.7 24 377-400 3-26 (104)
266 PRK07308 flavodoxin; Validated 71.5 20 0.00043 32.0 7.8 50 6-59 2-58 (146)
267 PF10288 DUF2392: Protein of u 71.3 3.1 6.7E-05 35.4 2.3 28 373-400 30-57 (107)
268 PRK01911 ppnK inorganic polyph 70.9 7.4 0.00016 39.4 5.3 75 7-91 2-98 (292)
269 COG4635 HemG Flavodoxin [Energ 70.9 6.8 0.00015 35.7 4.4 47 7-55 2-54 (175)
270 PF03575 Peptidase_S51: Peptid 69.5 1.4 3E-05 40.1 -0.3 77 17-93 1-81 (154)
271 COG2185 Sbm Methylmalonyl-CoA 69.2 18 0.00038 32.5 6.7 78 6-88 13-99 (143)
272 PRK02645 ppnK inorganic polyph 69.1 18 0.00039 36.9 7.8 77 4-89 2-89 (305)
273 PRK06703 flavodoxin; Provision 69.1 18 0.0004 32.4 7.1 47 6-54 2-54 (151)
274 TIGR01755 flav_wrbA NAD(P)H:qu 68.9 15 0.00032 34.8 6.7 30 7-37 2-38 (197)
275 cd01987 USP_OKCHK USP domain i 67.5 69 0.0015 27.0 10.2 87 226-341 1-96 (124)
276 PRK03708 ppnK inorganic polyph 67.0 22 0.00047 35.8 7.7 75 7-91 2-90 (277)
277 PRK05569 flavodoxin; Provision 66.6 46 0.001 29.2 9.1 52 5-59 1-58 (141)
278 PRK01231 ppnK inorganic polyph 66.4 18 0.0004 36.7 7.1 80 1-91 1-96 (295)
279 KOG0189 Phosphoadenosine phosp 66.3 88 0.0019 29.8 10.8 151 226-403 48-207 (261)
280 PRK01372 ddl D-alanine--D-alan 66.1 25 0.00053 35.5 8.1 75 6-88 5-89 (304)
281 PRK08105 flavodoxin; Provision 66.0 25 0.00054 31.7 7.2 33 5-38 1-39 (149)
282 PRK10490 sensor protein KdpD; 65.1 50 0.0011 39.0 11.4 64 224-288 250-322 (895)
283 COG3340 PepE Peptidase E [Amin 64.4 6.5 0.00014 37.6 3.1 86 6-91 33-128 (224)
284 PRK09004 FMN-binding protein M 64.4 32 0.00068 30.9 7.6 46 5-54 1-52 (146)
285 PRK02231 ppnK inorganic polyph 62.0 19 0.00041 36.1 6.1 62 19-90 3-75 (272)
286 cd05014 SIS_Kpsf KpsF-like pro 62.0 41 0.00089 28.8 7.7 77 7-89 2-82 (128)
287 PF09897 DUF2124: Uncharacteri 61.2 3.9 8.5E-05 36.6 1.0 81 6-89 20-119 (147)
288 TIGR02667 moaB_proteo molybden 60.8 73 0.0016 29.2 9.4 54 6-59 5-74 (163)
289 PLN02929 NADH kinase 59.1 21 0.00045 36.3 5.9 61 18-90 36-96 (301)
290 cd06281 PBP1_LacI_like_5 Ligan 57.8 58 0.0013 31.6 8.9 67 12-87 8-85 (269)
291 PRK12833 acetyl-CoA carboxylas 57.2 59 0.0013 35.2 9.5 79 1-83 1-79 (467)
292 TIGR01754 flav_RNR ribonucleot 57.2 36 0.00079 30.1 6.6 79 7-88 2-90 (140)
293 cd06299 PBP1_LacI_like_13 Liga 56.6 64 0.0014 31.1 8.9 59 19-87 19-84 (265)
294 cd06273 PBP1_GntR_like_1 This 56.2 66 0.0014 31.0 9.0 66 12-87 8-84 (268)
295 KOG0292 Vesicle coat complex C 55.8 11 0.00024 43.1 3.4 21 72-92 42-62 (1202)
296 cd06305 PBP1_methylthioribose_ 55.8 55 0.0012 31.7 8.3 61 19-87 19-86 (273)
297 COG4607 CeuA ABC-type enteroch 55.4 17 0.00037 36.6 4.4 28 2-35 55-82 (320)
298 cd06295 PBP1_CelR Ligand bindi 55.4 76 0.0016 30.8 9.3 57 21-87 32-93 (275)
299 cd06300 PBP1_ABC_sugar_binding 55.4 50 0.0011 32.1 8.0 72 8-87 2-91 (272)
300 COG0771 MurD UDP-N-acetylmuram 54.7 73 0.0016 34.3 9.4 81 5-98 7-107 (448)
301 cd00886 MogA_MoaB MogA_MoaB fa 53.9 51 0.0011 29.7 7.1 64 16-83 20-92 (152)
302 PRK01215 competence damage-ind 53.8 54 0.0012 32.7 7.8 55 5-59 3-73 (264)
303 PRK11104 hemG protoporphyrinog 53.7 76 0.0016 29.4 8.4 80 7-90 2-87 (177)
304 PF13407 Peripla_BP_4: Peripla 53.3 55 0.0012 31.5 7.9 68 12-87 7-86 (257)
305 cd01575 PBP1_GntR Ligand-bindi 53.3 73 0.0016 30.6 8.7 58 20-87 20-84 (268)
306 PRK14075 pnk inorganic polypho 53.1 44 0.00095 33.1 7.0 69 7-91 2-72 (256)
307 cd06298 PBP1_CcpA_like Ligand- 53.1 67 0.0015 30.9 8.5 66 12-87 8-84 (268)
308 cd06301 PBP1_rhizopine_binding 53.1 55 0.0012 31.7 7.9 68 12-87 8-87 (272)
309 cd06319 PBP1_ABC_sugar_binding 52.9 63 0.0014 31.3 8.3 68 12-87 8-86 (277)
310 cd06318 PBP1_ABC_sugar_binding 52.6 68 0.0015 31.3 8.5 68 12-87 8-86 (282)
311 PRK00421 murC UDP-N-acetylmura 52.4 75 0.0016 34.2 9.3 81 6-98 8-104 (461)
312 cd06310 PBP1_ABC_sugar_binding 52.1 58 0.0013 31.6 7.8 73 7-87 1-88 (273)
313 TIGR02945 SUF_assoc FeS assemb 51.9 14 0.00031 30.6 2.9 34 497-530 54-87 (99)
314 PRK03094 hypothetical protein; 50.7 41 0.00089 27.0 5.1 48 5-61 1-48 (80)
315 cd06320 PBP1_allose_binding Pe 50.3 62 0.0013 31.5 7.7 68 12-87 8-88 (275)
316 TIGR00147 lipid kinase, YegS/R 50.1 67 0.0015 32.2 8.0 60 19-87 22-88 (293)
317 PRK03673 hypothetical protein; 49.9 55 0.0012 34.7 7.5 55 5-59 1-71 (396)
318 COG3155 ElbB Uncharacterized p 49.8 30 0.00066 31.5 4.7 56 47-102 84-149 (217)
319 cd01541 PBP1_AraR Ligand-bindi 49.7 1E+02 0.0022 29.8 9.2 71 12-87 8-89 (273)
320 PF03698 UPF0180: Uncharacteri 49.4 47 0.001 26.7 5.3 48 5-61 1-48 (80)
321 cd06309 PBP1_YtfQ_like Peripla 49.1 70 0.0015 31.1 7.9 68 12-87 8-86 (273)
322 cd01545 PBP1_SalR Ligand-bindi 48.8 61 0.0013 31.3 7.4 67 12-87 8-86 (270)
323 smart00852 MoCF_biosynth Proba 48.7 56 0.0012 28.6 6.4 45 15-59 17-68 (135)
324 PRK14076 pnk inorganic polypho 48.2 31 0.00067 38.4 5.6 78 5-91 290-382 (569)
325 cd06283 PBP1_RegR_EndR_KdgR_li 48.0 1E+02 0.0022 29.6 8.8 66 12-87 8-84 (267)
326 cd00885 cinA Competence-damage 47.8 41 0.00088 31.1 5.5 77 17-99 20-103 (170)
327 PRK04308 murD UDP-N-acetylmura 47.5 97 0.0021 33.1 9.2 84 1-97 1-104 (445)
328 PRK09417 mogA molybdenum cofac 47.2 1.5E+02 0.0032 28.1 9.2 61 17-83 24-97 (193)
329 cd06282 PBP1_GntR_like_2 Ligan 47.1 1.1E+02 0.0024 29.3 8.9 68 12-88 8-86 (266)
330 cd01538 PBP1_ABC_xylose_bindin 47.1 88 0.0019 30.9 8.3 68 12-87 8-86 (288)
331 PF09075 STb_secrete: Heat-sta 46.4 4.4 9.6E-05 27.5 -0.8 17 83-99 31-47 (48)
332 PF07796 DUF1638: Protein of u 46.0 49 0.0011 30.3 5.8 42 253-294 120-161 (166)
333 TIGR00177 molyb_syn molybdenum 45.2 70 0.0015 28.5 6.5 43 17-59 28-77 (144)
334 cd06274 PBP1_FruR Ligand bindi 45.0 1.2E+02 0.0026 29.2 8.8 66 12-87 8-84 (264)
335 PRK06849 hypothetical protein; 44.7 50 0.0011 34.6 6.4 79 3-85 2-80 (389)
336 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.6 74 0.0016 27.1 6.4 76 7-89 1-81 (126)
337 cd01540 PBP1_arabinose_binding 44.2 91 0.002 30.5 7.9 59 20-87 20-85 (289)
338 COG2205 KdpD Osmosensitive K+ 43.9 1.9E+02 0.004 33.6 10.6 64 225-289 249-321 (890)
339 PLN02935 Bifunctional NADH kin 43.9 75 0.0016 34.6 7.4 78 4-90 193-295 (508)
340 COG1058 CinA Predicted nucleot 43.5 71 0.0015 31.7 6.7 49 15-63 20-75 (255)
341 cd01542 PBP1_TreR_like Ligand- 43.3 1.3E+02 0.0029 28.7 8.8 66 12-87 8-84 (259)
342 PRK00561 ppnK inorganic polyph 42.8 48 0.001 33.0 5.4 66 7-91 2-67 (259)
343 cd06324 PBP1_ABC_sugar_binding 42.7 1.3E+02 0.0028 30.0 8.8 67 12-87 8-88 (305)
344 cd06285 PBP1_LacI_like_7 Ligan 42.7 1.3E+02 0.0029 28.9 8.7 64 12-85 8-82 (265)
345 cd06316 PBP1_ABC_sugar_binding 42.7 1.1E+02 0.0023 30.2 8.2 72 8-87 2-87 (294)
346 PLN02727 NAD kinase 42.3 69 0.0015 37.5 7.2 78 4-91 677-777 (986)
347 cd06292 PBP1_LacI_like_10 Liga 42.1 1.1E+02 0.0024 29.6 8.0 71 12-87 8-89 (273)
348 TIGR01753 flav_short flavodoxi 42.0 1.3E+02 0.0029 25.9 7.8 39 15-55 9-52 (140)
349 PRK10355 xylF D-xylose transpo 41.6 1.2E+02 0.0026 30.9 8.5 74 6-87 26-112 (330)
350 PF10087 DUF2325: Uncharacteri 41.4 1.5E+02 0.0032 24.3 7.5 83 8-96 2-91 (97)
351 cd01425 RPS2 Ribosomal protein 41.2 1.5E+02 0.0032 28.0 8.3 73 6-88 57-157 (193)
352 PF13380 CoA_binding_2: CoA bi 41.2 1.6E+02 0.0035 25.2 7.9 85 7-92 2-114 (116)
353 cd06312 PBP1_ABC_sugar_binding 40.7 1.1E+02 0.0025 29.6 7.9 73 8-88 2-89 (271)
354 PRK11914 diacylglycerol kinase 40.1 1.1E+02 0.0024 30.9 7.9 57 5-61 8-77 (306)
355 cd06287 PBP1_LacI_like_8 Ligan 40.1 76 0.0017 31.1 6.5 60 18-87 26-85 (269)
356 cd06277 PBP1_LacI_like_1 Ligan 39.9 1.7E+02 0.0036 28.2 8.9 64 13-87 12-86 (268)
357 cd06284 PBP1_LacI_like_6 Ligan 39.7 1.2E+02 0.0027 28.9 8.0 66 12-88 8-84 (267)
358 cd06296 PBP1_CatR_like Ligand- 39.7 1.5E+02 0.0032 28.5 8.5 66 12-87 8-84 (270)
359 COG4977 Transcriptional regula 39.6 81 0.0018 32.5 6.6 48 49-97 77-124 (328)
360 PRK04885 ppnK inorganic polyph 39.3 77 0.0017 31.6 6.3 64 7-91 2-71 (265)
361 cd01400 6PGL 6PGL: 6-Phosphogl 39.1 37 0.00081 32.7 4.0 54 212-265 10-66 (219)
362 cd00758 MoCF_BD MoCF_BD: molyb 38.8 63 0.0014 28.3 5.1 43 17-59 20-69 (133)
363 cd06315 PBP1_ABC_sugar_binding 38.7 1.5E+02 0.0032 29.0 8.5 73 7-87 2-87 (280)
364 PF08497 Radical_SAM_N: Radica 38.7 22 0.00049 35.6 2.3 58 180-247 28-92 (302)
365 cd06289 PBP1_MalI_like Ligand- 38.6 1.8E+02 0.0038 27.8 8.9 67 12-87 8-85 (268)
366 PRK10014 DNA-binding transcrip 38.1 2.2E+02 0.0048 28.6 9.9 73 6-87 65-150 (342)
367 PRK14497 putative molybdopteri 37.4 83 0.0018 34.8 6.7 54 6-59 180-256 (546)
368 cd01539 PBP1_GGBP Periplasmic 37.4 92 0.002 31.1 6.8 68 12-87 8-88 (303)
369 PRK10703 DNA-binding transcrip 36.9 2.3E+02 0.005 28.5 9.8 72 6-87 60-145 (341)
370 cd01536 PBP1_ABC_sugar_binding 36.2 1.7E+02 0.0036 27.9 8.2 59 21-87 21-86 (267)
371 TIGR02634 xylF D-xylose ABC tr 35.9 91 0.002 31.2 6.4 63 17-87 16-85 (302)
372 cd06302 PBP1_LsrB_Quorum_Sensi 35.7 1.6E+02 0.0035 29.2 8.2 68 12-87 8-87 (298)
373 cd06306 PBP1_TorT-like TorT-li 35.5 1.1E+02 0.0024 29.8 6.8 67 12-87 8-87 (268)
374 cd06323 PBP1_ribose_binding Pe 35.2 1.4E+02 0.0031 28.5 7.6 68 12-87 8-86 (268)
375 cd06278 PBP1_LacI_like_2 Ligan 35.1 2.1E+02 0.0046 27.2 8.8 58 20-87 20-83 (266)
376 PRK09982 universal stress prot 35.0 3.1E+02 0.0066 23.9 9.9 36 224-259 3-41 (142)
377 PRK14690 molybdopterin biosynt 35.0 1E+02 0.0023 32.9 6.9 54 6-59 194-270 (419)
378 KOG1159 NADP-dependent flavopr 35.0 1.3E+02 0.0028 32.7 7.2 45 7-54 2-53 (574)
379 PRK10653 D-ribose transporter 34.9 2.1E+02 0.0046 28.2 8.9 74 6-87 27-113 (295)
380 PF06490 FleQ: Flagellar regul 34.3 25 0.00055 29.9 1.7 53 7-59 1-53 (109)
381 PRK02006 murD UDP-N-acetylmura 34.3 2E+02 0.0043 31.4 9.1 84 6-98 8-111 (498)
382 cd06308 PBP1_sensor_kinase_lik 34.2 1.5E+02 0.0032 28.6 7.6 69 12-88 8-88 (270)
383 cd06321 PBP1_ABC_sugar_binding 34.2 1.5E+02 0.0032 28.7 7.5 68 12-87 8-88 (271)
384 cd01989 STK_N The N-terminal d 33.9 3.1E+02 0.0067 23.7 8.9 34 226-259 1-37 (146)
385 PRK11303 DNA-binding transcrip 33.4 3E+02 0.0064 27.5 9.8 73 6-87 62-147 (328)
386 cd06271 PBP1_AglR_RafR_like Li 33.0 1E+02 0.0022 29.5 6.2 59 19-87 23-88 (268)
387 PRK04690 murD UDP-N-acetylmura 32.8 1.9E+02 0.0042 31.2 8.7 31 6-37 9-39 (468)
388 PRK03501 ppnK inorganic polyph 32.4 1.4E+02 0.0029 29.9 6.8 67 5-90 2-74 (264)
389 PF07085 DRTGG: DRTGG domain; 32.3 94 0.002 25.9 4.9 63 18-91 31-95 (105)
390 PRK14987 gluconate operon tran 32.1 2.9E+02 0.0064 27.7 9.6 72 6-87 64-148 (331)
391 cd06270 PBP1_GalS_like Ligand 31.8 2.6E+02 0.0056 26.9 8.8 66 12-87 8-84 (268)
392 PRK05723 flavodoxin; Provision 31.7 2.2E+02 0.0047 25.7 7.5 46 7-54 2-53 (151)
393 cd06267 PBP1_LacI_sugar_bindin 31.5 1.1E+02 0.0024 28.9 6.1 58 20-87 20-84 (264)
394 TIGR01481 ccpA catabolite cont 31.5 3.2E+02 0.007 27.3 9.7 72 6-87 60-144 (329)
395 TIGR01012 Sa_S2_E_A ribosomal 31.4 2.1E+02 0.0045 27.2 7.5 74 6-89 62-139 (196)
396 PRK00549 competence damage-ind 31.4 2.2E+02 0.0048 30.4 8.6 76 16-97 20-102 (414)
397 cd06322 PBP1_ABC_sugar_binding 31.4 1.9E+02 0.0042 27.7 7.8 68 12-87 8-86 (267)
398 cd06317 PBP1_ABC_sugar_binding 31.4 1.1E+02 0.0024 29.5 6.0 60 20-87 21-87 (275)
399 PRK01710 murD UDP-N-acetylmura 31.1 1.9E+02 0.0041 31.2 8.2 80 6-98 15-115 (458)
400 PRK01390 murD UDP-N-acetylmura 31.1 1.9E+02 0.004 31.1 8.2 75 6-86 10-98 (460)
401 cd06279 PBP1_LacI_like_3 Ligan 31.0 1.1E+02 0.0024 30.0 6.1 59 19-87 24-85 (283)
402 cd01537 PBP1_Repressors_Sugar_ 31.0 1.4E+02 0.0031 28.1 6.7 58 21-87 21-85 (264)
403 cd01523 RHOD_Lact_B Member of 30.9 75 0.0016 25.9 4.1 38 221-261 58-95 (100)
404 COG1609 PurR Transcriptional r 30.8 2E+02 0.0044 29.4 8.1 72 6-87 59-143 (333)
405 PRK15118 universal stress glob 30.7 3.5E+02 0.0076 23.3 9.7 36 224-259 3-41 (144)
406 PRK10116 universal stress prot 30.4 3.5E+02 0.0076 23.2 9.7 35 224-258 3-40 (142)
407 PRK14573 bifunctional D-alanyl 30.3 1.3E+02 0.0029 35.0 7.4 34 4-37 3-36 (809)
408 cd06293 PBP1_LacI_like_11 Liga 30.2 3.1E+02 0.0067 26.3 9.1 46 12-57 8-64 (269)
409 PTZ00254 40S ribosomal protein 30.1 2.5E+02 0.0054 27.7 8.0 73 6-88 72-148 (249)
410 PRK04020 rps2P 30S ribosomal p 29.9 2.9E+02 0.0062 26.5 8.2 73 6-88 68-144 (204)
411 PF07991 IlvN: Acetohydroxy ac 29.9 64 0.0014 29.7 3.6 33 6-39 5-37 (165)
412 TIGR03127 RuMP_HxlB 6-phospho 29.5 3.4E+02 0.0073 24.7 8.7 73 6-88 31-106 (179)
413 TIGR00640 acid_CoA_mut_C methy 29.5 2.4E+02 0.0051 24.9 7.2 71 6-81 3-81 (132)
414 TIGR00200 cinA_nterm competenc 29.4 1.6E+02 0.0035 31.4 7.1 44 16-59 20-70 (413)
415 cd05565 PTS_IIB_lactose PTS_II 29.4 2.1E+02 0.0046 23.9 6.4 23 226-248 2-24 (99)
416 cd06294 PBP1_ycjW_transcriptio 28.9 1.4E+02 0.0031 28.6 6.4 59 19-87 24-89 (270)
417 KOG1467 Translation initiation 28.9 1.6E+02 0.0036 31.7 6.8 80 6-89 386-469 (556)
418 cd01988 Na_H_Antiporter_C The 28.7 3.4E+02 0.0075 22.6 10.1 35 226-260 1-38 (132)
419 PF00532 Peripla_BP_1: Peripla 28.4 2.2E+02 0.0048 28.2 7.7 70 7-86 3-84 (279)
420 cd06297 PBP1_LacI_like_12 Liga 28.3 2.7E+02 0.0058 26.9 8.3 60 18-87 18-84 (269)
421 PRK01185 ppnK inorganic polyph 28.3 3.2E+02 0.0069 27.3 8.7 71 7-90 2-82 (271)
422 cd01574 PBP1_LacI Ligand-bindi 28.2 2.4E+02 0.0051 27.0 7.8 60 18-87 18-85 (264)
423 cd01422 MGS Methylglyoxal synt 28.1 1.6E+02 0.0034 25.2 5.7 66 18-85 33-105 (115)
424 cd01399 GlcN6P_deaminase GlcN6 28.1 1.1E+02 0.0025 29.2 5.4 68 215-282 9-87 (232)
425 PRK02472 murD UDP-N-acetylmura 28.0 3E+02 0.0064 29.3 9.1 30 6-36 6-35 (447)
426 PF02310 B12-binding: B12 bind 27.8 1.7E+02 0.0037 24.5 6.0 51 7-57 2-60 (121)
427 cd00887 MoeA MoeA family. Memb 27.5 1.6E+02 0.0035 31.1 6.8 54 6-59 169-245 (394)
428 cd05005 SIS_PHI Hexulose-6-pho 27.2 4.5E+02 0.0098 24.0 9.1 73 6-88 34-109 (179)
429 cd01451 vWA_Magnesium_chelatas 27.2 1.7E+02 0.0037 26.8 6.2 54 51-105 102-164 (178)
430 TIGR01198 pgl 6-phosphoglucono 27.1 87 0.0019 30.5 4.4 53 213-265 16-70 (233)
431 PRK09701 D-allose transporter 27.1 2.7E+02 0.0057 27.9 8.2 73 7-87 26-113 (311)
432 PRK15408 autoinducer 2-binding 27.0 2.2E+02 0.0048 29.2 7.6 75 6-88 24-112 (336)
433 PLN02360 probable 6-phosphoglu 26.8 98 0.0021 30.8 4.7 50 215-265 32-87 (268)
434 PF01513 NAD_kinase: ATP-NAD k 26.7 49 0.0011 33.3 2.6 37 46-91 74-110 (285)
435 COG0429 Predicted hydrolase of 26.7 1.2E+02 0.0025 31.3 5.2 77 12-99 87-167 (345)
436 PRK06696 uridine kinase; Valid 26.4 1.1E+02 0.0024 29.3 5.0 54 210-264 7-65 (223)
437 PRK03670 competence damage-ind 26.4 1.4E+02 0.003 29.6 5.6 45 16-60 20-72 (252)
438 PRK06455 riboflavin synthase; 26.3 2.3E+02 0.005 25.9 6.5 82 5-86 1-96 (155)
439 PRK10680 molybdopterin biosynt 26.3 1.8E+02 0.0039 31.0 6.9 54 6-59 178-254 (411)
440 COG1184 GCD2 Translation initi 26.1 3.2E+02 0.007 27.8 8.2 78 7-88 147-228 (301)
441 KOG3425 Uncharacterized conser 26.0 1.3E+02 0.0029 26.2 4.6 47 217-263 18-77 (128)
442 PF03853 YjeF_N: YjeF-related 26.0 1.7E+02 0.0038 26.7 6.0 68 215-284 14-86 (169)
443 PRK05395 3-dehydroquinate dehy 25.9 3.5E+02 0.0076 24.4 7.5 47 13-59 23-78 (146)
444 COG0521 MoaB Molybdopterin bio 25.7 1.3E+02 0.0029 27.8 5.0 43 18-60 29-79 (169)
445 TIGR02417 fruct_sucro_rep D-fr 25.3 5E+02 0.011 25.8 9.9 72 6-86 61-145 (327)
446 PTZ00372 endonuclease 4-like p 25.1 3.2E+02 0.0069 29.2 8.3 57 227-287 135-199 (413)
447 TIGR01082 murC UDP-N-acetylmur 24.7 2.6E+02 0.0055 30.0 7.9 79 8-98 2-96 (448)
448 PRK05928 hemD uroporphyrinogen 24.6 3.6E+02 0.0077 25.7 8.3 87 5-102 1-102 (249)
449 PRK06242 flavodoxin; Provision 24.6 2.9E+02 0.0062 24.2 7.0 47 7-58 2-52 (150)
450 PRK06027 purU formyltetrahydro 24.6 98 0.0021 31.2 4.3 54 224-288 89-146 (286)
451 COG1419 FlhF Flagellar GTP-bin 24.4 2.3E+02 0.005 30.1 7.0 66 230-298 210-279 (407)
452 COG4126 Hydantoin racemase [Am 24.4 1E+02 0.0022 29.8 4.1 21 81-101 91-111 (230)
453 PRK07178 pyruvate carboxylase 23.2 3E+02 0.0064 29.8 8.0 34 5-39 2-35 (472)
454 PRK02261 methylaspartate mutas 23.1 2.9E+02 0.0062 24.5 6.6 71 5-80 3-81 (137)
455 PRK05294 carB carbamoyl phosph 23.1 2.7E+02 0.0058 33.7 8.3 34 5-38 554-597 (1066)
456 KOG0649 WD40 repeat protein [G 23.1 1.5E+02 0.0031 29.3 4.8 123 47-189 69-211 (325)
457 TIGR00853 pts-lac PTS system, 22.5 3.6E+02 0.0078 22.2 6.6 63 224-288 3-84 (95)
458 cd00532 MGS-like MGS-like doma 22.4 2.4E+02 0.0053 23.7 5.8 64 20-85 33-103 (112)
459 PRK15395 methyl-galactoside AB 22.2 3.5E+02 0.0077 27.4 8.0 74 6-87 25-112 (330)
460 PRK08462 biotin carboxylase; V 22.2 3.1E+02 0.0067 29.3 7.9 83 4-90 3-85 (445)
461 cd02067 B12-binding B12 bindin 22.1 3.7E+02 0.008 22.6 7.0 39 19-57 17-59 (119)
462 cd01544 PBP1_GalR Ligand-bindi 22.0 2.5E+02 0.0053 27.2 6.6 58 18-87 23-80 (270)
463 COG1597 LCB5 Sphingosine kinas 21.9 2.3E+02 0.005 28.7 6.5 62 17-87 21-88 (301)
464 PF09508 Lact_bio_phlase: Lact 21.8 82 0.0018 35.2 3.2 157 21-181 470-642 (716)
465 cd05013 SIS_RpiR RpiR-like pro 21.8 3E+02 0.0066 23.2 6.5 76 6-88 14-94 (139)
466 TIGR03406 FeS_long_SufT probab 21.7 2.1E+02 0.0045 26.7 5.5 33 497-530 130-163 (174)
467 PF00994 MoCF_biosynth: Probab 21.7 1E+02 0.0022 27.3 3.4 44 16-59 17-67 (144)
468 TIGR03436 acidobact_VWFA VWFA- 21.4 1.2E+02 0.0026 30.3 4.3 34 71-104 184-237 (296)
469 PRK06015 keto-hydroxyglutarate 21.2 1.8E+02 0.004 27.7 5.2 81 6-88 5-104 (201)
470 PF03358 FMN_red: NADPH-depend 21.2 1.2E+02 0.0027 26.7 3.9 82 6-90 1-115 (152)
471 PRK04761 ppnK inorganic polyph 21.1 79 0.0017 31.2 2.7 36 47-91 24-59 (246)
472 cd06272 PBP1_hexuronate_repres 21.1 4.3E+02 0.0094 25.1 8.1 65 12-86 8-79 (261)
473 PF10742 DUF2555: Protein of u 21.1 59 0.0013 24.2 1.4 28 380-410 5-32 (57)
474 cd06313 PBP1_ABC_sugar_binding 21.0 2E+02 0.0042 28.0 5.7 68 12-87 8-86 (272)
475 PF01182 Glucosamine_iso: Gluc 20.9 89 0.0019 29.5 3.0 51 214-264 10-65 (199)
476 PRK08591 acetyl-CoA carboxylas 20.9 3.8E+02 0.0083 28.6 8.3 32 5-37 2-33 (451)
477 KOG1468 Predicted translation 20.7 1.4E+02 0.0031 29.8 4.3 47 235-285 221-273 (354)
478 TIGR00502 nagB glucosamine-6-p 20.6 1.9E+02 0.0042 28.5 5.5 43 224-266 32-81 (259)
479 TIGR01087 murD UDP-N-acetylmur 20.6 3.9E+02 0.0085 28.3 8.3 79 7-98 1-100 (433)
480 cd06286 PBP1_CcpB_like Ligand- 20.6 5.7E+02 0.012 24.2 8.9 46 12-57 8-64 (260)
481 cd05017 SIS_PGI_PMI_1 The memb 20.5 5.1E+02 0.011 21.8 7.5 73 8-89 2-78 (119)
482 PRK09590 celB cellobiose phosp 20.3 2.2E+02 0.0048 24.0 5.0 24 225-248 2-25 (104)
483 PRK13054 lipid kinase; Reviewe 20.3 2.6E+02 0.0057 28.1 6.5 57 5-61 3-69 (300)
484 PRK08057 cobalt-precorrin-6x r 20.3 3.3E+02 0.0072 26.8 7.0 51 5-59 2-52 (248)
485 cd06291 PBP1_Qymf_like Ligand 20.0 4.5E+02 0.0097 25.0 8.0 46 12-57 8-64 (265)
486 cd04795 SIS SIS domain. SIS (S 20.0 2.7E+02 0.0058 21.5 5.3 73 9-88 2-81 (87)
No 1
>PLN02347 GMP synthetase
Probab=100.00 E-value=1.2e-138 Score=1113.80 Aligned_cols=525 Identities=81% Similarity=1.298 Sum_probs=493.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|++|++|++++++|++.+.+++...++|||||||||+++++.+.|++...+++.+.+.++|||
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPIL 90 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVL 90 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEE
Confidence 57999999999999999999999999999999988888755689999999999999988788888888888888899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|++++||+|.+...+++|++.+++..++++|+++++...+.+|++|+|.+..+|++|+++|++++|.++|++
T Consensus 91 GIClG~QlLa~alGG~V~~~~~~e~G~~~v~i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~ 170 (536)
T PLN02347 91 GICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCGSQLFGDLPSGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIE 170 (536)
T ss_pred EECHHHHHHHHHcCCEEEecCCcccceEEEEEcCCChhhhcCCCCceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Confidence 99999999999999999998888999999998888899999876433789999999999999999999999999999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHH
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVH 245 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~ 245 (531)
+.++++||+|||||+++++.|.+||+||++++|+|+++|+|.+++++.++.+++.+++.+++++||||||||+|+|++++
T Consensus 171 ~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~ 250 (536)
T PLN02347 171 NRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVH 250 (536)
T ss_pred ECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcchHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhh
Q 039743 246 KAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQ 325 (531)
Q Consensus 246 k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~ 325 (531)
+++|++++|+|+|+|+++.+|.+++.+.+|+++|++++++|+++.|++.|++++||++||++||+.|+++|.+++++++.
T Consensus 251 ~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~fl~~l~~~~~pe~k~~~~~~~f~~~f~~~~~~~~~ 330 (536)
T PLN02347 251 KAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERFLSKLKGVTDPEKKRKIIGAEFIEVFDEFAHKLEQ 330 (536)
T ss_pred HHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHHHHhhCCCCCChHHhcchhCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999987779999999999999999999999999999999999999999999999977754
Q ss_pred hcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 326 KLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 326 ~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
..+.+.++|+|||+|||++||...+|.++.++++||||||++++++....++++||++++|+|||++|+++|||.+++|+
T Consensus 331 ~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~ 410 (536)
T PLN02347 331 KLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKR 410 (536)
T ss_pred hhCCCCcEEccCCcccccccccCCCCCccccccceeeecccccChHHHHCccccchhhCcHHHHHHHHHHcCCCHHHhcC
Confidence 34434689999999999999743233222458899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCcch-HHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecC
Q 039743 406 HPFPGPGLAVRVLGDVTEGN-SLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQ 484 (531)
Q Consensus 406 ~P~~~p~la~r~~g~vt~~~-l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~ 484 (531)
+||||||||+||+|+++.++ | +++++||.+++++|++.|||+++||+|+||||+||||||||+|+|+|+++||+|+|.
T Consensus 411 ~p~p~p~La~Ri~g~~~~~~~l-~~~~~ad~i~~~~~~~~~~~~~~~q~~~~l~p~~~vgv~~d~r~y~~~~~lr~v~~~ 489 (536)
T PLN02347 411 HPFPGPGLAVRVLGDVTEGNAL-DILRQVDEIFINSIKDAGLYDEIWQAFAVFLPVKSVGVQGDQRTHSHVVALRAVTSE 489 (536)
T ss_pred CCcCCCCEEeeeCCccCCHHHH-HHHHHHHHHHHHHHHHcCCccccceeeEEEeCccccccCCCCCcccceEEEEEeccC
Confidence 99999999999999887766 7 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 485 DGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 485 d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|||||+|+++||++|++|++||+|+++||||||||+|||||||||||
T Consensus 490 d~mta~~~~~~~~~l~~~~~~i~~~~~~v~rv~yd~t~kpp~tie~e 536 (536)
T PLN02347 490 DGMTADWYHFEHKFLDDVSRKICNEVRGVNRVVYDITSKPPSTIEWE 536 (536)
T ss_pred ccCCCCcccCCHHHHHHHHHHHhhcCCCcceEEeeCCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999998
No 2
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=2.7e-133 Score=1076.26 Aligned_cols=509 Identities=56% Similarity=0.951 Sum_probs=483.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
++++|+|||||+||+++++|+||++|++++++|++.+.+++...++|||||||||+++++...++....+++ .++|
T Consensus 2 ~~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i~~----~~~P 77 (511)
T PRK00074 2 HHDKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEIFE----LGVP 77 (511)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCCccccHHHHh----CCCC
Confidence 346899999999999999999999999999999988877775557899999999999998877776665554 4999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~a 163 (531)
|||||+|||+|++++||+|.+...+++|++.++++.++++|+++++. +.+|++|+|.|.++|++++++|.+++++++|
T Consensus 78 vLGIC~G~QlLa~~lGG~V~~~~~~e~G~~~i~i~~~~~Lf~~l~~~--~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~a 155 (511)
T PRK00074 78 VLGICYGMQLMAHQLGGKVERAGKREYGRAELEVDNDSPLFKGLPEE--QDVWMSHGDKVTELPEGFKVIASTENCPIAA 155 (511)
T ss_pred EEEECHHHHHHHHHhCCeEEecCCcccceEEEEEcCCChhhhcCCCc--eEEEEECCeEEEecCCCcEEEEEeCCCCEEE
Confidence 99999999999999999999998899999999998888999999887 9999999999999999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHH
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l 243 (531)
+++.++++||+|||||+++++.|.+||+||++++|+|+++|+|++++++.++.|++.++ +++++||+|||+||+|+|++
T Consensus 156 i~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~~v~-~~~vlva~SGGvDS~vll~l 234 (511)
T PRK00074 156 IANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAVL 234 (511)
T ss_pred EEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhcC-CCcEEEEeCCCccHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999998 68999999999999999999
Q ss_pred HHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHh
Q 039743 244 VHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL 323 (531)
Q Consensus 244 ~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~ 323 (531)
+++++|.+++|+|+|+|+++.+|.+++.+.+|+++|++++++|+++.|++.++++++|+.+|++||+.|+++|.+.|++.
T Consensus 235 l~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~ 314 (511)
T PRK00074 235 LHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKL 314 (511)
T ss_pred HHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHc
Confidence 99999999999999999998888889887788999999999999999998888999999999999999999999999998
Q ss_pred -hhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccc
Q 039743 324 -EQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQF 402 (531)
Q Consensus 324 -g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~ 402 (531)
| +++|++|||+||++|+.... + ++.+|+|||++|+++....++++||.+++|+|||++|+++|||.++
T Consensus 315 ~g------~~~latGhn~dD~~Et~~~~-~----~~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~ 383 (511)
T PRK00074 315 GG------VKFLAQGTLYPDVIESGGTK-K----AATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEI 383 (511)
T ss_pred cC------CCEEEECCCcchhhhhcCCC-C----ccccccccCccCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHH
Confidence 6 89999999999999986443 5 6799999999999988888999999999999999999999999999
Q ss_pred cccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeee
Q 039743 403 LKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVT 482 (531)
Q Consensus 403 ~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~ 482 (531)
+|++|||+||||+|++|++|+|+| +++++||++++++|++.|+|+++||+|+||||+||||||||.|+|+|+++||+|+
T Consensus 384 ~~~~p~p~~~la~Ri~g~it~e~l-~~~~~ae~~~~~~~~~~~~~~~~~q~~~vl~p~~~vgv~gd~r~y~~~~~lr~~~ 462 (511)
T PRK00074 384 VYRHPFPGPGLAIRILGEVTKEKL-DILREADAIFIEELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYDYVVALRAVT 462 (511)
T ss_pred hCCCCCCCCceeeEEecccCHHHH-HHHHHHHHHHHHHHHHcCCccCcceeeEEEeCcceeeeCCCCCccceEEEEEEEc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 483 SQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 483 ~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|.|||||+|+++||++|++|++||+|++||||||+||+|||||||||||
T Consensus 463 ~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~yd~~~kpp~tie~e 511 (511)
T PRK00074 463 SIDGMTADWARLPYDFLEKISNRIINEVKGVNRVVYDITSKPPATIEWE 511 (511)
T ss_pred ccCccccCCccCCHHHHHHHHHHHhhcCCCcceEEEECCCCCCCCccCC
Confidence 9999999999999999999999999999999999999999999999998
No 3
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7e-133 Score=992.55 Aligned_cols=519 Identities=51% Similarity=0.824 Sum_probs=496.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
..++|+|||||+||.++|.|++|++.++++++|.+++...+...+|.||||||||.|+|++++|++++++|++ ++|
T Consensus 15 ~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~----~vp 90 (552)
T KOG1622|consen 15 YFDTILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL----GVP 90 (552)
T ss_pred cCceEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc----CCc
Confidence 3478999999999999999999999999999999999988877899999999999999999999999999999 999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~a 163 (531)
|||||||||+|++.+||+|.+...+|+|...|.+.....+|+++.......||++|+|.+..+|+||++.|.+.+.++++
T Consensus 91 vLGICYGmQ~i~~~~Gg~V~~~~~RE~G~~eI~v~~~~~lF~~~~~~~~~~VlltHgdsl~~v~~g~kv~a~s~n~~va~ 170 (552)
T KOG1622|consen 91 VLGICYGMQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSGLHKTEFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAG 170 (552)
T ss_pred ceeehhHHHHHHHHhCCccccccccCCCCceEEcCchhhhhhhhcccceeeeeeccccchhhccccceeEEeecCcceee
Confidence 99999999999999999999999999999999998887899998876323599999999999999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHH
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l 243 (531)
+.+..+++||+|||||+++++.|.++++||++++|+|.++|+|+++.++.+++|+++++ +.+|++++|||+||+||++|
T Consensus 171 i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e~I~~i~k~vG-~~~Vl~~vSGgvdStV~a~L 249 (552)
T KOG1622|consen 171 ILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEECINEIRKWVG-DYKVLVAVSGGVDSTVCAAL 249 (552)
T ss_pred ehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHHHHHHHHHHhc-ccceEEEecCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHH
Q 039743 244 VHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHD 322 (531)
Q Consensus 244 ~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~ 322 (531)
+++|+| .+++|+++|||++++.|.+.+++.+.+ |||++.++|+++.|.++|++++|||+||+++|++|++++...+.+
T Consensus 250 l~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~~f~s~L~~~~dPE~KRkiIG~tfikv~~~~~~~ 328 (552)
T KOG1622|consen 250 LRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASETFLSKLKGVTDPEEKRKIIGRTFIKVFDPVASE 328 (552)
T ss_pred HHHhhCCCceEEEEecccchhhhHHHHHHHHHHH-cCCceEEeechHHHHHhhcccCCHHHhceecccceeeeCcHHHHH
Confidence 999999 999999999999999999999988876 999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc-cc-ceecccccCCHHHHHHHHHHcCCCc
Q 039743 323 LEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM-KL-KLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 323 ~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~-~~-~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
+..+.+....+++|||++||++||++++|+| ++++||||||++++.+.+ .. ++++||.+++|||||++++.+|+|.
T Consensus 329 l~~k~~~~~~flaQgtL~Pd~ieS~s~~g~~--~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~lgk~lGlp~ 406 (552)
T KOG1622|consen 329 LNKKHGEKESFLAQGTLRPDLIESASVYGSG--HAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVRELGKDLGLPE 406 (552)
T ss_pred hhhccCccceeeecccccchhhhhccccCCc--hhhhhhcccccchHHHHHHHhcccCchhHHHHHHHHHHhhhhcCCch
Confidence 8876665567999999999999999999885 799999999999998876 44 8999999999999999999999999
Q ss_pred cccccCCCCCCCccccccCCCCc---chHHHHHhhhhHHHHHHHH-HcCcccccccce---eeecCcceeeecCCCceee
Q 039743 401 QFLKRHPFPGPGLAVRVLGDVTE---GNSLDILRQVDEIFIQSIK-EAGLYDLIWQAF---AVFLPVRSVGVQGDQRTHS 473 (531)
Q Consensus 401 ~~~~~~P~~~p~la~r~~g~vt~---~~l~~~~~~~d~~~~~~l~-~~~~~~~~~q~~---~vllp~~~~gv~gd~r~~~ 473 (531)
+++|||||||||||+|++|.++. ..+ +.++++++++++.|+ ..|+|+++||+| |.+||+||||||||+|+|+
T Consensus 407 ~Lv~rhPfpGPgLaIRvL~~~~~~~~~~~-~ii~~~~~~f~~~i~~~~glye~i~q~f~~~A~llpirtvGVqgDkrsys 485 (552)
T KOG1622|consen 407 SLVPRHPFPGPGLAIRVLCAVTARDLPQL-EIIRKVDRIFIKSIRKDHGLYERIIQAFQIPARLLPIRTVGVQGDKRSYS 485 (552)
T ss_pred hhhccCCCCCCCeEEEEeeccccccchHH-HHHHHHHHHHHHHhcccchhHHHHHhhccCcceecceeeeeeecccceec
Confidence 99999999999999999999988 666 899999999999999 889999999999 9999999999999999999
Q ss_pred eEEEE-----EeeecCCCccccccc----ccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 474 HVVAL-----RAVTSQDGMTADWYY----FEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 474 ~~~~l-----r~~~~~d~mt~~~~~----~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|+|+| |++.|+|||||+|+. +|.++|.+++++|+|+|+|||||+||+|||||||+|||
T Consensus 486 ~vialPPr~~R~~~t~DFMTg~p~~pg~e~p~k~l~kmvt~I~nkv~GIsRVlyDlTSKPPgTtEWE 552 (552)
T KOG1622|consen 486 YVIALPPRPLRAFTTSDFMTGDPATPGNEFPVKFLLKMVTEICNKVPGISRVLYDLTSKPPGTTEWE 552 (552)
T ss_pred eEEecCCccccceecccccccCCCCCCccccHHHHHHHHHHHHhcCccHHHHHhhcccCCCCCcCCC
Confidence 99999 999999999999997 99999999999999999999999999999999999999
No 4
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.3e-111 Score=795.04 Aligned_cols=315 Identities=62% Similarity=1.009 Sum_probs=309.5
Q ss_pred cccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcE
Q 039743 203 GWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPV 282 (531)
Q Consensus 203 ~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~ 282 (531)
+|+|.+|+++.++.||++++ ++++++|+||||||+|+|.|+++|+|++++|+|+|||++|++|.+++.+.+.+++|+++
T Consensus 1 ~w~~~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl 79 (315)
T COG0519 1 MWTMENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNL 79 (315)
T ss_pred CCCHHHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCce
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc
Q 039743 283 TCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS 362 (531)
Q Consensus 283 ~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt 362 (531)
..||+++.|++.++|++|||+||+++|+.|+++|+++|++++ ++||+|||+|||++||+ .|+ +.+|||
T Consensus 80 ~~VdA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VFe~ea~k~~------~~~LaQGTiYpDvIES~--~g~----~~~IKS 147 (315)
T COG0519 80 IVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLG------AEFLAQGTIYPDVIESG--TGK----AGTIKS 147 (315)
T ss_pred EEEchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCC------cceEEecccccceeeec--CCC----CCcccc
Confidence 999999999999999999999999999999999999999998 89999999999999986 344 689999
Q ss_pred ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHH
Q 039743 363 HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIK 442 (531)
Q Consensus 363 ~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~ 442 (531)
|||+||+|+.+++++++||++|||||||++|++||||.+++||||||||||++|++|++|+|+| +++|+||.|++++|+
T Consensus 148 HHNVGGLP~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ekl-~ilR~Ad~I~~eEl~ 226 (315)
T COG0519 148 HHNVGGLPEDMKLKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREKL-EILREADAIVEEELR 226 (315)
T ss_pred ccccCCCccccceeeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCCCCCeEEEeecccCHHHH-HHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCC
Q 039743 443 EAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITS 522 (531)
Q Consensus 443 ~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~ 522 (531)
+.|+|+++||+|+||||+||||||||+|+|+|+++||+|+|.|||||||+++||++|+++|+||+||||+||||||||||
T Consensus 227 ~agly~~~wQaFavll~vksvGV~GD~RtY~~~valRaV~s~D~MTa~~~~lp~~~L~~is~RI~nEv~~V~RVvYDIts 306 (315)
T COG0519 227 KAGLYDKIWQAFAVLLPVKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPYDVLEKISNRITNEVPGVNRVVYDITS 306 (315)
T ss_pred hcCcchhhhHHHhhccccceeeecCCCcccCceEEEEEEecccccccccccCCHHHHHHHHHHhhhcCCCcceEEeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccC
Q 039743 523 KPPSTIEWE 531 (531)
Q Consensus 523 k~p~~~~~~ 531 (531)
|||||||||
T Consensus 307 KPPaTIEwE 315 (315)
T COG0519 307 KPPATIEWE 315 (315)
T ss_pred CCCCCccCC
Confidence 999999998
No 5
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=100.00 E-value=1.3e-89 Score=692.34 Aligned_cols=311 Identities=63% Similarity=1.021 Sum_probs=295.8
Q ss_pred chhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 208 NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
+|+++.++.|++.++ +++++||+|||+||+|+|+++++++|.+++|+|+|+|+++.+|.+++.+.+|+++|++++++|+
T Consensus 1 ~~~~~~~~~l~~~v~-~~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~ 79 (311)
T TIGR00884 1 NFIEEAVEEIREQVG-DAKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDA 79 (311)
T ss_pred ChHHHHHHHHHHHhC-CCcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeC
Confidence 367888999999998 5899999999999999999999999999999999999999999988887667789999999999
Q ss_pred chHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccC
Q 039743 288 TDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 288 ~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~ 367 (531)
++.|++.++++++|+.+|++|++.|+++|.++|+++|. +++|++||++||++|+.. |+ +++|++|||++
T Consensus 80 ~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~-----~~~la~Gt~~dD~~Es~~--G~----~~~iks~~~~~ 148 (311)
T TIGR00884 80 KERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGD-----AEYLAQGTIYPDVIESAA--GT----AHVIKSHHNVG 148 (311)
T ss_pred cHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCC-----CCEEEECCCChhhhhhcc--Ch----hHhhhccCccc
Confidence 99999888889999999999999999999999998762 689999999999999642 44 67899999999
Q ss_pred CCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcc
Q 039743 368 GLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLY 447 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~ 447 (531)
++++...+++++||.+++|+|||++|+++|||.+++|++||||||||+||+|++|+|+| +++++||++++++|++.|+|
T Consensus 149 gl~~~~~~~ii~PL~~l~K~EVr~la~~lgLp~~~~~~~Pf~~p~La~Ri~g~it~e~l-~~~~~ae~~~~~~~~~~~~~ 227 (311)
T TIGR00884 149 GLPEDMKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPFPGPGLAVRVLGEVTKEKL-EILRRADAIVIEELKKAGLY 227 (311)
T ss_pred cCChhhcCceEEEcccCcHHHHHHHHHHcCCCHHHhhCCCCCCCceEeeeecccCHHHH-HHHHHHHHHHHHHHHHcCCc
Confidence 99988889999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCC
Q 039743 448 DLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPST 527 (531)
Q Consensus 448 ~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~ 527 (531)
+++||+|+||||+||||||||+|||+|+++||+|+|.|||||+|+++||++|++|++||+|++||||||+||||||||||
T Consensus 228 ~~~~q~~~~llp~~~vgv~gd~r~y~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~v~~v~rv~ydi~~kpp~t 307 (311)
T TIGR00884 228 DKVWQAFAVLLPVKSVGVMGDGRTYGYVIALRAVESIDGMTADWARLPYDFLERISNRITNEVPGVNRVVYDITSKPPAT 307 (311)
T ss_pred cccccceEEEeCccccccCCCCCcccceEEEEEEecCCccccCcccCCHHHHHHHHHHHhhcCCCcceEEeeCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 039743 528 IEWE 531 (531)
Q Consensus 528 ~~~~ 531 (531)
||||
T Consensus 308 ~e~e 311 (311)
T TIGR00884 308 IEWE 311 (311)
T ss_pred ccCC
Confidence 9998
No 6
>PRK00919 GMP synthase subunit B; Validated
Probab=100.00 E-value=4.5e-89 Score=683.14 Aligned_cols=306 Identities=51% Similarity=0.829 Sum_probs=292.7
Q ss_pred ccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 204 w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
.+|.+|+++.++.|++.++ +++++||||||+||+++|+++++++|++++|+|+|+|+++.+|.+.+.+ +|+++ ++++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~-~~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~-~~~~~-i~~~ 78 (307)
T PRK00919 2 VDPEKFIEEAIEEIREEIG-DGKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKE-TFSDM-LNLR 78 (307)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHH-HHhcc-CCcE
Confidence 4688999999999999998 5999999999999999999999999999999999999999889999887 67777 9999
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++|+++.|++.++++++|+.+|++|++.|+++|.++|+++| +++|++|||+||++|+ ++ .+++|
T Consensus 79 vvd~~e~fl~~L~~v~npe~rr~~c~r~~~~~~~~~A~~~g------~~~Ia~Gtn~dD~iE~----r~------~iks~ 142 (307)
T PRK00919 79 IVDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIG------AEYLVQGTIAPDWIES----EG------GIKSH 142 (307)
T ss_pred EEECCHHHHHhccCCCChHHhhhHHHHHHHHHHHHHHHHcC------CCEEEECCCCcchhhc----cC------ccccc
Confidence 99999888888888999999999999999999999999988 8999999999999995 33 37999
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHH
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKE 443 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~ 443 (531)
||++++++..++++++||++++|+|||++|+++|||..+++|+|||+||||+||+|++|+|+| +++++||++++++|++
T Consensus 143 ~nv~gl~~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~~~~r~p~~~pcLa~Ri~g~vt~e~l-~~v~~ae~~~~~~~~~ 221 (307)
T PRK00919 143 HNVGGLPEGMVLKIVEPLRDLYKDEVREVARALGLPEEISERMPFPGPGLAVRIIGEVTEEKL-EIVREANAIVEEEVEK 221 (307)
T ss_pred ccccccChhhcCCcccCchhCcHHHHHHHHHHcCCChhhhCCCCCCCCceeEEeecccCHHHH-HHHHHHHHHHHHHHHh
Confidence 999999988889999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCC
Q 039743 444 AGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSK 523 (531)
Q Consensus 444 ~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k 523 (531)
.|+|+ ||+|+||+|+||||||||+|||+|+|+||+|+|.|||||||+++||++|+++|+||+|||+||||||||||||
T Consensus 222 ~~~~~--~q~~~~~~~~~~~g~~g~~r~~~~~~~~r~~~~~d~mta~~~~~~~~~l~~~~~~i~~~~~~~~~v~~~~~~k 299 (307)
T PRK00919 222 YGPDK--WQYFAALLGVKATGVKGDNRVYGWIVAVRAVESRDGMTADAPELPWEVLQRISSRITSEIPEVARVVYDITPK 299 (307)
T ss_pred cCCcc--cceEEEEcCceeeeecCCccccCceEEEEEEccCCCcccCcccCCHHHHHHHHHHhcccCCCceeeecCCCCC
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccC
Q 039743 524 PPSTIEWE 531 (531)
Q Consensus 524 ~p~~~~~~ 531 (531)
||||||||
T Consensus 300 pp~tie~~ 307 (307)
T PRK00919 300 PPATIEFE 307 (307)
T ss_pred CCCcccCC
Confidence 99999998
No 7
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=100.00 E-value=2.2e-87 Score=669.89 Aligned_cols=294 Identities=65% Similarity=1.004 Sum_probs=280.3
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhhcCCCCcccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKLKGVIDPETK 304 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l~~~~~p~~k 304 (531)
|++||+|||+||+++|+++++++|.+++|+|+|+|+++.+|.+++.+ +|+++++ +++++|+++.|++.+.++.||+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~-~~~~~g~i~~~vvd~~e~fl~~l~~v~npe~r 79 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEE-LFSKLLGINLIVVDASERFLSALKGVTDPEEK 79 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHH-HHHHhCCCcEEEEcCcHHHHHHhcCCCCHHHH
Confidence 68999999999999999999999999999999999999889988887 7777776 999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccC
Q 039743 305 RKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLL 384 (531)
Q Consensus 305 r~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l 384 (531)
|++||+.|++++.+.|+++|. +++|++|||+||++|+.+.... +++||+|||++|+++..++++++||.++
T Consensus 80 r~~~g~~~~~~l~~~A~~~g~-----~~~Ia~Gh~~dD~~Es~~~~~~----~~~IKs~~n~~Gl~a~~~~~vi~PL~~l 150 (295)
T cd01997 80 RKIIGETFIEVFEEEAKKLGL-----AEYLAQGTLYPDVIESGSGKGS----ADTIKSHHNVGGLPEDMKLKLIEPLRDL 150 (295)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCEEEECCcccchhhhcccccc----cccccccccccccchHhhCCcccccccC
Confidence 999999999999999998862 6899999999999998654333 6899999999999988889999999999
Q ss_pred CHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceee
Q 039743 385 FKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVG 464 (531)
Q Consensus 385 ~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~g 464 (531)
+|+|||++|+++|||.+++|++||||||||+|++|++|+|+| +++++||++++++|++.|+|+++||+|++|||+||||
T Consensus 151 ~K~EVR~lar~lGLp~~~~~~~Pfp~p~La~Ri~g~it~e~l-~~~~~ae~~~~~~~~~~~~~~~~~q~~~~~~~~~~vg 229 (295)
T cd01997 151 FKDEVRELGRELGLPEEIVERHPFPGPGLAVRILGEVTEEKL-EILREADAIVEEELEKAGLYDKIWQAFAVLLPIKSVG 229 (295)
T ss_pred cHHHHHHHHHHcCCCchhhCCCCCCCCcceeEEecCCCHHHH-HHHHHHHHHHHHHHHhcCcccccceeeEEeeCccccc
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCccc
Q 039743 465 VQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530 (531)
Q Consensus 465 v~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~ 530 (531)
||||+|||+|+++||+|+|.|||||+|+++||++|++|++||+|+|||||||||||||||||||||
T Consensus 230 v~gd~r~y~~~~~~r~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~~~~v~~d~~~kpp~t~e~ 295 (295)
T cd01997 230 VMGDQRTYGYVVALRAVESSDFMTADWARLPYEVLEKISNRITNEVPGVNRVVYDITSKPPATIEW 295 (295)
T ss_pred ccCCccccccEEEEEEEccCCcccCCCccCCHHHHHHHHHHhhccCCCeeeeecCCCCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
No 8
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=342.11 Aligned_cols=192 Identities=38% Similarity=0.565 Sum_probs=170.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCC-CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLS-ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G-~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~ 81 (531)
|++|+|+|||+||+++|+|++|++| +++++.|++.+.+++...++||+||||||.|+|+++ .+.....++ .+...+
T Consensus 1 ~~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~-~~~~p~ 79 (198)
T COG0518 1 MRKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIK-DAGVPG 79 (198)
T ss_pred CcEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHH-HhCCCC
Confidence 4679999999999999999999999 999999999998888778889999999999999987 333233333 333345
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEec-CCccccCCCCCceE-EEEeeccCccccCCCCcEEEEEeCCC
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVER-SSGIFGNKKVGHHQ-VVWMSHGDEAVVLPDGFEVVARSQQG 159 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~-~~~l~~~~~~~~~~-~v~~~H~~~v~~lp~g~~vla~s~~~ 159 (531)
+||||||||||+||.++||+|.++..+|||+.++++++ .+++|++++.. + .|||||+|.+.+||+||+++|+|++|
T Consensus 80 ~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v~~~~~~~~l~~gl~~~--~~~v~~sH~D~v~~lP~g~~vlA~s~~c 157 (198)
T COG0518 80 KPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDDPLFAGLPDL--FTTVFMSHGDTVVELPEGAVVLASSETC 157 (198)
T ss_pred CCEEEEChhHHHHHHHhCCEEeccCCCccceEEEEEecCccccccCCccc--cCccccchhCccccCCCCCEEEecCCCC
Confidence 56999999999999999999999988999999999984 45799999887 6 59999999999999999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
+++||++. +++||+|||||++| +.|.++++||..++|++.
T Consensus 158 p~qa~~~~-~~~~gvQFHpEv~~-~~~~~~l~nf~~~i~~~~ 197 (198)
T COG0518 158 PNQAFRYG-KRAYGVQFHPEVTH-EYGEALLENFAHEICGEE 197 (198)
T ss_pred hhhheecC-CcEEEEeeeeEEeH-HHHHHHHHHhhhhhcccC
Confidence 99999987 89999999999999 899999999998888764
No 9
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=100.00 E-value=6.2e-45 Score=295.69 Aligned_cols=93 Identities=67% Similarity=1.035 Sum_probs=84.3
Q ss_pred HHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEE
Q 039743 438 IQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVV 517 (531)
Q Consensus 438 ~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~ 517 (531)
+++|++.|+|+++||+|++|||+||||||||+|+|+|+++||+|+|+|||||+|+++||++|++|++||+|++|||||||
T Consensus 1 ~ee~~~~~l~~~~~Q~~avllpvrsvGV~GD~RtY~~~vvlR~v~s~D~MTa~~~~~p~~~L~~is~~I~n~v~~V~RV~ 80 (93)
T PF00958_consen 1 IEELKKAGLYDKIWQAFAVLLPVRSVGVQGDQRTYGYVVVLRAVESEDFMTADWARLPWELLEEISSRITNEVPGVNRVV 80 (93)
T ss_dssp -HHHHHTTHGGGSSEEEEEEEEEEEEECCTTTCEEEEEEEEEEEEESSSSSEEE-TB-HHHHHHHHHHHHHHSTTEEEEE
T ss_pred CHHHHhcCcccchhhceEEEcCCCcccccCCccceeeeEEEEEeecccccccccccCCHHHHHHHHHHHHHcCCCccEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCccc
Q 039743 518 QDITSKPPSTIEW 530 (531)
Q Consensus 518 ~d~~~k~p~~~~~ 530 (531)
||+|+||||||||
T Consensus 81 yDiT~KPP~TiEw 93 (93)
T PF00958_consen 81 YDITSKPPATIEW 93 (93)
T ss_dssp EE---BTTS-SS-
T ss_pred EeccCCCCCCccC
Confidence 9999999999999
No 10
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=100.00 E-value=3.3e-39 Score=305.81 Aligned_cols=188 Identities=47% Similarity=0.806 Sum_probs=169.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
|+|||+|++|+.+++++++++|++++++|++.+.+++...++|||||+||+.++++... ..+++.+.+.++|+|||
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~~~----~~~i~~~~~~~~PilGI 76 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENA----PRADEKIFELGVPVLGI 76 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcCCc----hHHHHHHHhCCCCEEEE
Confidence 68999999999999999999999999999987766664445679999999999887642 34566677779999999
Q ss_pred eHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEEC
Q 039743 88 CYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENR 167 (531)
Q Consensus 88 C~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~ 167 (531)
|+|||+|+.++||+|.+.+.+++|+..++++..+++|.++++. +.++++|+|.+.++|++++++|++++++++|+++.
T Consensus 77 C~G~Qll~~~lgg~v~~~~~~~~g~~~v~~~~~~~l~~~~~~~--~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~ 154 (188)
T TIGR00888 77 CYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRGLPDE--STVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHE 154 (188)
T ss_pred CHHHHHHHHhcCceEecCCCccceeEEEEEecCCHhhcCCCCC--cEEEeEccceeecCCCCCEEEEECCCCCeEEEEEC
Confidence 9999999999999999998899999999998888999999887 89999999999999999999999999999999998
Q ss_pred CCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 168 EKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 168 ~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
+.++||+|||||+++++.|.+||+||+.+.|+|+
T Consensus 155 ~~~~~g~QfHPE~~~~~~g~~i~~~f~~~~~~~~ 188 (188)
T TIGR00888 155 EKPIYGVQFHPEVTHTEYGNELLENFVYDVCGCE 188 (188)
T ss_pred CCCEEEEeeCCccCCChhhHHHHHHHHHHhhCCC
Confidence 7799999999999998899999999995589874
No 11
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=5.6e-38 Score=295.65 Aligned_cols=181 Identities=52% Similarity=0.899 Sum_probs=162.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
|+|+|+|++|+.++.++|+++|..++++|++.+.++....++||||||||+.++++...+++.+.++ +.++|+|||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~----~~~~PilGI 76 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIF----ELGVPVLGI 76 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccccchhhHHHH----hcCCCEEEE
Confidence 6899999999999999999999999999988765543457899999999999988765455444443 459999999
Q ss_pred eHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEEC
Q 039743 88 CYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENR 167 (531)
Q Consensus 88 C~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~ 167 (531)
|+|||+|+.++||+|.+...+++|+..++....+++|+++++. +.++++|++.|..+|++++++|.++++.++|+++.
T Consensus 77 C~G~Qll~~~~gg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~--~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~ 154 (181)
T cd01742 77 CYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGLPDE--QTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANE 154 (181)
T ss_pred cHHHHHHHHhcCCeEEeCCCCcceEEEEEecCCChhhcCCCCc--eEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeC
Confidence 9999999999999999998889999999887788999999887 99999999999999999999999999999999998
Q ss_pred CCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 168 EKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 168 ~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.++||+|||||++.++.|.++|+||+
T Consensus 155 ~~~~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 155 EKKIYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred CCcEEEEEcCCccccCcChHHHHHhhC
Confidence 779999999999999889999999994
No 12
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=5.5e-38 Score=297.50 Aligned_cols=182 Identities=23% Similarity=0.335 Sum_probs=159.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||+|++|+++++++|+++|+++++++.+. +.+++...++|||||+|||+++++.. ....+++. .++++|+|
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~---~~~~i~~~-~~~~~PiL 76 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSG---ISLDVISS-YAPYIPIL 76 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCc---chHHHHHH-hcCCCcEE
Confidence 399999999999999999999999999999764 55555456799999999999887542 34556654 56799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~a 163 (531)
|||+|||+|+.++||+|.+.+.+++|+........+++|.++++. +.++++|+|.|. ++|++++++|++++|.++|
T Consensus 77 GIClG~Qlla~~~Gg~V~~~~~~~~g~~~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a 154 (190)
T CHL00101 77 GVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDDLFQGLPNP--FTATRYHSLIIDPLNLPSPLEITAWTEDGLIMA 154 (190)
T ss_pred EEchhHHHHHHHhCCEEEECCCcccCceeeEeeCCcHhhccCCCc--eEEEcchhheeecccCCCceEEEEEcCCCcEEE
Confidence 999999999999999999998878887765555666899999888 999999999994 6999999999999999999
Q ss_pred EEECCCc-EEEEecCCCCCCCcccchhhhhhe
Q 039743 164 VENREKR-LFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~-i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++.+++ +||+|||||+.+++.|.+||+||+
T Consensus 155 ~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~ 186 (190)
T CHL00101 155 CRHKKYKMLRGIQFHPESLLTTHGQQILRNFL 186 (190)
T ss_pred EEeCCCCCEEEEEeCCccCCChhHHHHHHHHH
Confidence 9998888 999999999998899999999997
No 13
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1e-37 Score=300.45 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=174.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh-hccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL-DDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
++|+|+|+++++++.+.++++++|+++++++++.+. ++.. ..++|||||+|||+++.+. .....+++.+.++++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~---~~~~~~i~~~~~~~~ 77 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA---GASIDMVRACAAAGT 77 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhc---chHHHHHHHHHhCCC
Confidence 369999999999999999999999999999987642 2221 3579999999999875432 334578888888899
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecCcccceeee-EEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCC
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQG 159 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~ 159 (531)
||||||+|||+|+.++||+|.+.+.++.|... +.+. .+.+|.++++. +.++++|+|.+. ++|++++++|++++|
T Consensus 78 PiLGIC~G~Qlla~a~GG~v~~~~~~~~g~~~~v~~~-~~~~~~~~~~~--~~v~~~H~~~v~~~~lp~~~~vla~s~~~ 154 (214)
T PRK07765 78 PLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHT-GVGVLAGLPDP--FTATRYHSLTILPETLPAELEVTARTDSG 154 (214)
T ss_pred CEEEEccCHHHHHHHhCCEEeeCCCCccCceeEEEEC-CCccccCCCCc--cEEEecchheEecccCCCceEEEEEcCCC
Confidence 99999999999999999999998877777744 4444 34588888877 999999999984 899999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhh
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVK 215 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~ 215 (531)
.++|+++.++++||+|||||..++..|.++++||+ .+|++.++|++..++++.+.
T Consensus 155 ~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~-~~~~~~~~~~~~~~~~~~~~ 209 (214)
T PRK07765 155 VIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWL-TVCGWAPDEALVRRLENEVA 209 (214)
T ss_pred cEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHH-HHhccccchhhcccccchhh
Confidence 99999998888999999999998899999999998 89999999999988766543
No 14
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=2.3e-37 Score=296.01 Aligned_cols=185 Identities=23% Similarity=0.399 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
|.+|++||++++|++++++.|+++|+++++++++.+.+++...++|||||||||+++++... ..++++.+. .++||
T Consensus 1 ~~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~~---~~~li~~~~-~~~Pi 76 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGN---MMALIDRTL-GQIPL 76 (208)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhhH---HHHHHHHHh-CCCCE
Confidence 46799999999999999999999999999999988777776678999999999999876532 245666544 47999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceee-eEEEec---CCccccCCCCC----------ceEEEEeeccCccccCCCCc
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVER---SSGIFGNKKVG----------HHQVVWMSHGDEAVVLPDGF 150 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~---~~~l~~~~~~~----------~~~~v~~~H~~~v~~lp~g~ 150 (531)
||||+|||+|+.++||+|.+.. +++|.. .+.++. ++++|.+++.. ..+.||++|+|.|..+|+++
T Consensus 77 LGIClG~Qlla~alGG~V~~~~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~ 155 (208)
T PRK05637 77 LGICLGFQALLEHHGGKVEPCG-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGM 155 (208)
T ss_pred EEEcHHHHHHHHHcCCeeccCC-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhcCCCCe
Confidence 9999999999999999999765 456654 355543 45788877510 12889999999999999999
Q ss_pred EEEEEeCC--C-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 151 EVVARSQQ--G-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 151 ~vla~s~~--~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++|++++ | .++++++.++++||+|||||+.+|+.|.+||+||+
T Consensus 156 ~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl 202 (208)
T PRK05637 156 ESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCV 202 (208)
T ss_pred EEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHH
Confidence 99999754 4 45777888899999999999999999999999998
No 15
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=2.4e-37 Score=293.58 Aligned_cols=182 Identities=21% Similarity=0.400 Sum_probs=158.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||.+++|++++++.|+++|..+.+++.+ .+.+++...++|||||||||+++++... ...+++. .+.++|+|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~---~~~~i~~-~~~~~PvL 76 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI---SMEVIRY-FAGKIPIF 76 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCC---chHHHHH-hcCCCCEE
Confidence 38999999999999999999999999999987 4555555568999999999999887542 3344543 34689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~~v~a 163 (531)
|||+|||+|+.++||+|.+.+..++|+.......++++|++++.. +.++++|++.+ ..+|++++++|++++|.++|
T Consensus 77 GIClG~Qlla~~lGg~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~--~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a 154 (195)
T PRK07649 77 GVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNP--FTATRYHSLIVKKETLPDCLEVTSWTEEGEIMA 154 (195)
T ss_pred EEcHHHHHHHHHcCCEEeeCCCcccCCeEEEEECCChhhcCCCCC--CEEEEechheEecccCCCCeEEEEEcCCCcEEE
Confidence 999999999999999999988888887653333556899999988 99999999998 37999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++.++++||+|||||+.+++.|.+||+||+
T Consensus 155 ~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl 185 (195)
T PRK07649 155 IRHKTLPIEGVQFHPESIMTSHGKELLQNFI 185 (195)
T ss_pred EEECCCCEEEEEECCCCCCCccHHHHHHHHH
Confidence 9998888999999999999999999999998
No 16
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=5.1e-37 Score=289.90 Aligned_cols=181 Identities=27% Similarity=0.397 Sum_probs=158.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
||++||..++|++++++.|+++|+++.+++.+. +.+++...++|||||||||+++.+.. ....+++. .++++|+|
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~---~~~~~~~~-~~~~~PiL 76 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAG---ISLDVIRH-YAGRLPIL 76 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCC---ccHHHHHH-hcCCCCEE
Confidence 389999999999999999999999999999874 66666556899999999999987653 34566665 45689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~ 162 (531)
|||+|||+|+.++||+|.+...+++|.. .+.. ..+.+|++++.. +.++++|++.|. ++|++++++|.+++|.++
T Consensus 77 GIClG~Q~la~a~Gg~v~~~~~~~~g~~~~v~~-~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~ 153 (187)
T PRK08007 77 GVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITH-NGEGVFRGLANP--LTVTRYHSLVVEPDSLPACFEVTAWSETREIM 153 (187)
T ss_pred EECHHHHHHHHHcCCEEEeCCCcccCCceEEEE-CCCCcccCCCCC--cEEEEcchhEEccCCCCCCeEEEEEeCCCcEE
Confidence 9999999999999999999988888754 4543 345689999877 899999999984 799999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+++.+.++||+|||||+..+..|.+||+||+
T Consensus 154 a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl 185 (187)
T PRK08007 154 GIRHRQWDLEGVQFHPESILSEQGHQLLANFL 185 (187)
T ss_pred EEEeCCCCEEEEEeCCcccCCcchHHHHHHHh
Confidence 99999899999999999998999999999997
No 17
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=3.7e-37 Score=291.86 Aligned_cols=185 Identities=25% Similarity=0.421 Sum_probs=157.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||++++|++.++++|+++|++++++|++. +.+++...++|||||+|||+++++.. ....+++. .+.++|+|
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~---~~~~~l~~-~~~~~PvL 76 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAG---ISLELIRE-FAGKVPIL 76 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcc---hHHHHHHH-hcCCCCEE
Confidence 499999999999999999999999999999874 44444445699999999999886542 23456665 35689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~a 163 (531)
|||+|||+|+.++||+|.+.+..++|+........+++|++++.. +.++++|++.|. ++|++++++|.+++|.++|
T Consensus 77 GIClG~Qlla~alGg~v~~~~~~~~g~~~~v~~~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a 154 (189)
T PRK05670 77 GVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNP--FTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMG 154 (189)
T ss_pred EECHHHHHHHHHhCCEEEecCCcccCceeEEEeCCCchhccCCCC--cEEEcchhheeccccCCCceEEEEEeCCCcEEE
Confidence 999999999999999999987777776543335567899999887 899999999995 5999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++.++++||+|||||+..++.|.+||+||+ +.|
T Consensus 155 ~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~-~~~ 188 (189)
T PRK05670 155 VRHKELPIYGVQFHPESILTEHGHKLLENFL-ELA 188 (189)
T ss_pred EEECCCCEEEEeeCCCcCCCcchHHHHHHHH-Hhh
Confidence 9998889999999999998889999999997 544
No 18
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.3e-36 Score=288.71 Aligned_cols=182 Identities=23% Similarity=0.371 Sum_probs=159.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|++||+.++|++++++.|+++|..+.+++.+ .+.+++...++|||||+|||+++++... ...+++. .++++|||
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~---~~~~i~~-~~~~~PiL 76 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI---SLAVIRH-FADKLPIL 76 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCC---chHHHHH-hcCCCCEE
Confidence 38999999999999999999999999999986 4667776668999999999999977643 3455654 35699999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCC----
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQG---- 159 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~---- 159 (531)
|||+|||+|+.++||+|.+.+..++|+..+.....+++|++++.. +.++++|++.+ .++|++++++|+++++
T Consensus 77 GIC~G~Qlla~~~GG~v~~~~~~~~G~~~~~~~~~~~lf~~l~~~--~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~ 154 (191)
T PRK06774 77 GVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQP--LTVTRYHSLVIAADSLPGCFELTAWSERGGEMD 154 (191)
T ss_pred EECHHHHHHHHHhCCEEEeCCcceecceEEEEecCchhhcCCCCC--cEEEEeCcceeeccCCCCCeEEEEEeCCCCCcc
Confidence 999999999999999999988788999988777777899999877 89999999998 5789999999998753
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
.++++++++.++||+|||||+.+++.|.+||+||+
T Consensus 155 ~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~ 189 (191)
T PRK06774 155 EIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFL 189 (191)
T ss_pred eEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHh
Confidence 46778888789999999999988899999999997
No 19
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=3e-36 Score=284.98 Aligned_cols=181 Identities=25% Similarity=0.357 Sum_probs=157.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||++++|++++++.++++|..+.++|.+. +.+++...++|||||||||+++.+.. ...++++.+ ++++|||
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~---~~~~~i~~~-~~~~PvL 76 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAG---ISLEAIRHF-AGKLPIL 76 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcc---hhHHHHHHh-ccCCCEE
Confidence 389999999999999999999999999999764 56666556799999999999886532 246777776 6799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCC-cE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQG-AV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~-~v 161 (531)
|||+|||+|+.++||+|.+.+..++| +..++.+. +.++.++++. +.++++|++.| ..+|++++++|.++++ .+
T Consensus 77 GIC~G~Qll~~~~GG~v~~~~~~~~g~~~~v~~~~-~~~~~~l~~~--~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v 153 (188)
T TIGR00566 77 GVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNG-AGIFRGLFNP--LTATRYHSLVVEPETLPTCFPVTAWEEENIEI 153 (188)
T ss_pred EECHHHHHHHHHcCCEEeeCCCccccceEEEEECC-CccccCCCCC--cEEEEcccceEecccCCCceEEEEEcCCCCEE
Confidence 99999999999999999998777677 66666543 4578888776 89999999998 5899999999999875 99
Q ss_pred EEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+++.+.++||+|||||+.+++.|.+||+||+
T Consensus 154 ~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl 186 (188)
T TIGR00566 154 MAIRHRDLPLEGVQFHPESILSEQGHQLLANFL 186 (188)
T ss_pred EEEEeCCCCEEEEEeCCCccCCcccHHHHHHHH
Confidence 999999889999999999999999999999997
No 20
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=3e-36 Score=284.56 Aligned_cols=181 Identities=38% Similarity=0.659 Sum_probs=157.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCC-CEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNP-RVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~-dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|+|+|++|++++.++++++|..+.+++++.+.+++ .++ |||||||||. . + +.. .+.+...+.++|||
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l--~~~~dgivi~Gg~~-~-~----~~~-~~~~~l~~~~~Pil 71 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEI--KAFEDGLILSGGPD-I-E----RAG-NCPEYLKELDVPIL 71 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHH--hhcCCEEEECCCCC-h-h----hcc-ccHHHHHhCCCCEE
Confidence 38999999999999999999999999999987766655 445 9999999993 1 1 111 12223335689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|+.++||+|.+.+.+++|+..+.+++++++|.++++. +.++++|+|.+.++|++++++|.+++|.++|++
T Consensus 72 GIC~G~Q~L~~a~Gg~v~~~~~~~~g~~~i~~~~~~~l~~~~~~~--~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~ 149 (184)
T PRK00758 72 GICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGLPPE--IRVWASHADEVKELPDGFEILARSDICEVEAMK 149 (184)
T ss_pred EEeHHHHHHHHhcCcEEecCCCceeeeEEEEEcCCChhhhCCCCC--cEEEeehhhhhhhCCCCCEEEEECCCCCEEEEE
Confidence 999999999999999999998889999999988888899999888 999999999999999999999999999999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
+.++++||+|||||+++++.|.+||+||+ ++|+
T Consensus 150 ~~~~~~~g~QfHPE~~~~~~g~~l~~~f~-~~~~ 182 (184)
T PRK00758 150 HKEKPIYGVQFHPEVAHTEYGEEIFKNFL-EICG 182 (184)
T ss_pred ECCCCEEEEEcCCccCCCchHHHHHHHHH-HHHc
Confidence 88788999999999999889999999998 6553
No 21
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.4e-35 Score=281.88 Aligned_cols=181 Identities=22% Similarity=0.355 Sum_probs=155.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|++||.+++|++++++.++++|+++++++++ .+.+++...++|++|++|||+++++... ...+++. .++++|+|
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~---~~~~i~~-~~~~~PiL 76 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGI---SLQAIEH-FAGKLPIL 76 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcc---hHHHHHH-hcCCCCEE
Confidence 39999999999999999999999999999987 3555444567999999999999876532 3456665 46799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeee-EEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeC--C--
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQ--Q-- 158 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~--~-- 158 (531)
|||+|||+|+.++||+|.+.+.+++|+.. ++. .++++|.+++.. +.++++|++.|. ++|++++++|+++ +
T Consensus 77 GIClG~Qlia~a~Gg~v~~~~~~~~G~~~~~~~-~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~ 153 (193)
T PRK08857 77 GVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRH-TGRSVFKGLNNP--LTVTRYHSLVVKNDTLPECFELTAWTELEDGS 153 (193)
T ss_pred EEcHHHHHHHHHhCCEEEeCCCceeCceEEEEE-CCCcccccCCCc--cEEEEccEEEEEcCCCCCCeEEEEEecCcCCC
Confidence 99999999999999999999888888843 333 456789998887 999999999985 8999999999886 3
Q ss_pred -CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 159 -GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 159 -~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.++++++++.++||+|||||+.+++.|.+||+||+
T Consensus 154 ~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl 190 (193)
T PRK08857 154 MDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFL 190 (193)
T ss_pred cceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHH
Confidence 368999999999999999999999999999999997
No 22
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=1.8e-35 Score=279.26 Aligned_cols=180 Identities=24% Similarity=0.375 Sum_probs=154.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc-ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI-TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~-~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
|+|+|+|++|++.+++.++++|+++++++++...+.+ ...++||||++|||+++++.. ....+.+. .++++|+||
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~---~~~~i~~~-~~~~~PvlG 76 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAG---ISLEIIRA-LAGKVPILG 76 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccch---hHHHHHHH-HhcCCCEEE
Confidence 6899999999999999999999999999998765432 246799999999999876553 23344444 456899999
Q ss_pred eeHHHHHHHHHcCCEEeecCccccee-eeEEEecCCccccCCCCCceEEEEeeccCccccCCCC--cEEEEEeCCCcEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGR-MEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDG--FEVVARSQQGAVAA 163 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g--~~vla~s~~~~v~a 163 (531)
||+|||+|+.++||+|.+.+..+.|. +.++.. .+++|+++++. +.++++|+|.|..+|.+ ++++|.+++|.++|
T Consensus 77 IC~G~Qlla~~~Gg~v~~~~~~~~g~~~~v~~~-~~~~~~~~~~~--~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a 153 (184)
T cd01743 77 VCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHD-GSGLFKGLPQP--FTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMA 153 (184)
T ss_pred ECHhHHHHHHHhCCEEEeCCCCCcCceeEEEEC-CCccccCCCCC--cEEEeCcEEEEecCCCCceEEEEEeCCCCeEEE
Confidence 99999999999999999987766664 455543 56788999888 89999999999888887 99999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++.++++||+|||||+.+++.|.+||+||+
T Consensus 154 ~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 154 LRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 9998888999999999998899999999995
No 23
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.7e-36 Score=320.23 Aligned_cols=231 Identities=19% Similarity=0.283 Sum_probs=184.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC----hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS----LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~----~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|.+|+|||+++||++++++.|+++|..+.+++.+.+ .+++...++|+|||||||+++++.. ....++++. ..
T Consensus 1 ~~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~---~~~~i~~~~-~~ 76 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAG---CMPELLTRL-RG 76 (531)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCC---CCHHHHHHH-hc
Confidence 357999999999999999999999999988876543 3444345789999999999987653 345666653 45
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCc
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGA 160 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~ 160 (531)
++||||||+|||+|+.++||+|.+....++|+.........++|.+++.. +.++++|++.+..+|++++++|.+ ++.
T Consensus 77 ~iPILGIClG~QlLa~a~GG~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~--~~v~~~Hs~~v~~lP~~l~vlA~s-d~~ 153 (531)
T PRK09522 77 KLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNP--LPVARYHSLVGSNIPAGLTINAHF-NGM 153 (531)
T ss_pred CCCEEEEcHHHHHHHHhcCCEEEeCCceeeeeEEEEeecCCccccCCCCC--cEEEEehheecccCCCCcEEEEec-CCC
Confidence 89999999999999999999999987777887654333455789999888 999999999999999999999974 677
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc--cccccccccchhhhhhhhhhccccCc---cceeeccCCCC
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC--GVNAGWKLENVLDEEVKCIKDTVGLE---DHVICALSGGV 235 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~--~~~~~w~~~~~~~~~~~~i~~~v~~~---~kvvvalSGGv 235 (531)
++|+++.+.++||+|||||+.+|+.|.+||+||+ +.| +++++|+|.++++++.+. + .+... .-+-.-++|-+
T Consensus 154 v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl-~~~~~~~~~~~~~~~~l~~~~~~-~-~Lt~eea~~~~~~il~g~~ 230 (531)
T PRK09522 154 VMAVRHDADRVCGFQFHPESILTTQGARLLEQTL-AWAQQKLEPTNTLQPILEKLYQA-Q-TLSQQESHQLFSAVVRGEL 230 (531)
T ss_pred EEEEEECCCCEEEEEecCccccCcchHHHHHHHH-HHHhhcCCCCCCHHHHHHHhhcC-C-CCCHHHHHHHHHHHHcCCC
Confidence 9999998899999999999999999999999998 554 779999998877665432 1 12111 12334567877
Q ss_pred CHHHHHHHHH
Q 039743 236 DSTVAATLVH 245 (531)
Q Consensus 236 DS~v~a~l~~ 245 (531)
+..-.++++.
T Consensus 231 ~~~qi~AfL~ 240 (531)
T PRK09522 231 KPEQLAAALV 240 (531)
T ss_pred CHHHHHHHHH
Confidence 7766666664
No 24
>PLN02335 anthranilate synthase
Probab=100.00 E-value=1.2e-35 Score=287.47 Aligned_cols=187 Identities=20% Similarity=0.324 Sum_probs=156.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
++|+|||++++|+++++++|+++|+++++++++. +.+++...++|||||+|||+++++.+.. ...++. ...++|+
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~---~~~~~~-~~~~~Pi 94 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGIS---LQTVLE-LGPLVPL 94 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccch---HHHHHH-hCCCCCE
Confidence 5799999999999999999999999999999863 5555545679999999999999876421 233332 3457999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcc-cc-eeeeEEEec--CCccccCCCCCceEEEEeeccCccc--cCCCC-cEEEEEeC
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQ-EY-GRMEILVER--SSGIFGNKKVGHHQVVWMSHGDEAV--VLPDG-FEVVARSQ 157 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~-e~-G~~~v~~~~--~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g-~~vla~s~ 157 (531)
||||+|||+|+.++||+|.+.+.. ++ ++..++.+. .+++|++++.. +.++++|++.|. ++|++ ++++|+++
T Consensus 95 LGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~--~~v~~~H~~~v~~~~lp~~~~~v~a~~~ 172 (222)
T PLN02335 95 FGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNP--FTAGRYHSLVIEKDTFPSDELEVTAWTE 172 (222)
T ss_pred EEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCC--CEEEechhheEecccCCCCceEEEEEcC
Confidence 999999999999999999987643 44 455566553 35799999987 899999999984 67887 99999999
Q ss_pred CCcEEEEEECCCc-EEEEecCCCCCCCcccchhhhhheecccc
Q 039743 158 QGAVAAVENREKR-LFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 158 ~~~v~ai~~~~~~-i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
++.++++++.+.+ +||+|||||+..++.|..||+||+ +.|.
T Consensus 173 ~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~-~~~~ 214 (222)
T PLN02335 173 DGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI-KIIE 214 (222)
T ss_pred CCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHH-HHHH
Confidence 9999999998777 999999999999999999999998 5553
No 25
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.1e-35 Score=269.11 Aligned_cols=184 Identities=24% Similarity=0.419 Sum_probs=162.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
|.+||+||.-++|+.++++.++++|.++.++..+ .+.+.+...++|+||||.||+++.+. ....++++.+ ..++|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~---G~~~~~i~~~-~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDA---GISLELIRRF-AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHc---chHHHHHHHh-cCCCC
Confidence 4579999999999999999999999999998876 34444556789999999999987643 3356777776 66799
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc--CCCCcEEEEEeCC-Cc
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV--LPDGFEVVARSQQ-GA 160 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~--lp~g~~vla~s~~-~~ 160 (531)
+||||+|||.|+++|||+|.+.+.+-+|........++.+|+++++. +.+..+|+-.+.. +|+.++++|++++ +.
T Consensus 77 iLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h~g~~iF~glp~~--f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~ 154 (191)
T COG0512 77 ILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSGLFAGLPNP--FTVTRYHSLVVDPETLPEELEVTAESEDGGV 154 (191)
T ss_pred EEEECccHHHHHHHhCCEEEecCCCcCCeeeeeecCCcccccCCCCC--CEEEeeEEEEecCCCCCCceEEEEEeCCCCE
Confidence 99999999999999999999999889999884334457899999999 9999999988876 9999999999966 49
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|++|++.++||+|||||.-.|+.|.+|++||+
T Consensus 155 IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl 188 (191)
T COG0512 155 IMAVRHKKLPIYGVQFHPESILTEYGHRILENFL 188 (191)
T ss_pred EEEEeeCCCCEEEEecCCccccccchHHHHHHHH
Confidence 9999999999999999999999999999999998
No 26
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=4.2e-34 Score=271.12 Aligned_cols=181 Identities=23% Similarity=0.346 Sum_probs=152.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
++|+|||++++|++.++++|+++|.++.+++.+. +.++ ...+||||++|||+++. ..++ ..++++. .+.++|+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~--l~~~d~iIi~gGp~~~~--~~~~-~~~~i~~-~~~~~Pi 75 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDE--VENFSHILISPGPDVPR--AYPQ-LFAMLER-YHQHKSI 75 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhH--hccCCEEEECCCCCChH--HhhH-HHHHHHH-hcCCCCE
Confidence 4799999999999999999999999999988653 3333 35789999999998642 1222 2345554 4669999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAV 161 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v 161 (531)
||||+|||+|+.++||+|.+.+..+.| +..+....++++|+++++. +.++++|++.+. ++|+++.++|.++++.+
T Consensus 76 LGIClG~Qlla~~~Gg~V~~~~~~~~g~~~~v~~~~~~~l~~~~~~~--~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i 153 (190)
T PRK06895 76 LGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPEE--FNIGLYHSWAVSEENFPTPLEITAVCDENVV 153 (190)
T ss_pred EEEcHHHHHHHHHhCCeEeecCCCccCceEEEEECCCChhhhcCCCc--eEEEcchhheecccccCCCeEEEEECCCCcE
Confidence 999999999999999999887555454 5667766778999999988 999999999985 68999999999999999
Q ss_pred EEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+++.++++||+|||||+..++.|.+|++||+
T Consensus 154 ~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~ 186 (190)
T PRK06895 154 MAMQHKTLPIYGVQFHPESYISEFGEQILRNWL 186 (190)
T ss_pred EEEEECCCCEEEEEeCCCcCCCcchHHHHHHHH
Confidence 999998888999999999988999999999997
No 27
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=100.00 E-value=8.1e-35 Score=276.70 Aligned_cols=182 Identities=27% Similarity=0.466 Sum_probs=157.3
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc--ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 9 LILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI--TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 9 ~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
||+|+|++|++++.++++++|+++++++++.+.+.. ...++|||||+|||+++++ ......+++.+.++++|+||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~PilG 77 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD---IEGLIELIREARERKIPILG 77 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTSEEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc---ccccccccccccccceEEEE
Confidence 689999999999999999999999999988755443 2678999999999999887 12234678888889999999
Q ss_pred eeHHHHHHHHHcCCEEeecC-cccceeeeEEEe-cCCccccCCCCCceEEEEeeccCcccc---CCCCcEEEEEeCC-Cc
Q 039743 87 ICYGLQLMVQKLDGVVKVGE-KQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHGDEAVV---LPDGFEVVARSQQ-GA 160 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~-~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v~~---lp~g~~vla~s~~-~~ 160 (531)
||+|||+|+.++||+|.+.+ .++.|+...... ..++++.+.++. +.++++|+|.|.. +|++++++|++++ |.
