Query 039743
Match_columns 531
No_of_seqs 510 out of 4239
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:18:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uow_A GMP synthetase; structu 100.0 2E-135 5E-140 1106.8 45.6 517 5-531 7-556 (556)
2 3tqi_A GMP synthase [glutamine 100.0 2E-132 7E-137 1078.5 38.0 511 6-531 11-527 (527)
3 1gpm_A GMP synthetase, XMP ami 100.0 6E-128 2E-132 1044.3 41.9 508 6-531 8-525 (525)
4 2ywb_A GMP synthase [glutamine 100.0 2E-126 6E-131 1028.3 41.2 502 7-531 1-503 (503)
5 2vxo_A GMP synthase [glutamine 100.0 6E-116 2E-120 970.5 33.5 505 6-531 30-697 (697)
6 2dpl_A GMP synthetase, GMP syn 100.0 2.5E-78 8.5E-83 613.7 27.2 308 204-531 1-308 (308)
7 2vpi_A GMP synthase; guanine m 100.0 5.4E-41 1.8E-45 323.7 17.2 194 6-206 25-218 (218)
8 2a9v_A GMP synthase; structura 100.0 4.7E-39 1.6E-43 309.1 13.7 198 4-209 12-210 (212)
9 1qdl_B Protein (anthranilate s 100.0 7.9E-37 2.7E-41 289.9 19.3 186 6-194 2-192 (195)
10 1wl8_A GMP synthase [glutamine 100.0 2.1E-36 7.2E-41 285.5 20.3 186 7-199 2-187 (189)
11 1i1q_B Anthranilate synthase c 100.0 1.6E-35 5.4E-40 280.2 19.4 185 6-198 1-189 (192)
12 3fij_A LIN1909 protein; 11172J 100.0 1.3E-32 4.5E-37 271.4 17.9 179 18-200 30-242 (254)
13 3r75_A Anthranilate/para-amino 100.0 4.2E-32 1.4E-36 298.1 15.3 185 6-198 447-633 (645)
14 4gud_A Imidazole glycerol phos 100.0 1.4E-33 4.9E-38 270.7 2.7 182 6-201 3-207 (211)
15 3m3p_A Glutamine amido transfe 100.0 3E-31 1E-35 260.0 16.3 182 6-194 4-192 (250)
16 1a9x_B Carbamoyl phosphate syn 100.0 1.3E-30 4.6E-35 268.4 18.0 179 6-198 191-373 (379)
17 3l7n_A Putative uncharacterize 100.0 1.8E-30 6.1E-35 253.4 15.8 184 7-201 2-197 (236)
18 1o1y_A Conserved hypothetical 100.0 6.6E-30 2.2E-34 249.8 16.2 177 7-194 14-197 (239)
19 3d54_D Phosphoribosylformylgly 100.0 5.8E-29 2E-33 238.7 19.0 189 5-199 2-212 (213)
20 2ywj_A Glutamine amidotransfer 100.0 2.1E-29 7E-34 237.0 8.2 172 6-199 1-184 (186)
21 1gpw_B Amidotransferase HISH; 100.0 5.9E-29 2E-33 236.8 8.5 173 6-200 1-199 (201)
22 2v4u_A CTP synthase 2; pyrimid 100.0 3.1E-29 1.1E-33 251.4 5.7 191 6-202 26-279 (289)
23 1l9x_A Gamma-glutamyl hydrolas 99.9 7.7E-29 2.6E-33 251.5 6.2 196 6-202 31-280 (315)
24 1ka9_H Imidazole glycerol phos 99.9 1.4E-27 4.9E-32 227.0 12.6 176 6-198 3-200 (200)
25 2nv0_A Glutamine amidotransfer 99.9 3.7E-27 1.3E-31 223.4 11.4 175 5-198 1-187 (196)
26 2w7t_A CTP synthetase, putativ 99.9 4.1E-27 1.4E-31 234.2 8.4 187 6-199 9-255 (273)
27 1q7r_A Predicted amidotransfer 99.9 2.3E-26 7.9E-31 221.8 7.5 175 6-199 24-210 (219)
28 1jvn_A Glutamine, bifunctional 99.9 4.8E-26 1.6E-30 247.6 8.0 181 5-195 4-213 (555)
29 2iss_D Glutamine amidotransfer 99.9 3E-25 1E-29 212.3 11.9 173 6-198 21-207 (208)
30 2ywd_A Glutamine amidotransfer 99.9 4.9E-25 1.7E-29 207.7 8.0 174 6-199 3-190 (191)
31 2abw_A PDX2 protein, glutamina 99.9 3.2E-25 1.1E-29 214.9 6.3 179 6-198 4-213 (227)
32 3p52_A NH(3)-dependent NAD(+) 99.9 1.7E-24 5.8E-29 212.0 7.5 201 206-439 6-210 (249)
33 1vco_A CTP synthetase; tetrame 99.9 1.3E-24 4.4E-29 232.8 6.0 184 8-198 310-543 (550)
34 3fiu_A NH(3)-dependent NAD(+) 99.9 3.5E-24 1.2E-28 209.9 8.0 203 202-438 5-218 (249)
35 1wxi_A NH(3)-dependent NAD(+) 99.9 2.1E-23 7.2E-28 207.2 9.4 209 196-437 9-238 (275)
36 2h2w_A Homoserine O-succinyltr 99.9 1.9E-22 6.4E-27 201.9 14.1 175 6-183 48-252 (312)
37 3q4g_A NH(3)-dependent NAD(+) 99.9 2.5E-23 8.5E-28 206.1 7.6 210 195-437 9-247 (279)
38 1s1m_A CTP synthase; CTP synth 99.9 1.5E-23 5.1E-28 224.3 6.1 174 19-198 306-536 (545)
39 3nva_A CTP synthase; rossman f 99.9 3.5E-23 1.2E-27 217.7 7.6 186 7-199 295-533 (535)
40 2vdj_A Homoserine O-succinyltr 99.9 3.9E-22 1.3E-26 199.2 14.7 175 6-183 36-241 (301)
41 1kqp_A NAD+ synthase, NH(3)-de 99.9 7.6E-23 2.6E-27 203.1 8.9 210 196-437 8-235 (271)
42 2e18_A NH(3)-dependent NAD(+) 99.9 1.4E-22 4.8E-27 200.0 10.6 199 205-440 5-207 (257)
43 2c5s_A THII, probable thiamine 99.9 1.3E-22 4.3E-27 213.3 10.4 186 222-437 185-379 (413)
44 1xng_A NH(3)-dependent NAD(+) 99.8 1.2E-21 4.1E-26 194.5 8.5 200 206-439 5-209 (268)
45 3dpi_A NAD+ synthetase; ssgcid 99.8 7.2E-22 2.5E-26 195.6 2.9 211 195-437 15-247 (285)
46 3n05_A NH(3)-dependent NAD(+) 99.8 2.7E-21 9.2E-26 212.3 6.6 201 207-441 307-522 (590)
47 3bl5_A Queuosine biosynthesis 99.8 1.6E-19 5.3E-24 173.5 11.0 170 224-407 3-184 (219)
48 2hma_A Probable tRNA (5-methyl 99.8 7E-19 2.4E-23 182.3 13.1 172 224-413 9-204 (376)
49 3a2k_A TRNA(Ile)-lysidine synt 99.8 5.3E-19 1.8E-23 188.6 12.3 166 221-409 15-192 (464)
50 2der_A TRNA-specific 2-thiouri 99.8 1E-18 3.4E-23 181.1 12.0 171 224-413 17-212 (380)
51 1wy5_A TILS, hypothetical UPF0 99.8 7.7E-19 2.6E-23 178.5 10.4 171 209-400 7-188 (317)
52 3k32_A Uncharacterized protein 99.8 2.3E-19 7.9E-24 170.6 4.8 146 224-399 6-155 (203)
53 2pg3_A Queuosine biosynthesis 99.7 6.2E-18 2.1E-22 164.1 11.0 161 224-399 2-180 (232)
54 1ni5_A Putative cell cycle pro 99.7 4.7E-18 1.6E-22 179.6 10.2 164 217-409 6-181 (433)
55 1k92_A Argininosuccinate synth 99.7 1E-17 3.5E-22 175.4 9.8 165 219-409 5-191 (455)
56 3ilv_A Glutamine-dependent NAD 99.7 6.4E-18 2.2E-22 186.5 8.0 198 211-439 288-544 (634)
57 1sur_A PAPS reductase; assimil 99.7 4.7E-17 1.6E-21 156.0 12.9 160 225-410 45-210 (215)
58 3sdb_A Glutamine-dependent NAD 99.7 2.9E-18 9.9E-23 190.3 4.2 196 215-443 350-578 (680)
59 1vl2_A Argininosuccinate synth 99.7 1.1E-16 3.8E-21 165.8 10.9 158 225-409 15-190 (421)
60 1kor_A Argininosuccinate synth 99.7 2.7E-16 9.2E-21 163.7 12.2 155 225-407 1-171 (400)
61 2nz2_A Argininosuccinate synth 99.6 1.1E-15 3.7E-20 159.5 8.6 148 224-400 5-172 (413)
62 2o8v_A Phosphoadenosine phosph 99.6 1.1E-14 3.9E-19 142.8 14.6 159 225-409 46-210 (252)
63 4f4h_A Glutamine dependent NAD 99.6 4E-15 1.4E-19 162.0 8.4 194 212-439 286-499 (565)
64 1zun_A Sulfate adenylyltransfe 99.5 3E-14 1E-18 144.6 12.6 177 210-404 32-228 (325)
65 3ugj_A Phosphoribosylformylgly 99.5 5.9E-14 2E-18 163.5 16.4 174 6-182 1048-1273(1303)
66 2oq2_A Phosphoadenosine phosph 99.5 8.3E-14 2.9E-18 137.3 11.2 162 225-409 42-215 (261)
67 1vbk_A Hypothetical protein PH 99.5 1.4E-14 4.8E-19 145.9 5.6 123 222-398 177-307 (307)
68 2goy_A Adenosine phosphosulfat 99.3 7E-12 2.4E-16 124.5 11.4 165 225-409 55-224 (275)
69 2wsi_A FAD synthetase; transfe 99.2 1.2E-10 4.3E-15 117.1 14.3 148 225-409 54-222 (306)
70 3rjz_A N-type ATP pyrophosphat 98.5 1.3E-07 4.3E-12 91.0 8.1 155 225-426 5-166 (237)
71 1fy2_A Aspartyl dipeptidase; s 98.5 1.3E-08 4.4E-13 98.1 0.4 90 6-98 32-130 (229)
72 3fwk_A FMN adenylyltransferase 98.5 2.6E-06 9E-11 84.4 15.2 146 225-409 59-225 (308)
73 3l4e_A Uncharacterized peptida 98.3 1.5E-07 5.1E-12 89.0 2.9 91 6-96 28-128 (206)
74 1ct9_A Asparagine synthetase B 98.3 3.7E-07 1.3E-11 99.0 6.3 124 211-344 213-354 (553)
75 1jgt_A Beta-lactam synthetase; 98.3 3.1E-07 1.1E-11 98.7 3.5 72 215-290 232-303 (513)
76 1q15_A CARA; CMPR, (2S,5S)-5-c 98.2 6.1E-07 2.1E-11 96.3 2.9 73 214-290 228-300 (503)
77 1oi4_A Hypothetical protein YH 98.0 9.7E-06 3.3E-10 75.6 7.0 92 5-97 23-134 (193)
78 4hcj_A THIJ/PFPI domain protei 97.9 1.5E-05 5.3E-10 73.3 6.2 95 1-97 4-117 (177)
79 3l18_A Intracellular protease 97.3 0.00017 5.8E-09 65.3 5.1 91 6-97 3-111 (168)
80 2fex_A Conserved hypothetical 97.3 0.00072 2.5E-08 62.4 9.3 91 5-97 1-110 (188)
81 4e08_A DJ-1 beta; flavodoxin-l 97.3 0.00011 3.8E-09 68.1 3.7 93 5-97 5-116 (190)
82 3l3b_A ES1 family protein; ssg 97.3 0.00057 2E-08 65.9 8.7 93 6-98 24-168 (242)
83 3f5d_A Protein YDEA; unknow pr 97.3 0.0007 2.4E-08 63.7 9.0 89 5-97 3-109 (206)
84 1vhq_A Enhancing lycopene bios 97.3 0.0003 1E-08 67.4 6.5 95 5-99 6-151 (232)
85 2rk3_A Protein DJ-1; parkinson 97.3 0.00013 4.3E-09 68.1 3.7 93 5-97 3-115 (197)
86 2vrn_A Protease I, DR1199; cys 97.3 0.00032 1.1E-08 64.8 6.3 93 5-97 9-124 (190)
87 1u9c_A APC35852; structural ge 97.2 0.00033 1.1E-08 66.6 6.2 95 3-97 2-138 (224)
88 3ot1_A 4-methyl-5(B-hydroxyeth 97.2 0.00015 5.2E-09 68.3 3.5 97 1-97 4-121 (208)
89 3efe_A THIJ/PFPI family protei 97.2 0.0011 3.7E-08 62.6 8.7 93 3-97 3-121 (212)
90 2ab0_A YAJL; DJ-1/THIJ superfa 97.1 0.00026 8.8E-09 66.5 4.2 92 6-97 3-116 (205)
91 3n7t_A Macrophage binding prot 97.1 0.00028 9.6E-09 68.3 4.2 51 47-97 104-154 (247)
92 3gra_A Transcriptional regulat 97.1 0.002 6.8E-08 60.3 9.8 94 1-97 1-117 (202)
93 3ej6_A Catalase-3; heme, hydro 96.9 0.0041 1.4E-07 67.9 11.4 91 6-97 538-646 (688)
94 1rw7_A YDR533CP; alpha-beta sa 96.8 0.00054 1.8E-08 66.1 3.6 51 47-97 97-147 (243)
95 3er6_A Putative transcriptiona 96.7 0.0017 5.9E-08 61.0 5.9 95 1-97 4-124 (209)
96 3cne_A Putative protease I; st 96.6 0.0048 1.6E-07 56.0 7.9 71 27-97 27-120 (175)
97 3kkl_A Probable chaperone prot 96.6 0.0015 5E-08 63.1 4.4 51 47-97 97-147 (244)
98 3ttv_A Catalase HPII; heme ori 96.4 0.0024 8.2E-08 70.1 4.9 89 6-97 601-708 (753)
99 3uk7_A Class I glutamine amido 96.3 0.0059 2E-07 63.1 7.5 90 6-97 13-137 (396)
100 3uk7_A Class I glutamine amido 96.2 0.0063 2.1E-07 62.9 7.0 92 4-97 204-330 (396)
101 3fse_A Two-domain protein cont 96.2 0.0043 1.5E-07 63.3 5.2 93 4-97 9-121 (365)
102 2iuf_A Catalase; oxidoreductas 96.0 0.012 4.1E-07 64.4 8.2 92 6-97 530-648 (688)
103 3ewn_A THIJ/PFPI family protei 95.4 0.013 4.3E-07 56.8 5.0 90 6-97 24-133 (253)
104 1sy7_A Catalase 1; heme oxidat 95.4 0.013 4.5E-07 64.7 5.4 94 6-99 535-646 (715)
105 2vxo_A GMP synthase [glutamine 95.3 0.014 4.8E-07 64.6 5.2 40 421-461 584-623 (697)
106 3mgk_A Intracellular protease/ 94.8 0.012 4E-07 55.3 2.5 93 1-97 1-113 (211)
107 3noq_A THIJ/PFPI family protei 94.7 0.022 7.6E-07 54.2 4.3 89 6-97 6-113 (231)
108 4gdh_A DJ-1, uncharacterized p 93.6 0.044 1.5E-06 50.6 3.8 90 4-94 3-120 (194)
109 1n57_A Chaperone HSP31, protei 92.4 0.026 8.9E-07 55.8 0.3 51 47-97 144-194 (291)
110 3ff4_A Uncharacterized protein 91.9 0.61 2.1E-05 39.5 8.3 89 3-93 2-117 (122)
111 3bhn_A THIJ/PFPI domain protei 91.3 0.047 1.6E-06 52.1 0.7 87 4-97 19-128 (236)
112 3en0_A Cyanophycinase; serine 89.8 0.09 3.1E-06 51.8 1.2 91 6-96 57-160 (291)