T Consensus 78 IC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~ 155 (192)
T PF00117_consen 78 ICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPEDPLFYGLPES--FKAYQYHSDAVNPDDLLPEGFEVLASSSDGCP 155 (192)
T ss_dssp ETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEEHGGGTTSTSE--EEEEEEECEEEEEGHHHHTTEEEEEEETTTTE
T ss_pred EeehhhhhHHhcCCcccccccccccccccccccccccccccccccc--cccccccceeeecccccccccccccccccccc
Confidence 99999999999999999876 566666554333 335899999888 9999999999998 9999999999966 48
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhhee
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLF 195 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~ 195 (531)
++++.+.++++||+|||||++++..|..+++||+.
T Consensus 156 ~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~ 190 (192)
T PF00117_consen 156 IQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFL 190 (192)
T ss_dssp EEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHH
T ss_pred cccccccccEEEEEecCCcCCCCCCcchhhhheeE
Confidence 99999988889999999999999999999999984
No 28
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=100.00 E-value=1.8e-32 Score=302.70 Aligned_cols=190 Identities=26% Similarity=0.371 Sum_probs=163.7
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
..++|+|||+|++|.++++++|+++|+++.+++++...+.+...++|||||+|||+++++.. ...+++.+.+.++|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d~~----~~~~I~~~~~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFD----VAGTIDAALARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchhcc----cHHHHHHHHHCCCC
Confidence 34689999999999999999999999999999876543333346799999999999887542 24567777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCCc
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQGA 160 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~~ 160 (531)
+||||+|||+|+.++||+|.+.+.+++| +..+.+..++++|.+++.. +.++++|++.+ ..+|++++++|.++++.
T Consensus 591 vLGICLG~QlLa~a~GG~V~~~~~p~~G~~~~V~~~~~~~Lf~~lp~~--~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~ 668 (717)
T TIGR01815 591 VFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGLPER--LTVGRYHSLFARRDRLPAELTVTAESADGL 668 (717)
T ss_pred EEEECHHHHHHhhhhCCEEEECCCCeeCcceEEEECCCChhhhcCCCC--CEEEEECCCCcccccCCCCeEEEEEeCCCc
Confidence 9999999999999999999999888899 5668777777899999988 99999999876 67999999999999999
Q ss_pred EEEEEECCCcEEEEecCCCCCCCc---ccchhhhhheecccc
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSP---EGMETLRYFLFDVCG 199 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~---~g~~i~~~F~~~~~~ 199 (531)
++||++.+.++||+|||||+.+|. .|.+||+||+..+|+
T Consensus 669 v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 669 IMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAA 710 (717)
T ss_pred EEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhh
Confidence 999999888999999999997664 479999999855553
No 29
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=259.87 Aligned_cols=247 Identities=22% Similarity=0.342 Sum_probs=197.3
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
..+++.++++++..++++||||||+|||++|+++.+++|+++.|+|+|++.++..+.+.+.. +|+++||+|+++++...
T Consensus 4 ~~Kl~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~-~A~~iGi~H~~i~~~~~ 82 (269)
T COG1606 4 LSKLERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKN-IAKEIGIRHEFIKMNRM 82 (269)
T ss_pred HHHHHHHHHHHhhcCeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHH-HHHHhCCcceeeehhhc
Confidence 45567777777766799999999999999999999999999999999999999999999987 89999999999999753
Q ss_pred HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCC
Q 039743 291 FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLP 370 (531)
Q Consensus 291 f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~ 370 (531)
- . .-..||+++|+.|.+.++..+.+.|.+.| ++.++.|||++|+.+ ++| |+.
T Consensus 83 ~-~--~~~~n~~~rCY~CK~~v~~~l~~~a~~~G------yd~V~dGtNasDl~~----~RP---------------G~r 134 (269)
T COG1606 83 D-P--EFKENPENRCYLCKRAVYSTLVEEAEKRG------YDVVADGTNASDLFD----YRP---------------GLR 134 (269)
T ss_pred c-h--hhccCCCCcchHHHHHHHHHHHHHHHHcC------CCEEEeCCcHHHhcC----CCc---------------chh
Confidence 2 1 12247888888887778899999999888 899999999999977 677 566
Q ss_pred cccccceeccccc--CCHHHHHHHHHHcCCCccccccCCCCCCCcccccc-C-CCCcchHHHHHhhhhHHHHHHHHHcCc
Q 039743 371 KDMKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL-G-DVTEGNSLDILRQVDEIFIQSIKEAGL 446 (531)
Q Consensus 371 ~~~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~-g-~vt~~~l~~~~~~~d~~~~~~l~~~~~ 446 (531)
+..+..+-+||.+ ++|.|||++|+++|+|. |.+| +.+||++|++ | ++|.|++ ..+.+|+.+ +++.+
T Consensus 135 A~kE~gi~sPl~e~gitk~eIre~a~~lgl~~---~~kp-~~aCl~sr~p~g~ei~~e~l-~kv~~ae~~----l~~l~- 204 (269)
T COG1606 135 ALKELGIRSPLAEFGITKKEIREIAKSLGLPT---WDKP-SMACLASRIPYGEEITVEDL-KKVEEAEEF----LRELG- 204 (269)
T ss_pred hHHhcCCCChHHHhCCcHHHHHHHHHHcCCCc---ccCc-cccccccccCCCccccHHHH-HHHHHHHHH----HHHhh-
Confidence 6677789999999 89999999999999995 8889 9999999998 5 4799999 999999998 55554
Q ss_pred ccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCccccccccc-HHHHHHHHHHHHcCCC--CcccEEEecCCC
Q 039743 447 YDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFE-HKFLDDVARKICNTVR--GVNRVVQDITSK 523 (531)
Q Consensus 447 ~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~-~~~l~~~~~~i~~~~~--~v~rv~~d~~~k 523 (531)
+. ... | |.|++++++.. .+-+ .+++++ ..+|...+. |...|+.|++..
T Consensus 205 ~~----~ir---------v----r~~~~~A~iEv-----------~~ee~~k~~~~-~~~i~~~lk~~Gf~~VtldLegY 255 (269)
T COG1606 205 VR----QIR---------V----RSEDNLAVIEV-----------GPEEPEKLLNE-VEEIDDKLKKVGFRKVTLDLEGY 255 (269)
T ss_pred hc----eee---------e----eecCceeEEec-----------CccCHHHHhhh-HHHHHHHHHHhccceEEechhhh
Confidence 22 222 2 88888888754 1112 233332 222333333 899999998765
Q ss_pred CC
Q 039743 524 PP 525 (531)
Q Consensus 524 ~p 525 (531)
.-
T Consensus 256 rs 257 (269)
T COG1606 256 RS 257 (269)
T ss_pred hc
Confidence 43
No 30
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.4e-32 Score=294.93 Aligned_cols=227 Identities=22% Similarity=0.368 Sum_probs=176.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCE-EEEE-eCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSIL-SLCL-SGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~-~~v~-~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
+|+|||.+++|++++++.|+++|.. +.++ |++.+.+++...++|||||+|||+++++... ..++++. .+.++||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~---~~~li~~-~~~~~Pv 76 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGI---SVEVIRH-FSGKVPI 76 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCc---cHHHHHH-hhcCCCE
Confidence 4899999999999999999999986 5555 5566677765567999999999999876542 3456665 3568999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~ 162 (531)
||||+|||+|+.++||+|.+....++|+........+++|++++.. +.++++|++.|. .+|++++++|++++|.++
T Consensus 77 LGIClG~QlLa~a~Gg~V~~~~~~~~G~~~~v~~~~~~lf~~~~~~--~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~ 154 (534)
T PRK14607 77 LGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNP--TVATRYHSLVVEEASLPECLEVTAKSDDGEIM 154 (534)
T ss_pred EEEcHHHHHHHHHcCCeEecCCccccCCceeEEECCCcchhcCCCC--cEEeeccchheecccCCCCeEEEEEcCCCCEE
Confidence 9999999999999999999998888887654444566789999887 899999999984 699999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCc--c-ceeeccCCCCCHHH
Q 039743 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLE--D-HVICALSGGVDSTV 239 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~--~-kvvvalSGGvDS~v 239 (531)
|++++++++||+|||||+.+++.|.+||+||+ +.|. ..+++..+++++.+- + .+..+ . =+---++|-++-.-
T Consensus 155 a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl-~~~~--~~~~~~~~i~~l~~g-~-~Lt~~ea~~~~~~il~g~~~~~q 229 (534)
T PRK14607 155 GIRHKEHPIFGVQFHPESILTEEGKRILKNFL-NYQR--EEIDIKSYLKKLVEG-E-DLSFEEAEDVMEDITDGNATDAQ 229 (534)
T ss_pred EEEECCCCEEEEEeCCCCCCChhHHHHHHHHH-HHhh--ccCCHHHHHHHhccC-C-CCCHHHHHHHHHHHHcCCCCHHH
Confidence 99998889999999999999999999999998 6664 344555555443321 0 11101 1 12224567776655
Q ss_pred HHHHH
Q 039743 240 AATLV 244 (531)
Q Consensus 240 ~a~l~ 244 (531)
+++++
T Consensus 230 ~~AfL 234 (534)
T PRK14607 230 IAGFL 234 (534)
T ss_pred HHHHH
Confidence 55555
No 31
>PRK13566 anthranilate synthase; Provisional
Probab=99.98 E-value=9.2e-32 Score=297.61 Aligned_cols=186 Identities=23% Similarity=0.330 Sum_probs=164.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||+|+++.+++++++++.|+++++++++.+.+.+...++|||||+|||+++.+.. ...+++.+.++++|||
T Consensus 527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~~----~~~lI~~a~~~~iPIL 602 (720)
T PRK13566 527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFD----CKATIDAALARNLPIF 602 (720)
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhCC----cHHHHHHHHHCCCcEE
Confidence 589999999999999999999999999999988765555456899999999999875432 4578888888899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~ 162 (531)
|||+|||+|+.++||+|.+.+.++.| +..+++..++++|+++++. +.++++|++.+. .+|++++++|.+++|.|+
T Consensus 603 GIClG~QlLa~alGG~V~~~~~~~~G~~~~V~v~~~~~Lf~~lp~~--~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ 680 (720)
T PRK13566 603 GVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGRLFSGLPEE--FTVGRYHSLFADPETLPDELLVTAETEDGVIM 680 (720)
T ss_pred EEehhHHHHHHHcCCEEEECCCCccCCceEEEECCCCchhhcCCCC--CEEEEecceeEeeccCCCceEEEEEeCCCcEE
Confidence 99999999999999999998777776 4668888778999999988 999999998774 599999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCC---cccchhhhhheeccc
Q 039743 163 AVENREKRLFGLQYHPEVTHS---PEGMETLRYFLFDVC 198 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~---~~g~~i~~~F~~~~~ 198 (531)
|+++.+.++||+|||||+..| ..|.+||+||+ +.|
T Consensus 681 ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl-~~~ 718 (720)
T PRK13566 681 AIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVV-RLL 718 (720)
T ss_pred EEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHH-HHh
Confidence 999988899999999999776 46999999998 555
No 32
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.98 E-value=1.5e-31 Score=251.05 Aligned_cols=173 Identities=21% Similarity=0.321 Sum_probs=139.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
|+|+|||+|| +++++++++|++++++|++.+.+++...++|||||+|||+++.+. ....++++.+.++++|+|||
T Consensus 1 i~i~d~g~~~--~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~---~~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 1 VVVIDFGVKH--NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALL---DEAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CEEEecCcHH--HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHh---HHHHHHHHHHHhCCCCEEEE
Confidence 6899999998 489999999999999999877665545679999999999865432 23456788888889999999
Q ss_pred eHHHHHHHHHcCCEEeecCccccee-eeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcEEE
Q 039743 88 CYGLQLMVQKLDGVVKVGEKQEYGR-MEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAVAA 163 (531)
Q Consensus 88 C~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v~a 163 (531)
|+|||+|+.++||+|.+.+.++.|. +++..... ... +.+.++|++.+. .+|++++++|++ +++.++|
T Consensus 76 C~G~Q~l~~~~Gg~v~~~~~~~~g~~~~v~~~~~-------~~~--~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a 146 (178)
T cd01744 76 CLGHQLLALALGAKTYKMKFGHRGSNHPVKDLIT-------GRV--YITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEG 146 (178)
T ss_pred CHHHHHHHHHcCCceecCCCCCCCCceeeEEcCC-------CCc--EEEEcCceEEEcccccCCceEEEEEECCCCcEEE
Confidence 9999999999999999865444443 22322111 122 678889999985 799999999997 5789999
Q ss_pred EEECCCcEEEEecCCCCCCCc-ccchhhhhhe
Q 039743 164 VENREKRLFGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
+++++.++||+|||||+.+++ ....+|++|+
T Consensus 147 ~~~~~~~i~GvQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 147 IRHKDLPVFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred EEECCCCeEEEeeCCCCCCCCCCchHhHhhhC
Confidence 999889999999999998765 5678999985
No 33
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=7.7e-31 Score=250.56 Aligned_cols=176 Identities=24% Similarity=0.355 Sum_probs=141.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCC---CCCCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHS---PDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~---~~~~~~~~~l~~~~~~~~iPv 84 (531)
|+|||||++|.++++++|+++|+++++++... ++ .++|+|||+||...... ..... ..+.++.+.++++||
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~---~l--~~~d~iiipG~~~~~~~~~~~~~~~-~~~~i~~~~~~~~pi 74 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE---EI--LSADKLILPGVGAFGDAMANLRERG-LIEALKEAIASGKPF 74 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH---Hh--ccCCEEEECCCCcHHHHHHHHHHcC-hHHHHHHHHHCCCcE
Confidence 68999999999999999999999999987432 22 46899999876432110 00011 245667777789999
Q ss_pred EEeeHHHHHHHHH------------cCCEEeecCc------ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccC
Q 039743 85 LGICYGLQLMVQK------------LDGVVKVGEK------QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 85 LGIC~G~Qlla~~------------~GG~v~~~~~------~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
||||+|||+|+++ ++|+|.+.+. +++|++.+....++++|+++++. +.++++|++.+..
T Consensus 75 lGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~--~~v~~~Hs~~v~~- 151 (198)
T cd01748 75 LGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIPDG--SYFYFVHSYYAPP- 151 (198)
T ss_pred EEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhhhCCCCC--CeEEEEeEEEEec-
Confidence 9999999999998 8899998654 48999999988888999999988 8999999999864
Q ss_pred CCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 147 PDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 147 p~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+.+.++|.++++ .++++. .++++||+|||||++. +.|.++++||+
T Consensus 152 ~~~~~~la~s~~~~~~~~~~-~~~~i~GvQFHPE~~~-~~g~~~~~nf~ 198 (198)
T cd01748 152 DDPDYILATTDYGGKFPAAV-EKDNIFGTQFHPEKSG-KAGLKLLKNFL 198 (198)
T ss_pred CCcceEEEEecCCCeEEEEE-EcCCEEEEECCCcccc-HhHHHHHHhhC
Confidence 5567889988765 455654 5678999999999995 69999999995
No 34
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=7.7e-31 Score=252.00 Aligned_cols=182 Identities=24% Similarity=0.325 Sum_probs=145.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC-CCC--CChHHHHHHHHhCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP-DAP--AFPAGFLEWALSNG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~-~~~--~~~~~l~~~~~~~~ 81 (531)
|+||+|||||+++.++++++|+++|.++++... .+.+++ .++|||||||+..+..+. ... .+...+++.+.+.+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~-~~~~~l--~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVT-ADPDAV--AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAG 77 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEE-CCHHHh--cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCC
Confidence 357999999999999999999999994433222 233444 678999999986542211 011 23446677766789
Q ss_pred CcEEEeeHHHHHHHHH------------cCCEEeec-------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCc
Q 039743 82 VYVLGICYGLQLMVQK------------LDGVVKVG-------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDE 142 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~------------~GG~v~~~-------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~ 142 (531)
+|+||||+|||+|+.+ ++|+|.+. ..+++||+.+++.+++++|+++++. +.++++|+|.
T Consensus 78 ~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~~~~lf~~~~~~--~~v~~~Hs~~ 155 (209)
T PRK13146 78 RPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTRDHPLFAGIPDG--ARFYFVHSYY 155 (209)
T ss_pred CcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCCCChhccCCCCC--CEEEEEeEEE
Confidence 9999999999999999 89999886 3468999999998888999999988 8999999999
Q ss_pred cccCCCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 143 AVVLPDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 143 v~~lp~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+..+| +..++|+++.+ .++++.. ++++||+|||||++ +..|.++++||+
T Consensus 156 v~~~~-~~~~la~s~~~~~~~a~~~-~~~i~GvQFHPE~s-~~~G~~ll~nfl 205 (209)
T PRK13146 156 AQPAN-PADVVAWTDYGGPFTAAVA-RDNLFATQFHPEKS-QDAGLALLRNFL 205 (209)
T ss_pred EEcCC-CCcEEEEEcCCCEEEEEEe-cCCEEEEEcCCccc-HHHHHHHHHHHH
Confidence 87555 67899988775 5777764 58899999999998 479999999997
No 35
>PRK05665 amidotransferase; Provisional
Probab=99.97 E-value=9.7e-30 Score=248.51 Aligned_cols=173 Identities=20% Similarity=0.284 Sum_probs=140.4
Q ss_pred EEEEEeCCC----------CcHHHHHHHHHHCCCEEEEEeCCCChhcc--ccCCCCEEEEcCCCCCCCCCCCCCCh--HH
Q 039743 7 LVLILDYGS----------QYTHLITRRIRSLSILSLCLSGTCSLDDI--TAKNPRVVILSGGPHSVHSPDAPAFP--AG 72 (531)
Q Consensus 7 ~I~IlD~G~----------~~~~~i~r~l~~~G~~~~v~~~~~~~~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~--~~ 72 (531)
||+||..|. +|...+.+.+.+.+...++..++....++ ...++||+|++|||.+++++ .||+. .+
T Consensus 4 ki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~-~pwi~~l~~ 82 (240)
T PRK05665 4 RICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGT-DPWIQTLKT 82 (240)
T ss_pred EEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCcccc-chHHHHHHH
Confidence 599996664 34555777777777543332222211111 14679999999999999875 57765 36
Q ss_pred HHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCc-ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcE
Q 039743 73 FLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEK-QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
+++.+.++++|+||||+|||+|++++||+|.+++. .+.|...++++...+++..+++. +.++++|+|.|..||+|++
T Consensus 83 ~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~~~~~~~~~~~~~~~~--~~~~~~H~D~V~~LP~ga~ 160 (240)
T PRK05665 83 YLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAAHAPWMSPAVTE--LTLLISHQDQVTALPEGAT 160 (240)
T ss_pred HHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEEEecCCCccccCCCCc--eEEEEEcCCeeeeCCCCcE
Confidence 77888888999999999999999999999999764 47899999888878899988888 9999999999999999999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
++|+|+.|++++++. ++++||+|||||+++.
T Consensus 161 ~La~s~~~~~q~~~~-~~~~~g~QfHPE~~~~ 191 (240)
T PRK05665 161 VIASSDFCPFAAYHI-GDQVLCFQGHPEFVHD 191 (240)
T ss_pred EEEeCCCCcEEEEEe-CCCEEEEecCCcCcHH
Confidence 999999999999985 5789999999999974
No 36
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.97 E-value=1.4e-29 Score=250.36 Aligned_cols=242 Identities=19% Similarity=0.318 Sum_probs=184.6
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
+.+++.+.+.++++||||||+||+++++++++. |.+++++|++++..+..|.+.+.+ +|+.+|+++++++.++.. ..
T Consensus 3 ~~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~-g~~v~av~~~~~~~~~~e~~~a~~-~a~~lgi~~~ii~~~~~~-~~ 79 (252)
T TIGR00268 3 ENLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDA-GTEVLAITVVSPSISPRELEDAII-IAKEIGVNHEFVKIDKMI-NP 79 (252)
T ss_pred HHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHh-CCCEEEEEecCCCCCHHHHHHHHH-HHHHcCCCEEEEEcHHHH-HH
Confidence 455666666789999999999999999999998 999999999999888778888776 899999999999997532 22
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+. .+++++|++|.+.+++.+.+.|++.| +++|++||+.+|+.+. +|| +....+
T Consensus 80 ~~--~n~~~~c~~ck~~~~~~l~~~A~~~g------~~~I~~G~n~dD~~~~----rpg---------------~~a~~~ 132 (252)
T TIGR00268 80 FR--ANVEERCYFCKKMVLSILVKEAEKRG------YDVVVDGTNADDLFDH----RPG---------------YRAVKE 132 (252)
T ss_pred HH--hCCCcccchhhHHHHHHHHHHHHHcC------CCEEEECCCCcccccc----cHH---------------HHHHHH
Confidence 22 25666676777778888888999888 8999999999999773 342 111123
Q ss_pred cceeccccc--CCHHHHHHHHHHcCCCccccccCCCCCCCcccccc-C-CCCcchHHHHHhhhhHHHHHHHHHcCccccc
Q 039743 375 LKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL-G-DVTEGNSLDILRQVDEIFIQSIKEAGLYDLI 450 (531)
Q Consensus 375 ~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~-g-~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~ 450 (531)
..+++||.+ ++|+|||++|+++|+|. |..| +.+||++|++ | ++|+++| ..++++|++ |+..|+.+
T Consensus 133 ~~~~~PL~~~~l~K~eIr~la~~~gl~~---~~~p-s~~Cl~sr~~~g~~it~~~l-~~v~~~E~~----l~~~g~~~-- 201 (252)
T TIGR00268 133 FNGVSPWAEFGITKKEIREIAKSLGISF---PDKP-SEACLASRFPFGREIDEEKL-KMVDEAEEV----LRNAGVGQ-- 201 (252)
T ss_pred cCCCCcchhcCCCHHHHHHHHHHcCCCc---cCCC-CCCceEeecCCCCcCCHHHH-HHHHHHHHH----HHHcCCCe--
Confidence 346699987 79999999999999994 8888 7899999998 5 7999999 999999999 66677532
Q ss_pred ccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCC--CcccEEEecCCCC
Q 039743 451 WQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVR--GVNRVVQDITSKP 524 (531)
Q Consensus 451 ~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~--~v~rv~~d~~~k~ 524 (531)
+.| |.++.++.|..- . .++. .++.. ...|.+.++ |...|..|++...
T Consensus 202 ---~rv-------------r~~~~~a~ie~~-~-----~~~~----~~~~~-~~~i~~~~~~~gf~~v~ldl~g~~ 250 (252)
T TIGR00268 202 ---VRV-------------RNYDNLAVIEVP-E-----DELS----KLLNE-AEEVRDKFKDIGFRKVLIDLEGYR 250 (252)
T ss_pred ---EEE-------------EecCCeEEEEEC-H-----HHHH----HHHhh-HHHHHHHHHHcCCCeEEEccCCcc
Confidence 444 778888877641 1 1111 12222 234445555 9999999998764
No 37
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.97 E-value=5.1e-30 Score=250.87 Aligned_cols=181 Identities=25% Similarity=0.349 Sum_probs=146.9
Q ss_pred CCEEEEEeCC----------CCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh--HH
Q 039743 5 PELVLILDYG----------SQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP--AG 72 (531)
Q Consensus 5 ~~~I~IlD~G----------~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~ 72 (531)
|++|+||..+ +.|.+.+.+.++..|....++............++|||||+|||.+++++ .+|+. .+
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~-~~w~~~~~~ 79 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDR-LDWSERTAD 79 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCC-chhHHHHHH
Confidence 4568888443 34566677777778888887655432111124679999999999999875 57764 46
Q ss_pred HHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCc-ccceeeeEEEec---CCccccCCCCCceEEEEeeccCccccCCC
Q 039743 73 FLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEK-QEYGRMEILVER---SSGIFGNKKVGHHQVVWMSHGDEAVVLPD 148 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~---~~~l~~~~~~~~~~~v~~~H~~~v~~lp~ 148 (531)
+++.+.++++||||||+|||+|+.++||+|.+.+. .++|+..++++. .+++|+++++. +.++++|+|.|.++|+
T Consensus 80 ~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~--~~v~~~H~d~v~~lp~ 157 (237)
T PRK09065 80 WLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQ--FPAHLTHLQSVLRLPP 157 (237)
T ss_pred HHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccChhhhcCCcc--CcEeeehhhhhhhCCC
Confidence 78888888999999999999999999999998754 789999999875 34799999888 9999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 149 GFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 149 g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|++++|++++|.++|+++. +++||+|||||++. .++++|+
T Consensus 158 ~~~~la~s~~~~iqa~~~~-~~i~gvQfHPE~~~-----~~~~~~~ 197 (237)
T PRK09065 158 GAVVLARSAQDPHQAFRYG-PHAWGVQFHPEFTA-----HIMRAYL 197 (237)
T ss_pred CCEEEEcCCCCCeeEEEeC-CCEEEEEeCCcCCH-----HHHHHHH
Confidence 9999999999999999975 57999999999986 3666665
No 38
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=2.9e-30 Score=245.70 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=136.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh-HHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP-AGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~-~~l~~~~~~~~iPv 84 (531)
++|+|||||++|.++++++|+++|++++++... +++ .++|+|||||+..+..+-. .+. ..+++.+.+.++||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~---~~~--~~~d~iIlPG~G~~~~~~~--~l~~~~l~~~i~~~~~Pi 73 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDP---DVI--LAADKLFLPGVGTAQAAMD--QLRERELIDLIKACTQPV 73 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCH---HHh--CCCCEEEECCCCchHHHHH--HHHHcChHHHHHHcCCCE
Confidence 369999999999999999999999999988532 333 4679999988544321110 111 12445555568999
Q ss_pred EEeeHHHHHHHHHcC------------CEEeec-----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 85 LGICYGLQLMVQKLD------------GVVKVG-----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 85 LGIC~G~Qlla~~~G------------G~v~~~-----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
||||+|||+|+.+++ |+|.+. +.+++||+.+++.+++++++++++. +.+|++|++. +|
T Consensus 74 lGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~~~~l~~~l~~~--~~v~~~Hs~~---lp 148 (196)
T PRK13170 74 LGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQGIEDG--SYFYFVHSYA---MP 148 (196)
T ss_pred EEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCCCChhhhCCCcC--CEEEEECeee---cC
Confidence 999999999999972 466653 3568999999988888899999988 9999999986 47
Q ss_pred CCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 148 DGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 148 ~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++..++|+++.+ .++++. .++++||+|||||++. +.|.++|+||+
T Consensus 149 ~~~~~la~s~~~~~~~~~~-~~~~i~G~QFHPE~~~-~~G~~~l~nfl 194 (196)
T PRK13170 149 VNEYTIAQCNYGEPFSAAI-QKDNFFGVQFHPERSG-AAGAQLLKNFL 194 (196)
T ss_pred CCCcEEEEecCCCeEEEEE-EcCCEEEEECCCCCcc-cccHHHHHHHh
Confidence 778889988764 444443 4678999999999996 79999999997
No 39
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.97 E-value=1.8e-29 Score=246.93 Aligned_cols=178 Identities=21% Similarity=0.278 Sum_probs=146.5
Q ss_pred CCEEEEE-eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc-ccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhC
Q 039743 5 PELVLIL-DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI-TAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSN 80 (531)
Q Consensus 5 ~~~I~Il-D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~-~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~ 80 (531)
+++|+|| ++++++..++++.+++.|..+.++......... ...++||+||+|||.++++.. +|+. .++++.+.++
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~-~wi~~~~~~i~~~~~~ 85 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPD-DFIRREIDWISVPLKE 85 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCc-hHHHHHHHHHHHHHHC
Confidence 3567777 889999999999999999999987543211101 146799999999999998864 6655 3677777888
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCc--ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEK--QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQ 158 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~--~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~ 158 (531)
++|+||||+|||+|++++||+|.+++. .+.|+..++++..++++..++ ..++++|+|. ..||++++++|++++
T Consensus 86 ~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~~~~~~~~~~----~~~~~~H~d~-~~lP~~~~~LA~s~~ 160 (239)
T PRK06490 86 NKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTEAGRALMHWP----EMVYHWHREG-FDLPAGAELLATGDD 160 (239)
T ss_pred CCCEEEECHhHHHHHHHcCCEeecCCCCCCccceEEeEECCCcccccCCC----CEEEEECCcc-ccCCCCCEEEEeCCC
Confidence 999999999999999999999999764 489999999987776665553 4688999999 789999999999999
Q ss_pred CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 159 GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 159 ~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+++||+. ++++||+|||||++. +++++|+
T Consensus 161 ~~~qa~~~-~~~v~g~QfHPE~~~-----~~~~~~i 190 (239)
T PRK06490 161 FPNQAFRY-GDNAWGLQFHPEVTR-----AMMHRWV 190 (239)
T ss_pred CCeEEEEe-CCCEEEEeeCccCCH-----HHHHHHH
Confidence 99999997 458999999999985 4777775
No 40
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.97 E-value=9.8e-30 Score=251.12 Aligned_cols=198 Identities=24% Similarity=0.298 Sum_probs=145.5
Q ss_pred CCCCC--CEEEEEe-C----CC--C-cHHHHHHHHHHCCCEEEEEeCCCC-hhccc--cCCCCEEEEcCCCCCC----CC
Q 039743 1 MENKP--ELVLILD-Y----GS--Q-YTHLITRRIRSLSILSLCLSGTCS-LDDIT--AKNPRVVILSGGPHSV----HS 63 (531)
Q Consensus 1 ~~~~~--~~I~IlD-~----G~--~-~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~--~~~~dgiIlsGGp~s~----~~ 63 (531)
|+|.| +.|+|.- . +. + ..+.+.+++..+|..+.++|.... .+.+. ...+|||||+||+.++ |.
T Consensus 1 ~~~~m~~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg 80 (254)
T PRK11366 1 MENIMNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYG 80 (254)
T ss_pred CCCCCCCCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcC
Confidence 67755 5688862 1 10 1 124578899999999999986432 12221 4568999999998766 32
Q ss_pred C--CCCC-------ChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC----c----c---------cc-eeeeEE
Q 039743 64 P--DAPA-------FPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE----K----Q---------EY-GRMEIL 116 (531)
Q Consensus 64 ~--~~~~-------~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~----~----~---------e~-G~~~v~ 116 (531)
+ ..++ ++.++++.+.++++||||||+|||+|+.++||+|.+.. . . .+ +.+.++
T Consensus 81 ~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~ 160 (254)
T PRK11366 81 ENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQ 160 (254)
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEE
Confidence 2 1122 22478888889999999999999999999999999751 0 0 01 245677
Q ss_pred EecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEECCCc-EEEEecCCCCCCCccc--chhhhhh
Q 039743 117 VERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKR-LFGLQYHPEVTHSPEG--METLRYF 193 (531)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~-i~gvQFHPE~~~~~~g--~~i~~~F 193 (531)
+++++.+...++....+.|+.+|++.|..+|++++++|++++|.++||++.+++ ++|+|||||+..+..+ ..||++|
T Consensus 161 ~~~~s~l~~i~~~~~~~~Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~f 240 (254)
T PRK11366 161 VEEGGLLSALLPECSNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGF 240 (254)
T ss_pred ECCCCcHHHhcCCCceEEeehHHHHHHhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHH
Confidence 766654433332212278999999999999999999999999999999998777 5999999999987777 7899999
Q ss_pred eecccc
Q 039743 194 LFDVCG 199 (531)
Q Consensus 194 ~~~~~~ 199 (531)
+ +.|+
T Consensus 241 v-~~~~ 245 (254)
T PRK11366 241 I-TACQ 245 (254)
T ss_pred H-HHHH
Confidence 8 6664
No 41
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=4.8e-30 Score=245.15 Aligned_cols=176 Identities=22% Similarity=0.359 Sum_probs=138.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC---CCCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP---DAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~---~~~~~~~~l~~~~~~~~iPv 84 (531)
|+|||||++|.+++++++|.+|++++++. +.+++ .++|+||+|||+....+. ....+. +.++.+.+.++|+
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~---~~~~l--~~~d~lilpG~g~~~~~~~~l~~~~~~-~~i~~~~~~~~Pv 75 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSS---DPEEI--AGADKVILPGVGAFGQAMRSLRESGLD-EALKEHVEKKQPV 75 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEc---ChHHh--ccCCEEEECCCCCHHHHHHHHHHCChH-HHHHHHHHCCCCE
Confidence 99999999999999999999999998873 23333 568999998875421110 011222 3445556779999
Q ss_pred EEeeHHHHHHHHH-----------cCCEEeecCc-----ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCC
Q 039743 85 LGICYGLQLMVQK-----------LDGVVKVGEK-----QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD 148 (531)
Q Consensus 85 LGIC~G~Qlla~~-----------~GG~v~~~~~-----~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~ 148 (531)
||||+|||+|+.+ +|++|.+.+. +++||+.+++.+++++|+++++. +.++++|++.+...+
T Consensus 76 lGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~--~~~~~~Hs~~v~~~~- 152 (199)
T PRK13181 76 LGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESPLFKGIEEG--SYFYFVHSYYVPCED- 152 (199)
T ss_pred EEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCCCChhHcCCCCC--CEEEEeCeeEeccCC-
Confidence 9999999999999 7899988643 58999999888788999999988 899999999876555
Q ss_pred CcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 149 GFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 149 g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
.+.++|+++.+ .+++.. .++++||+|||||+++ +.|.++|+||+
T Consensus 153 ~~~~lA~s~~~~~~~~~~-~~~~i~GvQFHPE~~~-~~g~~ll~nfl 197 (199)
T PRK13181 153 PEDVLATTEYGVPFCSAV-AKDNIYAVQFHPEKSG-KAGLKLLKNFA 197 (199)
T ss_pred cccEEEEEcCCCEEEEEE-ECCCEEEEECCCccCC-HHHHHHHHHHH
Confidence 45689998764 343333 3578999999999984 79999999997
No 42
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=1.3e-29 Score=259.84 Aligned_cols=175 Identities=23% Similarity=0.349 Sum_probs=142.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|+|||.++ +++|+|+++|+++.++|++.+.+++...++|||||||||+++.+. ....++++.+.++++|+|
T Consensus 178 ~~I~viD~G~k~--nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~~---~~~~~~i~~~~~~~~Pil 252 (360)
T PRK12564 178 YKVVAIDFGVKR--NILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAAL---DYAIEMIRELLEKKIPIF 252 (360)
T ss_pred CEEEEEeCCcHH--HHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHHH---HHHHHHHHHHHHcCCeEE
Confidence 479999999765 699999999999999999987777655579999999999865321 223467788887899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v 161 (531)
|||+|||+|+.++||++.+.+..+.|.. ++.... -... +.++++|++.|. ++|++++++|.+ +++.+
T Consensus 253 GIClG~QlLa~a~Gg~v~kl~~gh~G~~~pv~~~~-------~~~~--~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~i 323 (360)
T PRK12564 253 GICLGHQLLALALGAKTYKMKFGHRGANHPVKDLE-------TGKV--EITSQNHGFAVDEDSLPANLEVTHVNLNDGTV 323 (360)
T ss_pred EECHHHHHHHHHhCCcEeccCCCccCCceeeEECC-------CCcE--EEEecCcccEEcccccCCceEEEEEeCCCCcE
Confidence 9999999999999999998764444432 222211 0122 667889999995 899999999998 68999
Q ss_pred EEEEECCCcEEEEecCCCCCCCc-ccchhhhhhe
Q 039743 162 AAVENREKRLFGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
+|+++++.++||+|||||..+++ ++..+|++|+
T Consensus 324 egi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~ 357 (360)
T PRK12564 324 EGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFV 357 (360)
T ss_pred EEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHH
Confidence 99999999999999999998766 4788999997
No 43
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.96 E-value=5.5e-29 Score=242.66 Aligned_cols=180 Identities=22% Similarity=0.348 Sum_probs=146.6
Q ss_pred CCEEEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCC-CCCChH--HHHHHHHh
Q 039743 5 PELVLILDYG-SQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPD-APAFPA--GFLEWALS 79 (531)
Q Consensus 5 ~~~I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~-~~~~~~--~l~~~~~~ 79 (531)
|++|+||-.- .....++.++|++.|..+.+++.... .......++||||++|||.+++++. .||+.. ++++.+.+
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~ 81 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLA 81 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHH
Confidence 5679999432 23356799999999999988876432 1111246799999999999999875 477653 67777788
Q ss_pred CCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEEEe
Q 039743 80 NGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARS 156 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s 156 (531)
.++|+||||+|||+|+.++||+|.+.+.+|+|+.++++++. +++ .+++.. +.++++|+|.+ .+|+|++++|+|
T Consensus 82 ~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~i~~t~~g~~~pl-~~~~~~--~~~~~~H~d~~-~lP~ga~~La~s 157 (234)
T PRK07053 82 AGLPTLGICLGAQLIARALGARVYPGGQKEIGWAPLTLTDAGRASPL-RHLGAG--TPVLHWHGDTF-DLPEGATLLAST 157 (234)
T ss_pred CCCCEEEECccHHHHHHHcCCcEecCCCCeEeEEEEEEeccccCChh-hcCCCc--ceEEEEeCCEE-ecCCCCEEEEcC
Confidence 89999999999999999999999998888999999998754 344 456666 89999999996 799999999999
Q ss_pred CCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 157 QQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 157 ~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.|++++|+. ++++||+|||||++.. +++.|+
T Consensus 158 ~~~~~qaf~~-g~~~~g~QfHpE~~~~-----~~~~w~ 189 (234)
T PRK07053 158 PACRHQAFAW-GNHVLALQFHPEARED-----RFEAWL 189 (234)
T ss_pred CCCCeeEEEe-CCCEEEEeeCccCCHH-----HHHHHH
Confidence 9999999996 6789999999999974 666665
No 44
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=5.4e-30 Score=246.02 Aligned_cols=180 Identities=24% Similarity=0.377 Sum_probs=146.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC---CCCCChHHHHHHHHhCCCc
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP---DAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~---~~~~~~~~l~~~~~~~~iP 83 (531)
+|+|||||++|...++++|+++|+++.++..+ +++ .++||||||||.....+. ..+.. .+.++.+.++++|
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~---~~l--~~~d~iiipG~~~~~~~~~~~~~~~~-~~~i~~~~~~~~p 74 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDP---EEI--LAADGVILPGVGAFPDAMANLRERGL-DEVIKEAVASGKP 74 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCH---HHh--ccCCEEEECCCCchHHHHHHHHHcCh-HHHHHHHHHCCCc
Confidence 48999999999999999999999999997532 333 578999999874421110 00112 3455666778999
Q ss_pred EEEeeHHHHHHHHH------------cCCEEeecC------cccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 84 VLGICYGLQLMVQK------------LDGVVKVGE------KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 84 vLGIC~G~Qlla~~------------~GG~v~~~~------~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
+||||+|+|+|+++ +||+|.+.+ .+++|++.++++.+++++++++.. +.++++|++.+ .
T Consensus 75 vlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~--~~v~~~Hs~~v-~ 151 (205)
T PRK13141 75 LLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLLKGIPDG--AYVYFVHSYYA-D 151 (205)
T ss_pred EEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhhhCCCCC--CEEEEECeeEe-c
Confidence 99999999999997 679998864 458899999988888999999888 89999999987 5
Q ss_pred CCCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 146 LPDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 146 lp~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+|+++.++|+++++ .++++.. ++++||+|||||++. +.|.++|+||+ +.|
T Consensus 152 ~~~~~~v~a~~~~~~~~~a~~~-~~~i~GvQfHPE~~~-~~g~~l~~~fl-~~~ 202 (205)
T PRK13141 152 PCDEEYVAATTDYGVEFPAAVG-KDNVFGAQFHPEKSG-DVGLKILKNFV-EMV 202 (205)
T ss_pred cCCcCeEEEEEeCCcEEEEEEe-cCCEEEEeCCCccch-HHHHHHHHHHH-HHh
Confidence 78889999988766 7888875 678999999999986 68999999998 666
No 45
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.96 E-value=2e-29 Score=231.98 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCC--CCCC-CCCCChHHHHHHHHhCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS--VHSP-DAPAFPAGFLEWALSNG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s--~~~~-~~~~~~~~l~~~~~~~~ 81 (531)
|++|+|||||+++.+++.++++++|+++++.. +.+++ ...|+|||||-..- +.+. ....+ .+.++...+.+
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~---d~~~i--~~AD~liLPGVGaf~~am~~L~~~gl-~~~i~~~~~~~ 74 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSR---DPEEI--LKADKLILPGVGAFGAAMANLRERGL-IEAIKEAVESG 74 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEec---CHHHH--hhCCEEEecCCCCHHHHHHHHHhcch-HHHHHHHHhcC
Confidence 46799999999999999999999999888753 44444 56799999995441 1000 01122 23444445568
Q ss_pred CcEEEeeHHHHHHHHH------------cCCEEeec-----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc
Q 039743 82 VYVLGICYGLQLMVQK------------LDGVVKVG-----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV 144 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~------------~GG~v~~~-----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~ 144 (531)
+|+||||+|||+|... +.|+|.+. +.|++||+.+++.++++||+++++. ..+|+.|+|.+.
T Consensus 75 kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~--~~~YFVHSY~~~ 152 (204)
T COG0118 75 KPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDG--AYFYFVHSYYVP 152 (204)
T ss_pred CCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCCC--CEEEEEEEEeec
Confidence 9999999999999883 34778775 4579999999998778999999987 799999999976
Q ss_pred cCCCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 145 VLPDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 145 ~lp~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
. .+.-.+++.++.+ .+.|+.. +++++|+|||||+++ ..|.++++||+
T Consensus 153 ~-~~~~~v~~~~~YG~~f~AaV~-k~N~~g~QFHPEKSg-~~Gl~lL~NFl 200 (204)
T COG0118 153 P-GNPETVVATTDYGEPFPAAVA-KDNVFGTQFHPEKSG-KAGLKLLKNFL 200 (204)
T ss_pred C-CCCceEEEeccCCCeeEEEEE-eCCEEEEecCcccch-HHHHHHHHHHH
Confidence 4 3445667767655 4444432 468999999999998 78999999998
No 46
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.96 E-value=1.5e-29 Score=242.37 Aligned_cols=175 Identities=21% Similarity=0.315 Sum_probs=136.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-----CCCChHHHHHHHHh
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-----APAFPAGFLEWALS 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-----~~~~~~~l~~~~~~ 79 (531)
|++|+|||||.++..+++++++.+|+++.+++.+ +++ .++|+||+||+.+ + +.. ...+...+ +.+.+
T Consensus 1 ~~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~---~~l--~~~d~iIlPG~g~-~-~~~~~~l~~~gl~~~i-~~~~~ 72 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE---SEL--AQVHALVLPGVGS-F-DLAMKKLEKKGLITPI-KKWIA 72 (210)
T ss_pred CcEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH---HHh--hhCCEEEECCCCc-h-HHHHHHHHHCCHHHHH-HHHHH
Confidence 4579999999999999999999999999988643 233 4579999877543 2 111 01222333 34456
Q ss_pred CCCcEEEeeHHHHHHHHH-----------cCCEEeec------CcccceeeeEEEecC------CccccCCCCCceEEEE
Q 039743 80 NGVYVLGICYGLQLMVQK-----------LDGVVKVG------EKQEYGRMEILVERS------SGIFGNKKVGHHQVVW 136 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~-----------~GG~v~~~------~~~e~G~~~v~~~~~------~~l~~~~~~~~~~~v~ 136 (531)
+++|+||||+|||+|++. ++|+|.+. +.+++||.+++++.+ +++|+++++. +.+|
T Consensus 73 ~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~--~~v~ 150 (210)
T CHL00188 73 EGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN--PWAY 150 (210)
T ss_pred cCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCC--CEEE
Confidence 799999999999999986 56788776 457899999998755 5699999988 9999
Q ss_pred eeccCccccCCCCcEEEEEeC----CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 137 MSHGDEAVVLPDGFEVVARSQ----QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 137 ~~H~~~v~~lp~g~~vla~s~----~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|++.+. |++...++.+. ++.++|++. +++||+|||||++ ++.|.+|++||+
T Consensus 151 ~~HS~~v~--p~~~~~l~~t~~~~~~~~v~a~~~--~~i~GvQFHPE~s-~~~G~~il~nfl 207 (210)
T CHL00188 151 FVHSYGVM--PKSQACATTTTFYGKQQMVAAIEY--DNIFAMQFHPEKS-GEFGLWLLREFM 207 (210)
T ss_pred EeCccEec--CCCCceEEEEEecCCcceEEEEec--CCEEEEecCCccc-cHhHHHHHHHHH
Confidence 99999874 55566666653 445999985 5899999999999 799999999998
No 47
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.96 E-value=6.8e-29 Score=243.38 Aligned_cols=175 Identities=19% Similarity=0.306 Sum_probs=140.4
Q ss_pred CEEEEEeCCCCcH---HHHHHHHHHCCCE---EEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCC---CCCChH----
Q 039743 6 ELVLILDYGSQYT---HLITRRIRSLSIL---SLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPD---APAFPA---- 71 (531)
Q Consensus 6 ~~I~IlD~G~~~~---~~i~r~l~~~G~~---~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~---- 71 (531)
+.|+|+-.+..-. ..+++.++..|.. +.++..... .......++|||||+|||.++++.. .||+..
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~ 81 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE 81 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence 3489997776543 6788999988864 444333222 1111246789999999999999862 566532
Q ss_pred --HHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEec---CCccccCCCCCceEEEEeeccCccccC
Q 039743 72 --GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVER---SSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 72 --~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~---~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
.+++.+.++++||||||+|||+|+.++||+|.+...+++|+..++++. .+++|.+++.. +.++++|+|.|..+
T Consensus 82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~~~v~l~~~g~~~~l~~~~~~~--~~~~~~H~d~V~~l 159 (242)
T PRK07567 82 LSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGAVTVSLTDAGRADPLLAGLPDT--FTAFVGHKEAVSAL 159 (242)
T ss_pred HHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCccEEEEECCccCCChhhcCCCCc--eEEEeehhhhhhhC
Confidence 345556688999999999999999999999998656799999999875 35789988888 99999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 147 PDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 147 p~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
|++++++|++++|+++|+++ ++++||+|||||++..
T Consensus 160 p~~~~vlA~s~~~~vqa~~~-~~~~~gvQfHPE~~~~ 195 (242)
T PRK07567 160 PPGAVLLATSPTCPVQMFRV-GENVYATQFHPELDAD 195 (242)
T ss_pred CCCCEEEEeCCCCCEEEEEe-CCCEEEEEeCCcCCHH
Confidence 99999999999999999997 4679999999999874
No 48
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.96 E-value=1.1e-28 Score=233.87 Aligned_cols=178 Identities=30% Similarity=0.391 Sum_probs=146.2
Q ss_pred EEEEEeCCCCc-HHHHHHHHHHCC---CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhC
Q 039743 7 LVLILDYGSQY-THLITRRIRSLS---ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSN 80 (531)
Q Consensus 7 ~I~IlD~G~~~-~~~i~r~l~~~G---~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~ 80 (531)
+|+|+...... ...+.++++++| .++++++...........++|||||+||+.++.....+|.. .++++.+.++
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA 80 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence 47888665443 567899999999 68888776554321225789999999999987222334433 3677888888
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcc-cceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEEEe
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQ-EYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARS 156 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~-e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s 156 (531)
++|+||||+|||+|+.++||+|.+.+.. +.|++++.++.. .++++++++. +.++++|++.|..+|++++++|++
T Consensus 81 ~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~lp~~~~~la~~ 158 (188)
T cd01741 81 GKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDE--FPVFHWHGDTVVELPPGAVLLASS 158 (188)
T ss_pred CCCEEEECccHHHHHHHhCCEEecCCCcceeEEEEEEeccccccCchhhcCCCc--ceEEEEeccChhhCCCCCEEeecC
Confidence 9999999999999999999999998766 899999998754 4678888877 999999999999999999999999
Q ss_pred CCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 157 QQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 157 ~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|.+++++.. .++||+||||| .++++||+
T Consensus 159 ~~~~v~~~~~~-~~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 159 EACPNQAFRYG-DRALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred CCCCcceEEec-CCEEEEccCch-------HHHHhhhC
Confidence 99999999975 78999999999 67899884
No 49
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.96 E-value=6.6e-29 Score=254.29 Aligned_cols=177 Identities=22% Similarity=0.351 Sum_probs=139.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|+|||.+| +++++|+++|++++++|++.+.+++....+|||||||||+++.+. ....++++.+.+ ++|+|
T Consensus 174 ~~i~viD~G~k~--ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~~~---~~~i~~i~~~~~-~~PIL 247 (358)
T TIGR01368 174 KRVVVIDFGVKQ--NILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPAAV---EPAIETIRKLLE-KIPIF 247 (358)
T ss_pred cEEEEEeCCcHH--HHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHHHH---HHHHHHHHHHHc-CCCEE
Confidence 479999999875 599999999999999999887776655578999999999865321 123356677776 99999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCccc--cCC-CCcEEEEEe-CCCc
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLP-DGFEVVARS-QQGA 160 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp-~g~~vla~s-~~~~ 160 (531)
|||+|||+|+.++||++.+.+..+.|.. ++.. +.....+.+.++|++.|. .+| ++++++|.+ +|+.
T Consensus 248 GIClG~QlLa~a~Gg~v~kl~~gh~G~nhpV~~---------~~~~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~ 318 (358)
T TIGR01368 248 GICLGHQLLALAFGAKTYKMKFGHRGGNHPVKD---------LITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGT 318 (358)
T ss_pred EECHHHHHHHHHhCCceeccCcCcCCCceeeEE---------CCCCcEEEeecCCCcEEcccccCCCceEEEEEECCCCc
Confidence 9999999999999999998765555532 2221 111212556678999985 466 789999998 6899
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcc-cchhhhhheeccc
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPE-GMETLRYFLFDVC 198 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~-g~~i~~~F~~~~~ 198 (531)
|+|+++++.++||+|||||..+.+. ...||++|+ +.+
T Consensus 319 Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~-~~~ 356 (358)
T TIGR01368 319 VEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFI-DLI 356 (358)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHH-HHh
Confidence 9999999999999999999987764 567999997 544
No 50
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=1.1e-28 Score=236.03 Aligned_cols=175 Identities=21% Similarity=0.347 Sum_probs=136.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~iPv 84 (531)
|+|+|||.+|.+++.+.++.+|+++.++... +++ .++|+|||||+.+...+.. ...+...+.+.+.++++|+
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~---~~l--~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pv 76 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKNP---KDL--QKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPI 76 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECCH---HHH--cCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcE
Confidence 8999999999999999999999988876543 233 4689999988765211100 1123456667667889999
Q ss_pred EEeeHHHHHHHHH------------cCCEEeecC------cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccC
Q 039743 85 LGICYGLQLMVQK------------LDGVVKVGE------KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 85 LGIC~G~Qlla~~------------~GG~v~~~~------~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
||||+|||+|+.+ ++|+|.+.. .++.||+.+++.+++++|+++++. +.++++|++.+..+
T Consensus 77 lGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~~~--~~~~~vHS~~v~~~ 154 (201)
T PRK13152 77 LGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLYQGIPEK--SDFYFVHSFYVKCK 154 (201)
T ss_pred EEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECCCChhhhCCCCC--CeEEEEcccEeecC
Confidence 9999999999997 237787643 357899999998888999999887 89999999998655
Q ss_pred CCCcEEEEEeCCC--cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 147 PDGFEVVARSQQG--AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 147 p~g~~vla~s~~~--~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+ ..+.|.++++ .+++++ ++++||+|||||+++ +.|.++|+||+
T Consensus 155 ~--~~v~a~~~~g~~~~~a~~--~~~i~GvQFHPE~~~-~~g~~ll~~Fl 199 (201)
T PRK13152 155 D--EFVSAKAQYGHKFVASLQ--KDNIFATQFHPEKSQ-NLGLKLLENFA 199 (201)
T ss_pred C--CcEEEEECCCCEEEEEEe--cCCEEEEeCCCeecC-hhhHHHHHHHH
Confidence 4 4567776655 455665 478999999999985 68999999997
No 51
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.96 E-value=2.4e-28 Score=272.52 Aligned_cols=191 Identities=18% Similarity=0.273 Sum_probs=154.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHC-CCEEEEEeCCC-Chhccc-----cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 6 ELVLILDYGSQYTHLITRRIRSL-SILSLCLSGTC-SLDDIT-----AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~-G~~~~v~~~~~-~~~~~~-----~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
++||+||..++|++++++.|+++ |..+.++..+. +.+++. ...+|||||||||+++..........+++..+
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~- 160 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC- 160 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence 47999999999999999999998 99988888764 555542 25799999999999654322111122333321
Q ss_pred hCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCC--ceEEEEeeccCcc--ccCCCCcEEEE
Q 039743 79 SNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVG--HHQVVWMSHGDEA--VVLPDGFEVVA 154 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~--~~~~v~~~H~~~v--~~lp~g~~vla 154 (531)
.++||||||+|||+|+.++||+|.+.+.+++|....-......+|.+++.. ..+.|..+|+..| ..+|++++++|
T Consensus 161 -~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG~~s~I~h~~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~A 239 (918)
T PLN02889 161 -RDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIA 239 (918)
T ss_pred -CCCcEEEEcHHHHHHHHhcCceEEeCCCceeeeeeeEeecCchhhcCCCcCCCCCceEEeCCCcccccCCCCCceEEEE
Confidence 479999999999999999999999999999998663223455799999861 1289999999888 46999999999
Q ss_pred EeCC-----------------------------------------------------CcEEEEEECCCcEEEEecCCCCC
Q 039743 155 RSQQ-----------------------------------------------------GAVAAVENREKRLFGLQYHPEVT 181 (531)
Q Consensus 155 ~s~~-----------------------------------------------------~~v~ai~~~~~~i~gvQFHPE~~ 181 (531)
++++ +.++|++|.+.|+||+|||||..
T Consensus 240 ~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi 319 (918)
T PLN02889 240 WTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESI 319 (918)
T ss_pred EECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCccc
Confidence 8854 57999999999999999999999
Q ss_pred CCcccchhhhhheecccc
Q 039743 182 HSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 182 ~~~~g~~i~~~F~~~~~~ 199 (531)
.++.|.+||+||+ ++|+
T Consensus 320 ~t~~G~~l~~nF~-~~~~ 336 (918)
T PLN02889 320 ATCYGRQIFKNFR-EITQ 336 (918)
T ss_pred cCchhHHHHHHHH-HHHH
Confidence 9999999999998 6664
No 52
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=1.8e-28 Score=234.30 Aligned_cols=179 Identities=22% Similarity=0.346 Sum_probs=141.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC--hHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF--PAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~--~~~l~~~~~~~~iP 83 (531)
+||+|||||++|...++++++++|+++++++. .+++ .++|||||+||.. +.+...+. ..+.++.+.++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~---~~~~--~~~d~iii~G~~~--~~~~~~~~~~~~~~i~~~~~~~~P 73 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD---PEEI--LDADGIVLPGVGA--FGAAMENLSPLRDVILEAARSGKP 73 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC---HHHH--ccCCEEEECCCCC--HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 37999999999999999999999999998753 2233 5789999988532 22211222 23567777888999
Q ss_pred EEEeeHHHHHHHHH------------cCCEEeecCc----ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 84 VLGICYGLQLMVQK------------LDGVVKVGEK----QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 84 vLGIC~G~Qlla~~------------~GG~v~~~~~----~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
+||||+|+|+|+++ +||+|.+.+. +++|+..+++..+++++++++ . ..++++|++.+ .++
T Consensus 74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~-~--~~~~~~Hs~~~-~~~ 149 (200)
T PRK13143 74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVKDCPLFEGID-G--EYVYFVHSYYA-YPD 149 (200)
T ss_pred EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcCCChhhccCC-C--cEEEEEeeeee-CCC
Confidence 99999999999985 6899987543 577999999888888998884 4 46888999986 466
Q ss_pred CCcEEEEEeCC-CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 148 DGFEVVARSQQ-GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 148 ~g~~vla~s~~-~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++.++|++++ +.++++.. ++++||+|||||++. +.|.+||++|+ +.|
T Consensus 150 ~~~~~la~~~~~~~~~~~~~-~~~~~gvQfHPE~~~-~~g~~i~~~f~-~~~ 198 (200)
T PRK13143 150 DEDYVVATTDYGIEFPAAVC-NDNVFGTQFHPEKSG-ETGLKILENFV-ELI 198 (200)
T ss_pred CcceEEEEEcCCCEEEEEEE-cCCEEEEeCCCccch-HHHHHHHHHHH-HHH
Confidence 77899999986 45666654 569999999999985 68999999997 555
No 53
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.95 E-value=2.8e-28 Score=230.22 Aligned_cols=179 Identities=25% Similarity=0.337 Sum_probs=143.9
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCC----CCC-----------CCCCChHHHHHHHHhC
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSV----HSP-----------DAPAFPAGFLEWALSN 80 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~----~~~-----------~~~~~~~~l~~~~~~~ 80 (531)
.+.+.+++..+|.-+.++|...+.+.+. ....|||||||| +++ |.+ ....++..+++.|+++
T Consensus 28 ~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~ 106 (243)
T COG2071 28 PYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALER 106 (243)
T ss_pred HHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHc
Confidence 4568888888999999999554444332 567899999999 432 322 1223455899999999
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeec-------------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVG-------------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~-------------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
++||||||+|+|+|+.+|||++.+. ....+..+.|++.+++.|.+-++... +.|++.|++.+.+|.
T Consensus 107 ~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~~-~~VNS~HhQaIk~La 185 (243)
T COG2071 107 GIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESE-FMVNSFHHQAIKKLA 185 (243)
T ss_pred CCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcCccc-eeecchHHHHHHHhC
Confidence 9999999999999999999999873 12245678888888888888777443 899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEECC-CcEEEEecCCCCCCCc--ccchhhhhheecccc
Q 039743 148 DGFEVVARSQQGAVAAVENRE-KRLFGLQYHPEVTHSP--EGMETLRYFLFDVCG 199 (531)
Q Consensus 148 ~g~~vla~s~~~~v~ai~~~~-~~i~gvQFHPE~~~~~--~g~~i~~~F~~~~~~ 199 (531)
+++++.|.++|+.|+|+++++ ..++|||||||..... ..+++|+.|. ++|+
T Consensus 186 ~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~-~~~~ 239 (243)
T COG2071 186 PGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFV-NACK 239 (243)
T ss_pred CCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHH-HHHH
Confidence 999999999999999999985 5588999999987543 5679999998 7664
No 54
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.95 E-value=7.6e-28 Score=268.41 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=146.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHC-C--CEEEEEeCCCChhcc-c-cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSL-S--ILSLCLSGTCSLDDI-T-AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~-G--~~~~v~~~~~~~~~~-~-~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
.+||+||++++|++++++.|++. | +.+.+++++....++ . ..++|||||+|||+++.+.....+..++++...+.
T Consensus 6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~ 85 (742)
T TIGR01823 6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELANLD 85 (742)
T ss_pred ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhcccC
Confidence 57999999999999999999997 3 567888877543322 1 45799999999999886554333333444331123
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcccceeee-EEEecCCccccCCCCCceEEEEeeccCcccc-CCCC--cEEEEEe
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERSSGIFGNKKVGHHQVVWMSHGDEAVV-LPDG--FEVVARS 156 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~-lp~g--~~vla~s 156 (531)
++||||||+|||+|+.++||+|.+.+.+++|+.. +.. ....+|.+++ . +.++++|++.+.. .|+. +.+++.+
T Consensus 86 ~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG~~~~v~~-~~~~lf~gl~-~--~~v~~~Hs~~v~~~~~~~l~~~~~a~~ 161 (742)
T TIGR01823 86 EVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMHT-NDAAIFCGLF-S--VKSTRYHSLYANPEGIDTLLPLCLTED 161 (742)
T ss_pred CCcEEEEchhhHHHHhhcCCEEEECCCCCcCeEEEEEE-CCccccCCCC-C--CceeEEEEEEccCCCCCcceEEEEEEc
Confidence 5999999999999999999999999888888743 433 3456888887 3 7899999998854 4444 4566666
Q ss_pred CCC-cEEEEEECCCcEEEEecCCCCCCCccc-chhhhhheecccc
Q 039743 157 QQG-AVAAVENREKRLFGLQYHPEVTHSPEG-METLRYFLFDVCG 199 (531)
Q Consensus 157 ~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g-~~i~~~F~~~~~~ 199 (531)
+++ .++|+++.+.++||+|||||+.+++.| .+||+||+ ++|.
T Consensus 162 ~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl-~~~~ 205 (742)
T TIGR01823 162 EEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFL-KLAF 205 (742)
T ss_pred CCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHH-HHHH
Confidence 554 699999999999999999999888876 99999998 6653
No 55
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.95 E-value=2e-28 Score=233.16 Aligned_cols=175 Identities=24% Similarity=0.362 Sum_probs=137.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCC--CCCCCCCCC-hHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS--VHSPDAPAF-PAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s--~~~~~~~~~-~~~l~~~~~~~~iPv 84 (531)
|+|+|||++|..+++++++.+|+++++++.+. ++ .++|+||++|+.+. .++. ..+. ...+++.+.+.++||
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~---~l--~~~d~lii~G~~~~~~~~~~-l~~~~~~~l~~~~~~~~~pv 74 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSK---EA--ELADKLILPGVGAFGAAMAR-LRENGLDLFVELVVRLGKPV 74 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHH---Hh--ccCCEEEECCCCCHHHHHHH-HHHcCcHHHHHHHHhCCCCE
Confidence 68999999999999999999999999988542 22 46899999884331 1110 0111 234546667789999
Q ss_pred EEeeHHHHHHHHH------------cCCEEeecC---cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCC
Q 039743 85 LGICYGLQLMVQK------------LDGVVKVGE---KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDG 149 (531)
Q Consensus 85 LGIC~G~Qlla~~------------~GG~v~~~~---~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g 149 (531)
||||+|||+|+.+ +||+|.+.+ .++.|+..+....++++|+++++. +.++++|++.+...| +
T Consensus 75 lGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~--~~v~~~Hs~~v~~~~-~ 151 (196)
T TIGR01855 75 LGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEG--AYFYFVHSYYAVCEE-E 151 (196)
T ss_pred EEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHHhCCCCC--CEEEEECeeEecCCC-C
Confidence 9999999999998 789998874 558999998888888899999988 999999999986544 5
Q ss_pred cEEEEEeCC-CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 150 FEVVARSQQ-GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 150 ~~vla~s~~-~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
. ++|.+++ +.++++. .++++||+|||||+++ +.|.++++||+
T Consensus 152 ~-~~a~~~~g~~~~~~~-~~~~i~GvQFHPE~~~-~~g~~ll~~f~ 194 (196)
T TIGR01855 152 A-VLAYADYGEKFPAAV-QKGNIFGTQFHPEKSG-KTGLKLLENFL 194 (196)
T ss_pred c-EEEEEcCCcEEEEEE-ecCCEEEEECCCccCc-HhHHHHHHHHH
Confidence 4 5666655 5666654 5678999999999985 79999999997
No 56
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.95 E-value=7.5e-28 Score=227.66 Aligned_cols=176 Identities=19% Similarity=0.273 Sum_probs=133.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHhCCCc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALSNGVY 83 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~~~iP 83 (531)
|++|.|+++.++|... .++++.+|+.+..++.. ++ ..++|||||+||++++++...... ..++++.+.++++|
T Consensus 1 ~m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~~---~~--l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P 74 (189)
T PRK13525 1 MMKIGVLALQGAVREH-LAALEALGAEAVEVRRP---ED--LDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLP 74 (189)
T ss_pred CCEEEEEEcccCHHHH-HHHHHHCCCEEEEeCCh---hH--hccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCe
Confidence 3579999999998755 58899999999888642 22 356899999999987654311111 13567777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEe-----------cCCccccCCCCCceEEEEeeccCccccCCCCcEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVE-----------RSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEV 152 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~-----------~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~v 152 (531)
+||||+|+|+|+.++||. ...++|..++++. ..++++.++++. +.+|++|+|.|..+|+++++
T Consensus 75 ilGIC~G~QlL~~~~gg~----~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~~--~~~~~~H~d~v~~lp~~~~v 148 (189)
T PRK13525 75 VFGTCAGMILLAKEIEGY----EQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGEP--FPAVFIRAPYIEEVGPGVEV 148 (189)
T ss_pred EEEECHHHHHHHhhcccC----CCCceeeEEEEEEEccCCCceeeEEecccccCCCCC--eEEEEEeCceeeccCCCcEE
Confidence 999999999999999983 1122232222221 223567777767 99999999999999999999
Q ss_pred EEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 153 VARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 153 la~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
+|+++++. ++++. +++||+|||||++.+ .+||+||+ ++|+
T Consensus 149 lA~~~~~~-~~~~~--~~~~g~QfHPE~~~~---~~~~~~f~-~~~~ 188 (189)
T PRK13525 149 LATVGGRI-VAVRQ--GNILATSFHPELTDD---TRVHRYFL-EMVK 188 (189)
T ss_pred EEEcCCEE-EEEEe--CCEEEEEeCCccCCC---chHHHHHH-HHhh
Confidence 99997655 56764 589999999999874 79999997 7774
No 57
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.95 E-value=8.9e-28 Score=245.60 Aligned_cols=178 Identities=22% Similarity=0.322 Sum_probs=138.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+++||| +.++++++|+++|+.++++|++.+.+++...++|||||||||+++.+.. ....+++.+.++ +|+|
T Consensus 168 ~~V~viD~G--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~---~~~~~i~~~~~~-~Pvl 241 (354)
T PRK12838 168 KHVALIDFG--YKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ---PYLPEIKKLISS-YPIL 241 (354)
T ss_pred CEEEEECCC--HHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH---HHHHHHHHHhcC-CCEE
Confidence 579999998 6788999999999999999998877766556899999999999764321 123455555555 9999
Q ss_pred EeeHHHHHHHHHcCCEEeecCccccee-eeEEEecCCccccCCCCCceEEEEeeccCcccc--CCC-CcEEEEEe-CCCc
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGR-MEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV--LPD-GFEVVARS-QQGA 160 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~--lp~-g~~vla~s-~~~~ 160 (531)
|||+|||+|+.++||++.+.+..+.|. +++.....+ ..+.+.++|++.|.. +++ ++++.+.+ +|+.
T Consensus 242 GIClG~QlLa~a~Gg~v~kl~~gh~G~~hpV~~~~~~---------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~ 312 (354)
T PRK12838 242 GICLGHQLIALALGADTEKLPFGHRGANHPVIDLTTG---------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGS 312 (354)
T ss_pred EECHHHHHHHHHhCCEEecCCCCccCCceEEEECCCC---------eEEEeccchheEecccccCCCCcEEEEEECCCCe
Confidence 999999999999999999876554443 334332211 114566789999853 664 58999986 6889
Q ss_pred EEEEEECCCcEEEEecCCCCCCCc-ccchhhhhheecccc
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSP-EGMETLRYFLFDVCG 199 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~~~~~~ 199 (531)
++|+++++.++||+|||||....+ ++..||++|+ +.|+
T Consensus 313 Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~-~~~~ 351 (354)
T PRK12838 313 IEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFL-EMME 351 (354)
T ss_pred EEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHH-HHHH
Confidence 999999999999999999998765 5789999998 5553
No 58
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.95 E-value=2.6e-27 Score=231.40 Aligned_cols=178 Identities=20% Similarity=0.257 Sum_probs=143.6
Q ss_pred EEEEEe-CCCCcHHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCC--CCCCCCh----HHHHHHH
Q 039743 7 LVLILD-YGSQYTHLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHS--PDAPAFP----AGFLEWA 77 (531)
Q Consensus 7 ~I~IlD-~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~--~~~~~~~----~~l~~~~ 77 (531)
+|+|+- -...-...+..++++.|..+.+...... +.+. ..++||||++|||.++++ ...+|+. .++++.+
T Consensus 2 ~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~ 80 (235)
T PRK08250 2 RVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQA 80 (235)
T ss_pred eEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHH
Confidence 467762 2223355688899999998887654332 1222 357999999999998654 3456762 3677888
Q ss_pred HhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEE
Q 039743 78 LSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVA 154 (531)
Q Consensus 78 ~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla 154 (531)
.++++|+||||+|+|+|+.++||+|.+++.+|+|+.+++++.. +++|.++++. +.++++|+|. ..+|+|++++|
T Consensus 81 ~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~v~lt~~g~~d~l~~~~~~~--~~v~~~H~d~-~~lP~~a~~LA 157 (235)
T PRK08250 81 IKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYFPITLTEAGLKDPLLSHFGST--LTVGHWHNDM-PGLTDQAKVLA 157 (235)
T ss_pred HHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEEEEEEccccccCchhhcCCCC--cEEEEEecce-ecCCCCCEEEE
Confidence 8889999999999999999999999998888999999998854 4689999888 9999999997 57999999999
Q ss_pred EeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 155 RSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 155 ~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+.|+++|++. +.++||+|||||++.. +++.++
T Consensus 158 ~s~~~~~qa~~~-~~~~~g~QfHPE~~~~-----~~~~~~ 191 (235)
T PRK08250 158 TSEGCPRQIVQY-SNLVYGFQCHMEFTVE-----AVELLI 191 (235)
T ss_pred CCCCCCceEEEe-CCCEEEEeecCcCCHH-----HHHHHH
Confidence 999999999996 5679999999999874 666665
No 59
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.95 E-value=1.6e-27 Score=245.36 Aligned_cols=166 Identities=27% Similarity=0.386 Sum_probs=132.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+++|||. .++|+|+|+++|++++++|++.+.+++...++|||||||||+++.+ .++ ..+.++.+. .++|+|
T Consensus 241 ~~IvviD~G~--K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~~--~~~-~ie~ik~l~-~~iPIl 314 (415)
T PLN02771 241 YHVIAYDFGI--KHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPSA--VPY-AVETVKELL-GKVPVF 314 (415)
T ss_pred CEEEEECCCh--HHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChhH--hhH-HHHHHHHHH-hCCCEE
Confidence 4799999997 4679999999999999999998888776678999999999987632 222 223344433 489999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEe-CCCcE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARS-QQGAV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s-~~~~v 161 (531)
|||+|||+|+.++||++.+.+.++.|.. ++.. ........+.++|++.| .++|+++++++.+ +|+.+
T Consensus 315 GICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~---------~~~~~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtv 385 (415)
T PLN02771 315 GICMGHQLLGQALGGKTFKMKFGHHGGNHPVRN---------NRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSC 385 (415)
T ss_pred EEcHHHHHHHHhcCCeEEECCCCcccceEEEEE---------CCCCCEEEEecCHHHhhccccCCCceEEEEEeCCCCcE
Confidence 9999999999999999999876665543 2221 11111245789999998 6899999999987 78999
Q ss_pred EEEEECCCcEEEEecCCCCCCCccc
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEG 186 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g 186 (531)
+|+++++.++||+|||||..+.+..
T Consensus 386 egi~~~~~pi~gVQFHPEa~pgp~D 410 (415)
T PLN02771 386 AGLAFPALNVMSLQYHPEASPGPHD 410 (415)
T ss_pred EEEEECCCCEEEEEcCCCCCCCCCc
Confidence 9999999999999999999887643
No 60
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.95 E-value=5.1e-28 Score=229.13 Aligned_cols=151 Identities=26% Similarity=0.422 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCC---C-CCCC----------ChHHHHHHHHhC
Q 039743 17 YTHLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHS---P-DAPA----------FPAGFLEWALSN 80 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~---~-~~~~----------~~~~l~~~~~~~ 80 (531)
++++++++|+++|+.++++|++.+.+++. ..++|||||||||+...+ + ..++ ....+++.+.+.
T Consensus 20 ~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 99 (189)
T cd01745 20 LNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALER 99 (189)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHC
Confidence 46789999999999999999886654432 467999999999985321 1 1111 124567777788
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCc
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGA 160 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~ 160 (531)
++||||||+|||+|+.++||+|.+.. .++++|++.|.++|++++++|.++++.
T Consensus 100 ~~PilgiC~G~Q~l~~~~Gg~v~~~~---------------------------~v~~~H~~~v~~~~~~~~vla~~~d~~ 152 (189)
T cd01745 100 GKPILGICRGMQLLNVALGGTLYQDI---------------------------RVNSLHHQAIKRLADGLRVEARAPDGV 152 (189)
T ss_pred CCCEEEEcchHHHHHHHhCCeEEcCC---------------------------ceechHHHHHhhcCCCCEEEEECCCCc
Confidence 99999999999999999999997753 467889999999999999999999999
Q ss_pred EEEEEECC-CcEEEEecCCCCCCC--cccchhhhhhe
Q 039743 161 VAAVENRE-KRLFGLQYHPEVTHS--PEGMETLRYFL 194 (531)
Q Consensus 161 v~ai~~~~-~~i~gvQFHPE~~~~--~~g~~i~~~F~ 194 (531)
++|+++.+ .++||+|||||++++ +.|.+||++|+
T Consensus 153 vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 153 IEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred EEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 99999976 689999999999987 79999999994
No 61
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.95 E-value=5.6e-27 Score=241.14 Aligned_cols=179 Identities=22% Similarity=0.378 Sum_probs=136.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|||+|.+| +|.++|+++|+++.++|++.+.+++...++|||||||||+++.+.. .....++.+.+.++|+|
T Consensus 193 ~~I~viD~g~k~--ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~~~---~~i~~i~~~~~~~~Pil 267 (382)
T CHL00197 193 LKIIVIDFGVKY--NILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSAIH---YGIKTVKKLLKYNIPIF 267 (382)
T ss_pred CEEEEEECCcHH--HHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhHHH---HHHHHHHHHHhCCCCEE
Confidence 579999998665 5999999999999999999887777666899999999999753321 11234455556689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCC-CcEEEEEe-CCCcE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPD-GFEVVARS-QQGAV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~-g~~vla~s-~~~~v 161 (531)
|||+|||+|+.++||++.+.+.++.|.. . +. ..... .....++|++.+ ..+++ ++.+++.+ +++.+
T Consensus 268 GIClGhQlLa~a~Gg~v~k~~~Gh~g~n---~----pv--~~~~~-v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtv 337 (382)
T CHL00197 268 GICMGHQILSLALEAKTFKLKFGHRGLN---H----PS--GLNQQ-VEITSQNHGFAVNLESLAKNKFYITHFNLNDGTV 337 (382)
T ss_pred EEcHHHHHHHHHhCCEEeccCCCCCCCC---E----ec--CCCCc-eEEeecchheEeeccccCCCCcEEEEEECCCCCE
Confidence 9999999999999999998764433321 1 11 12223 123346788877 35665 78998875 68889
Q ss_pred EEEEECCCcEEEEecCCCCCCCccc-chhhhhheeccccc
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEG-METLRYFLFDVCGV 200 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g-~~i~~~F~~~~~~~ 200 (531)
+|+++.+.++||+|||||..+++.+ ..+|++|+ +.|+.
T Consensus 338 egi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv-~~~~~ 376 (382)
T CHL00197 338 AGISHSPKPYFSVQYHPEASPGPHDADYLFEYFI-EIIKH 376 (382)
T ss_pred EEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHH-HHHHh
Confidence 9999999999999999999987764 46999998 66543
No 62
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=3.4e-27 Score=226.08 Aligned_cols=174 Identities=21% Similarity=0.387 Sum_probs=129.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-----CCCChHHHHHHHHhCCC
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-----APAFPAGFLEWALSNGV 82 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-----~~~~~~~l~~~~~~~~i 82 (531)
|+|||||+++..++.++++.++.++.++. +.+++ .++|+||+||+... ... ...+...+ +.+.++++
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~---~~~~l--~~~d~iIlPG~g~~--~~~~~~l~~~gl~~~i-~~~~~~~~ 73 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS---DPETI--ENSKALILPGDGHF--DKAMENLNSTGLRSTI-DKHVESGK 73 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEEC---CHHHh--ccCCEEEECCCCch--HHHHHHHHHcCcHHHH-HHHHHcCC
Confidence 89999999999999999999998877653 33333 47899999998642 111 01223334 44456799
Q ss_pred cEEEeeHHHHHHHHHcC------------------CEEeec-----CcccceeeeEEEe--cCCccccCCCCCceEEEEe
Q 039743 83 YVLGICYGLQLMVQKLD------------------GVVKVG-----EKQEYGRMEILVE--RSSGIFGNKKVGHHQVVWM 137 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~G------------------G~v~~~-----~~~e~G~~~v~~~--~~~~l~~~~~~~~~~~v~~ 137 (531)
|+||||+|||+|+++++ |+|.+. +.++.||..+++. .++++|+++++. +.+|+
T Consensus 74 pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~--~~v~~ 151 (210)
T PRK14004 74 PLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQ--SFFYF 151 (210)
T ss_pred CEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCC--CEEEE
Confidence 99999999999999753 666653 4579999999876 456899999988 89999
Q ss_pred eccCccccCCCCcEEEEEeCC-C-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 138 SHGDEAVVLPDGFEVVARSQQ-G-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 138 ~H~~~v~~lp~g~~vla~s~~-~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+|.+ ..++...+++.+++ + .++|+. .++++||+|||||+++ +.|.+|++||+
T Consensus 152 ~HS~~~-~~~~~l~~sa~~~~~g~~~~a~~-~~~~i~GvQFHPE~s~-~~G~~iL~nfl 207 (210)
T PRK14004 152 IHSYRP-TGAEGNAITGLCDYYQEKFPAVV-EKENIFGTQFHPEKSH-THGLKLLENFI 207 (210)
T ss_pred eceeec-CCCCcceEEEeeeECCEEEEEEE-ecCCEEEEeCCcccCc-hhHHHHHHHHH
Confidence 999853 22333444454443 2 244555 4788999999999999 69999999997
No 63
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.94 E-value=1.7e-26 Score=220.72 Aligned_cols=180 Identities=19% Similarity=0.265 Sum_probs=136.4
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCC
Q 039743 7 LVLILDYG---SQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~i 82 (531)
||+|+=+. ..+...+.++++++|.+++++..+.+ +++ .++|+|||+||++++++.... .-..+.++.+.++++
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l--~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDL--PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGL 78 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHh--ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCC
Confidence 45555332 33455788999999998888776543 333 578999999999876532111 112455666677899
Q ss_pred cEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCc
Q 039743 83 YVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGF 150 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~ 150 (531)
|+||||+|||+|+.++|| .|...+..+.|+.++++.++ .+++.++++. +.++++|++.+..+|+++
T Consensus 79 pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~H~~~v~~lp~~~ 156 (200)
T PRK13527 79 PILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP--FHAVFIRAPAITKVGGDV 156 (200)
T ss_pred eEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccEEEeEeccccCCc--ceEEEEccccccccCCCe
Confidence 999999999999999998 55555666788888766431 2457777777 999999999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 151 EVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 151 ~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++|+++++.+ +++. +++||+|||||+++. .++|++|+ +.+
T Consensus 157 ~~la~~~~~~~-a~~~--~~~~g~QfHPE~~~~---~~l~~~f~-~~~ 197 (200)
T PRK13527 157 EVLAKLDDRIV-AVEQ--GNVLATAFHPELTDD---TRIHEYFL-KKV 197 (200)
T ss_pred EEEEEECCEEE-EEEE--CCEEEEEeCCCCCCC---CHHHHHHH-HHH
Confidence 99999999876 5653 689999999999875 78999998 444
No 64
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.94 E-value=2.6e-25 Score=238.79 Aligned_cols=181 Identities=25% Similarity=0.342 Sum_probs=138.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC----hHHHHHHHHhC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF----PAGFLEWALSN 80 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~----~~~l~~~~~~~ 80 (531)
..+|+|||||.++.+++.++++++|+.+.+++. .+++ .++|+|||+||.+.. ...+.+ ..+.++.+.+.
T Consensus 6 ~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~---~~~l--~~~D~lIlpG~gs~~--~~m~~L~~~gl~~~i~~~i~~ 78 (538)
T PLN02617 6 DSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT---PEDI--LNADRLIFPGVGAFG--SAMDVLNNRGMAEALREYIQN 78 (538)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC---hhhh--ccCCEEEECCCCCHH--HHHHHHHHcCHHHHHHHHHHc
Confidence 368999999999999999999999999887753 2233 578999999865521 100010 13455556678
Q ss_pred CCcEEEeeHHHHHHHHHc---------C---CEEeec------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCc
Q 039743 81 GVYVLGICYGLQLMVQKL---------D---GVVKVG------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDE 142 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~---------G---G~v~~~------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~ 142 (531)
++|+||||+|||+|++++ | |+|.+. ..+++||+.+.+..+++++.+++ . ..++++|+|.
T Consensus 79 g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~spL~~~l~-~--~~vy~vHSy~ 155 (538)
T PLN02617 79 DRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKDSELLDGVG-G--RHVYFVHSYR 155 (538)
T ss_pred CCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCCChhHhcCC-C--cEEEEEeEEE
Confidence 999999999999999873 3 777664 23579999999888889998885 4 6799999999
Q ss_pred cccCCCCcE-EEEEeC--CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 143 AVVLPDGFE-VVARSQ--QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 143 v~~lp~g~~-vla~s~--~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+..+|++.. +++.++ ++.++|+++ +++||+|||||+++ ..|.++|++|+...+
T Consensus 156 v~~~p~~~~~v~a~~~~g~~~IaAI~~--gnI~GVQFHPE~s~-~~G~~L~~nFl~~~~ 211 (538)
T PLN02617 156 ATPSDENKDWVLATCNYGGEFIASVRK--GNVHAVQFHPEKSG-ATGLSILRRFLEPKS 211 (538)
T ss_pred EEecCCCCcEEEEEEccCCCcEEEEEe--CCEEEEEcCCccCc-hhHHHHHHHHHHhhh
Confidence 877776544 444443 458899986 58999999999998 789999999985555
No 65
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.94 E-value=8.3e-26 Score=223.50 Aligned_cols=176 Identities=22% Similarity=0.357 Sum_probs=140.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+++|||... +|.|.|.+.|+++.++|++.+.+++...+||||+||-||+++.. -......++..++..+|+|
T Consensus 180 ~~Vv~iD~GvK~--nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~---~~~~i~~ik~l~~~~iPif 254 (368)
T COG0505 180 KHVVVIDFGVKR--NILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAP---LDYAIETIKELLGTKIPIF 254 (368)
T ss_pred cEEEEEEcCccH--HHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhH---HHHHHHHHHHHhccCCCeE
Confidence 479999999864 69999999999999999999999988899999999999996411 1112245566667788999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v~ 162 (531)
|||+|||+|+.|+|++..++.-++.|.+ .|. +++........-++|++.|. ++++..+++..+ +|+.++
T Consensus 255 GICLGHQllalA~Ga~T~KmkFGHrG~N-------hPV-~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvE 326 (368)
T COG0505 255 GICLGHQLLALALGAKTYKMKFGHRGAN-------HPV-KDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVE 326 (368)
T ss_pred EEcHHHHHHHHhcCCceeecccCCCCCC-------cCc-ccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCcc
Confidence 9999999999999999999864444432 222 23333334567789999995 566554777777 789999
Q ss_pred EEEECCCcEEEEecCCCCCCCc-ccchhhhhhe
Q 039743 163 AVENREKRLFGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
++++.+.|+|.+|||||-++.+ +-..+|+.|+
T Consensus 327 Gi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi 359 (368)
T COG0505 327 GIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFI 359 (368)
T ss_pred ceecCCCceEEEccCCCCCCCCcccHHHHHHHH
Confidence 9999999999999999999877 5678999997
No 66
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.93 E-value=8.7e-26 Score=218.11 Aligned_cols=160 Identities=22% Similarity=0.346 Sum_probs=117.0
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCC----CCCC-CCC----------ChHHHHHHHHhC
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSV----HSPD-APA----------FPAGFLEWALSN 80 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~----~~~~-~~~----------~~~~l~~~~~~~ 80 (531)
.+.++++++++|..+.++|+..+.+++. ...+||||||||..++ |.+. .+. ++..+++.+.++
T Consensus 26 ~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~ 105 (217)
T PF07722_consen 26 AASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR 105 (217)
T ss_dssp EHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999987665543 5689999999999543 3222 111 223566677778
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcc------------cceeeeEEEecCCccccCCC-CCceEEEEeeccCccccCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQ------------EYGRMEILVERSSGIFGNKK-VGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~------------e~G~~~v~~~~~~~l~~~~~-~~~~~~v~~~H~~~v~~lp 147 (531)
++||||||+|||+|+.++||++...-.. ....+.+.+.+++.|.+-+. .. ..|+++|+++|..++
T Consensus 106 ~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~~~~--~~vns~Hhq~v~~l~ 183 (217)
T PF07722_consen 106 GKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILGSEE--IEVNSFHHQAVKPLG 183 (217)
T ss_dssp T--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSHHCT--EEEEEEECEEECCHH
T ss_pred CCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccCchHHHHhCcCc--ceeecchhhhhhccC
Confidence 9999999999999999999998875322 34566777877777666665 45 899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEECCC--cEEEEecCCC
Q 039743 148 DGFEVVARSQQGAVAAVENREK--RLFGLQYHPE 179 (531)
Q Consensus 148 ~g~~vla~s~~~~v~ai~~~~~--~i~gvQFHPE 179 (531)
++|+++|.+.|+.++||+..++ +++|+|||||
T Consensus 184 ~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 184 EGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred CCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 9999999999999999999885 5999999999
No 67
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.92 E-value=3.5e-24 Score=208.49 Aligned_cols=184 Identities=21% Similarity=0.260 Sum_probs=136.9
Q ss_pred EEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC-----CCChHHHHHHHHhC
Q 039743 7 LVLILDYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA-----PAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~-----~~~~~~l~~~~~~~ 80 (531)
+|+||||++++ .+.++++++++|+++++++++.. . ..++|+|||+||++....... .....+.++.+.+.
T Consensus 2 ~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~--~--l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 77 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG--S--LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEK 77 (227)
T ss_pred eEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC--C--CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHc
Confidence 69999997665 67899999999999999887532 1 357899999999863111100 01123456666778
Q ss_pred CCcEEEeeHHHHHHHHH--cCCEEeecCccccee--eeEEEec-CCccccCCCCCceEEEEeeccCcc--------ccCC
Q 039743 81 GVYVLGICYGLQLMVQK--LDGVVKVGEKQEYGR--MEILVER-SSGIFGNKKVGHHQVVWMSHGDEA--------VVLP 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~--~GG~v~~~~~~e~G~--~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v--------~~lp 147 (531)
++||+|||+|+|+|+.+ ++|++.++...+|+. ..+++.. .++++++++....+.++.+|++.. .+|.
T Consensus 78 g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~ 157 (227)
T TIGR01737 78 GVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLE 157 (227)
T ss_pred CCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHH
Confidence 99999999999999995 899999987777755 5555543 367888888653344445898765 3455
Q ss_pred CCcEEEEEe------------CC---CcEEEEEECCCcEEEEecCCCCC-----CCcccchhhhhhe
Q 039743 148 DGFEVVARS------------QQ---GAVAAVENREKRLFGLQYHPEVT-----HSPEGMETLRYFL 194 (531)
Q Consensus 148 ~g~~vla~s------------~~---~~v~ai~~~~~~i~gvQFHPE~~-----~~~~g~~i~~~F~ 194 (531)
+...++... ++ +.|+++.+++++++|+|||||+. .+++|..||+||+
T Consensus 158 ~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~ 224 (227)
T TIGR01737 158 SNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224 (227)
T ss_pred HCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHH
Confidence 555655544 23 36899999999999999999998 6789999999997
No 68
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.91 E-value=8.2e-24 Score=185.94 Aligned_cols=190 Identities=22% Similarity=0.384 Sum_probs=153.9
Q ss_pred EEEEEeCCCCcHHHHHHHH-HHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 7 LVLILDYGSQYTHLITRRI-RSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l-~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
.|+++|..++|+-.+...| -+.|+.++++..|. ..+++...++++++||.||+.+.|. .+..+.+.+ ....+|+
T Consensus 20 piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~Ds---GIs~~~i~~-f~~~iP~ 95 (223)
T KOG0026|consen 20 PIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDS---GISLQTVLE-LGPLVPL 95 (223)
T ss_pred CEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccc---cchHHHHHH-hCCCCce
Confidence 4899999999999999988 67899999988765 5677778899999999999987643 334444433 2457999
Q ss_pred EEeeHHHHHHHHHcCCEEeecC-cccceeee-EEEec--CCccccCCCCCceEEEEeeccCcc--ccCC-CCcEEEEEeC
Q 039743 85 LGICYGLQLMVQKLDGVVKVGE-KQEYGRME-ILVER--SSGIFGNKKVGHHQVVWMSHGDEA--VVLP-DGFEVVARSQ 157 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~-~~e~G~~~-v~~~~--~~~l~~~~~~~~~~~v~~~H~~~v--~~lp-~g~~vla~s~ 157 (531)
||||.|.|.|..+|||+|.+.+ .--+|... ++.+. +..+|+++++. +.|-.+|+-.. .++| +.++++|+++
T Consensus 96 fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~--~~V~RYHSLa~~~sSlP~d~L~VTawTE 173 (223)
T KOG0026|consen 96 FGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNP--FIVGRYHSLVIEKDSFPSDELEVTAWTE 173 (223)
T ss_pred eeeehhhhhhhhhhCcEEeccCcceeeccccccccCCccccccccCCCCC--eEEEeeeeeeeecccCCccceeeeEecc
Confidence 9999999999999999999875 22344332 43332 24699999999 99999998765 5788 7899999999
Q ss_pred CCcEEEEEECCCc-EEEEecCCCCCCCcccchhhhhheecccccccccc
Q 039743 158 QGAVAAVENREKR-LFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWK 205 (531)
Q Consensus 158 ~~~v~ai~~~~~~-i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~ 205 (531)
++.+++.+|+++. +-|+|||||.--++.|+.+++||+ ++.. +.|.
T Consensus 174 nG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNfl-ni~~--~tWe 219 (223)
T KOG0026|consen 174 DGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI-KIVE--KKWS 219 (223)
T ss_pred CcEEEeeeccccccccceeecchhhhhhhhHHHHHHHH-Hhcc--cchh
Confidence 9999999998887 889999999999999999999998 6553 4554
No 69
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.91 E-value=5.5e-24 Score=199.68 Aligned_cols=166 Identities=22% Similarity=0.347 Sum_probs=113.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~iPv 84 (531)
|+|+|||.++.+++.++++.+|+++.++... +++ .++|+|||||+.....+-. ...+. +.++. +.++|+
T Consensus 2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~~---~~l--~~~D~lIlPG~g~~~~~~~~L~~~gl~-~~i~~--~~g~Pv 73 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNTS---KII--DQAETIILPGVGHFKDAMSEIKRLNLN-AILAK--NTDKKM 73 (192)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeCH---HHh--ccCCEEEECCCCCHHHHHHHHHHCCcH-HHHHH--hCCCeE
Confidence 8999999999999999999999999887532 344 4689999999855111100 01122 33333 458999
Q ss_pred EEeeHHHHHHHHHc--C---------CEEeec----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCC
Q 039743 85 LGICYGLQLMVQKL--D---------GVVKVG----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDG 149 (531)
Q Consensus 85 LGIC~G~Qlla~~~--G---------G~v~~~----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g 149 (531)
||||+|||+|++.. | ++|.+. +.+++||..++. ..++++ ..+++.|++.+. .++.
T Consensus 74 lGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~--~~~l~~-------~~~yFVhSy~v~-~~~~ 143 (192)
T PRK13142 74 IGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS--KHPMLN-------QDVYFVHSYQAP-MSEN 143 (192)
T ss_pred EEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccccCC--CCcccc-------cEEEEECCCeEC-CCCC
Confidence 99999999999965 1 344443 224566665532 223332 368999999983 3343
Q ss_pred cEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 150 FEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 150 ~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
...++......+++++ ++++||+|||||.++ ..|.++++||+
T Consensus 144 v~~~~~yg~~~~~~v~--~~n~~g~QFHPEkS~-~~G~~ll~nf~ 185 (192)
T PRK13142 144 VIAYAQYGADIPAIVQ--FNNYIGIQFHPEKSG-TYGLQILRQAI 185 (192)
T ss_pred EEEEEECCCeEEEEEE--cCCEEEEecCcccCc-HhHHHHHHHHH
Confidence 3333333222455554 589999999999988 89999999997
No 70
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.91 E-value=4.7e-25 Score=215.79 Aligned_cols=196 Identities=28% Similarity=0.386 Sum_probs=143.2
Q ss_pred hhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 210 LDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 210 ~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
++.+..+|++++.. .+++++++|||+||+|+|+|+++++| .+++||+++++..++.+.+++.+ +|+.||+++.++|
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~-la~~lgi~~~~i~ 80 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKE-LAEKLGIEYIVID 80 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHH-HHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHH-HHHHhCCCeeccc
Confidence 34555666666542 46899999999999999999999997 79999999999998888888877 9999999999999
Q ss_pred CchHHHHhhcCCCCcc---cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 287 ATDQFLSKLKGVIDPE---TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p~---~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+++.+....+.+.... ...++..+.+..++...|.. .++++.||.. ..|. ..|+ .|+
T Consensus 81 i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~--------~~~lVlgT~N--~sE~--~~Gy--------~T~ 140 (242)
T PF02540_consen 81 IDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANK--------YNYLVLGTGN--KSEL--LLGY--------FTK 140 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTEEEBE--C--HHHH--HHTC--------SHT
T ss_pred hHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcc--------cceEEecCCc--HHHh--hcCc--------ccc
Confidence 9876644333221111 11222222333344555544 4578888843 2332 1344 788
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHH
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFI 438 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~ 438 (531)
|++++. .+.||.+|+|+||+++|+++|+|++++++.|+++ | ++|+.+++.|+-.+++.|.++.
T Consensus 141 ~GD~~~-------d~~Pi~~L~K~eV~~la~~l~ip~~ii~k~Psa~--L---~~gqtDE~elg~~Y~~lD~~l~ 203 (242)
T PF02540_consen 141 YGDGAG-------DIAPIADLYKTEVRELARYLGIPEEIIEKPPSAG--L---WPGQTDEDELGFSYEELDAILR 203 (242)
T ss_dssp TTTTSS-------SBETTTTS-HHHHHHHHHHTTCGHHHHCS--BHH--S---STT-BHHHHHTSTHHHHHHHHH
T ss_pred cCcccc-------cceeeCCcCHHHHHHHHHHHhhHHHHhcCCCCCC--C---CCCCCCHHHhCCCHHHHHHHHH
Confidence 888766 7899999999999999999999999999998765 3 6799999999659999999976
No 71
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.90 E-value=3.7e-23 Score=198.18 Aligned_cols=183 Identities=25% Similarity=0.348 Sum_probs=143.5
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccc
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRK 306 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~ 306 (531)
|+|++|||+||+++++++++..+.+++++|+|+|+....+.+.+.+ +|+++|+++++++++......+.+ +....+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~-~a~~lgi~~~~~~~~~~~~~~~~~--~~~~~~~ 77 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKR-LAKEIGIRHEVIETDELDDPEFAK--NPPDRCY 77 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHH-HHHHcCCcEEEEeCCccccHHHhc--CCCCccc
Confidence 6899999999999999999985569999999999987777777776 899999999999997432222221 2233444
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccc--cC
Q 039743 307 IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLK--LL 384 (531)
Q Consensus 307 ~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~--~l 384 (531)
.+.+.+++.+.+.|++.| ++++++||+.+|..+. .+ ++.......+++||. .+
T Consensus 78 ~~r~~~~~~l~~~a~~~g------~~~I~~G~~~dD~~e~----~~---------------~~~~~~~~~iirPL~~~~~ 132 (202)
T cd01990 78 LCKKALYEALKEIAEELG------LDVVLDGTNADDLGDY----RP---------------GLKALRELGVRSPLAEAGL 132 (202)
T ss_pred hhHHHHHHHHHHHHHHCC------CCEEEEcCccccCccc----Ch---------------HHHHHHHcCCcCchhhcCC
Confidence 555667788888998887 8999999999998873 22 122222356999999 59
Q ss_pred CHHHHHHHHHHcCCCccccccCCCCCCCcccccc--CCCCcchHHHHHhhhhHHHHHHHHHcCc
Q 039743 385 FKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL--GDVTEGNSLDILRQVDEIFIQSIKEAGL 446 (531)
Q Consensus 385 ~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~--g~vt~~~l~~~~~~~d~~~~~~l~~~~~ 446 (531)
+|+||+++|+++|+|. +..| +.+|++.|++ .++|++.+ +.++++|++ |+..|+
T Consensus 133 ~K~ei~~~a~~~gl~~---~~~~-~~~c~~~~~~~~~~~~~~~~-~~~~~~e~~----l~~~~~ 187 (202)
T cd01990 133 GKAEIRELARELGLPT---WDKP-AMACLASRIPYGTEITEERL-KKVEAAEEF----LRSLGF 187 (202)
T ss_pred CHHHHHHHHHHcCCCC---cCCC-CcchHHhhCcCCCCCCHHHH-HHHHHHHHH----HHHcCC
Confidence 9999999999999995 6777 6689999997 46799999 999999988 555554
No 72
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.90 E-value=2.6e-23 Score=207.11 Aligned_cols=185 Identities=15% Similarity=0.199 Sum_probs=134.4
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC-----CcEEEeeHH
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG-----VYVLGICYG 90 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~-----iPvLGIC~G 90 (531)
..+++++++++|+.+..++.+.+.+++. ...+|||+++||+.++...........+++.+++.+ +|+||||+|
T Consensus 22 ~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG 101 (273)
T cd01747 22 AASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG 101 (273)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence 4569999999999988887764434432 467899999999977642221222356888887654 899999999
Q ss_pred HHHHHHHcCCEEee-cCc-ccceeeeEEEec---CCccccCCCCC------ceEEEEeeccCccc--cCC------CCcE
Q 039743 91 LQLMVQKLDGVVKV-GEK-QEYGRMEILVER---SSGIFGNKKVG------HHQVVWMSHGDEAV--VLP------DGFE 151 (531)
Q Consensus 91 ~Qlla~~~GG~v~~-~~~-~e~G~~~v~~~~---~~~l~~~~~~~------~~~~v~~~H~~~v~--~lp------~g~~ 151 (531)
||+|+.++||++.. ... .+.+..+++++. ++++|++++.. ....++++|++++. .+| ..++
T Consensus 102 ~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~ 181 (273)
T cd01747 102 FELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFN 181 (273)
T ss_pred HHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceE
Confidence 99999999997543 332 344557788775 46889888652 11468899999984 444 4578
Q ss_pred EEEEeCC--C--cEEEEEECCCcEEEEecCCCCCCCcccc--------------hhhhhheeccccccc
Q 039743 152 VVARSQQ--G--AVAAVENREKRLFGLQYHPEVTHSPEGM--------------ETLRYFLFDVCGVNA 202 (531)
Q Consensus 152 vla~s~~--~--~v~ai~~~~~~i~gvQFHPE~~~~~~g~--------------~i~~~F~~~~~~~~~ 202 (531)
++|.+.+ + .++++++.+.++||+|||||.+..+.+. +.+.+|+.+.|+.+.
T Consensus 182 vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~ 250 (273)
T cd01747 182 VLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSN 250 (273)
T ss_pred EEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998755 3 4689999888999999999977655432 337778878887764
No 73
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.89 E-value=7.4e-23 Score=199.32 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=123.6
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCh-hcc----ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHH
Q 039743 19 HLITRRIRSLSILSLCLSGTCSL-DDI----TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQL 93 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~-~~~----~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Ql 93 (531)
..+..+..+++..+++.+.+.+. +.. .+.++||||++|||+..... -...+++.+.++++|+||||+|||+
T Consensus 21 ~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~~~----~~~~~i~~~~~~~~PvlGIClG~Q~ 96 (235)
T cd01746 21 EALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRGVE----GKILAIKYARENNIPFLGICLGMQL 96 (235)
T ss_pred HHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcchh----hHHHHHHHHHHCCceEEEEEhHHHH
Confidence 34445555566666665544321 111 14678999999999754322 1235677888889999999999999
Q ss_pred HHHHcCCEEeecCcc------------------------------cceeeeEEEecCCccccCCCCCceEEEEeeccCcc
Q 039743 94 MVQKLDGVVKVGEKQ------------------------------EYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA 143 (531)
Q Consensus 94 la~~~GG~v~~~~~~------------------------------e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v 143 (531)
|+.++||++.+.+.. +.|.+.+.+.+++.+.+-++.+ ...+.+.|++.|
T Consensus 97 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~-~~~~n~~H~~~v 175 (235)
T cd01746 97 AVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKD-EVEERHRHRYEV 175 (235)
T ss_pred HHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCC-EEEEecCccccc
Confidence 999999988753211 1124667777777776655544 368899999987
Q ss_pred c-----c-CCCCcEEEEEeC-CCcEEEEEECCCcEE-EEecCCCCCCCc-ccchhhhhhe
Q 039743 144 V-----V-LPDGFEVVARSQ-QGAVAAVENREKRLF-GLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 144 ~-----~-lp~g~~vla~s~-~~~v~ai~~~~~~i~-gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
. . +.++++++|.+. ++.|+|++.++.++| |+|||||....+ ....+|++|+
T Consensus 176 ~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 176 NPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred CHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 3 3 378999999998 899999999888876 999999987543 3568999885
No 74
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.89 E-value=5.3e-23 Score=193.81 Aligned_cols=168 Identities=19% Similarity=0.243 Sum_probs=120.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCCcEEE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~iPvLG 86 (531)
|.|+-+.+.+...+ ++++++|+++..+.... + ..++||||++||+.+.++.... ....+.++.+.++++|+||
T Consensus 1 igvl~~qg~~~e~~-~~l~~~g~~v~~v~~~~---~--l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlG 74 (183)
T cd01749 1 IGVLALQGDFREHI-RALERLGVEVIEVRTPE---D--LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFG 74 (183)
T ss_pred CEEEEecCCcHHHH-HHHHHCCCeEEEECCHH---H--hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEE
Confidence 45565655565444 99999999988876532 2 3568999999999866543111 1123456666778999999
Q ss_pred eeHHHHHHHHHcCC------------EEeecC-cccceeeeEEEecCCccccCCC-CCceEEEEeeccCccccCCCCcEE
Q 039743 87 ICYGLQLMVQKLDG------------VVKVGE-KQEYGRMEILVERSSGIFGNKK-VGHHQVVWMSHGDEAVVLPDGFEV 152 (531)
Q Consensus 87 IC~G~Qlla~~~GG------------~v~~~~-~~e~G~~~v~~~~~~~l~~~~~-~~~~~~v~~~H~~~v~~lp~g~~v 152 (531)
||+|||+|+.++|+ +|.+++ .++.|+...++ .+.+.+ +. +.++++|.+.|..+|+++++
T Consensus 75 iC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l-----~~~~~~~~~--~~~~~~h~~~v~~~p~~~~~ 147 (183)
T cd01749 75 TCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADL-----DIPGLGLGP--FPAVFIRAPVIEEVGPGVEV 147 (183)
T ss_pred ECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceEEEcC-----CCCcCCCCc--cEEEEEECcEEEEcCCCcEE
Confidence 99999999999998 455432 22344333322 233442 45 89999999999999999999
Q ss_pred EEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 153 VARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 153 la~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+++.+++ |++. +++||+|||||++.. .++++.|+
T Consensus 148 la~~~~~~~-a~~~--~~~~g~qfHPE~~~~---~~~~~~f~ 183 (183)
T cd01749 148 LAEYDGKIV-AVRQ--GNVLATSFHPELTDD---TRIHEYFL 183 (183)
T ss_pred EEecCCEEE-EEEE--CCEEEEEcCCccCCC---cchhhhhC
Confidence 999988775 7774 479999999999864 46777764
No 75
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.89 E-value=1.6e-22 Score=190.15 Aligned_cols=168 Identities=19% Similarity=0.280 Sum_probs=120.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CCCCChHHHHHHHHhCCCcE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~~~~~~~l~~~~~~~~iPv 84 (531)
||+|+.+.+.|.. ..++++++|++++++... +++ .++|+|||+||++++.+. ....+ ...++.+.++++|+
T Consensus 1 ~igvl~~qg~~~e-~~~~l~~~g~~~~~v~~~---~~l--~~~d~liipGG~~~~~~~l~~~~~l-~~~i~~~~~~g~pi 73 (184)
T TIGR03800 1 KIGVLALQGAVRE-HARALEALGVEGVEVKRP---EQL--DEIDGLIIPGGESTTLSRLLDKYGM-FEPLRNFILSGLPV 73 (184)
T ss_pred CEEEEEccCCHHH-HHHHHHHCCCEEEEECCh---HHh--ccCCEEEECCCCHHHHHHHHHhccH-HHHHHHHHHcCCcE
Confidence 4888888877754 669999999999887542 222 568999999998865332 11122 34456667789999
Q ss_pred EEeeHHHHHHHHHcC-----------CEEeecCc-ccceeeeEEEecCCccccCCC-CCceEEEEeeccCccccCCCCcE
Q 039743 85 LGICYGLQLMVQKLD-----------GVVKVGEK-QEYGRMEILVERSSGIFGNKK-VGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 85 LGIC~G~Qlla~~~G-----------G~v~~~~~-~e~G~~~v~~~~~~~l~~~~~-~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
||||+|||+|++++. +++.++.. ++.|.....++. +++. +. +..+++|.+.|..+|++++
T Consensus 74 lGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~-----~~~~~~~--~~~~~~h~~~v~~lp~~~~ 146 (184)
T TIGR03800 74 FGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDI-----KGVGDDP--ITGVFIRAPKIVSVGNGVE 146 (184)
T ss_pred EEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEEEEeec-----ccCCCCc--ceEEEEcCCCcccCCCCeE
Confidence 999999999999973 45555432 233333333321 2222 23 7788999999999999999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|+++++.+ |++. +++||+|||||+++. .++++.|+
T Consensus 147 vla~~~~~~~-a~~~--~~~~gvQfHPE~~~~---~~~~~~f~ 183 (184)
T TIGR03800 147 ILAKVGNRIV-AVRQ--GNILVSSFHPELTDD---HRVHEYFL 183 (184)
T ss_pred EEEEeCCeeE-EEEe--CCEEEEEeCCccCCC---chHHHHhh
Confidence 9999988764 6553 479999999999854 47888886
No 76
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.88 E-value=4.1e-22 Score=207.40 Aligned_cols=190 Identities=21% Similarity=0.235 Sum_probs=141.8
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCCh-hHHHHHHHHHHHhC---C--CcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY-KERERVMDTFEKDL---H--LPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~-~e~~~~~~~la~~l---g--i~~~vvd~~~~f~~~ 294 (531)
++..+++++++|||+||+|+++++++. |.+++++|+|+|.... .+.+.+.+ +|+.+ + +++.++|+.+.+. .
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~kr-G~~V~av~~~~~~~~~~~~~~~v~~-l~~~l~~~~~~~~l~~v~~~~~~~-~ 245 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMKR-GCRVVAVHFFNEPAASEKAREKVER-LANSLNETGGSVKLYVFDFTDVQE-E 245 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHHc-CCeEEEEEEeCCCCccHHHHHHHHH-HHHHHhhcCCCceEEEEeCHHHHH-H
Confidence 456789999999999999999999987 9999999999987654 44444444 78766 3 5888899876543 3
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+....++...|..|.+.|++++..+|++.| ++.|++||+.+|+.+. +..|+.++....+
T Consensus 246 i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g------~~~I~tG~~l~d~asq---------------tl~nl~~i~~~~~ 304 (371)
T TIGR00342 246 IIHIIPEGYTCVLCRRMMYKAASKVAEKEG------CLAIVTGESLGQVASQ---------------TLENLRVIQAVSN 304 (371)
T ss_pred HHhcCCCCceeHhHHHHHHHHHHHHHHHcC------CCEEEEccChHhhhcc---------------HHHHHHHHhccCC
Confidence 322223334444455557788889999888 8999999999998642 2233333333345
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
..+++||..++|+||+++|+++|+.+ ++..|+..||...+..-++|++++ +.++++|+.+
T Consensus 305 ~~I~rPLi~~~K~EIi~~a~~iG~~~--~s~~~~~~c~~~~~~~~p~t~~~~-~~i~~~E~~l 364 (371)
T TIGR00342 305 TPILRPLIGMDKEEIIELAKEIGTYE--ISIEPHEDCCTIFKPKHPTTKAKP-EKVEKLEEKL 364 (371)
T ss_pred CCEEeCCCCCCHHHHHHHHHHhCCcc--eeecCCCceeEeecCCCCccCCCH-HHHHHHHhcC
Confidence 67999999999999999999999653 455676777775555577899999 8888887764
No 77
>PRK13980 NAD synthetase; Provisional
Probab=99.88 E-value=2.8e-22 Score=199.72 Aligned_cols=204 Identities=25% Similarity=0.333 Sum_probs=148.8
Q ss_pred ccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcE
Q 039743 206 LENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPV 282 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~ 282 (531)
.+...+.+...+++++.. .++++|++|||+||+++++++.+++| .++++++++++..+..+.+.+.+ +|+.+|+++
T Consensus 10 ~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~-la~~lgi~~ 88 (265)
T PRK13980 10 YEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAEL-VAEDLGIEY 88 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHH-HHHHhCCCe
Confidence 344456667777777653 36899999999999999999999987 79999999999877777777776 899999999
Q ss_pred EEEECchHHHHhhcCCCC--cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccc
Q 039743 283 TCVDATDQFLSKLKGVID--PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360 (531)
Q Consensus 283 ~vvd~~~~f~~~l~~~~~--p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~i 360 (531)
+++++++.+..-...+.+ +...+.++.+.++.++..+|++.| + ++.||...+ | ...|+
T Consensus 89 ~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g------~--lvlgTgn~s--E--~~~G~-------- 148 (265)
T PRK13980 89 KVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANREN------R--LVLGTGNKS--E--LLLGY-------- 148 (265)
T ss_pred EEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcC------C--EEEcCCCHh--H--HHhCC--------
Confidence 999998543222222211 112234555556667788888765 3 455553221 1 11233
Q ss_pred ccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHH
Q 039743 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQS 440 (531)
Q Consensus 361 kt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~ 440 (531)
.|.+++++. .++||.+|+|+|||++|+++|+|++++.+.|+++ | .+|+.+++.++-.++..|.++...
T Consensus 149 ~t~~gD~~~-------~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~--L---~~~q~De~~lg~~Y~~lD~~l~~~ 216 (265)
T PRK13980 149 FTKYGDGAV-------DLNPIGDLYKTQVRELARHLGVPEDIIEKPPSAD--L---WEGQTDEGELGFSYETIDEILYLL 216 (265)
T ss_pred ccCCCCccc-------CcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcC--C---CCCCCCHHHcCCCHHHHHHHHHHH
Confidence 456666544 6899999999999999999999988888877664 4 369999999965899999997654
Q ss_pred HH
Q 039743 441 IK 442 (531)
Q Consensus 441 l~ 442 (531)
+.
T Consensus 217 ~~ 218 (265)
T PRK13980 217 FD 218 (265)
T ss_pred HH
Confidence 43
No 78
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.87 E-value=4.6e-22 Score=208.61 Aligned_cols=188 Identities=18% Similarity=0.253 Sum_probs=140.4
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCC-CCChhHHHHHHHHHHHhCC-----CcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNG-LLRYKERERVMDTFEKDLH-----LPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g-~~~~~e~~~~~~~la~~lg-----i~~~vvd~~~~f~~~ 294 (531)
++..+++++++|||+||+|+|+++++. |.+++++|+++. +.++.+.+.+.+ +|+.++ ++++++|+++.. ..
T Consensus 173 ~g~~gkvvvllSGGiDS~vaa~l~~k~-G~~v~av~~~~~~~~~~~~~~~~~~-~a~~l~~~~~~i~~~vv~~~~~~-~~ 249 (394)
T PRK01565 173 VGTSGKALLLLSGGIDSPVAGYLAMKR-GVEIEAVHFHSPPYTSERAKEKVID-LARILAKYGGRIKLHVVPFTEIQ-EE 249 (394)
T ss_pred cCCCCCEEEEECCChhHHHHHHHHHHC-CCEEEEEEEeCCCCCcHHHHHHHHH-HHHHHHHhcCCCcEEEEECHHHH-HH
Confidence 566789999999999999999999886 999999999763 344455555554 677664 999999998754 33
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+.....+...+..+.+.|++++..+|++.| ++.|++|++.+|+.+ .+..|+.++....+
T Consensus 250 i~~~~~~~~~~v~~Rr~~~~~a~~~A~~~g------~~~IvtG~~~~d~~s---------------qt~~~l~~i~~~~~ 308 (394)
T PRK01565 250 IKKKVPESYLMTLMRRFMMRIADKIAEKRG------ALAIVTGESLGQVAS---------------QTLESMYAINAVTN 308 (394)
T ss_pred HhhcCCCceEEEeHHHHHHHHHHHHHHHcC------CCEEEEccccccccH---------------HHHHHHHHHhhccC
Confidence 332221212244566668888899999888 899999999999853 11222223333345
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccc-c-CCCCcchHHHHHhhhhHHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV-L-GDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~-~-g~vt~~~l~~~~~~~d~~~ 437 (531)
+.+++||..++|+||+++|+++|+++ +|..|...|| +|+ + .++|++++ +.++++|+.+
T Consensus 309 ~~V~rPLig~~K~EI~~lAr~iG~~~--~s~~p~~~cc--~~~~~~~p~t~~~l-~~v~~~E~~l 368 (394)
T PRK01565 309 LPVLRPLIGMDKEEIIEIAKEIGTYD--ISILPYEDCC--TIFAPKNPKTKPKL-EKAEKYESRL 368 (394)
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCHH--HhcCCCcCee--eeecCCCCccCCCH-HHHHHHHhcC
Confidence 78999999999999999999999854 4677856555 688 4 56899999 9999988775
No 79
>PTZ00323 NAD+ synthase; Provisional
Probab=99.87 E-value=9.8e-22 Score=196.36 Aligned_cols=220 Identities=16% Similarity=0.064 Sum_probs=155.4
Q ss_pred ccccccccccccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCC-c-----EEEEEEeCCCCChhHH
Q 039743 196 DVCGVNAGWKLENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGD-R-----LHCVFVDNGLLRYKER 267 (531)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~-~-----v~~v~id~g~~~~~e~ 267 (531)
+..+.++.|++..+++.+...|++++.. .++++||+|||+||+++|+++++++|. + ++++..+. ..+..+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~-~ss~~~~ 94 (294)
T PTZ00323 16 KEVRRKRAFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPI-HSSAWAL 94 (294)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCC-CCCHHHH
Confidence 5557899999999999999999998764 579999999999999999999999985 2 45555553 2355677
Q ss_pred HHHHHHHHHhCCCcEEEEECchHHHHh---hcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecc-c
Q 039743 268 ERVMDTFEKDLHLPVTCVDATDQFLSK---LKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGT-L 339 (531)
Q Consensus 268 ~~~~~~la~~lgi~~~vvd~~~~f~~~---l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt-~ 339 (531)
+++.+ +|+.+|++++++|+++.+... +.............++. +......+|.... ..+...|+.|| |
T Consensus 95 ~~A~~-la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~---~~g~~~lV~GT~N 170 (294)
T PTZ00323 95 NRGRE-NIQACGATEVTVDQTEIHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLS---QEGTPAVVMGTGN 170 (294)
T ss_pred HHHHH-HHHHhCCcEEEEECcHHHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHh---hcCCCeEEECCCC
Confidence 77776 899999999999999766222 21110000000001111 1122233333222 12367999999 8
Q ss_pred CCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccC
Q 039743 340 YPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLG 419 (531)
Q Consensus 340 ~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g 419 (531)
.+|... .|. +|.++++.. .+.|+.+++|+|||++|+++|+|+++ +..| |.|||. .|
T Consensus 171 ~sE~~~----~Gy--------~t~~GDg~~-------d~~pia~L~K~eVr~LAr~l~lp~~i-~~kp-pSA~L~---~~ 226 (294)
T PTZ00323 171 FDEDGY----LGY--------FCKAGDGVV-------DVQLISDLHKSEVFLVARELGVPENT-LQAA-PSADLW---EG 226 (294)
T ss_pred chhhhH----hch--------HhhcCCCCc-------CchhhcCCcHHHHHHHHHHcCCCHHH-hcCC-CCcCcC---CC
Confidence 887532 233 677777655 77999999999999999999999664 5556 677884 68
Q ss_pred CCCcchHHHHHhhhhHHHHHHHHHc
Q 039743 420 DVTEGNSLDILRQVDEIFIQSIKEA 444 (531)
Q Consensus 420 ~vt~~~l~~~~~~~d~~~~~~l~~~ 444 (531)
+.+++.++-.++..|.++...++..
T Consensus 227 qtDE~elg~~Y~~lD~~~~~~~~~~ 251 (294)
T PTZ00323 227 QTDEDELGFPYDFVELYTEWYLKLN 251 (294)
T ss_pred CcCHhhcCCCHHHHHHHHHHHHHhh
Confidence 9999999558888888876655543
No 80
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.86 E-value=7.5e-22 Score=194.98 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=149.7
Q ss_pred chhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 208 NVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
...+.+...|++++.. .++++|++|||+||+++|+++++++| .++++++++++..+..+.+.+.+ +|+.+|+++++
T Consensus 5 ~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~-~a~~lgi~~~~ 83 (248)
T cd00553 5 EIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKE-LAEALGIEHVN 83 (248)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHH-HHHHhCCeEEE
Confidence 3445566667777632 36899999999999999999999987 89999999999877778877776 89999999999
Q ss_pred EECchHHHHhhcCCC---Ccc----cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcc
Q 039743 285 VDATDQFLSKLKGVI---DPE----TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357 (531)
Q Consensus 285 vd~~~~f~~~l~~~~---~p~----~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~ 357 (531)
+++++.+......+. .+. ..+.++.+.++.++...|++.| +..+.+|+ ..|. +.|.
T Consensus 84 i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~------~~vlgTgn----~~E~--~~G~----- 146 (248)
T cd00553 84 IDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLG------GLVLGTGN----KSEL--LLGY----- 146 (248)
T ss_pred eccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcC------CEEEcCCc----HhHH--HhCC-----
Confidence 999876544332221 111 2244444555567788888776 55555554 3342 1233
Q ss_pred cccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHH
Q 039743 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 358 ~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
.|.++.++ ..++||.+++|+|||++|+++|+|+.++.+.|+++ | .+|+.+++.++-.+...|.++
T Consensus 147 ---~t~~gd~~-------~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~psa~--l---~~~q~de~~lg~~Y~~lD~~l 211 (248)
T cd00553 147 ---FTKYGDGA-------ADINPIGDLYKTQVRELARYLGVPESIIDKPPSAE--L---WPGQTDEDELGMPYEELDQFL 211 (248)
T ss_pred ---eeccCCcc-------cCccccCCCcHHHHHHHHHHHCchHHHhcCCCCcc--c---CCCCCCHHHhCCCHHHHHHHH
Confidence 34455433 38899999999999999999999998888888765 3 459999999955899999997
Q ss_pred HHHHHH
Q 039743 438 IQSIKE 443 (531)
Q Consensus 438 ~~~l~~ 443 (531)
...+.+
T Consensus 212 ~~~~~~ 217 (248)
T cd00553 212 YLRLEG 217 (248)
T ss_pred HHHHhc
Confidence 655543
No 81
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.86 E-value=1.6e-21 Score=205.96 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=126.0
Q ss_pred CEEEEE----eCCCCcHHHHHHHHHHCCC--EEEEEeCCCChhccc------cCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 6 ELVLIL----DYGSQYTHLITRRIRSLSI--LSLCLSGTCSLDDIT------AKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 6 ~~I~Il----D~G~~~~~~i~r~l~~~G~--~~~v~~~~~~~~~~~------~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
-+|+++ +..+.| .++.++|+.+|+ .+.+.+...+.+++. +.++|||+|||||++...+. ....
T Consensus 290 v~IalVGKY~~~~daY-~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g----~i~a 364 (525)
T TIGR00337 290 VTIGIVGKYVELKDSY-LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGVEG----KILA 364 (525)
T ss_pred cEEEEEeCCcCCHHHH-HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcC----hHHH
Confidence 468888 334556 588999999886 232333222222221 35689999999998644321 2356
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC------------------------------cccceeeeEEEecCCcc
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE------------------------------KQEYGRMEILVERSSGI 123 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~------------------------------~~e~G~~~v~~~~~~~l 123 (531)
++++.++++|+||||+|||+|+.++|++|.... ....|.+.+.+.+++.+
T Consensus 365 i~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L 444 (525)
T TIGR00337 365 IKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLA 444 (525)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChH
Confidence 788888999999999999999999988766521 01345667777777766
Q ss_pred ccCCCCCceEEEEeeccCcccc-----C-CCCcEEEEEeCC-CcEEEEEECCCcEE-EEecCCCCCCCc-ccchhhhhhe
Q 039743 124 FGNKKVGHHQVVWMSHGDEAVV-----L-PDGFEVVARSQQ-GAVAAVENREKRLF-GLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 124 ~~~~~~~~~~~v~~~H~~~v~~-----l-p~g~~vla~s~~-~~v~ai~~~~~~i~-gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
.+-++.. .....+.|++.|.. + .+|+++.|.++| +.++|++.++.+++ |+|||||....+ ....+|+.|+
T Consensus 445 ~~iyG~~-~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV 523 (525)
T TIGR00337 445 FKLYGKE-EVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFV 523 (525)
T ss_pred HHHhCCC-ceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHH
Confidence 6555443 12333444444421 1 379999999988 58999999888865 999999987544 4578999997
No 82
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.86 E-value=8.7e-21 Score=183.47 Aligned_cols=184 Identities=20% Similarity=0.289 Sum_probs=135.5
Q ss_pred EEEEEeCCCCcH-HHHHHHHH-HCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CC---CCChHHHHHHHHh
Q 039743 7 LVLILDYGSQYT-HLITRRIR-SLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DA---PAFPAGFLEWALS 79 (531)
Q Consensus 7 ~I~IlD~G~~~~-~~i~r~l~-~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~---~~~~~~l~~~~~~ 79 (531)
+|+||+|+++++ ..+.++++ .+|+++..++.+.. + ..++|+||||||++..... .. .....+.++.+.+
T Consensus 2 ~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~--~--l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~ 77 (219)
T PRK03619 2 KVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKET--D--LDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAE 77 (219)
T ss_pred EEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcC--C--CCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHH
Confidence 699999998885 55899999 89999888865431 2 3578999999997631100 00 0112345556677
Q ss_pred CCCcEEEeeHHHHHHHHH--cCCEEeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeeccCcc--------ccC
Q 039743 80 NGVYVLGICYGLQLMVQK--LDGVVKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSHGDEA--------VVL 146 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~--~GG~v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v--------~~l 146 (531)
+++|++|||.|+|+|+++ ++|++.++...+| +|..+++.+ ++++++++.....+.++..|++.. ..+
T Consensus 78 ~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l 157 (219)
T PRK03619 78 KGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRL 157 (219)
T ss_pred CCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHH
Confidence 899999999999999997 9999999888888 566666654 468888885543466777898763 445
Q ss_pred C-CCcEEEEEe---CCC---cEEEEEECCCcEEEEecCCCCCCC-----cccchhhhhhe
Q 039743 147 P-DGFEVVARS---QQG---AVAAVENREKRLFGLQYHPEVTHS-----PEGMETLRYFL 194 (531)
Q Consensus 147 p-~g~~vla~s---~~~---~v~ai~~~~~~i~gvQFHPE~~~~-----~~g~~i~~~F~ 194 (531)
. .++.++..+ +++ .|+++.++.++++|+|||||+... ..|..||++|+
T Consensus 158 ~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v 217 (219)
T PRK03619 158 EGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLL 217 (219)
T ss_pred HhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHh
Confidence 3 355544444 555 578888777899999999999843 58999999997
No 83
>PRK06186 hypothetical protein; Validated
Probab=99.86 E-value=2.9e-21 Score=184.88 Aligned_cols=184 Identities=16% Similarity=0.062 Sum_probs=123.3
Q ss_pred EEEEE----eCCCCcHHHHHHHHHH----CCCEEEEEeCCCC-hhc-cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 7 LVLIL----DYGSQYTHLITRRIRS----LSILSLCLSGTCS-LDD-ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~~----~G~~~~v~~~~~~-~~~-~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
+|+++ ++.+.|. ++..+|+. .+..+.+.+.+.. +++ -.+.++|||+++||.+..--+ -....+++
T Consensus 3 ~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~----Gki~ai~~ 77 (229)
T PRK06186 3 RIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDD----GALTAIRF 77 (229)
T ss_pred EEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHh----HHHHHHHH
Confidence 57777 3334443 45566665 4566666665432 211 125688999999998742211 13467899
Q ss_pred HHhCCCcEEEeeHHHHHHHHHcCCEEeec---Ccccc------------------eeeeEEEecCCccccCCCCCceE--
Q 039743 77 ALSNGVYVLGICYGLQLMVQKLDGVVKVG---EKQEY------------------GRMEILVERSSGIFGNKKVGHHQ-- 133 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~Qlla~~~GG~v~~~---~~~e~------------------G~~~v~~~~~~~l~~~~~~~~~~-- 133 (531)
|+++++|+||||+|||++...+...+... ...|+ ..+.+.+.+++.+.+-+... .+
T Consensus 78 Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iyg~~-~i~e 156 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLRPGSLIARAYGTL-EIEE 156 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEECCCCHHHHHhCCC-eeee
Confidence 99999999999999998777665554321 00011 12567777777665555433 12
Q ss_pred ------EEEeeccCccccCCCCcEEEEEeCCCcEEEEEECCCc-EEEEecCCCCCCCc-ccchhhhhheecccc
Q 039743 134 ------VVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKR-LFGLQYHPEVTHSP-EGMETLRYFLFDVCG 199 (531)
Q Consensus 134 ------~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~-i~gvQFHPE~~~~~-~g~~i~~~F~~~~~~ 199 (531)
.|+..|.+.+. .+|+++.|.++|+.++|++.++.+ ++|+|||||+...+ ....+|+.|+ +.|.
T Consensus 157 rhrHryeVNs~h~q~i~--~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv-~aa~ 227 (229)
T PRK06186 157 GYHCRYGVNPEFVAALE--SGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFL-RAAR 227 (229)
T ss_pred eccccEEECHHHHHHHh--cCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHH-HHHh
Confidence 35555666654 889999999999999999988776 67999999986533 4568999998 5553
No 84
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.85 E-value=3.9e-21 Score=190.06 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=144.3
Q ss_pred hhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC-ChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 211 DEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL-RYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 211 ~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~-~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
++..+.|++.+.. .++|+||+|||+||+++|+++.++.+.++++++++++.. +..+.+.+.+ +|+.+|++++++++
T Consensus 7 ~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~-~a~~lgi~~~~i~i 85 (250)
T TIGR00552 7 EEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALA-LAEPLGINYKNIDI 85 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHH-HHHHhCCeEEEEcc
Confidence 3344445554432 468999999999999999999998777899999998864 4556667665 89999999999999
Q ss_pred chHHHHh---hcCC-CCcc--cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc
Q 039743 288 TDQFLSK---LKGV-IDPE--TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361 (531)
Q Consensus 288 ~~~f~~~---l~~~-~~p~--~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik 361 (531)
++.+... .... .+.. .++.+|++.++..+...|++.| +.+|++||+..+.. |. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g------~~~laTgh~~E~~~------G~--------~ 145 (250)
T TIGR00552 86 APIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHN------LLVLGTGNKSELML------GY--------F 145 (250)
T ss_pred hHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcC------CEEEcCCcHHHHhh------CC--------e
Confidence 8766421 1111 1111 2345666667778899999888 79999999765432 32 2
Q ss_pred cccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 362 t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
|.++.++ ..++||.+++|+||+++|+.+|+|..++.+.|+ +|| ++|+.+++.++-.+...|.++..
T Consensus 146 t~~gd~~-------~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~ps--a~L---~~~q~de~~~g~~y~~~D~~l~~ 211 (250)
T TIGR00552 146 TKYGDGG-------CDIAPIGDLFKTQVYELAKRLNVPERIIEKPPT--ADL---FDGQTDETELGITYDELDDYLKG 211 (250)
T ss_pred ecccCCc-------cCccccCCCcHHHHHHHHHHHCccHHHhCCCCC--cCC---CCCCcCHHHhCcCHHHHHHHHHH
Confidence 3333322 378999999999999999999999877666554 445 57999999998889999999743
No 85
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.85 E-value=4.4e-21 Score=188.33 Aligned_cols=207 Identities=24% Similarity=0.204 Sum_probs=151.2
Q ss_pred cccccccccchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHHhC-Cc---------EEEEEEeCCCCChhH
Q 039743 199 GVNAGWKLENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKAIG-DR---------LHCVFVDNGLLRYKE 266 (531)
Q Consensus 199 ~~~~~w~~~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~~g-~~---------v~~v~id~g~~~~~e 266 (531)
+..++.+++..++..+.+|++++.+. +++++++|||+||+|+|+|+.++++ .+ ++++.++... ...
T Consensus 11 ~~~~~~~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~--~~~ 88 (268)
T PRK00768 11 GVKPTIDPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGV--QAD 88 (268)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCC--cCC
Confidence 55667777888888889999987543 6899999999999999999999986 44 7888887532 333
Q ss_pred HHHHHHHHHHhCCC-cEEEEECchHHHHhhcCCCC--cccccchhhHHHHH----HHHHHHHHhhhhcCCCCcEEEeccc
Q 039743 267 RERVMDTFEKDLHL-PVTCVDATDQFLSKLKGVID--PETKRKIIGKEFIC----IFDAFAHDLEQKLGKKPAYLVQGTL 339 (531)
Q Consensus 267 ~~~~~~~la~~lgi-~~~vvd~~~~f~~~l~~~~~--p~~kr~~~~~~~~~----~~~~~a~~~g~~~~~~~~~l~~Gt~ 339 (531)
.+.+.. +|+.+|+ ++.++++++.+..-+..+.. .+......+|...| +++.+|. ....++.||.
T Consensus 89 ~~da~~-la~~lgi~~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An--------~~~~lvlgT~ 159 (268)
T PRK00768 89 EDDAQD-ALAFIQPDRVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAG--------ATGGLVVGTD 159 (268)
T ss_pred HHHHHH-HHHhcCCCeeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHc--------cCCCEEEcCC
Confidence 455554 8999999 79999998654333221111 11112233444433 4444443 3456888885
Q ss_pred CCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccC
Q 039743 340 YPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLG 419 (531)
Q Consensus 340 ~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g 419 (531)
.-+ | ...|+ .|+|++++. .+.|+.+++|.|||++|+++|+|+.++.+ | |.+||..|.+|
T Consensus 160 N~s--E--~~~Gy--------~TkyGD~~~-------d~~pi~~L~KteV~~La~~l~vP~~ii~k-~-Psa~L~~~~~g 218 (268)
T PRK00768 160 HAA--E--AVTGF--------FTKFGDGGA-------DILPLFGLNKRQGRALLAALGAPEHLYEK-V-PTADLEDDRPG 218 (268)
T ss_pred ccc--H--HHhCc--------eeccCCccc-------cchhhcCCcHHHHHHHHHHhCCCHHHhcC-C-CCCCcCCCCCC
Confidence 443 3 22455 788998877 89999999999999999999999876544 5 67889999999
Q ss_pred CCCcchHHHHHhhhhHHH
Q 039743 420 DVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 420 ~vt~~~l~~~~~~~d~~~ 437 (531)
+.+++.++..++..|.++
T Consensus 219 q~DE~~lg~~Y~~lD~~L 236 (268)
T PRK00768 219 LPDEVALGVTYDQIDDYL 236 (268)
T ss_pred CCChhhcCCCHHHHHHHH
Confidence 999999966799999985
No 86
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.84 E-value=3.2e-21 Score=175.37 Aligned_cols=164 Identities=23% Similarity=0.287 Sum_probs=126.4
Q ss_pred CCcHHHHHHHHHHCCCEEEEEeCC-CCh-hccccCCCCEEEEcCCCCCCCCCCCCCChH--HHHHHHHhCCCcEEEeeHH
Q 039743 15 SQYTHLITRRIRSLSILSLCLSGT-CSL-DDITAKNPRVVILSGGPHSVHSPDAPAFPA--GFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 15 ~~~~~~i~r~l~~~G~~~~v~~~~-~~~-~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~--~l~~~~~~~~iPvLGIC~G 90 (531)
++|.......+.+-|........- -.. ++-.+.+|+|++|||+..+.+++ .+|+.+ .+++......+||||||+|
T Consensus 24 Ggy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d-~dWI~KLcs~~kkld~mkkkvlGICFG 102 (245)
T KOG3179|consen 24 GGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSD-ADWIKKLCSFVKKLDFMKKKVLGICFG 102 (245)
T ss_pred cCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCccccccc-chHHHHHHHHHHHHHhhccceEEEecc
Confidence 356677788888888776655421 111 11114679999999999988874 577653 4455555567999999999
Q ss_pred HHHHHHHcCCEEeecCcc-cceeeeEEEecC----CccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 91 LQLMVQKLDGVVKVGEKQ-EYGRMEILVERS----SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 91 ~Qlla~~~GG~v~~~~~~-e~G~~~v~~~~~----~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
||++|++.||+|.+++++ +.+...+++.+. ...|..++.. +.+...|.|.|.++|++++++|+|+.|.++.+.
T Consensus 103 HQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~--l~IikcHqDevle~PE~a~llasSe~ceve~fs 180 (245)
T KOG3179|consen 103 HQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKS--LNIIKCHQDEVLELPEGAELLASSEKCEVEMFS 180 (245)
T ss_pred HHHHHHhhCCccccCCCCCcccccceEEEEecccchhhcccchhh--hhHHhhcccceecCCchhhhhccccccceEEEE
Confidence 999999999999998654 555555555422 2567767777 888899999999999999999999999999998
Q ss_pred ECCCcEEEEecCCCCCC
Q 039743 166 NREKRLFGLQYHPEVTH 182 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~ 182 (531)
. +++++++|.|||++.
T Consensus 181 ~-~~~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 181 I-EDHLLCFQGHPEYNK 196 (245)
T ss_pred e-cceEEEecCCchhhH
Confidence 4 678999999999875
No 87
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.84 E-value=1e-20 Score=199.73 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=126.6
Q ss_pred EEEEE-eC---CCCcHHHHHHHHHHCC----CEEEEEeCCCCh-hc----cccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL-DY---GSQYTHLITRRIRSLS----ILSLCLSGTCSL-DD----ITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il-D~---G~~~~~~i~r~l~~~G----~~~~v~~~~~~~-~~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ +| -+.| .++.++|+.+| ..+.+.+.+... ++ -.+.++||||||||++....+ -...+
T Consensus 290 ~IalVGKY~~l~DaY-~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~~~----g~i~~ 364 (533)
T PRK05380 290 TIALVGKYVELPDAY-KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIE----GKILA 364 (533)
T ss_pred EEEEEeCccCCcHHH-HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccccc----cHHHH
Confidence 58888 33 2334 46777777665 455665554321 11 115679999999998753222 23467
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHHcCCEEee--cC-c---------------------------ccceeeeEEEecCCcc
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQKLDGVVKV--GE-K---------------------------QEYGRMEILVERSSGI 123 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~--~~-~---------------------------~e~G~~~v~~~~~~~l 123 (531)
++.+.++++|+||||+|||+|+.++||+|.. .. . ...|.+.+.+.+++.+
T Consensus 365 i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~l 444 (533)
T PRK05380 365 IRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLA 444 (533)
T ss_pred HHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCCChH
Confidence 7888889999999999999999999999831 10 0 1234566777667666
Q ss_pred ccCCCCCc-------eEEEEeeccCccccCCCCcEEEEEeCC-CcEEEEEECCCcEE-EEecCCCCCCCc-ccchhhhhh
Q 039743 124 FGNKKVGH-------HQVVWMSHGDEAVVLPDGFEVVARSQQ-GAVAAVENREKRLF-GLQYHPEVTHSP-EGMETLRYF 193 (531)
Q Consensus 124 ~~~~~~~~-------~~~v~~~H~~~v~~lp~g~~vla~s~~-~~v~ai~~~~~~i~-gvQFHPE~~~~~-~g~~i~~~F 193 (531)
.+-++... .+.|+..|.+.+.+ .|+++.|.+++ +.++|++.+++++| |+|||||+...+ .+..+|++|
T Consensus 445 ~~iyg~~~i~ErhrHryeVNs~h~qal~~--~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~F 522 (533)
T PRK05380 445 AEIYGKEEIYERHRHRYEVNNKYREQLEK--AGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGF 522 (533)
T ss_pred HHHhCCCceeeecccceecCHHHHHHHhh--cCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHH
Confidence 55554331 12345555555544 49999999966 59999999888865 999999997654 578999999
Q ss_pred eecccc
Q 039743 194 LFDVCG 199 (531)
Q Consensus 194 ~~~~~~ 199 (531)
+ ++|.
T Consensus 523 V-~Aa~ 527 (533)
T PRK05380 523 V-KAAL 527 (533)
T ss_pred H-HHHH
Confidence 8 6663
No 88
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.84 E-value=3.4e-20 Score=185.07 Aligned_cols=185 Identities=21% Similarity=0.221 Sum_probs=137.5
Q ss_pred CEEEEEeCCCC---cHHHHHHHHHHCCCEEEE--EeCC----------------CChhccccCCCCEEEEcCCCCC--CC
Q 039743 6 ELVLILDYGSQ---YTHLITRRIRSLSILSLC--LSGT----------------CSLDDITAKNPRVVILSGGPHS--VH 62 (531)
Q Consensus 6 ~~I~IlD~G~~---~~~~i~r~l~~~G~~~~v--~~~~----------------~~~~~~~~~~~dgiIlsGGp~s--~~ 62 (531)
-+|+||+.=.. ....+.|.|......+++ +... .++++++..++||+|++|+|.. ++
T Consensus 36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f 115 (302)
T PRK05368 36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF 115 (302)
T ss_pred ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence 37999976322 233456666554444443 2211 1234455678999999999987 67
Q ss_pred CCCCCCC-hHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEee-cCcccceeeeEEEe-cCCccccCCCCCceEEEEeec
Q 039743 63 SPDAPAF-PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV-GEKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 63 ~~~~~~~-~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~-~~~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H 139 (531)
++...|- ..++++++.++.+|+||||+|+|+++.++||.... .+..++|....++. ..++|++++++. +.+.++|
T Consensus 116 edv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~d~--F~~phSr 193 (302)
T PRK05368 116 EDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDPHHPLLRGFDDS--FLVPHSR 193 (302)
T ss_pred CCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCCCChhhcCCCCc--cccceee
Confidence 6654342 35788999999999999999999999999996332 34468898776664 456899999988 9999999
Q ss_pred cCcc----ccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhh
Q 039743 140 GDEA----VVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRY 192 (531)
Q Consensus 140 ~~~v----~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~ 192 (531)
.+.| ..+|+|++++|.|+.+.++++...+++++++|+|||++....-.++.|.
T Consensus 194 ~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r~~~vQgHPEYd~~tL~~EY~RD 250 (302)
T PRK05368 194 YTEVREEDIRAATGLEILAESEEAGVYLFASKDKREVFVTGHPEYDADTLAQEYFRD 250 (302)
T ss_pred hhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 8888 3578999999999999999999877789999999999875444444444
No 89
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.84 E-value=3.3e-21 Score=197.02 Aligned_cols=170 Identities=27% Similarity=0.395 Sum_probs=110.0
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCCh---------hHHHHHHHHHHHhCCCcEEEEECchHHHHhh
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY---------KERERVMDTFEKDLHLPVTCVDATDQFLSKL 295 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~---------~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l 295 (531)
+||+||+||||||+|+|+||+++ |.+|+++|+.++.... ++.++|++ +|++||||++++|+.+.|.+.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~-G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~-va~~LgIp~~v~d~~~~f~~~V 78 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ-GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARR-VAEKLGIPHYVVDLREEFWEEV 78 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC-T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHH-HHHHHT--EEEEETHHHHHHHT
T ss_pred CeEEEEccCCHHHHHHHHHHHhh-cccceEEEEEEeccccccCCCCCchhhHHHHHH-HHHhcCCCEEEEChHHHHHHHH
Confidence 47999999999999999999998 9999999998876532 34566665 9999999999999999887663
Q ss_pred ---------cCCC-CcccccchhhHHHHH--HHHHHHHH-hhhhcCCCCcEEEecccCCCccccC--C---CCCCCCCcc
Q 039743 296 ---------KGVI-DPETKRKIIGKEFIC--IFDAFAHD-LEQKLGKKPAYLVQGTLYPDVIESC--P---PPGTGRTHS 357 (531)
Q Consensus 296 ---------~~~~-~p~~kr~~~~~~~~~--~~~~~a~~-~g~~~~~~~~~l~~Gt~~~D~~es~--~---~~g~g~~~~ 357 (531)
+|.+ || |+.||.+++ .|.+.|.+ +| ++++|||| |..+.... . ..+. .
T Consensus 79 i~~f~~~Y~~G~TPNP----cv~CN~~IKF~~l~~~a~~~~g------~d~iATGH-YAri~~~~~~~~~~L~r~----~ 143 (356)
T PF03054_consen 79 IEPFLDEYRKGRTPNP----CVLCNRFIKFGALLEYADEGLG------ADYIATGH-YARIEKDEKNGRYRLLRG----A 143 (356)
T ss_dssp HHHHHHHHHTT----H----HHHHHHHTTTTHHHHHHHTTTT-------SEEE----SEEEEEES-TTEEEEEE-----S
T ss_pred HHHHHHHHhcCCCCCh----HHhhchhhhHHHHHHHHHhhcC------CCeeccce-eEEEEeeccCCceEEEec----C
Confidence 4543 55 488898765 77788887 77 89999998 66665431 0 0111 2
Q ss_pred cccccc-cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCc
Q 039743 358 HTIKSH-HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGL 413 (531)
Q Consensus 358 ~~ikt~-~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~l 413 (531)
+..|.+ |.+..++...--+++-||.+++|+|||++|+++|||. ..+..+.+-|+
T Consensus 144 D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~--a~k~eSq~iCF 198 (356)
T PF03054_consen 144 DPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPV--AEKKESQGICF 198 (356)
T ss_dssp STTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TT--TT-----SSTT
T ss_pred CCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcc--cCccccceEEE
Confidence 333333 5677787766678999999999999999999999993 34445556565
No 90
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.83 E-value=2.1e-20 Score=193.28 Aligned_cols=185 Identities=22% Similarity=0.269 Sum_probs=133.7
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCC-------CcEEEEECch--HH
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLH-------LPVTCVDATD--QF 291 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lg-------i~~~vvd~~~--~f 291 (531)
++..+++++++|||+||+|+++++++. |.+|.++|+++| ....+.+.+ +|+.|+ +++++++... .+
T Consensus 177 vGs~gkvlvllSGGiDSpVAa~ll~kr-G~~V~~v~f~~g---~~~~e~v~~-la~~L~~~~~~~~i~l~~v~~~~~~~v 251 (381)
T PRK08384 177 IGTQGKVVALLSGGIDSPVAAFLMMKR-GVEVIPVHIYMG---EKTLEKVRK-IWNQLKKYHYGGKAELIVVKPQERERI 251 (381)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHc-CCeEEEEEEEeC---HHHHHHHHH-HHHHhcccccCCcceEEEEChHHHHHH
Confidence 466789999999999999999999998 999999999988 345556655 888887 5577777642 13
Q ss_pred HHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 292 LSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 292 ~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
...+.....+...|.+|++.+++++.++|++.| +++|++||+.+|+.+ +|..|+..+..
T Consensus 252 ~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g------~~~IaTGhslgqvaS---------------Qtl~Nl~~i~~ 310 (381)
T PRK08384 252 IQKLKELKKENYTCVFCKFMMVKHADRIAKEFG------AKGIVMGDSLGQVAS---------------QTLENMYIVSQ 310 (381)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHcC------CCEEEEcccchhHHH---------------HHHHHHHHHhc
Confidence 333322222333444444447789999999988 899999999998764 23334333444
Q ss_pred ccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHH
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEI 436 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~ 436 (531)
...+.+++||..++|+||+++|+++|..+ +...|..++|++.+ ..+|..++ +.+++.++.
T Consensus 311 ~~~lpilRPLi~~dK~EIi~~Ar~iGT~~--~s~~~~~dc~f~pk--~P~t~~~~-~~~~~~e~~ 370 (381)
T PRK08384 311 ASDLPIYRPLIGMDKEEIVAIAKTIGTFE--LSTLPEDEIPFIPK--HPVIRGSW-EEFRKLYKA 370 (381)
T ss_pred cCCCcEEeeCCCCCHHHHHHHHHHcCCcc--cccCCCCceEEeCC--CCcCCCCH-HHHHHHHHH
Confidence 44567999999999999999999999543 34567767666532 55777777 666666654
No 91
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.82 E-value=7.2e-20 Score=188.72 Aligned_cols=171 Identities=23% Similarity=0.264 Sum_probs=124.2
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC----------ChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL----------RYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~----------~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
++|+||+|||+||+++|+++++. |.++.++|++++.. +..+.+.+.+ +|+++||+++++|+++.|...
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~-G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~-~a~~LgIp~~vvd~~~~f~~~ 78 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ-GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARR-VADKLGIPHYVVDFEKEFWDR 78 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc-CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHH-HHHHcCCcEEEEeCHHHHHHH
Confidence 37999999999999999999986 99999999998753 2345566655 899999999999998766433
Q ss_pred h---------cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc-c
Q 039743 295 L---------KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK-S 362 (531)
Q Consensus 295 l---------~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik-t 362 (531)
+ .+.+ | ..|+.|+.. +..+.+.|+++| +++|++||+.+|..++....+. +.-+ .
T Consensus 79 vi~~~~~~~~~g~t-p--npc~~C~r~ik~~~l~~~A~~~g------~~~IATGH~a~d~~~~~L~rg~-----d~~kDq 144 (346)
T PRK00143 79 VIDYFLDEYKAGRT-P--NPCVLCNKEIKFKAFLEYARELG------ADYIATGHYARIRDGRELLRGV-----DPNKDQ 144 (346)
T ss_pred HHHHHHHHHHcCCC-C--CcChhhhHHHHHHHHHHHHHHCC------CCEEEeeeeccccccceEEEcc-----CCCcCh
Confidence 1 2221 2 124555653 568889999888 8999999999998764111222 1111 1
Q ss_pred ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCC-CCcc
Q 039743 363 HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPG-PGLA 414 (531)
Q Consensus 363 ~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~-p~la 414 (531)
-+.+.+++.....++++||.+++|+|||++|+++|||. +..|.+. .|++
T Consensus 145 sy~l~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~---~~k~~s~~icf~ 194 (346)
T PRK00143 145 SYFLYQLTQEQLAKLLFPLGELTKPEVREIAEEAGLPV---AKKKDSQGICFI 194 (346)
T ss_pred hhhhccCCHHHhcceeccCccCCHHHHHHHHHHcCCCc---CCCCCCCcccCC
Confidence 13344555433447999999999999999999999995 6667663 6664
No 92
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.82 E-value=8.1e-20 Score=196.38 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=150.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
+.+|+.+|+|..|. +.|+|...|+++.++|++.+.++ .+||||+|++||+++.- .+.+...+ +..++.++||
T Consensus 172 ~~~I~aiDcG~K~N--~IRcL~~RGa~vtVvPw~~~i~~---~~yDGlflSNGPGdPe~--~~~~v~~v-r~lL~~~~Pv 243 (1435)
T KOG0370|consen 172 SLRILAIDCGLKYN--QIRCLVKRGAEVTVVPWDYPIAK---EEYDGLFLSNGPGDPEL--CPLLVQNV-RELLESNVPV 243 (1435)
T ss_pred ccEEEEcccCchHH--HHHHHHHhCceEEEecCCccccc---cccceEEEeCCCCCchh--hHHHHHHH-HHHHhCCCCe
Confidence 46899999998775 78999999999999999987754 38999999999995321 12222222 3344457999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAV 161 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v 161 (531)
+|||+|||+|+.+.|++..+...+.-|. ++ |... .....++..-++|++.|. .||.|++.+-.+ +|+..
T Consensus 244 fGIClGHQllA~AaGakT~KmKyGNRGh---Ni----P~~~-~~tGrc~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSN 315 (1435)
T KOG0370|consen 244 FGICLGHQLLALAAGAKTYKMKYGNRGH---NI----PCTC-RATGRCFITSQNHGYAVDPATLPAGWKPLFVNANDGSN 315 (1435)
T ss_pred EEEehhhHHHHHhhCCceEEeeccccCC---Cc----ccee-ccCceEEEEecCCceeeccccccCCCchheeecccCCC
Confidence 9999999999999999998875433332 22 1111 112224777789999984 689999999888 77899
Q ss_pred EEEEECCCcEEEEecCCCCCCCccc-chhhhhheeccccccccccccchhhhhh-hhhhccccCccceeeccCCCC
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEG-METLRYFLFDVCGVNAGWKLENVLDEEV-KCIKDTVGLEDHVICALSGGV 235 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g-~~i~~~F~~~~~~~~~~w~~~~~~~~~~-~~i~~~v~~~~kvvvalSGGv 235 (531)
+++.|...|++.+|||||.+..+.. .-+|+.|+....+....-+...+..... ...+. ..+++++.=|||.
T Consensus 316 EGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~~---~~~kVlvlGSGGL 388 (1435)
T KOG0370|consen 316 EGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITEPAKAAPRV---EVKKVLVLGSGGL 388 (1435)
T ss_pred ceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCcccccccccccccccc---cccEEEEEccCCc
Confidence 9999999999999999999987754 5678888844444333333333332111 11121 1457888888885
No 93
>PRK08349 hypothetical protein; Validated
Probab=99.82 E-value=1.5e-19 Score=172.68 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=115.9
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcE---EEEECchHHHH---hhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPV---TCVDATDQFLS---KLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~---~vvd~~~~f~~---~l~~~~ 299 (531)
++++++|||+||+|+++++++. |.+|+++|+|++....+..+++.+.+++.+|+++ .++|..+.... .+....
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~-g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 80 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR-GVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRELK 80 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc-CCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhhC
Confidence 6899999999999999999886 9999999999853211222233333455556876 55665433221 111111
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
+....|..|+..|+.++.++|+++| ++.|++||+.+|..++ +..|+........+.+++
T Consensus 81 ~~~~~c~~cr~~~~~~a~~~A~~~g------~~~I~tG~~~~d~a~~---------------~l~nl~~~~~~~~i~i~r 139 (198)
T PRK08349 81 KEKWTCIFCKYTMYRKAERIAHEIG------ASAIITGDSLGQVASQ---------------TLDNLMVISTATDLPVLR 139 (198)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHcC------CCEEEEecCCchHHHH---------------HHHHHhccccccCCeEEc
Confidence 1222333455557778888998888 8999999999997652 112222222223467999
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCCCCCcccccc-CCCCcchHHHHHhhh
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL-GDVTEGNSLDILRQV 433 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~-g~vt~~~l~~~~~~~ 433 (531)
||.+++|+||+++|+++|+++ .+..| +.+|... + -..|.... ..+++.
T Consensus 140 PL~~~~K~eI~~~a~~~g~~~--~~~~~-~~~C~~~--~~~~~~~~~~-~~~~~~ 188 (198)
T PRK08349 140 PLIGLDKEEIVKIAKEIGTFE--ISIEP-EPPCPFV--PKYPVVRASL-GEFEKI 188 (198)
T ss_pred CCCCCCHHHHHHHHHHcCChh--hhhCC-CCCCcCC--CCCCcCCCCH-HHHHHH
Confidence 999999999999999999764 35556 4456521 2 22455555 444443
No 94
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.82 E-value=1.4e-19 Score=170.59 Aligned_cols=159 Identities=20% Similarity=0.241 Sum_probs=114.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHh-----CCcEEEEEEeCCCCC--hhHHHHHHHHHHHhCCCcEEEEECchHHHH-hhcC
Q 039743 226 HVICALSGGVDSTVAATLVHKAI-----GDRLHCVFVDNGLLR--YKERERVMDTFEKDLHLPVTCVDATDQFLS-KLKG 297 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~-----g~~v~~v~id~g~~~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~-~l~~ 297 (531)
+|+|++|||+||+++++++++.. +.+++++|+|+|... ..+.+.+.+ +|+.+|++++++++++.|.. ....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVER-LAEELGIELEIVSFKEEYTDDIEVK 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHH-HHHHcCCceEEEehhhhcchhhhhh
Confidence 58999999999999999998864 348999999999864 345555554 89999999999999865400 0111
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCC----
Q 039743 298 VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLP---- 370 (531)
Q Consensus 298 ~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~---- 370 (531)
..+....|..|.+.++..+.+.|++.| ++.|++||+.+|++|+.. +.|.| +. +..++.
T Consensus 80 ~~~~~~~~~~c~~~r~~~l~~~a~~~g------~~~l~~Gh~~dD~~et~l~~~~~g~~------~~---~~~~~~~~~~ 144 (185)
T cd01993 80 KRGGKSPCSLCGVLRRGLLNKIAKELG------ADKLATGHNLDDEAETLLMNLLRGGI------LR---LMRPGPILYL 144 (185)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHcC------CCEEEEcCChHHHHHHHHHHHHhcCH------HH---HcCCCCcccc
Confidence 112223344555566778888898887 899999999999998631 11110 01 111121
Q ss_pred cccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 371 KDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 371 ~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
......+++||.+++|+||+++++++|||.
T Consensus 145 ~~~~~~iirPL~~~~k~eI~~~~~~~~l~~ 174 (185)
T cd01993 145 DEGDVTRIRPLVYVREKEIVLYAELNGLPF 174 (185)
T ss_pred CCCCceEEeecccCCHHHHHHHHHHcCCCc
Confidence 223467999999999999999999999995
No 95
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.81 E-value=1.1e-19 Score=172.14 Aligned_cols=161 Identities=24% Similarity=0.273 Sum_probs=118.0
Q ss_pred ceeeccCCCCCHHHHHHHHHHH---hCCcEEEEEEeCCCCC--hhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDNGLLR--YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~---~g~~v~~v~id~g~~~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
+|+||+|||+||+++++++.++ .|.++.++|+|+|+.. ..+.+.+.+ +|+.+|+++++++++........ ..+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~-~~~~~gi~~~~~~~~~~~~~~~~-~~~ 78 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQ-FCKKLNIPLEIKKVDVKALAKGK-KKN 78 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHH-HHHHcCCCEEEEEecchhhcccc-CCC
Confidence 5899999999999999999875 3678999999999974 335566655 89999999999998643211111 122
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCccc----
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPKDM---- 373 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~~~---- 373 (531)
++ ..+.+.++..+.++|++.| +++|++||+.+|++|+.. +.|. ...++.++++..
T Consensus 79 ~~---~~~r~~R~~~l~~~a~~~g------~~~i~~Gh~~~D~~e~~l~~~~~g~---------~~~~l~~~~~~~~~~~ 140 (189)
T TIGR02432 79 LE---EAAREARYDFFEEIAKKHG------ADYILTAHHADDQAETILLRLLRGS---------GLRGLSGMKPIRILGN 140 (189)
T ss_pred HH---HHHHHHHHHHHHHHHHHcC------CCEEEEcCccHHHHHHHHHHHHcCC---------CcccccCCccccccCC
Confidence 22 2344567778888998887 899999999999998621 1121 112344454322
Q ss_pred ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
...+++||.+++|+||+++++++|+|. +..|++
T Consensus 141 ~~~iirPL~~~~k~ei~~~~~~~~lp~---~~~~~~ 173 (189)
T TIGR02432 141 GGQIIRPLLGISKSEIEEYLKENGLPW---FEDETN 173 (189)
T ss_pred CCEEECCCCCCCHHHHHHHHHHcCCCe---eeCCCC
Confidence 466999999999999999999999995 655644
No 96
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.81 E-value=2.3e-19 Score=168.33 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=109.4
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhH----HHHHHHHHHHhCCCcE--EEEECchHHHHhhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKE----RERVMDTFEKDLHLPV--TCVDATDQFLSKLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e----~~~~~~~la~~lgi~~--~vvd~~~~f~~~l~~~~ 299 (531)
+++|+||||+||+++++++++. |.+++++|+|+|+...++ ..++.+ ..+.+++++ .+++....+........
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~-g~~v~av~~d~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 78 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR-GIEVDALHFNSGPFTSEKAREKVEDLAR-KLARYSPGHKLVVIIFTFFVQKEIYGYG 78 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc-CCeEEEEEEeCCCCCchHHHHHHHHHHH-HHHHhCCCCceEEEeCcHHHHHHHHHhC
Confidence 5899999999999999999997 999999999999986653 344444 335566554 56666542222221223
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
++...|..|.+.++..+.+.|++.| ++++++||+.+|..++. ..|+........+++++
T Consensus 79 ~~~~~c~~Cr~~~~~~~~~~A~~~g------~~~I~~G~~~~D~~~~~---------------~~~l~~~~~~~~~~i~r 137 (177)
T cd01712 79 KEKYRCILCKRMMYRIAEKLAEELG------ADAIVTGESLGQVASQT---------------LENLLVISSGTDLPILR 137 (177)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHcC------CCEEEEccCcccchHHH---------------HHhhhhcccCCCCeEEC
Confidence 4555565666667778888898887 89999999999965421 11111111223578999
Q ss_pred ccccCCHHHHHHHHHHcCCCc
Q 039743 380 PLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~ 400 (531)
||.+++|+||+++|+++|+|.
T Consensus 138 Pl~~~~K~eI~~~a~~~gl~~ 158 (177)
T cd01712 138 PLIGFDKEEIIGIARRIGTYD 158 (177)
T ss_pred CCCCCCHHHHHHHHHHcCCcc
Confidence 999999999999999999996
No 97
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.81 E-value=1.2e-19 Score=183.69 Aligned_cols=197 Identities=22% Similarity=0.202 Sum_probs=140.1
Q ss_pred hhhhhhhhhhccccC---ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 209 VLDEEVKCIKDTVGL---EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 209 ~~~~~~~~i~~~v~~---~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
..+++.+.|++.+.. .++|++++|||+||+++|+++.+++| .++++++++++.....+.+.+.. +|+.+|+++++
T Consensus 15 ~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~-lA~~LGi~~~~ 93 (326)
T PRK00876 15 EAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGRE-VAEHLGVEYVV 93 (326)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHH-HHHHcCCCEEE
Confidence 344444555555432 35899999999999999999999988 68999999988766777777776 99999999999
Q ss_pred EECchHHHHh-------------hcC-------------C--CC-------------cc-cc----------cchhhHHH
Q 039743 285 VDATDQFLSK-------------LKG-------------V--ID-------------PE-TK----------RKIIGKEF 312 (531)
Q Consensus 285 vd~~~~f~~~-------------l~~-------------~--~~-------------p~-~k----------r~~~~~~~ 312 (531)
+++++.+... +.. . .+ .+ .+ ....+|..
T Consensus 94 i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~ 173 (326)
T PRK00876 94 EDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDGLNVFSLVVQDPDGEVTRKRLPANAYLQIVAATNFK 173 (326)
T ss_pred EECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccccccccccccccCccccccccccccchhhhHHHHHHHH
Confidence 9998742210 100 0 00 00 00 11122332
Q ss_pred HH----HHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHH
Q 039743 313 IC----IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDE 388 (531)
Q Consensus 313 ~~----~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~e 388 (531)
.| ++...|.. .++++.||.+-. | ...|+ .|+||+++. .+.||.+|+|.|
T Consensus 174 aR~Rm~~ly~~A~~--------~~~lVlgT~Nks--E--~~~Gy--------~TkyGD~~~-------d~~Pi~~L~Kt~ 226 (326)
T PRK00876 174 QRTRKMVEYYHADR--------LNYAVAGTPNRL--E--YDQGF--------FVKNGDGAA-------DLKPIAHLYKTQ 226 (326)
T ss_pred HHHHHHHHHHHHHh--------cCCEEEcCCchh--h--HhhCC--------eeeecCccc-------cchhccCCCHHH
Confidence 22 34444443 457888885432 2 23455 889999877 899999999999
Q ss_pred HHHHHHHcCCCccccccCCCCCCCccccc-cCCCCcch-HHHHHhhhhHHHH
Q 039743 389 VRQLGRILNVPEQFLKRHPFPGPGLAVRV-LGDVTEGN-SLDILRQVDEIFI 438 (531)
Q Consensus 389 Vr~la~~lglp~~~~~~~P~~~p~la~r~-~g~vt~~~-l~~~~~~~d~~~~ 438 (531)
|+++|+.+|+|++|+.+.|+++ -+ .++.+++. ++-.++..|.++.
T Consensus 227 V~~La~~l~vP~~Ii~k~PSa~-----L~~~~q~de~~~~g~~Y~~lD~~L~ 273 (326)
T PRK00876 227 VYALAEHLGVPEEIRRRPPTTD-----TYSLPQTQEEFYFALPYDRMDLCLY 273 (326)
T ss_pred HHHHHHHhCCCHHHhcCCCCcc-----cCCCCCChhhhhcCCCHHHHHHHHH
Confidence 9999999999999999988776 33 37888886 5568999999964
No 98
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.81 E-value=4.1e-20 Score=173.89 Aligned_cols=183 Identities=21% Similarity=0.262 Sum_probs=105.3
Q ss_pred CccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC----hhHHHHHHHHHHHhC---CCcEEEEECchHHHHhh
Q 039743 223 LEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR----YKERERVMDTFEKDL---HLPVTCVDATDQFLSKL 295 (531)
Q Consensus 223 ~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~----~~e~~~~~~~la~~l---gi~~~vvd~~~~f~~~l 295 (531)
..+|++++||||+||.|++++++|. |.+|+++|++++... .+..+++.+.+++.. .+++.++|+.+.+.+-.
T Consensus 2 t~gk~l~LlSGGiDSpVAa~lm~kr-G~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~ 80 (197)
T PF02568_consen 2 TQGKALALLSGGIDSPVAAWLMMKR-GCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEIL 80 (197)
T ss_dssp TT-EEEEE-SSCCHHHHHHHHHHCB-T-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHH
T ss_pred CCceEEEEecCCccHHHHHHHHHHC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHH
Confidence 4679999999999999999999998 999999999954432 233344444343322 36888899887654433
Q ss_pred cCCCCcccccchhh-HHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 296 KGVIDPETKRKIIG-KEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 296 ~~~~~p~~kr~~~~-~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
.+. ++..+|+.| +.|+++..++|++.| ++.|++|....++.. +|.+|+..+....+
T Consensus 81 ~~~--~~~~~ci~ckr~M~r~A~~ia~~~g------a~~IvTGEsLGQvaS---------------QTl~nL~~i~~~~~ 137 (197)
T PF02568_consen 81 RGV--KERNPCIDCKRFMYRIAEEIAEEEG------ADAIVTGESLGQVAS---------------QTLENLRVIESASD 137 (197)
T ss_dssp HHS---GGGHHHHHHHHHHHHHHHHHHHTT--------EEE----SSSTTS-----------------HHHHHHHGGG--
T ss_pred hcC--CccchhHHHHHHHHHHHHHHHHHCC------CCEEEeCchhHHHHh---------------hhHHHHhhhhcccC
Confidence 333 333345544 447889999999988 899999999988742 45566655555557
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhh
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVD 434 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d 434 (531)
..++|||..++|+||.++|++.|+.+ +...|. ++|-..- ..++|+.++ +.+++.+
T Consensus 138 ~pIlRPLig~dK~EIi~~Ar~Igtye--~S~~~~-~~C~~~~-k~p~t~~~~-~~~~~~e 192 (197)
T PF02568_consen 138 LPILRPLIGFDKEEIIEIARKIGTYE--ISIRPY-DCCSLFP-KHPVTKAKL-EEVEKEE 192 (197)
T ss_dssp S-EE-TTTT--HHHHHHHHHHTT-HH--HHTS-------------------H-HHHHHHH
T ss_pred CceeCCcCCCCHHHHHHHHHHhCchh--hhcCCC-CcceeeC-CCCCcCCCH-HHHHHHH
Confidence 78999999999999999999999976 566676 6665332 445666666 5555444
No 99
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.80 E-value=3.5e-19 Score=184.01 Aligned_cols=170 Identities=25% Similarity=0.320 Sum_probs=123.4
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC--------ChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL--------RYKERERVMDTFEKDLHLPVTCVDATDQFLSKL-- 295 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~--------~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l-- 295 (531)
+|+||+|||+||+++|+++++. |.+++++|++++.. +..+.+.+.+ +|+.+|++++++|+++.|...+
T Consensus 1 kVlValSGGvDSsvla~lL~~~-g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~-va~~lgI~~~vvd~~~~f~~~v~~ 78 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ-GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARR-VADQLGIPHYVVNFEKEYWEKVFE 78 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-CCcEEEEEEecccccccccCCCCHHHHHHHHH-HHHHhCCcEEEEECcHHHHHHHHH
Confidence 5899999999999999999886 99999999998753 3456666665 8999999999999987665332
Q ss_pred -------cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCcccc-CC--CCCCCCCcccccccc
Q 039743 296 -------KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIES-CP--PPGTGRTHSHTIKSH 363 (531)
Q Consensus 296 -------~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es-~~--~~g~g~~~~~~ikt~ 363 (531)
.+.+ |. .|+.|+.+ +..+.+.|+++| +++|++||+.+|..+. .. +.+. .+.-+..
T Consensus 79 ~~i~~~~~g~t-pn--pc~~C~r~ikf~~l~~~A~~~g------~~~IatGHya~d~~~~~~~~~l~rg----~d~~kdq 145 (349)
T cd01998 79 PFLEEYKKGRT-PN--PDILCNKEIKFGALLDYAKKLG------ADYIATGHYARIEEDNNGRYRLLRG----VDPNKDQ 145 (349)
T ss_pred HHHHHHHcCCC-CC--chHhhhhHHHHHHHHHHHHHcC------cCEEEECCcCCeeecCCCceEEeec----CCCCCCc
Confidence 2221 21 34666663 567788888888 8999999999987764 11 1111 1111211
Q ss_pred -cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCC-CCCCCc
Q 039743 364 -HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP-FPGPGL 413 (531)
Q Consensus 364 -~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P-~~~p~l 413 (531)
+.+.+++.....++++||.+++|+|||++|+++|||. +..| +.+-|+
T Consensus 146 sy~L~~~~~~~l~~ii~PL~~~~K~eVr~~A~~~gl~~---~~k~~s~~iCF 194 (349)
T cd01998 146 SYFLSQLSQEQLSRLIFPLGDLTKPEVREIAKELGLPV---AKKKDSQGICF 194 (349)
T ss_pred ceEeccCCHHHHhheeecCCCCCHHHHHHHHHHcCCCC---CCCCCCCceEE
Confidence 4456666544567999999999999999999999994 5544 445454
No 100
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.80 E-value=7.3e-20 Score=172.47 Aligned_cols=158 Identities=26% Similarity=0.337 Sum_probs=102.6
Q ss_pred ceeeccCCCCCHHHHHHHHHHHh---CCcEEEEEEeCCCCChh--HHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYK--ERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~---g~~v~~v~id~g~~~~~--e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|++||+|||+||+++++++.+.. +.++.++|+|+|+.... +.+.+. .+|+.+|+++++.+++.. .....+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~-~~~~~~~i~~~~~~~~~~----~~~~~~ 75 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVE-EICEQLGIPLYIVRIDED----RKKGSN 75 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHH-HHHHHTT-EEEEEE--CH----CCTTST
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHH-HHHHhcCCceEEEEeeee----ecccCC
Confidence 68999999999999999998863 46899999999998543 334444 489999999999998751 111122
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC---CCCCCCcccccccccccCCCCcc---cc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP---PGTGRTHSHTIKSHHNVGGLPKD---MK 374 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~---~g~g~~~~~~ikt~~~~~~l~~~---~~ 374 (531)
.+ ..+...+++.+.+.|++.| ++.|++|||.||++|+... .|.| + .++.+++.. ..
T Consensus 76 ~e---~~aR~~Ry~~l~~~a~~~g------~~~i~~GHh~dD~~ET~l~~l~rg~~------~---~~l~~~~~~~~~~~ 137 (182)
T PF01171_consen 76 IE---ECARELRYQFLREIAKEEG------CNKIALGHHLDDQAETFLMNLLRGSG------L---RGLAGMPPVSPFKG 137 (182)
T ss_dssp CH---HHHHHHHHHHHHHHHHTTT-------CEEE---BHHHHHHHHHHHHHHT--------C---CCCC-S-SEEEETT
T ss_pred HH---HHHHHHHHHHHHHhhhccc------ccceeecCcCCccHHHHHHHHHHhcc------c---hhhccccccccccC
Confidence 22 2333457788999999888 8999999999999997321 1211 0 123344432 25
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+.++|||..++|+|++++++..|+|. +..|++
T Consensus 138 ~~~iRPLl~~~k~ei~~~~~~~~i~~---~~D~tN 169 (182)
T PF01171_consen 138 IKLIRPLLYVSKDEIRAYAKENGIPY---VEDPTN 169 (182)
T ss_dssp CEEE-GGGCS-HHHHHHHHHHTT-SS---BS-CCG
T ss_pred cccCCcchhCCHHHHHHHHHHCCCcE---EECcCC
Confidence 78999999999999999999999995 444543
No 101
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.80 E-value=6.3e-19 Score=181.57 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=124.9
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC--hhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcC-
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR--YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKG- 297 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~- 297 (531)
+.++++|+||+|||+||+|+|+++++. |.+++++|++++... .++.+.+.+ +|++|||+++++|.++.|...+-.
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~-G~~V~~v~~~~~~~~~~~~d~~~a~~-va~~LgIp~~vvd~~~~f~~~v~~~ 79 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARA-LAERLGIGHITYDARKVFRKQIIDY 79 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHc-CCeEEEEEEecCCCCCChHHHHHHHH-HHHHhCCCEEEEecHHHHHHHHHhh
Confidence 345789999999999999999999986 999999999986542 334555655 999999999999998777554310
Q ss_pred ----C-CCcccccchhhHHHH--HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC---CCCCCCcccccccccccC
Q 039743 298 ----V-IDPETKRKIIGKEFI--CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP---PGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 298 ----~-~~p~~kr~~~~~~~~--~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~---~g~g~~~~~~ikt~~~~~ 367 (531)
. .......|+.|+.++ ..+.+.|+++| +++|++||+..+..+.... .+.. ...-+| +.+.
T Consensus 80 f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G------~~~IATGHya~~~~~~~~~~l~~g~D---~~kDQS-yfL~ 149 (360)
T PRK14665 80 FIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMG------IFYLATGHYVRKQWIDGNYYITPAED---VDKDQS-FFLW 149 (360)
T ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcC------CCEEEECCccceeccCCcEEEEeecC---CCCCce-EEec
Confidence 0 001112356667643 57888999888 8999999987653322110 1110 001111 3345
Q ss_pred CCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCcc
Q 039743 368 GLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLA 414 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la 414 (531)
.++...--++++||.+++|+|||++|+++|++. +..+..+.+.|+.
T Consensus 150 ~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~-~a~k~eSq~iCF~ 195 (360)
T PRK14665 150 GLRQEILQRMLLPMGGMTKSEARAYAAERGFEK-VAKKRDSLGVCFC 195 (360)
T ss_pred CCCHHHHhheeccCcCCCHHHHHHHHHHCCCCc-cCcCCCCCccccC
Confidence 555544456899999999999999999999852 2345556677773
No 102
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.9e-19 Score=177.68 Aligned_cols=160 Identities=26% Similarity=0.322 Sum_probs=119.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC-------CChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL-------LRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL- 295 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~-------~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l- 295 (531)
..||+||+||||||+|+|+|+++. |.+|+++||.++. .+.++..++.+ +|++||||++++|+.+.|++.+
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~-va~~LGIp~~~vdf~~~y~~~V~ 80 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAER-VADQLGIPLYVVDFEKEFWNKVF 80 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHH-HHHHhCCceEEEchHHHHHHHHH
Confidence 568999999999999999999998 9999999998776 33456667776 8999999999999999988653
Q ss_pred --------cCC-CCcccccchhhHHHH--HHHHHHHHHhhhhcCCCCcEEEecccCCCccccC---CCCCCCCCcccccc
Q 039743 296 --------KGV-IDPETKRKIIGKEFI--CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESC---PPPGTGRTHSHTIK 361 (531)
Q Consensus 296 --------~~~-~~p~~kr~~~~~~~~--~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~---~~~g~g~~~~~~ik 361 (531)
.|. .||+ +.||..+ ..|.+.|.++| ++++++|| |--+.... ...++ .+.-|
T Consensus 81 ~~f~~~Y~~G~TPNPc----i~CN~~iKF~~~l~~a~~lg------ad~iATGH-Yar~~~~~~~~~l~r~----~D~~K 145 (356)
T COG0482 81 EYFLAEYKAGKTPNPC----ILCNKEIKFKALLDYAKELG------ADYIATGH-YARQREDEGIELLLRG----VDLNK 145 (356)
T ss_pred HHHHHHHhCCCCCCcc----hhcCHHHHHHHHHHHHHHcC------CCeEEEee-eEeeecCCcccccccC----CCccc
Confidence 232 2454 7776644 46777888877 89999999 33332211 11222 22222
Q ss_pred cc-cccCCCCcccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 362 SH-HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 362 t~-~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
.+ +.+..+.+..--+++-||.+|.|.|||++|++.|||.
T Consensus 146 DQsYfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~ 185 (356)
T COG0482 146 DQSYFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPT 185 (356)
T ss_pred chhheecccCHHHHhhccccCCCCCHHHHHHHHHHcCCCc
Confidence 22 4455555555556899999999999999999999995
No 103
>PLN02327 CTP synthase
Probab=99.79 E-value=5.6e-19 Score=186.90 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=118.8
Q ss_pred EEEEE-eC---CCCcHHHHHHHHHH----CCCEEEEEeCCC-Chhc------------c--ccCCCCEEEEcCCCCCCCC
Q 039743 7 LVLIL-DY---GSQYTHLITRRIRS----LSILSLCLSGTC-SLDD------------I--TAKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 7 ~I~Il-D~---G~~~~~~i~r~l~~----~G~~~~v~~~~~-~~~~------------~--~~~~~dgiIlsGGp~s~~~ 63 (531)
+|+++ +| -+.| .++..+|+. ++..+.+.+.+. ++++ + .+.++|||++|||+++...
T Consensus 299 ~IalVGKY~~l~DAY-~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~ 377 (557)
T PLN02327 299 RIAMVGKYTGLSDSY-LSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGV 377 (557)
T ss_pred EEEEEecccCCcHhH-HHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCccc
Confidence 57877 33 3344 245566664 456666665432 1111 0 1467899999999875322
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC---c--------------------------ccceeee
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE---K--------------------------QEYGRME 114 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~---~--------------------------~e~G~~~ 114 (531)
. -....++++.++++|+||||+|||+++.+++..|.... . ..+|.+.
T Consensus 378 ~----G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~ 453 (557)
T PLN02327 378 E----GKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRR 453 (557)
T ss_pred c----cHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcc
Confidence 2 12345678888999999999999999999887665521 1 1223333
Q ss_pred EEEe-cCCccccCCCCCceEEEEeeccCcc-----ccC-CCCcEEEEEeCCC-cEEEEEECCCcEE-EEecCCCCCCCc-
Q 039743 115 ILVE-RSSGIFGNKKVGHHQVVWMSHGDEA-----VVL-PDGFEVVARSQQG-AVAAVENREKRLF-GLQYHPEVTHSP- 184 (531)
Q Consensus 115 v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v-----~~l-p~g~~vla~s~~~-~v~ai~~~~~~i~-gvQFHPE~~~~~- 184 (531)
..+. +++.+.+-+.....+.-.+.|+|.| ..+ .+|+++.|.++++ .+++++++++++| |+|||||+...+
T Consensus 454 ~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~ 533 (557)
T PLN02327 454 TYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPG 533 (557)
T ss_pred cccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCC
Confidence 3332 3333333333331122334445554 455 4799999999877 7999999888876 999999987543
Q ss_pred ccchhhhhheeccc
Q 039743 185 EGMETLRYFLFDVC 198 (531)
Q Consensus 185 ~g~~i~~~F~~~~~ 198 (531)
....+|..|+ +.|
T Consensus 534 ~~~pLF~~Fv-~Aa 546 (557)
T PLN02327 534 KPSPLFLGLI-AAA 546 (557)
T ss_pred CchHHHHHHH-HHH
Confidence 4578999998 555
No 104
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.1e-19 Score=181.49 Aligned_cols=187 Identities=22% Similarity=0.303 Sum_probs=137.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHC-CCEEEEE-eCCCChhc----cc-cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 7 LVLILDYGSQYTHLITRRIRSL-SILSLCL-SGTCSLDD----IT-AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~-G~~~~v~-~~~~~~~~----~~-~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
+++.||..++|+..+.+.|... |+.++++ ..+...++ +. +--+|+|++..||+++..+....+..+++..+
T Consensus 16 ~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~-- 93 (767)
T KOG1224|consen 16 RTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLEC-- 93 (767)
T ss_pred eEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHhc--
Confidence 5899999999999999999876 4444433 33332222 21 33489999999999885554333333444442
Q ss_pred CCCcEEEeeHHHHHHHHHcCCEEeecCcccceeee-EEEecC---CccccCCCCCceEEEEeeccCccccCCCCc-EEEE
Q 039743 80 NGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGF-EVVA 154 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~-~vla 154 (531)
+++||||||+|||.|+.+.|+.|...+.+.+|... ++...+ +.++.+.++. +.+..+|+-.+..+|-.. .+++
T Consensus 94 ~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~f~gi~sg~~~~--fK~~RYHSL~in~~pid~l~il~ 171 (767)
T KOG1224|consen 94 RDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNILFSGIPSGRNSD--FKVVRYHSLIINSLPIDLLPILW 171 (767)
T ss_pred CCCceeeeehhhHhHhhhcccceecCCCcccceeeeEEecCcEEEccCCCCCccc--ceeEEeEEEEecCCchhhhccee
Confidence 47999999999999999999999987777777543 443322 2455555566 999999999998888764 4444
Q ss_pred EeC--CC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 155 RSQ--QG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 155 ~s~--~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
.+. +| .++++.+.+.|.||+|||||...+..|.++|+||+ ++.
T Consensus 172 t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl-~lt 217 (767)
T KOG1224|consen 172 TIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFL-DLT 217 (767)
T ss_pred EeecCCceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHH-Hhh
Confidence 443 23 57888888899999999999999999999999998 544
No 105
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.78 E-value=2e-18 Score=167.70 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=63.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC--CCChHHHHHHHHhCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA--PAFPAGFLEWALSNGV 82 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~--~~~~~~l~~~~~~~~i 82 (531)
|++|+||.+++++... .++|+++|+++.++... +++ .++||||||||.+..+..-. ..+... ++.+.++++
T Consensus 1 ~m~igVLa~qG~~~e~-~~aL~~lG~ev~~v~~~---~~L--~~~DgLILPGGfs~~~~~L~~~~gl~~~-I~~~v~~g~ 73 (248)
T PLN02832 1 MMAIGVLALQGSFNEH-IAALRRLGVEAVEVRKP---EQL--EGVSGLIIPGGESTTMAKLAERHNLFPA-LREFVKSGK 73 (248)
T ss_pred CcEEEEEeCCCchHHH-HHHHHHCCCcEEEeCCH---HHh--ccCCEEEeCCCHHHHHHHHHhhcchHHH-HHHHHHcCC
Confidence 4579999999998654 69999999988876542 333 47799999998875433211 123333 444456799
Q ss_pred cEEEeeHHHHHHHHHc
Q 039743 83 YVLGICYGLQLMVQKL 98 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~ 98 (531)
|+||||.|||+|++..