113 1t0b_A THUA-like protein; treh 89.2 7.1 0.00024 37.2 14.1 169 20-194 36-221 (252)
114 2ark_A Flavodoxin; FMN, struct 86.9 0.64 2.2E-05 42.1 5.0 70 2-77 1-78 (188)
115 4e5v_A Putative THUA-like prot 86.3 18 0.0006 35.0 15.2 147 5-158 4-195 (281)
116 3rht_A (gatase1)-like protein; 84.7 1.3 4.6E-05 42.6 6.1 81 2-87 1-85 (259)
117 2an1_A Putative kinase; struct 83.4 0.83 2.8E-05 44.6 4.2 80 1-90 1-96 (292)
118 2a5l_A Trp repressor binding p 82.7 2 6.9E-05 38.8 6.3 35 4-39 4-44 (200)
119 3eag_A UDP-N-acetylmuramate:L- 80.3 8.7 0.0003 37.9 10.4 84 2-97 1-103 (326)
120 3l49_A ABC sugar (ribose) tran 78.3 5 0.00017 38.1 7.8 79 1-87 1-92 (291)
121 1u0t_A Inorganic polyphosphate 75.8 1.9 6.4E-05 42.5 3.9 77 5-90 4-108 (307)
122 2r47_A Uncharacterized protein 75.6 0.99 3.4E-05 39.6 1.5 81 6-89 27-125 (157)
123 3cs3_A Sugar-binding transcrip 73.4 19 0.00066 33.7 10.5 72 6-87 9-86 (277)
124 3tb6_A Arabinose metabolism tr 71.7 26 0.00088 32.9 11.0 77 6-87 16-105 (298)
125 3g1w_A Sugar ABC transporter; 71.6 13 0.00044 35.4 8.8 78 1-87 1-92 (305)
126 3kbq_A Protein TA0487; structu 69.0 11 0.00036 33.8 6.8 88 6-99 4-107 (172)
127 1iuk_A Hypothetical protein TT 69.0 25 0.00087 29.9 9.2 89 5-96 13-133 (140)
128 3f6r_A Flavodoxin; FMN binding 68.8 7.6 0.00026 33.1 5.8 48 5-55 1-56 (148)
129 2zki_A 199AA long hypothetical 68.2 5.6 0.00019 35.8 5.0 34 5-38 4-41 (199)
130 2fz5_A Flavodoxin; alpha/beta 68.0 15 0.00053 30.4 7.5 73 8-86 2-85 (137)
131 3rfq_A Pterin-4-alpha-carbinol 66.9 9.5 0.00033 34.5 6.2 54 6-59 31-100 (185)
132 4hv4_A UDP-N-acetylmuramate--L 66.5 24 0.00081 37.0 10.1 84 4-99 21-120 (494)
133 3l6u_A ABC-type sugar transpor 66.2 28 0.00094 32.7 9.8 74 6-87 9-95 (293)
134 3m9w_A D-xylose-binding peripl 65.8 30 0.001 33.0 10.1 74 6-87 3-89 (313)
135 2lpm_A Two-component response 64.3 4.5 0.00015 34.0 3.2 80 1-87 4-85 (123)
136 3jy6_A Transcriptional regulat 64.1 31 0.001 32.2 9.6 71 6-87 8-91 (276)
137 3hly_A Flavodoxin-like domain; 63.7 9.7 0.00033 33.3 5.5 51 7-59 2-61 (161)
138 2fep_A Catabolite control prot 63.3 34 0.0012 32.2 9.9 73 6-88 17-102 (289)
139 1uwd_A Hypothetical protein TM 63.3 15 0.00051 29.6 6.2 60 460-530 33-92 (103)
140 2hna_A Protein MIOC, flavodoxi 62.7 17 0.00057 30.9 6.8 80 6-92 2-93 (147)
141 2pbq_A Molybdenum cofactor bio 62.3 9 0.00031 34.4 5.1 59 1-59 1-79 (178)
142 3tnj_A Universal stress protei 62.2 21 0.00073 29.9 7.4 36 224-259 6-44 (150)
143 3bbl_A Regulatory protein of L 61.7 29 0.00098 32.7 9.0 73 6-88 5-94 (287)
144 3k4h_A Putative transcriptiona 60.5 26 0.00089 32.9 8.4 72 6-87 9-98 (292)
145 2rdm_A Response regulator rece 60.5 7.3 0.00025 31.7 3.9 82 1-88 1-86 (132)
146 3kht_A Response regulator; PSI 60.0 7.7 0.00026 32.3 4.0 82 1-89 1-89 (144)
147 3o74_A Fructose transport syst 58.6 36 0.0012 31.4 9.0 73 6-87 3-88 (272)
148 2fn9_A Ribose ABC transporter, 58.1 42 0.0015 31.4 9.5 75 6-88 3-90 (290)
149 3uug_A Multiple sugar-binding 57.7 40 0.0014 32.3 9.4 74 6-87 4-90 (330)
150 1z0s_A Probable inorganic poly 57.1 8.1 0.00028 37.4 4.0 68 7-90 31-100 (278)
151 3rot_A ABC sugar transporter, 55.4 24 0.00083 33.4 7.2 74 6-87 4-92 (297)
152 3ksm_A ABC-type sugar transpor 55.1 34 0.0012 31.6 8.2 74 7-88 2-91 (276)
153 3b6i_A Flavoprotein WRBA; flav 54.6 23 0.0008 31.4 6.6 33 5-38 1-40 (198)
154 1jmv_A USPA, universal stress 54.6 50 0.0017 27.1 8.3 34 225-258 3-39 (141)
155 3egc_A Putative ribose operon 54.6 30 0.001 32.5 7.7 72 6-87 9-93 (291)
156 5nul_A Flavodoxin; electron tr 54.5 21 0.00072 29.8 5.9 67 16-87 10-85 (138)
157 2rgy_A Transcriptional regulat 54.2 45 0.0015 31.3 9.0 73 6-88 9-97 (290)
158 1rtt_A Conserved hypothetical 53.9 11 0.00036 33.9 4.1 69 6-77 7-98 (193)
159 3gt7_A Sensor protein; structu 53.9 8.5 0.00029 32.7 3.3 79 3-88 5-88 (154)
160 3kjx_A Transcriptional regulat 53.8 56 0.0019 31.6 9.8 72 6-87 69-153 (344)
161 3c3k_A Alanine racemase; struc 53.4 60 0.0021 30.3 9.7 71 6-87 9-92 (285)
162 3dbi_A Sugar-binding transcrip 52.5 70 0.0024 30.8 10.3 73 6-87 62-149 (338)
163 3kke_A LACI family transcripti 52.4 45 0.0015 31.6 8.6 73 6-88 16-101 (303)
164 3fni_A Putative diflavin flavo 52.4 18 0.00063 31.4 5.3 51 6-58 5-65 (159)
165 3brs_A Periplasmic binding pro 51.3 26 0.0009 32.8 6.7 79 1-87 1-96 (289)
166 3h5i_A Response regulator/sens 51.1 11 0.00037 31.2 3.5 55 1-55 1-57 (140)
167 3pfn_A NAD kinase; structural 50.9 37 0.0013 34.1 7.8 76 5-90 38-141 (365)
168 1sqs_A Conserved hypothetical 50.6 17 0.00057 34.0 5.0 33 5-37 1-41 (242)
169 3cq1_A Putative uncharacterize 50.4 33 0.0011 27.5 6.1 59 460-530 33-91 (103)
170 3d8u_A PURR transcriptional re 50.3 36 0.0012 31.5 7.4 72 6-87 4-88 (275)
171 2pjk_A 178AA long hypothetical 50.2 35 0.0012 30.4 6.9 55 6-60 16-93 (178)
172 2o20_A Catabolite control prot 50.0 67 0.0023 30.9 9.6 72 6-87 64-148 (332)
173 3e3m_A Transcriptional regulat 49.7 60 0.0021 31.6 9.3 72 6-87 71-155 (355)
174 2duw_A Putative COA-binding pr 49.6 63 0.0022 27.5 8.2 29 5-33 13-44 (145)
175 3brq_A HTH-type transcriptiona 49.5 70 0.0024 29.7 9.5 72 6-87 20-107 (296)
176 2dri_A D-ribose-binding protei 49.1 58 0.002 30.1 8.7 73 7-87 3-88 (271)
177 3iwt_A 178AA long hypothetical 49.1 34 0.0012 30.2 6.6 45 16-60 40-93 (178)
178 2rjo_A Twin-arginine transloca 49.1 30 0.001 33.4 6.9 79 1-87 1-94 (332)
179 3huu_A Transcription regulator 47.9 31 0.0011 32.8 6.6 72 6-87 23-112 (305)
180 3e61_A Putative transcriptiona 47.9 43 0.0015 31.1 7.6 70 6-87 9-92 (277)
181 3h5o_A Transcriptional regulat 47.9 51 0.0017 31.9 8.3 72 6-87 63-147 (339)
182 3o1i_D Periplasmic protein TOR 47.6 39 0.0013 31.8 7.3 74 5-87 5-93 (304)
183 2is8_A Molybdopterin biosynthe 47.5 15 0.0005 32.4 3.8 54 6-59 2-73 (164)
184 3lk7_A UDP-N-acetylmuramoylala 47.2 63 0.0022 33.1 9.3 83 6-101 10-113 (451)
185 2iks_A DNA-binding transcripti 47.1 52 0.0018 30.9 8.1 73 6-87 21-106 (293)
186 1tjy_A Sugar transport protein 46.8 61 0.0021 31.0 8.7 74 6-87 4-91 (316)
187 3h75_A Periplasmic sugar-bindi 46.7 46 0.0016 32.3 7.8 74 6-88 4-93 (350)
188 3gv0_A Transcriptional regulat 46.3 51 0.0018 30.9 7.9 72 6-87 9-95 (288)
189 3nbm_A PTS system, lactose-spe 46.1 35 0.0012 27.8 5.7 74 5-88 6-85 (108)
190 1ydg_A Trp repressor binding p 45.8 28 0.00095 31.4 5.6 35 5-39 6-45 (211)
191 1ehs_A STB, heat-stable entero 45.8 2.8 9.6E-05 27.5 -0.9 16 84-99 32-47 (48)
192 2ioy_A Periplasmic sugar-bindi 45.8 83 0.0028 29.3 9.3 73 7-87 3-88 (283)
193 1y5e_A Molybdenum cofactor bio 45.4 37 0.0013 29.9 6.2 55 6-60 14-84 (169)
194 3clk_A Transcription regulator 45.1 49 0.0017 31.0 7.6 72 6-87 9-94 (290)
195 2qxy_A Response regulator; reg 44.4 13 0.00045 30.6 2.9 80 1-89 1-83 (142)
196 1bvy_F Protein (cytochrome P45 43.5 39 0.0013 30.4 6.1 67 6-78 22-94 (191)
197 2hsg_A Glucose-resistance amyl 43.5 67 0.0023 30.8 8.4 72 6-87 61-145 (332)
198 3fdx_A Putative filament prote 43.2 1.2E+02 0.0042 24.5 9.1 36 225-260 2-42 (143)
199 1ykg_A SIR-FP, sulfite reducta 43.1 13 0.00044 32.6 2.7 67 5-77 9-83 (167)
200 3hn7_A UDP-N-acetylmuramate-L- 42.8 90 0.0031 32.8 9.8 80 6-97 20-117 (524)
201 3cg4_A Response regulator rece 42.7 17 0.00058 29.8 3.4 78 4-88 6-88 (142)
202 8abp_A L-arabinose-binding pro 42.6 45 0.0016 31.4 6.9 72 7-87 4-88 (306)
203 1dbq_A Purine repressor; trans 42.6 85 0.0029 29.1 8.8 72 6-87 8-93 (289)
204 1y81_A Conserved hypothetical 42.4 67 0.0023 27.1 7.2 85 5-92 14-128 (138)
205 1mkz_A Molybdenum cofactor bio 42.3 45 0.0015 29.5 6.2 55 6-60 11-81 (172)
206 2fvy_A D-galactose-binding per 42.3 79 0.0027 29.6 8.6 75 6-88 3-91 (309)
207 2d59_A Hypothetical protein PH 42.0 1.4E+02 0.0047 25.2 9.2 86 5-93 22-137 (144)
208 1di6_A MOGA, molybdenum cofact 41.9 21 0.00071 32.5 4.0 55 5-59 3-77 (195)
209 3eod_A Protein HNR; response r 41.9 24 0.00083 28.4 4.2 77 6-89 8-87 (130)
210 3i42_A Response regulator rece 41.8 14 0.00049 29.7 2.7 77 5-88 3-84 (127)
211 2qv7_A Diacylglycerol kinase D 41.7 30 0.001 34.1 5.5 77 5-90 24-115 (337)
212 2q9u_A A-type flavoprotein; fl 41.4 49 0.0017 33.2 7.2 81 4-88 255-348 (414)
213 3bil_A Probable LACI-family tr 41.1 59 0.002 31.7 7.6 71 7-87 68-151 (348)
214 3pzy_A MOG; ssgcid, seattle st 40.9 30 0.001 30.4 4.8 52 5-59 7-77 (164)
215 3snk_A Response regulator CHEY 40.8 28 0.00095 28.3 4.4 50 6-55 15-66 (135)
216 3lua_A Response regulator rece 40.4 27 0.00092 28.6 4.3 79 1-88 1-88 (140)
217 2pln_A HP1043, response regula 39.8 62 0.0021 26.1 6.5 73 6-89 19-94 (137)
218 3hcw_A Maltose operon transcri 39.5 45 0.0016 31.4 6.3 72 6-87 8-97 (295)
219 3qk7_A Transcriptional regulat 39.4 90 0.0031 29.3 8.4 72 6-87 7-94 (294)
220 3loq_A Universal stress protei 39.2 1.6E+02 0.0056 27.5 10.3 88 224-339 170-260 (294)
221 3t8y_A CHEB, chemotaxis respon 39.0 21 0.00071 30.6 3.4 55 1-55 21-78 (164)
222 2gwr_A DNA-binding response re 38.8 29 0.00098 31.8 4.6 55 1-55 1-56 (238)
223 1qpz_A PURA, protein (purine n 38.8 1.4E+02 0.0049 28.5 10.0 72 6-87 59-144 (340)
224 2vzf_A NADH-dependent FMN redu 38.7 8.4 0.00029 34.8 0.8 33 5-37 2-42 (197)
225 3lno_A Putative uncharacterize 38.7 34 0.0012 27.8 4.5 62 459-530 34-95 (108)
226 4ici_A Putative flavoprotein; 38.2 31 0.001 30.4 4.4 29 4-32 12-42 (171)
227 3ouz_A Biotin carboxylase; str 37.9 24 0.00081 36.2 4.2 32 4-36 5-36 (446)
228 3grc_A Sensor protein, kinase; 37.7 24 0.00082 28.8 3.5 80 5-91 6-90 (140)
229 3gbv_A Putative LACI-family tr 37.5 61 0.0021 30.3 6.9 75 6-88 9-101 (304)
230 3edo_A Flavoprotein, putative 37.3 45 0.0015 28.4 5.3 27 5-31 3-32 (151)
231 2yq5_A D-isomer specific 2-hyd 37.3 1.3E+02 0.0044 29.8 9.3 74 5-87 1-76 (343)
232 2gk3_A Putative cytoplasmic pr 37.3 35 0.0012 32.3 4.9 68 19-88 43-125 (256)
233 2i2c_A Probable inorganic poly 37.0 26 0.00088 33.5 4.0 63 7-90 2-70 (272)
234 3sho_A Transcriptional regulat 36.7 52 0.0018 28.8 5.9 76 6-88 40-121 (187)
235 3lte_A Response regulator; str 36.5 23 0.00078 28.6 3.1 50 6-55 7-57 (132)
236 2h3h_A Sugar ABC transporter, 36.4 1.2E+02 0.0041 28.6 8.9 74 6-88 2-89 (313)