T Consensus 74 PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 74 PVWGTCAGLIFLAERA 89 (248)
T ss_pred CEEEEChhHHHHHHHh
Confidence 9999999999999864
No 106
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.78 E-value=1.5e-18 Score=167.89 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=117.5
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHH---HHhhcC--C
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQF---LSKLKG--V 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f---~~~l~~--~ 298 (531)
++++|+||||+||+++++++.+. +.+|+++++|+|+....|.+.+++ +|+++|++ |+++|.+..- .+.+.+ .
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~-~~~v~alt~dygq~~~~El~~a~~-ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~ 79 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ-YDEVHCVTFDYGQRHRAEIDVARE-LALKLGARAHKVLDVTLLNELAVSSLTRDSI 79 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc-CCeEEEEEEEeCCCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccc
Confidence 57999999999999999999876 779999999999988888888876 89999996 9999997321 011111 0
Q ss_pred ---------CCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc---ccc
Q 039743 299 ---------IDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS---HHN 365 (531)
Q Consensus 299 ---------~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt---~~~ 365 (531)
.++...+..+.|..+ .+...+|.+.| ++.|+.|+|.+|... ++++ +..+++. ..+
T Consensus 80 ~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g------~~~I~~G~n~~D~~~----YpDc--r~~Fi~A~~~~~~ 147 (231)
T PRK11106 80 PVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVK------AEAVITGVCETDFSG----YPDC--RDEFVKALNHAVS 147 (231)
T ss_pred cCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcC------CCEEEEeeccCcCCC----CCCC--CHHHHHHHHHHHH
Confidence 011122323444433 33344677776 899999999999744 3332 1445555 222
Q ss_pred cCCCCcccccceecccccCCHHHHHHHHHHcC-CCc--cccccC
Q 039743 366 VGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN-VPE--QFLKRH 406 (531)
Q Consensus 366 ~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg-lp~--~~~~~~ 406 (531)
++. ...+++..||.+++|.||+++|+++| +|. +..|..
T Consensus 148 ~~~---~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~~~~~T~SC 188 (231)
T PRK11106 148 LGM---AKDIRFETPLMWLNKAETWALADYYGQLDLVRHETLTC 188 (231)
T ss_pred hcc---CCCcEEEecCCCCCHHHHHHHHHHcCCcccccCceeec
Confidence 221 23478999999999999999999999 886 666654
No 107
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.78 E-value=1.2e-18 Score=171.00 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=147.1
Q ss_pred cchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-----CcEEEEEEeCCCCChhHHHHHHHHHHHhCC
Q 039743 207 ENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-----DRLHCVFVDNGLLRYKERERVMDTFEKDLH 279 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-----~~v~~v~id~g~~~~~e~~~~~~~la~~lg 279 (531)
++.++..+..+++++.. .+++++++|||+||+++++|+.+++| .++.++.++++...+.+.+++.. +++.+|
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~-~~~~lg 84 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQD-LAEALG 84 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHH-HHHHhC
Confidence 34456667777777643 36899999999999999999999997 35999999998633556677776 789999
Q ss_pred CcEEEEECchHHHH---hhcCCC-CcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCC
Q 039743 280 LPVTCVDATDQFLS---KLKGVI-DPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPG 351 (531)
Q Consensus 280 i~~~vvd~~~~f~~---~l~~~~-~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g 351 (531)
+....+++++.+.. .+.... .+.......+|. +..+++.+|.+ .+.|+.||.. ..| ...|
T Consensus 85 ~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~--------~~~lVlGTgn--~sE--~~~G 152 (268)
T COG0171 85 IDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANK--------LGGLVLGTGN--KSE--LALG 152 (268)
T ss_pred CceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhh--------cCCEEEcCCc--HHH--HhcC
Confidence 99999999865432 111111 110011223333 33455555553 5678989843 333 2245
Q ss_pred CCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHh
Q 039743 352 TGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILR 431 (531)
Q Consensus 352 ~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~ 431 (531)
. .|++|+++. .+.|+.+|+|.+|++|++.+|+|++++.+.|+|+ |-.--+|+.|++.++-.+.
T Consensus 153 y--------~TkyGDg~~-------d~~Pi~~L~KtqV~~La~~l~ipe~I~~k~PTAe--L~~~~~~q~DE~~lg~~Y~ 215 (268)
T COG0171 153 Y--------FTKYGDGAV-------DINPIADLYKTQVYALARHLGIPEEILKKPPTAD--LWPDEPGQTDEAELGMPYE 215 (268)
T ss_pred c--------eecccCccc-------ChhhhcCCcHHHHHHHHHHcCCCHHHhcCCCCcc--ccCCCCCCCCHHHhCCCHH
Confidence 4 899999888 8999999999999999999999999999888765 3222346889999955999
Q ss_pred hhhHHHHHHH
Q 039743 432 QVDEIFIQSI 441 (531)
Q Consensus 432 ~~d~~~~~~l 441 (531)
..|.++...+
T Consensus 216 ~lD~~L~~~~ 225 (268)
T COG0171 216 ELDDILYGLL 225 (268)
T ss_pred HHHHHHHHhh
Confidence 9999976544
No 108
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.77 E-value=3.2e-18 Score=176.52 Aligned_cols=170 Identities=25% Similarity=0.323 Sum_probs=118.8
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC----------CChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL----------LRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~----------~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
++|+||+|||+||+|+|+++++. |.+|+++|++++. .+..+.+.+.+ +|+.+||+++++|+++.|.+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~-va~~lgIp~~vid~~~~f~~~ 78 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ-GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQA-ICEKLGIPLEKVNFQKEYWNK 78 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc-CCeEEEEEEEcccccccccccCcCCHHHHHHHHH-HHHHcCCCEEEEECHHHHHHH
Confidence 37999999999999999999997 9999999996432 22345566665 899999999999998877543
Q ss_pred h---------cCCCCcccccchhhHHHH--HHHHHHHHHh-hhhcCCCCcEEEecccCCCccccC---CCCCCCCCcccc
Q 039743 295 L---------KGVIDPETKRKIIGKEFI--CIFDAFAHDL-EQKLGKKPAYLVQGTLYPDVIESC---PPPGTGRTHSHT 359 (531)
Q Consensus 295 l---------~~~~~p~~kr~~~~~~~~--~~~~~~a~~~-g~~~~~~~~~l~~Gt~~~D~~es~---~~~g~g~~~~~~ 359 (531)
+ .+. .| ..|+.|+.++ ..+.+.|++. | +++|++||+..+..+.. ...+. +.
T Consensus 79 v~~~~~~~y~~g~-tp--npC~~Cnr~iKf~~l~~~a~~~~G------~~~IATGHya~~~~d~~~~~l~~~~-----d~ 144 (352)
T TIGR00420 79 VFEPFIQEYKEGR-TP--NPDILCNKFIKFGAFLEYAAELLG------NDKIATGHYARIAEIEGKSLLLRAL-----DK 144 (352)
T ss_pred HHHHHHHHHHcCC-CC--CcchhhhHHHHHHHHHHHHHHHcC------CCEEEECCcceEeCCCCcEEEEEcc-----CC
Confidence 3 122 12 2457777754 5778888886 7 89999999884432211 11111 11
Q ss_pred ccc-ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCC-CCCCCc
Q 039743 360 IKS-HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP-FPGPGL 413 (531)
Q Consensus 360 ikt-~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P-~~~p~l 413 (531)
.|. -+.+..++.....++++||.+++|+|||++|+++|||. +..| +.+-|+
T Consensus 145 ~kDqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~---~~k~~Sq~iCF 197 (352)
T TIGR00420 145 NKDQSYFLYHLSHEQLAKLLFPLGELLKPEVRQIAKNAGLPT---AEKKDSQGICF 197 (352)
T ss_pred CcCcceecccCCHHHhhhhcccCCCCCHHHHHHHHHHcCCCC---CCCCCCCCeEE
Confidence 111 14455565444567999999999999999999999985 3344 345553
No 109
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.77 E-value=2.2e-18 Score=171.24 Aligned_cols=166 Identities=18% Similarity=0.224 Sum_probs=115.9
Q ss_pred hhhhhcc--ccCccceeeccCCCCCHHHHHHHHHHH-----hCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 214 VKCIKDT--VGLEDHVICALSGGVDSTVAATLVHKA-----IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 214 ~~~i~~~--v~~~~kvvvalSGGvDS~v~a~l~~k~-----~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
.+.|+++ +.++++++||+|||+||+++++++++. ++.++.++|+|+|+.... .+.+ +.+|+++||++++++
T Consensus 17 ~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~-~~~~-~~~~~~lgI~~~v~~ 94 (258)
T PRK10696 17 GQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFP-EHVL-PEYLESLGVPYHIEE 94 (258)
T ss_pred HHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCC-HHHH-HHHHHHhCCCEEEEE
Confidence 3444443 455789999999999999999999764 135899999999985432 2233 448999999999998
Q ss_pred CchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccc
Q 039743 287 ATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSH 363 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~ 363 (531)
.+..-. ...........|..|+..++..+.+.|++.| ++.|++|||.+|.+|+.. +.|.
T Consensus 95 ~~~~~~-~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g------~~~Ia~GH~~dD~~Et~l~nl~rg~----------- 156 (258)
T PRK10696 95 QDTYSI-VKEKIPEGKTTCSLCSRLRRGILYRTARELG------ATKIALGHHRDDILETLFLNMFYGG----------- 156 (258)
T ss_pred ecchhh-hhhhhccCCChhHHHHHHHHHHHHHHHHHcC------CCEEEEcCchHHHHHHHHHHHHhCC-----------
Confidence 653110 0011111112234555556678888999887 899999999999998632 1121
Q ss_pred cccCCCCcc-----cccceecccccCCHHHHHHHHHHcCCCc
Q 039743 364 HNVGGLPKD-----MKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 364 ~~~~~l~~~-----~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
++.++++. ..+.+++||.+++|+||+++++.+|+|.
T Consensus 157 -~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~ 197 (258)
T PRK10696 157 -KLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPI 197 (258)
T ss_pred -cccccCCeeecCCCceeEEecCccCCHHHHHHHHHHcCCCE
Confidence 12233322 1356999999999999999999999994
No 110
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.76 E-value=3.4e-18 Score=161.32 Aligned_cols=158 Identities=23% Similarity=0.217 Sum_probs=112.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCCh--hHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRY--KERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~--~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|++||+|||+||+++++++.+... .++.++|+|+|+... ++.+.+.+ +|+.+|++++++.... ... ...+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~---~~~-~~~~ 75 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVAD-LCAKLGIPLYILVVAL---APK-PGGN 75 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHH-HHHHcCCcEEEEeecc---ccC-CCCC
Confidence 689999999999999999988742 489999999998654 45666655 8999999999882211 001 1112
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCC---Ccccc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGL---PKDMK 374 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l---~~~~~ 374 (531)
++. .+...++..+.+.|+++| +++|++||+.+|++|+.. ..|.|. . ++.++ .....
T Consensus 76 ~~~---~~r~~r~~~l~~~a~~~~------~~~i~~Gh~~dD~~e~~l~~l~~g~~~------~---~l~~~~~~~~~~~ 137 (185)
T cd01992 76 LEA---AAREARYDFFAEIAKEHG------ADVLLTAHHADDQAETVLMRLLRGSGL------R---GLAGMPARIPFGG 137 (185)
T ss_pred HHH---HHHHHHHHHHHHHHHHcC------CCEEEEcCCcHHHHHHHHHHHHccCCc------c---cccCCCcccCCCC
Confidence 322 233446678889999888 899999999999988631 112110 0 11111 12346
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+++||.+++|+||+++++++|||. +..|++
T Consensus 138 ~~virPl~~~~k~eI~~~~~~~~l~~---~~~~~~ 169 (185)
T cd01992 138 GRLIRPLLGITRAEIEAYLRENGLPW---WEDPSN 169 (185)
T ss_pred CeEECCCCCCCHHHHHHHHHHcCCCe---EECCCC
Confidence 77999999999999999999999995 555544
No 111
>PRK13981 NAD synthetase; Provisional
Probab=99.75 E-value=6.5e-18 Score=185.01 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=147.3
Q ss_pred chhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 208 NVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
.+.+.+...|++++... ++++|++|||+||+++|+|+.+++| .+|++++++....+..+.+.+.+ +|+.+|+++++
T Consensus 262 ~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~-~a~~lgi~~~~ 340 (540)
T PRK13981 262 EDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAA-LAKNLGVRYDI 340 (540)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHH-HHHHcCCeEEE
Confidence 34566667777776543 6899999999999999999999999 68999999987777777777766 89999999999
Q ss_pred EECchHHHHh---hcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcc
Q 039743 285 VDATDQFLSK---LKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357 (531)
Q Consensus 285 vd~~~~f~~~---l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~ 357 (531)
+++++.|..- +....+........+|. +..+++..|... ++++.||..- .| ...|+
T Consensus 341 i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~--------~~lvlgt~n~--sE--~~~Gy----- 403 (540)
T PRK13981 341 IPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKF--------GSLVLTTGNK--SE--MAVGY----- 403 (540)
T ss_pred EECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhcc--------CCEEEeCCcc--CH--HHcCC-----
Confidence 9999765333 22111111111122343 233455555543 4577777432 22 22454
Q ss_pred cccccccccCCCCcccccceecccccCCHHHHHHHHHHcC-------CCccccccCCCCCCCccccccCCCCcchHHHHH
Q 039743 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN-------VPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDIL 430 (531)
Q Consensus 358 ~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg-------lp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~ 430 (531)
.|++|+++. .+.|+.+++|+||+++|+.+| +|+.++.+.|+++ | .+|+.+++.|+ .+
T Consensus 404 ---~t~~GD~~~-------~~~pi~~l~K~~v~~la~~~~~~~~~~~vp~~i~~~~psa~--l---~~~q~de~~l~-~Y 467 (540)
T PRK13981 404 ---ATLYGDMAG-------GFAPIKDVYKTLVYRLCRWRNTVSPGEVIPERIITKPPSAE--L---RPNQTDQDSLP-PY 467 (540)
T ss_pred ---eEecCCccc-------CccccCCCCHHHHHHHHHHHHhhcCCCcchHHHhCCCCCCC--C---CCCCcCccccC-CH
Confidence 788887765 789999999999999999999 9999999988776 3 47999999995 99
Q ss_pred hhhhHHHHHHHH
Q 039743 431 RQVDEIFIQSIK 442 (531)
Q Consensus 431 ~~~d~~~~~~l~ 442 (531)
+..|.++...+.
T Consensus 468 ~~lD~~l~~~~~ 479 (540)
T PRK13981 468 DVLDAILERLVE 479 (540)
T ss_pred HHHHHHHHHHHH
Confidence 999999766553
No 112
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.75 E-value=1e-17 Score=173.50 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=117.4
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCC-cEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhc--CC-C
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLK--GV-I 299 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~-~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~--~~-~ 299 (531)
.++|+||+|||+||+++++++++.+|. +|+|+|+|+|+. .+|.+.+.+ +|+++|++++++|.++.|.+..- .+ .
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~~-~~e~~~a~~-~a~~lGi~~~vvd~~eef~~~~i~~~i~~ 79 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQP-EEEIKEAEE-KAKKLGDKHYTIDAKEEFAKDYIFPAIKA 79 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCCC-hHHHHHHHH-HHHHcCCCEEEEeCHHHHHHHHHHHHHHh
Confidence 468999999999999999999998886 999999999963 456777766 89999999999999977753210 01 1
Q ss_pred Ccccccc-----hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 300 DPETKRK-----IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 300 ~p~~kr~-----~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
++..+++ .|...+++.+.+.|++.| ++++++||+.. |+.. +.+ ++...
T Consensus 80 n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G------~~~IA~G~t~~gnDq~r----fe~---------------~~~a~ 134 (394)
T PRK13820 80 NALYEGYPLGTALARPLIAEKIVEVAEKEG------ASAIAHGCTGKGNDQLR----FEA---------------VFRAS 134 (394)
T ss_pred CccccCCcCcHHHHHHHHHHHHHHHHHHcC------CCEEEECCCCCcchHHH----HHH---------------hhHhh
Confidence 2222221 344446678888899888 89999999655 7652 111 12222
Q ss_pred cccceeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 MKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 ~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+++++.|+++ ++|+|++++|+++|||.......|++
T Consensus 135 -~l~viaP~re~~ltK~ei~~ya~~~gip~~~~~~~~yS 172 (394)
T PRK13820 135 -DLEVIAPIRELNLTREWEIEYAKEKGIPVPVGKEKPWS 172 (394)
T ss_pred -cCeeeCchhccCCCHHHHHHHHHHcCCCCCcCCCCCcc
Confidence 4679999999 89999999999999997544455655
No 113
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.75 E-value=3e-17 Score=160.96 Aligned_cols=175 Identities=20% Similarity=0.209 Sum_probs=119.2
Q ss_pred EEE-eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCCCCCC--CC---CCC-hHHHHHHHHhC
Q 039743 9 LIL-DYGSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVHSP--DA---PAF-PAGFLEWALSN 80 (531)
Q Consensus 9 ~Il-D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s~~~~--~~---~~~-~~~l~~~~~~~ 80 (531)
+|| ..|+.....++++++++|+++++++.+..... ....++|||||+||++..... .. ... ..++++.+.++
T Consensus 2 ~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~ 81 (238)
T cd01740 2 AVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAER 81 (238)
T ss_pred EEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhC
Confidence 444 55888888999999999999999987543211 124679999999998622111 11 111 34667777888
Q ss_pred CCcEEEeeHHHHHHHHH--cCCEEeecCccccee------eeEEEec-CCccccCCCCCceEEEEeeccCccccCC----
Q 039743 81 GVYVLGICYGLQLMVQK--LDGVVKVGEKQEYGR------MEILVER-SSGIFGNKKVGHHQVVWMSHGDEAVVLP---- 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~--~GG~v~~~~~~e~G~------~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v~~lp---- 147 (531)
++||||||+|+|+|+++ ++|.+.+.+..++.. ..+++.. ++++++.+.....+.+|.+|++.-.-.+
T Consensus 82 g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~ 161 (238)
T cd01740 82 GGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEGRFYADDETL 161 (238)
T ss_pred CCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceEEEEEcCCCCceecCCCCCCEEEEEeECCceeeEcCHHHH
Confidence 99999999999999997 899888777666644 4455443 3567766322223899999997432111
Q ss_pred -----CCcEEE--------E----EeCCC---cEEEEEECCCcEEEEecCCCCCCC
Q 039743 148 -----DGFEVV--------A----RSQQG---AVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 148 -----~g~~vl--------a----~s~~~---~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
.+-.+- + .++++ .|+++.+++++++|++.|||+...
T Consensus 162 ~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~GrvlglMphPer~~~ 217 (238)
T cd01740 162 AELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVE 217 (238)
T ss_pred HHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCCEEEEcCChHHccc
Confidence 111110 0 13444 489999999999999999998743
No 114
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.73 E-value=9.6e-18 Score=173.68 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=117.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh-----hcC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK-----LKG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~-----l~~ 297 (531)
.+||+||+|||+||+++++++++.+|.+|+|+|+|.|+. .|.+.+.+ +|+.+|+ +++++|+++.|.+. +..
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~-~A~~lGi~~~~viD~~~ef~~~~i~~~i~~ 78 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIRE-KALKSGASEIYVEDLREEFVRDYVFPAIRA 78 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHH-HHHHcCCCeEEEEcCHHHHHHHhHHHHHHh
Confidence 368999999999999999999998899999999999986 56777766 8999998 68888999777532 211
Q ss_pred CCCccccc-----chhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccccccCCC
Q 039743 298 VIDPETKR-----KIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSHHNVGGL 369 (531)
Q Consensus 298 ~~~p~~kr-----~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~~~~~~l 369 (531)
++...+ +.+|+. ..+.+.+.|++.| ++++++|++. +|+.. ++| ++
T Consensus 79 --n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G------~~~IA~G~t~kGnDq~r----f~~---------------g~ 131 (399)
T PRK00509 79 --NALYEGKYPLGTALARPLIAKKLVEIARKEG------ADAVAHGCTGKGNDQVR----FEL---------------GI 131 (399)
T ss_pred --ChHhcCcCCCchHHHHHHHHHHHHHHHHHcC------CCEEEeCCCcCCCCHHH----HHH---------------HH
Confidence 111112 235565 4456778888887 8999999988 77654 223 12
Q ss_pred Cccc-ccceecccccC---CHHHHHHHHHHcCCCccccccCCCC
Q 039743 370 PKDM-KLKLIEPLKLL---FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 370 ~~~~-~~~ii~PL~~l---~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+.. +++++.|++++ +|+|+|++|+++|||...-...|++
T Consensus 132 ~al~pel~VisPlre~~~~tK~eir~~A~~~Gipv~~~~~~~yS 175 (399)
T PRK00509 132 AALAPDLKVIAPWREWDLKSREELIAYAEEHGIPIPVTKKSPYS 175 (399)
T ss_pred HHhCCCCeeecchhhcCCCCHHHHHHHHHHcCCCCCCCCCCCCc
Confidence 2222 45799999996 9999999999999997544455665
No 115
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.73 E-value=2.8e-17 Score=169.03 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=119.9
Q ss_pred CccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh-------
Q 039743 223 LEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL------- 295 (531)
Q Consensus 223 ~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l------- 295 (531)
++++|+||+|||+||+++|+++++. |.+++++|+++. ..+.+.+.+ +|+++||+++++|+++.|....
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~-G~eV~av~~~~~---~~e~~~a~~-va~~LGI~~~vvd~~~~f~~~v~~~~~~~ 78 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQ-GYEIVGVTMRVW---GDEPQDARE-LAARMGIEHYVADERVPFKDTIVKNFIDE 78 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHc-CCcEEEEEecCc---chhHHHHHH-HHHHhCCCEEEEeChHHHHHHHHHHhHHH
Confidence 3579999999999999999999885 999999999874 234555555 8999999999999987665321
Q ss_pred --cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC--CCCCCCcccccccc-cccCC
Q 039743 296 --KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP--PGTGRTHSHTIKSH-HNVGG 368 (531)
Q Consensus 296 --~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~--~g~g~~~~~~ikt~-~~~~~ 368 (531)
.+.+ | ..|+.|+.. +..+.+.|+++| +++|++||+..+....... .+. .+..|.. +-+..
T Consensus 79 ~~~G~t-p--npC~~Cn~~iKf~~L~~~A~~~G------~~~IATGHyar~~~~~~~~~l~~g----~D~~kDQsyfl~~ 145 (362)
T PRK14664 79 YRQGRT-P--NPCVMCNPLFKFRMLIEWADKLG------CAWIATGHYSRLEERNGHIYIVAG----DDDKKDQSYFLWR 145 (362)
T ss_pred HHcCCC-C--CCchhhhHHHHHHHHHHHHHHcC------CCEEEECCccccccCCCeEEEEEc----CCCcchHHHHHHh
Confidence 1221 2 134777764 457888898888 8999999977542211100 011 1222222 22444
Q ss_pred CCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCcc
Q 039743 369 LPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLA 414 (531)
Q Consensus 369 l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la 414 (531)
++...--+++.||.+++|+|||++|+++|||. ...+..+.|-|+.
T Consensus 146 l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~-~a~k~dSq~iCFi 190 (362)
T PRK14664 146 LGQDILRRCIFPLGNYTKQTVREYLREKGYEA-KSKEGESMEVCFI 190 (362)
T ss_pred cCHHHHhHHhccCccCCHHHHHHHHHHcCCCC-CCCCCCCCcceee
Confidence 55443346999999999999999999999983 1244455677764
No 116
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.73 E-value=4.8e-17 Score=175.11 Aligned_cols=184 Identities=16% Similarity=0.224 Sum_probs=125.8
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChh--HHHHHHHHHHHhC----CCcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYK--ERERVMDTFEKDL----HLPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~--e~~~~~~~la~~l----gi~~~vvd~~~~f~~~ 294 (531)
++..+|+++++|||+||+|+++++++. |.+++++|+|+|..... +.+.+.. +++++ +++++++++.+.+.+.
T Consensus 174 ~g~~gk~lvllSGGiDS~va~~~~~kr-G~~v~~l~f~~g~~~~~~~~~~~a~~-l~~~~~~~~~~~l~~v~~~~~~~~i 251 (482)
T PRK01269 174 LGTQEDVLSLISGGFDSGVASYMLMRR-GSRVHYCFFNLGGAAHEIGVKQVAHY-LWNRYGSSHRVRFISVDFEPVVGEI 251 (482)
T ss_pred ccccCeEEEEEcCCchHHHHHHHHHHc-CCEEEEEEEecCCchhHHHHHHHHHH-HHHHhCccCCceEEEEecHHHHHHH
Confidence 466789999999999999999999887 99999999999986432 3333333 55544 4668888887765443
Q ss_pred hcCCCCcccccc-hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 295 LKGVIDPETKRK-IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 295 l~~~~~p~~kr~-~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
+... |+.-++ ++.+.|+++...+|++.| ++.|++|++.+|... +|..|+..+....
T Consensus 252 ~~~~--~~~~~~~v~rR~ml~iA~~~A~~~g------a~~IvtG~~l~dvas---------------qtl~nl~~~~~~~ 308 (482)
T PRK01269 252 LEKV--DDGQMGVVLKRMMLRAASKVAERYG------IQALVTGEALGQVSS---------------QTLTNLRLIDNVT 308 (482)
T ss_pred HhcC--CCceecHHHHHHHHHHHHHHHHHcC------CCEEEECcChHhhhh---------------HHHHHHHhhhhhc
Confidence 3322 222233 333334555566666666 899999999999753 2223332222223
Q ss_pred ccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhh
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVD 434 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d 434 (531)
++.+++||..++|.||.++|+++|++. +..++|.+|...- .-..|+..+ +.+++.+
T Consensus 309 ~~~v~rPLi~~dK~EIi~~a~~ig~~~---~s~~~p~~C~~~~-~~p~~~~~~-~~~~~~~ 364 (482)
T PRK01269 309 DTLILRPLIAMDKEDIIDLAREIGTED---FAKTMPEYCGVIS-KKPTVKAVK-EKIEAEE 364 (482)
T ss_pred CCceecCCcCCCHHHHHHHHHHhCChh---hcccCCCCceeeC-CCCcCCCCH-HHHHHHh
Confidence 467899999999999999999999864 3456677774332 355677777 6666544
No 117
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=99.72 E-value=5.2e-17 Score=165.69 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=144.0
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHH-HhC-----CCcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFE-KDL-----HLPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la-~~l-----gi~~~vvd~~~~f~~~ 294 (531)
++..+|+++.+|||+||.|+++++.|. |.+++++|++++-...++..+-...++ ..+ .+.++++++.+.. ..
T Consensus 172 vGt~Gk~l~LlSGGIDSPVA~~l~mkR-G~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~-~~ 249 (383)
T COG0301 172 VGTQGKVLLLLSGGIDSPVAAWLMMKR-GVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQ-EE 249 (383)
T ss_pred cccCCcEEEEEeCCCChHHHHHHHHhc-CCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHH-HH
Confidence 566789999999999999999999998 999999999876655554443333344 222 4678888887654 33
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+....++...+-++.+.|+++..++|++.| +..|++|....++.. +|..|+..+....+
T Consensus 250 i~~~~~~~y~~v~~rR~M~riA~~iae~~g------~~aIvtGEsLGQVAS---------------QTl~nL~~i~~~t~ 308 (383)
T COG0301 250 ILEKVPESYRCVLLKRMMYRIAEKLAEEFG------AKAIVTGESLGQVAS---------------QTLENLRVIDSVTN 308 (383)
T ss_pred HHhhcCccceehHHHHHHHHHHHHHHHHhC------CeEEEecCcchhhhH---------------hHHHHHHHHHhccC
Confidence 444444445555666668899999999988 899999999988864 55566655555567
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhh
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVD 434 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d 434 (531)
..+++||..++|+||.++|+++|..+ +..+|+..||.....+...|..++ ...++.+
T Consensus 309 ~pIlRPLI~~DK~eIi~~Ar~IgT~e--iSi~p~e~cc~~f~p~~p~t~~~~-~~~e~~e 365 (383)
T COG0301 309 TPVLRPLIGLDKEEIIEIARRIGTYE--ISIEPPEDCCVIFAPPTPKTKPKL-IEAEKLE 365 (383)
T ss_pred CceeccccCCCHHHHHHHHHHhCChh--hhccCCCCCcCccCCCCCccCcch-hHHHHHh
Confidence 78999999999999999999999987 788899999998887777776666 4444433
No 118
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3.8e-17 Score=165.93 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=117.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCCh--hHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRY--KERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~--~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
+++++||||||+||+++++++.+..+ .++.++|||+|+... .+.+.+ +.+|+.+|+++.+.+....+......
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--- 96 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELV-EKLCEKLGIPLIVERVTDDLGRETLD--- 96 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHH-HHHHHHhCCceEEEEEEeeccccccC---
Confidence 57999999999999999999999844 599999999999864 333444 45899999999999887654221110
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCcc---cc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPKD---MK 374 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~~---~~ 374 (531)
-..-|.+|+..++.++.+.|++.| ++.|++|||.+|.+|+.. +.|.+ . . ++.+++.. .+
T Consensus 97 ~~~~c~~c~~~R~~~l~~~a~~~g------~~~i~tgH~~dD~~et~lm~l~~g~~---~---~---~l~~~~~~~~~~~ 161 (298)
T COG0037 97 GKSICAACRRLRRGLLYKIAKELG------ADKIATGHHLDDQAETFLMNLLRGSG---L---R---GLRGMPPKRPFEG 161 (298)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcC------CCeEEeccCcHHHHHHHHHHHHcCcH---h---h---HHhhCCcccccCC
Confidence 011245666778889999999998 899999999999999731 12321 0 0 12233322 23
Q ss_pred c-ceecccccCCHHHHHHHHHHcCCCc
Q 039743 375 L-KLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 375 ~-~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
. .+++||..+.++||+.++...|+|.
T Consensus 162 ~~~~iRPL~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 162 GLLIIRPLLYVREKEIELYAKEKGLPY 188 (298)
T ss_pred CCeeeeecccCCHHHHHHHHHHcCCCE
Confidence 3 5999999999999999999999984
No 119
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.71 E-value=5.3e-17 Score=155.44 Aligned_cols=157 Identities=23% Similarity=0.289 Sum_probs=108.9
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHH--HH-hhcCCC-Ccc
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF--LS-KLKGVI-DPE 302 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f--~~-~l~~~~-~p~ 302 (531)
++|++|||+||+++++++++. |.++.++++++|.....|.+.+.+ +|+.+|+++++++++... .. .+.+.. .+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~-g~~v~~~~~~~~~~~~~e~~~a~~-~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE-GYEVHAITFDYGQRHSRELESARK-IAEALGIEHHVIDLSLLKQLGGSALTDESEIPP 78 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc-CCcEEEEEEECCCCCHHHHHHHHH-HHHHhCCCeEEEechhhcccccccccCCCCCCC
Confidence 589999999999999999886 889999999999876667777765 899999999999997421 00 011100 011
Q ss_pred ---------cccchhhHH--HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 303 ---------TKRKIIGKE--FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 303 ---------~kr~~~~~~--~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
.++++.|+. |+.+...+|++.| ++.|++|++.+|+.+. +..+|+ +...+++..+.+ .
T Consensus 79 ~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g------~~~v~~G~~~~d~~~~-~d~~~~--f~~~~~~~~~~~---~ 146 (201)
T TIGR00364 79 QKSNEEDTLPNTFVPGRNAIFLSIAASYAEALG------AEAVITGVCETDFSGY-PDCRDE--FVKAFNHALNLG---M 146 (201)
T ss_pred cCccccCCCCCeeecCCcHHHHHHHHHHHHHCC------CCEEEEEeccCcCCCC-CCCcHH--HHHHHHHHHHhh---c
Confidence 123333333 3477788888887 8999999999997431 112331 112223322221 1
Q ss_pred ccccceecccccCCHHHHHHHHHHcC
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILN 397 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lg 397 (531)
...+++++||.+++|.||+++|+++|
T Consensus 147 ~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 147 LTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred CCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 23467999999999999999999999
No 120
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.71 E-value=2.9e-16 Score=147.32 Aligned_cols=184 Identities=21% Similarity=0.263 Sum_probs=128.1
Q ss_pred CCEEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccC-CCCEEEEcCCCCCCCCCC--CCCC-----hHHHHH
Q 039743 5 PELVLILDYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAK-NPRVVILSGGPHSVHSPD--APAF-----PAGFLE 75 (531)
Q Consensus 5 ~~~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~-~~dgiIlsGGp~s~~~~~--~~~~-----~~~l~~ 75 (531)
++||+||-|.+.+ ....+++++.+|++++.++.++.. .. ++|+|++|||.| |.+- .-++ ..+-++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~----~~~~~d~vv~pGGFS--yGDyLr~Gaiaa~~~v~~~v~ 75 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLL----LGRDFDGVVLPGGFS--YGDYLRAGAIAAIAPVMDEVR 75 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecc----cCCCccEEEEcCCCC--cccccCcchHHhhHHHHHHHH
Confidence 3689999996555 556889999999999999875432 23 689999999998 3221 1111 122334
Q ss_pred HHHhCCCcEEEeeHHHHHHHH--HcCCEEeecCcccce--eeeEEEec-CCccccCCCCCceEEEEeeccCccc------
Q 039743 76 WALSNGVYVLGICYGLQLMVQ--KLDGVVKVGEKQEYG--RMEILVER-SSGIFGNKKVGHHQVVWMSHGDEAV------ 144 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~--~~GG~v~~~~~~e~G--~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v~------ 144 (531)
.+.+.++|+||||.|+|+|.+ .+.|...++....|- +..+++.. ++++++++...+.+.+.-+|++.-.
T Consensus 76 ~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~ 155 (231)
T COG0047 76 EFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDET 155 (231)
T ss_pred HHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHH
Confidence 445579999999999999997 367888887666554 44455553 4678888877556888889986531
Q ss_pred --cCCCCcEEEEE------------eCCC---cEEEEEECCCcEEEEecCCCCCC-----Ccccchhhhhhe
Q 039743 145 --VLPDGFEVVAR------------SQQG---AVAAVENREKRLFGLQYHPEVTH-----SPEGMETLRYFL 194 (531)
Q Consensus 145 --~lp~g~~vla~------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~-----~~~g~~i~~~F~ 194 (531)
+|-+.-+++.. ++++ .|+++.+.+++++|++.|||+.. +.+|.++|++.+
T Consensus 156 l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~ 227 (231)
T COG0047 156 LAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSAR 227 (231)
T ss_pred HHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCCEEEecCCchhhhhcccCCchHHHHHHHHH
Confidence 22222223322 3344 48999999999999999999853 446788888765
No 121
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.71 E-value=5.7e-16 Score=152.88 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=126.8
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCCCC--CCCCC---CCh---HHHHH
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVH--SPDAP---AFP---AGFLE 75 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s~~--~~~~~---~~~---~~l~~ 75 (531)
+||+||.+ |+......+++++++|+.+++++.....+. ....++|+|+|+||.+... ..... .+. .+.++
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik 83 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIE 83 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHH
Confidence 57999998 666677889999999999998886432211 1246799999999975211 11111 111 14566
Q ss_pred HHHhCCCcEEEeeHHHHHHHHH--cCC----------EEeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeecc
Q 039743 76 WALSNGVYVLGICYGLQLMVQK--LDG----------VVKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSHG 140 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~~--~GG----------~v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~ 140 (531)
.+.++++||||||+|+|+|+++ +.| ++.++....| -|..+.+.. .+++++++... .+.++..|+
T Consensus 84 ~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~~~s~~~~~~~~~-~~~~piah~ 162 (261)
T PRK01175 84 EFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKENRKCIFTKLLKKD-VFQVPVAHA 162 (261)
T ss_pred HHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECCCCChhHhccCCC-EEEEeeEcC
Confidence 7778899999999999999984 444 5555544444 355555554 56888888733 477788898
Q ss_pred Ccccc---------CC-CCcEEEEE------------eCCC---cEEEEEECCCcEEEEecCCCCCCC------------
Q 039743 141 DEAVV---------LP-DGFEVVAR------------SQQG---AVAAVENREKRLFGLQYHPEVTHS------------ 183 (531)
Q Consensus 141 ~~v~~---------lp-~g~~vla~------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~~------------ 183 (531)
+.-.- |- .+..++-. ++++ .||++.+++++++|++.|||+...
T Consensus 163 eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~vlglMpHPEr~~~~~~~~~~~~~~~ 242 (261)
T PRK01175 163 EGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPERAFYGYQHPYWEKEED 242 (261)
T ss_pred CcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCCEEEEcCCHHHhhchhhccccccccC
Confidence 75322 11 12222222 3344 589999999999999999997532
Q ss_pred -cccchhhhhhe
Q 039743 184 -PEGMETLRYFL 194 (531)
Q Consensus 184 -~~g~~i~~~F~ 194 (531)
.+|..||+|++
T Consensus 243 ~~~g~~~f~~~~ 254 (261)
T PRK01175 243 YGDGKIFFDSLI 254 (261)
T ss_pred CCchHHHHHHHH
Confidence 26888888875
No 122
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.70 E-value=1.8e-16 Score=146.35 Aligned_cols=167 Identities=19% Similarity=0.267 Sum_probs=115.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCC--CCCCCCCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV--HSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~--~~~~~~~~~~~l~~~~~~~~iP 83 (531)
.+|+||.+.+.+.. ..++++.+|+++.++. +.+++ .++|+||||||+++. .-.....+. +.++...+ ++|
T Consensus 3 ~~igVLalqG~~~E-h~~al~~lG~~v~~v~---~~~~l--~~~D~LILPGG~~t~~~~ll~~~~l~-~~Ik~~~~-~kp 74 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKSLGVEVKLVK---FNNDF--DSIDRLVIPGGESTTLLNLLNKHQIF-DKLYNFCS-SKP 74 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHHcCCcEEEEC---CHHHH--hCCCEEEECCChHHHHHHHhhhcCcH-HHHHHHHc-CCc
Confidence 57999999888865 7899999999877764 23333 578999999997643 111112233 34444444 679
Q ss_pred EEEeeHHHHHHHHH---cC---CEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeC
Q 039743 84 VLGICYGLQLMVQK---LD---GVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQ 157 (531)
Q Consensus 84 vLGIC~G~Qlla~~---~G---G~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~ 157 (531)
++|||.|||+|++. +| |+|.++. ||...-+....-. +.+. . ++..+.....+.+..++.+++|+.+
T Consensus 75 ilGICaG~qlL~~~s~~Lg~idg~V~Rn~---~Grq~~sf~~~~~-~~~~--~--~~~vFiRAP~i~~~~~~v~vla~~~ 146 (179)
T PRK13526 75 VFGTCAGSIILSKGEGYLNLLDLEVQRNA---YGRQVDSFVADIS-FNDK--N--ITGVFIRAPKFIVVGNQVDILSKYQ 146 (179)
T ss_pred EEEEcHHHHHHHccCCCCCCccEEEEEcC---CCCccceeeeecC-cCCc--e--EEEEEEcCceEeEcCCCcEEEEEEC
Confidence 99999999999993 33 6676663 4433222221111 1222 3 8888999999999999999999997
Q ss_pred CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 158 ~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.+| |++ +++++++-||||.+.+ .++.+.|+
T Consensus 147 ~~~v-~v~--q~~~l~~~FHPElt~d---~r~h~~f~ 177 (179)
T PRK13526 147 NSPV-LLR--QANILVSSFHPELTQD---PTVHEYFL 177 (179)
T ss_pred CEEE-EEE--ECCEEEEEeCCccCCC---chHHHHHh
Confidence 6544 444 5899999999999876 34555564
No 123
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.70 E-value=6.5e-17 Score=165.96 Aligned_cols=185 Identities=17% Similarity=0.190 Sum_probs=123.8
Q ss_pred EEEEE----eCCCCcHHHHHHHHHHCC----CEEEEEeCCC-Chhc--c-ccC-CCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL----DYGSQYTHLITRRIRSLS----ILSLCLSGTC-SLDD--I-TAK-NPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~~~G----~~~~v~~~~~-~~~~--~-~~~-~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ +.-+.|. ++..+|+.+| +.+.+.+.+. +.++ . ... .+|||++|||.+..--+. ....
T Consensus 290 ~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~RG~eG----kI~A 364 (533)
T COG0504 290 TIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRGVEG----KIAA 364 (533)
T ss_pred EEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcCchHH----HHHH
Confidence 47777 4445553 5666777655 4566666543 2111 1 011 289999999998422111 3467
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHHcCCEEeec------------------------------CcccceeeeEEEecCCcc
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQKLDGVVKVG------------------------------EKQEYGRMEILVERSSGI 123 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~------------------------------~~~e~G~~~v~~~~~~~l 123 (531)
+++|+++++|+||||+|||++...+--.|... .....|.+++.+.+++..
T Consensus 365 i~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT~a 444 (533)
T COG0504 365 IRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGTLA 444 (533)
T ss_pred HHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCcHH
Confidence 79999999999999999999987542211110 123456666666666544
Q ss_pred ccCCCCCceEEEEeeccCccc-----cC-CCCcEEEEEeCC-CcEEEEEECCCcE-EEEecCCCCCCCc-ccchhhhhhe
Q 039743 124 FGNKKVGHHQVVWMSHGDEAV-----VL-PDGFEVVARSQQ-GAVAAVENREKRL-FGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 124 ~~~~~~~~~~~v~~~H~~~v~-----~l-p~g~~vla~s~~-~~v~ai~~~~~~i-~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
.+-+... ...--+-|.|.+. .+ ..|+.+.+.+++ ..+++++.+++|+ +|+|||||+.+.+ .++.+|..|+
T Consensus 445 ~~lY~~~-~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv 523 (533)
T COG0504 445 AKLYGKD-EIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFV 523 (533)
T ss_pred HHHhCCC-eeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHH
Confidence 4444332 2566677887763 22 358999999986 5899999999885 5999999998766 6899999998
Q ss_pred eccc
Q 039743 195 FDVC 198 (531)
Q Consensus 195 ~~~~ 198 (531)
++|
T Consensus 524 -~Aa 526 (533)
T COG0504 524 -KAA 526 (533)
T ss_pred -HHH
Confidence 444
No 124
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.70 E-value=7.4e-17 Score=167.34 Aligned_cols=149 Identities=17% Similarity=0.239 Sum_probs=111.3
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHHhhc--C-CCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLSKLK--G-VID 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~~l~--~-~~~ 300 (531)
+||+||+|||+||+++++++++.+|.+|+|+++|.|+ ...|.+.+.+ +|+.+|++ ++++|+.+.|.+..- . ..|
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq-~~~el~~a~~-~A~~lGi~~~~v~dl~~ef~~~~i~p~i~~N 83 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ-GIEELEGLEA-KAKASGAKQLVVKDLREEFVRDYIFPCLRAN 83 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC-ChHHHHHHHH-HHHHcCCCEEEEEeCHHHHHHhhcCHHHHcC
Confidence 5899999999999999999988779999999999997 3456677766 89999997 588899988854321 0 123
Q ss_pred cc-cccchhhH-----HHHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 301 PE-TKRKIIGK-----EFICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 301 p~-~kr~~~~~-----~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
+. ++|+.|+. ...+.+.+.|++.| ++++++|++. +|+.. +++ ++.+.
T Consensus 84 a~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G------~~~VahG~tgkGnDq~r----f~~---------------~~~al 138 (404)
T PLN00200 84 AIYEGKYLLGTSMARPLIAKAMVDIAKEVG------ADAVAHGATGKGNDQVR----FEL---------------TFFAL 138 (404)
T ss_pred CcccceeccccchhhHHHHHHHHHHHHHcC------CCEEEeCCcCCCCcHHH----HHH---------------HHHHh
Confidence 34 33444444 23456677788887 8999999987 77643 222 12222
Q ss_pred c-ccceecccccC---CHHHHHHHHHHcCCCc
Q 039743 373 M-KLKLIEPLKLL---FKDEVRQLGRILNVPE 400 (531)
Q Consensus 373 ~-~~~ii~PL~~l---~K~eVr~la~~lglp~ 400 (531)
. +++++.|++++ +|+|+|++|+++|||.
T Consensus 139 ~pel~ViaPlre~~~~~r~e~~~~A~~~Gipv 170 (404)
T PLN00200 139 NPELKVVAPWREWDIKGREDLIEYAKKHNIPV 170 (404)
T ss_pred CCCCeeeCchhhcCCCCHHHHHHHHHHcCCCC
Confidence 2 45799999995 3999999999999994
No 125
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=9e-17 Score=155.56 Aligned_cols=172 Identities=24% Similarity=0.343 Sum_probs=115.5
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC---------CChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL---------LRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~---------~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
..+|+||+||||||+|+|+|+++. |.++.+|||-+.. ..+.+.++|.. +|++|+|+++.|++..+|+..
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~~~-g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~-Vc~~LnI~~~~Vnf~kEYW~~ 82 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLAAR-GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKR-VCKQLNIPLHQVNFVKEYWND 82 (377)
T ss_pred cceEEEEecCCchHHHHHHHHHhc-CCCeeEEeeeccccccccccCCCchhhHHHHHH-HHHHhCCeeEEEeeHHHHHHH
Confidence 468999999999999999999998 9999999996543 22345566665 999999999999998777654
Q ss_pred h---------cCC-CCcccccchhhHHHHH---HHHHHHHHhhhhcCCCCcEEEecccCCCccccCC-----CCCCCCCc
Q 039743 295 L---------KGV-IDPETKRKIIGKEFIC---IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP-----PPGTGRTH 356 (531)
Q Consensus 295 l---------~~~-~~p~~kr~~~~~~~~~---~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~-----~~g~g~~~ 356 (531)
+ .|. .||. +.||.+++ .++....++| +++|++||=+.-+.+-.. ...+
T Consensus 83 Vfs~~L~~Y~~G~TPNPD----I~CN~~IKFg~~~~~a~en~~------~d~latGHYAr~~~~~~~~~~~~l~~~---- 148 (377)
T KOG2805|consen 83 VFSPFLEEYENGRTPNPD----ILCNKHIKFGKFFKHAIENLG------YDWLATGHYARVVLEDEDNAESHLLIS---- 148 (377)
T ss_pred HHHHHHHHHhcCCCCCCC----ccccceeeccHHHHHHHHhcC------CCeEEeeeeeeeecCcccCcceeEeec----
Confidence 3 232 3565 66777554 4444444555 899999983222211100 0011
Q ss_pred ccccccc-cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCc
Q 039743 357 SHTIKSH-HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGL 413 (531)
Q Consensus 357 ~~~ikt~-~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~l 413 (531)
.+..|.+ +.+..+....--+.+-||..+.|+||+++|++.|+| +..+..+.|-|.
T Consensus 149 ~d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~--~aeK~eSqGICF 204 (377)
T KOG2805|consen 149 KDMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFP--NAEKPESQGICF 204 (377)
T ss_pred ccccCCceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCc--cccCcccceeEE
Confidence 1111211 223344333333578999999999999999999999 355555556554
No 126
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.69 E-value=1.6e-16 Score=164.00 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=113.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhhc------
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKLK------ 296 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l~------ 296 (531)
.++|+||+|||+||+++++++++. |.+|+|+++|.|+....|.+.+.+ +|+.+|+ +|+++|+++.|.+..-
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~-G~~Viavt~d~gq~~~~El~~a~~-~A~~lG~~~~~viD~~eef~e~vi~p~i~a 79 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER-GYAVHTVFADTGGVDAEERDFIEK-RAAELGAASHVTVDGGPAIWEGFVKPLVWA 79 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc-CCcEEEEEEEeCCCCHHHHHHHHH-HHHHcCCCeEEEecCHHHHHHHHHHHHHhc
Confidence 468999999999999999999885 999999999999988788888876 8999998 6999999988765431
Q ss_pred -----C-CCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEeccc--CCCccccCCCCCCCCCcccccccccccCC
Q 039743 297 -----G-VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTL--YPDVIESCPPPGTGRTHSHTIKSHHNVGG 368 (531)
Q Consensus 297 -----~-~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~--~~D~~es~~~~g~g~~~~~~ikt~~~~~~ 368 (531)
| ..+|...||++ .+.+.+.|++.| ++++++|++ .+|+.. ++| +
T Consensus 80 Na~y~G~yPl~~~nR~~~----~~~l~e~A~~~G------~~~IA~G~tgkgnDq~r----frp---------------g 130 (400)
T PRK04527 80 GEGYQGQYPLLVSDRYLI----VDAALKRAEELG------TRIIAHGCTGMGNDQVR----FDL---------------A 130 (400)
T ss_pred chhhcCCCCCccccHHHH----HHHHHHHHHHCC------CCEEEecCcCCCCchhh----ccH---------------H
Confidence 1 11232234443 245667788877 899999998 788765 444 3
Q ss_pred CCcccccceeccccc--C----CHHHHHHHHHHcCCCcc
Q 039743 369 LPKDMKLKLIEPLKL--L----FKDEVRQLGRILNVPEQ 401 (531)
Q Consensus 369 l~~~~~~~ii~PL~~--l----~K~eVr~la~~lglp~~ 401 (531)
+.+..++++++||++ + .++|..+||++.|+|..
T Consensus 131 ~~Al~el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 131 VKALGDYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHHhhcCCccchHHHhcCcccccHHHHHHHHHHcCCCCC
Confidence 444447789999999 5 45666799999999964
No 127
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.68 E-value=2.2e-16 Score=167.74 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=113.6
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHH----hCCcEEEEEEeCCCCChh-HHHHHHHHHHHhCCCcEEEEECch
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKA----IGDRLHCVFVDNGLLRYK-ERERVMDTFEKDLHLPVTCVDATD 289 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~----~g~~v~~v~id~g~~~~~-e~~~~~~~la~~lgi~~~vvd~~~ 289 (531)
..+++.+.+.++++||+|||+||+++++++.+. .|.+++++|+|||+.... +.++..+.+|+.+||++++++++.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~ 85 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQL 85 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 344555666789999999999999999999753 267999999999997543 233444559999999999988753
Q ss_pred HHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCccccccccccc
Q 039743 290 QFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNV 366 (531)
Q Consensus 290 ~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~ 366 (531)
.. .+. +.+. .....+|..|.+.+++ .++|++|||.||.+||.. ..|.| ..++
T Consensus 86 ~~----~~~-~~e~---~AR~~Ry~~~~~~~~~--------~~~l~~aHh~DDq~ET~L~~L~rG~g---------~~gL 140 (436)
T PRK10660 86 DQ----RGL-GIEA---AARQARYQAFARTLLP--------GEVLVTAQHLDDQCETFLLALKRGSG---------PAGL 140 (436)
T ss_pred cC----CCC-CHHH---HHHHHHHHHHHHHHHh--------CCEEEEcCchHHHHHHHHHHHHcCCC---------hhhc
Confidence 21 111 1121 1113345555554432 358999999999999842 23332 1345
Q ss_pred CCCCcc---cccceecccccCCHHHHHHHHHHcCCCc
Q 039743 367 GGLPKD---MKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 367 ~~l~~~---~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
.||++. ....+++||.+++|+||.++++..|+|.
T Consensus 141 ~gm~~~~~~~~~~liRPLL~~~k~ei~~ya~~~~l~~ 177 (436)
T PRK10660 141 SAMAEVSPFAGTRLIRPLLARSREELEQYAQAHGLRW 177 (436)
T ss_pred cccceecccCCCcEeCCCccCCHHHHHHHHHHcCCCE
Confidence 566543 3467999999999999999999999995
No 128
>PRK14561 hypothetical protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=150.81 Aligned_cols=141 Identities=23% Similarity=0.254 Sum_probs=98.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhc----CCCCc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLK----GVIDP 301 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~----~~~~p 301 (531)
||+|++|||+||+++++++.+. .++.+++++.|+. .+.+.+.+ +|+.+|+++++++++..+..... ....|
T Consensus 2 kV~ValSGG~DSslll~~l~~~--~~v~a~t~~~g~~--~e~~~a~~-~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P 76 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF--YDVELVTVNFGVL--DSWKHARE-AAKALGFPHRVLELDREILEKAVDMIIEDGYP 76 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc--CCeEEEEEecCch--hHHHHHHH-HHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 6999999999999999988765 6789999999984 35566655 89999999999999875533221 11112
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceeccc
Q 039743 302 ETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPL 381 (531)
Q Consensus 302 ~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL 381 (531)
. ..+...++..+...+ .| ++++++|||.+|..|+. .+|| ++ ++.....+++++||
T Consensus 77 ~---~~~~~l~~~~l~~~a--~g------~~~Ia~G~n~DD~~et~--~r~~------~~------a~~~~~gi~iirPL 131 (194)
T PRK14561 77 N---NAIQYVHEHALEALA--EE------YDVIADGTRRDDRVPKL--SRSE------IQ------SLEDRKGVQYIRPL 131 (194)
T ss_pred C---chhHHHHHHHHHHHH--cC------CCEEEEEecCCCcchhc--cHHH------Hh------hhhcCCCcEEEeeC
Confidence 2 122222333444433 55 78999999999987742 2331 12 22222234689999
Q ss_pred ccCCHHHHHHHHHHc
Q 039743 382 KLLFKDEVRQLGRIL 396 (531)
Q Consensus 382 ~~l~K~eVr~la~~l 396 (531)
..++|.|||++++++
T Consensus 132 ~~~~K~eI~~la~~l 146 (194)
T PRK14561 132 LGFGRKTIDRLVERL 146 (194)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999987
No 129
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.67 E-value=3.2e-16 Score=162.50 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=111.6
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHH-----hhcCCCC
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLS-----KLKGVID 300 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~-----~l~~~~~ 300 (531)
|++|+|||+||+++++++++..+.+|+|+|+|+|+.. ++.+.+++ +|+.+|++ ++++|+++.|.+ .+.. +
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~-~~~e~a~~-~a~~lG~~~~~viD~~~ef~~~~i~~~i~a--n 76 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEE-KALKLGAKKHVVVDLREEFVEDYIFPAIQA--N 76 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc-hhHHHHHH-HHHHcCCCEEEEeccHHHHHHHhhHHHHHh--C
Confidence 6899999999999999999986679999999999743 33355554 89999996 999999887753 2221 2
Q ss_pred ccccc-c----hhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 301 PETKR-K----IIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 301 p~~kr-~----~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
....+ + .+|+. +.+.+.+.|++.| ++++++|++.. |... ..+ ++...
T Consensus 77 ~~~~g~y~l~t~l~R~~i~~~l~~~A~~~G------a~~VA~G~t~~gnDq~r----f~~---------------~~~al 131 (385)
T cd01999 77 ALYEGTYPLGTALARPLIAKALVEVAKEEG------ADAVAHGCTGKGNDQVR----FEL---------------AFYAL 131 (385)
T ss_pred ccccCCCcCCcHhHHHHHHHHHHHHHHHcC------CCEEEeCCCCCCCcHHH----HHH---------------HHHhh
Confidence 22222 1 22444 4567778888887 89999999853 5432 111 12222
Q ss_pred -cccceecccccC---CHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 -MKLKLIEPLKLL---FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 -~~~~ii~PL~~l---~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+++++.|++++ +|+|++++|+++|||.....+.||+
T Consensus 132 ~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~~~~pyS 172 (385)
T cd01999 132 NPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPYS 172 (385)
T ss_pred CCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCcccCCCCCc
Confidence 257899999998 9999999999999997544456766
No 130
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.66 E-value=4.4e-16 Score=161.92 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=113.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhh--cCCCCcc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKL--KGVIDPE 302 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l--~~~~~p~ 302 (531)
||++|+|||+||+++++++++. |.+|+|+|+|+|+. ..|.+.+.+ +|+.+|+ +++++|+++.|.+.. ..+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~-g~~V~av~id~Gq~-~~e~~~a~~-~a~~lGi~~~~viD~~~ef~~~~~~~~i~--- 74 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK-GYEVIAYTADVGQP-EEDIDAIPE-KALEYGAENHYTIDAREEFVKDYGFAAIQ--- 74 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc-CCEEEEEEEecCCC-hHHHHHHHH-HHHHhCCCeEEEEeCHHHHHHhhchhhhc---
Confidence 6899999999999999999987 99999999999964 567777765 8999998 899999998875541 1111
Q ss_pred cccchhhH----------HHHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCC
Q 039743 303 TKRKIIGK----------EFICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLP 370 (531)
Q Consensus 303 ~kr~~~~~----------~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~ 370 (531)
..+++.|+ .+++.+.++|++.| ++.+++|++.. |... +.+++ ..
T Consensus 75 ~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G------~~~Ia~G~t~~gnDqvr---f~r~~---------------~~ 130 (394)
T TIGR00032 75 ANAFYEGTYPLSTALARPLIAKKLVEAAKKEG------ANAVAHGCTGKGNDQER---FERSI---------------RL 130 (394)
T ss_pred CCccccCcccccchhhHHHHHHHHHHHHHHcC------CCEEEECccCCcchHHH---HHHHH---------------HH
Confidence 12233332 35566788888887 89999999764 5432 22221 11
Q ss_pred cccccceeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 371 KDMKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 371 ~~~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
...++++++||++ ++|+|++++++++|+|..+....|++
T Consensus 131 ~~~~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~~~~pys 171 (394)
T TIGR00032 131 LNPDLKVIAPWRDLNFTREEEIEYAIQCGIPYPMSKEKPYS 171 (394)
T ss_pred hCCCCeEECchhhcCCCHHHHHHHHHHcCCCeeEecCCCCc
Confidence 1225679999966 99999999999999997554445553
No 131
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.65 E-value=4.7e-16 Score=173.86 Aligned_cols=200 Identities=19% Similarity=0.131 Sum_probs=144.3
Q ss_pred hhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHH---hC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 039743 209 VLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKA---IG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHL 280 (531)
Q Consensus 209 ~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~---~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi 280 (531)
..+.++..+++++.. .++++|++|||+||+++++++.++ +| .++++|+++.-..++...+.+.+ +|+.||+
T Consensus 344 ~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~-la~~LGi 422 (679)
T PRK02628 344 AYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVA-LMKALGV 422 (679)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHH-HHHHhCC
Confidence 344555666666532 579999999999999999999998 45 79999999644344445556655 9999999
Q ss_pred cEEEEECchHHHHhhcCCCCc-------c--cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCC
Q 039743 281 PVTCVDATDQFLSKLKGVIDP-------E--TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPG 351 (531)
Q Consensus 281 ~~~vvd~~~~f~~~l~~~~~p-------~--~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g 351 (531)
+++++++++.+...+..+..+ + ....++++.+..+++.+|.+.| +..|.+| |..|. ..|
T Consensus 423 ~~~~i~I~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g------~lvl~Tg----n~sE~--~~G 490 (679)
T PRK02628 423 TAREIDIRPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHG------GIVIGTG----DLSEL--ALG 490 (679)
T ss_pred eEEEEEcHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcC------cEEEcCC----chhhH--HhC
Confidence 999999987653333222211 1 1124577777778888888877 5555555 45553 234
Q ss_pred CCCCccccccccc-ccCCCCcccccceecccccCCHHHHHHHHHHc-----------CCCccccccCCCCCCCccccccC
Q 039743 352 TGRTHSHTIKSHH-NVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL-----------NVPEQFLKRHPFPGPGLAVRVLG 419 (531)
Q Consensus 352 ~g~~~~~~ikt~~-~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~l-----------glp~~~~~~~P~~~p~la~r~~g 419 (531)
+ .|++ |+++- .+.|+.+++|.+|+++++.+ ++|++++.+.|+++ -.++
T Consensus 491 y--------~T~~~GD~~~-------~~~~~~~l~Kt~v~~l~~~~~~~~~~~~~~~~ip~~i~~~~psae-----L~p~ 550 (679)
T PRK02628 491 W--------CTYGVGDHMS-------HYNVNASVPKTLIQHLIRWVIASGQFDEAVSEVLLDILDTEISPE-----LVPA 550 (679)
T ss_pred c--------eecCCCCccc-------ccccccCCcHHHHHHHHHHHHhhccccccchhhHHHHhcCCCCcc-----ccCC
Confidence 4 5667 66544 78999999999999999998 58888998888765 2356
Q ss_pred -------CCCcchHHHHHhhhhHHHHHHHH
Q 039743 420 -------DVTEGNSLDILRQVDEIFIQSIK 442 (531)
Q Consensus 420 -------~vt~~~l~~~~~~~d~~~~~~l~ 442 (531)
+.|++.+ -.+...|.++...++
T Consensus 551 ~~~g~~~q~ded~l-gpY~~~D~~l~~~~~ 579 (679)
T PRK02628 551 DKEGEIVQSTEDII-GPYELQDFFLYYFLR 579 (679)
T ss_pred CCCCCCCCcchhcc-CCHHHHHHHHHHHHh
Confidence 6788888 478888888766554
No 132
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.64 E-value=3.2e-16 Score=150.18 Aligned_cols=167 Identities=23% Similarity=0.245 Sum_probs=97.4
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHH---HHhh--c--C
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQF---LSKL--K--G 297 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f---~~~l--~--~ 297 (531)
|++|+||||+||+++++++.+. |++++++++|+|+....|.+.+++ +|+.+|+ +|+++|++... .+.+ . .
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~-~~~v~al~~~YGq~~~~El~~a~~-i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~ 78 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE-GYEVYALTFDYGQRHRRELEAAKK-IAKKLGVKEHEVIDLSFLKEIGGSALTDDSIE 78 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH--SEEEEEEEESSSTTCHHHHHHHH-HHHHCT-SEEEEEE-CHHHHCSCHHHHHTT--
T ss_pred CEEEEeCCCHHHHHHHHHHHHc-CCeEEEEEEECCCCCHHHHHHHHH-HHHHhCCCCCEEeeHHHHHhhCCCcccCCCcC
Confidence 6899999999999999999887 899999999999998888888876 9999999 99999998211 0111 0 1
Q ss_pred CCCcccccch-------hhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCC
Q 039743 298 VIDPETKRKI-------IGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGL 369 (531)
Q Consensus 298 ~~~p~~kr~~-------~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l 369 (531)
+..++..... ..|. |..+...+|...| ++.|+.|.+.+|.... +..++ ++++....+-..
T Consensus 79 v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g------~~~i~~G~~~~D~~~y-pDc~~-----~F~~~~~~~~~~ 146 (209)
T PF06508_consen 79 VPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLG------AEAIYIGVNAEDASGY-PDCRP-----EFIDAMNRLLNL 146 (209)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHT-------SEEEE---S-STT---GGGSH-----HHHHHHHHHHHH
T ss_pred CcccccccCCCCceEEecCcHHHHHHHHHHHHHCC------CCEEEEEECcCccCCC-CCChH-----HHHHHHHHHHHh
Confidence 1110000001 1111 3345555666665 8999999999884211 11222 333332211111
Q ss_pred CcccccceecccccCCHHHHHHHHHHcCCCccccccC
Q 039743 370 PKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRH 406 (531)
Q Consensus 370 ~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~ 406 (531)
.....+++..|+.+++|.||.+++.++|.|.+..|.-
T Consensus 147 ~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~~T~SC 183 (209)
T PF06508_consen 147 GEGGPVRIETPLIDLTKAEIVKLGVELGVPLELTWSC 183 (209)
T ss_dssp HHTS--EEE-TTTT--HHHHHHHHHHTTHHHHH-B-S
T ss_pred cCCCCEEEEecCCCCCHHHHHHHHHHcCCCHHHccCC
Confidence 1224678999999999999999999999887766654
No 133
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.63 E-value=3.4e-15 Score=138.24 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=113.6
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCC--cEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHH----hhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGD--RLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLS----KLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~--~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~----~l~~~~ 299 (531)
+++|++|||+||+|+++++.++... ++.++|+|+|...++..+.+.+ +++.+|+++++++....+.. ...+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDR-VAERYGLPLVVVRPPDSPAEGLALGLKGFP 79 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHH-HHHHhCCCeEEECCCccHHHHHHHhhhccC
Confidence 5899999999999999999998543 8999999999976655555554 89999999999988754321 011111
Q ss_pred CcccccchhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 300 DPETKRKIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 300 ~p~~kr~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
.+....+.||.. ....+.+.+++.+ .+.+++|++.+|..++.... . . .+.....+...+
T Consensus 80 ~~~~~~~~c~~~~K~~~~~~~~~~~~------~~~~~~G~r~de~~~r~~~~--------~-~-----~~~~~~~~~~~~ 139 (173)
T cd01713 80 LPSPDRRWCCRILKVEPLRRALKELG------VVAWITGIRRDESARRALLP--------V-V-----WTDDGKGGILKV 139 (173)
T ss_pred CccccHHHhhccccchHHHHHHHhcC------CeEEEEEeccccchhhhhCc--------c-c-----cccCCCCCcEEE
Confidence 232233344444 3446666676655 78999999999987743210 0 0 012222355799
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPF 408 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~ 408 (531)
+||.+++++||++++++.|+|..-++++-+
T Consensus 140 ~Pl~~w~~~di~~~~~~~~l~~~~ly~~g~ 169 (173)
T cd01713 140 NPLLDWTYEDVWAYLARHGLPYNPLYDQGY 169 (173)
T ss_pred cchhcCCHHHHHHHHHHcCCCCCHHHHcCC
Confidence 999999999999999999999655555443
No 134
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.63 E-value=9.2e-16 Score=149.69 Aligned_cols=177 Identities=24% Similarity=0.361 Sum_probs=126.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCC--CCC-CCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV--HSP-DAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~--~~~-~~~~~~~~l~~~~~~~~i 82 (531)
+.+-+||+|+++.+++-++||.+|+.+..+....+ + .+.|-+|+||-..-. .|. ....+.. -++...+.++
T Consensus 2 ~vv~~ld~~agn~~si~nal~hlg~~i~~v~~P~D---I--~~a~rLIfPGVGnfg~~~D~L~~~Gf~e-plr~Yiesgk 75 (541)
T KOG0623|consen 2 SVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGD---I--LNADRLIFPGVGNFGPAMDVLNRTGFAE-PLRKYIESGK 75 (541)
T ss_pred ceEEEEecCCccHHHHHHHHHhcCceeeeccCchh---h--ccCceEeecCcccchHHHHHHhhhhhHH-HHHHHHhcCC
Confidence 34678999999999999999999998876643322 3 456899999954311 111 1122333 3455567799
Q ss_pred cEEEeeHHHHHHHHH------------cCCEEeec-----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 83 YVLGICYGLQLMVQK------------LDGVVKVG-----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 83 PvLGIC~G~Qlla~~------------~GG~v~~~-----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|++|||.|.|+|..- +.|.|.+. ..++.||....+..++.+|...+.. ++|+.|++...+
T Consensus 76 PfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~~---~~YFVHSyl~~e 152 (541)
T KOG0623|consen 76 PFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPNR---HVYFVHSYLNRE 152 (541)
T ss_pred CeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCCc---eEEEEeeecccc
Confidence 999999999998752 23444443 3578999999888777777766654 899999985533
Q ss_pred ----C-CCCcEEEEEeCCC---cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhee
Q 039743 146 ----L-PDGFEVVARSQQG---AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLF 195 (531)
Q Consensus 146 ----l-p~g~~vla~s~~~---~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~ 195 (531)
+ +++|++ |....+ .+.|+. .++++++|||||.+. +.|...+++|+.
T Consensus 153 k~~~len~~wki-at~kYG~E~Fi~ai~--knN~~AtQFHPEKSG-~aGL~vl~~FL~ 206 (541)
T KOG0623|consen 153 KPKSLENKDWKI-ATCKYGSESFISAIR--KNNVHATQFHPEKSG-EAGLSVLRRFLH 206 (541)
T ss_pred cccCCCCCCceE-eeeccCcHHHHHHHh--cCceeeEeccccccc-chhHHHHHHHHh
Confidence 3 346775 444433 567765 478999999999987 789999999994
No 135
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.62 E-value=3.5e-15 Score=141.12 Aligned_cols=166 Identities=24% Similarity=0.311 Sum_probs=115.0
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcC--CCCc
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKG--VIDP 301 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~--~~~p 301 (531)
.+|++|.||||.||+++++++.+. +++|+++++|+|+....|.+.+++ +|+.||+++++||++-. ..+.+ ++++
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~-~~ev~alsfdYGQrh~~Ele~A~~-iak~lgv~~~iid~~~~--~~~~~saLtd~ 77 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKE-GYEVHALTFDYGQRHRKELEAAKE-LAKKLGVPHHIIDVDLL--GEIGGSALTDD 77 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhc-CCEEEEEEeeCCCCcHHHHHHHHH-HHHHcCCCeEEechhHH--hhcCCCcCcCC
Confidence 468999999999999999999998 899999999999999888888876 99999999999999632 22321 2221
Q ss_pred -----ccc-------c--chhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccccc
Q 039743 302 -----ETK-------R--KIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNV 366 (531)
Q Consensus 302 -----~~k-------r--~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~ 366 (531)
... . --..|. |..+...+|..+| ++.|+.|-+..|.... +..+| ..|+.....
T Consensus 78 ~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g------~~~I~~Gv~~~D~sgY-PDcrp-----efi~a~~~~ 145 (222)
T COG0603 78 SIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALG------ADAIIIGVNEEDFSGY-PDCRP-----EFIEALNEA 145 (222)
T ss_pred CccccccccccccCcceEeccccHHHHHHHHHHHHHcC------CCeEEEEecccccCCC-CCCCH-----HHHHHHHHH
Confidence 111 0 001111 3333344454444 8999999988876321 23344 344443222
Q ss_pred CCCCcccccc-eecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 367 GGLPKDMKLK-LIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 367 ~~l~~~~~~~-ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
-.+.....++ +..||.+++|.|+.++|.++|.|.+..|.
T Consensus 146 ~~l~~~~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~S 185 (222)
T COG0603 146 LNLGTEKGVRIIHAPLMELTKAEIVKLADELGVPLELTWS 185 (222)
T ss_pred HHhhccCCccEEeCCeeeccHHHHHHHHHHhCCcchhceE
Confidence 2222223344 69999999999999999999999877665
No 136
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.62 E-value=2.3e-15 Score=140.03 Aligned_cols=144 Identities=28% Similarity=0.314 Sum_probs=101.2
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCccccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKR 305 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr 305 (531)
|+++++|||+||+++++++++. |.+++++++|+|.....+.+.+.+ +|+.+| ++..++.. +
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~~~~~~~---------------~- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE-GYEVHALSFDYGQRHAKEEEAAKL-IAEKLG-PSTYVPAR---------------N- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc-CCcEEEEEEECCCCChhHHHHHHH-HHHHHC-CCEEEeCc---------------C-
Confidence 6899999999999999999987 889999999999765556655554 888888 33333211 0
Q ss_pred chhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCC
Q 039743 306 KIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLF 385 (531)
Q Consensus 306 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~ 385 (531)
..+...+.+.|.+.| ++.|++||+.+|..... ..+| ..+++...+..+.....+++++||.+++
T Consensus 62 ----~~~~~~l~~~a~~~g------~~~i~~G~~~~d~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~PL~~~~ 125 (169)
T cd01995 62 ----LIFLSIAAAYAEALG------AEAIIIGVNAEDYSGYP-DCRP-----EFIEAMNKALNLGTENGIKIHAPLIDLS 125 (169)
T ss_pred ----HHHHHHHHHHHHHCC------CCEEEEeeccCccCCCC-CCCH-----HHHHHHHHHHHhhcCCCeEEEeCcccCC
Confidence 124456777788777 89999999999965311 0111 1122211111122334568999999999
Q ss_pred HHHHHHHHHHcCCCccccc
Q 039743 386 KDEVRQLGRILNVPEQFLK 404 (531)
Q Consensus 386 K~eVr~la~~lglp~~~~~ 404 (531)
|.||+++++++|+|....|
T Consensus 126 K~ei~~~~~~~g~~~~~s~ 144 (169)
T cd01995 126 KAEIVRLGGELGVPLELTW 144 (169)
T ss_pred HHHHHHHHhHcCCChhhee
Confidence 9999999999999864443
No 137
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.2e-14 Score=131.80 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=116.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCC-CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLS-ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G-~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~~~~~~~l~~~~~~~~i 82 (531)
++|.||-+.+... ...+.+++++ +++..+....++ .+.||+|||||.|+.... ....+...+ +...+.|+
T Consensus 1 m~IGVLalQG~v~-EH~~~l~~~~~~e~~~Vk~~~dL-----~~~d~LIiPGGESTTi~rL~~~~gl~e~l-~~~~~~G~ 73 (194)
T COG0311 1 MKIGVLALQGAVE-EHLEALEKAGGAEVVEVKRPEDL-----EGVDGLIIPGGESTTIGRLLKRYGLLEPL-REFIADGL 73 (194)
T ss_pred CeEEEEEecccHH-HHHHHHHhhcCCceEEEcCHHHh-----ccCcEEEecCccHHHHHHHHHHcCcHHHH-HHHHHcCC
Confidence 3699999877764 4678899985 777665443333 456999999999854322 112233334 44556699
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCC--c---------cccCCCCCceEEEEeeccCccccCCCCcE
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS--G---------IFGNKKVGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~--~---------l~~~~~~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
|+||.|.||-+|++..-+ ....+..|..++++.+|. + -++++.....+++.+.....+.++.++.+
T Consensus 74 Pv~GTCAGlIlLakei~~---~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~ 150 (194)
T COG0311 74 PVFGTCAGLILLAKEILD---GPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVE 150 (194)
T ss_pred ceEEechhhhhhhhhhcC---CCCCcccceEEEEEEccccccccccceeeEEeecccCCCcceEEEEEcceeehhcCcce
Confidence 999999999999975543 123345676777666442 1 12223222115667888888888888999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhh
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYF 193 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F 193 (531)
++|+-++..|++ ++++++++-||||.+.+..=+++|.++
T Consensus 151 vLa~l~~~iVav---~qgn~LatsFHPELT~D~r~Heyf~~~ 189 (194)
T COG0311 151 VLATLDGRIVAV---KQGNILATSFHPELTDDTRLHEYFLDM 189 (194)
T ss_pred EeeeeCCEEEEE---EeCCEEEEecCccccCCccHHHHHHHH
Confidence 999988755555 457999999999999875434444433
No 138
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.50 E-value=4.6e-13 Score=131.93 Aligned_cols=173 Identities=18% Similarity=0.310 Sum_probs=105.4
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCCCCCCCC-----------CCChHH
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHSVHSPDA-----------PAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s~~~~~~-----------~~~~~~ 72 (531)
+||+|+-| |+......+++++.+|++++++..+...+ +..+.++|+|+|+||.+.-....+ +.+..+
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~ 81 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA 81 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence 57888866 66668889999999999999987654221 223678999999999883111111 122334
Q ss_pred HHHHHHhC-CCcEEEeeHHHHHHHHH--cCC----------EEeecCcccc--eeeeEEEecCCc--cccCCCCCceEEE
Q 039743 73 FLEWALSN-GVYVLGICYGLQLMVQK--LDG----------VVKVGEKQEY--GRMEILVERSSG--IFGNKKVGHHQVV 135 (531)
Q Consensus 73 l~~~~~~~-~iPvLGIC~G~Qlla~~--~GG----------~v~~~~~~e~--G~~~v~~~~~~~--l~~~~~~~~~~~v 135 (531)
+ +.+.++ +.|+||||.|+|+|.++ +++ ++.++....| .|..+.+..+++ .++++. . +.+
T Consensus 82 i-~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~s~~~~~~~~~-~--~~l 157 (259)
T PF13507_consen 82 I-REFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNENSPSIFLRGLE-G--IVL 157 (259)
T ss_dssp H-HHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--SSTTCCCTTTT-C--EEE
T ss_pred H-HHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecCCcceecCCCC-E--EEE
Confidence 4 444555 99999999999999985 677 6776655544 455554434443 334443 3 788
Q ss_pred EeeccCccccC---------CCCcEEEEEe-C-------------C---CcEEEEEECCCcEEEEecCCCCCC
Q 039743 136 WMSHGDEAVVL---------PDGFEVVARS-Q-------------Q---GAVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 136 ~~~H~~~v~~l---------p~g~~vla~s-~-------------~---~~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
+..|++.-... -+.-.+.... + + ..||++.+++++++|++.|||+..
T Consensus 158 PiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~GrvlglMpHPEr~~ 230 (259)
T PF13507_consen 158 PIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGRVLGLMPHPERAF 230 (259)
T ss_dssp EEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSSEEEESSBCCGTT
T ss_pred EEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCCEEEEcCChHHhC
Confidence 88888653222 2333444332 2 2 359999999999999999999864
No 139
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.50 E-value=2.4e-13 Score=136.95 Aligned_cols=173 Identities=16% Similarity=0.075 Sum_probs=118.6
Q ss_pred hhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEE
Q 039743 209 VLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCV 285 (531)
Q Consensus 209 ~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vv 285 (531)
...+.+..|++.+...+++++++|||+||+|+++|+.+++. ..+.++|+|+|...++..+.+ +.+|+.+|++++++
T Consensus 12 le~esi~iLrea~~~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~-d~~a~~~gl~l~v~ 90 (301)
T PRK05253 12 LEAESIHILREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFR-DRRAKELGLELIVH 90 (301)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHH-HHHHHHhCCCEEEE
Confidence 33455666777766567999999999999999999999864 378999999998766544444 45899999999998
Q ss_pred ECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccc
Q 039743 286 DATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHH 364 (531)
Q Consensus 286 d~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~ 364 (531)
...+.. ..+...+....|.||+.+. .-+.+.+++.+ ++.+++|+..+|-..+.. ..+.++.
T Consensus 91 ~~~~~i---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g------~da~~~G~RrDE~~~Ra~---------e~~fs~r 152 (301)
T PRK05253 91 SNPEGI---ARGINPFRHGSAKHTNAMKTEGLKQALEKYG------FDAAFGGARRDEEKSRAK---------ERIFSFR 152 (301)
T ss_pred eChHHH---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcC------CCEEEeccccchhhhhcc---------Ccccccc
Confidence 776543 2233222233456776654 56677777776 899999999988543210 0011100
Q ss_pred ------ccCCC-C----------cccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 365 ------NVGGL-P----------KDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 365 ------~~~~l-~----------~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
..... | ..-..-.+.||.+++..||.+|.+..|||.
T Consensus 153 ~~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~ 205 (301)
T PRK05253 153 DEFGQWDPKNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPI 205 (301)
T ss_pred ccccccCccccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 00000 0 001123579999999999999999999995
No 140
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.49 E-value=2.8e-14 Score=131.06 Aligned_cols=167 Identities=20% Similarity=0.267 Sum_probs=103.1
Q ss_pred EEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCC-CcEEE
Q 039743 10 ILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNG-VYVLG 86 (531)
Q Consensus 10 IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~-iPvLG 86 (531)
||.+.+.+. ...+.|+++|.++..+....++ .+.||||||||.|++...- ...+...+ +.+.+.+ +||||
T Consensus 1 VLALQG~~~-EH~~~l~~lg~~~~~Vr~~~dL-----~~~dgLIiPGGESTti~~ll~~~gL~~~l-~~~~~~g~~Pv~G 73 (188)
T PF01174_consen 1 VLALQGAFR-EHIRMLERLGAEVVEVRTPEDL-----EGLDGLIIPGGESTTIGKLLRRYGLFEPL-REFIRSGSKPVWG 73 (188)
T ss_dssp EESSSSSHH-HHHHHHHHTTSEEEEE-SGGGG-----TT-SEEEE-SS-HHHHHHHHHHTTHHHHH-HHHHHTT--EEEE
T ss_pred CCccccChH-HHHHHHHHcCCCeEEeCCHHHH-----ccCCEEEECCCcHHHHHHHHHHcCCHHHH-HHHHHcCCCceee
Confidence 345555553 5678999999988766543333 4569999999988543211 12223334 4444556 99999
Q ss_pred eeHHHHHHHHHcCCEEeecCcccceeeeEEEecCC-----------ccccCCCCCceEEEEeeccCccccCC--CCcEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS-----------GIFGNKKVGHHQVVWMSHGDEAVVLP--DGFEVV 153 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~-----------~l~~~~~~~~~~~v~~~H~~~v~~lp--~g~~vl 153 (531)
+|.||-+|++...+. .....|..++++.+|. .-+.++... +++.+.....|.++. ++.+++
T Consensus 74 TCAGlIlLa~~v~~~----~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~~~--~~avFIRAP~I~~v~~~~~v~vl 147 (188)
T PF01174_consen 74 TCAGLILLAKEVEGQ----GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLGEP--FPAVFIRAPVIEEVGSPEGVEVL 147 (188)
T ss_dssp ETHHHHHHEEEECSS----CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTESE--EEEEESS--EEEEE--TTTEEEE
T ss_pred hhHHHHHhhhhhhhc----ccccccceeEEEEccccccchhcEEEEEEeecCCCc--EEEEEcCCcEEEEeecccccccc
Confidence 999999999854433 3344677777766542 112233334 888888998888776 789999
Q ss_pred EEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 154 ARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 154 a~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|..++..| |++ +++++++-||||.+.+ +.++.+.|+
T Consensus 148 a~~~g~iV-av~--qgn~latsFHPELT~D--~~r~H~yFl 183 (188)
T PF01174_consen 148 AELDGKIV-AVR--QGNILATSFHPELTDD--DTRIHEYFL 183 (188)
T ss_dssp EEETTEEE-EEE--ETTEEEESS-GGGSST--HCHHHHHHH
T ss_pred cccccceE-EEE--ecCEEEEEeCCcccCc--hhHHHHHHH
Confidence 98886544 444 5899999999999864 345666665
No 141
>PRK08576 hypothetical protein; Provisional
Probab=99.44 E-value=7.5e-13 Score=138.99 Aligned_cols=171 Identities=21% Similarity=0.194 Sum_probs=113.0
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHH
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLS 293 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~ 293 (531)
.+.++++ + .++++|++|||+||+++++++.++.+ ++.++|+|+|...+...+.+. .+|+.+|+++++.+.+...
T Consensus 226 ~~~Lr~~-~-~~rVvVafSGGKDStvLL~La~k~~~-~V~aV~iDTG~e~pet~e~~~-~lae~LGI~lii~~v~~~~-- 299 (438)
T PRK08576 226 IKFLRKF-E-EWTVIVPWSGGKDSTAALLLAKKAFG-DVTAVYVDTGYEMPLTDEYVE-KVAEKLGVDLIRAGVDVPM-- 299 (438)
T ss_pred HHHHHHc-C-CCCEEEEEcChHHHHHHHHHHHHhCC-CCEEEEeCCCCCChHHHHHHH-HHHHHcCCCEEEcccCHHH--
Confidence 3344443 2 34899999999999999999999866 599999999987665555554 4899999999884443221
Q ss_pred hhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 294 KLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 294 ~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
...+...|...+..|+....+.+.+.+++++ .+.+++|+. +|...+.. ..| .....+.+. .
T Consensus 300 ~~~~~g~p~~~~rcCt~lK~~pL~raake~g------~~~iatG~R-~dES~~R~-~~p-----~v~~~~~~~------~ 360 (438)
T PRK08576 300 PIEKYGMPTHSNRWCTKLKVEALEEAIRELE------DGLLVVGDR-DGESARRR-LRP-----PVVERKTNF------G 360 (438)
T ss_pred HhhhcCCCCcccchhhHHHHHHHHHHHHhCC------CCEEEEEee-HHHhHHhh-cCC-----cccccccCC------C
Confidence 1223333443333455445567788888777 789999985 33221110 111 000111111 1
Q ss_pred ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
....++||.+++.+||..+.+..|||..-++..-|+
T Consensus 361 ~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY~~Gy~ 396 (438)
T PRK08576 361 KILVVMPIKFWSGAMVQLYILMNGLELNPLYYKGFY 396 (438)
T ss_pred CeEEEeChhhCCHHHHHHHHHHhCCCCCcHHhCCCC
Confidence 245899999999999999999999997666665554
No 142
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.37 E-value=1.6e-12 Score=110.75 Aligned_cols=103 Identities=27% Similarity=0.329 Sum_probs=80.8
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccc
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRK 306 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~ 306 (531)
++|++|||+||+++++++.+. +.++.++|+|+|+.. +.+.+.+ +|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~-~~~~~~~~~~~~~~~--~~~~~~~-~~~~----------------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL-GYQVIAVTVDHGISP--RLEDAKE-IAKE----------------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh-CCCEEEEEEcCCCcc--cHHHHHH-HHHH-----------------------------
Confidence 589999999999999999997 668999999999875 4445544 5555
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccc
Q 039743 307 IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLK 382 (531)
Q Consensus 307 ~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~ 382 (531)
.+++.+.+.|++.| ++++++||+++|..|+. + . .+.++|+.+.......++++|+.
T Consensus 48 ----~r~~~~~~~a~~~g------~~~i~~g~~~~D~~~~~----~----~--~~~~~~~~~~~~~~~~~~~~Pl~ 103 (103)
T cd01986 48 ----AREEAAKRIAKEKG------AETIATGTRRDDVANRA----L----G--LTALLNLTVTLSGAGIQSLEPLI 103 (103)
T ss_pred ----HHHHHHHHHHHHcC------CCEEEEcCCcchHHHHH----H----H--HHHHhcCCCCcccCcceEeecCC
Confidence 45567778888877 89999999999999853 2 1 12267777777777888999974
No 143
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.35 E-value=2.3e-11 Score=140.96 Aligned_cols=189 Identities=17% Similarity=0.214 Sum_probs=121.9
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCCh--------hcc--ccCCCCEEEEcCCCCCC--CCCCCCC----
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSL--------DDI--TAKNPRVVILSGGPHSV--HSPDAPA---- 68 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~--------~~~--~~~~~dgiIlsGGp~s~--~~~~~~~---- 68 (531)
++|+|+-| |+......+++++++|+.++++..+.-. +.+ ...++++|+++||.+.- .+...-|
T Consensus 978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857 978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence 68999977 5555777999999999998887754311 111 14789999999999831 1111001
Q ss_pred ----ChHHHHHHHHhCCCcEEEeeHHHHHHHHH--cC-C----------EEeecCcccc--eeeeEEEec-CCccccCCC
Q 039743 69 ----FPAGFLEWALSNGVYVLGICYGLQLMVQK--LD-G----------VVKVGEKQEY--GRMEILVER-SSGIFGNKK 128 (531)
Q Consensus 69 ----~~~~l~~~~~~~~iPvLGIC~G~Qlla~~--~G-G----------~v~~~~~~e~--G~~~v~~~~-~~~l~~~~~ 128 (531)
-..+-++.+.+++.|+||||.|||+|.+. +. | +..++....| .|..+++.. .+++++++.
T Consensus 1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~~~s~~~~~~~ 1137 (1239)
T TIGR01857 1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIASTNSPWLSGVS 1137 (1239)
T ss_pred hhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECCCCChhHhcCC
Confidence 01223334446899999999999999985 21 2 3333433333 455555543 468888887
Q ss_pred CCceEEEEeeccCccccCCC---------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCCC
Q 039743 129 VGHHQVVWMSHGDEAVVLPD---------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 129 ~~~~~~v~~~H~~~v~~lp~---------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
....+.++.+|+..-...++ |..++-. +++| .|+++.+++++++|++.||||...
T Consensus 1138 ~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dGrvlg~MpHpER~~~ 1217 (1239)
T TIGR01857 1138 VGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGRIFGKMGHSERYGD 1217 (1239)
T ss_pred CCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCCCEEEECCCcccccC
Confidence 44458999999976432221 2222211 3444 488999999999999999998642
Q ss_pred c--------ccchhhhhhe
Q 039743 184 P--------EGMETLRYFL 194 (531)
Q Consensus 184 ~--------~g~~i~~~F~ 194 (531)
. .|..||++.+
T Consensus 1218 ~~~~~~~g~~~~~iF~~~v 1236 (1239)
T TIGR01857 1218 GLFKNIPGNKDQHLFASGV 1236 (1239)
T ss_pred cccCCCCchhhhHHHHHHH
Confidence 1 3467777765
No 144
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.34 E-value=3.9e-12 Score=116.41 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=78.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch--HHHHhhcCCC-Ccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD--QFLSKLKGVI-DPE 302 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~--~f~~~l~~~~-~p~ 302 (531)
.++|++|||+||+++++++++..+.++.++++|+|+.++.+.+.+.+ +|+. |+++..+.++. ........+. +..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~-~a~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKN-LIKK-GLDLDHLVINPEEMKDLQLARFKAKVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHH-HHHh-CCCeEEEecCHHHHHHHHHHHHhcccC
Confidence 48999999999999999999885568999999999976666667665 8898 77765555442 2111111110 112
Q ss_pred cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 303 TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 303 ~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
..+..+...++..+.+.|++.| ++.+++|++.++..
T Consensus 81 ~p~~~~~~~~~~~~~~~A~~~g------~~~il~G~~~de~~ 116 (154)
T cd01996 81 DPCWPCDTAIFTSLYKVALKFG------IPLIITGENPAQEF 116 (154)
T ss_pred CCChhhhHHHHHHHHHHHHHhC------cCEEEeCcCHHHhc
Confidence 2233444556678888898887 89999999988764
No 145
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.33 E-value=9.9e-12 Score=139.07 Aligned_cols=199 Identities=21% Similarity=0.219 Sum_probs=127.1
Q ss_pred hhhhhhhhccccC--ccceeeccCCCCCHHHHHHHH-------HHHh--CC-c---------------------------
Q 039743 211 DEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLV-------HKAI--GD-R--------------------------- 251 (531)
Q Consensus 211 ~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~-------~k~~--g~-~--------------------------- 251 (531)
....-.|++++.+ .+++++++|||+||+++|+++ .+++ |. +
T Consensus 333 ~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (700)
T PLN02339 333 LGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRI 412 (700)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcce
Confidence 3344556666543 468999999999999988885 6777 42 1
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch---HHHHhhcCCC--Cc----------c--cccchhhHHHHH
Q 039743 252 LHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD---QFLSKLKGVI--DP----------E--TKRKIIGKEFIC 314 (531)
Q Consensus 252 v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~---~f~~~l~~~~--~p----------~--~kr~~~~~~~~~ 314 (531)
++++++++-..++...++|.+ +|+.+|++++.+++++ .+.+.++... +| + ....+-.+.+..
T Consensus 413 ~~~v~mp~~~ss~~t~~~A~~-la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~d~~~~NiQAR~R~~ 491 (700)
T PLN02339 413 FYTVYMGSENSSEETRSRAKQ-LADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLALQNIQARIRMV 491 (700)
T ss_pred eEEEECCCCCCCHHHHHHHHH-HHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcccchhhhcccHHHHHH
Confidence 689999876666666666665 9999999999999994 3433332210 11 1 111223333444
Q ss_pred HHHHHHHHhhhhcCCCCc-EEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHH-
Q 039743 315 IFDAFAHDLEQKLGKKPA-YLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQL- 392 (531)
Q Consensus 315 ~~~~~a~~~g~~~~~~~~-~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~l- 392 (531)
+++.+|...+.. .+... .|+.||.. ..| ...|+ .|.+++++- .+.|+.+++|.+||++
T Consensus 492 ~l~~~A~l~~~~-~~~~g~~LvlgTgN--~sE--~~~Gy--------~T~ygd~~~-------~~~pi~~l~Kt~v~~l~ 551 (700)
T PLN02339 492 LAFMLASLLPWV-RGKSGFLLVLGSAN--VDE--GLRGY--------LTKYDCSSA-------DINPIGGISKQDLRSFL 551 (700)
T ss_pred HHHHHHhhcchh-hccCCceEEEcCCC--cch--hheee--------eeecCCCCc-------CccccCCCcHHHHHHHH
Confidence 556666544311 12233 48888843 334 22454 566666554 7899999999999999
Q ss_pred ---HHHcCCC--ccccccCCCCCCCccccc----cCCCCcchHHHHHhhhh
Q 039743 393 ---GRILNVP--EQFLKRHPFPGPGLAVRV----LGDVTEGNSLDILRQVD 434 (531)
Q Consensus 393 ---a~~lglp--~~~~~~~P~~~p~la~r~----~g~vt~~~l~~~~~~~d 434 (531)
++.++.| .+++.+.|+|+ | +. .++.|++.+|-.+++.+
T Consensus 552 ~~~~~~~~~~il~~i~~~~pSaE--L--~p~~~~~~Q~dE~~lG~~Y~~l~ 598 (700)
T PLN02339 552 RWAATNLGYPSLAEVEAAPPTAE--L--EPIRDDYSQTDEEDMGMTYEELG 598 (700)
T ss_pred HHHHHhcCCCcHHHHhcCCCCcc--c--ccCCCCCCCCCHHHHCcCHHHHH
Confidence 6667777 78888877765 3 33 25667776643455443
No 146
>PRK05370 argininosuccinate synthase; Validated
Probab=99.33 E-value=1.4e-11 Score=127.53 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=115.3
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhh----
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKL---- 295 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l---- 295 (531)
+...+||++|+|||.||+|++.++++- |.+|+|+++|.|+...++.+.+.+ -|..+|. +++++|+.+.|.+..
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~-kA~~~GA~~~~viDlr~eF~e~~i~aI 85 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPR-RAMEYGAENARLIDCRAQLVAEGIAAI 85 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHH-HHHHhCCCEEEEeccHHHHHHHHHHHH
Confidence 333789999999999999999999987 999999999999743345556555 4678898 799999998876442
Q ss_pred cCCCC---cccccch----hhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccC
Q 039743 296 KGVID---PETKRKI----IGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 296 ~~~~~---p~~kr~~----~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~ 367 (531)
..-.- .++.++. +.+.+ .+.+.++|++.| ++.+++|.. |.| ++.++......
T Consensus 86 ~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~g------a~aIAHG~T-----------GKG---NDQvRFE~~~~ 145 (447)
T PRK05370 86 QCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDG------VNIWGDGST-----------YKG---NDIERFYRYGL 145 (447)
T ss_pred HcCCccccccCccccCCCcchHHHHHHHHHHHHHHhC------CcEEEEcCC-----------CCC---CchHHHHHHHH
Confidence 21110 0011222 22332 245677788888 899999973 333 45555433332
Q ss_pred CCCcccccceeccccc--C-----CHHHHHHHHHHcCCCccccccCCCC
Q 039743 368 GLPKDMKLKLIEPLKL--L-----FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~--l-----~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+.+ .++++.|+++ + +++|-.+|+++.|+|.......|++
T Consensus 146 aL~P--~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~~~~~yS 192 (447)
T PRK05370 146 LTNP--ELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMSVEKAYS 192 (447)
T ss_pred HhCC--CCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCccCCCCcc
Confidence 3322 5679999999 4 7999999999999997555555665
No 147
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.32 E-value=1.4e-12 Score=122.22 Aligned_cols=168 Identities=18% Similarity=0.179 Sum_probs=106.3
Q ss_pred CCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC-----CCcE
Q 039743 13 YGSQY-THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN-----GVYV 84 (531)
Q Consensus 13 ~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~-----~iPv 84 (531)
+|..| ..++++.++..|+++..+.++.+.+.+. +.-.+|||++||-.- ..+.....+.+++..+++ ..||
T Consensus 73 t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak--~~dY~~vvkkifnk~le~nDaGehFPv 150 (340)
T KOG1559|consen 73 TGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAK--RGDYFEVVKKIFNKVLERNDAGEHFPV 150 (340)
T ss_pred cCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccc--cccHHHHHHHHHHHHHhccCCccccch
Confidence 44444 5678999999999999988888766542 556899999999431 111223345677776663 3899
Q ss_pred EEeeHHHHHHHHHcC-C-EE-eecCcccceeeeEEEec----CCccccCCCCC------ceEEEEeeccCccc-------
Q 039743 85 LGICYGLQLMVQKLD-G-VV-KVGEKQEYGRMEILVER----SSGIFGNKKVG------HHQVVWMSHGDEAV------- 144 (531)
Q Consensus 85 LGIC~G~Qlla~~~G-G-~v-~~~~~~e~G~~~v~~~~----~~~l~~~~~~~------~~~~v~~~H~~~v~------- 144 (531)
.|||+|+.+|..... + .+ ++.+.. .-...++... .+.+|+.+|.+ ..--+...|.+.+.
T Consensus 151 yg~CLGFE~lsmiISqnrdile~~d~v-d~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N 229 (340)
T KOG1559|consen 151 YGICLGFELLSMIISQNRDILERFDAV-DVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGN 229 (340)
T ss_pred hhhhhhHHHHHHHHhcChhHHHhhccc-ccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCC
Confidence 999999999987543 1 11 111111 1112222222 23455555432 00346778988763
Q ss_pred -cCCCCcEEEEEeCCC----cEEEEEECCCcEEEEecCCCCCCC
Q 039743 145 -VLPDGFEVVARSQQG----AVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 145 -~lp~g~~vla~s~~~----~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
.|..-|.++.++.|+ .|..++....|++|+|||||....
T Consensus 230 ~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnaf 273 (340)
T KOG1559|consen 230 PALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAF 273 (340)
T ss_pred HHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCcc
Confidence 233456777766444 577788788999999999997653
No 148
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=99.28 E-value=7.5e-11 Score=118.83 Aligned_cols=161 Identities=20% Similarity=0.296 Sum_probs=115.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHHhh-----cC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLSKL-----KG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~~l-----~~ 297 (531)
.+||++|+|||.|.||+..++.+..|.+|+++++|-|+- .+|.+.+.+ =|..+|.. +.++|+.+.|.... .+
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~e-KA~~~Ga~~~~viD~reeF~~~yi~~~i~a 81 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIRE-KALELGAEEAYVIDAREEFVEDYIFPAIKA 81 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHH-HHHHhCCceEEEeecHHHHHHHHHHHHHHh
Confidence 579999999999999999999999779999999999986 566666665 46778875 99999999886442 11
Q ss_pred CCCcccccchhh----HHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 298 VIDPETKRKIIG----KEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 298 ~~~p~~kr~~~~----~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
-..-+ ..+..+ ++. .+.+-++|++.| ++.++.|.. |.| +|+++.-.....+ .
T Consensus 82 na~Ye-g~YpL~TalaRPLIak~lVe~A~k~g------a~avaHGcT-----------GKG---NDQvRFe~~~~al--~ 138 (403)
T COG0137 82 NALYE-GVYPLGTALARPLIAKKLVEAAKKEG------ADAVAHGCT-----------GKG---NDQVRFELAILAL--N 138 (403)
T ss_pred hceee-ccccccchhhHHHHHHHHHHHHHHcC------CCEEEecCC-----------CCC---Cceeeeeeehhhh--C
Confidence 11111 112222 222 235567788887 899998873 443 4555543222222 2
Q ss_pred cccceeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 MKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 ~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
-.++++.|.++ +.++|..+||++.|+|...-.+.||+
T Consensus 139 p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~~~kpyS 177 (403)
T COG0137 139 PDLKIIAPWREWNLTREEEIEYAEEHGIPVKATKEKPYS 177 (403)
T ss_pred CCcEEEeehhhhccChHHHHHHHHHcCCCccccCCCCcc
Confidence 36789999998 88999999999999998766667776
No 149
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.27 E-value=2.3e-11 Score=119.66 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=106.1
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--c-CCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL--K-GVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l--~-~~~~- 300 (531)
++++|++|||+||+|+++|+++. +.++.++|+|+|...++..+.+ +.+++++|++++++.....+.... . +...
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~-~~~i~vvfiDTG~~~pet~e~~-~~~~~~~gl~l~v~~~~~~~~~~~~~~~~~~~~ 118 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV-DPDIPVIFLDTGYLFPETYRFI-DELTERLLLNLKVYRPDASAAEQEARYGGLWEQ 118 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHH-HHHHHHhCCCEEEECCCccHHHHHHHcCCCccc
Confidence 56999999999999999999996 7889999999999766555444 458999999999998875432221 1 2111
Q ss_pred cccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 301 PETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 301 p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
+-...+.||..+ ..-+.+.+++.+ . +++|+..++-..+.. ...+.. .....-+.
T Consensus 119 ~~~~~~~cc~~~K~~pl~~~~~~~~------~--~itG~R~~es~~R~~--------~~~~~~---------~~~~~rv~ 173 (241)
T PRK02090 119 SVEDRDECCRIRKVEPLNRALAGLD------A--WITGLRREQSGTRAN--------LPVLEI---------DGGRFKIN 173 (241)
T ss_pred cccCHHHHHHHHhhHHHHHHHhcCC------C--eEEEechhhCchhcc--------Cceeee---------cCCeEEEe
Confidence 002233455443 345566666544 3 789997665221100 001110 01334789
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++..||.+|.+..|||..-++..-|+
T Consensus 174 Pi~~Wt~~dV~~Yi~~~~lp~~pLY~~Gy~ 203 (241)
T PRK02090 174 PLADWTNEDVWAYLKEHDLPYHPLVDQGYP 203 (241)
T ss_pred ehhhCCHHHHHHHHHHcCCCCChHHHcCCC
Confidence 999999999999999999997656665444
No 150
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.26 E-value=2.9e-11 Score=124.93 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=95.9
Q ss_pred ccccccc-chhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCC
Q 039743 201 NAGWKLE-NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLH 279 (531)
Q Consensus 201 ~~~w~~~-~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lg 279 (531)
+.+|... .-++++++.+|+.-+..-.++||+|||+||+++|+++++.+|.+++++|+++|+.++.+.+.+.+ +++++|
T Consensus 35 ~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~-~~~~lg 113 (343)
T TIGR03573 35 KIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNN-LIKKLG 113 (343)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHH-HHHHcC
Confidence 3467543 23455666666542211359999999999999999997778999999999999987767677766 889999
Q ss_pred CcEEEEECchHH-----HHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCc
Q 039743 280 LPVTCVDATDQF-----LSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDV 343 (531)
Q Consensus 280 i~~~vvd~~~~f-----~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~ 343 (531)
++++++..+... ...+....+| +..+...++..+.+.|++.| ..++++|++.+.+
T Consensus 114 vd~~~i~~d~~~~~~l~~~~~~~~~~p---c~~c~~~~~~~l~~~A~~~g------i~~Il~G~~~dE~ 173 (343)
T TIGR03573 114 FDLHTITINPETFRKLQRAYFKKVGDP---EWPQDHAIFASVYQVALKFN------IPLIIWGENIAEE 173 (343)
T ss_pred CCeEEEeCCHHHHHHHHHHHHhccCCC---chhhhhHHHHHHHHHHHHhC------CCEEEeCCCHHHh
Confidence 999999886332 2223333334 33444456677888899888 8999999987743
No 151
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.26 E-value=5.8e-11 Score=118.71 Aligned_cols=173 Identities=15% Similarity=0.079 Sum_probs=113.0
Q ss_pred hhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECc
Q 039743 212 EEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 212 ~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~ 288 (531)
+.+..||+.+...++.++++|||+||+|+++|+.+++. ..+.++|+|+|..-++ ..+..+.+|+.+|+++++....
T Consensus 7 esi~ilRe~~~~f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~E-t~efrd~~a~~~gl~l~v~~~~ 85 (294)
T TIGR02039 7 EAIHIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFRE-MIAFRDHMVAKYGLRLIVHSNE 85 (294)
T ss_pred HHHHHHHHHHHhcCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHH-HHHHHHHHHHHhCCCEEEEech
Confidence 44455666555445678899999999999999999963 5789999999997554 4455555899999999999876
Q ss_pred hHHHHhhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccc-cc
Q 039743 289 DQFLSKLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHH-NV 366 (531)
Q Consensus 289 ~~f~~~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~-~~ 366 (531)
+.+.. +..........||..+ ...+.+.+++.+ .+.+++|+..+|-..+.. ..|.++. +.
T Consensus 86 ~~~~~---g~~~~~~~~~~~c~vlK~~pL~~al~e~g------~da~itG~RRDEe~sRak---------e~i~s~r~~~ 147 (294)
T TIGR02039 86 EGIAD---GINPFTEGSALHTDIMKTEALRQALDKNQ------FDAAFGGARRDEEKSRAK---------ERIFSFRNAF 147 (294)
T ss_pred hhhhc---CccccccChHHHhhHHHHHHHHHHHHHcC------CCEEEecCChhhhhHhhc---------Cceeeccccc
Confidence 54321 2211111112244443 346666666666 899999999888654321 0111110 00
Q ss_pred -----------------CCCCcccccceecccccCCHHHHHHHHHHcCCCccccc
Q 039743 367 -----------------GGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLK 404 (531)
Q Consensus 367 -----------------~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~ 404 (531)
+.+.+. ..--+.||.+++..||..|....|||..-++
T Consensus 148 ~~wD~~~q~Pelw~~~~~~~~~g-~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY 201 (294)
T TIGR02039 148 HQWDPKKQRPELWNLYNGRISKG-ESVRVFPLSNWTELDIWRYIAAENIPIVPLY 201 (294)
T ss_pred cccCccccCchhhhccccccccC-CcEEEechhhCCHHHHHHHHHHcCCCCCcCe
Confidence 001111 1224579999999999999999999964444
No 152
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.25 E-value=2.4e-11 Score=122.87 Aligned_cols=133 Identities=22% Similarity=0.279 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeec--------------------C
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVG--------------------E 106 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~--------------------~ 106 (531)
...|||++|||.++.--+. .....++|+++++|+||||+|||+.+..|--+|... +
T Consensus 362 ~~adGilvPGGFG~RGveG----~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MP 437 (585)
T KOG2387|consen 362 KSADGILVPGGFGDRGVEG----KILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMP 437 (585)
T ss_pred ccCCeEEeCCcccccchhH----HHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECc
Confidence 3479999999998532221 235568999999999999999999887653222211 0
Q ss_pred ---------cccceeeeEEEec-CCccccCCCCCceEEEEeeccCccc-----cC-CCCcEEEEEeCCC-cEEEEEECCC
Q 039743 107 ---------KQEYGRMEILVER-SSGIFGNKKVGHHQVVWMSHGDEAV-----VL-PDGFEVVARSQQG-AVAAVENREK 169 (531)
Q Consensus 107 ---------~~e~G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v~-----~l-p~g~~vla~s~~~-~v~ai~~~~~ 169 (531)
....|..+..+.. ++.+-+-+.+.....--+-|.+.|. .+ -.|+..++.+.++ .++.++.+++
T Consensus 438 E~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~H 517 (585)
T KOG2387|consen 438 EHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESH 517 (585)
T ss_pred CCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCC
Confidence 0111222211221 1211111121111223345666652 11 2489999998766 6788888888
Q ss_pred cE-EEEecCCCCCCC
Q 039743 170 RL-FGLQYHPEVTHS 183 (531)
Q Consensus 170 ~i-~gvQFHPE~~~~ 183 (531)
|+ .|+|||||+..-
T Consensus 518 P~fVg~QfHPE~~sr 532 (585)
T KOG2387|consen 518 PFFVGVQFHPEFKSR 532 (585)
T ss_pred CceeeeccCHHHhcC
Confidence 86 599999998753
No 153
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.19 E-value=3.6e-10 Score=132.18 Aligned_cols=177 Identities=21% Similarity=0.295 Sum_probs=114.3
Q ss_pred CCEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCC--CCCCCCC---------CChH
Q 039743 5 PELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHS--VHSPDAP---------AFPA 71 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s--~~~~~~~---------~~~~ 71 (531)
.++|+|+-| |+......+++++.+|+.++.+..+.-.+. ..+.+++||+++||.+. ..+...- .+..
T Consensus 1037 ~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~ 1116 (1307)
T PLN03206 1037 KPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQ 1116 (1307)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHH
Confidence 368999977 666677899999999999888776532221 12578999999999972 2221111 1112
Q ss_pred HHHHHHHhCCCcEEEeeHHHHHHHHH--cCCE----------------EeecCcc--cceeeeEEEec-CCccccCCCCC
Q 039743 72 GFLEWALSNGVYVLGICYGLQLMVQK--LDGV----------------VKVGEKQ--EYGRMEILVER-SSGIFGNKKVG 130 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~G~Qlla~~--~GG~----------------v~~~~~~--e~G~~~v~~~~-~~~l~~~~~~~ 130 (531)
++.+.+.+.+.++||||.|||+|.+. ++|. ..++... +--|..+++.. .+++++++...
T Consensus 1117 ~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~~s~si~l~~~~G~ 1196 (1307)
T PLN03206 1117 QFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIEDSPAIMLKGMEGS 1196 (1307)
T ss_pred HHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEECCCCChhhcccCCC
Confidence 33333335699999999999999985 2221 2222222 33455566643 46788888643
Q ss_pred ceEEEEeeccCccccCCC----------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 131 HHQVVWMSHGDEAVVLPD----------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 131 ~~~~v~~~H~~~v~~lp~----------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
.+.+|..|++.-...++ |...+-. ++++ .|+++.+++++++|++.|||+..
T Consensus 1197 -~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGRvlgmMpHPER~~ 1273 (1307)
T PLN03206 1197 -TLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGRHLAMMPHPERCF 1273 (1307)
T ss_pred -EEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCCEEEEcCCHHHhh
Confidence 58999999975422221 2222211 2333 48999999999999999999863
No 154
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=99.19 E-value=3.5e-11 Score=124.01 Aligned_cols=157 Identities=21% Similarity=0.301 Sum_probs=95.5
Q ss_pred eeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh-----hcCCCCc
Q 039743 228 ICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK-----LKGVIDP 301 (531)
Q Consensus 228 vvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~-----l~~~~~p 301 (531)
++|+|||.||++++.++++..+.+|+|+++|.|+. .++.+.+.+ -|.++|. +++++|.++.|.+. ++.-..-
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~-kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Y 78 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEE-KALKLGASKHIVVDARDEFAEDYIFPAIKANALY 78 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHH-HHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--B
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHH-HHHhcCCceeeecchHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999998458999999999994 456666665 5778897 99999999988643 2211111
Q ss_pred ccccch----hhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccc
Q 039743 302 ETKRKI----IGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLK 376 (531)
Q Consensus 302 ~~kr~~----~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ 376 (531)
+ .++. +.+. ..+...++|++.| ++.+++|.+ |.| ++.++..-....+. -+++
T Consensus 79 e-g~YpL~tsl~RplIa~~~v~~A~~~g------a~~vaHG~T-----------gkG---NDqvRFe~~~~al~--P~l~ 135 (388)
T PF00764_consen 79 E-GRYPLSTSLARPLIAKKLVEVAREEG------ADAVAHGCT-----------GKG---NDQVRFELSIRALA--PELK 135 (388)
T ss_dssp T-TTB--CCCCHHHHHHHHHHHHHHHHT-------SEEE---------------TTS---SHHHHHHHHHHHHS--TTSE
T ss_pred C-CCccccccchHHHHHHHHHHHHHHcC------CeEEeccCC-----------cCC---CchhHHHHHHHHhC--cCCc
Confidence 1 1122 2222 2345667888888 899999873 333 44444432221121 1568
Q ss_pred eeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 377 LIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 377 ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
++.|+++ ++++|-.+++++.|||.....+.|++
T Consensus 136 viaP~Rd~~~~R~~~i~ya~~~gIpv~~~~~~~yS 170 (388)
T PF00764_consen 136 VIAPWRDWEFSREEEIEYAKKHGIPVPVTKKKPYS 170 (388)
T ss_dssp EE-GGGHHHHHHHHHHHHHHHTT----SS---SSE
T ss_pred EecccchhhhhHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 9999999 88999999999999997655556665
No 155
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.18 E-value=2.3e-10 Score=134.68 Aligned_cols=176 Identities=16% Similarity=0.237 Sum_probs=115.0
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCC--CCCCCC---------CCChHH
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHS--VHSPDA---------PAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s--~~~~~~---------~~~~~~ 72 (531)
++|+|+-| |++.....+++++.+|+.++.+..+.-.. ...+.+++||+++||.+. +..... +.+..+
T Consensus 1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735 1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence 68999977 56667779999999999988887654221 223577899999999872 111111 111123
Q ss_pred HHHHHHhCCCcEEEeeHHHHHHHHH---cCCE-----EeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeeccC
Q 039743 73 FLEWALSNGVYVLGICYGLQLMVQK---LDGV-----VKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSHGD 141 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~G~Qlla~~---~GG~-----v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~ 141 (531)
+.+.+.+.+.++||||.|+|+|... ++|. ..++....| -|..+++.. .+++++++... .+.+|..|++
T Consensus 1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~s~s~~~~~~~g~-~l~~~vaHgE 1214 (1310)
T TIGR01735 1136 FQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGESPSIMLRGMAGS-RLPVAVAHGE 1214 (1310)
T ss_pred HHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECCCCChhhhhcCCC-EEEEEeEcCC
Confidence 3334436799999999999999943 3443 444433333 455666653 56888888643 5899999987
Q ss_pred ccccCC----------CCcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 142 EAVVLP----------DGFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 142 ~v~~lp----------~g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
.-...+ .+...+-. ++++ .|+++.+++++++|++.|||+..
T Consensus 1215 Gr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvl~~MpHPEr~~ 1281 (1310)
T TIGR01735 1215 GYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPERVF 1281 (1310)
T ss_pred CCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCCEEEEcCCHHHhh
Confidence 432111 12222211 2333 48999999999999999999863
No 156
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=99.17 E-value=1.5e-10 Score=112.05 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=104.9
Q ss_pred eeccCCCCCHHHHHHHHHHHhCCcEEEE-EEeCC-----CCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCc
Q 039743 228 ICALSGGVDSTVAATLVHKAIGDRLHCV-FVDNG-----LLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDP 301 (531)
Q Consensus 228 vvalSGGvDS~v~a~l~~k~~g~~v~~v-~id~g-----~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p 301 (531)
++++|||+||+++++++++. |.+++++ ++.+. ..+..+.+.+.+ +|+.+|+|+++++++. .. +
T Consensus 1 ~vl~SGGkDS~~al~~a~~~-G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~-~A~~lgip~~~i~~~~--------~~-~ 69 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEE-GHEVRCLITVVPENEESYMFHTPNIELTRL-QAEALGIPLVKIETSG--------EK-E 69 (218)
T ss_pred CeeecCcHHHHHHHHHHHHc-CCEEEEEEEeccCCCCccccCCCCHHHHHH-HHHHhCCCEEEEECCC--------CC-h
Confidence 47999999999999999986 9898754 65532 223346666554 8999999999999862 00 1
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceeccc
Q 039743 302 ETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPL 381 (531)
Q Consensus 302 ~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL 381 (531)
.. . ..++..+.+.+++ | .+.++.|++.+|.... .+. .+....+++++.||
T Consensus 70 ~~----~-~~l~~~l~~~~~~-g------~~~vv~G~i~sd~~~~------------~~e------~v~~~~gl~~~~PL 119 (218)
T TIGR03679 70 KE----V-EDLKGALKELKRE-G------VEGIVTGAIASRYQKS------------RIE------RICEELGLKVFAPL 119 (218)
T ss_pred HH----H-HHHHHHHHHHHHc-C------CCEEEECCcccHhHHH------------HHH------HHHHhCCCeEEeeh
Confidence 00 0 1144444444433 5 8999999998864321 011 12233466899999
Q ss_pred ccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchHHHHHh
Q 039743 382 KLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNSLDILR 431 (531)
Q Consensus 382 ~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l~~~~~ 431 (531)
-.++|.|+-+.+..+|+..-++.-.+ .||.-.++|. +|++-+ +.+.
T Consensus 120 w~~~~~el~~~~~~~G~~~~i~~v~~---~~l~~~~lG~~~~~~~~-~~l~ 166 (218)
T TIGR03679 120 WGRDQEEYLRELVERGFRFIIVSVSA---YGLDESWLGREIDEKYI-EKLK 166 (218)
T ss_pred hcCCHHHHHHHHHHCCCEEEEEEEec---CCCChHHCCCccCHHHH-HHHH
Confidence 99999999999999999754433322 3576677765 455555 4433
No 157
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=99.16 E-value=6.2e-11 Score=117.55 Aligned_cols=185 Identities=18% Similarity=0.148 Sum_probs=116.6
Q ss_pred EEEEEeCCCCc---HHHHHHHHHHCCCEEEEEeC--------CC----------ChhccccCCCCEEEEcCCCCC--CCC
Q 039743 7 LVLILDYGSQY---THLITRRIRSLSILSLCLSG--------TC----------SLDDITAKNPRVVILSGGPHS--VHS 63 (531)
Q Consensus 7 ~I~IlD~G~~~---~~~i~r~l~~~G~~~~v~~~--------~~----------~~~~~~~~~~dgiIlsGGp~s--~~~ 63 (531)
+|+||+.=..- ...+.|.|.+....+++... +. +++++....+||+|++|-|-- .++
T Consensus 36 ~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~Fe 115 (298)
T PF04204_consen 36 KIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPFE 115 (298)
T ss_dssp EEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-GG
T ss_pred EEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCcc
Confidence 79999763322 22355555555555555221 11 133444668999999999873 233
Q ss_pred CCCCCCh-HHHHHHHHhCCCcEEEeeHHHHH-HHHHcCCEEeecCcccceeeeEEEe-cCCccccCCCCCceEEEEeecc
Q 039743 64 PDAPAFP-AGFLEWALSNGVYVLGICYGLQL-MVQKLDGVVKVGEKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHG 140 (531)
Q Consensus 64 ~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Ql-la~~~GG~v~~~~~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~ 140 (531)
+...|-+ .++++++.++..+.|.||+|+|. |....|-.-...+..-+|....++. +.+||++|+++. +.+.+|..
T Consensus 116 ~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~~~~~pLl~Gfdd~--f~~PhSR~ 193 (298)
T PF04204_consen 116 EVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVLDPDHPLLRGFDDT--FFAPHSRY 193 (298)
T ss_dssp GSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES-SS-GGGTT--SE--EEEEEEEE
T ss_pred cCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeeccCCCChhhcCCCcc--ccCCcccc
Confidence 4334433 47999999999999999999999 7778888888888888999988865 567999999987 88877665
Q ss_pred Cccc--cC--CCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhh
Q 039743 141 DEAV--VL--PDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYF 193 (531)
Q Consensus 141 ~~v~--~l--p~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F 193 (531)
-.+. ++ .++++++|.++...+..+..++++.+-+|.|||.+.+....+..|..
T Consensus 194 t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd~~TL~~EY~RD~ 250 (298)
T PF04204_consen 194 TEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYDADTLAKEYRRDL 250 (298)
T ss_dssp EE--HHHHCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--TTHHHHHHHHHH
T ss_pred cCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccChhHHHHHHHHHH
Confidence 4442 23 67899999999888888888888999999999999865555554443
No 158
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.15 E-value=7e-10 Score=131.04 Aligned_cols=174 Identities=17% Similarity=0.242 Sum_probs=114.7
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCCh-hccccCCCCEEEEcCCCCCCCCCC--C-----------CCCh
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSL-DDITAKNPRVVILSGGPHSVHSPD--A-----------PAFP 70 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~~~~~dgiIlsGGp~s~~~~~--~-----------~~~~ 70 (531)
+||+|+-| |+......+++++.+|+.++++..+.-. ....+.++++|+++||.+. .+. + +.+.
T Consensus 1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~--gD~lgsg~~~a~~~~~n~~~~ 1113 (1290)
T PRK05297 1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSY--GDVLGAGEGWAKSILFNPRLR 1113 (1290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCC--cccchHHHHHHHHhhccHHHH
Confidence 68999977 6666778999999999998877764311 1112578999999999873 221 1 0111
Q ss_pred HHHHHHHHhCCCcEEEeeHHHHHHHHH--c-CC-----EEeecCccc--ceeeeEEEe-cCCccccCCCCCceEEEEeec
Q 039743 71 AGFLEWALSNGVYVLGICYGLQLMVQK--L-DG-----VVKVGEKQE--YGRMEILVE-RSSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~G~Qlla~~--~-GG-----~v~~~~~~e--~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H 139 (531)
.++-+.+.+.+.++||||.|||+|.+. + .+ ++.++.... --|..+++. ..+++++++.. ..+.+|..|
T Consensus 1114 ~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~~~s~~~~~~~g-~~l~~~vaH 1192 (1290)
T PRK05297 1114 DQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGMAG-SRLPIAVAH 1192 (1290)
T ss_pred HHHHHHHhCCCceEEEEcHHHHHHHHhCCccCCCCCCCeEeecCCCCeEEeeeEEEECCCCChhHhhcCC-CEEEEEEEc
Confidence 223333446799999999999999996 1 12 234443333 345556664 35688888863 358999999
Q ss_pred cCccccCCC---------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 140 GDEAVVLPD---------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 140 ~~~v~~lp~---------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
++.-...++ |...+-. ++++ .|+++.+++++++|++.|||+..
T Consensus 1193 geGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvlglMpHPEr~~ 1260 (1290)
T PRK05297 1193 GEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGRVTIMMPHPERVF 1260 (1290)
T ss_pred CcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCCEEEEcCChHHhc
Confidence 865432221 2222111 3444 48999999999999999999864
No 159
>PRK13794 hypothetical protein; Provisional
Probab=99.14 E-value=5.9e-10 Score=119.73 Aligned_cols=184 Identities=20% Similarity=0.154 Sum_probs=120.2
Q ss_pred ccchhhhhhhhhhccccC-ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 206 LENVLDEEVKCIKDTVGL-EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~-~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
++.+..+.++.|++.... .++++|++|||+||+|+++++.++++.++.++|+|+|+..++..+.+. .+++++|+++++
T Consensus 228 l~~~~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~-~~~~~~gl~i~~ 306 (479)
T PRK13794 228 LDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVE-DVEKHYGLEIIR 306 (479)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHH-HHHHhcCCcEEE
Confidence 344455566667765532 358999999999999999999999888899999999997665554444 489999999999
Q ss_pred EECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 285 VDATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 285 vd~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+..+ .|...+.....|....+.||..+. +=+.+..++.. .+....++|.-.++-..+.. ...+.
T Consensus 307 ~~~~-~f~~~~~~~G~P~~~~rwCc~~~K~~Pl~~~l~~~~----~~~~~~~~G~R~~ES~~Ra~--------~~~~~-- 371 (479)
T PRK13794 307 TKSE-EFWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKY----EGECLSFVGQRKYESFNRSK--------KPRIW-- 371 (479)
T ss_pred EchH-HHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHhcC----CCccEEEEEEEcCccHhHhc--------Ccccc--
Confidence 8776 566655444335444456665432 22233333210 11456788875544222110 00000
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..... .+.-.+.||.+++..||..|....++|..-++++-|+
T Consensus 372 -~~~~~---~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~ 413 (479)
T PRK13794 372 -RNPYI---KKQILAAPILHWTAMHVWIYLFREKAPYNKLYEQGFD 413 (479)
T ss_pred -cccCc---CCcEEEechHhCCHHHHHHHHHHcCCCCChHHHCCCC
Confidence 01111 1223679999999999999999999998777777666
No 160
>PRK13795 hypothetical protein; Provisional
Probab=99.11 E-value=1.3e-09 Score=121.06 Aligned_cols=184 Identities=18% Similarity=0.127 Sum_probs=123.3
Q ss_pred ccchhhhhhhhhhccccC-ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 206 LENVLDEEVKCIKDTVGL-EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~-~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
++.+.++.++.|++.+.. .++++|++|||+||+|+++|+.+++ .++.++|+|+|+..++..+.+.+ +++.+|+++++
T Consensus 224 l~~~~~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~-~~~~vvfiDTg~efpet~e~v~~-~~~~~gi~i~~ 301 (636)
T PRK13795 224 LEEKEKEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREAL-KDFKAFFNNTGLEFPETVENVKE-VAEEYGIELIE 301 (636)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhC-CCcEEEEEeCCCCCHHHHHHHHH-HHHHcCCcEEE
Confidence 555666777777776542 3589999999999999999999984 45889999999987665555554 88999999999
Q ss_pred EECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 285 VDATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 285 vd~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++..+.|...+.....|....+.||+.+. .-+.+..++.. . .....++|.-.++-..+.. ...+...
T Consensus 302 ~~~~~~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~---~-~~~~~i~G~Rr~ES~~R~~--------~~~~~~~ 369 (636)
T PRK13795 302 ADAGDAFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENF---P-KGCLTFVGQRKYESFSRAK--------SPRVWRN 369 (636)
T ss_pred EcccHhHHHhhhccCCCccccccchhhHhHHHHHHHHHhhC---C-CceEEEEEEEccchHHHhh--------CcccccC
Confidence 99988887766555445444446665432 22333333332 0 1235668886555322110 0011110
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.. . .+...+.||.+++..||..|....++|..-++++-|+
T Consensus 370 ~~---~---~~~~~~~PI~~Wt~~dVw~YI~~~~lp~npLY~~Gy~ 409 (636)
T PRK13795 370 PW---V---PNQIGASPIQDWTALEVWLYIFWRKLPYNPLYERGFD 409 (636)
T ss_pred CC---C---CCcEEEechHhCCHHHHHHHHHHhCCCCChHHHCCCC
Confidence 00 1 1223689999999999999999999998767776665
No 161
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.11 E-value=8.3e-10 Score=110.87 Aligned_cols=178 Identities=16% Similarity=0.066 Sum_probs=113.8
Q ss_pred cchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHh---CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 207 ENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~---g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+....+.+..|++.+...+++++++|||+||+|+++|+.+++ +..+-++|+|+|...++-.+-. +.+++++|++++
T Consensus 20 ~~le~esi~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efr-D~~a~~~gl~Li 98 (312)
T PRK12563 20 DRLEAESIHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFR-DRRAKELGLDLV 98 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHH-HHHHHHhCCcEE
Confidence 334455556666665545678999999999999999999986 3578899999999766554444 458999999999
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS 362 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt 362 (531)
+....+.+.. +........+.||+.+. .-+.+..++.+ .+.+++|.-.+|-..+.. ..+.+
T Consensus 99 v~~~~~~~~~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g------~da~itG~RRdE~~sRak---------~~ifs 160 (312)
T PRK12563 99 VHHNPDGIAR---GIVPFRHGSALHTDVAKTQGLKQALDHHG------FDAAIGGARRDEEKSRAK---------ERIFS 160 (312)
T ss_pred EecChHHHHh---CCCcccCCHHHHhhHHhHHHHHHHHHhcC------CCEEEEecCHHHhhhhcc---------Cceec
Confidence 8876554422 22111111234555432 45555555555 799999997776433210 00111
Q ss_pred c----cc-cC--CCCcc----------cccceecccccCCHHHHHHHHHHcCCCcccc
Q 039743 363 H----HN-VG--GLPKD----------MKLKLIEPLKLLFKDEVRQLGRILNVPEQFL 403 (531)
Q Consensus 363 ~----~~-~~--~l~~~----------~~~~ii~PL~~l~K~eVr~la~~lglp~~~~ 403 (531)
. +. +. +.|.. -..--+.||.+++..+|.+|.+..+||..-+
T Consensus 161 ~r~~~~~wD~~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pL 218 (312)
T PRK12563 161 FRSAFHRWDPKAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPL 218 (312)
T ss_pred ccccccccCccccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcc
Confidence 0 00 00 00100 0123579999999999999999999996433
No 162
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=99.08 E-value=2e-10 Score=106.44 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=85.7
Q ss_pred cccCCCCEEEEcCCCCCCCC--CCCCCCh-HHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEE-eecCcccceeeeEEEec
Q 039743 44 ITAKNPRVVILSGGPHSVHS--PDAPAFP-AGFLEWALSNGVYVLGICYGLQLMVQKLDGVV-KVGEKQEYGRMEILVER 119 (531)
Q Consensus 44 ~~~~~~dgiIlsGGp~s~~~--~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v-~~~~~~e~G~~~v~~~~ 119 (531)
+...++||+|++|.|...++ +...|-+ .++++++.++..|+||||+|+|+...+++|.. ...+...+|....++..
T Consensus 58 i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf~~~~~~ 137 (175)
T cd03131 58 IRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVFPHTILE 137 (175)
T ss_pred ccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEEEeeecC
Confidence 44678999999999984333 3223322 47899999999999999999999999999986 66778888988777766
Q ss_pred CCccccCCCCCceEEEEeeccCcccc--C--CCCcEEEE
Q 039743 120 SSGIFGNKKVGHHQVVWMSHGDEAVV--L--PDGFEVVA 154 (531)
Q Consensus 120 ~~~l~~~~~~~~~~~v~~~H~~~v~~--l--p~g~~vla 154 (531)
.+||++++++. |.+.++|.+.|.. + .++++++|
T Consensus 138 ~hpL~~g~~d~--F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 138 PHPLLRGLDDG--FDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred CCccccCCCCc--eeecCcccccCCHHHHhhCCCCEEcc
Confidence 78999999988 9999999877741 2 45666654
No 163
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.05 E-value=5.4e-10 Score=103.95 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=88.9
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCccccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKR 305 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr 305 (531)
+++|++|||+||+|+++|+.++ +.++..+|+|+|...++-.+.+ +.+++.+|+++++......+.........|....
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~-~~~~~vv~~dtg~e~p~t~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREA-GRKVPVVFIDTGYEFPETYEFV-DELAKRYGIPIIVYRPPETFEQRFILYGWPSKLW 78 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHH-HTTCEEEEEE-STB-HHHHHHH-HHHHHHTTCEEEEEETTSHHHHHHHHHHHSTTHH
T ss_pred CeEEEecCCHHHHHHHHHHHHh-cCCCcEEEEecCccCHHHHHHH-HHHHhhhhhhhhhcccccchhhccccccccchhh
Confidence 4789999999999999999998 4457899999998755444444 4488899999888888765433332111121110
Q ss_pred c-hhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceeccccc
Q 039743 306 K-IIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKL 383 (531)
Q Consensus 306 ~-~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~ 383 (531)
. .|+..+ .+-+.+..++.+ ...++.|.-.++-.. |. ....+.... .. ....-+.||.+
T Consensus 79 ~~~c~~~~K~~p~~~~~~~~~------~~~~~~G~R~~Es~~-----R~---~~~~~~~~~---~~---~~~~~~~Pi~~ 138 (174)
T PF01507_consen 79 RWWCCSILKVKPLRRALKEYG------KDVWIIGVRADESPR-----RA---KLPMFEFDE---DN---PKIIRVYPIAD 138 (174)
T ss_dssp HHHHHHHHTHHHHHHHHHHTT------ESEEE----TTSTTG-----CC---GSSSEEEET---TT---TSEEEE-TTTT
T ss_pred hHHHHHHHHHHHHhhhhcchH------HHHHHHHHHhhchhh-----hh---hchhhhccc---cc---CCEEEEEehhh
Confidence 0 122221 223344445554 678889986554322 11 000111100 11 01335679999
Q ss_pred CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 384 LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 384 l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
++++||.++.++.|+|..-++...|+
T Consensus 139 wt~~dV~~yi~~~~l~~~~lY~~g~~ 164 (174)
T PF01507_consen 139 WTEEDVWDYIKANGLPYNPLYDKGYS 164 (174)
T ss_dssp --HHHHHHHHHHHT--B-HHHHCT-S
T ss_pred CCHHHHHHHHHHhcCCCcHHHHCcCC
Confidence 99999999999999997666666554
No 164
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=99.05 E-value=6.2e-10 Score=109.58 Aligned_cols=184 Identities=15% Similarity=0.101 Sum_probs=129.0
Q ss_pred EEEEEeCCC---CcHHHHHHHHHHCCCEEEEEe--CC------C----------ChhccccCCCCEEEEcCCCCC--CCC
Q 039743 7 LVLILDYGS---QYTHLITRRIRSLSILSLCLS--GT------C----------SLDDITAKNPRVVILSGGPHS--VHS 63 (531)
Q Consensus 7 ~I~IlD~G~---~~~~~i~r~l~~~G~~~~v~~--~~------~----------~~~~~~~~~~dgiIlsGGp~s--~~~ 63 (531)
+|+||..=. .....+.|.|.+....+++.. .. . ++++++..++||+|++|-|-- .++
T Consensus 37 ~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~Fe 116 (300)
T TIGR01001 37 EILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVPFE 116 (300)
T ss_pred eEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCCcc
Confidence 689996632 223346666665555544421 11 1 234455678999999999873 344
Q ss_pred CCCCCCh-HHHHHHHHhCCCcEEEeeHHHHH-HHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccC
Q 039743 64 PDAPAFP-AGFLEWALSNGVYVLGICYGLQL-MVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGD 141 (531)
Q Consensus 64 ~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Ql-la~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~ 141 (531)
+...|-+ .++++++.++....|.||+|+|. |....|-.-...+..-+|...-++.+.+||++|+++. |.+.+|..-
T Consensus 117 eV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~h~~~~~~pL~rGfdd~--f~~PhSR~t 194 (300)
T TIGR01001 117 DVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYKHDIAPDSLLLRGFDDF--FLAPHSRYA 194 (300)
T ss_pred cCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEeecCccCCCCccccCCCCc--cccCCCCCC
Confidence 4444543 47999999999999999999999 5555666666667778897776556778999999987 777776643
Q ss_pred ccc--cC--CCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhh
Q 039743 142 EAV--VL--PDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRY 192 (531)
Q Consensus 142 ~v~--~l--p~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~ 192 (531)
.+. .+ .++++++|.|+...+..+..++++.+=++.|||.+......+..|+
T Consensus 195 ~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~RD 249 (300)
T TIGR01001 195 DFDAEDIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYVRD 249 (300)
T ss_pred CCCHHHHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHHHH
Confidence 442 22 3589999999877777777777777779999999876555555544
No 165
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.04 E-value=8.1e-10 Score=104.87 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=104.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCCh------hHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY------KERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~------~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~ 299 (531)
|+++++|||+||+++++++.+. |.++.|+++..+.... .+.+.+.+ +|+.+|||+++++++. .
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~-G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~-~A~~lgipl~~i~~~~---------~ 69 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE-GHEVVALLNLTPEEGSSMMYHTVNHELLEL-QAEAMGIPLIRIEISG---------E 69 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-CCEEEEEEEEecCCCCcccccccCHHHHHH-HHHHcCCcEEEEeCCC---------C
Confidence 5899999999999999999995 9999999988654322 25555554 8999999999998842 1
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
++. +. +.+++.+.+.+++ | .+.++.|++++|..-+ -+. .+....+++.+.
T Consensus 70 ~e~----~~-~~l~~~l~~~~~~-g------~~~vv~G~i~sd~~~~------------~~e------~~~~~~gl~~~~ 119 (194)
T cd01994 70 EED----EV-EDLKELLRKLKEE-G------VDAVVFGAILSEYQRT------------RVE------RVCERLGLEPLA 119 (194)
T ss_pred chH----HH-HHHHHHHHHHHHc-C------CCEEEECccccHHHHH------------HHH------HHHHHcCCEEEe
Confidence 122 11 3455555555554 5 8999999999885321 001 122234567899
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchH
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNS 426 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l 426 (531)
||=.....++-+---..|+..-++.-.. .+|--.++|. +|++.+
T Consensus 120 PLW~~~~~~ll~e~~~~g~~~~iv~v~~---~~L~~~~lG~~~~~~~~ 164 (194)
T cd01994 120 PLWGRDQEELLREMIEAGFKAIIIKVAA---EGLDESWLGREIDEMFI 164 (194)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEEecc---CCCCHHHCCCCccHhhH
Confidence 9988888887776678888754433222 2354455654 344443
No 166
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.3e-09 Score=96.63 Aligned_cols=141 Identities=24% Similarity=0.342 Sum_probs=95.1
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh------cCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL------KGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l------~~~~ 299 (531)
++-+.||||+||+++|.++.+. |+++..|+++-|.....+ .+.+ -|+.+|.+|+++..+...++.- .|.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl-gyev~LVTvnFGv~d~~k--~A~~-tA~~lgF~h~vl~Ldr~ile~A~em~iedg~- 76 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL-GYEVELVTVNFGVLDSWK--YARE-TAAILGFPHEVLQLDREILEDAVEMIIEDGY- 76 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh-CCCcEEEEEEeccccchh--hHHH-HHHHhCCCcceeccCHHHHHHHHHHHHhcCC-
Confidence 4778999999999999888886 999999999999986554 3444 5778999999999986554331 122
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
|....+++-+ ..++..|.. . .+.+++||-.||-. ++... +..+. +....+..-++
T Consensus 77 -P~~aIq~iH~---~alE~~A~r-~------~~~iaDGTRRDDrv---P~ls~--~~~qS---------LEdR~nv~Yi~ 131 (198)
T COG2117 77 -PRNAIQYIHE---MALEALASR-E------VDRIADGTRRDDRV---PKLSR--SEAQS---------LEDRLNVQYIR 131 (198)
T ss_pred -CchHHHHHHH---HHHHHHHHH-H------HHHHcCCCcccccC---ccccH--HHHhh---------HHHhcCceeec
Confidence 3322222211 234444443 2 68899999998843 22211 01222 33334556889
Q ss_pred ccccCCHHHHHHHHHHc
Q 039743 380 PLKLLFKDEVRQLGRIL 396 (531)
Q Consensus 380 PL~~l~K~eVr~la~~l 396 (531)
||..+.+.-|+.++..+
T Consensus 132 PL~G~G~kti~~Lv~~~ 148 (198)
T COG2117 132 PLLGLGYKTIRRLVSAI 148 (198)
T ss_pred ccccccHHHHHHHHHHH
Confidence 99999999999998765
No 167
>PRK08557 hypothetical protein; Provisional
Probab=98.99 E-value=7.1e-09 Score=108.91 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=111.0
Q ss_pred hhhhhhhhhhcccc---C-ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 209 VLDEEVKCIKDTVG---L-EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 209 ~~~~~~~~i~~~v~---~-~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
+..+.++.|++.+. . ...+++++|||+||+++++++.++ +.++.++|+|+|...++..+. .+.+++.+|+++++
T Consensus 162 ~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~-~~~i~vvfvDTG~efpET~e~-ve~v~~~ygl~i~v 239 (417)
T PRK08557 162 LEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEV-IPDLEVIFIDTGLEYPETINY-VKDFAKKYDLNLDT 239 (417)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHh-CCCCEEEEEECCCCCHHHHHH-HHHHHHHhCCCEEE
Confidence 34444555555432 1 246889999999999999999887 567899999999876544444 44589999999999
Q ss_pred EECchHHHHhhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 285 VDATDQFLSKLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 285 vd~~~~f~~~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++.+ .|...+....-|....+.||..+ ..-+.+..++.- +.+....++|.-.++-.. |.. .....
T Consensus 240 ~~~~-~f~~~~~~~G~Ps~~~RwCc~~lKi~Pl~r~lk~~~---~~~~~l~i~G~Rr~ES~~-----Ra~---~~~~~-- 305 (417)
T PRK08557 240 LDGD-NFWENLEKEGIPTKDNRWCNSACKLMPLKEYLKKKY---GNKKVLTIDGSRKYESFT-----RAN---LDYER-- 305 (417)
T ss_pred Eech-HHHHHHhhccCCcccchhhhHHHhHHHHHHHHHhhc---CcCceEEEEeeecccchh-----hcc---Cceec--
Confidence 9854 45554433333443445676543 223333333311 111345678875443222 110 00000
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+-++ ..--++|+.+++..||.++.+..++|..-++.+-|+
T Consensus 306 -~~~~~~---~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~ 347 (417)
T PRK08557 306 -KSGFID---FQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFE 347 (417)
T ss_pred -cccccc---CceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCC
Confidence 001111 112469999999999999999999997666665554
No 168
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.89 E-value=2.8e-08 Score=106.14 Aligned_cols=221 Identities=16% Similarity=0.233 Sum_probs=112.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCC-EEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSI-LSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~-~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|.||+.+| ..++++.+|. .++++..+. .+++ .++|+||||||.... . ..+...+.+...+.++|||
T Consensus 2 ~iGvlal~s-----v~~al~~lg~~~~~vv~~~~-~~~l--~~~D~lILPGG~~~~--~--~~l~~~l~~~i~~~g~pvl 69 (476)
T PRK06278 2 EIGLLDIKG-----SLPCFENFGNLPTKIIDENN-IKEI--KDLDGLIIPGGSLVE--S--GSLTDELKKEILNFDGYII 69 (476)
T ss_pred EEEEEehhh-----HHHHHHHhcCCCcEEEEeCC-hHHh--ccCCEEEECCCchhh--c--chHHHHHHHHHHHcCCeEE
Confidence 699999765 4566777775 555544332 3344 578999999984210 0 0112334444445599999
Q ss_pred EeeHHHHHHHHHcCCEEeec---CcccceeeeEE-------------EecCCccccCCCCCceEEEEeeccCccccCCC-
Q 039743 86 GICYGLQLMVQKLDGVVKVG---EKQEYGRMEIL-------------VERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD- 148 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~---~~~e~G~~~v~-------------~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~- 148 (531)
|||.|||||++..-..+... ...-.|.-+++ +... ..+.. . ...+.-|..|.+....+.+
T Consensus 70 GICgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~~~~~K~~~~v~g~v~~~-~~~~~-~-~~~v~GyEiH~~G~t~~~~~ 146 (476)
T PRK06278 70 GICSGFQILSEKIDIGRKSPVPIIKEGLGLLDVEFSPLICTDRVEFKIEDD-SLFTK-K-NERGTGFHCHTYGNIEINGD 146 (476)
T ss_pred EEcHHHHhcccccccCcccccccccCccceeeeeecCceeEeEEEEEEEec-ccccC-C-CCEEEEEeeccCCEEEECCC
Confidence 99999999998752111000 00112222211 1111 11110 1 1126677788744333211
Q ss_pred --CcE----EEEE----eCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhh
Q 039743 149 --GFE----VVAR----SQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIK 218 (531)
Q Consensus 149 --g~~----vla~----s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~ 218 (531)
.+. .... ......+++. +++++|+++|..+... .+-+.|+ +..+...+-. +-+.++-+.++
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~~~~eG~~--~g~V~GTYlHGifdn~----~~~~~~L-~~l~~~~~~~--~~~~~~~~~~~ 217 (476)
T PRK06278 147 TKILTYSKIQKLNYKMVGEKEILSGVF--KGKVFGTMVHNFLDNP----FVVENFL-KYLKIKEDEK--EEIFKKNKILK 217 (476)
T ss_pred ccchhhcceeeeeccCCCCcCCcCcee--cCCEEEEecCcccCCH----HHHHHHH-HHcCCChHHH--HHHHHHhHHHH
Confidence 121 1110 1111235655 5789999999998853 2333343 5444433211 11222222233
Q ss_pred cccc---------------Cccc-eeeccCCCCCHHHHHHHHHHHhCCc
Q 039743 219 DTVG---------------LEDH-VICALSGGVDSTVAATLVHKAIGDR 251 (531)
Q Consensus 219 ~~v~---------------~~~k-vvvalSGGvDS~v~a~l~~k~~g~~ 251 (531)
+.+. +..+ ++.|-+.|+==|+++..+.+++..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 218 EKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred HHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3221 0122 4557777887788877777776555
No 169
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.89 E-value=4.1e-09 Score=93.82 Aligned_cols=172 Identities=15% Similarity=0.230 Sum_probs=89.7
Q ss_pred CEEEEEeCCCCcHHH---HHHHHHHC--CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CCCCChHHHHHHHH
Q 039743 6 ELVLILDYGSQYTHL---ITRRIRSL--SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DAPAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~---i~r~l~~~--G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~~~~~~~l~~~~~ 78 (531)
..|.||...+.|... +-|.+-+. ++..++.+..+.. + ..+.||+|+|||.++.... ....+-+.+....-
T Consensus 12 ~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~-D--~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVh 88 (226)
T KOG3210|consen 12 VVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKN-D--LAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVH 88 (226)
T ss_pred eEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHH-H--HhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhc
Confidence 358899888877432 22333333 4455566655432 3 3678999999998853221 11122334443333
Q ss_pred hCCCcEEEeeHHHHHHHHHcCCEEeec----------CcccceeeeEEEecCCccccCC-CCCceEEEEeeccCccccCC
Q 039743 79 SNGVYVLGICYGLQLMVQKLDGVVKVG----------EKQEYGRMEILVERSSGIFGNK-KVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~~GG~v~~~----------~~~e~G~~~v~~~~~~~l~~~~-~~~~~~~v~~~H~~~v~~lp 147 (531)
...+|++|.|.||-+|.+.+.+.-.-. ....||......+... -|.++ +....|.+-+.....++.+-
T Consensus 89 n~~k~~WGTCAGmI~LS~ql~nek~~~~tL~~lkv~V~RN~FG~QaqSFT~~~-~~snfi~~~~~FpATFIRAPVie~IL 167 (226)
T KOG3210|consen 89 NPSKVTWGTCAGMIYLSQQLSNEKKLVKTLNLLKVKVKRNAFGRQAQSFTRIC-DFSNFIPHCNDFPATFIRAPVIEEIL 167 (226)
T ss_pred CCCccceeechhhhhhhhhhcCCcchhhhhhheeEEEeeccccchhhhheehh-cccccccCcccCchhheechhHHHhc
Confidence 334999999999999988653321100 0012343333332221 11111 11111444444444444433
Q ss_pred CCcEEEEEe--C-CC--cEEEEEECCCcEEEEecCCCCCC
Q 039743 148 DGFEVVARS--Q-QG--AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 148 ~g~~vla~s--~-~~--~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
+...+.+.. + +| .+.|.+ .+++++++.||||.+.
T Consensus 168 D~I~V~~l~~~~~nG~~~iVAa~-Q~~~iL~TSFHPELa~ 206 (226)
T KOG3210|consen 168 DPIHVQVLYKLDGNGQELIVAAK-QKNNILATSFHPELAE 206 (226)
T ss_pred CchhheEEEEecCCCcEEEEEEe-ccCCEeeeecChhhhc
Confidence 444333332 2 22 344444 3588999999999874
No 170
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.87 E-value=3.2e-09 Score=100.99 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=64.4
Q ss_pred EEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC--CCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYG-SQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA--PAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~--~~~~~~l~~~~~~~~iPv 84 (531)
|+|++|| .++..++.++++..|++++++....+ ..++|+|||+||.+...+-.. ..-..+.++.+.++++||
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~-----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pv 75 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEG-----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPV 75 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCC-----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcE
Confidence 5788997 78888999999999999998876544 246799999999853211100 011234455566789999
Q ss_pred EEeeHHHHHHHHHcC
Q 039743 85 LGICYGLQLMVQKLD 99 (531)
Q Consensus 85 LGIC~G~Qlla~~~G 99 (531)
||||.|||+|++.+.
T Consensus 76 lgiC~G~qlL~~~~~ 90 (194)
T cd01750 76 LGICGGYQMLGKYIV 90 (194)
T ss_pred EEECHHHHHhhhhcc
Confidence 999999999999873
No 171
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=98.84 E-value=6.4e-08 Score=93.47 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=98.8
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--cCC----
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL--KGV---- 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l--~~~---- 298 (531)
+++++.+|||+||+|++.|+.++ +.++..+|+|+|..-++-.+-+. .+++.++++++++.....+.... .+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~-~~~~~v~f~DTg~efpeT~efv~-~~~~~~~l~i~~~~~~~~~~~~~~~~g~~~~~ 91 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKI-SPDIPVIFLDTGYHFPETYELID-ELTERYPLNIKVYKPDLSLAEQAAKYGDKLWE 91 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHHH-HHHHHhCCceEEECCchhHHHHHHhcCCCccc
Confidence 47999999999999999999997 56788999999998765555544 47888999988886653332211 120
Q ss_pred CCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccce
Q 039743 299 IDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKL 377 (531)
Q Consensus 299 ~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~i 377 (531)
.++. .||..+ ..-+.+..++.+ ...+++|.-.+|-.. |.. ...+. .....+.--
T Consensus 92 ~~~~----~cc~~~K~~pl~~~l~~~~------~~~~i~GiR~~Es~~-----R~~---~~~~~-------~~~~~~~~~ 146 (212)
T TIGR00434 92 QDPN----KYDYLRKVEPMHRALKELH------ASAWFTGLRRDQGPS-----RAN---LSILN-------IDEKFGILK 146 (212)
T ss_pred cChH----HHhhHHhHHHHHHHHHhcC------CcEEEEecccccCcc-----ccC---Cceee-------ecCCCCcEE
Confidence 1221 233221 122333333333 456667875554221 110 00000 001112346
Q ss_pred ecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 378 IEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 378 i~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+.||.+++..||-++.++.|||..-++++-|+
T Consensus 147 v~PI~dWt~~dVw~Yi~~~~lp~npLY~~Gy~ 178 (212)
T TIGR00434 147 VLPLIDWTWKDVYQYIDAHNLPYNPLHDQGYP 178 (212)
T ss_pred EeehhhCCHHHHHHHHHHcCCCCCchhhcCCC
Confidence 89999999999999999999997666666544
No 172
>PHA03366 FGAM-synthase; Provisional
Probab=98.84 E-value=6e-08 Score=114.73 Aligned_cols=176 Identities=13% Similarity=0.140 Sum_probs=109.6
Q ss_pred CCEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCC--CCCCCCC---------ChH
Q 039743 5 PELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSV--HSPDAPA---------FPA 71 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~--~~~~~~~---------~~~ 71 (531)
.+||+|+-+ |+......+++++.+|+++..+..+.- .... +.+++||+++||.+.- .+...-| +..
T Consensus 1028 ~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~ 1106 (1304)
T PHA03366 1028 RHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRD 1106 (1304)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHH
Confidence 368999977 666677899999999999888876432 1222 5788999999998831 1111111 112
Q ss_pred HHHHHHHhCCCcEEEeeH-HHHHHHHH--cC-----------------CEEeecCcc--cceeeeEEEec--CCccccCC
Q 039743 72 GFLEWALSNGVYVLGICY-GLQLMVQK--LD-----------------GVVKVGEKQ--EYGRMEILVER--SSGIFGNK 127 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~-G~Qlla~~--~G-----------------G~v~~~~~~--e~G~~~v~~~~--~~~l~~~~ 127 (531)
++.+.+.+.+.++||||. |+|+|++. +| .+..++... |--|..+++.+ .+.+++++
T Consensus 1107 ~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~ 1186 (1304)
T PHA03366 1107 ALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRWLNFYIPETTKSVALRPL 1186 (1304)
T ss_pred HHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeeceEEEeCCCCCCcccccc
Confidence 333333356999999999 99999983 32 233333222 33466666655 45677777
Q ss_pred CCCceEEEEeeccCc-c--c------cC-CCCcEEEE----------------EeCC--CcEEEEEECCCcEEEEecCCC
Q 039743 128 KVGHHQVVWMSHGDE-A--V------VL-PDGFEVVA----------------RSQQ--GAVAAVENREKRLFGLQYHPE 179 (531)
Q Consensus 128 ~~~~~~~v~~~H~~~-v--~------~l-p~g~~vla----------------~s~~--~~v~ai~~~~~~i~gvQFHPE 179 (531)
.+. .+.+|..|... + . .+ ..|...+- .+++ ..|+++.+++++++|+++|||
T Consensus 1187 ~Gs-~lP~w~~g~~~~~~~~~~~~~~~l~~~~~ia~~Y~d~~~~~g~~t~~yP~NPNGS~~IaGi~s~dGR~l~mMphPe 1265 (1304)
T PHA03366 1187 RGS-VLPCWAQGTHLGFRYPNDGMEYILRNSGQIAATFHGADVDPGNPARHYPRNPTGNSNVAGLCSADGRHLALLFDPS 1265 (1304)
T ss_pred CCC-CCCEEeCCCccccccCCHHHHHHHHhCCcEEEEEeCCCCCcCccccCCCCCCCcCcceeeEECCCCCEEEecCCHH
Confidence 643 46777544331 1 0 11 11111111 1222 358999999999999999999
Q ss_pred CCC
Q 039743 180 VTH 182 (531)
Q Consensus 180 ~~~ 182 (531)
+.-
T Consensus 1266 r~~ 1268 (1304)
T PHA03366 1266 LSF 1268 (1304)
T ss_pred Hhh
Confidence 864
No 173
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.84 E-value=5e-08 Score=94.93 Aligned_cols=160 Identities=13% Similarity=0.041 Sum_probs=99.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEE--ECchHHHH--hhcCC-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCV--DATDQFLS--KLKGV- 298 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vv--d~~~~f~~--~l~~~- 298 (531)
.+++++++|||+||+|+++|++++.+.++-.+|+|+|...++-.+-+. .+++.+++++.++ ........ ...|.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d-~~~~~~~~~l~v~~~~~~~~~~~~~~~~G~~ 103 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKD-ELTKKYYQTLNLYKYDGCESEADFEAKYGKL 103 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHH-HHHHHhCCceEEEEeCCchhHHHHHHhcCCC
Confidence 357999999999999999999998536888999999998775555544 4888999544443 33221111 11121
Q ss_pred ---CCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 299 ---IDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 299 ---~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
.++ . .||..+. +=+.+..++++ .+..++|.-.++- . .+.. ...+ .......
T Consensus 104 ~~~~~~-~---~cc~~~Kv~Pl~ral~~~~------~~~~itG~Rr~es-~----~Ra~---~~~~-------~~d~~~~ 158 (226)
T TIGR02057 104 LWQKDI-E---KYDYIAKVEPMQRALKELN------ASAWFTGRRRDQG-S----ARAN---LPVI-------EIDEQNG 158 (226)
T ss_pred ccccCH-H---HHHHHHhhHHHHHHHHhcC------CCEEEEecchhhC-c----cccC---Cccc-------cccCCCC
Confidence 122 2 2333321 23333344443 5678889754432 1 1110 0000 0001112
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.--+.||.+++..||.+|.++.+||..-++++-|+
T Consensus 159 ~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~GY~ 193 (226)
T TIGR02057 159 ILKVNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYR 193 (226)
T ss_pred eEEEeehhhCCHHHHHHHHHHcCCCCCchhhcCCC
Confidence 33679999999999999999999998878877776
No 174
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.81 E-value=8.2e-08 Score=95.46 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=108.4
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHh---hcCCCCc
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK---LKGVIDP 301 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~---l~~~~~p 301 (531)
..+++++|||+||+|+++|+.+++ .++..+|+|+|...++-.+.+.+ +++++|+++.+......+... ...+..|
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~-~~~~vif~DTg~~f~Et~~~~d~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAF-PDFPVIFLDTGYHFPETYEFRDR-LAEEYGLDLKVYRPDDEVAEGEKYGGKLWEP 117 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhc-CCCcEEEEeCCCcCHHHHHHHHH-HHHHcCCeEEEecCccchhhhhhcccCCCCC
Confidence 358999999999999999999994 45999999999987766666555 899999999998888777666 4444334
Q ss_pred c-cccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 302 E-TKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 302 ~-~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
. ++ .||..+. .=+.+..++++ .+.+++|.-.++- .+ +. .+.-....+..+ +.--+.
T Consensus 118 ~~~r--~c~~i~K~~pl~~al~~~~------~~a~~~G~Rrdes-~~----Ra------k~~~~~~~~~~~---~~~rv~ 175 (261)
T COG0175 118 SVER--WCCDIRKVEPLKRALDEYG------FDAWFTGLRRDES-PT----RA------KLPVVSFDSEFG---ESIRVN 175 (261)
T ss_pred Ccch--hhhhhHhhhhHHHHHhhcC------CceEEEecccccc-cc----cc------cCceeccccCcC---CeEEEc
Confidence 4 33 3443322 23333344443 4678889744432 21 11 000000010100 234789
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++..||..|....++|..-++.+=|+
T Consensus 176 Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~ 205 (261)
T COG0175 176 PLADWTELDVWLYILANNLPYNPLYDQGYR 205 (261)
T ss_pred chhcCCHHHHHHHHHHhCCCCCcHHhccCC
Confidence 999999999999999999998777776665
No 175
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.79 E-value=4.7e-08 Score=115.12 Aligned_cols=174 Identities=16% Similarity=0.153 Sum_probs=107.4
Q ss_pred CCEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--C--C---------CCh
Q 039743 5 PELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--A--P---------AFP 70 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~--~---------~~~ 70 (531)
.+||+|+-| |+......+++++.+|+.+..+..+.-...-.+.+++||+++||.+ |++. + - .+.
T Consensus 929 ~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfs--y~D~lgsg~~~a~~il~n~~~~ 1006 (1202)
T TIGR01739 929 RHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASG--TLDSEVGARALAAALLRNQAFL 1006 (1202)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCC--CCccchHHHHHHHHhhcchHHH
Confidence 367999977 5555778999999999998888765422211246789999999877 3321 1 1 111
Q ss_pred HHHHHHHHhCCCcEEEeeH-HHHHHHHH--cCC-----------------EEeecCc--ccceeeeEEEec--CCccccC
Q 039743 71 AGFLEWALSNGVYVLGICY-GLQLMVQK--LDG-----------------VVKVGEK--QEYGRMEILVER--SSGIFGN 126 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~-G~Qlla~~--~GG-----------------~v~~~~~--~e~G~~~v~~~~--~~~l~~~ 126 (531)
.++.+.+.+.+.++||||. |+|+|++. ++. +..++.. .|--|..+++.. .+.++++
T Consensus 1007 ~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~~~v~i~~~s~si~~~~ 1086 (1202)
T TIGR01739 1007 RDLLTFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRWLNFYIPETTKSVFLRP 1086 (1202)
T ss_pred HHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEeeeEEEeCCCCCChhhhh
Confidence 2233333356999999998 99999984 210 1222222 233455666654 4567888
Q ss_pred CCCCceEEEEeeccCc--c--c------cC-CCCcEEEEE----------------eCC--CcEEEEEECCCcEEEEecC
Q 039743 127 KKVGHHQVVWMSHGDE--A--V------VL-PDGFEVVAR----------------SQQ--GAVAAVENREKRLFGLQYH 177 (531)
Q Consensus 127 ~~~~~~~~v~~~H~~~--v--~------~l-p~g~~vla~----------------s~~--~~v~ai~~~~~~i~gvQFH 177 (531)
+... .+.+|. |+.. . . .+ ..|...+-. +++ ..|+++.+++++++|+++|
T Consensus 1087 ~~g~-~lp~wv-~g~~~g~~~~~~~~~~~l~~~g~va~~Y~d~~~~~g~~a~~yP~NPNGS~~IAGi~s~dGR~l~lMph 1164 (1202)
T TIGR01739 1087 LRGS-VLPCWA-QGTHLGLYHPDDGVEEELENSGQIASTFHGNSPSSGLPATNYPRNPSGGSNVAGLCSADGRHLALLID 1164 (1202)
T ss_pred cCCC-Eeccce-EeccCCcEECCHHHHHHHHhCCeEEEEEeCCCCCCCccccCCCCCCCcCcceeeEECCCCCEEEecCC
Confidence 7644 467775 4331 1 1 11 112111111 222 2689999999999999999
Q ss_pred CCCCC
Q 039743 178 PEVTH 182 (531)
Q Consensus 178 PE~~~ 182 (531)
||+.-
T Consensus 1165 Per~~ 1169 (1202)
T TIGR01739 1165 PSLSF 1169 (1202)
T ss_pred HHHhh
Confidence 99864
No 176
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.76 E-value=9.1e-08 Score=91.33 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=86.6
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC--ChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA--FPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~--~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-.++|+++|+++.++....+ +++ .++|+||||||........... -..+.++.+.++++||+|||.|||+|++.
T Consensus 15 e~~~~l~~~G~~v~~~s~~~~-~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 15 ENLELLEAAGAELVPFSPLKD-EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHHHHHHCCCEEEEECCCCC-CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHH
Confidence 345788999998887754211 223 3489999999865322111000 01244555667799999999999999996
Q ss_pred c----C----------CEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCC----CcEEEEE-eCC
Q 039743 98 L----D----------GVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD----GFEVVAR-SQQ 158 (531)
Q Consensus 98 ~----G----------G~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~----g~~vla~-s~~ 158 (531)
+ | +++...+....|+..++...++++.. .... +.-+-.|.-... ..+ .+.+... ..+
T Consensus 92 ~~d~~g~~~~glGll~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~--v~G~E~H~g~t~-~~~~~~~~~~~~~~~~~~ 167 (198)
T cd03130 92 LDDEEGQSYPMAGVLPGDARMTKRLGLGYREAEALGDTLLGK-KGTT--LRGHEFHYSRLE-PPPEPDFAATVRRGRGID 167 (198)
T ss_pred hhccCCCEeccccccceeeEEcCCCcccCEEEEeecCccccC-CCCE--EEEEeccCcEee-cCCCcceEEEeccCCCCC
Confidence 5 2 23333334477888777654444322 1222 566667754332 111 1122211 111
Q ss_pred CcEEEEEECCCcEEEEecCCCCC
Q 039743 159 GAVAAVENREKRLFGLQYHPEVT 181 (531)
Q Consensus 159 ~~v~ai~~~~~~i~gvQFHPE~~ 181 (531)
....++.. ++++|...|=-..
T Consensus 168 ~~~dG~~~--~nv~gtY~Hg~f~ 188 (198)
T cd03130 168 GGEDGYVY--GNVLASYLHLHWA 188 (198)
T ss_pred CcccEEEE--CCEEEEEeeeecc
Confidence 12356654 6799999985443
No 177
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.72 E-value=6.5e-08 Score=94.24 Aligned_cols=160 Identities=15% Similarity=0.281 Sum_probs=108.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhh--cCCC-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKL--KGVI- 299 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l--~~~~- 299 (531)
.+++++|+|||.|.++.++++.+. |++|+|...|-|+ +++.+++.+ -|.+.|. ++.+.|.++.|.+.. +.+.
T Consensus 5 ~~~vVLAySGgLDTscil~WLkeq-GyeViay~AnvGQ--~edfe~ar~-kAlk~Gakk~~~ed~~~eFvedfi~Pa~qs 80 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCILAWLKEQ-GYEVIAYLANVGQ--KEDFEEARK-KALKSGAKKVVVEDVREEFVEDFIWPALQS 80 (412)
T ss_pred CceEEEEecCCcCchhhhHHHHhc-CceEEEeeccccc--hhhHHHHHH-hhhhcCceEEEehhhhHHHHhhcchhhhhh
Confidence 468999999999999999999996 9999999999998 566777765 3566776 577788888885442 0000
Q ss_pred Cc-ccccchhhHHHHH-----HHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 300 DP-ETKRKIIGKEFIC-----IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 300 ~p-~~kr~~~~~~~~~-----~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
+. =+.++.+|..+.| ..-++|.+.| +.++..|+ .|.| ++.++....-..+. -
T Consensus 81 ~a~YEd~YLLGTSlaRp~ia~~qv~va~~eg------~~aVsHGc-----------TGKG---NDQvrFELt~ysl~--P 138 (412)
T KOG1706|consen 81 SALYEDRYLLGTSLARPVIAKAQVDVAQREG------AKAVSHGC-----------TGKG---NDQVRFELTFYSLK--P 138 (412)
T ss_pred cchhhceeeeccccccchhhhhhhhHHhhcC------ceeeeccc-----------ccCC---CcceeeeeeeeccC--C
Confidence 00 0234445444322 2334566665 77887776 2333 45554432222332 2
Q ss_pred ccceeccccc--C-----CHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKL--L-----FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~--l-----~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+++.|++. + .+++..+||+..|+|.....+.|++
T Consensus 139 ~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~pws 181 (412)
T KOG1706|consen 139 DVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKNPWS 181 (412)
T ss_pred cceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCCCCcc
Confidence 5679999887 2 3588999999999998777777765
No 178
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.72 E-value=6.6e-08 Score=96.58 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=83.2
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH-HHH
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ-FLS 293 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~-f~~ 293 (531)
+.++..+..+.+|.++||||+||+++++++++..+.++.++++..+....+|.+.+.+ +|+++|+++++++++.. +..
T Consensus 6 ~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~-~a~~l~~~~~~~~~~~~~~~~ 84 (269)
T cd01991 6 DAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARR-VAEHLGTEHHEVEFTPADLLA 84 (269)
T ss_pred HHHHHHhccCCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHH-HHHHhCCcceEEEcCHHHHHH
Confidence 3444445557899999999999999999999875555788888877665667777766 89999999999998743 222
Q ss_pred hhc----CCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccc
Q 039743 294 KLK----GVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIE 345 (531)
Q Consensus 294 ~l~----~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~e 345 (531)
.+. ...+|...+ .......+.+.|++.+ +..+++|+..|++..
T Consensus 85 ~~~~~~~~~~~p~~~~---~~~~~~~l~~~a~~~~------~~v~l~G~g~Delf~ 131 (269)
T cd01991 85 ALPDVIWELDEPFADS---SAIPLYLLSRLARKHG------IKVVLSGEGADELFG 131 (269)
T ss_pred HHHHHHHHhCCCCCCc---HHHHHHHHHHHHHHhC------CEEEEecCCcccccc
Confidence 221 112343221 1123344566666665 789999998887653
No 179
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=98.71 E-value=4.8e-08 Score=90.65 Aligned_cols=138 Identities=25% Similarity=0.254 Sum_probs=88.1
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC-hhHHHHHHHHHHHhCCCcEEEEECchHH--HHhhcCCCCc
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR-YKERERVMDTFEKDLHLPVTCVDATDQF--LSKLKGVIDP 301 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~-~~e~~~~~~~la~~lgi~~~vvd~~~~f--~~~l~~~~~p 301 (531)
-+++||+|||+||+..+.+++.+ | +++|.|.+. ++++.+-.+.+|+.+|+.+..+..+... ...+.|--.|
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~-g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGalnGRfhp 134 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWA-G-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGALNGRFHP 134 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhh-c-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHHHHhhhccCCCCC
Confidence 48999999999999999888887 4 667766532 2355554555889999887777554221 1223333345
Q ss_pred ccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc-ccccceec
Q 039743 302 ETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK-DMKLKLIE 379 (531)
Q Consensus 302 ~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~-~~~~~ii~ 379 (531)
+-+| +.+ .+..++.|++++ .++++.|...+ .|+| .+.. +--+.+=-
T Consensus 135 CGRC----h~~I~~~V~~k~re~d------i~~vafGDlLs--------~G~~--------------svy~eD~i~rlnl 182 (255)
T COG1365 135 CGRC----HSMIENAVMDKARELD------IDVVAFGDLLS--------TGYG--------------SVYREDGIFRLNL 182 (255)
T ss_pred cchH----HHHHHHHHHHHHHhcC------CeEEEEccccc--------cccc--------------ceeccCCEEEEcc
Confidence 4332 333 346678888888 89999997543 2331 1111 11122333
Q ss_pred c-cccCCHHHHHHHHHHcCCCc
Q 039743 380 P-LKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 380 P-L~~l~K~eVr~la~~lglp~ 400 (531)
| +..++|+|+|.+.+..|...
T Consensus 183 PAflAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 183 PAFLALTKDELRSILKWNGYEL 204 (255)
T ss_pred HHHHhhCcHHHHHHHHhcCccc
Confidence 4 45589999999999888753
No 180
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.61 E-value=3.4e-07 Score=96.79 Aligned_cols=170 Identities=21% Similarity=0.205 Sum_probs=99.5
Q ss_pred hhhhcccc-CccceeeccCCCCCHHHHHHHHHHHhC--------CcEEEEEEeCCCCChhHHHHH------HHHHHHhCC
Q 039743 215 KCIKDTVG-LEDHVICALSGGVDSTVAATLVHKAIG--------DRLHCVFVDNGLLRYKERERV------MDTFEKDLH 279 (531)
Q Consensus 215 ~~i~~~v~-~~~kvvvalSGGvDS~v~a~l~~k~~g--------~~v~~v~id~g~~~~~e~~~~------~~~la~~lg 279 (531)
+.|++... .+...+|++|||+||++++.|+.+|+. ..++.++.|+|.-.+.-.+.+ .+..|++.|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555433 234589999999999999999998852 258888999998655322221 233567778
Q ss_pred CcEEEEEC----chHHHHhhcC--CCCcccccchhhHHH-H----HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC
Q 039743 280 LPVTCVDA----TDQFLSKLKG--VIDPETKRKIIGKEF-I----CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP 348 (531)
Q Consensus 280 i~~~vvd~----~~~f~~~l~~--~~~p~~kr~~~~~~~-~----~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~ 348 (531)
+++.+.-+ ...|+..+-| +..|..+...|+..+ + +.+.+..++.+ ...+++|+-.+ ||.
T Consensus 83 lpi~~~~v~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g------~~v~vlGvR~~---ES~- 152 (447)
T TIGR03183 83 LPIEPHRLTPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANG------EVILVLGTRKA---ESQ- 152 (447)
T ss_pred CCeEEEecCCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccC------CeEEEEEeehh---hHH-
Confidence 77755332 3456666544 334444445666432 2 23333333333 56788998543 221
Q ss_pred CCCCCCCccccccccc--cc-CCCCc---ccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 349 PPGTGRTHSHTIKSHH--NV-GGLPK---DMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 349 ~~g~g~~~~~~ikt~~--~~-~~l~~---~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
.| +..++.+. ++ ..+.. ..+.-+++|+.+++-+||-.+....++|.
T Consensus 153 -~R-----A~~m~k~e~~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~ 204 (447)
T TIGR03183 153 -AR-----AAVMEKHESGSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPW 204 (447)
T ss_pred -HH-----HhhhhhhccccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCC
Confidence 11 11221110 00 00111 11334899999999999999999887764
No 181
>PRK06850 hypothetical protein; Provisional
Probab=98.60 E-value=4.9e-07 Score=96.66 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=107.2
Q ss_pred cchhhhhhhhhhccccC-ccceeeccCCCCCHHHHHHHHHHHhC--------CcEEEEEEeCCCCChhHHHH------HH
Q 039743 207 ENVLDEEVKCIKDTVGL-EDHVICALSGGVDSTVAATLVHKAIG--------DRLHCVFVDNGLLRYKERER------VM 271 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~-~~kvvvalSGGvDS~v~a~l~~k~~g--------~~v~~v~id~g~~~~~e~~~------~~ 271 (531)
...++..++.|++.... +...+|++|||+||++++.|+.+++. ..++.+|.|+|.-.+.-.+. ..
T Consensus 16 ~~~~~~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i 95 (507)
T PRK06850 16 GEPIEELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERI 95 (507)
T ss_pred hHHHHHHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 34567777888886543 34589999999999999999988863 25889999999854432222 12
Q ss_pred HHHHHhCCCcEEEEE----CchHHHHhhcC--CCCcccccchhhHH-HHH----HHHHHHHHhhhhcCCCCcEEEecccC
Q 039743 272 DTFEKDLHLPVTCVD----ATDQFLSKLKG--VIDPETKRKIIGKE-FIC----IFDAFAHDLEQKLGKKPAYLVQGTLY 340 (531)
Q Consensus 272 ~~la~~lgi~~~vvd----~~~~f~~~l~~--~~~p~~kr~~~~~~-~~~----~~~~~a~~~g~~~~~~~~~l~~Gt~~ 340 (531)
+..|++.|+|+.+.- ....|+..+-| +..|......|+.. .+. .+.+..++.+ ...+++|+-.
T Consensus 96 ~~~a~~~glpi~~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~g------e~v~vlGvR~ 169 (507)
T PRK06850 96 NEAAKKQGLPITPHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFG------EVIVVLGVRK 169 (507)
T ss_pred HHHHHHcCCceEEEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcC------cEEEEEEeec
Confidence 335778898876532 23567666544 44455455566643 222 2333333333 4677899854
Q ss_pred CCccccCCCCCCCCCcccccccccccCC-CC---cccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 341 PDVIESCPPPGTGRTHSHTIKSHHNVGG-LP---KDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 341 ~D~~es~~~~g~g~~~~~~ikt~~~~~~-l~---~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
+ ||. .| +..++.+-..+. +. ...+.-++.|+.+++-+||..+....++|.
T Consensus 170 ~---ES~--~R-----A~~m~~~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~ 223 (507)
T PRK06850 170 A---ESA--AR-----AQVMAKHEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPW 223 (507)
T ss_pred c---ccH--HH-----HhhhhhhcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCC
Confidence 3 331 11 112211110000 10 011234789999999999999999887774
No 182
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.46 E-value=2e-07 Score=91.86 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=75.5
Q ss_pred hhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHH
Q 039743 212 EEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF 291 (531)
Q Consensus 212 ~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f 291 (531)
.+.+.++..+..++++.+.+|||+||+++++++++..+..+.+++++.+.....|...+.+ +|+.+|++|+.++.+...
T Consensus 5 ~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~-va~~~~~~~~~~~~~~~~ 83 (255)
T PF00733_consen 5 LLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARK-VARHLGLEHHEIELDPED 83 (255)
T ss_dssp HHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHH-HHHHHT-EEEEEEE-HHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHH-Hhcccccccceeeechhh
Confidence 3345566666668899999999999999999999955789999999887776667777766 899999999999887532
Q ss_pred -HHhh----cCCCCcccccchhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 292 -LSKL----KGVIDPETKRKIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 292 -~~~l----~~~~~p~~kr~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
.+.+ .....|..- ..... ....+.+.+++.| .+.+++|+..|.+.
T Consensus 84 ~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~a~~~~------~~~~ltG~GgDelf 134 (255)
T PF00733_consen 84 LLDNLEDIIWRLDGPSPL--DDPNSLPLYLLARLARENG------IRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHHHHHHHT---HH--HHHHHHHHHHHHHHHCHTT------BSEEE--TTHHHHH
T ss_pred HHHhHHHHHHHHhCCccc--ccccccHHHHHHHhhcccc------eeEEEecccccccc
Confidence 2211 111123210 01111 1122334444444 89999999766665
No 183
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=98.46 E-value=2.8e-07 Score=87.78 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=109.3
Q ss_pred hhccccCCCCEEEEcCCCCC--CCCCCCCCCh-HHHHHHHHhCCCcEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEE
Q 039743 41 LDDITAKNPRVVILSGGPHS--VHSPDAPAFP-AGFLEWALSNGVYVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEIL 116 (531)
Q Consensus 41 ~~~~~~~~~dgiIlsGGp~s--~~~~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~ 116 (531)
+++++..++||+|++|-|-- .+++.+.|-+ .+++++...+-.-.|-||+|.|.--..+-| .=...+..-+|...-+
T Consensus 92 feeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~GVy~h~ 171 (307)
T COG1897 92 FEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSGVYKHD 171 (307)
T ss_pred HHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhceeecc
Confidence 45566778999999999873 3444445543 478999888888999999999987776654 3334456668887766
Q ss_pred Ee-cCCccccCCCCCceEEEEeeccCcc-----ccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhh
Q 039743 117 VE-RSSGIFGNKKVGHHQVVWMSHGDEA-----VVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETL 190 (531)
Q Consensus 117 ~~-~~~~l~~~~~~~~~~~v~~~H~~~v-----~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~ 190 (531)
+. +.+++++|+.+. +.+.++..-.+ ...| ++++++.|+...+.-+..++++..-+-.|||.+.+....+.+
T Consensus 172 ~l~p~~~l~rGfdd~--f~~PhSR~t~~~~e~i~~~~-~LeIL~es~e~G~~l~a~k~~r~ifv~gH~EYD~~tL~~EY~ 248 (307)
T COG1897 172 ILSPHSLLTRGFDDS--FLAPHSRYTDVPKEDILAVP-DLEILAESKEAGVYLLASKDGRNIFVTGHPEYDATTLAQEYF 248 (307)
T ss_pred ccCccchhhccCCcc--ccCcccccccCCHHHHhhCC-CceeeecccccceEEEecCCCCeEEEeCCcchhhhHHHHHHH
Confidence 44 567899999988 77666544333 2233 699999998877777877778877788999998765555555
Q ss_pred hhh
Q 039743 191 RYF 193 (531)
Q Consensus 191 ~~F 193 (531)
|+-
T Consensus 249 RD~ 251 (307)
T COG1897 249 RDV 251 (307)
T ss_pred hhh
Confidence 543
No 184
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.44 E-value=5.8e-07 Score=73.58 Aligned_cols=62 Identities=27% Similarity=0.408 Sum_probs=53.3
Q ss_pred eeeccCCCCCHHHHHHHHHHH--hCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccc
Q 039743 227 VICALSGGVDSTVAATLVHKA--IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETK 304 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~--~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~k 304 (531)
+++++|||.||+++++++.+. .+.++++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV---------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH----------------------------------------------
Confidence 589999999999999999875 35788899987
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcccc
Q 039743 305 RKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIES 346 (531)
Q Consensus 305 r~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es 346 (531)
.+++.+.+.+++.+ ++++++||+.+|..|+
T Consensus 35 ------~~~~~~~~~a~~~~------~~~Iv~G~~~~d~~~~ 64 (86)
T cd01984 35 ------AFVRILKRLAAEEG------ADVIILGHNADDVAGR 64 (86)
T ss_pred ------HHHHHHHHHHHHcC------CCEEEEcCCchhhhhh
Confidence 55677888888887 8999999999999885
No 185
>PRK00784 cobyric acid synthase; Provisional
Probab=98.41 E-value=1.8e-06 Score=93.69 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=96.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHH-CCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCCC
Q 039743 7 LVLILDYGSQYTHLITRRIRS-LSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~-~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~i 82 (531)
+|+|+.|..-+...=...|++ +|++++++... +++ .++|||+|+||....++.. ...+. +.++.+.++++
T Consensus 253 ~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~---~~l--~~~d~lilpGg~~~~~~~~~~~~~~l~-~~i~~~~~~g~ 326 (488)
T PRK00784 253 RIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPG---EPL--PDADLVILPGSKNTIADLAWLRESGWD-EAIRAHARRGG 326 (488)
T ss_pred EEEEEeCCCcCCccChHHHhhcCCCeEEEECCc---ccc--ccCCEEEECCccchHHHHHHHHHcCHH-HHHHHHHHcCC
Confidence 688886443222233466776 89988877542 233 3679999999987544321 11122 33455567799
Q ss_pred cEEEeeHHHHHHHHHc---CCEEe-ecCcccceeeeEEEecCCc-------c-ccCCCCCceEEEEeeccCccccCCCCc
Q 039743 83 YVLGICYGLQLMVQKL---DGVVK-VGEKQEYGRMEILVERSSG-------I-FGNKKVGHHQVVWMSHGDEAVVLPDGF 150 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~---GG~v~-~~~~~e~G~~~v~~~~~~~-------l-~~~~~~~~~~~v~~~H~~~v~~lp~g~ 150 (531)
|+||||.|||+|++.+ .|+.. .....-.|.-+.+..-... . +...... +.-+.+|.-... .+++.