237 3dlo_A Universal stress protei 36.3 1.9E+02 0.0065 24.2 9.7 37 224-260 24-64 (155)
238 4fe7_A Xylose operon regulator 36.1 80 0.0027 31.6 7.8 70 6-87 26-103 (412)
239 3jte_A Response regulator rece 36.0 25 0.00086 28.8 3.4 78 5-89 3-85 (143)
240 3kto_A Response regulator rece 35.8 16 0.00054 30.0 2.0 76 5-88 6-87 (136)
241 2qr3_A Two-component system re 35.8 15 0.00052 30.0 1.9 83 5-89 3-88 (140)
242 3k9c_A Transcriptional regulat 35.7 86 0.0029 29.3 7.6 70 7-87 14-94 (289)
243 1f4p_A Flavodoxin; electron tr 35.3 42 0.0014 28.2 4.7 64 7-76 2-76 (147)
244 3hs3_A Ribose operon repressor 35.3 28 0.00095 32.6 3.9 51 6-56 11-75 (277)
245 1gud_A ALBP, D-allose-binding 35.1 1E+02 0.0034 28.8 8.0 73 7-87 3-90 (288)
246 3cz5_A Two-component response 34.6 17 0.00058 30.5 2.0 81 1-88 1-86 (153)
247 3hdv_A Response regulator; PSI 34.1 18 0.00061 29.5 2.0 79 4-89 6-89 (136)
248 4eg0_A D-alanine--D-alanine li 33.6 61 0.0021 31.2 6.2 76 6-88 14-98 (317)
249 4e7p_A Response regulator; DNA 33.1 38 0.0013 28.1 4.1 79 4-89 19-102 (150)
250 3a10_A Response regulator; pho 32.9 32 0.0011 26.8 3.4 51 5-55 1-52 (116)
251 2h0a_A TTHA0807, transcription 32.5 44 0.0015 31.0 4.8 67 12-88 8-85 (276)
252 1jx6_A LUXP protein; protein-l 32.1 1.3E+02 0.0046 28.6 8.5 73 6-87 44-134 (342)
253 3u9t_A MCC alpha, methylcroton 32.0 53 0.0018 35.9 5.9 34 5-39 28-61 (675)
254 3bch_A 40S ribosomal protein S 31.7 1.3E+02 0.0043 28.5 7.6 73 6-88 105-181 (253)
255 1vi6_A 30S ribosomal protein S 31.6 1.9E+02 0.0066 26.4 8.7 73 6-88 69-145 (208)
256 3mt0_A Uncharacterized protein 31.3 2.4E+02 0.0081 26.3 10.0 92 224-342 7-101 (290)
257 2bmv_A Flavodoxin; electron tr 31.2 43 0.0015 28.9 4.2 46 6-55 2-51 (164)
258 3hgm_A Universal stress protei 31.2 2.1E+02 0.007 23.2 8.6 35 225-259 3-40 (147)
259 1tvm_A PTS system, galactitol- 31.0 1.3E+02 0.0043 24.4 6.8 51 5-56 21-77 (113)
260 2rjn_A Response regulator rece 30.8 39 0.0013 28.1 3.8 79 5-90 7-88 (154)
261 3s3t_A Nucleotide-binding prot 30.7 1.8E+02 0.0063 23.5 8.2 36 224-259 5-43 (146)
262 2g2c_A Putative molybdenum cof 30.6 50 0.0017 28.9 4.5 54 6-59 6-80 (167)
263 2vk2_A YTFQ, ABC transporter p 30.6 2E+02 0.0068 26.9 9.4 74 6-87 3-89 (306)
264 1uuy_A CNX1, molybdopterin bio 30.3 1E+02 0.0035 26.8 6.6 59 1-59 1-82 (167)
265 3mt0_A Uncharacterized protein 30.1 1.2E+02 0.0041 28.4 7.6 37 224-260 134-180 (290)
266 1k66_A Phytochrome response re 30.0 28 0.00097 28.5 2.7 81 2-89 3-100 (149)
267 3eqz_A Response regulator; str 29.0 27 0.00093 28.1 2.4 76 5-88 3-81 (135)
268 3hv2_A Response regulator/HD d 28.4 36 0.0012 28.4 3.1 78 5-89 14-94 (153)
269 3u80_A 3-dehydroquinate dehydr 28.3 81 0.0028 27.3 5.2 58 3-60 2-82 (151)
270 3p9x_A Phosphoribosylglycinami 28.2 1.3E+02 0.0044 27.6 7.0 55 225-287 3-60 (211)
271 3cg0_A Response regulator rece 28.2 26 0.00088 28.5 2.1 79 5-89 9-90 (140)
272 3d7n_A Flavodoxin, WRBA-like p 28.1 21 0.00073 31.9 1.6 54 3-59 4-64 (193)
273 3c3m_A Response regulator rece 28.1 44 0.0015 27.2 3.6 77 5-88 3-84 (138)
274 3crn_A Response regulator rece 27.7 43 0.0015 27.0 3.4 76 5-88 3-82 (132)
275 3cnb_A DNA-binding response re 27.7 36 0.0012 27.7 2.9 77 5-88 8-91 (143)
276 2b4a_A BH3024; flavodoxin-like 27.5 52 0.0018 26.6 3.9 77 5-88 15-95 (138)
277 2ohh_A Type A flavoprotein FPR 27.1 89 0.003 31.0 6.3 79 6-88 257-350 (404)
278 2gkg_A Response regulator homo 26.9 29 0.00098 27.5 2.1 76 6-87 6-86 (127)
279 2jba_A Phosphate regulon trans 26.8 60 0.0021 25.6 4.1 75 6-88 3-83 (127)
280 3hr4_A Nitric oxide synthase, 26.4 2E+02 0.0069 26.4 8.0 91 6-102 41-156 (219)
281 2zay_A Response regulator rece 26.3 28 0.00097 28.6 2.0 78 5-89 8-90 (147)
282 2zkq_b 40S ribosomal protein S 26.2 1.5E+02 0.0053 28.6 7.4 73 6-88 72-148 (295)
283 2ioj_A Hypothetical protein AF 25.9 48 0.0016 27.9 3.4 69 19-96 42-113 (139)
284 3hdg_A Uncharacterized protein 25.8 26 0.00088 28.5 1.6 77 5-88 7-86 (137)
285 3u5c_A 40S ribosomal protein S 25.7 2.3E+02 0.0078 26.7 8.3 73 6-88 71-147 (252)
286 1g8l_A Molybdopterin biosynthe 25.5 82 0.0028 32.1 5.6 44 16-59 204-254 (411)
287 1jlj_A Gephyrin; globular alph 25.4 62 0.0021 29.1 4.2 55 5-59 14-89 (189)
288 3n0v_A Formyltetrahydrofolate 25.2 1.3E+02 0.0044 29.0 6.7 53 224-287 90-146 (286)
289 3nbm_A PTS system, lactose-spe 25.2 1.9E+02 0.0066 23.2 6.8 64 224-288 6-87 (108)
290 3gyb_A Transcriptional regulat 25.2 1.5E+02 0.0052 27.2 7.3 54 2-57 2-68 (280)
291 2z08_A Universal stress protei 25.1 2.6E+02 0.009 22.3 10.3 35 225-259 3-40 (137)
292 3nhm_A Response regulator; pro 24.9 38 0.0013 27.2 2.6 79 1-88 1-84 (133)
293 3oa2_A WBPB; oxidoreductase, s 24.9 2.5E+02 0.0086 26.9 9.0 31 4-34 2-32 (318)
294 3t6k_A Response regulator rece 24.5 57 0.0019 26.5 3.6 76 5-88 4-85 (136)
295 3h5t_A Transcriptional regulat 24.4 1.1E+02 0.0037 29.8 6.3 72 6-87 69-157 (366)
296 3o1l_A Formyltetrahydrofolate 24.3 1.3E+02 0.0044 29.2 6.6 53 224-287 105-161 (302)
297 1t5b_A Acyl carrier protein ph 24.3 1.4E+02 0.0047 26.1 6.4 33 5-37 1-43 (201)
298 2x7x_A Sensor protein; transfe 24.2 2.1E+02 0.0071 27.1 8.2 74 6-87 7-93 (325)
299 1rli_A Trp repressor binding p 24.2 72 0.0025 27.7 4.4 29 6-35 4-35 (184)
300 3o9z_A Lipopolysaccaride biosy 23.9 3.1E+02 0.01 26.2 9.4 31 4-34 2-32 (312)
301 3gl9_A Response regulator; bet 23.7 60 0.002 25.8 3.5 75 6-88 3-83 (122)
302 2j48_A Two-component sensor ki 23.4 47 0.0016 25.5 2.8 76 6-88 2-82 (119)
303 3luf_A Two-component system re 23.4 1.2E+02 0.0042 28.1 6.1 75 6-87 5-80 (259)
304 2a9o_A Response regulator; ess 23.3 46 0.0016 26.0 2.7 77 5-88 1-79 (120)
305 3to5_A CHEY homolog; alpha(5)b 23.1 47 0.0016 28.0 2.8 74 7-88 14-94 (134)
306 2q62_A ARSH; alpha/beta, flavo 23.0 89 0.0031 29.3 5.0 34 3-37 32-73 (247)
307 3klb_A Putative flavoprotein; 22.9 55 0.0019 28.3 3.3 28 5-32 4-33 (162)
308 1uc8_A LYSX, lysine biosynthes 22.8 76 0.0026 29.4 4.6 71 8-86 2-78 (280)
309 3f6p_A Transcriptional regulat 22.5 72 0.0024 25.1 3.8 75 6-88 3-80 (120)
310 1tq8_A Hypothetical protein RV 22.4 3.3E+02 0.011 22.8 8.5 34 224-257 17-54 (163)
311 3d02_A Putative LACI-type tran 22.3 1.7E+02 0.0057 27.2 7.0 75 6-88 5-93 (303)
312 1qkk_A DCTD, C4-dicarboxylate 22.0 72 0.0025 26.4 3.8 76 6-88 4-82 (155)
313 4dad_A Putative pilus assembly 21.8 68 0.0023 26.2 3.6 75 6-88 21-102 (146)
314 3ilh_A Two component response 21.8 71 0.0024 25.8 3.7 78 5-89 9-100 (146)
315 3fg9_A Protein of universal st 21.8 3.3E+02 0.011 22.3 8.2 36 224-259 15-55 (156)
316 3g85_A Transcriptional regulat 21.5 1.4E+02 0.0048 27.6 6.2 72 6-87 12-97 (289)
317 1jye_A Lactose operon represso 21.5 2.3E+02 0.0078 27.2 8.0 73 6-87 62-148 (349)
318 3rqi_A Response regulator prot 21.2 70 0.0024 27.7 3.7 50 5-54 7-57 (184)
319 4hs4_A Chromate reductase; tri 21.2 27 0.00094 31.6 0.9 79 6-88 7-116 (199)
320 2zuv_A Lacto-N-biose phosphory 21.1 80 0.0027 34.3 4.5 67 21-88 473-543 (759)
321 3cfy_A Putative LUXO repressor 20.9 51 0.0017 26.9 2.6 75 7-88 6-83 (137)
322 4ffl_A PYLC; amino acid, biosy 20.9 1E+02 0.0035 30.2 5.2 33 5-38 1-33 (363)
323 3f6c_A Positive transcription 20.7 93 0.0032 24.7 4.2 77 6-89 2-82 (134)
324 1uz5_A MOEA protein, 402AA lon 20.3 88 0.003 31.8 4.6 44 16-59 207-257 (402)
325 2bon_A Lipid kinase; DAG kinas 20.3 1.2E+02 0.0042 29.5 5.6 77 5-90 29-119 (332)
326 3lou_A Formyltetrahydrofolate 20.3 1.7E+02 0.006 28.1 6.5 54 224-287 95-151 (292)
327 3fvw_A Putative NAD(P)H-depend 20.2 1.1E+02 0.0039 27.1 4.9 71 5-78 2-94 (192)
328 3s40_A Diacylglycerol kinase; 20.2 1.1E+02 0.0039 29.3 5.3 79 3-90 6-98 (304)
329 3jvd_A Transcriptional regulat 20.1 68 0.0023 30.9 3.7 51 6-57 65-128 (333)
No 1
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=100.00 E-value=1.5e-135 Score=1106.81 Aligned_cols=517 Identities=43% Similarity=0.749 Sum_probs=465.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
.++|+|||||+||+++++|+|+++|++++++|++.+.+++...++|||||||||+++++++.+++...+++.+.++++|+
T Consensus 7 ~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~Pv 86 (556)
T 3uow_A 7 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPI 86 (556)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCE
Confidence 37899999999999999999999999999999988888876668999999999999999888888889999988899999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCC-------------------------------ccccCC-CCCce
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS-------------------------------GIFGNK-KVGHH 132 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~-------------------------------~l~~~~-~~~~~ 132 (531)
||||+|||+|++++||+|.+....|+|+..+++..++ ++|+++ ++.
T Consensus 87 LGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~-- 164 (556)
T 3uow_A 87 FGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDI-- 164 (556)
T ss_dssp EEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSE--
T ss_pred EEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhcccccCc--
Confidence 9999999999999999999998889999998887554 799998 766
Q ss_pred EEEEeeccCccccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhh
Q 039743 133 QVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDE 212 (531)
Q Consensus 133 ~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~ 212 (531)
+.+||+|+|.|..+|+|++++|++++++++|++++++++||+|||||+++++.|.+||+||+.++|+|+++|+|++++++
T Consensus 165 ~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~~i~g~~~~~~~~~~~~~ 244 (556)
T 3uow_A 165 TTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRYHEL 244 (556)
T ss_dssp EEEEEEEEEEEEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCC-CCHHHHHHH
T ss_pred eEEEEEccceeeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHHHHHHhhcccccccccccccc
Confidence 89999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhC-CCcEEEEECchHH
Q 039743 213 EVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDL-HLPVTCVDATDQF 291 (531)
Q Consensus 213 ~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~l-gi~~~vvd~~~~f 291 (531)
.++.||++ ++.+++++|+|||+||+|+|+++++++|.+++|+|+|+|+++++|.+++.+.+|+.+ |++++++|+++.|