T Consensus 327 pilg~C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~~~~~~~g~~~~~~~~~g~~--~~GhEfH~s~~~-~~~~~ 403 (488)
T PRK00784 327 PVLGICGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVFEPEKTLRQVTGLLLGSGAP--VSGYEIHMGRTT-GPALA 403 (488)
T ss_pred eEEEECHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEecCceEEccEEEEEcCCCce--EEEEEecCcEee-CCCCC
Confidence 9999999999999977 33321 0001223433333221100 0 1111122 555566754322 22221
Q ss_pred EEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccc
Q 039743 151 EVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGW 204 (531)
Q Consensus 151 ~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w 204 (531)
..+.....+.-.++.+.+++++|.=.|-=. .. ..+.++|+ +.|+.++.|
T Consensus 404 ~~~~~~~~g~~~G~~~~~~nv~atY~H~~~---~n-p~~~~~~l-~~~~~~~g~ 452 (488)
T PRK00784 404 RPFLRLDDGRPDGAVSADGRVFGTYLHGLF---DN-DAFRRALL-NWLGARKGL 452 (488)
T ss_pred cCcEEecCCCcCceEecCCCEEEEeeeecc---CC-HHHHHHHH-HHHHHhcCC
Confidence 111110001125555434789988888622 22 45777777 777655544
No 186
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=98.41 E-value=3.5e-06 Score=92.28 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=110.2
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCC--CCCCCCCCCC-----hHH---H
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPH--SVHSPDAPAF-----PAG---F 73 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~--s~~~~~~~~~-----~~~---l 73 (531)
+||+||-= |+.-...++.++..+|+++.-+..++-++. ..+.+|.||+++||.+ ++.+...-|. .+. -
T Consensus 1059 PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~Q 1138 (1320)
T KOG1907|consen 1059 PKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQ 1138 (1320)
T ss_pred CceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHH
Confidence 68999944 554466788899999998776554433322 4467899999999998 2333322221 122 2
Q ss_pred HH-HHHhCCCcEEEeeHHHHHHHHH--cCCEEeecC----------cccceeeeEEEecC-CccccCCCCCceEEEEeec
Q 039743 74 LE-WALSNGVYVLGICYGLQLMVQK--LDGVVKVGE----------KQEYGRMEILVERS-SGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 74 ~~-~~~~~~iPvLGIC~G~Qlla~~--~GG~v~~~~----------~~e~G~~~v~~~~~-~~l~~~~~~~~~~~v~~~H 139 (531)
|+ .....+.=-||||.|+|+|+.. .|-.+...+ ..|--+..+.+..+ +-+++++.+. .+.+|..|
T Consensus 1139 F~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~~~SIml~gM~gs-~LgvwvAH 1217 (1320)
T KOG1907|consen 1139 FEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIESNVSIMLSGMAGS-VLGVWVAH 1217 (1320)
T ss_pred HHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCCCchhhhccccCC-ceeeEEEe
Confidence 22 2223567789999999999985 222222211 12233445666543 4566777654 48899999
Q ss_pred cCccccCC----------CCcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 140 GDEAVVLP----------DGFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 140 ~~~v~~lp----------~g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
+..-...+ +|+..+-. ++++ -|+++..++++.++++.|||+..
T Consensus 1218 GEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGRhLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1218 GEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGRHLAMMPHPERVF 1286 (1320)
T ss_pred cccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCCeeeccCCchhee
Confidence 97643222 23333332 2233 48999999999999999999864
No 187
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.39 E-value=1.7e-06 Score=93.68 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=80.6
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCC-CCChhHHHHHHHHHHHhCCCcEEEEECchH-
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNG-LLRYKERERVMDTFEKDLHLPVTCVDATDQ- 290 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g-~~~~~e~~~~~~~la~~lgi~~~vvd~~~~- 290 (531)
.+.++..+..+.++.+.+|||+||+++++++++..+ .++.++++..+ ....+|...+.+ +|+.+|++|+++++++.
T Consensus 243 ~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E~~~A~~-vA~~lg~~~~~i~~~~~~ 321 (467)
T TIGR01536 243 EDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDESPYARK-VADHLGTEHHEVLFSVEE 321 (467)
T ss_pred HHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCChHHHHHH-HHHHhCCcCeEEECCHHH
Confidence 344555555567899999999999999999988755 47888888765 233356556665 89999999999998743
Q ss_pred HHHhhc----CCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 291 FLSKLK----GVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 291 f~~~l~----~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+.+.+. ...+|...... .....+.+.|++.| ...+++|+..|++.
T Consensus 322 ~~~~~~~~v~~~~~p~~~~~~---~~~~~l~~~a~~~G------~~vlltG~GaDElf 370 (467)
T TIGR01536 322 GLDALPEVIYHLEDPTTIRAS---IPLYLLSKLAREDG------VKVVLSGEGADELF 370 (467)
T ss_pred HHHHHHHHHHhhCCCCCCchH---HHHHHHHHHHHhcC------CEEEEecCcchhcc
Confidence 332222 12234321111 11224456677666 78999999888774
No 188
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=98.20 E-value=1.1e-06 Score=86.99 Aligned_cols=167 Identities=22% Similarity=0.258 Sum_probs=105.0
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHH-----hCCcEEEEEEeCCCCCh-hHHHHHHHHHHHhCCCcEEEEECchHHH--
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKA-----IGDRLHCVFVDNGLLRY-KERERVMDTFEKDLHLPVTCVDATDQFL-- 292 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~-----~g~~v~~v~id~g~~~~-~e~~~~~~~la~~lgi~~~vvd~~~~f~-- 292 (531)
++.+++|.++-|||.||+|+|+.+... .|.++..+.+|.|.... .....+.+....++++|+.++...+.|.
T Consensus 48 ~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~ 127 (347)
T KOG2840|consen 48 FARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEW 127 (347)
T ss_pred cCCCCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccc
Confidence 555788999999999999999887432 46788889999887532 2333444446678899999998876553
Q ss_pred --Hhh-cCCC-CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccc
Q 039743 293 --SKL-KGVI-DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHN 365 (531)
Q Consensus 293 --~~l-~~~~-~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~ 365 (531)
+.+ ..+. .-++.|-+|+..+++.+.+-|..++ +..+++||+.||..|+.. ++|. +...+...+
T Consensus 128 tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~------~~~~~tghnaDD~aetvl~n~lrgd----s~rl~R~~~ 197 (347)
T KOG2840|consen 128 TMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLG------AAELVTGHNADDWAETVLMNLLRGD----SARLERLTE 197 (347)
T ss_pred hHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccc------hhhhhhcccchHHHHHHHHHHHHhH----HHHhhhccc
Confidence 000 0000 0223445666555566666666666 788999999999988631 1111 111111111
Q ss_pred cCCCCc-cc-ccceecccccCCHHHHHHHHHHcCC
Q 039743 366 VGGLPK-DM-KLKLIEPLKLLFKDEVRQLGRILNV 398 (531)
Q Consensus 366 ~~~l~~-~~-~~~ii~PL~~l~K~eVr~la~~lgl 398 (531)
+ ..+. .+ .+.-..||++-++.||.-++...-|
T Consensus 198 ~-~t~~~e~~~~~r~kplk~~~~keivLya~~~~L 231 (347)
T KOG2840|consen 198 I-TTPSLEMGIIPRLKPLKYASEKEIVLYASLSKL 231 (347)
T ss_pred c-ccCccccCccccccccccchhhehhhHHHHHHH
Confidence 1 0110 11 2446789999999999888766544
No 189
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=98.08 E-value=2.7e-05 Score=75.18 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=91.0
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC-----CC-hhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL-----LR-YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~-----~~-~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~ 299 (531)
|+++.+|||+||+++++.+.+. .++.+++.-.+. +. ....+.+ +..|+.+|||++.+..+..
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~--~~V~~L~~~~~~~~~s~~~h~~~~~~~-~~qA~algiPl~~~~~~~~--------- 69 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE--HEVISLVGVFSENEESYMFHSPNLHLT-DLVAEAVGIPLIKLYTSGE--------- 69 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc--CeeEEEEEEcCCCCCccccccCCHHHH-HHHHHHcCCCeEEEEcCCc---------
Confidence 5889999999999999999887 577776653322 21 1223333 4478999999988765421
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
.+ +.+ +-+.+.+++.| .+.++.|.+..+..- .- +..+....+++.+.
T Consensus 70 -~e-------~~~-~~l~~~l~~~g------v~~vv~GdI~s~~qr------------~~------~e~vc~~~gl~~~~ 116 (222)
T TIGR00289 70 -EE-------KEV-EDLAGQLGELD------VEALCIGAIESNYQK------------SR------IDKVCRELGLKSIA 116 (222)
T ss_pred -hh-------HHH-HHHHHHHHHcC------CCEEEECccccHHHH------------HH------HHHHHHHcCCEEec
Confidence 01 111 22223334445 889999987643210 00 11122234667899
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCC-CcchH
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDV-TEGNS 426 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~v-t~~~l 426 (531)
||=.....++.++. ..|+..-++.-. ..+|.-.++|.. |++-+
T Consensus 117 PLW~~d~~~l~e~i-~~Gf~aiIv~v~---~~gL~~~~LGr~id~~~~ 160 (222)
T TIGR00289 117 PLWHADPEKLMYEV-AEKFEVIIVSVS---AMGLDESWLGRRIDKECI 160 (222)
T ss_pred cccCCCHHHHHHHH-HcCCeEEEEEEc---cCCCChHHcCCccCHHHH
Confidence 99888888877664 688764433322 234666677653 44444
No 190
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.07 E-value=0.0001 Score=79.26 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=58.3
Q ss_pred EEEEE-eCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCCC
Q 039743 7 LVLIL-DYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~Il-D~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~i 82 (531)
+|+|+ |-=..| -..-.+.|++.|+++..++...+ +++ .++|+|||+||....++.. ......+.++.+.++++
T Consensus 247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~-~~l--~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~ 323 (451)
T PRK01077 247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLAD-EAL--PDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGK 323 (451)
T ss_pred eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCC-CCC--CCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCC
Confidence 78888 322222 12245778899998877653211 223 3789999999976433221 11112455666677899
Q ss_pred cEEEeeHHHHHHHHHc
Q 039743 83 YVLGICYGLQLMVQKL 98 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~ 98 (531)
||+|||-|+|+|++.+
T Consensus 324 ~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 324 PIYAECGGLMYLGESL 339 (451)
T ss_pred CEEEEcHHHHHHHhhh
Confidence 9999999999999976
No 191
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.05 E-value=8.9e-06 Score=89.60 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=77.2
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC---------CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG---------DRLHCVFVDNGLLRYKERERVMDTFEKDLHLP 281 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g---------~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~ 281 (531)
+.+.+.+++.+..+..+.+.||||+||+++|+++++.++ ..+..++ .|+....|.+.+.+ +|+.+|.+
T Consensus 212 ~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D~~~Ar~-vA~~lg~~ 288 (578)
T PLN02549 212 EAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPDLKAARE-VADYLGTV 288 (578)
T ss_pred HHHHHHHHHHhccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCHHHHHHH-HHHHhCCC
Confidence 334455666665567899999999999999999988653 2444444 45554567777765 89999999
Q ss_pred EEEEECch-HHHHhhcCC------CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 282 VTCVDATD-QFLSKLKGV------IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 282 ~~vvd~~~-~f~~~l~~~------~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
|+.+.++. .+.+.+..+ .+|..-+..+ .++ .+.+.+++.| ...+++|...|++.
T Consensus 289 h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~s~--p~y-ll~r~a~~~g------vkVvLsGeGaDElF 349 (578)
T PLN02549 289 HHEFHFTVQEGIDAIEDVIYHLETYDVTTIRAST--PMF-LMSRKIKSLG------VKMVLSGEGSDEIF 349 (578)
T ss_pred CeEEEEChHHHHHHHHHHHHHhcCCCCccchhHH--HHH-HHHHHHHhcC------CEEEEecCchHhhh
Confidence 99887763 233322211 1222111111 112 2344555555 78899999888874
No 192
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.01 E-value=0.0001 Score=79.19 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=94.4
Q ss_pred EEEEE-e--CCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC---CCChHHHHHHHHhC
Q 039743 7 LVLIL-D--YGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA---PAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il-D--~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~---~~~~~~l~~~~~~~ 80 (531)
+|+|+ | |.-.| +.-.+.|++.|+++..+....+ +++ .++|+|+|+||.+..++... ..+ .+-++.+.++
T Consensus 246 ~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-~~l--~~~d~l~ipGG~~~~~~~~l~~~~~~-~~~i~~~~~~ 320 (449)
T TIGR00379 246 RIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-TEL--PDVDAVYIGGGFPELFAEELSQNQAL-RDSIKTFIHQ 320 (449)
T ss_pred EEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-CCC--CCCCEEEeCCcHHHHHHHHHHhhhHH-HHHHHHHHHc
Confidence 68888 3 22222 3456778889998877644211 123 36799999999875443321 112 2344555677
Q ss_pred CCcEEEeeHHHHHHHHHc---CCEEeec-----------Cc-ccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 81 GVYVLGICYGLQLMVQKL---DGVVKVG-----------EK-QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~---GG~v~~~-----------~~-~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|.||+|+|-|+|+|++.+ .|++ ++ +. ..+|....+...++++.. .... +.-+-+|.-....
T Consensus 321 G~pv~g~CgG~~~L~~~i~~~~g~~-~~~Gllp~~t~~~~~~~~~gy~~~~~~~~~~~~~-~g~~--~~GhEfH~~~~~~ 396 (449)
T TIGR00379 321 GLPIYGECGGLMYLSQSLDNFEGQI-FMVGMLPTAATMTGRVQGLGYVQAEVVNDCLILW-QGEK--FRGHEFHYSRMTK 396 (449)
T ss_pred CCCEEEEcHHHHHHHhhhcCCCCce-eceeeeeeEEEEcCCcccccceEEEEecCccccC-CCCE--EEEEecCCccCcC
Confidence 999999999999999976 4443 21 11 123443333333333221 1222 5666667543221
Q ss_pred CCC-C--cEEEEEe-CCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 146 LPD-G--FEVVARS-QQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 146 lp~-g--~~vla~s-~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
.+. . +++.... .+....++.. ++++|...|=-+... ..+.++|+ +.|
T Consensus 397 ~~~~~~~~~~~~g~g~~~~~dG~~~--~nv~gsY~H~~~~~n---p~~~~~~l-~~~ 447 (449)
T TIGR00379 397 LPNAQFAYRVERGRGIIDQLDGICV--GSVLASYLHLHAGSV---PKFAAAFV-AFA 447 (449)
T ss_pred CCCcceEEEeccCCCCCCceeEEEe--CCEEEEeeeeeCCcC---HHHHHHHH-HHh
Confidence 111 1 1111100 0112256653 679999999655322 24666665 444
No 193
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.99 E-value=2.3e-05 Score=86.53 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=77.6
Q ss_pred hhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC-----------CcEEEEEEeCCCCChhHHHHHHHHHHHhC
Q 039743 210 LDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG-----------DRLHCVFVDNGLLRYKERERVMDTFEKDL 278 (531)
Q Consensus 210 ~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g-----------~~v~~v~id~g~~~~~e~~~~~~~la~~l 278 (531)
.+.+.+.++..+..+.++.+.||||+||+++|+++++..+ .++.+.++ |+-...|...+.+ +|+.+
T Consensus 223 r~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~Ar~-vA~~l 299 (586)
T PTZ00077 223 REALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCI--GLEGSPDLKAARK-VAEYL 299 (586)
T ss_pred HHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEc--CCCCCchHHHHHH-HHHHh
Confidence 3444555666666567899999999999999999988654 35666665 4433467777766 89999
Q ss_pred CCcEEEEECch-HHHHhhcCC----CCc--ccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 279 HLPVTCVDATD-QFLSKLKGV----IDP--ETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 279 gi~~~vvd~~~-~f~~~l~~~----~~p--~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
|.+|+.+.++. .+.+.+..+ ..| ..-+. .-.++ .+.+.+++.| ...+++|...|.+.
T Consensus 300 g~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~--~~p~y-ll~r~a~~~g------vkVvLsGeGaDElF 363 (586)
T PTZ00077 300 GTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRA--STPMY-LLSRRIKALG------IKMVLSGEGSDELF 363 (586)
T ss_pred CCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcch--HHHHH-HHHHHHHhcC------CeEEEecCchhhhc
Confidence 99998887753 223332221 112 11111 11222 3444566555 67888888777663
No 194
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.98 E-value=3.4e-05 Score=70.88 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred cCCCCEEEEcCCCCCCCCCCC---CCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 46 AKNPRVVILSGGPHSVHSPDA---PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~---~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
..++|+|+|+||....++... ..+. +-++.+.+++.||+|+|-|+|+|.+.+-
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~-~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLK-EAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHH-HHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 357899999999875544321 1222 3445566779999999999999999764
No 195
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.94 E-value=4.4e-05 Score=63.60 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChhc--cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHH
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLDD--ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLM 94 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~~--~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qll 94 (531)
......++.+++.+.+++....... ....++|+++++||+.............+.++...+++.|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 5678899999999999987654211 124678999999998754332100112344555666789999999999999
No 196
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.90 E-value=6.1e-05 Score=82.83 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=75.6
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCC-------------cEEEEEEeCCCCChhHHHHHHHHHHHh
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGD-------------RLHCVFVDNGLLRYKERERVMDTFEKD 277 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~-------------~v~~v~id~g~~~~~e~~~~~~~la~~ 277 (531)
+.+.+.++..+..+.++.+.||||+||+++|+++++..+. ++.++++.. -...|.+.+.+ +|+.
T Consensus 214 ~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A~~-vA~~ 290 (554)
T PRK09431 214 DALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGL--EGSPDLKAARE-VADH 290 (554)
T ss_pred HHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeC--CCCChHHHHHH-HHHH
Confidence 4445556666665778999999999999999999886442 466666643 22457777766 8999
Q ss_pred CCCcEEEEECch-HHHHhhcCC------CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 278 LHLPVTCVDATD-QFLSKLKGV------IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 278 lgi~~~vvd~~~-~f~~~l~~~------~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+|.+|+.+.++. .+.+.+..+ .+|..-+..+ .++- +.+.+++.+ ...+++|.-.|.+.
T Consensus 291 lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~--p~yl-l~~~~~~~g------vkvvLsGeGaDElF 355 (554)
T PRK09431 291 LGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRAST--PMYL-MARKIKAMG------IKMVLSGEGADELF 355 (554)
T ss_pred hCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHH--HHHH-HHHHHHHcC------CEEEEecCchhhhh
Confidence 999999998863 333333221 1333222111 1222 333333333 67778887666553
No 197
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.89 E-value=3.7e-05 Score=61.09 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChhc--cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHH
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLDD--ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLM 94 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~~--~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qll 94 (531)
..+.+.+++.+..+.+++....... ....++|++|++||+..........-..+.+....+++.|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 4678899999999999887655321 225679999999999865433200111233444455689999999999864
No 198
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.85 E-value=4e-05 Score=86.03 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=57.6
Q ss_pred hhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHH
Q 039743 213 EVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFL 292 (531)
Q Consensus 213 ~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~ 292 (531)
+.+.++..+..+..|.+.+|||+||+++++++++..+..+.++++.......+|...+.+ +|+.+|.+|+++.++....
T Consensus 247 l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~~~A~~-vA~~~g~~h~~~~~~~~~~ 325 (628)
T TIGR03108 247 LREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDESAYARQ-VAERYGTNHRVETVDPDDF 325 (628)
T ss_pred HHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChHHHHHH-HHHHhCCCCeEEecCHHHH
Confidence 334444445446689999999999999999988764456777776543333467777765 8999999999998875443
No 199
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=97.84 E-value=0.00024 Score=67.42 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH-HHH--hhcCCCC-cccccchhh
Q 039743 234 GVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ-FLS--KLKGVID-PETKRKIIG 309 (531)
Q Consensus 234 GvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~-f~~--~l~~~~~-p~~kr~~~~ 309 (531)
|+||+|+++|++++ ..++.++|+|+|...++..+.+. .+++++|++++++..... +.+ ...|... .......||
T Consensus 2 ~~~s~Vll~L~~~~-~~~~~vifvDTg~~FpET~~~~d-~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc 79 (191)
T TIGR02055 2 GAEDVVLVDLAAKV-RPDVKVFFLDTGRLFKETYETID-QVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECC 79 (191)
T ss_pred ChHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHHH-HHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHH
Confidence 78999999999998 45688999999998876555544 488999999988865321 111 1122211 011022344
Q ss_pred HHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHH
Q 039743 310 KEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDE 388 (531)
Q Consensus 310 ~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~e 388 (531)
..+. +-+.+..+ + .+..++|.-.++-.. +. ...+....+. ...--+.||.+++..|
T Consensus 80 ~~~K~~Pl~~~l~--~------~~~~i~G~Rr~Es~~-----R~----~~~~~~~~~~------~~~~~~~Pi~~Wt~~d 136 (191)
T TIGR02055 80 GIRKVEPLKRALA--G------VSAWITGLRRDQSPT-----RA----QAPFLEIDEA------FGLVKINPLADWTSED 136 (191)
T ss_pred HHHhHHHHHHHHh--c------CCEEEEEeccccCch-----hc----CCceeeecCC------CCeEEEEecccCCHHH
Confidence 3321 12222222 1 456778875554222 11 0001110000 1123579999999999
Q ss_pred HHHHHHHcCCCccccccCCCC
Q 039743 389 VRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 389 Vr~la~~lglp~~~~~~~P~~ 409 (531)
|.++.++.|||..-++.+=|+
T Consensus 137 Vw~Yi~~~~lp~npLY~~Gy~ 157 (191)
T TIGR02055 137 VWEYIADNELPYNPLHDRGYP 157 (191)
T ss_pred HHHHHHHcCCCCChHHHcCCC
Confidence 999999999998666665555
No 200
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.82 E-value=0.00042 Score=73.67 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=94.1
Q ss_pred EEEEE---eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC--CCChHHHHHHHHhCC
Q 039743 7 LVLIL---DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA--PAFPAGFLEWALSNG 81 (531)
Q Consensus 7 ~I~Il---D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~--~~~~~~l~~~~~~~~ 81 (531)
+|+|- -|.-.|..+ .+.|+++ ++.+.+..- ..+.+ .++|+|+|+||....++... ...... ++.+.++|
T Consensus 235 ~iavA~D~AF~FyY~en-l~~L~~~-aelv~fSPl-~~~~l--p~~D~l~lpGG~~e~~~~~L~~n~~~~~-i~~~~~~G 308 (433)
T PRK13896 235 TVAVARDAAFCFRYPAT-IERLRER-ADVVTFSPV-AGDPL--PDCDGVYLPGGYPELHADALADSPALDE-LADRAADG 308 (433)
T ss_pred eEEEEEcCccceeCHHH-HHHHHhc-CcEEEEcCC-CCCCC--CCCCEEEeCCCchhhHHHHHHhCCcHHH-HHHHHHCC
Confidence 68887 344445444 3577777 544443221 11233 36899999999875544311 112233 44455779
Q ss_pred CcEEEeeHHHHHHHHHc---CCEEeec-----------C-cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccC
Q 039743 82 VYVLGICYGLQLMVQKL---DGVVKVG-----------E-KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~---GG~v~~~-----------~-~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
.||+|+|-|+|+|++.+ .|+..++ + ...+|...++...++++.. .... ++-+-.|.-... +
T Consensus 309 ~pi~aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m~~r~~~lGy~~~~~~~~~~~~~-~G~~--i~GhEfHys~~~-~ 384 (433)
T PRK13896 309 LPVLGECGGLMALAESLTTTDGDTHEMAGVLPADVTMQDRYQALDHVELRATDDTLTAG-AGET--LRGHEFHYSSAT-V 384 (433)
T ss_pred CcEEEEehHHHHhhccccCCCCCEecccceeeEEEEEccceeEEEeEEEEEccCccccC-CCCe--EEEEeeeCeEEE-C
Confidence 99999999999999976 2332221 1 1245555555544444432 1223 666677755433 3
Q ss_pred CCCcEEEEEeCCC-----cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 147 PDGFEVVARSQQG-----AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 147 p~g~~vla~s~~~-----~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++-..+.....+ ...++.. ++++|.-.|-=+... .+++|+
T Consensus 385 ~~~~~~~~~~~~g~g~~~~~dG~~~--~nv~asY~H~hf~~~-----~~~~f~ 430 (433)
T PRK13896 385 GSDARFAFDVERGDGIDGEHDGLTE--YRTLGTYAHVHPESG-----AFDRFL 430 (433)
T ss_pred CCCCceEEEeccCCCCCCcccEEEE--CCEEEEehhhcCCch-----HHHHHH
Confidence 3221212211111 1256664 679999998755432 677775
No 201
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.74 E-value=9.7e-05 Score=79.86 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=50.3
Q ss_pred EEEEEeC--CCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCC
Q 039743 7 LVLILDY--GSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNG 81 (531)
Q Consensus 7 ~I~IlD~--G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~ 81 (531)
+|+|+.+ =+.|+ =.+.|+..- .+...| ..+++ .++|+|+|+||....++.. ...+... ++.+.++|
T Consensus 249 ~Iav~~~~~~~nf~--~~~~L~~~~-~~~f~~---~~~~l--~~~d~lilpGg~~~~~~~~~l~~~~~~~~-i~~~~~~G 319 (475)
T TIGR00313 249 RIGVVRLPRISNFT--DFEPLRYEA-FVKFLD---LDDSL--TGCDAVIIPGSKSTIADLYALKQSGFAEE-ILDFAKEG 319 (475)
T ss_pred EEEEEcCCcccCcc--ChHHHhhCC-CeEEeC---Ccccc--ccCCEEEECCcchHHHHHHHHHhcChHHH-HHHHHHcC
Confidence 6888853 23333 345565541 222222 22334 3789999999986443321 1122333 44455679
Q ss_pred CcEEEeeHHHHHHHHHc
Q 039743 82 VYVLGICYGLQLMVQKL 98 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~ 98 (531)
.||+|||-|||+|++.+
T Consensus 320 ~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 320 GIVIGICGGYQMLGKEL 336 (475)
T ss_pred CcEEEEcHHHHHhhhhh
Confidence 99999999999999965
No 202
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.69 E-value=0.00078 Score=71.96 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=95.3
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHH---HhhcCCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFL---SKLKGVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~---~~l~~~~~- 300 (531)
++++++.|||.|| |+++++.+. +..+-.+|+|+|...++-.+.+.+ ++++||++++++.-+..-. ....|...
T Consensus 116 ~~iavasSG~eds-vLlhl~~~~-~~~ipV~flDTG~lFpETy~~~d~-v~~~ygl~l~~~~p~~~~~~~~~~~~G~~~~ 192 (463)
T TIGR00424 116 NDIAIAFSGAEDV-ALIEYAHLT-GRPFRVFSLDTGRLNPETYRFFDA-VEKQYGIRIEYMFPDAVEVQALVRSKGLFSF 192 (463)
T ss_pred CCEEEEeccHHHH-HHHHHHHHh-CCCCcEEEecCCCCCHHHHHHHHH-HHHHhCCceEEECCCcchHHHHHHhcCcccC
Confidence 4799999988886 567788776 777889999999998766555544 8899999998773321101 11223211
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccc-cCCCCCCCCCcccccccccccCCCCcc-ccccee
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIE-SCPPPGTGRTHSHTIKSHHNVGGLPKD-MKLKLI 378 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~e-s~~~~g~g~~~~~~ikt~~~~~~l~~~-~~~~ii 378 (531)
.+..+..||..+. .+-+.+.+. +.+..++|--. |... + |. ....+.......+.... -..--+
T Consensus 193 ~~~~~~~CC~irK--VePL~raL~-----~~~awitG~Rr-~Qs~~t----Ra---~~~~ve~d~~~~~~~~~~~~~iKv 257 (463)
T TIGR00424 193 YEDGHQECCRVRK--VRPLRRALK-----GLKAWITGQRK-DQSPGT----RS---EIPVVQVDPVFEGLDGGVGSLVKW 257 (463)
T ss_pred CcCChHHHhhHHh--HHHHHHHHH-----hCCcEEeeecc-ccCccc----cc---cCCcccccccccccccCCCceEEE
Confidence 1112234554321 122222222 14567888633 3221 1 11 00011100000000000 012367
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.||.+++..||..|.++.+||..-++.+=|+
T Consensus 258 nPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~ 288 (463)
T TIGR00424 258 NPVANVEGKDVWNFLRTMDVPVNTLHAQGYV 288 (463)
T ss_pred eecccCCHHHHHHHHHHcCCCCCchhhcCCC
Confidence 9999999999999999999998777777666
No 203
>PLN02309 5'-adenylylsulfate reductase
Probab=97.63 E-value=0.0011 Score=70.87 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=95.4
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHH---HHhhcCCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF---LSKLKGVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f---~~~l~~~~~- 300 (531)
++++++.|||.|| |+++++++. +..+-.+|+|+|.+.++-.+.+.+ +.++||++++++--+..- .....|...
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~-~~~ipV~flDTG~lfpETy~~~d~-v~~~ygl~i~~~~P~~~~~~~~~~~~g~~~~ 187 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLT-GRPFRVFSLDTGRLNPETYRLFDA-VEKHYGIRIEYMFPDAVEVQALVRNKGLFSF 187 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHh-CCCCcEEEecCCCCCHHHHHHHHH-HHHHhCCceEEECCCcchHHHHHHhcCcccc
Confidence 5799999977776 566777775 777889999999998866666554 889999999887322110 111223211
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc-ccccceec
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK-DMKLKLIE 379 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~-~~~~~ii~ 379 (531)
.+..+..||+.+ -.+-+.+.+. +.+..++|--.++-..+ |. ....+.......+... .-.+--+.
T Consensus 188 ~~~~~~~Cc~ir--KVePL~raL~-----~~~awitG~Rr~Qs~~~----Ra---~l~~ve~d~~~~~~~~~~~~~lKvn 253 (457)
T PLN02309 188 YEDGHQECCRVR--KVRPLRRALK-----GLRAWITGQRKDQSPGT----RA---EVPVVQVDPVFEGLDGGPGSLVKWN 253 (457)
T ss_pred ccCChHHhhhhH--hHHHHHHHHh-----hCCEEEEeeccccCccc----cc---cCCeeeecccccccccCCCCeeEEc
Confidence 111223444432 1222223222 14677788633331101 11 0011111000000000 00122589
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++..||.+|.++.+||..-++.+=|+
T Consensus 254 Pl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~ 283 (457)
T PLN02309 254 PLANVTGNEVWNFLRTMDVPVNSLHAQGYV 283 (457)
T ss_pred ccccCCHHHHHHHHHHcCCCCCcchhcCCC
Confidence 999999999999999999998777777666
No 204
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.62 E-value=0.00025 Score=78.87 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=75.6
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC---ChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL---RYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~---~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
+.+.+.++..+..+.+|.+.||||+||+++++++++.-+..+.++++...-. ..+|.+.+.+ +|+.+|.+|+.+.+
T Consensus 247 ~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~~~A~~-vA~~~g~~h~~i~~ 325 (589)
T TIGR03104 247 EALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEFEYSDI-IAERFHTRHHKIRI 325 (589)
T ss_pred HHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChHHHHHH-HHHHhCCcCeEEEc
Confidence 3344555555665778999999999999999999876345677777643221 2367777766 89999999999887
Q ss_pred ch-HHHHhhc----CCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 288 TD-QFLSKLK----GVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 288 ~~-~f~~~l~----~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+. .+.+.+. ....|-..-..+ .++ .+.+.+++ + ...+++|.-.|.+.
T Consensus 326 ~~~~~~~~l~~~v~~~~~P~~~~~~~--~~~-~l~~~a~~-~------~kV~LsGeGaDElF 377 (589)
T TIGR03104 326 PNHRVLPALPEAVAAMSEPMVSHDCV--AFY-LLSEEVSK-H------VKVVQSGQGADEVF 377 (589)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCchHH--HHH-HHHHHHhC-C------CeEEeecCchHhcc
Confidence 63 2333321 122332111111 111 23333432 2 68888998776653
No 205
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.57 E-value=0.00069 Score=65.49 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=60.3
Q ss_pred CEEEEEeC------CCCcHHH--HHHHHHHCCCEEEEEeCCC---------------------------------Chhcc
Q 039743 6 ELVLILDY------GSQYTHL--ITRRIRSLSILSLCLSGTC---------------------------------SLDDI 44 (531)
Q Consensus 6 ~~I~IlD~------G~~~~~~--i~r~l~~~G~~~~v~~~~~---------------------------------~~~~~ 44 (531)
++|+|+=- |..-... -..+|+++|+.+.+..... +++++
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 81 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA 81 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence 46777732 2222222 3489999999988765321 11222
Q ss_pred ccCCCCEEEEcCCCCCC---CC----CCCCCC---hHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 45 TAKNPRVVILSGGPHSV---HS----PDAPAF---PAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 45 ~~~~~dgiIlsGGp~s~---~~----~~~~~~---~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
...+||+|+||||.+.. ++ ++.... ..++++.+.++++||.+||.|-++|+.++
T Consensus 82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 24579999999996532 11 111111 23677788889999999999999999876
No 206
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=97.41 E-value=0.0011 Score=64.06 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=88.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEE-E-eCC---CCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVF-V-DNG---LLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~-i-d~g---~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|+++.+|||+||+.+++.+.+. .++.++. + +.+ .+...--.+..+..|+.+|||+..+..+..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~---------- 69 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE--HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT---------- 69 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh--CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC----------
Confidence 5788999999999999999887 5666543 2 221 111111123334478899999877543210
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP 380 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~P 380 (531)
.+ ...+-+.+..++.| .+.++.|.+..+-.-. - +..+....+++.+.|
T Consensus 70 ~e--------~~~e~l~~~l~~~g------v~~vv~GdI~s~~qr~------------~------~e~v~~~lgl~~~~P 117 (223)
T TIGR00290 70 EE--------DEVEELKGILHTLD------VEAVVFGAIYSEYQKT------------R------IERVCRELGLKSFAP 117 (223)
T ss_pred cc--------HHHHHHHHHHHHcC------CCEEEECCcccHHHHH------------H------HHHHHHhcCCEEecc
Confidence 11 11123334444445 8999999876532110 0 111223346678999
Q ss_pred cccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchH
Q 039743 381 LKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNS 426 (531)
Q Consensus 381 L~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l 426 (531)
|=.....++-+-.-..|+..-++.-. ..+|--.++|. +|++-+
T Consensus 118 LW~~~~~~ll~e~i~~G~~aiIv~v~---a~gL~~~~LGr~i~~e~i 161 (223)
T TIGR00290 118 LWHRDPEKLMEEFVEEKFEARIIAVA---AEGLDESWLGRRIDRKMI 161 (223)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEEEe---cCCCChHHcCCcccHHHH
Confidence 99888887776666888875443322 22355555654 344433
No 207
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.39 E-value=0.00062 Score=63.83 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 48 NPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 48 ~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+|+|+++||++....... .....+++.+.++++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~-~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLD-EKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccC-HHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 5799999999753211111 113466777778899999999999999985
No 208
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=97.39 E-value=0.0012 Score=62.96 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=91.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEe---CC--CCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVD---NG--LLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id---~g--~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|+++.+|||+||..+++.+.+. |.+|.++..- ++ +|....--+..+.+|+.+|+++...+.+-..
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~-G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~--------- 71 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE-GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEE--------- 71 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc-CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccc---------
Confidence 6889999999999999999887 8877765432 22 2322222233445788999998887765310
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP 380 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~P 380 (531)
+ .-.+-+.+..+.++ .+.++.|.++.+--- ..+..+.....++.+.|
T Consensus 72 -e--------~eve~L~~~l~~l~------~d~iv~GaI~s~yqk------------------~rve~lc~~lGl~~~~P 118 (223)
T COG2102 72 -E--------REVEELKEALRRLK------VDGIVAGAIASEYQK------------------ERVERLCEELGLKVYAP 118 (223)
T ss_pred -h--------hhHHHHHHHHHhCc------ccEEEEchhhhHHHH------------------HHHHHHHHHhCCEEeec
Confidence 0 01122333344444 788999987654210 01112334456688999
Q ss_pred cccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchH
Q 039743 381 LKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNS 426 (531)
Q Consensus 381 L~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l 426 (531)
|=...-.++-.---..|+..-|+.- +..+|--.++|. ++++.+
T Consensus 119 LWg~d~~ell~e~~~~Gf~~~Iv~V---sa~gL~~~~lGr~i~~~~~ 162 (223)
T COG2102 119 LWGRDPEELLEEMVEAGFEAIIVAV---SAEGLDESWLGRRIDREFL 162 (223)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEEE---eccCCChHHhCCccCHHHH
Confidence 9888877777666777876533322 223343344443 344444
No 209
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00074 Score=74.14 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=72.1
Q ss_pred hhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEE-EEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch-HHHHh
Q 039743 217 IKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHC-VFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD-QFLSK 294 (531)
Q Consensus 217 i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~-v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~-~f~~~ 294 (531)
++..+-.+..+.+.+|||+|||++|+++++....+... .++........|.+.+.+ .|+.||.+|+.+-++. .+.+.
T Consensus 223 V~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D~~~a~~-~A~~lg~~h~~~~~~~~e~~~~ 301 (542)
T COG0367 223 VKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDAKYARA-VAKFLGTPHHEIILTNEELLNA 301 (542)
T ss_pred HHHHhccCCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCchHHHHHH-HHHHhCCCcEEEeecHHHHHHH
Confidence 33334336789999999999999999999986655553 444333322347777665 8999999998887763 33333
Q ss_pred hcC----CCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 295 LKG----VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 295 l~~----~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
++. +..|.. -..+-.++- ..+.+++.+ ...+..|.-.|.+.
T Consensus 302 ~~~vv~~~~~p~~--~~~~~ply~-~~~~a~~~g------~kVvLSGeGADElF 346 (542)
T COG0367 302 LPEVVKALDTPGG--MAASIPLYL-LSRKARAEG------EKVVLSGEGADELF 346 (542)
T ss_pred HHHHHhhcCCCCc--ccchhHHHH-HHHhhhhcC------cEEeecCccHHHHh
Confidence 322 223332 122223333 345566655 56666777666543
No 210
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.35 E-value=0.0003 Score=67.86 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=60.2
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHC-CCEEEEEeCCCChhcc-ccCCCCEEEEcCCCCCCCCCC-CCCChHHHHHHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSL-SILSLCLSGTCSLDDI-TAKNPRVVILSGGPHSVHSPD-APAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~-G~~~~v~~~~~~~~~~-~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~~~~ 78 (531)
.+|++|-..+ .|.+++.++++++ |+.++.+....+.+.. ...+.|+|+|+||-....-.. ...-..++++.+.
T Consensus 32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~ 111 (212)
T cd03146 32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKAAL 111 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHH
Confidence 5799996654 3567788999999 9988876532111101 146789999999833110000 0011234566666
Q ss_pred hCCCcEEEeeHHHHHHHHH
Q 039743 79 SNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~ 97 (531)
+++.|++|+|.|+|++...
T Consensus 112 ~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 112 ERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HCCCEEEEECHhHHhhCCC
Confidence 7899999999999999874
No 211
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.33 E-value=0.001 Score=70.49 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=58.1
Q ss_pred EEEEE--eCCCCcHHHHHHHHHHC-CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC---CCCCChHHHHHHHHhC
Q 039743 7 LVLIL--DYGSQYTHLITRRIRSL-SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP---DAPAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il--D~G~~~~~~i~r~l~~~-G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~---~~~~~~~~l~~~~~~~ 80 (531)
+|+|+ ..++.|+.. ..|+.. ++++.+++...++ .++|.+||||.-++..|- ...+++.++.+++..
T Consensus 253 ~Iav~~lp~isNFtD~--dpL~~~~~v~v~~v~~~~~l-----~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~- 324 (486)
T COG1492 253 RIAVIRLPRISNFTDF--DPLRAEPDVRVRFVKPGSDL-----RDADLVILPGSKNTIADLKILREGGMDEKILEYARK- 324 (486)
T ss_pred EEEEecCCCccccccc--hhhhcCCCeEEEEeccCCCC-----CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhC-
Confidence 56766 567777643 344443 8888888765543 337999999987643221 124666777777554
Q ss_pred CCcEEEeeHHHHHHHHHc
Q 039743 81 GVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~ 98 (531)
+.||+|||-|||+|.+.+
T Consensus 325 ~~~viGICGG~QmLG~~i 342 (486)
T COG1492 325 GGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CCCEEEEcchHHhhhhhh
Confidence 899999999999998864
No 212
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.33 E-value=0.00061 Score=62.81 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHCCCEEEEEeCCC---------------ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 21 ITRRIRSLSILSLCLSGTC---------------SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~---------------~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
....+++.|..+.++..+. ..+++...++|+|+++||+....-...+. ..++++.+.++++|+.
T Consensus 18 ~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~-l~~~l~~~~~~~~~i~ 96 (166)
T TIGR01382 18 PLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNK-AVRLVREFVEKGKPVA 96 (166)
T ss_pred HHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHH-HHHHHHHHHHcCCEEE
Confidence 4578888898887764321 11111122589999999976211111112 3466777778899999
Q ss_pred EeeHHHHHHHHH
Q 039743 86 GICYGLQLMVQK 97 (531)
Q Consensus 86 GIC~G~Qlla~~ 97 (531)
|||.|.++|+.+
T Consensus 97 ~ic~G~~~La~a 108 (166)
T TIGR01382 97 AICHGPQLLISA 108 (166)
T ss_pred EEChHHHHHHhc
Confidence 999999999984
No 213
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0013 Score=67.77 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=75.7
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHh-------CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAI-------GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~-------g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
.+.+++.+=.+-.+-|.||||.||+++|+++.|.+ |.+++...| |+-...+...+.+ +|+.+|..|+..-
T Consensus 215 ~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaI--Gle~SPDL~aark-VAd~igt~Hhe~~ 291 (543)
T KOG0571|consen 215 EKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAI--GLEDSPDLLAARK-VADFIGTIHHEHT 291 (543)
T ss_pred HHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEe--cCCCChhHHHHHH-HHHHhCCcceEEE
Confidence 34445544336689999999999999999997754 335665554 6655567777766 9999999998887
Q ss_pred CchH-HHHhhcCC------CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 287 ATDQ-FLSKLKGV------IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 287 ~~~~-f~~~l~~~------~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
++.. -.+.+..+ -|+..-| +.+-+-++.+..+++| ...++.|.-.|.+.
T Consensus 292 ft~qegidal~eVI~hLETYDvttIR---astpmyLlsr~Ikk~g------vkmvlSGEGsDEif 347 (543)
T KOG0571|consen 292 FTIQEGIDALDEVIYHLETYDVTTIR---ASTPMYLLSRKIKKLG------VKMVLSGEGSDEIF 347 (543)
T ss_pred EcHHHHHHHHHHHheeeeccccceEe---cCCchHHHHHHHHhcc------eEEEEecCCchhhh
Confidence 7632 22223222 1333222 2232335566677776 67788888666553
No 214
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.21 E-value=0.0026 Score=60.05 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=82.2
Q ss_pred HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CC--CChHHHHHHHHhCCCcEEEeeHHHHHHHH
Q 039743 21 ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--AP--AFPAGFLEWALSNGVYVLGICYGLQLMVQ 96 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~--~~~~~l~~~~~~~~iPvLGIC~G~Qlla~ 96 (531)
+-++.+.+|+.+++.+.+... .+....+|-+++.||.. ++.. .. .....-++.+++.++|+|.||-|.|+|.+
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~d-~~~~~~~Dl~~~GGgqD--~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLTD-TFPDDSYDLYFLGGGQD--YEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ehHHHHhcCCceEEEEeecCC-CCCcccccEEEecCchH--HHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 457788899999998875432 23245678888877754 2111 00 11224566778889999999999999998
Q ss_pred Hc----CCEEeec-----------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEE-----e
Q 039743 97 KL----DGVVKVG-----------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVAR-----S 156 (531)
Q Consensus 97 ~~----GG~v~~~-----------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~-----s 156 (531)
.+ |-++... .++-.|.-.++.+..+ +.+.+. ..=+-+|+-. +-|.++++.++. .
T Consensus 103 yY~~a~G~ri~GlGiLd~~T~~~~~~R~IGdiv~~~~~~~---e~~~et--~~GFENH~Gr-T~L~~d~~pLG~Vv~G~G 176 (250)
T COG3442 103 YYETASGTRIDGLGILDHYTENPQTKRFIGDIVIENTLAG---EEFGET--LVGFENHGGR-TYLGPDVKPLGKVVYGYG 176 (250)
T ss_pred eeecCCCcEeecccceeeeeccccccceeeeEEeecccch---HHhCCe--eeeeecCCCc-eecCCCCccceeEEEccC
Confidence 53 4333322 1222333323222111 112333 4555577643 445544444443 2
Q ss_pred CC--CcEEEEEECCCcEEEEecCC
Q 039743 157 QQ--GAVAAVENREKRLFGLQYHP 178 (531)
Q Consensus 157 ~~--~~v~ai~~~~~~i~gvQFHP 178 (531)
++ ...+++.. ++++|+=||=
T Consensus 177 Nn~eD~~eG~~y--kn~~aTY~HG 198 (250)
T COG3442 177 NNGEDGTEGAHY--KNVIATYFHG 198 (250)
T ss_pred CCccccccceee--eeeEEEeecC
Confidence 22 23455543 5799999984
No 215
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.17 E-value=0.0013 Score=60.60 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCEEEEEeCC-CC----------------hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 20 LITRRIRSLSILSLCLSGT-CS----------------LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~-~~----------------~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
.+...++..|+++.++..+ .. .++....++|+|+++||+.. ...........+++.+.++++
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~-~~~~~~~~~~~~l~~~~~~~~ 95 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP-DKLRRDPDAVAFVRAFAEAGK 95 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh-hhhccCHHHHHHHHHHHHcCC
Confidence 3557788899988887544 21 11111235799999999842 111111112456677778899
Q ss_pred cEEEeeHHHHHHHHH
Q 039743 83 YVLGICYGLQLMVQK 97 (531)
Q Consensus 83 PvLGIC~G~Qlla~~ 97 (531)
||.|||.|.++|+++
T Consensus 96 ~i~~ic~G~~~La~a 110 (165)
T cd03134 96 PVAAICHGPWVLISA 110 (165)
T ss_pred eEEEEchHHHHHHhc
Confidence 999999999999984
No 216
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.17 E-value=0.001 Score=65.04 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=39.8
Q ss_pred cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 46 AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..+||+|+||||.+..++-.......++++.+.++++||-.||.|-++|..+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 4579999999997644332222223578888889999999999999999886
No 217
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.17 E-value=0.00025 Score=61.07 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCCCEEEEcCCCCCCCCCC-CCCChHHHHHHHHhCCCcEEEeeHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPD-APAFPAGFLEWALSNGVYVLGICYGLQLM 94 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~~~~~~~iPvLGIC~G~Qll 94 (531)
.++|.||||||.....-.. ...- .+.++...+++.|+||||+|.-+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 4789999999755321111 0111 345555567899999999998765
No 218
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=97.13 E-value=0.011 Score=61.22 Aligned_cols=173 Identities=20% Similarity=0.190 Sum_probs=93.5
Q ss_pred EEEEE-eCCCCc--HHHHHHHHHH-CCCEEEEEeCCCC-h-hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 7 LVLIL-DYGSQY--THLITRRIRS-LSILSLCLSGTCS-L-DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il-D~G~~~--~~~i~r~l~~-~G~~~~v~~~~~~-~-~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
+|+|- |-|..- .+.....||+ +.-...|.+.+.. + .+.-..+.+.+|+|||....|....-.-....++.+.++
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~ 81 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQFVEN 81 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHHHHHc
Confidence 47776 445433 2334556665 3333444444321 1 111135689999999998766543222223567777888
Q ss_pred CCcEEEeeHHHHHHHHHc----CC-EEeecCcc---------------------cceeeeEEEecCCccccCCCCCceEE
Q 039743 81 GVYVLGICYGLQLMVQKL----DG-VVKVGEKQ---------------------EYGRMEILVERSSGIFGNKKVGHHQV 134 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~----GG-~v~~~~~~---------------------e~G~~~v~~~~~~~l~~~~~~~~~~~ 134 (531)
|--.||||.|.-.-+... |. ...-...+ +.|...+.+.-... ...++. +.
T Consensus 82 GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~~gf~Y~se~Gara~~l~~~~~--~~~~~~--~~ 157 (367)
T PF09825_consen 82 GGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAFPGFQYNSESGARAVKLKVNDS--QAVPSE--FS 157 (367)
T ss_pred CCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccccCCccCCCCCeEeEEEEecCC--CCCCce--eE
Confidence 999999999998776531 22 12111111 22222222221111 122333 55
Q ss_pred EEeeccCccc---cCCCCcEEEEEeCC--------CcEEEEE--ECCCcEEEEecCCCCCCC
Q 039743 135 VWMSHGDEAV---VLPDGFEVVARSQQ--------GAVAAVE--NREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 135 v~~~H~~~v~---~lp~g~~vla~s~~--------~~v~ai~--~~~~~i~gvQFHPE~~~~ 183 (531)
++.+.+-... +.+.+.+++|...+ ...++|. ..+++++-+-.|||.+..
T Consensus 158 ~yynGG~~Fv~~~~~~~~v~vLA~Y~~~~~v~~~~~~aAvV~c~vGkG~aiLsG~HpE~~~~ 219 (367)
T PF09825_consen 158 SYYNGGGVFVDADKYDKNVEVLARYEDDLDVPGGEGKAAVVYCKVGKGRAILSGPHPEFSPS 219 (367)
T ss_pred EEECCceEEeCccccCCCeEEEEEEecCCCCCCCCCCcEEEEEEeCCceEEEEecccccChh
Confidence 5554333221 22468899998755 2334443 356778999999999863
No 219
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.10 E-value=0.0029 Score=60.87 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=53.7
Q ss_pred HHHHHHHCCCEEEEEeCC---------------------------------CChhccccCCCCEEEEcCCCCCC---CC-
Q 039743 21 ITRRIRSLSILSLCLSGT---------------------------------CSLDDITAKNPRVVILSGGPHSV---HS- 63 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~---------------------------------~~~~~~~~~~~dgiIlsGGp~s~---~~- 63 (531)
....|+++|+++.+.... ..++++...+||+|+||||.+.. ++
T Consensus 22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~ 101 (213)
T cd03133 22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF 101 (213)
T ss_pred HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence 458899999998886541 11222224469999999996531 11
Q ss_pred ---CCCCC---ChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 64 ---PDAPA---FPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 64 ---~~~~~---~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
....+ ...++++.+.++++||.+||.|-++|+.+.+
T Consensus 102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 00011 1246777888899999999999999998764
No 220
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=96.94 E-value=0.0057 Score=58.07 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=53.8
Q ss_pred CEEEEEeC-CCCc--HHHHHHHHHHCCCEEEEEeCCC------------------ChhccccCCCCEEEEcCCCCCCCCC
Q 039743 6 ELVLILDY-GSQY--THLITRRIRSLSILSLCLSGTC------------------SLDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 6 ~~I~IlD~-G~~~--~~~i~r~l~~~G~~~~v~~~~~------------------~~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
+||+|+=+ |.+- .......++++|..+.+..... .++++...++|.|+++||+......
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~ 82 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECF 82 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhh
Confidence 45676632 3222 2234578888887766643211 1112212368999999996432211
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQ 96 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~ 96 (531)
........+++.+.+++.+|.+||-|..+|..
T Consensus 83 ~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 83 RDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred hhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 11111345677777889999999999997654
No 221
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.89 E-value=0.0033 Score=56.39 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=57.9
Q ss_pred CEEEEEeCCCCc---HHHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCC-CCC
Q 039743 6 ELVLILDYGSQY---THLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHS-PDA 66 (531)
Q Consensus 6 ~~I~IlD~G~~~---~~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~-~~~ 66 (531)
.+|+|+=+.+-. .......++.+|.++.++..+.. +++....++|+|+++||...... ...
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~ 81 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS 81 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence 357777443322 23456888889999887754321 11111225899999999763211 111
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+ ...++++.+.+++.||.+||-|-.+|+.+
T Consensus 82 ~-~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 82 G-RALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred h-HHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 1 13456677777899999999999999984
No 222
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.013 Score=59.24 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCcccccceecccccCCHHH
Q 039743 312 FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDE 388 (531)
Q Consensus 312 ~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~e 388 (531)
....+..+|.+.| ++.++.|++..|+.+... -.|.| -.|-+.-.+-.-...-..++++||+++.+.|
T Consensus 184 k~kll~~vA~~~g------~~~i~~g~~~t~la~~vlt~v~~GRG----~sis~~v~~~d~r~~~d~~llrPLrDl~~~E 253 (396)
T KOG2594|consen 184 KMKLLQKVAAENG------YNRIVLGDSTTDLASHVLTAVVKGRG----GSISTDVQVVDKRPKGDVKLLRPLRDLLSLE 253 (396)
T ss_pred HHHHHHHHHHHcC------CCEEEecCchhHHHHHHHHHHHhccC----ccceehhhhhccccCCCceeehhHHHHHHHH
Confidence 3456777888777 899999999999876421 12322 1222211111111112478999999999999
Q ss_pred HHHHHHHcCCCc
Q 039743 389 VRQLGRILNVPE 400 (531)
Q Consensus 389 Vr~la~~lglp~ 400 (531)
|..|...-|++.
T Consensus 254 i~~y~~l~~l~~ 265 (396)
T KOG2594|consen 254 ITSYCLLDGLAY 265 (396)
T ss_pred HHHHHHhhcCCc
Confidence 999999999984
No 223
>PRK04155 chaperone protein HchA; Provisional
Probab=96.56 E-value=0.005 Score=62.03 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=38.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|+||||.+...+-.......++++++.++++||..||.|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 589999999997754332112224578888999999999999999877763
No 224
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=96.55 E-value=0.0024 Score=61.66 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEE-EE-eCCC---CChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCV-FV-DNGL---LRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v-~i-d~g~---~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|+++.+|||+||+.+++.+.+. .+|.++ ++ +... +...-..+..+..|+.+|||+..+..+..
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~---------- 69 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ--HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGD---------- 69 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT---EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-------------
T ss_pred cEEEEEcCcHHHHHHHHHHHHh--CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCc----------
Confidence 6889999999999999988886 566543 33 2221 11111112233367889999998877420
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP 380 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~P 380 (531)
.+. . .+-+.+..++++ .+.++.|.+..+-.- .-++ .+....+++.+.|
T Consensus 70 ~~~---~-----~~~l~~~l~~~~------v~~vv~GdI~~~~~r------------~~~e------~vc~~lGl~~~~P 117 (218)
T PF01902_consen 70 EED---Y-----VEDLKEALKELK------VEAVVFGDIDSEYQR------------NWVE------RVCERLGLEAVFP 117 (218)
T ss_dssp CCC---H-----HHHHHHHHCTC--------SEEE--TTS-HHHH------------HHHH------HHHHHCT-EEE-T
T ss_pred cch---h-----hHHHHHHHHHcC------CCEEEECcCCcHHHH------------HHHH------HHHHHcCCEEEec
Confidence 110 1 122333334444 788988887533110 0011 1222345679999
Q ss_pred cccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchHHHHHhh
Q 039743 381 LKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNSLDILRQ 432 (531)
Q Consensus 381 L~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l~~~~~~ 432 (531)
|=.....++-+-.-+.|+..-++.- ...+|--.++|. +|++-+ +.+.+
T Consensus 118 LW~~d~~~ll~e~i~~Gf~aiIv~V---~~~~L~~~~LGr~l~~e~i-~~L~~ 166 (218)
T PF01902_consen 118 LWGRDREELLREFIESGFEAIIVKV---DADGLDESFLGRELDRELI-EELPE 166 (218)
T ss_dssp TTT--HHHHHHHHHHTT-EEEEEEE---ESTT--GGGTT-B--HHHH-HHHHH
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEEE---eccCCChHHCCCCccHHHH-HHHHH
Confidence 9888877765544567886544332 223555666765 355544 44443
No 225
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=96.54 E-value=0.0044 Score=62.17 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=44.6
Q ss_pred chhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHH---hC-CcEEEEEEeCCCCChhHHHHHHHHH
Q 039743 208 NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKA---IG-DRLHCVFVDNGLLRYKERERVMDTF 274 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~---~g-~~v~~v~id~g~~~~~e~~~~~~~l 274 (531)
+..+..+++|.=.+..-.+|.|+||||+||.|+++|+++. .| .++..+|+|.--.-...++.+.+.+
T Consensus 11 nV~eA~~eRl~~if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~ 81 (407)
T COG3969 11 NVLEAAIERLEWIFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMR 81 (407)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHH
Confidence 3345555555544555579999999999999999999764 35 4788899995432233444555533
No 226
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=96.54 E-value=0.0061 Score=59.62 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|++|||....++-.......++++.+.++++||-.||.|-+.|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 479999999997654432222223468888889999999999999977764
No 227
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=96.43 E-value=0.0093 Score=54.49 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCEEEEEeCCC----------------ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 20 LITRRIRSLSILSLCLSGTC----------------SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~----------------~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
.....++.+|+++.++..+. ..++....++|.|+++||+..........-..++++.+.+++.+
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence 45678888888777654321 11111124789999999973211110111134566777778999
Q ss_pred EEEeeHHHHHHHHH
Q 039743 84 VLGICYGLQLMVQK 97 (531)
Q Consensus 84 vLGIC~G~Qlla~~ 97 (531)
|.+||-|..+|+++
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999986
No 228
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.33 E-value=0.02 Score=53.91 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=57.8
Q ss_pred CEEEEEeC-CCCcHHH--HHHHHHHCCCEEEEEeCCCC------------------hhccccCCCCEEEEcCC-CCCCCC
Q 039743 6 ELVLILDY-GSQYTHL--ITRRIRSLSILSLCLSGTCS------------------LDDITAKNPRVVILSGG-PHSVHS 63 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~--i~r~l~~~G~~~~v~~~~~~------------------~~~~~~~~~dgiIlsGG-p~s~~~ 63 (531)
.+|+|+-+ |..-... -...++++|..+.+...... .++....+||+|++||| .+..+.
T Consensus 3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~ 82 (188)
T COG0693 3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYL 82 (188)
T ss_pred ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhc
Confidence 45776643 3222222 34788899987776543321 11111247999999999 543332
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
... ....++++.+.++++||..||-|-++|+.+
T Consensus 83 ~~~-~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 83 RPD-PDLLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred cCc-HHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 211 223467778888899999999999999975
No 229
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.24 E-value=0.00095 Score=60.42 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 37 GTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 37 ~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+..++++...+||+||||||......-... .....+++.+.++++||.+||.|-.+|+.+
T Consensus 26 ~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 26 PDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp SSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 3455666666679999999998732211101 223467788888999999999999999885
No 230
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=96.07 E-value=0.0077 Score=58.48 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=37.8
Q ss_pred cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 46 AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..++|+|+|+||+...++-....-..++++.+.++++||.+||.|-++|+.+
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 3468999999997643222111123467777788899999999999999985
No 231
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.05 E-value=0.023 Score=52.61 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=35.8
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|+|+++||+..... ..+ ...++++.+.+++.+|.+||-|.++|+++
T Consensus 59 ~~~D~l~I~Gg~~~~~~-~~~-~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNP-EAP-DLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccC-CcH-HHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 46899999999752211 111 12456677777899999999999999985
No 232
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.02 E-value=0.014 Score=57.08 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=61.1
Q ss_pred CEEEEEeCCC------CcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-CCCChHHHHHHHH
Q 039743 6 ELVLILDYGS------QYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-APAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~------~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~~~~ 78 (531)
++|++|-.-+ .|...+-++++.+|+.+..+....+..+. ..+.|+|+++||-....-.. ..+-..+.++.+.
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~-l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~ 110 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAA-IENAEAIFVGGGNTFQLLKQLYERGLLAPIREAV 110 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHH-HhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHH
Confidence 5799995543 25666778888999987766543222111 46789999999966322110 0011234566667
Q ss_pred hCCCcEEEeeHHHHHHHHHcC
Q 039743 79 SNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~~G 99 (531)
++|+|+.|+|.|+-+++....
T Consensus 111 ~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 111 KNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HCCCEEEEECHHHHhhhccce
Confidence 889999999999988777543
No 233
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=95.80 E-value=0.023 Score=54.65 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=63.2
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCCEEEEEeCCC--Chhcc--ccCCCCEEEEcCCCCCCCCCC--CCCChHHHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSILSLCLSGTC--SLDDI--TAKNPRVVILSGGPHSVHSPD--APAFPAGFLE 75 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~~~~v~~~~~--~~~~~--~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~ 75 (531)
.+|++|...+ .|...+.+.++++|+..+.++... +.+++ ...+.|+|+++||-...+-.. .......+.+
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~ 109 (210)
T cd03129 30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILK 109 (210)
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHH
Confidence 6899998876 567788899999999888665432 11121 157889999999965321110 0123345555
Q ss_pred HHHhCCCcEEEeeHHHHHHHHH
Q 039743 76 WALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+. ++.|+.|+|.|+.++...
T Consensus 110 ~~~-~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 110 RVA-RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHH-cCCeEEEcCHHHHHhhhc
Confidence 555 799999999999999985
No 234
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=95.67 E-value=0.068 Score=56.20 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=37.3
Q ss_pred CcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHH----HHcCCC--ccccc
Q 039743 331 PAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLG----RILNVP--EQFLK 404 (531)
Q Consensus 331 ~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la----~~lglp--~~~~~ 404 (531)
...|+.|+.+-|. ...|+ -|++.-+. ..|.|+..++|.+.|.+. +++|+| ++++.
T Consensus 508 GglLVLGSaNVDE----~LrGY--------LTKYDCSS-------ADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~il~ 568 (706)
T KOG2303|consen 508 GGLLVLGSANVDE----SLRGY--------LTKYDCSS-------ADINPIGGISKTDLRRFLQYAKEKFGLPALQSILD 568 (706)
T ss_pred CceEEEecCccch----Hhhhh--------hhhccccc-------cccCCccCccHHHHHHHHHHHHHhcCchHHHHHhc
Confidence 4688899876653 22343 23332222 378999999999999865 367887 34444
Q ss_pred cCCCC
Q 039743 405 RHPFP 409 (531)
Q Consensus 405 ~~P~~ 409 (531)
..|.+
T Consensus 569 a~pTA 573 (706)
T KOG2303|consen 569 APPTA 573 (706)
T ss_pred CCCcc
Confidence 44433
No 235
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=95.46 E-value=0.14 Score=47.42 Aligned_cols=92 Identities=24% Similarity=0.324 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHH---HHHHHHHhCCCcEEEEECc-hHHHHhhcCCCC-cc-ccc
Q 039743 232 SGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERER---VMDTFEKDLHLPVTCVDAT-DQFLSKLKGVID-PE-TKR 305 (531)
Q Consensus 232 SGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~---~~~~la~~lgi~~~vvd~~-~~f~~~l~~~~~-p~-~kr 305 (531)
--|.||+.....|.+. |.++++.|.|....+..|-.. ..+.+|+.+||++.+-+.+ +.|+..+++..+ || .+|
T Consensus 6 CCaPCs~~~~~~L~~~-g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~~~e~epE~g~R 84 (176)
T PF02677_consen 6 CCAPCSTYPLERLREE-GFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVKGLEDEPEGGKR 84 (176)
T ss_pred cCccccHHHHHHHHHC-CCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHhhCccCCccCch
Confidence 3578999999888887 999999999998888776432 2345899999999888776 567788887764 33 234
Q ss_pred chhh-HHHHHHHHHHHHHhh
Q 039743 306 KIIG-KEFICIFDAFAHDLE 324 (531)
Q Consensus 306 ~~~~-~~~~~~~~~~a~~~g 324 (531)
|..| ..+.+.-.+.|+++|
T Consensus 85 C~~Cy~~RL~~tA~~A~e~g 104 (176)
T PF02677_consen 85 CRVCYDLRLEKTAQYAKELG 104 (176)
T ss_pred hHHHHHHHHHHHHHHHHHcC
Confidence 4443 334445556677766
No 236
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.31 E-value=0.035 Score=62.60 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=58.5
Q ss_pred CEEEEEeC-CCCc--HHHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQY--THLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~--~~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+||=+ |..- ...+...|++.|+.+.++..... +++.....||+|+|+||+.+...-...
T Consensus 598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d 677 (752)
T PRK11249 598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADN 677 (752)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhC
Confidence 46888733 3322 23466888999998888754311 111112258999999997532111001
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-...+++.+.++++||.+||-|.++|+.+
T Consensus 678 ~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 678 GDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred HHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 112456677778899999999999999974
No 237
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=95.10 E-value=0.33 Score=46.85 Aligned_cols=166 Identities=18% Similarity=0.097 Sum_probs=84.0
Q ss_pred EEEEEeCCC-Cc--------HHHHHHHHH-HCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 7 LVLILDYGS-QY--------THLITRRIR-SLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 7 ~I~IlD~G~-~~--------~~~i~r~l~-~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
||||+.-+. .+ ...+++.++ ..|+.+++.........-.+.++|.||+........ +.-..+.++.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l----~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDEL----TDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-----HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcC----CHHHHHHHHH
Confidence 578886552 22 334666676 467777664322222221257899999987653211 1112455666
Q ss_pred HHhCCCcEEEeeHHH-------HHHHHHcCCEEeecCcccceeeeEEEe-cCCccccCCCCCceEEEEeeccCccccCC-
Q 039743 77 ALSNGVYVLGICYGL-------QLMVQKLDGVVKVGEKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHGDEAVVLP- 147 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~-------Qlla~~~GG~v~~~~~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v~~lp- 147 (531)
..++|.+++|+..++ .-....+||.....+ ..+...+++. +++|+.++++.. +.+.--+ |.....|
T Consensus 77 ~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~--~~~~~~v~~~~~~HPi~~gl~~~--f~~~DE~-Y~~~~~~~ 151 (217)
T PF06283_consen 77 YVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHP--PPQPFTVRVEDPDHPITRGLPES--FTIYDEW-YYFLRDPR 151 (217)
T ss_dssp HHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEE--CEEEEEEEESSTTSCCCTTS-SE--EEEEEEE-EES-BS--
T ss_pred HHHcCCCEEEEcccccccchhHHHHHHeeCccccCCC--CCceEEEEEcCCCChhhcCCCCC--ceEcccc-cccccCCC
Confidence 677899999999554 224446787655433 4455556665 457999999766 5553221 1112233
Q ss_pred CCcEEEEEeCC---------C---cEEEEEECC-CcEE-EEecCCCCC
Q 039743 148 DGFEVVARSQQ---------G---AVAAVENRE-KRLF-GLQYHPEVT 181 (531)
Q Consensus 148 ~g~~vla~s~~---------~---~v~ai~~~~-~~i~-gvQFHPE~~ 181 (531)
++..+|+.... + ++.=....+ ++++ ....|.+.+
T Consensus 152 ~~~~vL~~~~~~~~~~~~~~~~~~Pv~W~~~~GkGRvf~~~lGH~~~~ 199 (217)
T PF06283_consen 152 PNVTVLLTADESSYDPEGGEGGDHPVAWTREYGKGRVFYTTLGHDEET 199 (217)
T ss_dssp -CEEEEEEEE--GGG--TTTSSEEEEEEEEECTTEEEEEE----TTSH
T ss_pred CCEEEEEEEEeccccccccCCCeEEEEEEEEeCCeeEEEECCCCChhh
Confidence 46888887651 1 333333322 4554 555587653
No 238
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=94.98 E-value=0.025 Score=52.64 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.3
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.|+++||+..............+++.+.+++.||.+||-|..+|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 468999999986321110001112356667777899999999999999985
No 239
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.0026 Score=62.16 Aligned_cols=204 Identities=20% Similarity=0.353 Sum_probs=121.0
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHH-HHHHHHhCCCcEEEEECchHHHHhhcCCC
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERV-MDTFEKDLHLPVTCVDATDQFLSKLKGVI 299 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~-~~~la~~lgi~~~vvd~~~~f~~~l~~~~ 299 (531)
+...++.+-++.|=.|.- -.+|.+|..++-+| +++.++. .++|++. .|-..+|.....-...++.-.
T Consensus 82 VdA~~~Fl~~L~GvtDPE----~KRKiIG~~FI~VF-------e~ea~k~~~~~LaQG-TiYpDvIES~~g~~~~IKSHH 149 (315)
T COG0519 82 VDAKDRFLSALKGVTDPE----EKRKIIGREFIEVF-------EEEAKKLGAEFLAQG-TIYPDVIESGTGKAGTIKSHH 149 (315)
T ss_pred EchHHHHHHHhcCCCCHH----HHHHHHHHHHHHHH-------HHHHHhCCcceEEec-ccccceeeecCCCCCcccccc
Confidence 344567777888888987 66777786655444 1121111 1223332 355555655410001111111
Q ss_pred C----cc-cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 300 D----PE-TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 300 ~----p~-~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
| |+ .+-+++ ++++.+|+++.+++|..+| +..+++.+.+|+|| +..|+. +|.+.+ ..
T Consensus 150 NVGGLP~~m~lkLv-EPLr~LfKDEVR~lg~~LG----------lp~~iv~RhPFPGP----GLaiRi---lGevt~-Ek 210 (315)
T COG0519 150 NVGGLPEDMKLKLV-EPLRELFKDEVRELGRELG----------LPEEIVYRHPFPGP----GLAVRI---LGEVTR-EK 210 (315)
T ss_pred ccCCCccccceeee-HHHHHHhHHHHHHHHHHhC----------CCHHHhccCCCCCC----CeEEEe---ecccCH-HH
Confidence 1 44 455556 7888999999999986655 57778888999999 456665 444432 34
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCC-----------CccccccCC---CCcc----hHHHHHhhhhHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGP-----------GLAVRVLGD---VTEG----NSLDILRQVDEI 436 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p-----------~la~r~~g~---vt~~----~l~~~~~~~d~~ 436 (531)
+.++|--..++.+|+++.+.+..+.+.+.--.|...- -.++|.... .|.+ .. +.|+.+...
T Consensus 211 l~ilR~Ad~I~~eEl~~agly~~~wQaFavll~vksvGV~GD~RtY~~~valRaV~s~D~MTa~~~~lp~-~~L~~is~R 289 (315)
T COG0519 211 LEILREADAIVEEELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPY-DVLEKISNR 289 (315)
T ss_pred HHHHHHHhHHHHHHHHhcCcchhhhHHHhhccccceeeecCCCcccCceEEEEEEecccccccccccCCH-HHHHHHHHH
Confidence 5567766668899999866666666655555553321 123444322 1322 33 567888888
Q ss_pred HHHHHHHcC--cccccccceee
Q 039743 437 FIQSIKEAG--LYDLIWQAFAV 456 (531)
Q Consensus 437 ~~~~l~~~~--~~~~~~q~~~v 456 (531)
+.+++.+.+ +|+-.++.|+.
T Consensus 290 I~nEv~~V~RVvYDItsKPPaT 311 (315)
T COG0519 290 ITNEVPGVNRVVYDITSKPPAT 311 (315)
T ss_pred hhhcCCCcceEEeeCCCCCCCC
Confidence 888887765 66666666664
No 240
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.61 E-value=0.063 Score=50.73 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=35.7
Q ss_pred CCCCEEEEcCCCCCCC--CCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVH--SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~--~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.|+++||+.... ..........+++.+.+++.+|.+||-|..+|+++
T Consensus 68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 4789999999875421 01111112356666677899999999999999984
No 241
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=94.31 E-value=0.13 Score=53.73 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=27.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCC--cEEEEEEe
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGD--RLHCVFVD 258 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~--~v~~v~id 258 (531)
..+|.|.||||+||+|+|++++..+.. .+..+.+-
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVa 286 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVA 286 (520)
T ss_pred cCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEee
Confidence 368999999999999999999998763 34444443
No 242
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.28 E-value=0.38 Score=44.66 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=71.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHH---HHHHHHHHhCCCcEEEEEC-c-hHHHHhhcCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERE---RVMDTFEKDLHLPVTCVDA-T-DQFLSKLKGV 298 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~---~~~~~la~~lgi~~~vvd~-~-~~f~~~l~~~ 298 (531)
..++++=.--+.||+-++--+.+. |.+++..|-|....+..|-+ +..+.+|+++||++.--|. + +.|+..++|.
T Consensus 3 ~~kiLlH~CCAPcs~y~le~l~~~-~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~vKg~ 81 (204)
T COG1636 3 RPKLLLHSCCAPCSGYVLEKLRDS-GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFERVKGM 81 (204)
T ss_pred CCeeEEEeecCCCcHHHHHHHHhc-CcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHHHhhcc
Confidence 357888888889999999888887 88999999888888776633 2234589999999877777 3 3488889998
Q ss_pred CC-cc-cccchhhHH-HHHHHHHHHHHhh
Q 039743 299 ID-PE-TKRKIIGKE-FICIFDAFAHDLE 324 (531)
Q Consensus 299 ~~-p~-~kr~~~~~~-~~~~~~~~a~~~g 324 (531)
.+ || .+||.+|=- +.+.-...|+++|
T Consensus 82 E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G 110 (204)
T COG1636 82 EDEPEGGKRCTMCFDMRLEKTAKKAKELG 110 (204)
T ss_pred hhCCCCCchhHhHHHHHHHHHHHHHHHcC
Confidence 76 33 355544432 3345556677776
No 243
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=94.11 E-value=0.12 Score=49.56 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=48.4
Q ss_pred HHHHHHCCCEEEEEeCCC----------------ChhccccCCCCEEEEcCC-CCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 22 TRRIRSLSILSLCLSGTC----------------SLDDITAKNPRVVILSGG-PHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 22 ~r~l~~~G~~~~v~~~~~----------------~~~~~~~~~~dgiIlsGG-p~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
...||+.|+.+.+...+. ...+....+||.|||||| |++.+-.+. ....++++...+.+.+|
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~-~~v~~lvK~q~~~gkLI 103 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSEC-EKVVDLVKEQAESGKLI 103 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhc-HHHHHHHHHHHhcCCeE
Confidence 578889999888754321 122222467999999999 764322221 23346777777779999
Q ss_pred EEeeHHHHHHHHH
Q 039743 85 LGICYGLQLMVQK 97 (531)
Q Consensus 85 LGIC~G~Qlla~~ 97 (531)
..||.|- +++.+
T Consensus 104 aaICaap-~~al~ 115 (247)
T KOG2764|consen 104 AAICAAP-LTALA 115 (247)
T ss_pred EEeecch-HHHHh
Confidence 9999974 44443
No 244
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.63 E-value=0.17 Score=47.41 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=35.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.|+++||......... .-..+.++...+++.+|.+||-|.++|+++
T Consensus 63 ~~~D~liipGg~~~~~~~~~-~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPP-PALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCC-HHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 46899999999664211111 112345566667799999999999999985
No 245
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=91.87 E-value=0.38 Score=45.00 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.||++||...... ......++++...+++..|.+||-|..+|+++
T Consensus 63 ~~~D~liipgg~~~~~~--~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 63 PPLDYLFVVGGLGARRA--VTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCCEEEEeCCCCcccc--CCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 46899999999653211 11112356666667899999999999999984
No 246
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=91.69 E-value=0.27 Score=45.77 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=34.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..+|+|+++||+........ ....++++.+.+++.||.++|-|..+|+.+
T Consensus 61 ~~~D~lvipgg~~~~~~~~~-~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 61 PDLDVLLVPGGGGTRALVND-PALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCEEEECCCcchhhhccC-HHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 36899999999653211111 112345566667899999999999999884
No 247
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=90.92 E-value=1.7 Score=45.83 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=100.7
Q ss_pred CEEEEE-e--CCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC--ChHHHHHHHHhC
Q 039743 6 ELVLIL-D--YGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA--FPAGFLEWALSN 80 (531)
Q Consensus 6 ~~I~Il-D--~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~--~~~~l~~~~~~~ 80 (531)
.||+|. | |---|. .-.+.||++|++++...+-.+ +++ ..+.|+|.|+||.--.+.+.... -...-++.+.+.
T Consensus 246 ~rIAVA~D~AF~FyY~-~nl~~Lr~~GAelv~FSPL~D-~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~ 322 (451)
T COG1797 246 VRIAVARDAAFNFYYP-ENLELLREAGAELVFFSPLAD-EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAA 322 (451)
T ss_pred ceEEEEecchhccccH-HHHHHHHHCCCEEEEeCCcCC-CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHc
Confidence 378887 2 222333 356789999998877654332 223 33589999999965333221111 112344556677
Q ss_pred CCcEEEeeHHHHHHHHHc---CCEEeec----------Cc--ccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 81 GVYVLGICYGLQLMVQKL---DGVVKVG----------EK--QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~---GG~v~~~----------~~--~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|+||+|=|-|+--|++.+ .|....+ .. ..+|...++...++++.. -... ++-.-+|.-.+..
T Consensus 323 G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~~~~~~~d~~~~~-~G~~--irGHEFHyS~~~~ 399 (451)
T COG1797 323 GKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYREAEAVDDTLLLR-AGEK--IRGHEFHYSRLIT 399 (451)
T ss_pred CCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhccceeEEEecCCccccc-CCce--eeeeeeeeeeccc
Confidence 999999999999888865 2222221 11 247777777766665543 2333 5666667655544
Q ss_pred CCCCcEEEEE--eCCCc---EEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 146 LPDGFEVVAR--SQQGA---VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 146 lp~g~~vla~--s~~~~---v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
.++ .+.... ..++. -.++. .++++|.=.|-=... ...+.++|+ ..|
T Consensus 400 ~~~-~~~a~~~~~g~g~~~~~~G~~--~gnv~asY~H~H~~s---~~~~~~~~v-~~~ 450 (451)
T COG1797 400 EED-AEPAFRVRRGDGIDNGRDGYR--SGNVLASYLHLHFAS---NPAFAARFV-AAA 450 (451)
T ss_pred CCc-CceeeeeecccCcccccccee--eCCeEEEEEeeeccc---CHHHHHHHH-Hhh
Confidence 442 222221 11221 23444 257777777653322 245777776 444
No 248
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=7.9 Score=37.02 Aligned_cols=129 Identities=14% Similarity=0.087 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCcc----cceeeeEEEe---c
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQ----EYGRMEILVE---R 119 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~----e~G~~~v~~~---~ 119 (531)
++-..+|+|||..-+|-........+.+....++|--.||||.|. .||+.......+ -.|..++.+= .
T Consensus 48 ~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~veF~~p~~~~vvgkRdL~fFpGT~ 122 (253)
T COG4285 48 ETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYVEFAEPTGIEVVGKRDLGFFPGTA 122 (253)
T ss_pred hceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceEEEEecCCCceeeecccccccCCcc
Confidence 345789999998876655332333344455566688999999985 567665543211 1122222221 1
Q ss_pred CCccccC------------------CCCCceEEEEeeccCccc--cCCCCcEEEEEeCCC--cEEEEE---ECCCcEEEE
Q 039743 120 SSGIFGN------------------KKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQG--AVAAVE---NREKRLFGL 174 (531)
Q Consensus 120 ~~~l~~~------------------~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~--~v~ai~---~~~~~i~gv 174 (531)
.+|.+.+ .... ...+++-+-... +-=++.+++|+.++- .-+||. ..++.+.-.
T Consensus 123 ~GP~y~gF~Y~S~~GaRaa~l~~~d~~~~--~~~~FNGG~~F~~aE~~~~v~I~ArY~e~~~~pAAIV~~~vgkG~vvLs 200 (253)
T COG4285 123 RGPAYAGFSYNSESGARAAPLKFNDFLGD--CYAYFNGGGYFEDAENYPNVEIEARYEELPGKPAAIVSCTVGKGLVVLS 200 (253)
T ss_pred CCCccCCccccCcccceeeeeeeCCCccc--eEEEEcCceEEeccCCCCCcEEEEehhcCCCCceeEEEEEecCccEEEe
Confidence 2233333 2222 334443332221 122468899987543 234543 245678878
Q ss_pred ecCCCCCC
Q 039743 175 QYHPEVTH 182 (531)
Q Consensus 175 QFHPE~~~ 182 (531)
=.|||..+
T Consensus 201 GpH~Ey~p 208 (253)
T COG4285 201 GPHPEYLP 208 (253)
T ss_pred cCChhhch
Confidence 89999876
No 249
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=89.36 E-value=0.78 Score=44.36 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=60.2
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCCE-EEEEeCCC----Chhcc--ccCCCCEEEEcCCCCCCCCCC-CCCChHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSIL-SLCLSGTC----SLDDI--TAKNPRVVILSGGPHSVHSPD-APAFPAGF 73 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~~-~~v~~~~~----~~~~~--~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l 73 (531)
.+|++|...+ .+...+.+.++++|+. +..+..+. +.+++ ...+.|+|+++||-...+-.. ...-....
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~ 109 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDA 109 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHH
Confidence 5799998876 4566788888999985 44443331 11111 156789999999965321110 01112345
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
++.+.+++.|+.|+--|+-+++..
T Consensus 110 l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHcCCEEEEccHHHHhhhhc
Confidence 666677899999999999988764
No 250
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=89.03 E-value=0.23 Score=45.54 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..+|.||++||+.. .....+......++...+++.+|.+||-|..+|+++
T Consensus 60 ~~~D~lvvpg~~~~-~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGF-DAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTH-HHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCc-hhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 56899999999871 000111111234444456789999999999999996
No 251
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.49 E-value=1.1 Score=45.41 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEe-CCCCc----HHHHHHHHHHCCCEEEEEeCCCC-----------hhccccCCCCEEEEcCCCCCCCCC
Q 039743 1 MENKPELVLILD-YGSQY----THLITRRIRSLSILSLCLSGTCS-----------LDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 1 ~~~~~~~I~IlD-~G~~~----~~~i~r~l~~~G~~~~v~~~~~~-----------~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
|.++|.+|+|+- .+... ...+.++|++.|+.+.+.+.... .+++ ..++|.+|.-||-++.
T Consensus 1 ~~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDGT~--- 76 (292)
T PRK03378 1 MNNHFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDGNM--- 76 (292)
T ss_pred CCccCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcHHH---
Confidence 677778888883 33333 34577788889988876542110 0111 2357999999996632
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
....+.+...++|||||-.|.
T Consensus 77 ------L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 77 ------LGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ------HHHHHHhcCCCCeEEEEECCC
Confidence 223333334589999999886
No 252
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=87.67 E-value=1.2 Score=45.55 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.||+|||..... ...+. ..++++...+++.+|.|||-|.-+|+.+
T Consensus 74 ~~~D~livpGg~~~~~-~~~~~-l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 74 DRADTIVIPGWRGPDA-PVPEP-LLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCCEEEECCCCcccc-cCCHH-HHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 4689999999865321 11111 2245555556789999999999999984
No 253
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=87.00 E-value=5.3 Score=38.20 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=41.8
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC-ChhHHH---------HHHHHHHHhCCCcEEEEECc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL-RYKERE---------RVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~-~~~e~~---------~~~~~la~~lgi~~~vvd~~ 288 (531)
|++..+|||+||-....-+.+. |-+++|+--=+.-- ..+|.. ++...+++-+++|+..-.+.
T Consensus 2 rvvaLiSGGKDScynmm~cv~~-gHeiVaLanl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~i~ 73 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCVRL-GHEIVALANLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRRIR 73 (277)
T ss_pred cEEEEEeCChHHHHHHHHHHHc-CCeeeeeecccCCcccchhHHHHHHHhhhHHHHHHHHHHhcCceeeeecc
Confidence 5788999999999888777775 88888875322211 112322 23355778889998877664
No 254
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.93 E-value=5.4 Score=40.49 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEe-CCCCc----HHHHHHHHHHCCCEEEEEeCCCC----------------hhccccCCCCEEEEcCCCC
Q 039743 1 MENKPELVLILD-YGSQY----THLITRRIRSLSILSLCLSGTCS----------------LDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 1 ~~~~~~~I~IlD-~G~~~----~~~i~r~l~~~G~~~~v~~~~~~----------------~~~~~~~~~dgiIlsGGp~ 59 (531)
|-+.|.+|+|+- .+... ...+.++|++.|+.+.+.+.... .+++ ..++|.+|.-||-+
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG 79 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTEL-GQYCDLVAVLGGDG 79 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhc-CcCCCEEEEECCcH
Confidence 555677788883 34333 34567788889998877532111 0111 23579999999965
Q ss_pred CCCCCCCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 60 SVHSPDAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 60 s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
+. ....+.+...++|||||=.|.
T Consensus 80 T~---------L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 TF---------LSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred HH---------HHHHHHhcccCCCEEEEecCC
Confidence 32 223333334589999998875
No 255
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=83.17 E-value=4.6 Score=40.93 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEe-CCCCc----HHHHHHHHHHCCCEEEEEeCCC-----------ChhccccCCCCEEEEcCCCCCCCCC
Q 039743 1 MENKPELVLILD-YGSQY----THLITRRIRSLSILSLCLSGTC-----------SLDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 1 ~~~~~~~I~IlD-~G~~~----~~~i~r~l~~~G~~~~v~~~~~-----------~~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
|.+++++|+|+- .+... ...+++++++.|+.+.+..... +.+++ ..++|.+|.-||-+++
T Consensus 1 ~~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~--- 76 (291)
T PRK02155 1 MKSQFKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDGTM--- 76 (291)
T ss_pred CCCcCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcHHH---
Confidence 667777888873 34322 4567788888998876643211 01111 2357999999996642
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
...++.....++|+|||=.|.
T Consensus 77 ------l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 77 ------LGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ------HHHHHHhcCCCCCEEEEcCCC
Confidence 233344334589999998775
No 256
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=82.96 E-value=2.7 Score=41.60 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=58.8
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCC-EEEEEeCCC----Chhc-c-ccCCCCEEEEcCCCCCCCCCC-CCCChHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSI-LSLCLSGTC----SLDD-I-TAKNPRVVILSGGPHSVHSPD-APAFPAGF 73 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~-~~~v~~~~~----~~~~-~-~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l 73 (531)
++|++|-..| .|...+.+.++.+|+ .+.++.... +.++ + ...+.|+|+++||-...+-.. ..+-....
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~ 108 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDR 108 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHH
Confidence 5899996544 234567788889998 466665532 1111 1 156789999999965221110 01123356
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
++.+.+++.|+.|+-.|+-+|+..
T Consensus 109 l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 109 LRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHHHcCCeEEEccHHHHhcccc
Confidence 666677899999999999888653
No 257
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.60 E-value=6 Score=34.56 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=46.0
Q ss_pred EEEEE---eCCCCcHHHHHHHHHHCCCEEE------------EEeCCCChhccc-cCCCCEEEEcCCCCCCCCCCCCCCh
Q 039743 7 LVLIL---DYGSQYTHLITRRIRSLSILSL------------CLSGTCSLDDIT-AKNPRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 7 ~I~Il---D~G~~~~~~i~r~l~~~G~~~~------------v~~~~~~~~~~~-~~~~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
+|+.+ .+...|.++++-++|....+.. +.++....++.. ....|.++|.||-..+.-...|.-.
T Consensus 28 ki~fvG~~GvCtPFAeL~~favRDke~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvVLlGGLaMP~~gv~~d~~ 107 (154)
T COG4090 28 KIVFVGCPGVCTPFAELLAFAVRDKEQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVVLLGGLAMPKIGVTPDDA 107 (154)
T ss_pred eEEEecCCcccccHHHHHHHHhhchheeecCCcChhHhheeeeeccceecCCccccccccEEEEEcccccCcCCCCHHHH
Confidence 44444 3445678888888886543321 222222222222 3448999999998755333333333
Q ss_pred HHHHHHHHhCCCcEEEeeH
Q 039743 71 AGFLEWALSNGVYVLGICY 89 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~ 89 (531)
+++++. ..+.|+.|+|+
T Consensus 108 kel~ee--~~~kkliGvCf 124 (154)
T COG4090 108 KELLEE--LGNKKLIGVCF 124 (154)
T ss_pred HHHHHh--cCCCceEEeeH
Confidence 455552 24668999996
No 258
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=82.42 E-value=4.8 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=20.6
Q ss_pred CEEEEEeCCCCc--HHH----HHHHHHH-CCCEEEEEeCC
Q 039743 6 ELVLILDYGSQY--THL----ITRRIRS-LSILSLCLSGT 38 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~----i~r~l~~-~G~~~~v~~~~ 38 (531)
++|+|+- +|.| +.. +++.+++ .|++++++...
T Consensus 2 ~kilIvy-~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLY-YSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEE-cCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 4788884 4434 444 4555666 78898887653
No 259
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.77 E-value=7.3 Score=39.37 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=47.7
Q ss_pred CCCEEEEEeC-CCCc---HHHHHHHHHHCCCEEEEEeCCCC--------hhccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 4 KPELVLILDY-GSQY---THLITRRIRSLSILSLCLSGTCS--------LDDITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 4 ~~~~I~IlD~-G~~~---~~~i~r~l~~~G~~~~v~~~~~~--------~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
+|++|+|+-. +.+- ...+.+++++.|+.+.+-+.... .+++ ..++|.+|.-||-++. .
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDGT~---------L 78 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDEL-FKISDFLISLGGDGTL---------I 78 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhc-ccCCCEEEEECCCHHH---------H
Confidence 3567888833 3211 33466778888988877543211 1111 2357999999996532 2
Q ss_pred HHHHHHHhCCCcEEEeeHHH
Q 039743 72 GFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~G~ 91 (531)
...+.+...++|||||=.|.
T Consensus 79 ~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 79 SLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHHHHhcCCCCcEEEEeCCC
Confidence 33344444589999999886
No 260
>PRK06756 flavodoxin; Provisional
Probab=78.75 E-value=9.4 Score=34.13 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=28.6
Q ss_pred CEEEEE-eCCCCcHHHHHH----HHHHCCCEEEEEeCCCChhccccCCCCEEEEc
Q 039743 6 ELVLIL-DYGSQYTHLITR----RIRSLSILSLCLSGTCSLDDITAKNPRVVILS 55 (531)
Q Consensus 6 ~~I~Il-D~G~~~~~~i~r----~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIls 55 (531)
++|+|+ .-..+++..+++ .+++.|+.+++.+...........++|+|||.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~g 56 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILG 56 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEE
Confidence 467777 223445665554 45566888887765332111113578988874
No 261
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.79 E-value=5.4 Score=40.67 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=47.0
Q ss_pred CEEEEEeC-CCC----cHHHHHHHHHHCCCEEEEEeCCCC-------------------h-hccccCCCCEEEEcCCCCC
Q 039743 6 ELVLILDY-GSQ----YTHLITRRIRSLSILSLCLSGTCS-------------------L-DDITAKNPRVVILSGGPHS 60 (531)
Q Consensus 6 ~~I~IlD~-G~~----~~~~i~r~l~~~G~~~~v~~~~~~-------------------~-~~~~~~~~dgiIlsGGp~s 60 (531)
++|+|+-. +.. ....+.++|++.|+.+.+...... . +++ ..++|.+|.-||-++
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDGT 84 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDGT 84 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCHH
Confidence 56888833 332 245677888899998877542110 0 111 235799999999663
Q ss_pred CCCCCCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
. ....+.+...++|||||=.|.