T Consensus 245 ~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~G~~v~~v~vd~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f 323 (556)
T 3uow_A 245 ELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDMNITKIDASENF 323 (556)
T ss_dssp HHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHH
T ss_pred ceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHhCCeEEEEEEecCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHH
Confidence 99999998 768899999999999999999999999999999999999999999999977799999 9999999999999
Q ss_pred HHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 292 LSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 292 ~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
++.+.++++|+.||+++|+.|+++|.++|++++.. ++.++|++||+|||++|+....|+ +++|++|||++++++
T Consensus 324 ~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~--~~~~~la~Gt~y~D~ies~~~~g~----~~~iks~~n~~gl~~ 397 (556)
T 3uow_A 324 LSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDID--INKTFLLQGTLYPDIIESKCSKNL----SDTIKTHHNVGGLPK 397 (556)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCC--GGGEEEECCCCHHHHHHHSCC----------------------
T ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCc--ccccccccCccChHHHhhcccccc----cceeccccccccccc
Confidence 99999999999999999999999999999988720 012899999999999998765565 789999999999999
Q ss_pred ccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccc
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIW 451 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~ 451 (531)
.+.+++++||++|+|+|||++|+++|||.+++||+||||||||+||+|++|+|+| +++++||++++++|+++|||+++|
T Consensus 398 ~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p~p~la~Ri~g~it~e~l-~~~~~a~~~~~~~~~~~~~~~~~~ 476 (556)
T 3uow_A 398 NLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIRVIGEINKHKL-NILREVDDIFINDLKQYGLYNQIS 476 (556)
T ss_dssp -CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCCTTTTTTTBCSSCCHHHH-HHHHHHHHHHHHHHHHTTCGGGCS
T ss_pred ccccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCCCCCccccccCccCHHHH-HHHHHHHHHHHHHHHHcCCCCCcc
Confidence 8899999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 452 QAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 452 q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|+|+||||+||||||||+|||+|+|+||+|+|.|||||||+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 477 q~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpp~t~e~~ 556 (556)
T 3uow_A 477 QAFAVLLSSKSVGVRGDARSYDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILSEVKGVNRILYDVSSKPPATIEFE 556 (556)
T ss_dssp EEEEEEEEEEEC--------CEEEEEEEEEEESSSSCEEECCCCHHHHHHHHHHHHHHSTTEEEEEEECCCBTTSCSSCC
T ss_pred ceeEEEeCccccccCCCccCCCCeEEEeeecCCCCcccCcccCCHHHHHHHHHHHhhcCCCCCeEEeeCCCCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=100.00 E-value=2.1e-132 Score=1078.54 Aligned_cols=511 Identities=48% Similarity=0.840 Sum_probs=434.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|++|++|++++++|++.+.+++...++|||||||||+++++++.++..+.+++ .++|||
T Consensus 11 ~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~~~~~~~~~~~~----~~~PvL 86 (527)
T 3tqi_A 11 HRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLSHTLRAPAFIFE----IGCPVL 86 (527)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC---------CCCSTTT----SSSCEE
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccCCChhhHHHHHh----cCCCEE
Confidence 5899999999999999999999999999999988877776668899999999999998877766655544 499999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCC------ceEEEEeeccCccccCCCCcEEEEEeCCC
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVG------HHQVVWMSHGDEAVVLPDGFEVVARSQQG 159 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~------~~~~v~~~H~~~v~~lp~g~~vla~s~~~ 159 (531)
|||||||+|+.++||+|.+...++||++.+++..++++|+++++. ..+.+||+|+|.|..+|+||+++|+++++
T Consensus 87 GIC~G~Qlla~~lGG~V~~~~~~e~G~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~lp~g~~v~A~s~~~ 166 (527)
T 3tqi_A 87 GICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNS 166 (527)
T ss_dssp EETHHHHHHHHHSSSCBC-----CEEEEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCSCCTTCEEEEEETTE
T ss_pred EEChHHHHHHHHcCCeEEeCCCccccceEEEEcCCChhhcCCccccccccccceEEEEEcccchhccCCCCEEEEEeCCC
Confidence 999999999999999999998899999999998888999999861 12899999999999999999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHH
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTV 239 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v 239 (531)
+++|+++.++++||+|||||+++++.|.+||+||+.++|+|+++|+|.+++++.++.+++.++ .+++++|+|||+||+|
T Consensus 167 ~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~~~~~~~~~i~~i~~~v~-~~kvlvalSGGvDSsv 245 (527)
T 3tqi_A 167 PLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQEKVG-KEQVIVGLSGGVDSAV 245 (527)
T ss_dssp EEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCCSHHHHHHHHHHHHHHHT-TSCEEEECTTTHHHHH
T ss_pred cEEEEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhhHHHHHHHHHHHHHHhcC-CCeEEEEEecCcCHHH
Confidence 999999988999999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHH
Q 039743 240 AATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAF 319 (531)
Q Consensus 240 ~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~ 319 (531)
+|+++++++|.+++|+|+|+|+++.+|.+++.+.+|+++|++++++|+++.|.+.++++++|+.+|++|++.|+++|.++
T Consensus 246 la~ll~~~~G~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~ 325 (527)
T 3tqi_A 246 TATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQ 325 (527)
T ss_dssp HHHHHHHHHGGGEEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCeEEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999989999988779999999999999999998888899999999999999999999999
Q ss_pred HHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCC
Q 039743 320 AHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVP 399 (531)
Q Consensus 320 a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp 399 (531)
|+++| +++|++||+++|++|+..+. +|. +.++++|||++++++...+++++||.+++|+|||++|+++|+|
T Consensus 326 A~~~g------~~~la~Gh~~dD~~Et~~~~-~g~--~~~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGlp 396 (527)
T 3tqi_A 326 AKKLN------VKWLGQGTIYPDVIESAKTK-TGK--GHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLP 396 (527)
T ss_dssp TTTTT------CCEEECCCCHHHHHCC-----------------------------CEECTTTTCCHHHHHHHHHHHTCC
T ss_pred HHHcC------CCEEEccccCCccccccccC-CCh--hheeeeecccccCcccccCccccchhcCCHHHHHHHHHHcCCC
Confidence 99887 89999999999999986543 221 6789999999999988899999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEE
Q 039743 400 EQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALR 479 (531)
Q Consensus 400 ~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr 479 (531)
.+++|++|||+|||++|++|++|++++ +.++++|++++++|++.|+|+++||+|++|+|+||||||||+|||+|+|+||
T Consensus 397 ~~~v~~~P~p~~~l~~R~~g~vt~e~l-~~~~~ae~i~~~~l~~~~l~~~~~q~~~~~~~~~~~gv~~d~r~~~~~~~~r 475 (527)
T 3tqi_A 397 ADLIYRHPFPGPGLAIRILGEVSAEYI-NILKQADAIFIEELKKSDYYHQVSQAFAVFMPLKSVGVKGDARHYGYIIALR 475 (527)
T ss_dssp HHHHTCCCCCTTGGGSSBCSCCCSHHH-HHHHHHHHHHHHHHHTTTCGGGSSEEEEEEEEEEEC--------CEEEEEEE
T ss_pred hhhhccCCCCCCCcceecCCccCHHHH-HHHHHHHHHHHHHHHHcCCccccchheeEEcCccccccCCCccccCeeEEEE
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 480 AVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 480 ~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
+|+|.|||||||+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 476 ~~~~~d~m~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~kpp~tie~e 527 (527)
T 3tqi_A 476 AVKTVDFMTAQWADLPHEFLSKVSHRIVNEIKEVSRVVYDMTNKPPATIEWE 527 (527)
T ss_dssp EEC-------CBCCCCHHHHHHHHHHHHHHSSSCCCEEEECCCTTTSCSCC-
T ss_pred eecCCCcccCCcccCCHHHHHHHHHHHhhcCCCCCeEEEeCCCCCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999998
No 3
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=100.00 E-value=5.7e-128 Score=1044.27 Aligned_cols=508 Identities=49% Similarity=0.838 Sum_probs=463.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|+|+++|++++++|++.+.+++...++|||||||||++++++..+++.+.++ +.++|||
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~~~~~~~~~~----~~g~PvL 83 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVF----EAGVPVF 83 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGG----TSSSCEE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccCCcchHHHHH----HCCCCEE
Confidence 579999999999999999999999999999998887777555789999999999999887777776555 4599999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCC--------CceEEEEeeccCccccCCCCcEEEEEeC
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKV--------GHHQVVWMSHGDEAVVLPDGFEVVARSQ 157 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~--------~~~~~v~~~H~~~v~~lp~g~~vla~s~ 157 (531)
|||+|||+|+.++||+|.+...+++|++.+++.+++++|+++++ . +.+||+|+|.|..+|+||+++|+++
T Consensus 84 GIC~G~Qlla~~~GG~V~~~~~~e~G~~~v~~~~~~~L~~~l~~~~~~~~~~~--~~v~~~H~~~V~~lp~g~~v~A~s~ 161 (525)
T 1gpm_A 84 GVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPL--LDVWMSHGDKVTAIPSDFITVASTE 161 (525)
T ss_dssp EETHHHHHHHHHHTCEEECCSSCEEEEEEEEECSCCTTTTTCCSEECTTSCEE--EEEEEEECSEEEECCTTCEEEEECS
T ss_pred EEChHHHHHHHHcCCEEEeCCCcccceEEEEeCCCCHhhccCccccccccccc--eEEEEEccceeeeCCCCCEEEEECC
Confidence 99999999999999999999889999999999877899999987 5 8999999999999999999999999
Q ss_pred CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCH
Q 039743 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDS 237 (531)
Q Consensus 158 ~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS 237 (531)
+++++|+++.++++||+|||||+++++.|.++|+||+.++|+|+++|+|++++++.++.||++++ .+++++|+|||+||
T Consensus 162 ~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~~~~~~~~~~~~ir~~v~-~~~vvvalSGGvDS 240 (525)
T 1gpm_A 162 SCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVG-DDKVILGLSGGVDS 240 (525)
T ss_dssp SCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCCHHHHHHHHHHHHHHHHT-TCEEEEECCSSHHH
T ss_pred CCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccchHHHHHHhhhhhhhhhhc-ccceEEEecCCCCH