T Consensus 85 ~---------L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 85 I---------LRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred H---------HHHHHHhccCCCcEEEEecCC
Confidence 2 233344445689999998763
No 262
>PRK09271 flavodoxin; Provisional
Probab=75.73 E-value=16 Score=33.24 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=27.5
Q ss_pred EEEEEeCCCCc--HHH----HHHHHHHCCCEEEEEeCCC-Chhcc--ccCCCCEEEEcC
Q 039743 7 LVLILDYGSQY--THL----ITRRIRSLSILSLCLSGTC-SLDDI--TAKNPRVVILSG 56 (531)
Q Consensus 7 ~I~IlD~G~~~--~~~----i~r~l~~~G~~~~v~~~~~-~~~~~--~~~~~dgiIlsG 56 (531)
+|+|+ |+|++ +.. +++.+++.|+.+.+...+. +..++ ...++|+|+|..
T Consensus 2 kv~Iv-Y~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 2 RILLA-YASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred eEEEE-EEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 56666 55544 444 4455567788887765432 22221 134678888743
No 263
>PRK05568 flavodoxin; Provisional
Probab=75.11 E-value=24 Score=31.04 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=32.1
Q ss_pred CEEEEE-eCCCCcHHHHHHHHH----HCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCC
Q 039743 6 ELVLIL-DYGSQYTHLITRRIR----SLSILSLCLSGTCS-LDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~Il-D~G~~~~~~i~r~l~----~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~ 59 (531)
.+++|+ .-+.++++.+++++. +.|+.+++++.... ..+ ..++|+|+| |.|.
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~--~~~~d~iil-gsp~ 58 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDD--VKGADVVAL-GSPA 58 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHH--HHhCCEEEE-ECCc
Confidence 455665 446667777776654 46888888876542 223 367898887 4443
No 264
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.97 E-value=12 Score=38.15 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=46.0
Q ss_pred CCEEEEEeC-CCC----cHHHHHHHHHHCCCEEEEEeCCC--------------------ChhccccCCCCEEEEcCCCC
Q 039743 5 PELVLILDY-GSQ----YTHLITRRIRSLSILSLCLSGTC--------------------SLDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD~-G~~----~~~~i~r~l~~~G~~~~v~~~~~--------------------~~~~~~~~~~dgiIlsGGp~ 59 (531)
|++|+|+-. +.. ....+.++|++.|+.+.+.+... +.+++ ..++|.+|.-||-+
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDG 79 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGGDG 79 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc-ccCcCEEEEEeCcH
Confidence 456888743 322 24456778888999887754210 00111 23579999999965
Q ss_pred CCCCCCCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 60 SVHSPDAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 60 s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
+. ....+.+...++|||||=.|
T Consensus 80 Tl---------L~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 80 TV---------LSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred HH---------HHHHHHhcCCCCcEEEEeCC
Confidence 32 23334444568999999776
No 265
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=73.24 E-value=4.4 Score=34.30 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.4
Q ss_pred eecccccCCHHHHHHHHHHcCCCc
Q 039743 377 LIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 377 ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
=|+||..+++.||..+|...|||.
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~ 26 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKV 26 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCc
Confidence 479999999999999999999994
No 266
>PRK07308 flavodoxin; Validated
Probab=71.47 E-value=20 Score=31.97 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=30.2
Q ss_pred CEEEEEeCCCCc--HHHHH----HHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCC
Q 039743 6 ELVLILDYGSQY--THLIT----RRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~----r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~ 59 (531)
.+|.|+ |+|.+ +..+| +.+++.|+.+++.+.+. +.++ ..++|+||+ |.|.
T Consensus 2 ~~~~Iv-Y~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~--l~~~d~vi~-g~~t 58 (146)
T PRK07308 2 ALAKIV-YASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASD--FEDADIAIV-ATYT 58 (146)
T ss_pred ceEEEE-EECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhH--hccCCEEEE-EeCc
Confidence 357776 55544 55555 55566788888776543 2233 356799998 5443
No 267
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=71.29 E-value=3.1 Score=35.38 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=25.3
Q ss_pred cccceecccccCCHHHHHHHHHHcCCCc
Q 039743 373 MKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 373 ~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
..+.+++||+++.+.||..|++..+++.
T Consensus 30 ~~i~~~rPLRd~l~kEi~~Y~~~~~l~~ 57 (107)
T PF10288_consen 30 WDIKIIRPLRDLLKKEIAFYNRLCGLES 57 (107)
T ss_pred CCceEEeehHhCCHHHHHHHHHHhCcch
Confidence 3567999999999999999999999984
No 268
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.95 E-value=7.4 Score=39.43 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=45.5
Q ss_pred EEEEE-eCCCC----cHHHHHHHHHHCCCEEEEEeCCCC-----------------hhccccCCCCEEEEcCCCCCCCCC
Q 039743 7 LVLIL-DYGSQ----YTHLITRRIRSLSILSLCLSGTCS-----------------LDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 7 ~I~Il-D~G~~----~~~~i~r~l~~~G~~~~v~~~~~~-----------------~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
+|+|+ ..+.. ....+.++|++.|+.+.+-+.... .+++ ...+|.+|.-||-++.
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~lGGDGT~--- 77 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEEL-DGSADMVISIGGDGTF--- 77 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhc-ccCCCEEEEECCcHHH---
Confidence 46776 32332 244577788889998877542110 0111 2357999999996632
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
....+.+...++|||||=.|.
T Consensus 78 ------L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 78 ------LRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred ------HHHHHHhcCCCCCEEEEecCC
Confidence 233344444589999998874
No 269
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=70.93 E-value=6.8 Score=35.68 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=32.7
Q ss_pred EEEEEeCCCCc--HH----HHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEc
Q 039743 7 LVLILDYGSQY--TH----LITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILS 55 (531)
Q Consensus 7 ~I~IlD~G~~~--~~----~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIls 55 (531)
++||+ |++.+ ++ -+|..|++.|..|++.+...-. ++...+||.+||.
T Consensus 2 k~LIl-Ystr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~-~~~l~~ydavVIg 54 (175)
T COG4635 2 KTLIL-YSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVE-EPALEDYDAVVIG 54 (175)
T ss_pred ceEEE-EecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhh-ccChhhCceEEEe
Confidence 57776 44444 33 4667788999999998765433 2446789999994
No 270
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=69.47 E-value=1.4 Score=40.08 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHCCCEEEEEeCCCC-hhccc--cCCCCEEEEcCCCCCCCCCC-CCCChHHHHHHHHhCCCcEEEeeHHHH
Q 039743 17 YTHLITRRIRSLSILSLCLSGTCS-LDDIT--AKNPRVVILSGGPHSVHSPD-APAFPAGFLEWALSNGVYVLGICYGLQ 92 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~--~~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~~~~~~~iPvLGIC~G~Q 92 (531)
|...+-+.++++|+.+..++.... .+++. ..+.|+|+++||-...+-.. ...-....++.+.++|.|+.|+-.|+-
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~ 80 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAM 80 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHh
Confidence 456677899999999888776542 22221 35789999999954211000 001123566666778999999999985
Q ss_pred H
Q 039743 93 L 93 (531)
Q Consensus 93 l 93 (531)
+
T Consensus 81 i 81 (154)
T PF03575_consen 81 I 81 (154)
T ss_dssp C
T ss_pred h
Confidence 5
No 271
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.19 E-value=18 Score=32.51 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=51.9
Q ss_pred CEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhccc----cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 6 ELVLILDYGSQY----THLITRRIRSLSILSLCLSGTCSLDDIT----AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 6 ~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~~~----~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
++|+|.-.|..- ...+++++++.|+++...+...+.+++. ..+.|.|.+|+=.+ ....+.+.+++.+
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g-----~h~~l~~~lve~l 87 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDG-----GHLTLVPGLVEAL 87 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccc-----hHHHHHHHHHHHH
Confidence 678888665221 5568999999999999887766666642 56889999986322 2223346777777
Q ss_pred HhCCC-cEEEee
Q 039743 78 LSNGV-YVLGIC 88 (531)
Q Consensus 78 ~~~~i-PvLGIC 88 (531)
.++|. .++.+|
T Consensus 88 re~G~~~i~v~~ 99 (143)
T COG2185 88 REAGVEDILVVV 99 (143)
T ss_pred HHhCCcceEEee
Confidence 77653 444444
No 272
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.14 E-value=18 Score=36.88 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=46.4
Q ss_pred CCCEEEEE-eCCCCc----HHHHHHHHHHCCCEEEEEeCCCCh---h---ccccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 4 KPELVLIL-DYGSQY----THLITRRIRSLSILSLCLSGTCSL---D---DITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 4 ~~~~I~Il-D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~---~---~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
+|++|+++ ..|... ...+.++|++.|+.+.+.+..... . ......+|.+|.-||-+++ ..
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~---------l~ 72 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTV---------LA 72 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHH---------HH
Confidence 35667766 445433 335667788899988775532211 0 1112357999999996642 23
Q ss_pred HHHHHHhCCCcEEEeeH
Q 039743 73 FLEWALSNGVYVLGICY 89 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~ 89 (531)
..+.....++|++||=.
T Consensus 73 ~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 73 AARHLAPHDIPILSVNV 89 (305)
T ss_pred HHHHhccCCCCEEEEec
Confidence 33433345899999987
No 273
>PRK06703 flavodoxin; Provisional
Probab=69.12 E-value=18 Score=32.36 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=27.9
Q ss_pred CEEEEE-eCCCCcHHHHHHH----HHHCCCEEEEEeCCCC-hhccccCCCCEEEE
Q 039743 6 ELVLIL-DYGSQYTHLITRR----IRSLSILSLCLSGTCS-LDDITAKNPRVVIL 54 (531)
Q Consensus 6 ~~I~Il-D~G~~~~~~i~r~----l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIl 54 (531)
++|+|+ .-..+++..+|+. +++.|+.+.+...+.. ..+ ..++|.|||
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~--l~~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEE--LLAYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHH--HhcCCcEEE
Confidence 456666 2234446655544 5567888887765432 223 357788888
No 274
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=68.93 E-value=15 Score=34.82 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEEeCCCCc--HHHHHHHHH----HC-CCEEEEEeC
Q 039743 7 LVLILDYGSQY--THLITRRIR----SL-SILSLCLSG 37 (531)
Q Consensus 7 ~I~IlD~G~~~--~~~i~r~l~----~~-G~~~~v~~~ 37 (531)
+|+|+ |+|.| +..+++++. +. |++++++..
T Consensus 2 kilIi-Y~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 2 KVLVL-YYSMYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred eEEEE-EeCCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 57887 44444 555665444 44 888888765
No 275
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=67.48 E-value=69 Score=27.02 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=50.2
Q ss_pred ceeeccCCCCCHHHHHHHHHH---HhCCcEEEEEEeCCCCC--hhH----HHHHHHHHHHhCCCcEEEEECchHHHHhhc
Q 039743 226 HVICALSGGVDSTVAATLVHK---AIGDRLHCVFVDNGLLR--YKE----RERVMDTFEKDLHLPVTCVDATDQFLSKLK 296 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k---~~g~~v~~v~id~g~~~--~~e----~~~~~~~la~~lgi~~~vvd~~~~f~~~l~ 296 (531)
+++++++|.-.|.-+..++.+ ..+..++.+|+..+... .++ .+.+.+ .+++.+++..++..
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~--------- 70 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALR-LAEELGAEVVTLPG--------- 70 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHH-HHHHcCCEEEEEeC---------
Confidence 578999988777766555432 24789999998765431 112 222233 34555554332211
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCC
Q 039743 297 GVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYP 341 (531)
Q Consensus 297 ~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~ 341 (531)
.+| .+.+.+++++.+ ++.|+.|++..
T Consensus 71 --~~~-----------~~~I~~~~~~~~------~dllviG~~~~ 96 (124)
T cd01987 71 --DDV-----------AEAIVEFAREHN------VTQIVVGKSRR 96 (124)
T ss_pred --CcH-----------HHHHHHHHHHcC------CCEEEeCCCCC
Confidence 112 234555677766 89999998643
No 276
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.97 E-value=22 Score=35.78 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=46.7
Q ss_pred EEEEE-eCCCCc----HHHHHHHHHHCCCEEEEEeCCCC----h-----hccccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 7 LVLIL-DYGSQY----THLITRRIRSLSILSLCLSGTCS----L-----DDITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 7 ~I~Il-D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~----~-----~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
||+|+ ..|.+. ...++++|++.|+.+.+.+.... . ..+...++|.+|..||-++. ..
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTl---------L~ 72 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTI---------LR 72 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHH---------HH
Confidence 46666 345434 34567788889998887642110 0 11212468999999996642 23
Q ss_pred HHHHHHhCCCcEEEeeHHH
Q 039743 73 FLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~G~ 91 (531)
..+ ....++||+||=.|.
T Consensus 73 a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 73 IEH-KTKKDIPILGINMGT 90 (277)
T ss_pred HHH-hcCCCCeEEEEeCCC
Confidence 344 344589999998875
No 277
>PRK05569 flavodoxin; Provisional
Probab=66.62 E-value=46 Score=29.22 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCEEEEEe-CCCCcHHHHHHHHHH----CCCEEEEEeCCC-ChhccccCCCCEEEEcCCCC
Q 039743 5 PELVLILD-YGSQYTHLITRRIRS----LSILSLCLSGTC-SLDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD-~G~~~~~~i~r~l~~----~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~ 59 (531)
|.+|+|+= -+.+++..+++++.+ .|+.+++.+... +..+ ..++|+||| |.|.
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~--~~~~d~iil-gsPt 58 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVED--VLEADAVAF-GSPS 58 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHH--HhhCCEEEE-ECCC
Confidence 34677773 255667777766554 688888877543 2223 357899888 4443
No 278
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.43 E-value=18 Score=36.67 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=49.1
Q ss_pred CCCCCCEEEEE-eCCCCc----HHHHHHHHHHCCCEEEEEeCCCC--------h---hccccCCCCEEEEcCCCCCCCCC
Q 039743 1 MENKPELVLIL-DYGSQY----THLITRRIRSLSILSLCLSGTCS--------L---DDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 1 ~~~~~~~I~Il-D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~--------~---~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
|++ |.+|+|+ ..+... ...+.+++++.|+.+.+.+.... . ..+ ..++|-+|.-||-+++
T Consensus 1 ~~~-~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~--- 75 (295)
T PRK01231 1 MPS-FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDGSL--- 75 (295)
T ss_pred CCC-CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcHHH---
Confidence 554 4567777 334433 44567778888998887653210 0 111 2357889999996643
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
....+.+...++|||||=.|.
T Consensus 76 ------l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 76 ------LGAARALARHNVPVLGINRGR 96 (295)
T ss_pred ------HHHHHHhcCCCCCEEEEeCCc
Confidence 233344444689999998874
No 279
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=66.28 E-value=88 Score=29.85 Aligned_cols=151 Identities=21% Similarity=0.139 Sum_probs=84.1
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCC-CcEEEEECch-----HHHHhhcCC-
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLH-LPVTCVDATD-----QFLSKLKGV- 298 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lg-i~~~vvd~~~-----~f~~~l~~~- 298 (531)
-+..++||--| .|+.-++++. |..+-.+++|++..-++.. .....+.+++| +++++.--+. .|.++ .+.
T Consensus 48 ~~q~a~~G~~~-lvlid~~~~~-~~~~~l~~idT~~~~PeT~-~l~d~VekkY~~i~I~~~~pd~~e~ea~~~~K-~~~~ 123 (261)
T KOG0189|consen 48 LFQTAASGLEG-LVLIDMLSKT-GRPFRLFFIDTLHHFPETL-RLFDAVEKKYGNIRIHVYFPDAVEVEALFASK-GGFS 123 (261)
T ss_pred HHHHHhccccc-hHHHHHHHHc-CCCceeEEeeccccChHHH-HHHHHHHHhcCceEEEEEcchhHHHHHHHHhc-cchh
Confidence 46678888766 4555666765 8888899999998765433 33444667887 8877764432 22221 111
Q ss_pred --CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccc
Q 039743 299 --IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLK 376 (531)
Q Consensus 299 --~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ 376 (531)
.+...++|.+.+. +=+.+.-+.++ .....+|.-.+. ..+ ++ ...|- .+....++-
T Consensus 124 ~~E~~~q~~~~l~KV--~P~~RA~k~L~------v~A~~TGrRksQ-~gt----Rs----elpiV------qvD~~fell 180 (261)
T KOG0189|consen 124 LWEDDHQEYDRLRKV--EPARRAYKGLN------VKAVFTGRRKSQ-GGT----RS----ELPIV------QVDPVFELL 180 (261)
T ss_pred heecCchhhhhhhhc--cHHHHHhhccc------eeeEEecccccC-CCc----cc----ccceE------EecCcccee
Confidence 2334444443222 11122222222 456778874332 211 11 00010 111112233
Q ss_pred eecccccCCHHHHHHHHHHcCCCcccc
Q 039743 377 LIEPLKLLFKDEVRQLGRILNVPEQFL 403 (531)
Q Consensus 377 ii~PL~~l~K~eVr~la~~lglp~~~~ 403 (531)
-+.||.++.=++|..+.+..++|..-+
T Consensus 181 K~NPlaN~~~~dV~nyi~t~nVP~NeL 207 (261)
T KOG0189|consen 181 KINPLANWEFNDVWNYIRTNNVPYNEL 207 (261)
T ss_pred eecccccccHHHHHHHHHhcCCcHHHH
Confidence 578999999999999999999996433
No 280
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=66.11 E-value=25 Score=35.46 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=45.2
Q ss_pred CEEEEEeCCCCc---------HHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCCCCCCCCCCChHHHHH
Q 039743 6 ELVLILDYGSQY---------THLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLE 75 (531)
Q Consensus 6 ~~I~IlD~G~~~---------~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~ 75 (531)
.+|+|+ +|++. ...+.++|+++|+++.++..+..... +...++|.++..-+.. ++.+ .....+++
T Consensus 5 ~~v~~~-~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~--~~~~--~~~~~~le 79 (304)
T PRK01372 5 GKVAVL-MGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGR--GGED--GTIQGLLE 79 (304)
T ss_pred cEEEEE-eCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCC--CCCc--cHHHHHHH
Confidence 468876 45443 35688999999999999876644332 3345789888652211 1111 11233433
Q ss_pred HHHhCCCcEEEee
Q 039743 76 WALSNGVYVLGIC 88 (531)
Q Consensus 76 ~~~~~~iPvLGIC 88 (531)
. .++|++|-.
T Consensus 80 ~---~gi~~~g~~ 89 (304)
T PRK01372 80 L---LGIPYTGSG 89 (304)
T ss_pred H---cCCCccCCC
Confidence 3 489998864
No 281
>PRK08105 flavodoxin; Provisional
Probab=65.96 E-value=25 Score=31.73 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCEEEEEeCCCCc--HHH----HHHHHHHCCCEEEEEeCC
Q 039743 5 PELVLILDYGSQY--THL----ITRRIRSLSILSLCLSGT 38 (531)
Q Consensus 5 ~~~I~IlD~G~~~--~~~----i~r~l~~~G~~~~v~~~~ 38 (531)
|.+|.|+ |||+. ++. +++.+++.|+.+.+.+.+
T Consensus 1 m~~i~I~-YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~ 39 (149)
T PRK08105 1 MAKVGIF-VGTVYGNALLVAEEAEAILTAQGHEVTLFEDP 39 (149)
T ss_pred CCeEEEE-EEcCchHHHHHHHHHHHHHHhCCCceEEechh
Confidence 3467777 77765 444 556667789998887653
No 282
>PRK10490 sensor protein KdpD; Provisional
Probab=65.10 E-value=50 Score=39.02 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=43.8
Q ss_pred ccceeeccCCCCCHHHHHHHH---HHHhCCcEEEEEEeCCC---CChhHH---HHHHHHHHHhCCCcEEEEECc
Q 039743 224 EDHVICALSGGVDSTVAATLV---HKAIGDRLHCVFVDNGL---LRYKER---ERVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~---~k~~g~~v~~v~id~g~---~~~~e~---~~~~~~la~~lgi~~~vvd~~ 288 (531)
.++++|++||+-.|.-+.--. ++.++.+++++|++++. ....+. .+..+ +|+.+|.+..++..+
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~lGa~~~~~~~~ 322 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQELGAETATLSDP 322 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHcCCEEEEEeCC
Confidence 468999999998886554332 33357899999999763 222222 22334 899999998777654
No 283
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=64.43 E-value=6.5 Score=37.62 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=55.0
Q ss_pred CEEEEE-eCCCC-----cHHHHHHHHHHCCCEEEEEeCCC-Chhccc--cCCCCEEEEcCCCCCC-CCCCCCCChHHHHH
Q 039743 6 ELVLIL-DYGSQ-----YTHLITRRIRSLSILSLCLSGTC-SLDDIT--AKNPRVVILSGGPHSV-HSPDAPAFPAGFLE 75 (531)
Q Consensus 6 ~~I~Il-D~G~~-----~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~--~~~~dgiIlsGGp~s~-~~~~~~~~~~~l~~ 75 (531)
++|+.| +.+.. |.+-..++++.+|+.+.=++... +.+++. +.+.|.|.+.||---- ...-..+-..++++
T Consensus 33 ~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr 112 (224)
T COG3340 33 KTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIR 112 (224)
T ss_pred ceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHH
Confidence 468888 33322 45566788889999888776543 444443 4568999999884310 00001122346777
Q ss_pred HHHhCCCcEEEeeHHH
Q 039743 76 WALSNGVYVLGICYGL 91 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~ 91 (531)
...++|+|..|+-.|.
T Consensus 113 ~~vk~G~~YiG~SAGA 128 (224)
T COG3340 113 ERVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHHcCCceEEeccCc
Confidence 7888899999998664
No 284
>PRK09004 FMN-binding protein MioC; Provisional
Probab=64.40 E-value=32 Score=30.91 Aligned_cols=46 Identities=15% Similarity=0.318 Sum_probs=28.5
Q ss_pred CCEEEEEeCCCCc--HHH----HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEE
Q 039743 5 PELVLILDYGSQY--THL----ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVIL 54 (531)
Q Consensus 5 ~~~I~IlD~G~~~--~~~----i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIl 54 (531)
|.+|.|+ |||+. ++. +++.+++.|+.+.++... +.+++ .+.|.+|+
T Consensus 1 M~~i~I~-ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~-~~~~l--~~~~~li~ 52 (146)
T PRK09004 1 MADITLI-SGSTLGGAEYVADHLAEKLEEAGFSTETLHGP-LLDDL--SASGLWLI 52 (146)
T ss_pred CCeEEEE-EEcCchHHHHHHHHHHHHHHHcCCceEEeccC-CHHHh--ccCCeEEE
Confidence 4568887 77765 444 446666789988876543 24444 34566655
No 285
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.99 E-value=19 Score=36.13 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCEEEEEeCCC-----------ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 19 HLITRRIRSLSILSLCLSGTC-----------SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~-----------~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
..+.+++++.|+.+.+-+... +.+++ ..++|.+|.-||-++. ....+.+...++|||||
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~iGGDGT~---------L~aa~~~~~~~~PilgI 72 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEI-GQRAQLAIVIGGDGNM---------LGRARVLAKYDIPLIGI 72 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHh-CcCCCEEEEECCcHHH---------HHHHHHhccCCCcEEEE
Confidence 457788999999887754221 01112 2357999999996532 22333333458999999
Q ss_pred eHH
Q 039743 88 CYG 90 (531)
Q Consensus 88 C~G 90 (531)
=.|
T Consensus 73 n~G 75 (272)
T PRK02231 73 NRG 75 (272)
T ss_pred eCC
Confidence 877
No 286
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=61.98 E-value=41 Score=28.81 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=44.7
Q ss_pred EEEEEeCCCCc--HHHHHHHHHHCCCEEEEEeCCCChh-ccc-cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 7 LVLILDYGSQY--THLITRRIRSLSILSLCLSGTCSLD-DIT-AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~IlD~G~~~--~~~i~r~l~~~G~~~~v~~~~~~~~-~~~-~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
+|.++-.|+++ .+.+..++..+|..+.......... .+. ...-|.+|+..-.+. ..-..+.++.+.+++.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~------t~~~~~~~~~a~~~g~ 75 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGE------TDELLNLLPHLKRRGA 75 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCC------CHHHHHHHHHHHHCCC
Confidence 57788777666 3445666777888777653221111 111 122355555433221 1113467788888999
Q ss_pred cEEEeeH
Q 039743 83 YVLGICY 89 (531)
Q Consensus 83 PvLGIC~ 89 (531)
|+++|+-
T Consensus 76 ~vi~iT~ 82 (128)
T cd05014 76 PIIAITG 82 (128)
T ss_pred eEEEEeC
Confidence 9999985
No 287
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=61.22 E-value=3.9 Score=36.64 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=46.5
Q ss_pred CEEEEE---eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc----------------ccCCCCEEEEcCCCCCCCCCCC
Q 039743 6 ELVLIL---DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI----------------TAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 6 ~~I~Il---D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~----------------~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
++|+.+ .+...|.++++-.+|+.+.+-..+|... .++. ...++|.++|.||-..+...-.
T Consensus 20 ~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d-~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAMP~~~v~ 98 (147)
T PF09897_consen 20 EKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDAD-LEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAMPKSGVT 98 (147)
T ss_dssp SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT--GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGSTTTS--
T ss_pred CeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCC-hhhhheeeccCcccccccccCCCCCCEEEEEcccccCCCCCC
Confidence 566665 3445668899999999988877777532 2221 1234899999999775543322
Q ss_pred CCChHHHHHHHHhCCCcEEEeeH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICY 89 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~ 89 (531)
+.-..++++... ...+.|||+
T Consensus 99 ~e~v~~li~ki~--~~~iiGiCF 119 (147)
T PF09897_consen 99 PEDVNELIKKIS--PKKIIGICF 119 (147)
T ss_dssp HHHHHHHHHHHE--EEEEEEEEE
T ss_pred HHHHHHHHHHhC--cCCEEEEeh
Confidence 221234444432 334999996
No 288
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=60.78 E-value=73 Score=29.19 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=34.2
Q ss_pred CEEEEEeCC-------CCcHHHHHHHHHHCCCEEEEEeC-CCChhcc----c----cCCCCEEEEcCCCC
Q 039743 6 ELVLILDYG-------SQYTHLITRRIRSLSILSLCLSG-TCSLDDI----T----AKNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G-------~~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~----~----~~~~dgiIlsGGp~ 59 (531)
.+++||=.| +.+...++.++++.|+.+..+.. .++.+.+ . ..++|.||.+||-+
T Consensus 5 ~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 5 LRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred cEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 466666222 34466789999999987764432 2233322 1 13689999999966
No 289
>PLN02929 NADH kinase
Probab=59.08 E-value=21 Score=36.28 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
...+.+.|++.|+++..+.. .+..+ ...++|.+|.-||-++. ....+.+ ..++|||||=.|
T Consensus 36 ~~~~~~~L~~~gi~~~~v~r-~~~~~-~~~~~Dlvi~lGGDGT~---------L~aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 36 VNFCKDILQQKSVDWECVLR-NELSQ-PIRDVDLVVAVGGDGTL---------LQASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHHcCCEEEEeec-ccccc-ccCCCCEEEEECCcHHH---------HHHHHHc-CCCCcEEEEECC
Confidence 34577889999998865432 12111 13567999999996632 2233334 558999999877
No 290
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.80 E-value=58 Score=31.58 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=41.8
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|+.+.|.. .+.+.+++.|..+.+.....+.+. +...++||+|+.++.. . ...+++.+.++
T Consensus 8 ~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~----~-----~~~~~~~~~~~ 78 (269)
T cd06281 8 DITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDE----R-----DPELVDALASL 78 (269)
T ss_pred CCccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCC----C-----cHHHHHHHHhC
Confidence 66666633 456778889999887755433321 2245799999976521 1 12345555567
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 79 ~ipvV~i 85 (269)
T cd06281 79 DLPIVLL 85 (269)
T ss_pred CCCEEEE
Confidence 8999766
No 291
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=57.20 E-value=59 Score=35.23 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=46.7
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|++.+++|||+.-| +..-.+.+.++++|.++..+-.+.+.......-.|-.+..|++.. ++ ...-...+++.+.+.
T Consensus 1 ~~~~~~~vLi~~~g-eia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~--~~-~y~d~~~i~~~a~~~ 76 (467)
T PRK12833 1 MPSRIRKVLVANRG-EIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHA--AK-SYLNPAAILAAARQC 76 (467)
T ss_pred CCCCCcEEEEECCc-HHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCc--cc-cccCHHHHHHHHHHh
Confidence 78888999999644 567789999999999988664332221111122466664443321 11 111124677777766
Q ss_pred CCc
Q 039743 81 GVY 83 (531)
Q Consensus 81 ~iP 83 (531)
++-
T Consensus 77 ~~d 79 (467)
T PRK12833 77 GAD 79 (467)
T ss_pred CCC
Confidence 653
No 292
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=57.17 E-value=36 Score=30.06 Aligned_cols=79 Identities=15% Similarity=-0.012 Sum_probs=35.5
Q ss_pred EEEEEeCCCC--cHHHHHHHHH----HCCCEEE-EEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 7 LVLILDYGSQ--YTHLITRRIR----SLSILSL-CLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 7 ~I~IlD~G~~--~~~~i~r~l~----~~G~~~~-v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
+++|+ |+|+ +++.+|+++. ..|+.++ +..... ........++|.|||.. |. .+....|.-...+++...
T Consensus 2 ~i~Ii-Y~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs-~t-~~~g~~p~~~~~fl~~l~ 78 (140)
T TIGR01754 2 RILLA-YLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGT-WT-WERGRTPDEMKDFIAELG 78 (140)
T ss_pred eEEEE-EECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEc-Ce-eCCCcCCHHHHHHHHHhc
Confidence 46666 4444 4666666654 4576665 222211 00011134678887743 32 122222322334555433
Q ss_pred hCCCcE--EEee
Q 039743 79 SNGVYV--LGIC 88 (531)
Q Consensus 79 ~~~iPv--LGIC 88 (531)
.+++.+ +|.|
T Consensus 79 ~~~k~~avfgtg 90 (140)
T TIGR01754 79 YKPSNVAIFGTG 90 (140)
T ss_pred ccCCEEEEEEcC
Confidence 344444 5544
No 293
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=56.56 E-value=64 Score=31.05 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
+.+.+++++.|..+.+.+...+.+ .+...++||||+.+... . ...++.+.++++|+.-+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~-----~~~~~~l~~~~ipvV~~ 84 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQ-----S-----AEQLEDLLKRGIPVVFV 84 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC-----C-----hHHHHHHHhCCCCEEEE
Confidence 346677888999988876543322 12256899999986432 1 12356667779998643
No 294
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=56.19 E-value=66 Score=31.03 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=41.0
Q ss_pred eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQY----THLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
+..+.| ...+.+++++.|..+.+...+.+.+. +...++||+|+.|... ....++.+.++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----------~~~~~~~l~~~ 77 (268)
T cd06273 8 TLDNAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH----------SPALLDLLARR 77 (268)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC----------CHHHHHHHHhC
Confidence 444444 33567888889998888654433221 2244789999975421 12445566667
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|++.+
T Consensus 78 ~iPvv~~ 84 (268)
T cd06273 78 GVPYVAT 84 (268)
T ss_pred CCCEEEE
Confidence 9999765
No 295
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.83 E-value=11 Score=43.11 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCcEEEeeHHHH
Q 039743 72 GFLEWALSNGVYVLGICYGLQ 92 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~G~Q 92 (531)
.+++.+.+++-||=|||+=.|
T Consensus 42 tli~rFdeHdGpVRgv~FH~~ 62 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPT 62 (1202)
T ss_pred hHHhhhhccCCccceeeecCC
Confidence 577888899999999997443
No 296
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=55.78 E-value=55 Score=31.72 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=38.3
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
+.+.+++++.|..+.+.....+.+. +...++||||+.++-. ......++.+.++++|+..+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~--------~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA--------EVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh--------hhhHHHHHHHHHcCCCEEEe
Confidence 3466788889999888754333221 2245799999975321 11234556667779998755
No 297
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=55.44 E-value=17 Score=36.60 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEE
Q 039743 2 ENKPELVLILDYGSQYTHLITRRIRSLSILSLCL 35 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~ 35 (531)
+.++.+|+|+|+|. .+.|.++|+++.+.
T Consensus 55 pknPekVvv~D~ga------LD~ld~lGve~~~v 82 (320)
T COG4607 55 PKNPEKVVVLDLGA------LDTLDALGVEVVAV 82 (320)
T ss_pred cCCCceEEEecchh------hhhHHHhCCccccc
Confidence 45678999999994 77888999987776
No 298
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=55.43 E-value=76 Score=30.82 Aligned_cols=57 Identities=16% Similarity=0.038 Sum_probs=36.6
Q ss_pred HHHHHHHCCCEEEEEeCCCC-hhc----cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 21 ITRRIRSLSILSLCLSGTCS-LDD----ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~~-~~~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
+.+.+++.|+.+.+...+.+ ... +...++||||+.+... . ...++.+.+.++|+..+
T Consensus 32 i~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~----~------~~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 32 IADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHD----Q------DPLPERLAETGLPFVVW 93 (275)
T ss_pred HHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCC----C------hHHHHHHHhCCCCEEEE
Confidence 56777889999888765433 111 1135899999975422 1 13356666779999744
No 299
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=55.41 E-value=50 Score=32.10 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=41.0
Q ss_pred EEEE--eCCCCcHHH----HHHHHHHC---CCE--EEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 8 VLIL--DYGSQYTHL----ITRRIRSL---SIL--SLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 8 I~Il--D~G~~~~~~----i~r~l~~~---G~~--~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
|+++ |+...|... +.+.+++. |.. +.+...+.+.+. +...++||||+.+.-.. .
T Consensus 2 Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-------~- 73 (272)
T cd06300 2 IGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPT-------A- 73 (272)
T ss_pred eEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-------h-
Confidence 4444 566656444 44666677 873 444443333221 22458999999764210 0
Q ss_pred hHHHHHHHHhCCCcEEEe
Q 039743 70 PAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGI 87 (531)
....++.+.+.++|++.+
T Consensus 74 ~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 74 LNPVIEEACEAGIPVVSF 91 (272)
T ss_pred hHHHHHHHHHCCCeEEEE
Confidence 123556666779999876
No 300
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=54.74 E-value=73 Score=34.33 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=51.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh----------hccc----------cCCCCEEEEcCCCCCCCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL----------DDIT----------AKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~----------~~~~----------~~~~dgiIlsGGp~s~~~~ 64 (531)
.++|+|+-.|-+- ...++.|.+.|+.+.+..-+... +.+. ..++|.+|+|+|-. ++
T Consensus 7 ~~kv~V~GLG~sG-~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~--~~- 82 (448)
T COG0771 7 GKKVLVLGLGKSG-LAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIP--PT- 82 (448)
T ss_pred CCEEEEEeccccc-HHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCC--CC-
Confidence 4689999998654 46899999999988876533222 0100 12357777776643 11
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
..+++.+.+.++||+|- .++.....
T Consensus 83 ------~p~v~~A~~~gi~i~~d---ieL~~r~~ 107 (448)
T COG0771 83 ------HPLVEAAKAAGIEIIGD---IELFYRLS 107 (448)
T ss_pred ------CHHHHHHHHcCCcEEeH---HHHHHHhc
Confidence 12566777789999874 56655543
No 301
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=53.90 E-value=51 Score=29.72 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cC--CCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 16 QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AK--NPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~--~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
.+...+...+++.|+++..... .++.+++. .. .+|.||.+||-+. .+. .+..+.++.+.++.+|
T Consensus 20 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~-g~~---D~t~~al~~~~~~~l~ 92 (152)
T cd00886 20 RSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL-APR---DVTPEATRPLLDKELP 92 (152)
T ss_pred chHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC-CCC---cCcHHHHHHHhCCcCc
Confidence 3466789999999987665432 23333321 23 6899999998652 222 2334555554433333
No 302
>PRK01215 competence damage-inducible protein A; Provisional
Probab=53.80 E-value=54 Score=32.66 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCEEEEEeCCC---------CcHHHHHHHHHHCCCEEEEEe-CCCChhccc------cCCCCEEEEcCCCC
Q 039743 5 PELVLILDYGS---------QYTHLITRRIRSLSILSLCLS-GTCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD~G~---------~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
++++.||--|+ .+...++++|+++|+.+.... ..++.+.+. ..+.|.||++||-+
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 46777775554 336678999999999876443 223333221 34679999999966
No 303
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=53.67 E-value=76 Score=29.43 Aligned_cols=80 Identities=14% Similarity=-0.039 Sum_probs=41.4
Q ss_pred EEEEE-eCCCCcHHHHHHHHHHC---CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH--hC
Q 039743 7 LVLIL-DYGSQYTHLITRRIRSL---SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL--SN 80 (531)
Q Consensus 7 ~I~Il-D~G~~~~~~i~r~l~~~---G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~--~~ 80 (531)
+++|+ .-..++|..+|+++.+. |..+.+++...... ....++|.|||.+ |- |....+......++... -+
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~-~~l~~yD~vIlGs-pi--~~G~~~~~~~~fl~~~~~~l~ 77 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEE-PDLSDYDRVVIGA-SI--RYGHFHSALYKFVKKHATQLN 77 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCc-cCHHHCCEEEEEC-cc--ccCCcCHHHHHHHHHHHHHhC
Confidence 46666 33445577777665432 66788877653211 1246789987744 32 22222221223332211 14
Q ss_pred CCcEEEeeHH
Q 039743 81 GVYVLGICYG 90 (531)
Q Consensus 81 ~iPvLGIC~G 90 (531)
++|+.-.|-|
T Consensus 78 ~K~v~~F~v~ 87 (177)
T PRK11104 78 QMPSAFFSVN 87 (177)
T ss_pred CCeEEEEEec
Confidence 7788777766
No 304
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=53.33 E-value=55 Score=31.49 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=44.9
Q ss_pred eCCCCcHHH----HHHHHHHCCCEEEEE-eCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 12 DYGSQYTHL----ITRRIRSLSILSLCL-SGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~~G~~~~v~-~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
+.+..|... +.++.+++|..+.++ +...+.+. +...++||||+.....+ .....++.+.+
T Consensus 7 ~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~--------~~~~~l~~~~~ 78 (257)
T PF13407_consen 7 SMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD--------SLAPFLEKAKA 78 (257)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT--------TTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH--------HHHHHHHHHhh
Confidence 555656544 446667789999985 65544322 22568999999765321 12467788888
Q ss_pred CCCcEEEe
Q 039743 80 NGVYVLGI 87 (531)
Q Consensus 80 ~~iPvLGI 87 (531)
+|+||.-+
T Consensus 79 ~gIpvv~~ 86 (257)
T PF13407_consen 79 AGIPVVTV 86 (257)
T ss_dssp TTSEEEEE
T ss_pred cCceEEEE
Confidence 89999864
No 305
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=53.31 E-value=73 Score=30.61 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=37.3
Q ss_pred HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 20 LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.+.+++++.|..+.+.+.+.+.+ .+...++||||+.+...+ ...++.+.+.++|+..+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~----------~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT----------ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred HHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC----------HHHHHHHHhcCCCEEEE
Confidence 45577788999988876543322 122457999999764221 23445555669999876
No 306
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.08 E-value=44 Score=33.14 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=41.4
Q ss_pred EEEEEeC--CCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 7 LVLILDY--GSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 7 ~I~IlD~--G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
++.|..- ..+....+..++.+.|..+....... ....+.|.+|.-||-++ +++.+...++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~d~vi~iGGDGT------------~L~a~~~~~~Pi 65 (256)
T PRK14075 2 KLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA----SGKVTADLIIVVGGDGT------------VLKAAKKVGTPL 65 (256)
T ss_pred EEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc----cccCCCCEEEEECCcHH------------HHHHHHHcCCCE
Confidence 4555521 22335567778888887655432211 11346799999999653 233333338999
Q ss_pred EEeeHHH
Q 039743 85 LGICYGL 91 (531)
Q Consensus 85 LGIC~G~ 91 (531)
|||=.|.
T Consensus 66 lgin~G~ 72 (256)
T PRK14075 66 VGFKAGR 72 (256)
T ss_pred EEEeCCC
Confidence 9998774
No 307
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=53.08 E-value=67 Score=30.90 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=40.5
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|+.+.|.. .+.+.+++.|..+.+.....+.+ .+...++||+|+.+... ....++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----------~~~~~~~l~~~ 77 (268)
T cd06298 8 DITNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKI----------SEEHREEFKRS 77 (268)
T ss_pred CCcchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCC----------cHHHHHHHhcC
Confidence 66666644 34467778899988876543322 12256899999975422 12344555556
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|++-+
T Consensus 78 ~ipvV~~ 84 (268)
T cd06298 78 PTPVVLA 84 (268)
T ss_pred CCCEEEE
Confidence 8999544
No 308
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=53.07 E-value=55 Score=31.72 Aligned_cols=68 Identities=7% Similarity=0.100 Sum_probs=41.1
Q ss_pred eCCCCcHH----HHHHHHHH-CCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 12 DYGSQYTH----LITRRIRS-LSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~-~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
+..+.|.. -+.+.+++ .|+.+.+.....+.+. +...++||+|+.+...+ ....+++.+.+
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--------~~~~~~~~l~~ 79 (272)
T cd06301 8 NFDDNFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTA--------ATAPIVKAANA 79 (272)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchh--------hhHHHHHHHHH
Confidence 55555533 35567777 7888887654333221 22458999999754211 12345666677
Q ss_pred CCCcEEEe
Q 039743 80 NGVYVLGI 87 (531)
Q Consensus 80 ~~iPvLGI 87 (531)
.++|++.+
T Consensus 80 ~~iPvv~~ 87 (272)
T cd06301 80 AGIPLVYV 87 (272)
T ss_pred CCCeEEEe
Confidence 79999854
No 309
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.93 E-value=63 Score=31.34 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=41.4
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
++.+.|.. .+.+.+++.|..+.+.....+.+ .+...++||+|+.+.... .....++.+.+.
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~--------~~~~~l~~~~~~ 79 (277)
T cd06319 8 DLRIPFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSS--------AAVTLLKLAAQA 79 (277)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchh--------hhHHHHHHHHHC
Confidence 55566644 35567778898888765543321 122568999998653211 123455666777
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 80 ~ipvV~~ 86 (277)
T cd06319 80 KIPVVIA 86 (277)
T ss_pred CCCEEEE
Confidence 9999654
No 310
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.60 E-value=68 Score=31.28 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=41.1
Q ss_pred eCCCCcH----HHHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYT----HLITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
++.+.|. ..+.+++++.|..+.+.....+.+ .+...++||||+.+... ......++.+.++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~--------~~~~~~i~~~~~~ 79 (282)
T cd06318 8 TLNSPFFAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDP--------EGLVPAVAAAKAA 79 (282)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCc--------cchHHHHHHHHHC
Confidence 5555453 345677788999888766543322 12255799999975311 1123455666778
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 80 ~iPvV~~ 86 (282)
T cd06318 80 GVPVVVV 86 (282)
T ss_pred CCCEEEe
Confidence 9999644
No 311
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=52.41 E-value=75 Score=34.23 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=52.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC--hhccc--------------cCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS--LDDIT--------------AKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~--~~~~~--------------~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
++|+|+-.|..-...+++.|.+.|..+........ .+++. ..++|-||+|.|-. .
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~--------~- 78 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIP--------D- 78 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCC--------C-
Confidence 47999999987766689999999999887653321 11110 12466777766533 1
Q ss_pred hHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 70 PAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
....++.+.++++||++ -.+++....
T Consensus 79 ~~~~~~~a~~~~i~i~~---~~e~~~~~~ 104 (461)
T PRK00421 79 DNPELVAARELGIPVVR---RAEMLAELM 104 (461)
T ss_pred CCHHHHHHHHCCCcEEe---HHHHHHHHH
Confidence 11345667788999987 467766654
No 312
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.11 E-value=58 Score=31.58 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=43.4
Q ss_pred EEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCC--CChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 7 LVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGT--CSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 7 ~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~--~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
||+|+ |+.+.|... +.+++++.|..+.+...+ .+.+ .+...++||+|+.+... . ...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~----~----~~~ 72 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDA----K----ALV 72 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCCh----h----hhH
Confidence 35555 666666443 446677889988887532 2221 12245799999975421 1 112
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
+.++.+.+.++|+..+
T Consensus 73 ~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 73 PPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHHHCCCCEEEe
Confidence 4556666679999876
No 313
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=51.93 E-value=14 Score=30.59 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCcccEEEecCCCCCCCccc
Q 039743 497 KFLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530 (531)
Q Consensus 497 ~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~ 530 (531)
+.|.+-+...++.++|++.|-..++.+||-|++|
T Consensus 54 ~~l~~~i~~al~~l~gv~~v~v~i~~~~~~~~~~ 87 (99)
T TIGR02945 54 GSMPGEVENAVRAVPGVGSVTVELVWDPPWTPER 87 (99)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEEeeCCCChHH
Confidence 4455555554578899999999999999999998
No 314
>PRK03094 hypothetical protein; Provisional
Probab=50.73 E-value=41 Score=27.03 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=32.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV 61 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~ 61 (531)
|.||+|=. -...+...|++.|..++-+....+ ..++|++|++|-...+
T Consensus 1 ~~kIaVE~----~Ls~i~~~L~~~GYeVv~l~~~~~-----~~~~Da~VitG~d~n~ 48 (80)
T PRK03094 1 MAKIGVEQ----SLTDVQQALKQKGYEVVQLRSEQD-----AQGCDCCVVTGQDSNV 48 (80)
T ss_pred CCeEEeec----CcHHHHHHHHHCCCEEEecCcccc-----cCCcCEEEEeCCCcce
Confidence 35677642 233589999999998876542222 3568999999976643
No 315
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=50.28 E-value=62 Score=31.47 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=39.6
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCC--Chh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTC--SLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~--~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
++-+.|.. .+.+.+++.|..+.+...+. +.+ .+...++||||+.+...+ . ....++.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-------~-~~~~~~~~~ 79 (275)
T cd06320 8 TLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDV-------N-LVPAVERAK 79 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChH-------H-hHHHHHHHH
Confidence 45444533 35577778899888765321 211 122457999999654321 1 122345566
Q ss_pred hCCCcEEEe
Q 039743 79 SNGVYVLGI 87 (531)
Q Consensus 79 ~~~iPvLGI 87 (531)
++++|+..+
T Consensus 80 ~~~iPvV~~ 88 (275)
T cd06320 80 KKGIPVVNV 88 (275)
T ss_pred HCCCeEEEE
Confidence 779999865
No 316
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=50.08 E-value=67 Score=32.17 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCEEEEEeCCCC--hhc----cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh-CCCcEEEe
Q 039743 19 HLITRRIRSLSILSLCLSGTCS--LDD----ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS-NGVYVLGI 87 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~--~~~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-~~iPvLGI 87 (531)
..+.+.+++.|..+.+...... ..+ ....++|.||+.||-+++ .++++.+.. .+.|.+||
T Consensus 22 ~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl---------~~v~~~l~~~~~~~~lgi 88 (293)
T TIGR00147 22 REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI---------NEVVNALIQLDDIPALGI 88 (293)
T ss_pred HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH---------HHHHHHHhcCCCCCcEEE
Confidence 3466778888998887664332 111 113468999999997753 234443333 35677773
No 317
>PRK03673 hypothetical protein; Provisional
Probab=49.92 E-value=55 Score=34.72 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCEEEEEeCCC---------CcHHHHHHHHHHCCCEEEEEe-CCCChhccc------cCCCCEEEEcCCCC
Q 039743 5 PELVLILDYGS---------QYTHLITRRIRSLSILSLCLS-GTCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD~G~---------~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
|+++.||--|+ .+...+++.|+++|+.+.... ..++.+.+. ....|.||++||-+
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 34566665453 356779999999999876443 233444332 34689999999966
No 318
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.76 E-value=30 Score=31.54 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=37.7
Q ss_pred CCCCEEEEcCCCCCCCCC------C-CCCChHH---HHHHHHhCCCcEEEeeHHHHHHHHHcCCEE
Q 039743 47 KNPRVVILSGGPHSVHSP------D-APAFPAG---FLEWALSNGVYVLGICYGLQLMVQKLDGVV 102 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~------~-~~~~~~~---l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v 102 (531)
+.+|++|+|||.+....- . .-..+++ +.....+.++|+==||-.--++.+.+|-.+
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 357999999999843211 0 1123343 344445679999999999999998887544
No 319
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=49.66 E-value=1e+02 Score=29.84 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=42.6
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|+.+.|.. .+.+.+++.|..+.+.....+.+ .+...++||+|+.++.....+. ....++.+.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~-----~~~~~~~~~~~ 82 (273)
T cd01541 8 YISDYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNP-----NIDLYLKLEKL 82 (273)
T ss_pred CccchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccc-----cHHHHHHHHHC
Confidence 55555533 45677778899988765543332 2335689999997653221111 22455666677
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 83 ~ipvV~~ 89 (273)
T cd01541 83 GIPYVFI 89 (273)
T ss_pred CCCEEEE
Confidence 9998654
No 320
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=49.39 E-value=47 Score=26.73 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV 61 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~ 61 (531)
|+||+|=+ | ...+...|++.|+.++-+....+ ..++|++|++|-...+
T Consensus 1 MkkIAVE~-~---Ls~v~~~L~~~GyeVv~l~~~~~-----~~~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 1 MKKIAVEE-G---LSNVKEALREKGYEVVDLENEQD-----LQNVDAIVVTGQDTNM 48 (80)
T ss_pred CCeEEecC-C---chHHHHHHHHCCCEEEecCCccc-----cCCcCEEEEECCCccc
Confidence 46777754 2 23689999999988875432211 3578999999976644
No 321
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=49.12 E-value=70 Score=31.11 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=42.0
Q ss_pred eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQY----THLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
++.+.| .+.+.+..++.|..+.+...+.+.+. +...++||||+.+... . . ....++.+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~----~---~-~~~~i~~~~~~ 79 (273)
T cd06309 8 GAESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVE----T---G-WDPVLKEAKAA 79 (273)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcc----c---c-chHHHHHHHHC
Confidence 444445 44566777889999988765433321 2245799999975421 1 1 12345566677
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+..+
T Consensus 80 ~iPvV~~ 86 (273)
T cd06309 80 GIPVILV 86 (273)
T ss_pred CCCEEEE
Confidence 9999876
No 322
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=48.82 E-value=61 Score=31.25 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=41.2
Q ss_pred eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChh----c----cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 12 DYGSQY----THLITRRIRSLSILSLCLSGTCSLD----D----ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 12 D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~----~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
|..+.| ..-+.+++++.|..+.+...+...+ . +...++||||+.+... . ....++.+.+
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~-----~~~~~~~~~~ 78 (270)
T cd01545 8 NPSPGYVSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLS----D-----NPELLDLLDE 78 (270)
T ss_pred CCCcccHHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCC----C-----ccHHHHHHHh
Confidence 444445 3345677888999998886653322 1 2245789999985421 1 1234455566
Q ss_pred CCCcEEEe
Q 039743 80 NGVYVLGI 87 (531)
Q Consensus 80 ~~iPvLGI 87 (531)
.++|++-+
T Consensus 79 ~~ipvv~i 86 (270)
T cd01545 79 AGVPYVRI 86 (270)
T ss_pred cCCCEEEE
Confidence 79999765
No 323
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=48.72 E-value=56 Score=28.64 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=28.7
Q ss_pred CCcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 15 SQYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 15 ~~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
+.+...+..++++.|+.+..... .++.+.+. ..++|.||.+||-+
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 44566789999999986543221 12322221 24689999999866
No 324
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.25 E-value=31 Score=38.44 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=46.5
Q ss_pred CCEEEEEeC-CCCc----HHHHHHHHHHCCCEEEEEeCCCC-hh----c-----cccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQY----THLITRRIRSLSILSLCLSGTCS-LD----D-----ITAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 5 ~~~I~IlD~-G~~~----~~~i~r~l~~~G~~~~v~~~~~~-~~----~-----~~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
+++|+|+-. +... ...+.++|++.|+.+.+.+.... .. + ....++|.+|.-||-++.
T Consensus 290 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~-------- 361 (569)
T PRK14076 290 PTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTV-------- 361 (569)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHH--------
Confidence 467888833 4433 34567778888988776542110 00 0 002357999999996632
Q ss_pred hHHHHHHHHhCCCcEEEeeHHH
Q 039743 70 PAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
....+.+...++|||||=.|.
T Consensus 362 -L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 362 -LRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred -HHHHHHhcCCCCCEEEEcCCC
Confidence 223333344589999998874
No 325
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=47.97 E-value=1e+02 Score=29.58 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=40.4
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
++.+.|.. .+.+.+++.|..+.+.....+.+. +...++||||+.+... . ...++.+.+.
T Consensus 8 ~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~-----~-----~~~l~~~~~~ 77 (267)
T cd06283 8 DITNPFSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGN-----N-----KELYQRLAKN 77 (267)
T ss_pred CCccccHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCC-----C-----hHHHHHHhcC
Confidence 55555543 355777788988877665433221 2245799999976421 1 1224555667
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+..+
T Consensus 78 ~ipvV~~ 84 (267)
T cd06283 78 GKPVVLV 84 (267)
T ss_pred CCCEEEE
Confidence 9999765
No 326
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=47.84 E-value=41 Score=31.13 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHCCCEEEEEeC-CCChhc----cc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeH
Q 039743 17 YTHLITRRIRSLSILSLCLSG-TCSLDD----IT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICY 89 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~-~~~~~~----~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~ 89 (531)
+...++++|+++|+.+..... ..+.+. +. ...+|.||.+||-+...++ ...+.+..+. +.|+.+.=-
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D----~t~ea~~~~~--~~~l~~~~e 93 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDD----LTREAVAKAF--GRPLVLDEE 93 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCC----hHHHHHHHHh--CCCcccCHH
Confidence 456789999999987653321 222222 21 3468999999997632222 2344444332 677777666
Q ss_pred HHHHHHHHcC
Q 039743 90 GLQLMVQKLD 99 (531)
Q Consensus 90 G~Qlla~~~G 99 (531)
-.+.|-..+.
T Consensus 94 ~~~~i~~~~~ 103 (170)
T cd00885 94 ALERIEARFA 103 (170)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 327
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.47 E-value=97 Score=33.13 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hccc-----------------cCCCCEEEEcCCCCC
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDIT-----------------AKNPRVVILSGGPHS 60 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~-----------------~~~~dgiIlsGGp~s 60 (531)
|+-..++|+|+..|.. ....++.|.+.|..+.+....... +.+. ..++|.||.|.|-.
T Consensus 1 ~~~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~- 78 (445)
T PRK04308 1 MTFQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS- 78 (445)
T ss_pred CCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC-
Confidence 4433357999998853 345699999999988876533211 1110 01345555544422
Q ss_pred CCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
. ....+..+.++++|+++ -.|+++..
T Consensus 79 -------~-~~p~~~~a~~~~i~v~~---~~~~~~~~ 104 (445)
T PRK04308 79 -------E-RQPDIEAFKQNGGRVLG---DIELLADI 104 (445)
T ss_pred -------C-CCHHHHHHHHcCCcEEE---hHHHHHHh
Confidence 1 12356667788999986 36666654
No 328
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=47.16 E-value=1.5e+02 Score=28.12 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHCCCE---E--EEEeCCCChhc----cc--c--CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 17 YTHLITRRIRSLSIL---S--LCLSGTCSLDD----IT--A--KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~---~--~v~~~~~~~~~----~~--~--~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
+...++.++++.|.. + .++|. +.+. +. . .++|.||.+||-+-- + ..+.++.++.+.++.+|
T Consensus 24 ng~~L~~~L~~~G~~g~~v~~~iVpD--d~~~I~~aL~~a~~~~~~DlIITTGGtg~g--~--rDvTpeAv~~l~~keip 97 (193)
T PRK09417 24 GIPALEEWLASALTSPFEIETRLIPD--EQDLIEQTLIELVDEMGCDLVLTTGGTGPA--R--RDVTPEATLAVADKEMP 97 (193)
T ss_pred hHHHHHHHHHHcCCCCceEEEEECCC--CHHHHHHHHHHHhhcCCCCEEEECCCCCCC--C--CCcHHHHHHHHhCCcCC
Confidence 356788999999643 2 23333 2222 21 2 368999999996621 1 12344555655555555
No 329
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=47.14 E-value=1.1e+02 Score=29.27 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=41.5
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|..+.|.. .+.+.+++.|..+.+.+...+.+. +...++||||+.++.. .. ...++.+.++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~~-----~~~~~~~~~~ 78 (266)
T cd06282 8 SLANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADA----AT-----SPALDLLDAE 78 (266)
T ss_pred CCCcchHHHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----Cc-----hHHHHHHhhC
Confidence 55554433 455777888999988765433221 2245799999965421 11 1245666677
Q ss_pred CCcEEEee
Q 039743 81 GVYVLGIC 88 (531)
Q Consensus 81 ~iPvLGIC 88 (531)
++|++.+.
T Consensus 79 ~ipvV~~~ 86 (266)
T cd06282 79 RVPYVLAY 86 (266)
T ss_pred CCCEEEEe
Confidence 99998763
No 330
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.05 E-value=88 Score=30.87 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=43.3
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|+...|.. .+.+.+++.|..+.+.....+.+. +...++||||+.+...+ .....++.+.++
T Consensus 8 ~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~--------~~~~~l~~l~~~ 79 (288)
T cd01538 8 TKTEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGE--------ALASAVEKAADA 79 (288)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChh--------hHHHHHHHHHHC
Confidence 66555533 466777789999988866543321 22568999999763221 013456666677
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++||..+
T Consensus 80 ~ipvV~~ 86 (288)
T cd01538 80 GIPVIAY 86 (288)
T ss_pred CCCEEEE
Confidence 9999854
No 331
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=46.36 E-value=4.4 Score=27.46 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=11.3
Q ss_pred cEEEeeHHHHHHHHHcC
Q 039743 83 YVLGICYGLQLMVQKLD 99 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~G 99 (531)
-.-|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 35688999999987644
No 332
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=45.98 E-value=49 Score=30.33 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=31.0
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 253 HCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 253 ~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
..+++|+|....++..+..+.+|+.+++++++++.+..+++.
T Consensus 120 ~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~l~~l~~ 161 (166)
T PF07796_consen 120 RVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGDLDLLEK 161 (166)
T ss_pred eEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCCHHHHHH
Confidence 367889998766654444444899999999999998665544
No 333
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=45.20 E-value=70 Score=28.49 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 17 YTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
+...+..+|++.|+.+..... .++.+++. ..+.|.||.+||-+
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 355789999999998775432 23333321 24789999999965
No 334
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=44.99 E-value=1.2e+02 Score=29.20 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=41.1
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
++.+.|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+... + ...++.+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----~------~~~~~~~~~~ 77 (264)
T cd06274 8 DLENRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLP----P------DDPYYLCQKA 77 (264)
T ss_pred cccCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC----c------hHHHHHHHhc
Confidence 66665633 455777789999888766543321 2256899999986522 1 1114455667
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 78 ~ipvV~~ 84 (264)
T cd06274 78 GLPVVAL 84 (264)
T ss_pred CCCEEEe
Confidence 9998755
No 335
>PRK06849 hypothetical protein; Provisional
Probab=44.74 E-value=50 Score=34.63 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=46.8
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 3 NKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 3 ~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
|++++|+|+..+....-.++|.+.++|.++.++..+...-.....-.|..+...+|.. + .+.+...+.+.+.+.++
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~--d--~~~~~~~L~~i~~~~~i 77 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRW--D--PDAYIQALLSIVQRENI 77 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCC--C--HHHHHHHHHHHHHHcCC
Confidence 3457899997666557789999999999998875442110010122455554434432 1 12234566676766676
Q ss_pred cEE
Q 039743 83 YVL 85 (531)
Q Consensus 83 PvL 85 (531)
.++
T Consensus 78 d~v 80 (389)
T PRK06849 78 DLL 80 (389)
T ss_pred CEE
Confidence 554
No 336
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.57 E-value=74 Score=27.08 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=41.6
Q ss_pred EEEEEeCCCCc--HHHHHHHHHHCC-CEEEEEeCCCChhccc-cCCCCEEE-EcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 7 LVLILDYGSQY--THLITRRIRSLS-ILSLCLSGTCSLDDIT-AKNPRVVI-LSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 7 ~I~IlD~G~~~--~~~i~r~l~~~G-~~~~v~~~~~~~~~~~-~~~~dgiI-lsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
+|.++-.|+++ ...+...+...| ..+...+......... ...-|.+| +|-++.+ .-..+.++.+.++|
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t-------~e~~~~~~~a~~~g 73 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGET-------ADTLAALRLAKEKG 73 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCC-------HHHHHHHHHHHHcC
Confidence 36777778766 334567777776 6666655211111111 12234444 3332221 11346677888889
Q ss_pred CcEEEeeH
Q 039743 82 VYVLGICY 89 (531)
Q Consensus 82 iPvLGIC~ 89 (531)
.|+++|+-
T Consensus 74 ~~vi~iT~ 81 (126)
T cd05008 74 AKTVAITN 81 (126)
T ss_pred CeEEEEEC
Confidence 99999984
No 337
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=44.18 E-value=91 Score=30.52 Aligned_cols=59 Identities=5% Similarity=0.081 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.+.+.+++.|+.+.+...+ +.+. +...++||||+.+... ...+.+++.+.+.++|+..+
T Consensus 20 gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~--------~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 20 FAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV--------KLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch--------hhhHHHHHHHHhCCCeEEEe
Confidence 3567788899998877554 2221 2245799999975311 11245667777789999864
No 338
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=43.95 E-value=1.9e+02 Score=33.58 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=46.7
Q ss_pred cceeeccCCCCCHHHHHHHHHH---HhCCcEEEEEEeCCCCCh---hHH---HHHHHHHHHhCCCcEEEEECch
Q 039743 225 DHVICALSGGVDSTVAATLVHK---AIGDRLHCVFVDNGLLRY---KER---ERVMDTFEKDLHLPVTCVDATD 289 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k---~~g~~v~~v~id~g~~~~---~e~---~~~~~~la~~lgi~~~vvd~~~ 289 (531)
++++|++||+-.|.-+.--+.+ .+....++||++++-... .+. ....+ +|+.||-+..++...+
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~-Lae~lGae~~~l~~~d 321 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLR-LAEELGAEIVTLYGGD 321 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHH-HHHHhCCeEEEEeCCc
Confidence 7899999999999876544433 356789999999886432 222 22334 8999999999987653
No 339
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.88 E-value=75 Score=34.63 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=45.0
Q ss_pred CCCEEEEEeC-CCCc----HHHHHHHHH-HCCCEEEEEeCCCC-----------------hhcc--ccCCCCEEEEcCCC
Q 039743 4 KPELVLILDY-GSQY----THLITRRIR-SLSILSLCLSGTCS-----------------LDDI--TAKNPRVVILSGGP 58 (531)
Q Consensus 4 ~~~~I~IlD~-G~~~----~~~i~r~l~-~~G~~~~v~~~~~~-----------------~~~~--~~~~~dgiIlsGGp 58 (531)
.+.+|+|+-. +..- ...+.++|+ ..|+.+.+-+.... ..++ ...++|.+|.-||-
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGD 272 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGD 272 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCc
Confidence 3567888832 3322 344667777 47777766432100 0111 12358999999996
Q ss_pred CCCCCCCCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 59 HSVHSPDAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 59 ~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
++. ....+.+...++|||||=.|
T Consensus 273 GTl---------L~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 273 GTV---------LWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred HHH---------HHHHHHhccCCCcEEEEeCC
Confidence 642 23334444457999999766
No 340
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=43.49 E-value=71 Score=31.66 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=33.0
Q ss_pred CCcHHHHHHHHHHCCCEEEEEeC-CCChhcc----c--cCCCCEEEEcCCCCCCCC
Q 039743 15 SQYTHLITRRIRSLSILSLCLSG-TCSLDDI----T--AKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 15 ~~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~----~--~~~~dgiIlsGGp~s~~~ 63 (531)
.++.+-+++.|.++|+.+.-... .++.+++ . ..++|-||++||-+-..|
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~D 75 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHD 75 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCcc
Confidence 35677899999999997664432 2233332 1 456999999999774433
No 341
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=43.27 E-value=1.3e+02 Score=28.65 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=40.7
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|..+.|.. .+.+.+++.|..+.+...+.+.+. +...++||+|+.+... ...+++.+.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~----------~~~~~~~~~~~ 77 (259)
T cd01542 8 RLDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTI----------TDEHREAIKKL 77 (259)
T ss_pred CCccchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC----------CHHHHHHHhcC
Confidence 55444433 344777788999888765433221 2256899999985421 12455555666
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 78 ~ipvv~~ 84 (259)
T cd01542 78 NVPVVVV 84 (259)
T ss_pred CCCEEEE
Confidence 8999876
No 342
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.79 E-value=48 Score=32.98 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=41.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
|..|+.-+++-+..+++.|++.=-. .. +...++|.+|.-||-++. ....+.+...++||||
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~-----~~-----~~~~~~D~vi~iGGDGT~---------L~a~~~~~~~~iPilG 62 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKK-----KL-----AVEDGADYLFVLGGDGFF---------VSTAANYNCAGCKVVG 62 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhh-----CC-----CccCCCCEEEEECCcHHH---------HHHHHHhcCCCCcEEE
Confidence 5778888887777777777652100 00 113457999999996632 2233444446899999
Q ss_pred eeHHH
Q 039743 87 ICYGL 91 (531)
Q Consensus 87 IC~G~ 91 (531)
|=.|.
T Consensus 63 IN~G~ 67 (259)
T PRK00561 63 INTGH 67 (259)
T ss_pred EecCC
Confidence 98773
No 343
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.74 E-value=1.3e+02 Score=30.03 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=41.4
Q ss_pred eC-CCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccC--CCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 12 DY-GSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAK--NPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 12 D~-G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~--~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
++ ...|.. .+.+.+++.|+.+.+...+.+.+ .+... ++||||+.+... .....++.+
T Consensus 8 ~~~~~~~~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~---------~~~~~~~~~ 78 (305)
T cd06324 8 GKSDEPFWNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKS---------VAPELLRLA 78 (305)
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc---------chHHHHHHH
Confidence 55 555533 35577778899988876543322 12245 899999965321 123455666
Q ss_pred HhCCCcEEEe
Q 039743 78 LSNGVYVLGI 87 (531)
Q Consensus 78 ~~~~iPvLGI 87 (531)
.++++||.-+
T Consensus 79 ~~~giPvV~~ 88 (305)
T cd06324 79 EGAGVKLFLV 88 (305)
T ss_pred HhCCCeEEEE
Confidence 7789998765
No 344
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.73 E-value=1.3e+02 Score=28.86 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=39.5
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|..+.|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+... . ...++.+.++
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~----~------~~~~~~~~~~ 77 (265)
T cd06285 8 RLTDTVMATMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARS----D------DHFLDELTRR 77 (265)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----C------hHHHHHHHHc
Confidence 55555533 466778889999877665444321 2256899999974211 1 1235556667
Q ss_pred CCcEE
Q 039743 81 GVYVL 85 (531)
Q Consensus 81 ~iPvL 85 (531)
++|+.
T Consensus 78 ~iPvv 82 (265)
T cd06285 78 GVPFV 82 (265)
T ss_pred CCCEE
Confidence 99994
No 345
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.67 E-value=1.1e+02 Score=30.24 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred EEEE--eCCCCcHH----HHHHHHHHCCCEEEEE-eCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 8 VLIL--DYGSQYTH----LITRRIRSLSILSLCL-SGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 8 I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~-~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
|+++ ++.+.|.. .+.+.+++.|+.+.++ +...+.+ .+...++||||+.+... ......
T Consensus 2 i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~--------~~~~~~ 73 (294)
T cd06316 2 AAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDP--------VSTAAA 73 (294)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc--------hhhhHH
Confidence 4444 45544533 3456778899888754 3322221 12245799999964221 111345
Q ss_pred HHHHHhCCCcEEEe
Q 039743 74 LEWALSNGVYVLGI 87 (531)
Q Consensus 74 ~~~~~~~~iPvLGI 87 (531)
++.+.++++|+..+
T Consensus 74 i~~~~~~~iPvV~~ 87 (294)
T cd06316 74 YKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHcCCcEEEe
Confidence 66677789999754
No 346
>PLN02727 NAD kinase
Probab=42.34 E-value=69 Score=37.45 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCCCc----HHHHHHHHHHC-CCEEEEEeCCCC------------------hhccccCCCCEEEEcCCCCC
Q 039743 4 KPELVLILDYGSQY----THLITRRIRSL-SILSLCLSGTCS------------------LDDITAKNPRVVILSGGPHS 60 (531)
Q Consensus 4 ~~~~I~IlD~G~~~----~~~i~r~l~~~-G~~~~v~~~~~~------------------~~~~~~~~~dgiIlsGGp~s 60 (531)
.+.+|+||---..- ...++++|.+. |+.+.+-+.... .+++ ..++|.+|.-||-++
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~DLVIvLGGDGT 755 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDL-HERVDFVACLGGDGV 755 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhc-ccCCCEEEEECCcHH
Confidence 35689998432222 23467888887 877765432111 0111 235799999999664
Q ss_pred CCCCCCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
. ....+.+...++|||||=.|.
T Consensus 756 l---------LrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 756 I---------LHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred H---------HHHHHHhcCCCCCEEEEeCCC
Confidence 2 233344445689999998873
No 347
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.13 E-value=1.1e+02 Score=29.59 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=41.0
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
+..+.|.. -+.+.+++.|..+.+.+.+.+.+ .+...++||+|+.+...+ + +......++.+.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--~---~~~~~~~i~~~~~~ 82 (273)
T cd06292 8 ELSNPIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHA--D---THADHSHYERLAER 82 (273)
T ss_pred CCcCchHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCC--c---ccchhHHHHHHHhC
Confidence 44444533 45567777999888776543321 123568999999763211 1 11123344555667
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 83 ~ipvV~i 89 (273)
T cd06292 83 GLPVVLV 89 (273)
T ss_pred CCCEEEE
Confidence 9998654
No 348
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=42.04 E-value=1.3e+02 Score=25.90 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=23.7
Q ss_pred CCcHHHHHH----HHHHCCCEEEEEeCCC-ChhccccCCCCEEEEc
Q 039743 15 SQYTHLITR----RIRSLSILSLCLSGTC-SLDDITAKNPRVVILS 55 (531)
Q Consensus 15 ~~~~~~i~r----~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIls 55 (531)
.+++..+++ .+++.|+.+++.+.+. +..++ .++|+||+.
T Consensus 9 tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l--~~~d~iilg 52 (140)
T TIGR01753 9 TGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDL--LSYDAVLLG 52 (140)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHH--hcCCEEEEE
Confidence 344665554 4556788888887643 22333 457888773
No 349
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=41.58 E-value=1.2e+02 Score=30.93 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=46.3
Q ss_pred CEEEEE--eCCCCcHHHH----HHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHLI----TRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~i----~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ ++++.|...+ .+.+++.|+.+.+...+.+.+. +...++||||+.+...+ ....
T Consensus 26 ~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~--------~~~~ 97 (330)
T PRK10355 26 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ--------VLSN 97 (330)
T ss_pred ceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--------hHHH
Confidence 356666 5667775554 5666778999988765433321 22458999999853211 0123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.++++|++-+
T Consensus 98 ~l~~~~~~~iPvV~i 112 (330)
T PRK10355 98 VIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHHCCCeEEEE
Confidence 456666779999866
No 350
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.45 E-value=1.5e+02 Score=24.34 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=50.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEE--eCC-CChh-ccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCL--SGT-CSLD-DIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~--~~~-~~~~-~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
|+|+---.++...+.+.+++.|+..... ... .... .+. ..+.|.||+.=+.-| . .....+-+.|.+.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs---H---~~~~~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS---H---NAMWKVKKAAKKYG 75 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC---h---HHHHHHHHHHHHcC
Confidence 6676322377888999999999999888 111 1111 122 456799998755432 1 11235667778889
Q ss_pred CcEEEee-HHHHHHHH
Q 039743 82 VYVLGIC-YGLQLMVQ 96 (531)
Q Consensus 82 iPvLGIC-~G~Qlla~ 96 (531)
+|+.=.= .|..-|..
T Consensus 76 ip~~~~~~~~~~~l~~ 91 (97)
T PF10087_consen 76 IPIIYSRSRGVSSLER 91 (97)
T ss_pred CcEEEECCCCHHHHHH
Confidence 9997443 35444443
No 351
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=41.20 E-value=1.5e+02 Score=28.02 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=45.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEE-eCC---CChhcc------------------------ccCCCCEEEEcCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCL-SGT---CSLDDI------------------------TAKNPRVVILSGG 57 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~-~~~---~~~~~~------------------------~~~~~dgiIlsGG 57 (531)
.+|+++..-.++...+.+..+..|....-- +.. +....+ ....||.||+..-
T Consensus 57 g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~ 136 (193)
T cd01425 57 GKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDP 136 (193)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCC
Confidence 579999877777777777777777654322 111 112111 1345788888742
Q ss_pred CCCCCCCCCCCChHHHHHHHHhCCCcEEEee
Q 039743 58 PHSVHSPDAPAFPAGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 58 p~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC 88 (531)
.-+..+++.|...++|+.|+|
T Consensus 137 ----------~~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 137 ----------RKEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred ----------ccchHHHHHHHHcCCCEEEEe
Confidence 113456677777899999998
No 352
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.20 E-value=1.6e+02 Score=25.18 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=45.0
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHCCCEEEEEeCCCC----------hhccccCCCCEEEEcCCCCCCC---------CC
Q 039743 7 LVLILDY---GSQYTHLITRRIRSLSILSLCLSGTCS----------LDDITAKNPRVVILSGGPHSVH---------SP 64 (531)
Q Consensus 7 ~I~IlD~---G~~~~~~i~r~l~~~G~~~~v~~~~~~----------~~~~~~~~~dgiIlsGGp~s~~---------~~ 64 (531)
+|+|+-. -+.+.+.+.+.|++.|..+..+..... .++. ...+|.+++.-.+..+. +.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~-p~~iDlavv~~~~~~~~~~v~~~~~~g~ 80 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI-PEPIDLAVVCVPPDKVPEIVDEAAALGV 80 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC-SST-SEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCC-CCCCCEEEEEcCHHHHHHHHHHHHHcCC
Confidence 5777732 356788899999999976655543321 1111 24567666655433110 00
Q ss_pred CC-----CCChHHHHHHHHhCCCcEE-EeeHHHH
Q 039743 65 DA-----PAFPAGFLEWALSNGVYVL-GICYGLQ 92 (531)
Q Consensus 65 ~~-----~~~~~~l~~~~~~~~iPvL-GIC~G~Q 92 (531)
.. ....+++.+.+.+++++++ .=|.|+.
T Consensus 81 ~~v~~~~g~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 81 KAVWLQPGAESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp SEEEE-TTS--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred CEEEEEcchHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 00 1234578888888999999 4788875
No 353
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.71 E-value=1.1e+02 Score=29.56 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=43.8
Q ss_pred EEEE--eC-CCCcHHH----HHHHHHHCCCEEEEEeCCC-Chhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 8 VLIL--DY-GSQYTHL----ITRRIRSLSILSLCLSGTC-SLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 8 I~Il--D~-G~~~~~~----i~r~l~~~G~~~~v~~~~~-~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
|+++ +. .+.|... +.+++++.|..+.+...+. +.+. +...++||+|+.+... . . ...
T Consensus 2 i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----~---~-~~~ 73 (271)
T cd06312 2 IAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDP----D---A-LDP 73 (271)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh----H---H-hHH
Confidence 4444 44 5556444 4466777899988876543 3221 2245799999976321 1 1 123
Q ss_pred HHHHHHhCCCcEEEee
Q 039743 73 FLEWALSNGVYVLGIC 88 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC 88 (531)
.++.+.++++|++-+.
T Consensus 74 ~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 74 AIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHCCCeEEEeC
Confidence 4566677799998763
No 354
>PRK11914 diacylglycerol kinase; Reviewed
Probab=40.12 E-value=1.1e+02 Score=30.89 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=34.7
Q ss_pred CCEEEEEeC---CCCc----HHHHHHHHHHCCCEEEEEeCCCC--hhcc----ccCCCCEEEEcCCCCCC
Q 039743 5 PELVLILDY---GSQY----THLITRRIRSLSILSLCLSGTCS--LDDI----TAKNPRVVILSGGPHSV 61 (531)
Q Consensus 5 ~~~I~IlD~---G~~~----~~~i~r~l~~~G~~~~v~~~~~~--~~~~----~~~~~dgiIlsGGp~s~ 61 (531)
|+++++|=. |.+. ...+.+.|++.|..+.++..... ..++ ...++|.||+.||-+++
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 456666633 4332 23467788899988776543321 1111 14568999999997754
No 355
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.10 E-value=76 Score=31.11 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
...+.+.+++.|..+.+...+...+.+...++||+|+.+... . ...++.+.+.++|+.-+
T Consensus 26 ~~~i~~~~~~~gy~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~-------~~~~~~l~~~~iPvV~i 85 (269)
T cd06287 26 AAAAAESALERGLALCLVPPHEADSPLDALDIDGAILVEPMA---D-------DPQVARLRQRGIPVVSI 85 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCchhhhhccCcCeEEEecCCC---C-------CHHHHHHHHcCCCEEEe
Confidence 445678888999999887765333334466899999975321 1 12334445568898644
No 356
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.87 E-value=1.7e+02 Score=28.20 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 13 YGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 13 ~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
+...|.. .+.+.+++.|+.+.+...+.+.+. +...++||||+.+... ...++.+.+.+
T Consensus 12 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~-----------~~~~~~l~~~~ 80 (268)
T cd06277 12 NSPAFYSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIS-----------TEYIKEIKELG 80 (268)
T ss_pred ccCCcHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCC-----------hHHHHHHhhcC
Confidence 5555543 355777788999888765533211 2245799999976321 12355566679
Q ss_pred CcEEEe
Q 039743 82 VYVLGI 87 (531)
Q Consensus 82 iPvLGI 87 (531)
+|+..+
T Consensus 81 ipvV~~ 86 (268)
T cd06277 81 IPFVLV 86 (268)
T ss_pred CCEEEE
Confidence 998754
No 357
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=39.72 E-value=1.2e+02 Score=28.93 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=39.0
Q ss_pred eCCCCcH----HHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYT----HLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
+..+.|. ..+.+++++.|..+.+...+.+.+. +...++||+|+.+... + ....+. ..+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~------~~~~~~-~~~ 76 (267)
T cd06284 8 DIANPFFSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL----P------PTALTA-LAK 76 (267)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC----C------HHHHHH-Hhc
Confidence 5555553 3455777889998887765544321 2245799999965421 1 112222 345
Q ss_pred CCcEEEee
Q 039743 81 GVYVLGIC 88 (531)
Q Consensus 81 ~iPvLGIC 88 (531)
++|+..++
T Consensus 77 ~ipvv~~~ 84 (267)
T cd06284 77 LPPIVQAC 84 (267)
T ss_pred CCCEEEEe
Confidence 99998763
No 358
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.67 E-value=1.5e+02 Score=28.52 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=40.7
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|..+.|.. .+.+.+++.|..+.+...+.+.+ .+...++||||+.+... . ...++.+.++
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~-----~-----~~~~~~~~~~ 77 (270)
T cd06296 8 DLDSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPEL-----T-----SAQRAALRRT 77 (270)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCC-----C-----hHHHHHHhcC
Confidence 55566643 45577778899888876543321 12245799999965321 1 1235666667
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 78 ~ipvV~i 84 (270)
T cd06296 78 GIPFVVV 84 (270)
T ss_pred CCCEEEE
Confidence 9999754
No 359
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=39.58 E-value=81 Score=32.49 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 49 PRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 49 ~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+|-+++.||......... .-..+.++.+..+|.++-|||-|.-+|+++
T Consensus 77 ~~~v~v~~g~~~~~~~~~-~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 77 IDILPVCGGLGPERPVNA-PALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred ceEEEEecCCCcccccch-HHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 666777666432111110 112355666677899999999999999985
No 360
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.32 E-value=77 Score=31.61 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=37.9
Q ss_pred EEEEEeCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--C
Q 039743 7 LVLILDYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--N 80 (531)
Q Consensus 7 ~I~IlD~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~ 80 (531)
+|+|+-........ +.+++++.|+.+ + ..++|.+|.-||-++. ....+.+.. .
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~-------~~~~Dlvi~iGGDGT~---------L~a~~~~~~~~~ 60 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKDFGFIL-----D-------EKNPDIVISVGGDGTL---------LSAFHRYENQLD 60 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----C-------CcCCCEEEEECCcHHH---------HHHHHHhcccCC
Confidence 47777554433333 445566677652 1 1346999999996632 122333333 4
Q ss_pred CCcEEEeeHHH
Q 039743 81 GVYVLGICYGL 91 (531)
Q Consensus 81 ~iPvLGIC~G~ 91 (531)
++|++||=.|.
T Consensus 61 ~iPilGIN~G~ 71 (265)
T PRK04885 61 KVRFVGVHTGH 71 (265)
T ss_pred CCeEEEEeCCC
Confidence 89999998774
No 361
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=39.09 E-value=37 Score=32.68 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=37.5
Q ss_pred hhhhhhhccccCccceeeccCCCCCHHHHHHHHHHH--hC-CcEEEEEEeCCCCChh
Q 039743 212 EEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKA--IG-DRLHCVFVDNGLLRYK 265 (531)
Q Consensus 212 ~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~--~g-~~v~~v~id~g~~~~~ 265 (531)
..++.+++.+...+++.+++|||---..+...+.+. +. .+++...+|--..+.+
T Consensus 10 ~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~~~i~w~~v~~f~~DEr~Vp~~ 66 (219)
T cd01400 10 RIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAAPALDWSKVHVFLGDERCVPPD 66 (219)
T ss_pred HHHHHHHHHHHhcCeEEEEECCCccHHHHHHHhccccCCCCceEEEEEeeccccCCC
Confidence 344555665655678999999998877776666543 45 5788888887665443
No 362
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=38.83 E-value=63 Score=28.30 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 17 YTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
+...+..++++.|+.+..... ..+.+.+. ..++|.||.+||-+
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 456788999999987765532 23333221 24589999999965
No 363
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.72 E-value=1.5e+02 Score=29.04 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=41.9
Q ss_pred EEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ ++...|.. -+.+.+++.|..+.+.....+.+ .+...++||||+.+...+ .....
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~--------~~~~~ 73 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAA--------ELQAE 73 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHH--------HHHHH
Confidence 35544 55555543 34577778898887765443322 122568999999863211 01233
Q ss_pred HHHHHhCCCcEEEe
Q 039743 74 LEWALSNGVYVLGI 87 (531)
Q Consensus 74 ~~~~~~~~iPvLGI 87 (531)
++.+.+.++|+.-+
T Consensus 74 ~~~~~~~~iPvV~~ 87 (280)
T cd06315 74 LELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHCCCCEEEe
Confidence 34455668999765
No 364
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=38.71 E-value=22 Score=35.61 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=38.7
Q ss_pred CCCCcccchhhhhheecccc------ccccccccchhhhhhhhhhccccCccceeeccCCC-CCHHHHHHHHHHH
Q 039743 180 VTHSPEGMETLRYFLFDVCG------VNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGG-VDSTVAATLVHKA 247 (531)
Q Consensus 180 ~~~~~~g~~i~~~F~~~~~~------~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGG-vDS~v~a~l~~k~ 247 (531)
++|...|..|+..++ +..+ .+++|+-.+ .++. +| .-+...++|+| +||+|+=+-+.|.
T Consensus 28 VDHPsFG~AiIgR~L-e~~GyrVgIiaQPdw~~~~-------df~~-lG-~PrLff~VsaGn~DSMV~hYTa~kk 92 (302)
T PF08497_consen 28 VDHPSFGAAIIGRVL-EAHGYRVGIIAQPDWRSPE-------DFKR-LG-RPRLFFGVSAGNMDSMVNHYTASKK 92 (302)
T ss_pred ccCcchhHHHHHHHH-HHcCCeEEEEeCCCCCChH-------HHHH-hC-CCcEEEEEccccHHHHHHhhccccc
Confidence 455567777777776 3332 367886542 2333 45 45899999998 9999987777654
No 365
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.62 E-value=1.8e+02 Score=27.85 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=39.9
Q ss_pred eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|+.+.|... +.+..++.|..+.+.....+.+. +...++||+|+.+... .. ...++.+.++
T Consensus 8 ~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~----~~-----~~~~~~~~~~ 78 (268)
T cd06289 8 DLTNPFFAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAG----TS-----PDLLKRLAES 78 (268)
T ss_pred CCCcchHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCC----cc-----HHHHHHHHhc
Confidence 666666443 44667778988776643333221 2245799999986421 11 1245566677
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 79 ~ipvV~~ 85 (268)
T cd06289 79 GIPVVLV 85 (268)
T ss_pred CCCEEEE
Confidence 9999754
No 366
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=38.08 E-value=2.2e+02 Score=28.63 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=43.6
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ ++...|.. .+.+.+++.|..+.+.....+.+. +...++||||+.+... . ...
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~-----~~~ 135 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAG----S-----SDD 135 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC----C-----cHH
Confidence 356666 44444533 355777788988777655433221 2245799999986532 1 123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 136 ~~~~l~~~~iPvV~~ 150 (342)
T PRK10014 136 LREMAEEKGIPVVFA 150 (342)
T ss_pred HHHHHhhcCCCEEEE
Confidence 455666678998743
No 367
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=37.41 E-value=83 Score=34.84 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=36.7
Q ss_pred CEEEEEeCCC----------------CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 6 ELVLILDYGS----------------QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G~----------------~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
++|+||-.|+ .++..++.++++.|+++..++. .++.+.+. ..+.|.||++||-+
T Consensus 180 prV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 180 PKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred CEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 5788886664 2455788889999998765542 33333332 24689999999965
No 368
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.40 E-value=92 Score=31.10 Aligned_cols=68 Identities=7% Similarity=0.026 Sum_probs=40.8
Q ss_pred eCCCCcHHH----HHHHHHH--CCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 12 DYGSQYTHL----ITRRIRS--LSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~--~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
++.+.|... +.+.+.+ .|+.+.+.+.+.+.+ .+...++||||+.+... ......++.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~--------~~~~~~~~~~~ 79 (303)
T cd01539 8 KFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDP--------TAAQTVINKAK 79 (303)
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCch--------hhHHHHHHHHH
Confidence 566666443 4556666 677777766543322 22356899999965321 11234566667
Q ss_pred hCCCcEEEe
Q 039743 79 SNGVYVLGI 87 (531)
Q Consensus 79 ~~~iPvLGI 87 (531)
+.++||.-+
T Consensus 80 ~~giPvV~~ 88 (303)
T cd01539 80 QKNIPVIFF 88 (303)
T ss_pred HCCCCEEEe
Confidence 779998654
No 369
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=36.88 E-value=2.3e+02 Score=28.52 Aligned_cols=72 Identities=8% Similarity=0.083 Sum_probs=42.5
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ +..+.|... +.+.+++.|..+.+.....+.+. +...++||||+.++.. ...
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----------~~~ 129 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEY----------PEP 129 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----------CHH
Confidence 356666 444555443 44666778988887754433221 2245799999987521 123
Q ss_pred HHHHHHh-CCCcEEEe
Q 039743 73 FLEWALS-NGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~-~~iPvLGI 87 (531)
.++.+.+ .++|+.-+
T Consensus 130 ~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 130 LLAMLEEYRHIPMVVM 145 (341)
T ss_pred HHHHHHhcCCCCEEEE
Confidence 4455555 68998754
No 370
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=36.16 E-value=1.7e+02 Score=27.85 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=36.1
Q ss_pred HHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 21 ITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
+.+++++.|..+.+.+.+.+.+ .+...++||+|+.+... . .....++.+.+.++|+..+
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~----~----~~~~~~~~l~~~~ip~V~~ 86 (267)
T cd01536 21 AEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDS----A----ALTPALKKANAAGIPVVTV 86 (267)
T ss_pred HHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc----h----hHHHHHHHHHHCCCcEEEe
Confidence 3456667899998887654322 12245899999976422 1 0122445556678999765
No 371
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=35.88 E-value=91 Score=31.19 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 17 YTHLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
....+.+..++.|+.+.+.+.+.+.+. +...++||||+.+... ......++.+.++++||..+
T Consensus 16 ~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~--------~~~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 16 DRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNG--------QVLSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--------hHHHHHHHHHHHCCCeEEEe
Confidence 355677888899999888765533221 2246799999975321 11234566777789999754
No 372
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=35.66 E-value=1.6e+02 Score=29.24 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=39.9
Q ss_pred eCCCCcHHH----HHHHHHHCCCEEEEE-eCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 12 DYGSQYTHL----ITRRIRSLSILSLCL-SGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~~G~~~~v~-~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
+....|... +.+.+++.|..+.++ +.+.+.+. +...++||||+.+... ......++.+.+
T Consensus 8 ~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~--------~~~~~~~~~~~~ 79 (298)
T cd06302 8 VTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDP--------DALEPVLKKARE 79 (298)
T ss_pred CCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCH--------HHHHHHHHHHHH
Confidence 455555443 446667789988875 44333221 1245799999974321 101345566667
Q ss_pred CCCcEEEe
Q 039743 80 NGVYVLGI 87 (531)
Q Consensus 80 ~~iPvLGI 87 (531)
+++|+.-+
T Consensus 80 ~~iPvV~v 87 (298)
T cd06302 80 AGIKVVTH 87 (298)
T ss_pred CCCeEEEE
Confidence 79998755
No 373
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=35.48 E-value=1.1e+02 Score=29.79 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=39.6
Q ss_pred eCCCCcHHH----HHHHHHHCCCEEEEEeCCC--Chh-c------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 12 DYGSQYTHL----ITRRIRSLSILSLCLSGTC--SLD-D------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~~G~~~~v~~~~~--~~~-~------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
++...|... +.+.+++.|+.+.+...+. +.+ + +...++||||+.+... . . .. .+..+.