Confidence 99999999988999999999999999999999999999999999999999999999999999998 58999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHH
Q 039743 238 TVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFD 317 (531)
Q Consensus 238 ~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~ 317 (531)
+|+|+++++++|.+++|+|+|+|+++.+|.+++.+.+|+.+|++++++|+++.|.+.++++++|+.+|++||+.|+++|.
T Consensus 241 sv~a~ll~~a~G~~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~ 320 (525)
T 1gpm_A 241 SVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFD 320 (525)
T ss_dssp HHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHH
Confidence 99999999999999999999999998888888877689999999999999998888888888999899999999999999
Q ss_pred HHHHHh-hhhcCCCCcEEEecccCCCccccCC-CCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHH
Q 039743 318 AFAHDL-EQKLGKKPAYLVQGTLYPDVIESCP-PPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRI 395 (531)
Q Consensus 318 ~~a~~~-g~~~~~~~~~l~~Gt~~~D~~es~~-~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~ 395 (531)
++|+++ | +++|++||+++|++|+.. ..+. ++++|+|||++++++...+++++||.+++|+|||++|++
T Consensus 321 ~~A~~~~g------~~~l~~Gt~~~D~~E~~~~~~~~----s~~iks~~~l~gl~~~~~~~~i~PL~~l~K~EVr~la~~ 390 (525)
T 1gpm_A 321 EEALKLED------VKWLAQGTIYPDVIESAASATGK----AHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLE 390 (525)
T ss_dssp HHHHHSSS------EEEEECCCCHHHHHHTTC--------------------------CCEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHhcCC------CCEEEeCCCCcchhhhcCccccc----cccccccccccccccccCCcEEehhhcCCHHHHHHHHHH
Confidence 999988 6 899999999999999731 2232 678999999999998888899999999999999999999
Q ss_pred cCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeE
Q 039743 396 LNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHV 475 (531)
Q Consensus 396 lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~ 475 (531)
+|+|.+++|++|||+|||++|++|++|+++| ..++++|.+++++|++.|+|+++||+|++|+|+||||||||+|||+|+
T Consensus 391 lglp~~i~~~~P~~~p~La~ri~g~~t~~~l-~~~~~~d~~l~~~l~~~~l~~~~~q~~~~~~~~~~~g~~~~~r~~~~~ 469 (525)
T 1gpm_A 391 LGLPYDMLYRHPFPGPGLGVRVLGEVKKEYC-DLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWV 469 (525)
T ss_dssp TTCCHHHHTSCCCCTTGGGGTBCSSCCHHHH-HHHHHHHHHHHHHHHHTTCGGGSSEEEEEEEEEEEECCTTTCCSEEEE
T ss_pred cCCCHHhcccCCCCchhhcccccCCcCHHHH-HHHHHHHHHHHHHHHHcCCchhhhhhhhhcCCcceeeecCCccccceE
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 476 VALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 476 ~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
++||+|+|+|||||+|+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 470 ~~~~~~~~~d~m~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~kpp~t~e~e 525 (525)
T 1gpm_A 470 VSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE 525 (525)
T ss_dssp EEEEEEEEEETTEEEECCCCHHHHHHHHHHHHHHSTTEEEEEEECCCBTTSCSSCC
T ss_pred EEEEEEcccccccCCcccCCHHHHHHHHHHHHhcCCCcceEEeeCCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999
No 4
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=100.00 E-value=1.8e-126 Score=1028.27 Aligned_cols=502 Identities=50% Similarity=0.846 Sum_probs=447.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
||+|||||+||+++++|+++++|++++++|++.+.+++...++|||||||||++++++..+++.+.++ +.++||||
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~~~~~----~~~~PvLG 76 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLF----SSGLPLLG 76 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGGGG----CSSCCEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCCcchHHHHH----hCCCCEEE
Confidence 39999999999999999999999999999998887777656789999999999999887788776555 45999999
Q ss_pred eeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVEN 166 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~ 166 (531)
||+|||+|++++||+|.+...+++|++.+++.. +++|+++++. +.+||+|+|.|..+|+|++++|++++++++|+++
T Consensus 77 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~-~~l~~~~~~~--~~v~~~H~~~v~~lp~g~~v~A~s~~~~i~ai~~ 153 (503)
T 2ywb_A 77 ICYGMQLLAQELGGRVERAGRAEYGKALLTRHE-GPLFRGLEGE--VQVWMSHQDAVTAPPPGWRVVAETEENPVAAIAS 153 (503)
T ss_dssp ETHHHHHHHHTTTCEEECC---CEEEEECSEEC-SGGGTTCCSC--CEEEEECSCEEEECCTTCEEEEECSSCSCSEEEC
T ss_pred ECHHHHHHHHHhCCeEeeCCCCccceEEEEecC-cHHhhcCCCc--cEEEEECCCccccCCCCCEEEEEECCCCEEEEEe
Confidence 999999999999999999988999999998877 8899999877 8999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHH
Q 039743 167 REKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHK 246 (531)
Q Consensus 167 ~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k 246 (531)
+++++||+|||||+++++.|.++|+||+ ++|+++++|+|.+++++.++.++++++ ++++++|+|||+||+|+|+++++
T Consensus 154 ~~~~~~gvQFHPE~~~~~~g~~ll~~F~-~~~~~~~~~~~~~~~~~~i~~ir~~~~-~~kvvvalSGGvDSsvla~ll~~ 231 (503)
T 2ywb_A 154 PDGRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWTPEHVLEELLREVRERAG-KDRVLLAVSGGVDSSTLALLLAK 231 (503)
T ss_dssp TTSSEEEESBCTTSTTSTTHHHHHHHHH-HHTTCCCCCCHHHHHHHHHHHHHHHHT-TSEEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCcccccccHHHHHHHH-HHhhhhccccchhhhHHHHHhhhhhcc-CccEEEEecCCcchHHHHHHHHH
Confidence 8899999999999999999999999999 999999999999999999999999997 58999999999999999999999
Q ss_pred HhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHh-hh
Q 039743 247 AIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL-EQ 325 (531)
Q Consensus 247 ~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~-g~ 325 (531)
+ |.+++|+|+|+|+++++|.+.+.+ +|+++|++++++++++.|.+.+.++++|+.+|++||+.|+++|.+.|+++ |
T Consensus 232 ~-g~~v~av~vd~g~~~~~e~~~v~~-~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g- 308 (503)
T 2ywb_A 232 A-GVDHLAVFVDHGLLRLGEREEVEG-ALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGP- 308 (503)
T ss_dssp H-TCEEEEEEEECSCSCTTHHHHHHH-HHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred c-CCeEEEEEEeCCCCChHHHHHHHH-HHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCC-
Confidence 9 999999999999998888888877 78889999999999998888888888999899999999999999999988 6
Q ss_pred hcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 326 KLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 326 ~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
+++|++||+++|++|+..+ |. ++++|+|+|++++++...+++++||.+++|+|||++++++|+|..++|+
T Consensus 309 -----~~~la~G~~~~D~~Et~~~-g~----~~~iks~~~l~~l~~~~~~~ii~PL~~l~K~EVr~~a~~~glp~~i~~~ 378 (503)
T 2ywb_A 309 -----FRFLAQGTLYPDVIESAGG-HG----AAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLR 378 (503)
T ss_dssp -----CSEEECCCCHHHHHC----------------------CCCSSCCCEEECTTTTCCHHHHHHHHHHTTCCHHHHSC
T ss_pred -----CCEEEECCcCccchhhccC-Cc----ccccccccccccccccccCceEehhhcCCHHHHHHHHHHcCCChhheec
Confidence 8999999999999997543 43 6789999999999988888999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCC
Q 039743 406 HPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQD 485 (531)
Q Consensus 406 ~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d 485 (531)
+|||+|||++|++|++|++++ +.++++|++++++|++.|+|+++||+|++|+|+||||||||+|||+|+++||+|+|.|
T Consensus 379 ~P~~~~~La~R~~g~~t~~~l-~~~~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~~g~~gd~r~~~~~~~~~~~~~~~ 457 (503)
T 2ywb_A 379 HPFPGPGLAVRVLGEVTEERL-EILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTED 457 (503)
T ss_dssp CCCCTTGGGGGBSSCCCHHHH-HHHHHHHHHHHHHHHHHTCGGGSSEEEEEEEEC------------CEEEEEEEEECSS
T ss_pred CCCCCcchhhhccccccHHHH-HHHHHHHHHHHHHHHhcccccccchheeeecCcceeeccCCccccceeEEEEEeccCC
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 486 GMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 486 ~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
||||||+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 458 ~~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~kpp~t~e~e 503 (503)
T 2ywb_A 458 FMTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503 (503)
T ss_dssp SSCBEECCCCHHHHHHHHHHHHHHCTTCCEEEEECCCBTTSCSSCC
T ss_pred ccccCccCCCHHHHHHHHHHHHhcCCCcceEEeeCCCCCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999
No 5
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=100.00 E-value=5.7e-116 Score=970.48 Aligned_cols=505 Identities=39% Similarity=0.630 Sum_probs=444.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|+++++|++++++|++.+.+++...++|||||||||+++++++.+++.+.+++ .++|||
T Consensus 30 ~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i~~----~g~PvL 105 (697)
T 2vxo_A 30 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFT----IGKPVL 105 (697)
T ss_dssp CCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CCCCCGGGTT----SSCCEE
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccchhHHHHHHh----CCCCEE
Confidence 4799999999999999999999999999999998887776678999999999999998877887766554 599999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|+.++||+|.+...+++|++.+++..++++|+++++. +.+|++|+|.|..+|+|++++|.+++ .++|++
T Consensus 106 GIC~G~QlLa~~lGG~v~~~~~~e~G~~~v~~~~~~~Lf~~l~~~--~~v~~~H~~~V~~lp~g~~vlA~s~~-~i~ai~ 182 (697)
T 2vxo_A 106 GICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE--EVVLLTHGDSVDKVADGFKVVARSGN-IVAGIA 182 (697)
T ss_dssp EEEHHHHHHHHHTTCCBCC-------CEEEEECTTSGGGTTCCSE--EEECCCSSCCBSSCCTTCEEEEEETT-EEEEEE
T ss_pred EECHHHHHHHHHhCCeEeecCCCccceEEEEecCCChhhhcCCcc--CcceeecccceecCCCCeEEEEEeCC-ceEEEE
Confidence 999999999999999999988899999999998888999999877 89999999999999999999999966 999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHH
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVH 245 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~ 245 (531)
+.++++||+|||||+++++.|.+||+||++++|+|+++|+|+++.++.++.||++++ .+++++|+|||+||+|+|++++
T Consensus 183 ~~~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~~~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~ 261 (697)
T 2vxo_A 183 NESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLN 261 (697)
T ss_dssp ETTTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCCHHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHH
T ss_pred eCCCCEEEEEecccCCCCccchhhhhhhhhccccccccchhhHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 6899999999999999999999
Q ss_pred HHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHh--------------------hcCCCCcccc
Q 039743 246 KAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK--------------------LKGVIDPETK 304 (531)
Q Consensus 246 k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~--------------------l~~~~~p~~k 304 (531)
+++| .+++|+|+|+|+++++|.+.+.+ +|+++|++++++|+++.|... +.++.+|+.|
T Consensus 262 ~alG~~~V~aV~vd~g~~~~~e~e~a~~-~a~~lGI~~~vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~k 340 (697)
T 2vxo_A 262 RALNQEQVIAVHIDNGFMRKRESQSVEE-ALKKLGIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEK 340 (697)
T ss_dssp HHSCGGGEEEEEEECSCCCSSTTHHHHH-HHHHTTCCEEEEECHHHHHTCCCBCC----------CBCCCGGGCCCHHHH
T ss_pred HhcCCceEEEEEeccccCCcchHHHHHH-HHHHhCCcEEEecchHHHHhhhhhhcccccccchhcccCcCcccccCHHHH
Confidence 9999 99999999999998888888876 889999999999999877552 3345567778
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcCCCCc----EEEecccCCCccccCCC--CCCCCCcccccccccccCCCCccc--ccc
Q 039743 305 RKIIGKEFICIFDAFAHDLEQKLGKKPA----YLVQGTLYPDVIESCPP--PGTGRTHSHTIKSHHNVGGLPKDM--KLK 376 (531)
Q Consensus 305 r~~~~~~~~~~~~~~a~~~g~~~~~~~~----~l~~Gt~~~D~~es~~~--~g~g~~~~~~ikt~~~~~~l~~~~--~~~ 376 (531)
|+++|+.|+++++++|+++| ++ +|++||+++|++|+... .+. +..+++|||+++++... ..+
T Consensus 341 R~iig~~~~~v~~~~A~~~g------~~~~~~~LatG~~~~D~iEs~~~~l~~g----~~~iks~~nv~g~~~~~~~~~~ 410 (697)
T 2vxo_A 341 RKIIGDTFVKIANEVIGEMN------LKPEEVFLAQGTLRPDLIESASLVASGK----AELIKTHHNDTELIRKLREEGK 410 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------CCTTSEEEECCCSSCCSBCCHHHHHHSC----CCGGGSCCSSCHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHHHcC------CCcccEEEEEeccChhhhhhhhhhhhcC----ccccccccccchhhHHhccCCE
Confidence 99999999999999999987 55 99999999999997432 122 56799999999987654 367
Q ss_pred eecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcc------hHHHHHhhhhHHHHHHH-HHcCcccc
Q 039743 377 LIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEG------NSLDILRQVDEIFIQSI-KEAGLYDL 449 (531)
Q Consensus 377 ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~------~l~~~~~~~d~~~~~~l-~~~~~~~~ 449 (531)
+++||++++|+|||++|+++|+|.++++++|||||||++|+.++.+++ .+-++++.++. .+++| ++.|+|++
T Consensus 411 ~i~PL~~L~K~EVr~la~~lGlP~~i~~r~Ps~gpgL~~r~~~~de~~~g~~Y~~ld~iL~~~~~-~~~el~~~~g~~~~ 489 (697)
T 2vxo_A 411 VIEPLKDFHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVAD-FSASVKKPHTLLQR 489 (697)
T ss_dssp EECGGGGSCHHHHHHHHHHTTCCHHHHTCCCCCTTGGGGGBCCBSSCCCCTTHHHHHHHHHHHHT-HHHHTTSCCHHHHH
T ss_pred EEEecccCCHHHHHHHHHHcCCCcceeeCCCCCCCccccCccccchhhhcCCHHHHHHHHHHHhh-hHHHHHHhhChHHH
Confidence 999999999999999999999999999999999999999987665443 34357888888 77888 77888888
Q ss_pred c------------------ccceeeecCcceeeecCCCceeeeEEEE---------------------------------
Q 039743 450 I------------------WQAFAVFLPVRSVGVQGDQRTHSHVVAL--------------------------------- 478 (531)
Q Consensus 450 ~------------------~q~~~vllp~~~~gv~gd~r~~~~~~~l--------------------------------- 478 (531)
+ ||+|++|||+||||||||+|||+|+++|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~svgv~gd~r~y~~~~~l~~~~~~~w~~~~~~~~~i~~~~~~~nrv~~~~~ 569 (697)
T 2vxo_A 490 VKACTTEEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPRMCHNVNRVVYIFG 569 (697)
T ss_dssp HHHHSCHHHHHHHHHHHHHSCEEEEEEEEEEEEEETTEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHBTTEEEEEEECS
T ss_pred HhhhhcchhhhhhhccccccceeEEecCCceeeeCCCCccccceEEEecCCCCchHHHHHHHhhcchhccccceeEeecC
Confidence 8 6999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------EeeecCCC
Q 039743 479 ------------------------------------------------------------------------RAVTSQDG 486 (531)
Q Consensus 479 ------------------------------------------------------------------------r~~~~~d~ 486 (531)
|+|+|+||
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~lr~~d~~~~~~l~~~~~~~~~~q~~vv~~p~~~~~~~~~~~~~~~~~v~~r~~~~~d~ 649 (697)
T 2vxo_A 570 PPVKEPPTDVTPTFLTTGVLSTLRQADFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSDF 649 (697)
T ss_dssp SCCSSCCSSCCCBCSCHHHHHHHHHHHHHHHHHHHHTTCGGGCSBCCEEEESCCCCCCGGGTCCCCCEEEEECCBBCSSS
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHhcccceeeeEEEEEEEeeecCCCccccCCccceeEEEEEEcccCC
Confidence 99999999
Q ss_pred cccccc----cccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 487 MTADWY----YFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 487 mt~~~~----~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|||+|+ +||+++|++|++|| |+|||||||+||||||||||||||
T Consensus 650 mt~~~~~~~~~~p~~~l~~~~~~i-~~~~~i~rv~yd~t~kpp~t~ewe 697 (697)
T 2vxo_A 650 MTGIPATPGNEIPVEVVLKMVTEI-KKIPGISRIMYDLTSKPPGTTEWE 697 (697)
T ss_dssp SSBBCCCBTTTBCHHHHHHHHHHH-HHSTTEEEEEEECCCBTTSCSSCC
T ss_pred ceeeecCcCCCCCHHHHHHHHHHH-hccCCcceEEccCCCCCCCCccCC
Confidence 999999 99999999999999 999999999999999999999999
No 6
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=100.00 E-value=2.5e-78 Score=613.67 Aligned_cols=308 Identities=51% Similarity=0.819 Sum_probs=274.5
Q ss_pred ccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 204 w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
|+|++++++.++.|+++++ +++++|++|||+||+++|+++++++|.+++|+|+|+|+.+.+|.+.+.+.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~g~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~ 79 (308)
T 2dpl_A 1 MDWGRFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLH 79 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhhCCCEEEEEEcCCCCChHHHHHHHHHHHHHcCCcEE
Confidence 5788899999999999998 689999999999999999999999899999999999998888888887767778999999
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++++++.|.+.+.+..+|+.+|++||+.+++++.+.|+++| +++|++||+++|++|+. + .++++
T Consensus 80 vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g------~~~la~Gh~~dD~~Et~----~------~iks~ 143 (308)
T 2dpl_A 80 YVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIG------AEYLIQGTIAPDWIESQ----G------KIKSH 143 (308)
T ss_dssp EEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHT------CSEEECCCCCC----------------------
T ss_pred EEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcC------cCEEEECCCCccchhhc----c------chhhh
Confidence 99999888888888888988898999999999999999998 89999999999999962 2 56889
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHH
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKE 443 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~ 443 (531)
+++++++...++++++||.+++|+||+++++++|+|..++|++|||+|||++|++|++|++++ +.++++|+++++++++
T Consensus 144 ~~~~~l~~~~~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P~~~~~La~R~~g~~t~~~l-~~~r~~~~~l~~~~~~ 222 (308)
T 2dpl_A 144 HNVGGLPEKLNLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMPFPGPGLAVRVIGEVTPEKI-RIVREANAIVEEEVER 222 (308)
T ss_dssp ---------CCCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCCCCTTGGGGGBSSSCCHHHH-HHHHHHHHHHHHHHHH
T ss_pred hccccCCccCCCeEEEEcccCCHHHHHHHHHHhCCCceeeecCCCCcccccccccCcccHHHH-HHHHHHHHHHHHHHHH
Confidence 999899887788999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCC
Q 039743 444 AGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSK 523 (531)
Q Consensus 444 ~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k 523 (531)
. |.++||+|++|+|+++|||+||.|+|+|+++||+|+|.|||||+|+++||++|++||+||+|+||||||||||||||
T Consensus 223 ~--~~~~~~~~~~l~~v~~~~~~gd~r~y~~~~~~r~~~~~d~mt~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~k 300 (308)
T 2dpl_A 223 A--GLRPWQAFAVLLGVKTVGVQGDIRAYKETIAVRIVESIDGMTANAMNVPWEVLQRIAFRITSEIPEVGRVLYDITNK 300 (308)
T ss_dssp T--TCCCSEEEEEECCCCEEEESSSSEEEEEEEEEEEEECSSSSSBEECCCCHHHHHHHHHHHHHHCTTEEEEEEECCCB
T ss_pred H--hhccceeeEEecCceeeeecCCcccccceEEEEEEccCccccCCcccCCHHHHHHHHHHHHhcCCCcceEEeeCCCC
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccC
Q 039743 524 PPSTIEWE 531 (531)
Q Consensus 524 ~p~~~~~~ 531 (531)
||||||||
T Consensus 301 pp~t~e~~ 308 (308)
T 2dpl_A 301 PPATIEFE 308 (308)
T ss_dssp TTBCSSCC
T ss_pred CCCCCCCC
Confidence 99999998
No 7
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=323.67 Aligned_cols=194 Identities=38% Similarity=0.636 Sum_probs=168.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||+|++|+++++++|+++|++++++|++.+.+++...++|||||||||+++++...+++.+.++ ++++|+|
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~~~~~~~~~~~----~~~~Pil 100 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIF----TIGKPVL 100 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCGGGG----TSSCCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCcccccccchhHHHHHH----HcCCCEE
Confidence 579999999999999999999999999999998776666556799999999999888665666655443 4599999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|+.++||+|.+.+.+++|++.+++++++++++++++. +.++++|++.|..+|++++++|.+ ++.++|++
T Consensus 101 GIC~G~Qll~~~~GG~v~~~~~~~~G~~~v~~~~~~~l~~~l~~~--~~v~~~H~~~v~~l~~~~~vlA~s-~~~i~ai~ 177 (218)
T 2vpi_A 101 GICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE--EVVLLTHGDSVDKVADGFKVVARS-GNIVAGIA 177 (218)
T ss_dssp EETHHHHHHHHHTTCCEEEEEECSCEEEEEEECTTSGGGTTCCSE--EEEEECSEEEESSCCTTCEEEEEE-TTEEEEEE
T ss_pred EEcHHHHHHHHHhCCceEeCCCCcccEEEEEEccCChhHhcCCCC--cEEeehhhhHhhhcCCCCEEEEEc-CCeEEEEE
Confidence 999999999999999999988889999999998888999999877 899999999999999999999999 56999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccc
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKL 206 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~ 206 (531)
+.++++||+|||||++.++.|.+||+||+.++|+++++|+|
T Consensus 178 ~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~~w~~ 218 (218)
T 2vpi_A 178 NESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTV 218 (218)
T ss_dssp ETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCCCCCC
T ss_pred ECCCCEEEEEcCCCCCCChhHHHHHHHHHHHHhCCCCCCCC
Confidence 98889999999999998888999999998899999999986
No 8
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=4.7e-39 Score=309.07 Aligned_cols=198 Identities=26% Similarity=0.465 Sum_probs=174.1