T Consensus 8 ~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~-----~--~-~~-~~~~~~ 78 (268)
T cd06306 8 HLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSP-----D--G-LN-EILQQV 78 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh-----h--h-HH-HHHHHH
Confidence 555555443 4577778999988875432 111 1 1246899999975321 1 1 11 345556
Q ss_pred hCCCcEEEe
Q 039743 79 SNGVYVLGI 87 (531)
Q Consensus 79 ~~~iPvLGI 87 (531)
+.++|++-+
T Consensus 79 ~~giPvV~~ 87 (268)
T cd06306 79 AASIPVIAL 87 (268)
T ss_pred HCCCCEEEe
Confidence 779999754
No 374
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=35.20 E-value=1.4e+02 Score=28.52 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=41.2
Q ss_pred eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQY----THLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
+..+.| .+.+.+.+++.|..+.+.+.+.+.+. +...++||+|+.+ ..+ ....+.++.+.+.
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~-~~~-------~~~~~~l~~l~~~ 79 (268)
T cd06323 8 TLNNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP-TDS-------DAVVPAVKAANEA 79 (268)
T ss_pred cccCHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC-CCh-------HHHHHHHHHHHHC
Confidence 455545 33466778889998887765433321 1245799999953 211 1123455666667
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|++-+
T Consensus 80 ~ipvv~~ 86 (268)
T cd06323 80 GIPVFTI 86 (268)
T ss_pred CCcEEEE
Confidence 9999876
No 375
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.09 E-value=2.1e+02 Score=27.23 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCEEEEEeCCCChh------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 20 LITRRIRSLSILSLCLSGTCSLD------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.+.+.+++.|..+.+...+.+.+ .+...++||||+.+... . ...++.+.+.++|+.-+
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-----~-----~~~~~~~~~~~ipvV~~ 83 (266)
T cd06278 20 ALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTL-----S-----SELAEECRRNGIPVVLI 83 (266)
T ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCC-----C-----HHHHHHHhhcCCCEEEE
Confidence 35577888999998876654321 12256799999975421 1 12356666679998765
No 376
>PRK09982 universal stress protein UspD; Provisional
Probab=35.05 E-value=3.1e+02 Score=23.91 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.6
Q ss_pred ccceeeccCCCCCHHHHHHHHH---HHhCCcEEEEEEeC
Q 039743 224 EDHVICALSGGVDSTVAATLVH---KAIGDRLHCVFVDN 259 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~---k~~g~~v~~v~id~ 259 (531)
.+++++++.|.-.|.-++..+. +..+.+++.+|+..
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~ 41 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDD 41 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 3689999999999987766554 33578899999854
No 377
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=35.03 E-value=1e+02 Score=32.91 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=36.2
Q ss_pred CEEEEEeCCC----------------CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 6 ELVLILDYGS----------------QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G~----------------~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
++|.|+--|+ .+...+..++++.|+.+..... .++.+.+. ..++|.||.+||-+
T Consensus 194 prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 194 LRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred CEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 5788886663 2456788999999998764432 23333221 34689999999865
No 378
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=34.99 E-value=1.3e+02 Score=32.66 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=31.8
Q ss_pred EEEEEeCCCCc------HHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEE
Q 039743 7 LVLILDYGSQY------THLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVIL 54 (531)
Q Consensus 7 ~I~IlD~G~~~------~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIl 54 (531)
+|+|| ||||. ..++.|.+++.|..+.+.+.+. +.+.+ .+.+.+|+
T Consensus 2 ~i~IL-YGSqTGtA~dvAe~l~Re~~r~~~~~~V~s~Deyd~~~l--l~~~~vvF 53 (574)
T KOG1159|consen 2 KILIL-YGSQTGTAQDVAESLGREAHRRGLQCLVMSMDEYDVEKL--LDERLVVF 53 (574)
T ss_pred ceEEE-eecCcccHHHHHHHHHHHHHhccCCceEeeccccCHhHh--ccCceEEE
Confidence 57887 88876 4568888899999999988764 44544 34455544
No 379
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=34.90 E-value=2.1e+02 Score=28.21 Aligned_cols=74 Identities=7% Similarity=0.146 Sum_probs=43.8
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ ++.+.|.. .+.+.+++.|..+.+.....+.+. +...++||+|+.+... .....
T Consensus 27 ~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~--------~~~~~ 98 (295)
T PRK10653 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS--------DAVGN 98 (295)
T ss_pred CeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh--------HHHHH
Confidence 356665 55555544 355777788998887654333221 2245799999965311 11123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 99 ~l~~~~~~~ipvV~~ 113 (295)
T PRK10653 99 AVKMANQANIPVITL 113 (295)
T ss_pred HHHHHHHCCCCEEEE
Confidence 455666679999876
No 380
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=34.29 E-value=25 Score=29.86 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=36.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCC
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~ 59 (531)
||+|||--.+..+.+..-|+-+|..++.+..............+++++..|..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 53 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADWSSPWEACAVILGSC 53 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhhhcCCcEEEEEecCc
Confidence 58999987777778888888889999987653321112234567776665544
No 381
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.25 E-value=2e+02 Score=31.36 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=49.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hccc-----------------cCCCCEEEEcCCCCCCCCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDIT-----------------AKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~-----------------~~~~dgiIlsGGp~s~~~~~ 65 (531)
.+|+|+..|..-. ++++.|.+.|..+......... +.+. ..++|.||+|.|-.....+
T Consensus 8 ~~i~v~G~G~sG~-s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~- 85 (498)
T PRK02006 8 PMVLVLGLGESGL-AMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAA- 85 (498)
T ss_pred CEEEEEeecHhHH-HHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccc-
Confidence 5799999987654 4999999999988776532211 1110 0134556665542210000
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
....+..+.+.++||++- .+++...+
T Consensus 86 ----~~~~~~~a~~~~i~v~~~---~e~~~~~~ 111 (498)
T PRK02006 86 ----LAPLVAAARERGIPVWGE---IELFAQAL 111 (498)
T ss_pred ----cCHHHHHHHHCCCcEEEH---HHHHHHHH
Confidence 013456667789999965 66666554
No 382
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=34.24 E-value=1.5e+02 Score=28.64 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=39.8
Q ss_pred eCCCCcHHH----HHHHHHHC-CCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 12 DYGSQYTHL----ITRRIRSL-SILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~~-G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
|+.+.|... +.+.+.+. |+.+.+.....+.+ .+...++||||+.+...+ . ....++.+.+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~-------~-~~~~~~~~~~ 79 (270)
T cd06308 8 NLADPWRAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAA-------P-LTPVVEEAYR 79 (270)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchh-------h-chHHHHHHHH
Confidence 555555443 44556665 78887765433221 122457999999754211 1 1234555667
Q ss_pred CCCcEEEee
Q 039743 80 NGVYVLGIC 88 (531)
Q Consensus 80 ~~iPvLGIC 88 (531)
+++|+.-+.
T Consensus 80 ~~ipvV~~~ 88 (270)
T cd06308 80 AGIPVILLD 88 (270)
T ss_pred CCCCEEEeC
Confidence 799998663
No 383
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.21 E-value=1.5e+02 Score=28.67 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=38.7
Q ss_pred eCCCCcHH----HHHHHHHH--CCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 12 DYGSQYTH----LITRRIRS--LSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~--~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
+..+.|.. .+.+++++ .|+.+.+.+...+.+ .+...++||||+.+... + .....++.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~----~----~~~~~i~~~~ 79 (271)
T cd06321 8 DLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDS----K----GIAPAVKRAQ 79 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh----h----HhHHHHHHHH
Confidence 55555533 35577777 666665554433321 12245799999965311 1 0123456666
Q ss_pred hCCCcEEEe
Q 039743 79 SNGVYVLGI 87 (531)
Q Consensus 79 ~~~iPvLGI 87 (531)
+.++|+.-+
T Consensus 80 ~~~ipvv~~ 88 (271)
T cd06321 80 AAGIVVVAV 88 (271)
T ss_pred HCCCeEEEe
Confidence 778999766
No 384
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=33.91 E-value=3.1e+02 Score=23.67 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=26.4
Q ss_pred ceeeccCCCCCHHHHHHHHHHH---hCCcEEEEEEeC
Q 039743 226 HVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDN 259 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~---~g~~v~~v~id~ 259 (531)
+|+|++.|.-.|.-++..+.+. .|.+++.+|+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~ 37 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHP 37 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEecc
Confidence 5899999998888887777654 267899998854
No 385
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=33.38 E-value=3e+02 Score=27.51 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=42.0
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ ++...|.. .+.+.+++.|..+.+.....+.+. +...++||||+.+... . ...
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~-----~~~ 132 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLP----P-----EHP 132 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC----C-----ChH
Confidence 356666 44555543 355667788998887654333221 2245799999976421 0 112
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 133 ~~~~l~~~~iPvV~v 147 (328)
T PRK11303 133 FYQRLQNDGLPIIAL 147 (328)
T ss_pred HHHHHHhcCCCEEEE
Confidence 344445568998644
No 386
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=32.97 E-value=1e+02 Score=29.51 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChh------cc-ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLD------DI-TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~------~~-~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
..+.+.+++.|..+.+...+...+ .+ ...++||+|+.+... .. ..++.+.++++|+..+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~------~~~~~~~~~~ipvV~~ 88 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRP----DD------PRVALLLERGFPFVTH 88 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCC----CC------hHHHHHHhcCCCEEEE
Confidence 346677888999988876543311 11 134699999976421 11 1234445569999765
No 387
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.83 E-value=1.9e+02 Score=31.23 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=24.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSG 37 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~ 37 (531)
.+|+|+-+|-+ -...++.|++.|+.+.+...
T Consensus 9 ~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~ 39 (468)
T PRK04690 9 RRVALWGWGRE-GRAAYRALRAHLPAQALTLF 39 (468)
T ss_pred CEEEEEccchh-hHHHHHHHHHcCCEEEEEcC
Confidence 47999999843 34688999999999888653
No 388
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.44 E-value=1.4e+02 Score=29.87 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=40.0
Q ss_pred CCEEEEEeCCCCcH----HHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh-
Q 039743 5 PELVLILDYGSQYT----HLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~- 79 (531)
|.+|+|+-...... ..+.+++++.|+.+.+- . .++|.+|.-||-++. ....+.+..
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~--------~--~~~D~vi~lGGDGT~---------L~a~~~~~~~ 62 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH--------P--KNANIIVSIGGDGTF---------LQAVRKTGFR 62 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC--------C--CCccEEEEECCcHHH---------HHHHHHhccc
Confidence 34677774433332 23556777889876532 1 246899999996532 122232222
Q ss_pred CCCcEEEeeH-H
Q 039743 80 NGVYVLGICY-G 90 (531)
Q Consensus 80 ~~iPvLGIC~-G 90 (531)
.++|+|||=. |
T Consensus 63 ~~~pilgIn~~G 74 (264)
T PRK03501 63 EDCLYAGISTKD 74 (264)
T ss_pred CCCeEEeEecCC
Confidence 2789999988 6
No 389
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=32.30 E-value=94 Score=25.88 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhc--cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDD--ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~--~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
...+.+.+++ -...+.+-+...-. ....+..++||+||.. ..+.+++.+.+.++||+.+=+..
T Consensus 31 ~~~~~~~~~~--~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~---------~~~~v~~la~~~~i~vi~t~~dt 95 (105)
T PF07085_consen 31 LSDFLEYLKP--GDLVITPGDREDIQLAAIEAGIACIILTGGLE---------PSEEVLELAKELGIPVISTPYDT 95 (105)
T ss_dssp HHHHHHCHHT--TEEEEEETT-HHHHHHHCCTTECEEEEETT-------------HHHHHHHHHHT-EEEE-SS-H
T ss_pred HHHHHhhcCC--CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCC---------CCHHHHHHHHHCCCEEEEECCCH
Confidence 3455666665 35666665542111 1245679999999743 24678888888899999875543
No 390
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=32.06 E-value=2.9e+02 Score=27.67 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=42.7
Q ss_pred CEEEEE--eCCCCcH----HHHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYT----HLITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ ++.+.|. +.+.+.+++.|..+.+.+.+.+.+ .+...++||||+.+.. . ...
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~-----~-----~~~ 133 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERT-----H-----TPR 133 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCC-----C-----CHH
Confidence 356666 4444443 345677778898888766543321 1224589999997421 1 123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 134 ~~~~l~~~~iPvV~~ 148 (331)
T PRK14987 134 TLKMIEVAGIPVVEL 148 (331)
T ss_pred HHHHHHhCCCCEEEE
Confidence 455556679998754
No 391
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=31.83 E-value=2.6e+02 Score=26.86 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=40.4
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
++.+.|.. .+.+.++++|..+.+...+.+.+ .+...++||||+.+... ....++.+.++
T Consensus 8 ~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~----------~~~~~~~~~~~ 77 (268)
T cd06270 8 DLDGPFFGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKAL----------SDDELIELAAQ 77 (268)
T ss_pred cccCcchHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCC----------CHHHHHHHhhC
Confidence 66666644 45566778999988876543322 12256899999986311 11225666667
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 78 ~ipvV~~ 84 (268)
T cd06270 78 VPPLVLI 84 (268)
T ss_pred CCCEEEE
Confidence 8997544
No 392
>PRK05723 flavodoxin; Provisional
Probab=31.74 E-value=2.2e+02 Score=25.70 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=25.7
Q ss_pred EEEEEeCCCCc--HHH----HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEE
Q 039743 7 LVLILDYGSQY--THL----ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVIL 54 (531)
Q Consensus 7 ~I~IlD~G~~~--~~~----i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIl 54 (531)
+|.|+ |||+. +.. +++.+++.|+.+.+++. .+..++....++.||+
T Consensus 2 ~i~I~-ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~-~~~~~~~~~~~~~li~ 53 (151)
T PRK05723 2 KVAIL-SGSVYGTAEEVARHAESLLKAAGFEAWHNPR-ASLQDLQAFAPEALLA 53 (151)
T ss_pred eEEEE-EEcCchHHHHHHHHHHHHHHHCCCceeecCc-CCHhHHHhCCCCeEEE
Confidence 57777 77766 444 45555667888766542 2333333233466655
No 393
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.51 E-value=1.1e+02 Score=28.91 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.+..++++.|..+++.+.+.+.++ +...++||||+.+...+ ... ++.+.++++|+..+
T Consensus 20 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~---------~~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 20 GIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLD---------DEL-LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcc---------hHH-HHHHHHcCCCEEEe
Confidence 355666678999988877654321 22457999999766432 111 55566779999876
No 394
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=31.48 E-value=3.2e+02 Score=27.27 Aligned_cols=72 Identities=15% Similarity=0.069 Sum_probs=41.7
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ |+.+.|... +.+.+++.|..+.+...+.+.+. +...++||||+.+... ...
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~----------~~~ 129 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTI----------TEK 129 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC----------ChH
Confidence 356666 445555333 44666778988887755433221 2245799999975321 122
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
+++.+.+.++|+.-+
T Consensus 130 ~~~~l~~~~iPvV~~ 144 (329)
T TIGR01481 130 LREEFSRSPVPVVLA 144 (329)
T ss_pred HHHHHHhcCCCEEEE
Confidence 344445568998754
No 395
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.44 E-value=2.1e+02 Score=27.22 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=40.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeC---CC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSG---TC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~---~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+++.--.+....+.+.-+..|.....-.+ .. ....-....||.||+.. |.-+...++.|..-+
T Consensus 62 ~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~d----------p~~~~~Av~EA~~l~ 131 (196)
T TIGR01012 62 EDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTD----------PRADHQALKEASEVG 131 (196)
T ss_pred CeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEEC----------CccccHHHHHHHHcC
Confidence 35777765555555566666666665532211 10 11100123467787752 122345667777889
Q ss_pred CcEEEeeH
Q 039743 82 VYVLGICY 89 (531)
Q Consensus 82 iPvLGIC~ 89 (531)
+|+.|||-
T Consensus 132 IP~Iai~D 139 (196)
T TIGR01012 132 IPIVALCD 139 (196)
T ss_pred CCEEEEee
Confidence 99999993
No 396
>PRK00549 competence damage-inducible protein A; Provisional
Probab=31.40 E-value=2.2e+02 Score=30.36 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHCCCEEEEEe-CCCChhccc------cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEee
Q 039743 16 QYTHLITRRIRSLSILSLCLS-GTCSLDDIT------AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~~------~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC 88 (531)
.+...++++|+++|+.+.... ..++.+.+. ..+.|-||++||-+-..++ +.++.+..+. +.|+..-=
T Consensus 20 tN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt~dD----~t~ea~a~~~--g~~l~~~~ 93 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGPTKDD----LTKETVAKFL--GRELVLDE 93 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCCCCCc----cHHHHHHHHh--CCCCcCCH
Confidence 346678999999998765432 222333221 3578999999996632222 2233333322 45554444
Q ss_pred HHHHHHHHH
Q 039743 89 YGLQLMVQK 97 (531)
Q Consensus 89 ~G~Qlla~~ 97 (531)
--++.|-..
T Consensus 94 ~~~~~i~~~ 102 (414)
T PRK00549 94 EALAKIEDY 102 (414)
T ss_pred HHHHHHHHH
Confidence 444444443
No 397
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.39 E-value=1.9e+02 Score=27.68 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=41.1
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|....|.. .+.+.+++.|+.+.+.....+.+. +...++||+|+.+... . . ....++.+.+.
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~---~-~~~~~~~~~~~ 79 (267)
T cd06322 8 TQQHPFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDS----K---G-IRAAIAKAKKA 79 (267)
T ss_pred CcccHHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh----h---h-hHHHHHHHHHC
Confidence 55555543 455667778999887765433221 2255899999975311 0 1 12345666677
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|++-+
T Consensus 80 ~ipvV~~ 86 (267)
T cd06322 80 GIPVITV 86 (267)
T ss_pred CCCEEEE
Confidence 9999876
No 398
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.37 E-value=1.1e+02 Score=29.53 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.+.+.+++.|..+.+.....+.+. +...++||||+.+.... .....++.+.++++|+.-+
T Consensus 21 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--------~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 21 AFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQ--------AYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCcc--------ccHHHHHHHHHCCCcEEEe
Confidence 455667788999888765433221 22457999999754211 1123445666779998754
No 399
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.10 E-value=1.9e+02 Score=31.17 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=48.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-h-----hccc---------------cCCCCEEEEcCCCCCCCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-L-----DDIT---------------AKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~-----~~~~---------------~~~~dgiIlsGGp~s~~~~ 64 (531)
.+|+|+.+|..-. .+++.|+..|..+.+...... . +.+. ..++|.||.|.|-.
T Consensus 15 ~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~----- 88 (458)
T PRK01710 15 KKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMR----- 88 (458)
T ss_pred CeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCC-----
Confidence 5799999987554 788999999998887653211 0 1110 12356666654322
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
. ....+..+.+.++||++ -.|++.+..
T Consensus 89 ---~-~~p~~~~a~~~~i~i~s---~~e~~~~~~ 115 (458)
T PRK01710 89 ---I-DSPELVKAKEEGAYITS---EMEEFIKYC 115 (458)
T ss_pred ---C-CchHHHHHHHcCCcEEe---chHHhhhhc
Confidence 1 12355667778999986 335554443
No 400
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.06 E-value=1.9e+02 Score=31.11 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=45.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhcc-----c--------cCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDI-----T--------AKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~-----~--------~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+|+.+|..-.. .++.|+++|..+........ ...+ . ..++|-||.|.|-.. ..|...
T Consensus 10 ~~i~viG~G~~G~~-~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~----~~~~~~- 83 (460)
T PRK01390 10 KTVAVFGLGGSGLA-TARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPL----THPKPH- 83 (460)
T ss_pred CEEEEEeecHhHHH-HHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCc----cCCccc-
Confidence 47999999876654 59999999998877653211 1000 0 124677887776431 111111
Q ss_pred HHHHHHHhCCCcEEE
Q 039743 72 GFLEWALSNGVYVLG 86 (531)
Q Consensus 72 ~l~~~~~~~~iPvLG 86 (531)
..+..+.++++||++
T Consensus 84 ~~v~~a~~~gi~i~~ 98 (460)
T PRK01390 84 WVVDLARAAGVEVIG 98 (460)
T ss_pred HHHHHHHHcCCcEEe
Confidence 245566677899986
No 401
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.01 E-value=1.1e+02 Score=29.97 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCEEEEEeCCCC---hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 19 HLITRRIRSLSILSLCLSGTCS---LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~---~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
..+.+.+++.|..+.+.+.+.. .+.+...++||+|+.+.+.+ ...++.+.+.++|+.-+
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~----------~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVPRD----------DPLVAALLRRGLPVVVV 85 (283)
T ss_pred HHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCCCC----------hHHHHHHHHcCCCEEEE
Confidence 3466788889999988765431 12233678999999864321 12456666779998644
No 402
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=31.00 E-value=1.4e+02 Score=28.13 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 21 ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
+.+++++.|+..++.+...+.+. +...++||+|+++...+ . .. .++.+.++++|++.+
T Consensus 21 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~----~----~~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 21 IEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLT----A----PT-IVKLARKAGIPVVLV 85 (264)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCc----c----hh-HHHHhhhcCCCEEEe
Confidence 44667778999888876543321 22457999999764321 1 11 345555669999875
No 403
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=30.88 E-value=75 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.8
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL 261 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~ 261 (531)
+.+++++++-..+|..|..++..+.+. |.+ +..+..|+
T Consensus 58 ~~~~~~ivv~C~~G~rs~~aa~~L~~~-G~~--~~~l~GG~ 95 (100)
T cd01523 58 LPDDQEVTVICAKEGSSQFVAELLAER-GYD--VDYLAGGM 95 (100)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHc-Cce--eEEeCCcH
Confidence 445678888888899999999888776 877 45566665
No 404
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=30.85 E-value=2e+02 Score=29.42 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=44.2
Q ss_pred CEEEEE--eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQY----THLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ |+-..| .+-+.+.+++.|..+.+...+.+.+. +...++||||+.| .. . ...
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~~---~------~~~ 128 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG-ER---P------NDS 128 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec-CC---C------CHH
Confidence 346665 333333 44567888889999988877654332 2356899999998 21 1 123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
..+.+.+.++|+.-|
T Consensus 129 ~~~~l~~~~~P~V~i 143 (333)
T COG1609 129 LLELLAAAGIPVVVI 143 (333)
T ss_pred HHHHHHhcCCCEEEE
Confidence 344445558998644
No 405
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=30.65 E-value=3.5e+02 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=25.6
Q ss_pred ccceeeccCCCCCHHHHHHHHH---HHhCCcEEEEEEeC
Q 039743 224 EDHVICALSGGVDSTVAATLVH---KAIGDRLHCVFVDN 259 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~---k~~g~~v~~v~id~ 259 (531)
.+++++++-|.-.|.-++..+. +..+.+++.+|++.
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~ 41 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDV 41 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEcc
Confidence 3689999888877776654433 33477899999853
No 406
>PRK10116 universal stress protein UspC; Provisional
Probab=30.42 E-value=3.5e+02 Score=23.17 Aligned_cols=35 Identities=6% Similarity=0.139 Sum_probs=25.3
Q ss_pred ccceeeccCCCCCHHHHHHHHH---HHhCCcEEEEEEe
Q 039743 224 EDHVICALSGGVDSTVAATLVH---KAIGDRLHCVFVD 258 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~---k~~g~~v~~v~id 258 (531)
.+++++++-+.-+|.-++..+. +.++.+++.+++-
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~ 40 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLA 40 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEc
Confidence 4689999988888877655443 3457788888873
No 407
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=30.26 E-value=1.3e+02 Score=34.99 Aligned_cols=34 Identities=6% Similarity=-0.104 Sum_probs=28.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeC
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSG 37 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~ 37 (531)
++.+|+|+-.|..-...+++.|.+.|+.+.....
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~ 36 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDL 36 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECC
Confidence 3467999999987777789999999999887653
No 408
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.17 E-value=3.1e+02 Score=26.30 Aligned_cols=46 Identities=4% Similarity=0.065 Sum_probs=29.5
Q ss_pred eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCC
Q 039743 12 DYGSQY----THLITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGG 57 (531)
Q Consensus 12 D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGG 57 (531)
|..+.| ...+.+++++.|..+.+...+.+.+ .+...++||||+.+-
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 8 DIANPFFAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 455544 3346688888999988875443322 122567999999863
No 409
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=30.07 E-value=2.5e+02 Score=27.74 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=38.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC----CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGT----CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~----~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
..|+++.--.+....+.+.-+..|.....-.+. +..-.-....||.||++. | .-+...++.|..-+
T Consensus 72 ~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~D-p---------~~d~qAI~EA~~ln 141 (249)
T PTZ00254 72 ADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTD-P---------RTDHQAIREASYVN 141 (249)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeC-C---------CcchHHHHHHHHhC
Confidence 346666444333444555555566554322111 011001123467777763 1 22345566677779
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
||+.|+|
T Consensus 142 IPvIal~ 148 (249)
T PTZ00254 142 IPVIALC 148 (249)
T ss_pred CCEEEEe
Confidence 9999999
No 410
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=29.94 E-value=2.9e+02 Score=26.48 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=41.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhc--c-ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDD--I-TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~--~-~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+++.--.+....+.+.-+..|.....-.+. -.+-. + ....||.||+..- .-+...++.|..-+
T Consensus 68 ~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp----------~~~~~AI~EA~kl~ 137 (204)
T PRK04020 68 EKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDP----------RGDAQAVKEAIEVG 137 (204)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECC----------cccHHHHHHHHHhC
Confidence 457777544455556666666677655432221 01101 1 1224677777642 12345566777779
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
+|+.|+|
T Consensus 138 IP~Iaiv 144 (204)
T PRK04020 138 IPVVALC 144 (204)
T ss_pred CCEEEEE
Confidence 9999999
No 411
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=29.86 E-value=64 Score=29.71 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC 39 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~ 39 (531)
.+|+||-||+| -+..+.-||+.|+.+.+--...
T Consensus 5 k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~ 37 (165)
T PF07991_consen 5 KTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREG 37 (165)
T ss_dssp SEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TT
T ss_pred CEEEEECCChH-HHHHHHHHHhCCCCEEEEecCC
Confidence 57999999999 7889999999999988765443
No 412
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=29.49 E-value=3.4e+02 Score=24.75 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=43.1
Q ss_pred CEEEEEeCCCCc--HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEE-EcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQY--THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVI-LSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiI-lsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
++|.++-.|.++ .+.+..++...|..+....... ... ...-|.+| +|-++.+ .-..++++.+.++|.
T Consensus 31 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-~~~--~~~~Dv~I~iS~sG~t-------~~~i~~~~~ak~~g~ 100 (179)
T TIGR03127 31 KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT-TPS--IKKGDLLIAISGSGET-------ESLVTVAKKAKEIGA 100 (179)
T ss_pred CEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc-cCC--CCCCCEEEEEeCCCCc-------HHHHHHHHHHHHCCC
Confidence 578888777665 3345677778898887653221 111 12224444 4433221 113466777888999
Q ss_pred cEEEee
Q 039743 83 YVLGIC 88 (531)
Q Consensus 83 PvLGIC 88 (531)
|+++|+
T Consensus 101 ~ii~IT 106 (179)
T TIGR03127 101 TVAAIT 106 (179)
T ss_pred eEEEEE
Confidence 999998
No 413
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.46 E-value=2.4e+02 Score=24.87 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=45.8
Q ss_pred CEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhcc----ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 6 ELVLILDYGSQY----THLITRRIRSLSILSLCLSGTCSLDDI----TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 6 ~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~~----~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
.+|++---|+.. ...+++.|+..|+++.-...+.+.+++ ...++|.|.+|+--. ......+.+++..
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-----~~~~~~~~~~~~L 77 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-----GHLTLVPALRKEL 77 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-----hhHHHHHHHHHHH
Confidence 456665444322 456889999999999887777666553 266899999986432 1222345666666
Q ss_pred HhCC
Q 039743 78 LSNG 81 (531)
Q Consensus 78 ~~~~ 81 (531)
.+++
T Consensus 78 ~~~g 81 (132)
T TIGR00640 78 DKLG 81 (132)
T ss_pred HhcC
Confidence 6654
No 414
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=29.39 E-value=1.6e+02 Score=31.43 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHCCCEEEEEe-CCCChhcc----c--cCCCCEEEEcCCCC
Q 039743 16 QYTHLITRRIRSLSILSLCLS-GTCSLDDI----T--AKNPRVVILSGGPH 59 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~----~--~~~~dgiIlsGGp~ 59 (531)
.+...++++|+++|+.+.... ..++.+.+ . ..++|-||++||-+
T Consensus 20 tN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 20 TNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred chHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 356779999999998766432 22233322 1 35689999999965
No 415
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.35 E-value=2.1e+02 Score=23.91 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.8
Q ss_pred ceeeccCCCCCHHHHHHHHHHHh
Q 039743 226 HVICALSGGVDSTVAATLVHKAI 248 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~ 248 (531)
+++++.+||.-|++++.-+++..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a 24 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGA 24 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47888899999999988777654
No 416
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.90 E-value=1.4e+02 Score=28.57 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChh---cc----ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLD---DI----TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~---~~----~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
+.+.+.+++.|..+.+...+.+.+ .+ ...++||||+.++.. . ...++.+.++++|+.-+
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~----~------~~~~~~~~~~~ipvV~~ 89 (270)
T cd06294 24 RGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRE----D------DPIIDYLKEEKFPFVVI 89 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcC----C------cHHHHHHHhcCCCEEEE
Confidence 345577888998888765443221 11 124699999975321 1 13455566679999754
No 417
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=28.89 E-value=1.6e+02 Score=31.75 Aligned_cols=80 Identities=20% Similarity=0.094 Sum_probs=46.6
Q ss_pred CEEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC--CC-hHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP--AF-PAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~--~~-~~~l~~~~~~~~ 81 (531)
.+++|+|--..+ .+.++|+|.+.|+.|..+-.+. ...+ ....+-+ +.|+. +.+..+.. .. ...+.-.+.+.+
T Consensus 386 frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a-~syi-m~evtkv-fLGah-ailsNG~vysR~GTa~valvAna~n 461 (556)
T KOG1467|consen 386 FRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINA-ASYI-MLEVTKV-FLGAH-AILSNGAVYSRVGTACVALVANAFN 461 (556)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehh-HHHH-HHhccee-eechh-hhhcCcchhhhcchHHHHHHhcccC
Confidence 368999976666 5678999999999988765442 2222 2233444 44543 33333221 11 122333345679
Q ss_pred CcEEEeeH
Q 039743 82 VYVLGICY 89 (531)
Q Consensus 82 iPvLGIC~ 89 (531)
+|||-.|-
T Consensus 462 VPVlVCCE 469 (556)
T KOG1467|consen 462 VPVLVCCE 469 (556)
T ss_pred CCEEEEec
Confidence 99999884
No 418
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=28.73 E-value=3.4e+02 Score=22.57 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=23.1
Q ss_pred ceeeccCCCCCHHHHHHHHHH---HhCCcEEEEEEeCC
Q 039743 226 HVICALSGGVDSTVAATLVHK---AIGDRLHCVFVDNG 260 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k---~~g~~v~~v~id~g 260 (531)
+|+|++.|.-+|.-++..+.. ..+.+++.+|+-..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~ 38 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEV 38 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEec
Confidence 578899888666555444433 23578999998543
No 419
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.38 E-value=2.2e+02 Score=28.20 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=41.9
Q ss_pred EEEEE--eCCCCcH----HHHHHHHHHCCCEEEEEeCCCChhc------cccCCCCEEEEcCCCCCCCCCCCCCChHHHH
Q 039743 7 LVLIL--DYGSQYT----HLITRRIRSLSILSLCLSGTCSLDD------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFL 74 (531)
Q Consensus 7 ~I~Il--D~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~~------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~ 74 (531)
+|+|+ |.-..|. .-+.+.+++.|..+.+...+.+.+. +...++||+|+.+... + .+.+.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~---~------~~~l~ 73 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEN---D------DEELR 73 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSC---T------CHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccC---C------hHHHH
Confidence 46666 5555553 3466777889998888765544321 2357899999994321 1 23343
Q ss_pred HHHHhCCCcEEE
Q 039743 75 EWALSNGVYVLG 86 (531)
Q Consensus 75 ~~~~~~~iPvLG 86 (531)
+. .+.++|+.=
T Consensus 74 ~~-~~~~iPvV~ 84 (279)
T PF00532_consen 74 RL-IKSGIPVVL 84 (279)
T ss_dssp HH-HHTTSEEEE
T ss_pred HH-HHcCCCEEE
Confidence 33 333899863
No 420
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=28.35 E-value=2.7e+02 Score=26.92 Aligned_cols=60 Identities=10% Similarity=-0.114 Sum_probs=37.9
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChh--c-----cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLD--D-----ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~--~-----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.+.+.+.+++.|..+.+...+.+.+ + +...++||||+.+... ....++.+.+.++|++-+
T Consensus 18 ~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~----------~~~~~~~l~~~~iPvv~~ 84 (269)
T cd06297 18 LEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDL----------TERLAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCcc----------ChHHHHHHhhcCCCEEEE
Confidence 3457788888999999887643211 1 1135799999986421 123445556679998654
No 421
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.32 E-value=3.2e+02 Score=27.33 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=39.3
Q ss_pred EEEEE-eCCCCcHH----HHHHHHHHCCCEEEEEeCCCC-hh----ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 7 LVLIL-DYGSQYTH----LITRRIRSLSILSLCLSGTCS-LD----DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 7 ~I~Il-D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~-~~----~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
+|+|+ ..+..... .+.+++ +.|+.+.+-..... .. .....++|.+|.-||-++ +++.
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------------~L~a 68 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------------ILRT 68 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------------HHHH
Confidence 46666 33433333 355556 45777665321110 00 111226799999999653 3444
Q ss_pred HHhCCCcEEEeeHH
Q 039743 77 ALSNGVYVLGICYG 90 (531)
Q Consensus 77 ~~~~~iPvLGIC~G 90 (531)
+.....|||||=.|
T Consensus 69 ~~~~~~PilGIN~G 82 (271)
T PRK01185 69 LQRAKGPILGINMG 82 (271)
T ss_pred HHHcCCCEEEEECC
Confidence 44446799999888
No 422
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.24 E-value=2.4e+02 Score=26.97 Aligned_cols=60 Identities=13% Similarity=-0.046 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCC-hh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 18 THLITRRIRSLSILSLCLSGTCS-LD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~-~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.+.+.+.+++.|..+.+...+.. .+ .+...++||+|+.+... +. . . +..+.++++|+.-+
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~~----~-~-~~~~~~~~ipvv~~ 85 (264)
T cd01574 18 LAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLD----DA----D-A-ALAAAPADVPVVFV 85 (264)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCC----Ch----H-H-HHHHHhcCCCEEEE
Confidence 44466788889999888765422 11 12245799999976421 11 1 1 23345668999765
No 423
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=28.12 E-value=1.6e+02 Score=25.21 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=40.1
Q ss_pred HHHHHHHHHH-CCCEEEEEeC--CCC----hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 18 THLITRRIRS-LSILSLCLSG--TCS----LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 18 ~~~i~r~l~~-~G~~~~v~~~--~~~----~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+..-+++|++ .|+.++.+.. ... .+.+....+|.||-+..|.... . .......+.+.|.+.++|++
T Consensus 33 T~gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~-~-~~~dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 33 TGTTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQ-P-HEPDVKALLRLCDVYNIPLA 105 (115)
T ss_pred echHHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCC-c-ccccHHHHHHHHHHcCCCEE
Confidence 3345778888 8888876643 221 1223366789999887652111 1 01123467788889999986
No 424
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=28.10 E-value=1.1e+02 Score=29.21 Aligned_cols=68 Identities=7% Similarity=0.054 Sum_probs=39.7
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHH-----hC-CcEEEEEEeCCC-CCh----hHHHHHHHHHHHhCCCcE
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKA-----IG-DRLHCVFVDNGL-LRY----KERERVMDTFEKDLHLPV 282 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~-----~g-~~v~~v~id~g~-~~~----~e~~~~~~~la~~lgi~~ 282 (531)
+.+.+.+...+...+++|||---.-++..+... +. .+++.+.+|-+. .+. .....+.+.|+++++++.
T Consensus 9 ~~l~~~i~~~~~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~~l~~~~~~~~ 87 (232)
T cd01399 9 ELIAELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHIDIKP 87 (232)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHHHhhccCCCCH
Confidence 334444544467899999997755555444432 12 578888888443 222 223334455777777664
No 425
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.05 E-value=3e+02 Score=29.31 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=24.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEe
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLS 36 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~ 36 (531)
.+|+|+..|. --.+.++.|.+.|..+.+..
T Consensus 6 k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d 35 (447)
T PRK02472 6 KKVLVLGLAK-SGYAAAKLLHKLGANVTVND 35 (447)
T ss_pred CEEEEEeeCH-HHHHHHHHHHHCCCEEEEEc
Confidence 5789999886 66678999999999888764
No 426
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.79 E-value=1.7e+02 Score=24.53 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=35.8
Q ss_pred EEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhcc----ccCCCCEEEEcCC
Q 039743 7 LVLILDYGSQY----THLITRRIRSLSILSLCLSGTCSLDDI----TAKNPRVVILSGG 57 (531)
Q Consensus 7 ~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~~----~~~~~dgiIlsGG 57 (531)
++++...+..+ ...++..+++.|.++.++..+.+.+++ ...++|.|.+|.-
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 35555555444 456889999999999998776654443 3568999999763
No 427
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=27.50 E-value=1.6e+02 Score=31.12 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=36.0
Q ss_pred CEEEEEeCCC----------------CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 6 ELVLILDYGS----------------QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G~----------------~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
++|.|+--|+ .+...+..+|++.|+.+..+.. .++.+.+. ...+|.||.+||.+
T Consensus 169 ~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 169 PRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred CEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 5678875553 3456788999999998765543 23333221 24589999999965
No 428
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=27.24 E-value=4.5e+02 Score=23.96 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=43.4
Q ss_pred CEEEEEeCCCCc--HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEE-cCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQY--THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVIL-SGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIl-sGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
++|.++-.|+++ ...+.+++...|..+....... ... ...-|.+|+ |-++.+ +. ...+++.+.++|.
T Consensus 34 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-~~~--~~~~D~vI~iS~sG~t------~~-~i~~~~~ak~~g~ 103 (179)
T cd05005 34 KRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETT-TPA--IGPGDLLIAISGSGET------SS-VVNAAEKAKKAGA 103 (179)
T ss_pred CeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCC-CCC--CCCCCEEEEEcCCCCc------HH-HHHHHHHHHHCCC
Confidence 579999888766 3345567777898877654211 111 122244443 333221 11 2456778888999
Q ss_pred cEEEee
Q 039743 83 YVLGIC 88 (531)
Q Consensus 83 PvLGIC 88 (531)
|+++|+
T Consensus 104 ~iI~IT 109 (179)
T cd05005 104 KVVLIT 109 (179)
T ss_pred eEEEEE
Confidence 999987
No 429
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=27.21 E-value=1.7e+02 Score=26.77 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCCCCCCCCCh-HHHHHHHHhCCCcEEEeeHH--------HHHHHHHcCCEEeec
Q 039743 51 VVILSGGPHSVHSPDAPAFP-AGFLEWALSNGVYVLGICYG--------LQLMVQKLDGVVKVG 105 (531)
Q Consensus 51 giIlsGGp~s~~~~~~~~~~-~~l~~~~~~~~iPvLGIC~G--------~Qlla~~~GG~v~~~ 105 (531)
-|+||=|..+...+ ..... .++.+.+.+.++++.+|+.| ++-|+.+.||+....
T Consensus 102 ivliTDG~~~~g~~-~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~ 164 (178)
T cd01451 102 IVVITDGRANVGPD-PTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRL 164 (178)
T ss_pred EEEECCCCCCCCCC-chhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEc
Confidence 55666665432111 11112 34556666789999999987 577888889887664
No 430
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=27.14 E-value=87 Score=30.48 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=35.8
Q ss_pred hhhhhhccccCccceeeccCCCCCHHHHHHHHHH-HhC-CcEEEEEEeCCCCChh
Q 039743 213 EVKCIKDTVGLEDHVICALSGGVDSTVAATLVHK-AIG-DRLHCVFVDNGLLRYK 265 (531)
Q Consensus 213 ~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k-~~g-~~v~~v~id~g~~~~~ 265 (531)
..+.+++.+...+.+.+++|||---..+...+.+ .+. .+++...+|--..+.+
T Consensus 16 i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L~~~~i~w~~v~~f~~DER~Vp~~ 70 (233)
T TIGR01198 16 IATKLQTALAERGQFSLALSGGRSPIALLEALAAQPLDWSRIHLFLGDERYVPLD 70 (233)
T ss_pred HHHHHHHHHHhcCcEEEEECCCccHHHHHHHHhhCCCCcceEEEEEecccccCCC
Confidence 3344555555467899999999777766666654 334 5788888887665443
No 431
>PRK09701 D-allose transporter subunit; Provisional
Probab=27.11 E-value=2.7e+02 Score=27.92 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=41.6
Q ss_pred EEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEe--CCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 7 LVLIL--DYGSQYTHL----ITRRIRSLSILSLCLS--GTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 7 ~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~--~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.|+++ |+...|... +.+.+++.|..+.+.. ...+.+ .+...++||||+.+... + ...+
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~---~----~~~~ 98 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS---V----NLVM 98 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh---H----HHHH
Confidence 46665 555556443 4466677898888763 222221 12245799999986422 1 1112
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
. ++.+.++++|+.-+
T Consensus 99 ~-l~~~~~~giPvV~~ 113 (311)
T PRK09701 99 P-VARAWKKGIYLVNL 113 (311)
T ss_pred H-HHHHHHCCCcEEEe
Confidence 2 34455679998765
No 432
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=27.02 E-value=2.2e+02 Score=29.19 Aligned_cols=75 Identities=20% Similarity=0.145 Sum_probs=45.2
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEE-eCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCL-SGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~-~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+++ ..+..|.. -+.++.+++|+.+.+. |.+.+.+ .+...++|||++++. +.. ...
T Consensus 24 ~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~-----d~~---al~ 95 (336)
T PRK15408 24 ERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV-----SPD---GLC 95 (336)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----CHH---HHH
Confidence 456666 44555533 3557778899988763 3332221 223568999999632 111 123
Q ss_pred HHHHHHHhCCCcEEEee
Q 039743 72 GFLEWALSNGVYVLGIC 88 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC 88 (531)
..++.+.++++||.-+-
T Consensus 96 ~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 96 PALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHCCCeEEEeC
Confidence 56677788899997654
No 433
>PLN02360 probable 6-phosphogluconolactonase
Probab=26.76 E-value=98 Score=30.83 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=29.4
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHH-----hC-CcEEEEEEeCCCCChh
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKA-----IG-DRLHCVFVDNGLLRYK 265 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~-----~g-~~v~~v~id~g~~~~~ 265 (531)
+.++..+.+.+.+.+|||||-- .-+...+.+. +. .+++...+|--..+.+
T Consensus 32 ~~~~~a~~~~~~~~lalsGGS~-~~~~~~L~~~~~~~~idW~~v~~f~~DER~Vp~~ 87 (268)
T PLN02360 32 ELSEASVKERGVFAIALSGGSL-ISFMGKLCEAPYNKTVDWAKWYIFWADERVVAKN 87 (268)
T ss_pred HHHHHHHHhCCcEEEEECCCCH-HHHHHHHhccccccCCCCceEEEEeeecccCCCC
Confidence 3344444446789999999953 2222223321 23 4688888887665544
No 434
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=26.71 E-value=49 Score=33.25 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=24.6
Q ss_pred cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 46 AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
..++|.+|.-||-++ .....+.+...++|||||=.|.
T Consensus 74 ~~~~D~ii~lGGDGT---------~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGT---------FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHHH---------HHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCHH---------HHHHHHHhccCCCcEEeecCCC
Confidence 468999999999552 2334444334589999998763
No 435
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=26.67 E-value=1.2e+02 Score=31.34 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=46.4
Q ss_pred eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh----CCCcEEEe
Q 039743 12 DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS----NGVYVLGI 87 (531)
Q Consensus 12 D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~----~~iPvLGI 87 (531)
+..++|.+.+++++++.|..+++..+..--.+. +-.-.+...|-. ++ ...+++...+ +.+-..|+
T Consensus 87 ~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~---n~~p~~yh~G~t----~D----~~~~l~~l~~~~~~r~~~avG~ 155 (345)
T COG0429 87 SSNSPYARGLMRALSRRGWLVVVFHFRGCSGEA---NTSPRLYHSGET----ED----IRFFLDWLKARFPPRPLYAVGF 155 (345)
T ss_pred CCcCHHHHHHHHHHHhcCCeEEEEecccccCCc---ccCcceecccch----hH----HHHHHHHHHHhCCCCceEEEEe
Confidence 666788999999999999999887664321111 111233333321 11 1244444443 23456889
Q ss_pred eHHHHHHHHHcC
Q 039743 88 CYGLQLMVQKLD 99 (531)
Q Consensus 88 C~G~Qlla~~~G 99 (531)
-+|.-+|+..+|
T Consensus 156 SLGgnmLa~ylg 167 (345)
T COG0429 156 SLGGNMLANYLG 167 (345)
T ss_pred cccHHHHHHHHH
Confidence 999988887765
No 436
>PRK06696 uridine kinase; Validated
Probab=26.44 E-value=1.1e+02 Score=29.26 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=32.0
Q ss_pred hhhhhhhhhccccCccceeeccCCCCCH--HHHHHHHHHHh---CCcEEEEEEeCCCCCh
Q 039743 210 LDEEVKCIKDTVGLEDHVICALSGGVDS--TVAATLVHKAI---GDRLHCVFVDNGLLRY 264 (531)
Q Consensus 210 ~~~~~~~i~~~v~~~~kvvvalSGGvDS--~v~a~l~~k~~---g~~v~~v~id~g~~~~ 264 (531)
++++.+.+.+.- .....+|++||+.=| |++|..+.+.+ |..++.+++|.-+.+.
T Consensus 7 ~~~la~~~~~~~-~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 7 IKELAEHILTLN-LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred HHHHHHHHHHhC-CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 334444443322 256789999886543 45555555666 5567777788766543
No 437
>PRK03670 competence damage-inducible protein A; Provisional
Probab=26.35 E-value=1.4e+02 Score=29.59 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHCCCEEEEEeC-CCChhcc----c--cC-CCCEEEEcCCCCC
Q 039743 16 QYTHLITRRIRSLSILSLCLSG-TCSLDDI----T--AK-NPRVVILSGGPHS 60 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~----~--~~-~~dgiIlsGGp~s 60 (531)
.+...++++|+++|+.+..... .++.+.+ . .. .+|.||++||-+.
T Consensus 20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGp 72 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGP 72 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccC
Confidence 3456789999999997664332 2232222 1 22 4799999999764
No 438
>PRK06455 riboflavin synthase; Provisional
Probab=26.30 E-value=2.3e+02 Score=25.85 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=40.6
Q ss_pred CCEEEEEeCCCCcHH---HHHHHHHHCC--CEEEEEeCCCChhc------c-ccCCCCEEEEcCCCCCCCCCCC--CCCh
Q 039743 5 PELVLILDYGSQYTH---LITRRIRSLS--ILSLCLSGTCSLDD------I-TAKNPRVVILSGGPHSVHSPDA--PAFP 70 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~---~i~r~l~~~G--~~~~v~~~~~~~~~------~-~~~~~dgiIlsGGp~s~~~~~~--~~~~ 70 (531)
|.+|+|+|---.... -..+.|++.| ....++...-..+- + ...++|++|-.|-.+...-.+. ....
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS 80 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEAS 80 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHH
Confidence 467888873322211 2336677744 55555544332221 1 1357999999996542111110 0111
Q ss_pred HHHHHHHHhCCCcEEE
Q 039743 71 AGFLEWALSNGVYVLG 86 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLG 86 (531)
..+.+..++.++||.=
T Consensus 81 ~GL~~lsL~t~~PVi~ 96 (155)
T PRK06455 81 IGLIMAQLMTNKHIIE 96 (155)
T ss_pred HHHHHHHhhhCCCEEE
Confidence 2455555566777753
No 439
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=26.29 E-value=1.8e+02 Score=31.00 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=35.1
Q ss_pred CEEEEEeCCC----------------CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 6 ELVLILDYGS----------------QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G~----------------~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
++|+|+--|+ .+...+..++++.|+++..... .++.+.+. ..++|.||.+||-+
T Consensus 178 prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 178 VRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred CEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 5788875543 2244688899999997765432 23333321 34689999999965
No 440
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=3.2e+02 Score=27.78 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=45.6
Q ss_pred EEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC--CC-hHHHHHHHHhCCC
Q 039743 7 LVLILDYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP--AF-PAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~--~~-~~~l~~~~~~~~i 82 (531)
+|.|.+-=..+ .+..++.|++.|+++++++...- -....++|.+++ |..++..++.. +. -..+.-.|.+.++
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~--~~~~~~vd~Viv--Gad~I~~nG~lvnkiGT~~lA~~A~e~~~ 222 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAV--GAFMSRVDKVLV--GADAILANGALVNKIGTSPLALAARELRV 222 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEEechHH--HHHHHhCCEEEE--CccceecCCcEEeccchHHHHHHHHHhCC
Confidence 56666532222 56789999999999998864321 122355677776 33334333210 11 1234445667899
Q ss_pred cEEEee
Q 039743 83 YVLGIC 88 (531)
Q Consensus 83 PvLGIC 88 (531)
|++-.|
T Consensus 223 Pf~v~a 228 (301)
T COG1184 223 PFYVVA 228 (301)
T ss_pred CEEEEe
Confidence 999877
No 441
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.00 E-value=1.3e+02 Score=26.15 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=29.9
Q ss_pred hhccccCccceeeccCCCCCH----------HHHHHHHHHHh---CCcEEEEEEeCCCCC
Q 039743 217 IKDTVGLEDHVICALSGGVDS----------TVAATLVHKAI---GDRLHCVFVDNGLLR 263 (531)
Q Consensus 217 i~~~v~~~~kvvvalSGGvDS----------~v~a~l~~k~~---g~~v~~v~id~g~~~ 263 (531)
..+.+..++++.++|+|++|- ..+--+..+++ +.+++.|+++-|.++
T Consensus 18 ~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 18 TLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCC
Confidence 333355467799999999943 22223334443 577888888877654
No 442
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.98 E-value=1.7e+02 Score=26.74 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=42.7
Q ss_pred hhhhccc--cCccceeeccCC---CCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 215 KCIKDTV--GLEDHVICALSG---GVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 215 ~~i~~~v--~~~~kvvvalSG---GvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
+.+++.+ ....+|++.... |-|-.++|-.|++. |.+|..+.+...-...++.+...+ +++.+|++...
T Consensus 14 ~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~ 86 (169)
T PF03853_consen 14 ELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANR-GYNVTVYLVGPPEKLSEDAKQQLE-ILKKMGIKIIE 86 (169)
T ss_dssp HHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHT-TCEEEEEEEESSSSTSHHHHHHHH-HHHHTT-EEES
T ss_pred HHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHC-CCeEEEEEEeccccCCHHHHHHHH-HHHhcCCcEee
Confidence 3444444 334556665544 45888888888776 999988777665555566666666 66777866543
No 443
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=25.91 E-value=3.5e+02 Score=24.41 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHH----HHCCCEEEEEeCCCChh---ccc--cCCCCEEEEcCCCC
Q 039743 13 YGSQYTHLITRRI----RSLSILSLCLSGTCSLD---DIT--AKNPRVVILSGGPH 59 (531)
Q Consensus 13 ~G~~~~~~i~r~l----~~~G~~~~v~~~~~~~~---~~~--~~~~dgiIlsGGp~ 59 (531)
||+.....+.+.+ .++|+.++....+..-+ .+. ..++|||||-.|..
T Consensus 23 YG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~ 78 (146)
T PRK05395 23 YGSTTLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAY 78 (146)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHH
Confidence 5555544444444 45688888876654221 122 23689999987754
No 444
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=25.72 E-value=1.3e+02 Score=27.79 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCEE---EEEeCCCCh--hccc---cCCCCEEEEcCCCCC
Q 039743 18 THLITRRIRSLSILS---LCLSGTCSL--DDIT---AKNPRVVILSGGPHS 60 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~---~v~~~~~~~--~~~~---~~~~dgiIlsGGp~s 60 (531)
...+..+|+++|.++ .++|-+... ..+. ...+|.|+.+||.+-
T Consensus 29 G~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~ 79 (169)
T COG0521 29 GPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGI 79 (169)
T ss_pred hhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccC
Confidence 567899999999865 344433210 1111 223899999999873
No 445
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=25.26 E-value=5e+02 Score=25.82 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=42.1
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ +....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+... . ...
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~-----~~~ 131 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMP----P-----EDA 131 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC----C-----ChH
Confidence 456666 54554533 355667788999888765433221 2245799999975421 0 123
Q ss_pred HHHHHHhCCCcEEE
Q 039743 73 FLEWALSNGVYVLG 86 (531)
Q Consensus 73 l~~~~~~~~iPvLG 86 (531)
.++.+.+.++|+.-
T Consensus 132 ~~~~l~~~~iPvV~ 145 (327)
T TIGR02417 132 YYQKLQNEGLPVVA 145 (327)
T ss_pred HHHHHHhcCCCEEE
Confidence 34445556899863
No 446
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.14 E-value=3.2e+02 Score=29.19 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=35.2
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC------CChhHHHHHHHHHHHhCCCcE--EEEEC
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL------LRYKERERVMDTFEKDLHLPV--TCVDA 287 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~------~~~~e~~~~~~~la~~lgi~~--~vvd~ 287 (531)
+=|.+|||++.++.- +..+|.+...+|.-+.. +...+++...+ .++..|+.. .++.+
T Consensus 135 aHvSiaGG~~~a~~~---a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~-~~~~~gi~~~~i~~Ha 199 (413)
T PTZ00372 135 AHVSASGGVDNSPIN---AYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKE-NCKKYNYDPKFILPHG 199 (413)
T ss_pred EEEeccccHHHHHHH---HHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHH-HHHHcCCCcceEEeec
Confidence 445679999986433 22358888889986553 23345555555 677777753 44444
No 447
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=24.72 E-value=2.6e+02 Score=29.98 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=48.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC--hhccc--------------cCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCS--LDDIT--------------AKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~--~~~~~--------------~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
|.++-.|+.-...+++.|.+.|..+........ .+.+. ..++|-||+|.|-. ++ .
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~----~~----~- 72 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIK----DD----N- 72 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCC----CC----C-
Confidence 677777776666689999999988877653221 01110 12467777765533 11 1
Q ss_pred HHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 72 GFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
..++.+.++++||++= .+++++..
T Consensus 73 p~~~~a~~~~i~v~~~---~el~~~~~ 96 (448)
T TIGR01082 73 PEIVEAKERGIPVIRR---AEMLAELM 96 (448)
T ss_pred HHHHHHHHcCCceEeH---HHHHHHHH
Confidence 3456667789999863 56666554
No 448
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=24.62 E-value=3.6e+02 Score=25.66 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=51.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC----Chh----c-cccCCCCEEEEcCCCCCCCCCCCCCChHHHHH
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC----SLD----D-ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLE 75 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~----~~~----~-~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~ 75 (531)
|++|++.- .......+++.|++.|+++..+|.-. +.. . ....++|.||++...+ ...+++
T Consensus 1 ~~~ilitr-~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a----------v~~~~~ 69 (249)
T PRK05928 1 MMKILVTR-PSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA----------VEFLLS 69 (249)
T ss_pred CCEEEEeC-CHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH----------HHHHHH
Confidence 35666663 44556778999999999888776321 111 0 1246789999985432 122222
Q ss_pred HHH------hCCCcEEEeeHHHHHHHHHcCCEE
Q 039743 76 WAL------SNGVYVLGICYGLQLMVQKLDGVV 102 (531)
Q Consensus 76 ~~~------~~~iPvLGIC~G~Qlla~~~GG~v 102 (531)
.+. -.+.+++.|.-.-.-..+..|..+
T Consensus 70 ~~~~~~~~~~~~~~~~avG~~Ta~~l~~~G~~~ 102 (249)
T PRK05928 70 ALKKKKLKWPKNKKYAAIGEKTALALKKLGGKV 102 (249)
T ss_pred HHHhcCcCCCCCCEEEEECHHHHHHHHHcCCCc
Confidence 221 135677777666666666566543
No 449
>PRK06242 flavodoxin; Provisional
Probab=24.60 E-value=2.9e+02 Score=24.25 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=27.0
Q ss_pred EEEEEeCC--CCcHHHHHHHHHH-CCCEEEEEeCCC-ChhccccCCCCEEEEcCCC
Q 039743 7 LVLILDYG--SQYTHLITRRIRS-LSILSLCLSGTC-SLDDITAKNPRVVILSGGP 58 (531)
Q Consensus 7 ~I~IlD~G--~~~~~~i~r~l~~-~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp 58 (531)
+++|+=+. .+++..+|+.+.+ +++ ++++... ..++ ..++|.||+ |+|
T Consensus 2 k~~IiY~S~~tGnT~~~A~~ia~~l~~--~~~~i~~~~~~~--~~~~d~ii~-g~p 52 (150)
T PRK06242 2 KALIVYASVHHGNTEKIAKAIAEVLDA--EVIDPGDVNPED--LSEYDLIGF-GSG 52 (150)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHhcCc--EEecHHHCCccc--HhHCCEEEE-eCc
Confidence 46666443 3689999998865 343 3443221 1112 357898887 444
No 450
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.60 E-value=98 Score=31.25 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=36.0
Q ss_pred ccceeeccCCCCCHHHHHHHHHHH----hCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECc
Q 039743 224 EDHVICALSGGVDSTVAATLVHKA----IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~----~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~ 288 (531)
..|++|..||+ .|.+- +|+... ++.++.+|..|+. .+.. +|+++|||+.+++.+
T Consensus 89 ~~ri~vl~Sg~-gsnl~-al~~~~~~~~~~~~i~~visn~~--------~~~~-lA~~~gIp~~~~~~~ 146 (286)
T PRK06027 89 RKRVVILVSKE-DHCLG-DLLWRWRSGELPVEIAAVISNHD--------DLRS-LVERFGIPFHHVPVT 146 (286)
T ss_pred CcEEEEEEcCC-CCCHH-HHHHHHHcCCCCcEEEEEEEcCh--------hHHH-HHHHhCCCEEEeccC
Confidence 46899999999 45444 344322 2457777776642 3333 688999999888654
No 451
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=24.45 E-value=2.3e+02 Score=30.12 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=47.5
Q ss_pred ccCCCCCHHHHHHHHHHHh---C-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCC
Q 039743 230 ALSGGVDSTVAATLVHKAI---G-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGV 298 (531)
Q Consensus 230 alSGGvDS~v~a~l~~k~~---g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~ 298 (531)
|=-|-==.|++|.|+++.. + .+|--++.|+- |-+-.++... +|+-+|+|++++.....|...+..+
T Consensus 210 GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY--RIGA~EQLk~-Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 210 GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY--RIGAVEQLKT-YADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc--hhhHHHHHHH-HHHHhCCceEEecCHHHHHHHHHHh
Confidence 3344445777888888765 2 57888999875 3455566554 8999999999999988877666444
No 452
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=24.40 E-value=1e+02 Score=29.77 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.7
Q ss_pred CCcEEEeeHHHHHHHHHcCCE
Q 039743 81 GVYVLGICYGLQLMVQKLDGV 101 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~ 101 (531)
.+||.|||--.-+.+...|-+
T Consensus 91 ~~PviGi~eAsv~~A~~vgrr 111 (230)
T COG4126 91 AIPVIGICEASVLAALFVGRR 111 (230)
T ss_pred CCCceehhHHHHHHHHHhcce
Confidence 899999999888888776654
No 453
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=23.24 E-value=3e+02 Score=29.84 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=26.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC 39 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~ 39 (531)
++||||+. +++....++++++++|.++.++-.+.
T Consensus 2 ~~kvLi~~-~geia~~ii~a~~~~Gi~~v~v~~~~ 35 (472)
T PRK07178 2 IKKILIAN-RGEIAVRIVRACAEMGIRSVAIYSEA 35 (472)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46899995 44667789999999999998875543
No 454
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.12 E-value=2.9e+02 Score=24.48 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhccc----cCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 5 PELVLILDYGSQY----THLITRRIRSLSILSLCLSGTCSLDDIT----AKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 5 ~~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~~~----~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
.++|++--.++.. ...++..+|..|+++..+-.+.+.+++. ..++|.|.+|---.+ .....+++++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~-----~~~~~~~~~~~ 77 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGH-----GEIDCRGLREK 77 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCcccc-----CHHHHHHHHHH
Confidence 3566666444333 4467899999999999988888877653 568999999753221 11112455665
Q ss_pred HHhC
Q 039743 77 ALSN 80 (531)
Q Consensus 77 ~~~~ 80 (531)
..+.
T Consensus 78 L~~~ 81 (137)
T PRK02261 78 CIEA 81 (137)
T ss_pred HHhc
Confidence 5554
No 455
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.11 E-value=2.7e+02 Score=33.74 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCEEEEEeCCCC---------c-HHHHHHHHHHCCCEEEEEeCC
Q 039743 5 PELVLILDYGSQ---------Y-THLITRRIRSLSILSLCLSGT 38 (531)
Q Consensus 5 ~~~I~IlD~G~~---------~-~~~i~r~l~~~G~~~~v~~~~ 38 (531)
.++|+||.-|.. | +...+++++++|.++.++.++
T Consensus 554 ~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~n 597 (1066)
T PRK05294 554 RKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCN 597 (1066)
T ss_pred CceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCC
Confidence 368999987652 2 334679999999998887543
No 456
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=23.08 E-value=1.5e+02 Score=29.33 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCCCC----C-CCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCC
Q 039743 47 KNPRVVILSGGPHSVHSPD----A-PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS 121 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~----~-~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~ 121 (531)
.-+|.++|+||-+-++.=. . ....+.+++. .+|. | +...+.+|....-+...+++
T Consensus 69 ~f~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~----~~P~-------~---------~~~~evPeINam~ldP~enS 128 (325)
T KOG0649|consen 69 AFHDDFLLSGGDGLVYGWEWNEEEESLATKRLWEV----KIPM-------Q---------VDAVEVPEINAMWLDPSENS 128 (325)
T ss_pred eeehhheeeccCceEEEeeehhhhhhccchhhhhh----cCcc-------c---------cCcccCCccceeEeccCCCc
Confidence 4469999999987665321 0 0011223333 5552 2 22234556655555545566
Q ss_pred ccccC---------CCCCceEEEEeeccCccccCC---CCcEEEEEeCCCcEEEEEECCCc---EEEEecCCCCCCCccc
Q 039743 122 GIFGN---------KKVGHHQVVWMSHGDEAVVLP---DGFEVVARSQQGAVAAVENREKR---LFGLQYHPEVTHSPEG 186 (531)
Q Consensus 122 ~l~~~---------~~~~~~~~v~~~H~~~v~~lp---~g~~vla~s~~~~v~ai~~~~~~---i~gvQFHPE~~~~~~g 186 (531)
.+|.+ +.+....+++.-|.|.+..+. ..-+++.-++|+.+-.-.-+..+ ..+.|=|||......|
T Consensus 129 i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 66655 111222356778999885442 24467777788876665443332 6789999998875566
Q ss_pred chh
Q 039743 187 MET 189 (531)
Q Consensus 187 ~~i 189 (531)
+.|
T Consensus 209 ~wi 211 (325)
T KOG0649|consen 209 KWI 211 (325)
T ss_pred cee
Confidence 644
No 457
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=22.47 E-value=3.6e+02 Score=22.16 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=36.5
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHh---CC--cEEEEEEe--------------CCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAI---GD--RLHCVFVD--------------NGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~---g~--~v~~v~id--------------~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
.++++++.++|+=|+.++.-+.+.+ |. ++.+..+. ..+. ..+.+++++ .++..|+|...
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi-~~~~~~i~~-~~~~~~ipv~~ 80 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQV-AYMLPDLKK-ETDKKGIPVEV 80 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchH-HHHHHHHHH-HhhhcCCCEEE
Confidence 4589999999999998776665543 33 23333221 0111 123344444 45667888888
Q ss_pred EECc
Q 039743 285 VDAT 288 (531)
Q Consensus 285 vd~~ 288 (531)
|+..
T Consensus 81 I~~~ 84 (95)
T TIGR00853 81 INGA 84 (95)
T ss_pred eChh
Confidence 7664
No 458
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.37 E-value=2.4e+02 Score=23.74 Aligned_cols=64 Identities=17% Similarity=0.038 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCEEEEEeC-CC--C--h-hcccc-CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 20 LITRRIRSLSILSLCLSG-TC--S--L-DDITA-KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~-~~--~--~-~~~~~-~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
--+++|++.|+.++.+.. .. . . +-+.. .++|.||-...+.... ........+.+.|.+.++|++
T Consensus 33 gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~--~~~~dg~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 33 GTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDR--CTDEDGTALLRLARLYKIPVT 103 (112)
T ss_pred HHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCccc--ccCCChHHHHHHHHHcCCCEE
Confidence 357788888888776532 22 1 1 22335 6789998865433210 011223467788889999986
No 459
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=22.17 E-value=3.5e+02 Score=27.37 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=40.8
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCC-EEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSI-LSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~-~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
..|+++ |++..|... +.+.+++.|. .+.+.....+.+ .+...++||+|+.+.... ...
T Consensus 25 ~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--------~~~ 96 (330)
T PRK15395 25 TRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA--------AAP 96 (330)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHH--------HHH
Confidence 445554 666656444 4466666764 444434332221 122458999999865321 123
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
..++.+.+.++|+.=+
T Consensus 97 ~~l~~l~~~giPvV~v 112 (330)
T PRK15395 97 TVIEKARGQDVPVVFF 112 (330)
T ss_pred HHHHHHHHCCCcEEEE
Confidence 4556666779998643
No 460
>PRK08462 biotin carboxylase; Validated
Probab=22.17 E-value=3.1e+02 Score=29.29 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=46.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
.|+||||++-|- ..-.+.+..+++|.++..+-.+.+.......-.|-.+..|+..+ ++ ...-...+++.+.+.++-
T Consensus 3 ~~k~ili~~~g~-~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~--~~-~y~~~~~l~~~~~~~~~D 78 (445)
T PRK08462 3 EIKRILIANRGE-IALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKS--SE-SYLNIPAIISAAEIFEAD 78 (445)
T ss_pred CCCEEEEECCcH-HHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCch--hc-ccCCHHHHHHHHHHcCCC
Confidence 367999998664 35568899999999988774332221111122354444433221 11 111135677877777755
Q ss_pred EEEeeHH
Q 039743 84 VLGICYG 90 (531)
Q Consensus 84 vLGIC~G 90 (531)
.+=.++|
T Consensus 79 ~i~pg~g 85 (445)
T PRK08462 79 AIFPGYG 85 (445)
T ss_pred EEEECCC
Confidence 4444444
No 461
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.12 E-value=3.7e+02 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChhcc----ccCCCCEEEEcCC
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLDDI----TAKNPRVVILSGG 57 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~~~----~~~~~dgiIlsGG 57 (531)
..++..++..|+++..+..+.+.+++ ...++|.|.||..
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 45789999999999777666666554 2668999999875
No 462
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=22.03 E-value=2.5e+02 Score=27.16 Aligned_cols=58 Identities=16% Similarity=0.011 Sum_probs=36.7
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
...+.+++++.|..+.+...+.+... ...++||+|+.+. . + ...++.+.+.++|+.-+
T Consensus 23 ~~gi~~~~~~~g~~~~~~~~~~~~~~-~~~~vdgii~~~~-~---~-------~~~~~~~~~~~~pvV~~ 80 (270)
T cd01544 23 RLGIEKRAQELGIELTKFFRDDDLLE-ILEDVDGIIAIGK-F---S-------QEQLAKLAKLNPNLVFV 80 (270)
T ss_pred HHHHHHHHHHcCCEEEEEeccchhHH-hccCcCEEEEecC-C---C-------HHHHHHHHhhCCCEEEE
Confidence 33466888889999988765433222 3567999999742 1 1 13344555568998765
No 463
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.94 E-value=2.3e+02 Score=28.73 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHCCCEEEEEeCCCC--hhc----cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 17 YTHLITRRIRSLSILSLCLSGTCS--LDD----ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~~~~--~~~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
+...+...|++.|.+..+...... ..+ +...++|.||..||-+++ .+++.-..+.+.|.|||
T Consensus 21 ~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv---------~evingl~~~~~~~Lgi 88 (301)
T COG1597 21 LLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTV---------NEVANGLAGTDDPPLGI 88 (301)
T ss_pred HHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchH---------HHHHHHHhcCCCCceEE
Confidence 355677888889998887765443 222 224579999999997754 23444444445554554
No 464
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=21.83 E-value=82 Score=35.24 Aligned_cols=157 Identities=19% Similarity=0.115 Sum_probs=71.3
Q ss_pred HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHH---HHHHHhCCCcEEEeeHH-------
Q 039743 21 ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGF---LEWALSNGVYVLGICYG------- 90 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l---~~~~~~~~iPvLGIC~G------- 90 (531)
+..+|..+-++++.+.++.-.+.-.+.++|-||=.|..++.+..+..|.++.+ ++....+|-=++||+-=
T Consensus 470 ilEaLSGlp~dV~FISFdDi~~~gi~~didViINaGdA~TA~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGEPsA~~~~g 549 (716)
T PF09508_consen 470 ILEALSGLPFDVEFISFDDIRENGILEDIDVIINAGDAGTAWSGGENWKDPKIVTALREFVYNGGGFIGVGEPSAHQGQG 549 (716)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHH-S-TT--EEEEEESTTSTTT-GGGGG-HHHHHHHHHHHHTT-EEEEEESTEEEEETT
T ss_pred HHHHhcCCCceeEEecHHHHhhcCCcccCCEEEecCcccccccCccccCCHHHHHHHHHHHHcCCCEEEcCCCccccCCC
Confidence 44566666788888876543332125778999999988888877766766644 45556678888888621
Q ss_pred --HHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE-EC
Q 039743 91 --LQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE-NR 167 (531)
Q Consensus 91 --~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~-~~ 167 (531)
+| |+..||-.-+.......+....+..+++-+.+++... +..-..- ..|..+++..++|+..+.....|.. ..
T Consensus 550 ~~Fq-LadVLGVDkE~g~tl~~dky~~~~~~~HFI~~d~~~~--~dfGe~~-~~iy~~~~~t~vL~~~~~~v~la~n~yG 625 (716)
T PF09508_consen 550 RFFQ-LADVLGVDKETGFTLSTDKYNWEVEPEHFITEDIDGE--LDFGEGK-KNIYALSGDTEVLAQSDGEVQLAVNEYG 625 (716)
T ss_dssp EEET-THHHHSEEE--SS-TTB--B------S-TTTTTS-----S---S---TTEEESSTTSEEEE-GTTS-SEEEEEET
T ss_pred eEEe-ehhccCcccccccccccCcCCCcCCCCceeecCCCcC--cccCCCc-CceEEcCCCeEEeeecCCeEEEEecccC
Confidence 22 3334444333332223333333444444455555432 1111110 2234566678888887655444443 23
Q ss_pred CC-cEE--EEecCCCCC
Q 039743 168 EK-RLF--GLQYHPEVT 181 (531)
Q Consensus 168 ~~-~i~--gvQFHPE~~ 181 (531)
++ .+| |+++-||-+
T Consensus 626 kGR~VYlaGlpyS~~Nt 642 (716)
T PF09508_consen 626 KGRGVYLAGLPYSPENT 642 (716)
T ss_dssp TEEEEEES-----HHHH
T ss_pred CccEEEeCCCCCCHHHH
Confidence 33 355 888877643
No 465
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=21.77 E-value=3e+02 Score=23.19 Aligned_cols=76 Identities=20% Similarity=0.120 Sum_probs=41.4
Q ss_pred CEEEEEeCCCCc--HHHHHHHHHHCCCEEEEEeCCCChhc-cc-cCCCCEEE-EcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 6 ELVLILDYGSQY--THLITRRIRSLSILSLCLSGTCSLDD-IT-AKNPRVVI-LSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~r~l~~~G~~~~v~~~~~~~~~-~~-~~~~dgiI-lsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
++|.++-.|.++ ...+++.++..|..+..++....... .. ...-|.+| +|-+..+ ....++++.+.++
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~-------~~~~~~~~~a~~~ 86 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-------KETVEAAEIAKER 86 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCC-------HHHHHHHHHHHHc
Confidence 568887766655 33355677788887776543221111 11 11224333 3332221 1124566778888
Q ss_pred CCcEEEee
Q 039743 81 GVYVLGIC 88 (531)
Q Consensus 81 ~iPvLGIC 88 (531)
+.|+++|+
T Consensus 87 g~~iv~iT 94 (139)
T cd05013 87 GAKVIAIT 94 (139)
T ss_pred CCeEEEEc
Confidence 99999987
No 466
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=21.66 E-value=2.1e+02 Score=26.67 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=24.8
Q ss_pred HHHHH-HHHHHHcCCCCcccEEEecCCCCCCCccc
Q 039743 497 KFLDD-VARKICNTVRGVNRVVQDITSKPPSTIEW 530 (531)
Q Consensus 497 ~~l~~-~~~~i~~~~~~v~rv~~d~~~k~p~~~~~ 530 (531)
+.|.+ +..++ ..++||..|-.+++.+||=+.+|
T Consensus 130 ~~L~~dV~~aL-~~l~gV~~V~V~l~~dp~W~~~~ 163 (174)
T TIGR03406 130 PVLVEDVEDKV-LAVPNVDEVEVELVFDPPWSREM 163 (174)
T ss_pred HHHHHHHHHHH-HhCCCceeEEEEEEecCCCChHH
Confidence 33444 55555 67899999999999999966654
No 467
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=21.65 E-value=1e+02 Score=27.29 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHCCCEEEEEe-CCCChhccc------cCCCCEEEEcCCCC
Q 039743 16 QYTHLITRRIRSLSILSLCLS-GTCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
.+...+.+.|++.|+++.... ..++.+.+. ..+.|.||.+||-+
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred hHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcC
Confidence 346678999999998765322 122333321 24679999999976
No 468
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=21.42 E-value=1.2e+02 Score=30.32 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCcEEEeeHH--------------------HHHHHHHcCCEEee
Q 039743 71 AGFLEWALSNGVYVLGICYG--------------------LQLMVQKLDGVVKV 104 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~G--------------------~Qlla~~~GG~v~~ 104 (531)
.++++.+.+++++|..|.+| ||-||..-||+...
T Consensus 184 ~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~ 237 (296)
T TIGR03436 184 ERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFY 237 (296)
T ss_pred HHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEec
Confidence 45677777889999999986 78888889998655
No 469
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.23 E-value=1.8e+02 Score=27.70 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=49.8
Q ss_pred CEEEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCCh--hccc--cCCCCEEEEcCCCCCCCCCC--------------C
Q 039743 6 ELVLILDYG-SQYTHLITRRIRSLSILSLCLSGTCSL--DDIT--AKNPRVVILSGGPHSVHSPD--------------A 66 (531)
Q Consensus 6 ~~I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~~--~~~~--~~~~dgiIlsGGp~s~~~~~--------------~ 66 (531)
+-|.|+..- ......+++.+.+.|+.+.=++++.+. +.+. ...++.+++. .+++.+.+ +
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vG--AGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVG--AGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEe--eEeCcCHHHHHHHHHcCCCEEEC
Confidence 346666422 222446889999999987767776542 2221 2234455553 33454431 4
Q ss_pred CCChHHHHHHHHhCCCcEEEee
Q 039743 67 PAFPAGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC 88 (531)
|.+.+++++.+.+.++|++==|
T Consensus 83 P~~~~~vi~~a~~~~i~~iPG~ 104 (201)
T PRK06015 83 PGTTQELLAAANDSDVPLLPGA 104 (201)
T ss_pred CCCCHHHHHHHHHcCCCEeCCC
Confidence 6778899999999999987433
No 470
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.19 E-value=1.2e+02 Score=26.68 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=45.9
Q ss_pred CEEEEEeCCC---CcHHHHH----HHHHHCCCEEEEEeCCCC---------------h---hccc--cCCCCEEEEcCCC
Q 039743 6 ELVLILDYGS---QYTHLIT----RRIRSLSILSLCLSGTCS---------------L---DDIT--AKNPRVVILSGGP 58 (531)
Q Consensus 6 ~~I~IlD~G~---~~~~~i~----r~l~~~G~~~~v~~~~~~---------------~---~~~~--~~~~dgiIlsGGp 58 (531)
+||++|.... +++..++ +.+++.|++++++..... . +++. ..+.|+||+. .|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~-sP 79 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA-SP 79 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE-EE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe-ec
Confidence 4688885332 3455444 455567899998865431 0 1111 3457999984 33
Q ss_pred CCCCCCCCCCChHHHHHHHH---h---CCCcEEEeeHH
Q 039743 59 HSVHSPDAPAFPAGFLEWAL---S---NGVYVLGICYG 90 (531)
Q Consensus 59 ~s~~~~~~~~~~~~l~~~~~---~---~~iPvLGIC~G 90 (531)
. |....+...+.+++++. . .++|+..++.|
T Consensus 80 ~--y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 80 V--YNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp E--BTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred E--EcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 3 33333334456666653 1 47899888654
No 471
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=21.14 E-value=79 Score=31.21 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
.++|.+|.-||-++. ....+.+...++|||||=.|.
T Consensus 24 ~~~Dlvi~iGGDGTl---------L~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDGFM---------LQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCHHH---------HHHHHHhcCCCCeEEEEeCCC
Confidence 346999999996632 233444445689999998774
No 472
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=21.09 E-value=4.3e+02 Score=25.09 Aligned_cols=65 Identities=11% Similarity=-0.064 Sum_probs=37.2
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCC---hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCS---LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~---~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
+..+.|.. .+.+++++.|..+.+...... .+.+...++||||+.+... . ...++.+.++++|+
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-----~-----~~~~~~~~~~~ipv 77 (261)
T cd06272 8 SVSRVALTELVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGESA-----S-----DVEYLYKIKLAIPV 77 (261)
T ss_pred CCCchhHHHHHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCCCC-----C-----hHHHHHHHHcCCCE
Confidence 55555544 455666778988877654311 1112256899999975311 1 12244555678997
Q ss_pred EE
Q 039743 85 LG 86 (531)
Q Consensus 85 LG 86 (531)
.-
T Consensus 78 V~ 79 (261)
T cd06272 78 VS 79 (261)
T ss_pred EE
Confidence 53
No 473
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=21.06 E-value=59 Score=24.24 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.5
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFPG 410 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~~ 410 (531)
++..+++++|.++|++++-.+ +..||.|
T Consensus 5 ~~~~~t~~~va~LA~RLE~Dd---Y~~pF~~ 32 (57)
T PF10742_consen 5 DLAAFTEEDVAKLAKRLEEDD---YPNPFDG 32 (57)
T ss_pred hHhhcCHHHHHHHHHhhhhcc---CCchhhh
Confidence 456689999999999999886 7778875
No 474
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.99 E-value=2e+02 Score=28.05 Aligned_cols=68 Identities=7% Similarity=0.056 Sum_probs=40.6
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|+...|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+.. . ......++.+.++
T Consensus 8 ~~~~~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~-----~---~~~~~~i~~~~~~ 79 (272)
T cd06313 8 GLQATWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLG-----I---GTLTEAVQKAIAR 79 (272)
T ss_pred ccCChHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-----h---HHhHHHHHHHHHC
Confidence 44444533 355667779999888755433221 225679999996431 1 1123455666777
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|+.-+
T Consensus 80 ~iPvV~~ 86 (272)
T cd06313 80 GIPVIDM 86 (272)
T ss_pred CCcEEEe
Confidence 9999754
No 475
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=20.92 E-value=89 Score=29.55 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=33.8
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHH----hC-CcEEEEEEeCCCCCh
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKA----IG-DRLHCVFVDNGLLRY 264 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~----~g-~~v~~v~id~g~~~~ 264 (531)
.+.+++.+...+++.+++|||--...+...+.+. +. .+++-..+|--..+.
T Consensus 10 ~~~i~~~i~~~~~~~i~LsgGstp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~ 65 (199)
T PF01182_consen 10 AEAIEEAIAERGRAVIALSGGSTPKPLYQELAKLHKERIDWSRVHFFNVDERVVPP 65 (199)
T ss_dssp HHHHHHHHHHCSSEEEEE--SCTHHHHHHHHHHHHHTCSCGGGEEEEESEEESSTT
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhhhccccCChhHeEEEeCcccccCC
Confidence 3445555554678999999998888777777664 34 578888888655443
No 476
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=20.90 E-value=3.8e+02 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.1
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSG 37 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~ 37 (531)
|++|||++ +++....+++.++++|.++.++..
T Consensus 2 ~k~iLi~g-~g~~a~~i~~aa~~~G~~vv~~~~ 33 (451)
T PRK08591 2 FDKILIAN-RGEIALRIIRACKELGIKTVAVHS 33 (451)
T ss_pred cceEEEEC-CCHHHHHHHHHHHHcCCeEEEEcC
Confidence 67899995 556778899999999999887643
No 477
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=1.4e+02 Score=29.79 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHhCCcEEEEEEe------CCCCChhHHHHHHHHHHHhCCCcEEEE
Q 039743 235 VDSTVAATLVHKAIGDRLHCVFVD------NGLLRYKERERVMDTFEKDLHLPVTCV 285 (531)
Q Consensus 235 vDS~v~a~l~~k~~g~~v~~v~id------~g~~~~~e~~~~~~~la~~lgi~~~vv 285 (531)
.||++++.+..+ +|.|+.+- +|-....--..-...+|+++|||+.+.
T Consensus 221 tDS~vA~~m~~~----~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyva 273 (354)
T KOG1468|consen 221 TDSMVAAAMKNH----QVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVA 273 (354)
T ss_pred hhHHHHHHHhcC----CCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEe
Confidence 499988766543 55566652 332211100111244799999999876
No 478
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=20.64 E-value=1.9e+02 Score=28.46 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=31.8
Q ss_pred ccceeeccCCCCCHHHHHHHHHHH-----hC-CcEEEEEEeCCC-CChhH
Q 039743 224 EDHVICALSGGVDSTVAATLVHKA-----IG-DRLHCVFVDNGL-LRYKE 266 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~-----~g-~~v~~v~id~g~-~~~~e 266 (531)
.+++.+++|||-...-+...+.+. +. .+++...+|--. .+.+.
T Consensus 32 ~~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~~vp~~~ 81 (259)
T TIGR00502 32 ARPFVLGLPTGGTPIGTYKQLIELHQAGKISFQNVTTFNMDEYAGLSEEH 81 (259)
T ss_pred cCceEEEEcCCCChHHHHHHHHHHhhccCCchhHeEEEeCeecCCCCCCc
Confidence 567999999999888877777653 33 578888888764 54443
No 479
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=20.64 E-value=3.9e+02 Score=28.27 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=47.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC--hhc----cc---------------cCCCCEEEEcCCCCCCCCCC
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS--LDD----IT---------------AKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~--~~~----~~---------------~~~~dgiIlsGGp~s~~~~~ 65 (531)
+|+|+-.|..-. .+++.|.+.|..+........ ... +. ..++|-||.|.|-.
T Consensus 1 ~~~~iG~G~~G~-a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~------ 73 (433)
T TIGR01087 1 KILILGLGKTGR-AVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIP------ 73 (433)
T ss_pred CEEEEEeCHhHH-HHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCC------
Confidence 478888887666 899999999998877653221 110 00 01234444443321
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
. ....+..+.++++||++= .++++..+
T Consensus 74 --~-~~p~~~~a~~~~i~i~~~---~e~~~~~~ 100 (433)
T TIGR01087 74 --P-DHPLVQAAAKRGIPVVGD---IELFLRLV 100 (433)
T ss_pred --C-CCHHHHHHHHCCCcEEEH---HHHHHhhc
Confidence 1 123456677889999753 67777665
No 480
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=20.60 E-value=5.7e+02 Score=24.16 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=29.7
Q ss_pred eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCC
Q 039743 12 DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGG 57 (531)
Q Consensus 12 D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGG 57 (531)
|+...|.. .+.+++++.|..+.+.+...+.+. +...++||+|+.+.
T Consensus 8 ~~~~~~~~~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 8 YINHPYFSQLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 55555543 455677778999988776543321 22557899999754
No 481
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.47 E-value=5.1e+02 Score=21.83 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=39.7
Q ss_pred EEEEeCCCCc--HHHHHHHHHH-CCCEEEEEeCCCChhccccCCCCEEE-EcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 8 VLILDYGSQY--THLITRRIRS-LSILSLCLSGTCSLDDITAKNPRVVI-LSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 8 I~IlD~G~~~--~~~i~r~l~~-~G~~~~v~~~~~~~~~~~~~~~dgiI-lsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
|.++-.|+++ .+.+.+.++. .|..+...+..... . ...+-|.+| +|-+..+ .-..+.++.+.+++.|
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~dl~I~iS~SG~t-------~e~i~~~~~a~~~g~~ 72 (119)
T cd05017 2 IVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLP-A-FVDRKTLVIAVSYSGNT-------EETLSAVEQAKERGAK 72 (119)
T ss_pred EEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccCc-C-CCCCCCEEEEEECCCCC-------HHHHHHHHHHHHCCCE
Confidence 6677777665 2344566666 37766655432111 1 112224444 4433221 1124567788889999
Q ss_pred EEEeeH
Q 039743 84 VLGICY 89 (531)
Q Consensus 84 vLGIC~ 89 (531)
+++|+-
T Consensus 73 iI~IT~ 78 (119)
T cd05017 73 IVAITS 78 (119)
T ss_pred EEEEeC
Confidence 999994
No 482
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.35 E-value=2.2e+02 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.9
Q ss_pred cceeeccCCCCCHHHHHHHHHHHh
Q 039743 225 DHVICALSGGVDSTVAATLVHKAI 248 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~ 248 (531)
++++++.++|+=|++++.-+.+++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~ 25 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYL 25 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHH
Confidence 479999999998887777776654
No 483
>PRK13054 lipid kinase; Reviewed
Probab=20.32 E-value=2.6e+02 Score=28.07 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=34.7
Q ss_pred CCEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCC--Chhcc----ccCCCCEEEEcCCCCCC
Q 039743 5 PELVLILDYGSQY----THLITRRIRSLSILSLCLSGTC--SLDDI----TAKNPRVVILSGGPHSV 61 (531)
Q Consensus 5 ~~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~--~~~~~----~~~~~dgiIlsGGp~s~ 61 (531)
|++++++-.|.+- ...+.+.+++.|..+++..... +..++ ...++|.||+.||-+++
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHH
Confidence 4566665444432 3345677888998877655432 22222 13568999999997653
No 484
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.29 E-value=3.3e+02 Score=26.80 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=32.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~ 59 (531)
|++|+|+- |.+-...+++.|.+.|..+.+.-.+. ... .....+-+..|+.+
T Consensus 2 ~~~Ilvlg-GT~egr~la~~L~~~g~~v~~Svat~-~g~--~~~~~~~v~~G~l~ 52 (248)
T PRK08057 2 MPRILLLG-GTSEARALARALAAAGVDIVLSLAGR-TGG--PADLPGPVRVGGFG 52 (248)
T ss_pred CceEEEEe-chHHHHHHHHHHHhCCCeEEEEEccC-CCC--cccCCceEEECCCC
Confidence 46789883 66778889999999987655433222 111 22345667788873
No 485
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=20.02 E-value=4.5e+02 Score=25.03 Aligned_cols=46 Identities=2% Similarity=0.031 Sum_probs=28.2
Q ss_pred eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCC
Q 039743 12 DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGG 57 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGG 57 (531)
++.+.|... +.+.+++.|..+.+.+.+.+.+. +...++||+|+.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 8 TISNPFFSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred CCCChhHHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445555444 44667778988887755433221 22457999999764
No 486
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.01 E-value=2.7e+02 Score=21.54 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=38.7
Q ss_pred EEEeCCCCc--HHHHHHHHHHC-CCEEEEEeCCCCh-hc-ccc-CCCCEEE-EcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 9 LILDYGSQY--THLITRRIRSL-SILSLCLSGTCSL-DD-ITA-KNPRVVI-LSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 9 ~IlD~G~~~--~~~i~r~l~~~-G~~~~v~~~~~~~-~~-~~~-~~~dgiI-lsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.++-.|+++ ...+...+.+. |..+...+..... .+ +.. .+=|.+| +|-++.+ .-...+++.+.++|
T Consensus 2 ~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t-------~~~~~~~~~a~~~g 74 (87)
T cd04795 2 FVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT-------EELLAALEIAKELG 74 (87)
T ss_pred EEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCC-------HHHHHHHHHHHHcC
Confidence 455566544 23344556666 8777765433211 11 111 2224343 3332221 11346778888899
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
.|+++|+
T Consensus 75 ~~ii~it 81 (87)
T cd04795 75 IPVIAIT 81 (87)
T ss_pred CeEEEEe
Confidence 9999999
Done!