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCC-CCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGG-PHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGG-p~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
.|++|+++|+|++|+++++++|+++|+.+++++++.+.+++ .++|||||||| |+++++.. -...+.+.+.++++
T Consensus 12 ~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l--~~~DglIl~GG~p~~~~~~~---~~~~l~~~~~~~~~ 86 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSEL--DGLDGLVLSGGAPNIDEELD---KLGSVGKYIDDHNY 86 (212)
T ss_dssp CCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGG--TTCSEEEEEEECSCGGGTGG---GHHHHHHHHHHCCS
T ss_pred ccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHH--hCCCEEEECCCCCCCCcccc---cchhHHHHHHhCCC
Confidence 46789999999999999999999999999999987665555 45999999999 88887651 12334555667899
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEE
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ 162 (531)
|+||||+|||+|+.++||+|.+.+.+++|++.+++.+++++++++++. +.++++|++.+.++|++++++|.++++.++
T Consensus 87 PiLGIC~G~Qll~~~lGg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~--~~v~~~H~~~v~~l~~~~~vlA~s~d~~i~ 164 (212)
T 2a9v_A 87 PILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSE--ITVWENHNDEIINLPDDFTLAASSATCQVQ 164 (212)
T ss_dssp CEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEESCCCGGGTTCCSE--EEEEEEEEEEEESCCTTEEEEEECSSCSCS
T ss_pred CEEEEChHHHHHHHHhCCEEEcCCCcccCceeeEECCCChhHhcCCCc--eEEEeEhhhhHhhCCCCcEEEEEeCCCCEE
Confidence 999999999999999999999988789999999998888999999877 899999999999999999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccch
Q 039743 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENV 209 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~ 209 (531)
|++++++++||+|||||++.++.|.+||++|+ ++|+....|++++|
T Consensus 165 ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~-~~~~~~~~~~~~~~ 210 (212)
T 2a9v_A 165 GFYHKTRPIYATQFHPEVEHTQYGRDIFRNFI-GICASYREIQKENF 210 (212)
T ss_dssp EEEESSSSEEEESSCTTSTTSTTHHHHHHHHH-HHHHHHHHHHHC--
T ss_pred EEEECCCCEEEEEeCCCCCCCccHHHHHHHHH-HHHHHhhhccHhhc
Confidence 99998789999999999998888999999998 78988888888765
No 9
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=100.00 E-value=7.9e-37 Score=289.90 Aligned_cols=186 Identities=20% Similarity=0.307 Sum_probs=158.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
++|+|||++++|++.++++|+++|+++++++.+. +.+++...++|||||||||+++++........++++.+ +.++|+
T Consensus 2 ~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~Pv 80 (195)
T 1qdl_B 2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPI 80 (195)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCE
T ss_pred CEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcE
Confidence 3599999999999999999999999999999863 44455334799999999999876532112344677764 779999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCC--ccccCCCCCceEEEEeeccCccccCCCCcEEEEEe-CCCc
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSS--GIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARS-QQGA 160 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~--~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s-~~~~ 160 (531)
||||+|||+|+.++||+|.+.+..++| +..++.++++ ++++++++. +.++++|++.|.++|++++++|++ ++|.
T Consensus 81 LGIC~G~QlL~~~~gg~v~~~~~~~~g~~~~v~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~l~~~~~vla~s~~~g~ 158 (195)
T 1qdl_B 81 LGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKE--FKATRYHSLVVDEVHRPLIVDAISAEDNE 158 (195)
T ss_dssp EEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSE--EEEEEEEEEEEECCCTTEEEEEEESSSCC
T ss_pred EEEehHHHHHHHHhCCEEeccCCCcCCCceEEEECCCCHhHHHhcCCCc--eEEeccccchhhhCCCCcEEEEEECCCCc
Confidence 999999999999999999988666666 5667776667 899999877 999999999999999999999999 8999
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|+++.++++||+|||||++.++.|.+||+||+
T Consensus 159 i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~ 192 (195)
T 1qdl_B 159 IMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFL 192 (195)
T ss_dssp EEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHH
Confidence 9999998778999999999999889999999997
No 10
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=100.00 E-value=2.1e-36 Score=285.54 Aligned_cols=186 Identities=38% Similarity=0.637 Sum_probs=161.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
+|+|||+|++|.+++.++|+++|+.+++++.+.+.+++...++||||||||| ++.+ .....++++.+.++++|+||
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~~~---~~~~~~~i~~~~~~~~PilG 77 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SLEN---TGNCEKVLEHYDEFNVPILG 77 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CTTC---CTTHHHHHHTGGGTCSCEEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-Chhh---hhhHHHHHHHHhhCCCeEEE
Confidence 5999999999999999999999999999998776655544579999999998 5433 23345666666578999999
Q ss_pred eeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVEN 166 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~ 166 (531)
||+|||+|+.++||+|.+.+.+++|+..+.+...+++|+++++. +.++++|++.+.++|++++++|.++++.++|+++
T Consensus 78 IC~G~Q~l~~~~gg~v~~~~~~~~G~~~~~~~~~~~l~~~~~~~--~~~~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~ 155 (189)
T 1wl8_A 78 ICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEXEIFKGLPKR--LKVWESHMDEVKELPPKFKILARSETCPIEAMKH 155 (189)
T ss_dssp ETHHHHHHHHHHTCEEEECSCCSCEEEEEEESCC--CCTTSCSE--EEEEECCSEEEEECCTTEEEEEEESSCSCSEEEE
T ss_pred EcHHHHHHHHHhCCceecCCCcccCceeEEEecCchHHhCCCCc--eEEEEEeeeehhhCCCCcEEEEEcCCCCEEEEEe
Confidence 99999999999999999987789999998887777899988877 8999999999989999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 167 REKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 167 ~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
.++++||+|||||++.++.|.++|++|+ +.|+
T Consensus 156 ~~~~~~gvQfHPE~~~~~~g~~l~~~f~-~~~~ 187 (189)
T 1wl8_A 156 EELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 187 (189)
T ss_dssp SSSCEEEESSCTTSTTSTTHHHHHHHHH-HHHC
T ss_pred CCceEEEEecCCCcCCCcchHHHHHHHH-HHHh
Confidence 8777999999999998888999999998 6663
No 11
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=100.00 E-value=1.6e-35 Score=280.24 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=151.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcccc----CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITA----KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~----~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+|||++++|+++++++|+++|+++++++++.+.+++.. .+.+++||+|||+++.+. .....+++. .+++
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~---~~~~~l~~~-~~~~ 76 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEA---GCMPELLTR-LRGK 76 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGS---TTHHHHHHH-HBTT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhC---chHHHHHHH-HhcC
Confidence 37999999999999999999999999999998866555421 245679999999987653 235567765 5679
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcE
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAV 161 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v 161 (531)
+|+||||+|||+|+.++||++.+....++|.........+++|+++++. +.++++|++.+..+|++++++|.+ ++.+
T Consensus 77 ~PilGIC~G~Qll~~~~Gg~v~~~~~~~~g~~~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~lp~~~~v~a~~-~~~~ 153 (192)
T 1i1q_B 77 LPIIGICLGHQAIVEAYGGYVGQAGEILHGKATSIEHDGQAMFAGLANP--LPVARYHSLVGSNVPAGLTINAHF-NGMV 153 (192)
T ss_dssp BCEEEETHHHHHHHHHTSCCCCC---CCSSEEEEEEECCCGGGTTSCSS--EEEEECCC---CCCCTTCEEEEEE-TTEE
T ss_pred CCEEEECcChHHHHHHhCCEEEeCCCcEecceeEEecCCChHHhcCCCC--cEEEechhhHhhhCCCccEEEECC-CCcE
Confidence 9999999999999999999998776677887765545566899999887 999999999999999999999965 4678
Q ss_pred EEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+|+++.++++||+|||||+++++.|.++|+||+ +.|
T Consensus 154 ~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~-~~~ 189 (192)
T 1i1q_B 154 MAVRHDADRVCGFQFHPESILTTQGARLLEQTL-AWA 189 (192)
T ss_dssp EEEEETTTTEEEESSBTTSTTCTTHHHHHHHHH-HHH
T ss_pred EEEEECCCCEEEEEccCcccCCcccHHHHHHHH-HHH
Confidence 999998899999999999998899999999998 443
No 12
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=1.3e-32 Score=271.42 Aligned_cols=179 Identities=21% Similarity=0.312 Sum_probs=152.0
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCC---CCCCCCC-CCC----------hHHHHHHHHhCC
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPH---SVHSPDA-PAF----------PAGFLEWALSNG 81 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~---s~~~~~~-~~~----------~~~l~~~~~~~~ 81 (531)
.+.+.++|+++|+.++++|+..+.+ +. +.++|||||||||+ +.|++.. ++. ...+++.+.+++
T Consensus 30 ~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~ 108 (254)
T 3fij_A 30 QQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG 108 (254)
T ss_dssp CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC
Confidence 3568999999999999999876543 32 45799999999987 4565532 221 346788888899
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeec--------------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVG--------------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~--------------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
+||||||+|||+|+.++||++.+. ..+++|++.+++.+++++++.+++. +.++++|++.|.++|
T Consensus 109 ~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~s~l~~~~~~~--~~v~~~H~~~v~~l~ 186 (254)
T 3fij_A 109 KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNK--KLVNSLHHQFIKKLA 186 (254)
T ss_dssp CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTTSSGGGTCCTT--EEECCBCSCEESSCC
T ss_pred CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCCChHHHhcCCc--EEEEEeccchhhccC
Confidence 999999999999999999999764 1356899999999889999998887 999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEEC-CCc-EEEEecCCCCCCC--cccchhhhhheeccccc
Q 039743 148 DGFEVVARSQQGAVAAVENR-EKR-LFGLQYHPEVTHS--PEGMETLRYFLFDVCGV 200 (531)
Q Consensus 148 ~g~~vla~s~~~~v~ai~~~-~~~-i~gvQFHPE~~~~--~~g~~i~~~F~~~~~~~ 200 (531)
++++++|+++++.++|+++. +++ ++|+|||||++.+ +.|.+||+||+ ++|+.
T Consensus 187 ~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv-~~~~~ 242 (254)
T 3fij_A 187 PSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALV-DESKK 242 (254)
T ss_dssp SSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHH-HHHHS
T ss_pred CCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHH-HHHHH
Confidence 99999999999999999998 776 9999999999975 57899999998 87764
No 13
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.97 E-value=4.2e-32 Score=298.11 Aligned_cols=185 Identities=16% Similarity=0.171 Sum_probs=158.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~~iP 83 (531)
++|+|+|+|++|+++++++++++|+++++++++.+.+ ..++|||||||||+++++...+|+. .++++.+.+.++|
T Consensus 447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~---~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iP 523 (645)
T 3r75_A 447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVD---LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKP 523 (645)
T ss_dssp CEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCC---GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCccc---ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999999999999999876532 3578999999999999887655654 3677888888999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~a 163 (531)
|||||+|||+|+.++||+|.+...+++|+.......+++++.+++.. +.++++|.+.+..+|++++++|.+++|.++|
T Consensus 524 iLGIClG~QlLa~alGG~V~~~~~~~~G~~~~i~~~~~~l~~~~~~~--~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~A 601 (645)
T 3r75_A 524 FMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNT--YVAQTVRDEMDVDGVGTVAISRDPRTGEVHA 601 (645)
T ss_dssp EEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEE--EEEBCSCSEEEETTTEEEEEEECTTTCBEEE
T ss_pred EEEECHHHHHHHHHhCCEEEcCCCcccccceEEeeecCcceecCCCc--EEEEEehhhccccCCCCeEEEEEcCCCcEEE
Confidence 99999999999999999999988788887654333456777777766 8888888776667999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++. ++||+|||||+.+++.|.+||+||+ +.|
T Consensus 602 i~~~--~~~GVQFHPE~~~t~~G~~Ll~nFl-~~~ 633 (645)
T 3r75_A 602 LRGP--TFSSMQFHAESVLTVDGPRILGEAI-THA 633 (645)
T ss_dssp EEET--TEEEESSBTTSTTCTTHHHHHHHHH-HHH
T ss_pred EEcC--CEEEEEeCCeecCCcchHHHHHHHH-HHH
Confidence 9985 4799999999999999999999998 443
No 14
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.97 E-value=1.4e-33 Score=270.71 Aligned_cols=182 Identities=19% Similarity=0.291 Sum_probs=135.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~~~iPv 84 (531)
++|+|||||++|.+++.++|+++|++++++. +.+++ .++||||||||.++.... ..+ ...+++.+.+.++||
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~---~~~~l--~~~D~lilPG~g~~~~~~--~~~~~~~~i~~~~~~~~Pv 75 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISR---DPQVV--LAADKLFLPGVGTASEAM--KNLTERDLIELVKRVEKPL 75 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEEC---CHHHH--HHCSEEEECCCSCHHHHH--HHHHHTTCHHHHHHCCSCE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEEC---CHHHH--hCCCEEEECCCCCHHHHH--HHHHhcChHHHHHHcCCCE
Confidence 3599999999999999999999999999864 33444 457999999865421100 000 012355566779999
Q ss_pred EEeeHHHHHHHHHcCCEEeecC----------------------cccceeeeEEEecCCccccCCCCCceEEEEeeccCc
Q 039743 85 LGICYGLQLMVQKLDGVVKVGE----------------------KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDE 142 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~----------------------~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~ 142 (531)
||||+|||+|+.++|+.+.+.. ..+.++..+.....++++++++.. ..+|++|++.
T Consensus 76 lGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~H~~~ 153 (211)
T 4gud_A 76 LGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEPD--AYFYFVHSFA 153 (211)
T ss_dssp EEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCTT--CCEEEEESEE
T ss_pred EEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCCC--cEEEEEeeEE
Confidence 9999999999999988766432 124556666666778899999988 8999999987
Q ss_pred cccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 143 AVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 143 v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
+ |++..++|.++++...++.+.++++||+|||||++ ++.|.+||+||+ ++|+.+
T Consensus 154 v---~~~~~~~a~~~~g~~~~~~v~~~~v~GvQFHPE~s-~~~G~~ll~nFl-~~~ge~ 207 (211)
T 4gud_A 154 M---PVGDYTIAQCEYGQPFSAAIQAGNYYGVQFHPERS-SKAGARLIQNFL-ELRGEN 207 (211)
T ss_dssp C---CCCTTEEEEEESSSEEEEEEEETTEEEESSCGGGS-HHHHHHHHHHHH-HC----
T ss_pred e---CCCCeEEEEecCCCeEEEEEeCCCEEEEEccCEec-CccHHHHHHHHH-HHhccc
Confidence 4 67788899998886655555568999999999986 578999999998 888744
No 15
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.97 E-value=3e-31 Score=260.04 Aligned_cols=182 Identities=20% Similarity=0.182 Sum_probs=149.1
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhCC
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~~ 81 (531)
++|+||+. ......++.+++++.|..++++....... .....++|||||||||++++++ .+++. .++++.+.+.+
T Consensus 4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~-~~~~~~~~~~i~~~~~~~ 82 (250)
T 3m3p_A 4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDD-LPWMPTLLALIRDAVAQR 82 (250)
T ss_dssp CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSC-CTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCccccc-chHHHHHHHHHHHHHHcC
Confidence 46899964 44667889999999999999987543210 0013578999999999998875 56653 35677777789
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCC
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQ 158 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~ 158 (531)
+|+||||+|||+|+.++||+|.+.+.+++||..++++.. +++| ++++. +.++++|+|.+ ++|++++++|++++
T Consensus 83 ~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~~~v~~~~~~~~~~l~-g~~~~--~~v~~~H~~~v-~lp~~~~vlA~s~~ 158 (250)
T 3m3p_A 83 VPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVRAWPQHVPQALEWL-GTWDE--LELFEWHYQTF-SIPPGAVHILRSEH 158 (250)
T ss_dssp CCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEECSSHHHHHHH-SCSSC--EEEEEEEEEEE-CCCTTEEEEEEETT
T ss_pred CCEEEECHHHHHHHHHhCCEEEeCCCCceeeEEEEEecCCCCcccc-cCCCc--cEEEEEcccee-ecCCCCEEEEEeCC
Confidence 999999999999999999999999889999999998754 5788 78887 99999999998 89999999999999
Q ss_pred CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 159 GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 159 ~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+++|+++.+ ++||+|||||+++ ..+..++++|-
T Consensus 159 ~~~~a~~~~~-~~~GvQfHPE~~~-~~~~~~l~~~~ 192 (250)
T 3m3p_A 159 CANQAYVLDD-LHIGFQCHIEMQA-HMVREWCSISP 192 (250)
T ss_dssp EEEEEEEETT-TEEEESSCTTCCH-HHHHHHHHHCG
T ss_pred CCEEEEEECC-eeEEEEeCCcCCH-HHHHHHHHhhH
Confidence 9999999864 6999999999986 34455555553
No 16
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.97 E-value=1.3e-30 Score=268.38 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=144.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|+|||.++ ++.++|+++|++++++|++.+.+++...++|||||||||+++.+. ....++++.+.++++|||
T Consensus 191 ~~V~viD~G~k~--ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~---~~~~~~Ir~~~~~~~PIL 265 (379)
T 1a9x_B 191 FHVVAYDFGAKR--NILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC---DYAITAIQKFLETDIPVF 265 (379)
T ss_dssp EEEEEEESSCCH--HHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC---HHHHHHHHHHTTSCCCEE
T ss_pred CEEEEEECCChH--HHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHH---HHHHHHHHHHHHcCCCEE
Confidence 479999999874 599999999999999999887777655689999999999976532 223467788888899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc--CCCCcEEEEEe-CCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV--LPDGFEVVARS-QQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~--lp~g~~vla~s-~~~~v~ 162 (531)
|||+|||+|+.++||++.+.+.++.|+.. ++. .++....+.++++|++.|.. +|+++++++.+ +++.++
T Consensus 266 GIClG~QLLa~A~GG~v~k~~~gh~g~n~-------pv~-~~~~g~v~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ie 337 (379)
T 1a9x_B 266 GICLGHQLLALASGAKTVKMKFGHHGGNH-------PVK-DVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQ 337 (379)
T ss_dssp EETHHHHHHHHHTTCCEEEEEEEEEEEEE-------EEE-ETTTTEEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEE
T ss_pred EECchHHHHHHHhCcEEEecccccccCce-------eeE-ecCCCcEEEEecCccceEecccCCCCeEEEEEeCCCCcEE
Confidence 99999999999999999997544444321 111 12222224567899999975 99999999998 788999
Q ss_pred EEEECCCcEEEEecCCCCCCCc-ccchhhhhheeccc
Q 039743 163 AVENREKRLFGLQYHPEVTHSP-EGMETLRYFLFDVC 198 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~~~~~ 198 (531)
|+++.++++||+|||||.++++ ++..||++|+ +.|
T Consensus 338 ai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl-~~~ 373 (379)
T 1a9x_B 338 GIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFI-ELI 373 (379)
T ss_dssp EEEESSSSEEEESSCTTCSSSCSTTTHHHHHHH-HHH
T ss_pred EEEECCCCEEEEEeCCcCCCCcccHHHHHHHHH-HHH
Confidence 9999889999999999999876 5789999998 544
No 17
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.97 E-value=1.8e-30 Score=253.43 Aligned_cols=184 Identities=20% Similarity=0.159 Sum_probs=151.9
Q ss_pred EEEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCC--hhccccCCCCEEEEcCCCCCCCC--CCCCCCh----HHHHHHH
Q 039743 7 LVLILDYG-SQYTHLITRRIRSLSILSLCLSGTCS--LDDITAKNPRVVILSGGPHSVHS--PDAPAFP----AGFLEWA 77 (531)
Q Consensus 7 ~I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~--~~~~~~~~~dgiIlsGGp~s~~~--~~~~~~~----~~l~~~~ 77 (531)
+|+||... ......+.+++++.|+.+.+++.... ..+ ...++|||||+|||+++++ .+.+|+. .++++.+
T Consensus 2 ~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (236)
T 3l7n_A 2 RIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKA 80 (236)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHHH
Confidence 68888542 22345789999999999998875322 111 1357899999999999653 3457773 4678888
Q ss_pred HhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEec---CCccccCCCCCceEEEEeeccCccccCCCCcEEEE
Q 039743 78 LSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVER---SSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVA 154 (531)
Q Consensus 78 ~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~---~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla 154 (531)
.++++||||||+|||+|+.++||+|.+.+.+++|+.+++++. .+++|+++++. +.++++|++. ..+|++++++|
T Consensus 81 ~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~~~v~~~~~~~~~~l~~~~~~~--~~v~~~H~~~-~~lp~~~~vla 157 (236)
T 3l7n_A 81 AKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYLISLTEAGKMDSYLSDFSDD--LLVGHWHGDM-PGLPDKAQVLA 157 (236)
T ss_dssp HHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEEEEEEECTTGGGCGGGTTSCSE--EEEEEEEEEE-CCCCTTCEEEE
T ss_pred HHcCCCEEEEchHHHHHHHHhCCEEecCCCceeeeEEEEEccCcccChHHhcCCCC--cEEEEecCCc-ccCCChheEEE
Confidence 888999999999999999999999999988899999999876 46899999887 9999999987 78999999999
Q ss_pred EeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 155 RSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 155 ~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
++++|.++|+++. +++||+|||||++ ..++++|+ +.++..
T Consensus 158 ~s~~~~~~a~~~~-~~v~gvQfHPE~~-----~~~~~~~~-~~~~~~ 197 (236)
T 3l7n_A 158 ISQGCPRQIIKFG-PKQYAFQCHLEFT-----PELVAALI-AQEDDL 197 (236)
T ss_dssp ECSSCSCSEEEEE-TTEEEESSBSSCC-----HHHHHHHH-HHCSCH
T ss_pred ECCCCCEEEEEEC-CCEEEEEeCCCCC-----HHHHHHHH-Hhhhhh
Confidence 9999999999975 5899999999998 46999998 666543
No 18
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.97 E-value=6.6e-30 Score=249.76 Aligned_cols=177 Identities=22% Similarity=0.260 Sum_probs=148.5
Q ss_pred EEEEE-eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCC-CCCC--hHHHHHHHHhC
Q 039743 7 LVLIL-DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPD-APAF--PAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il-D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~-~~~~--~~~l~~~~~~~ 80 (531)
+|+|| .+...+...+.+++++.|+.+.+++.+.. +.+. ..++|||||||||.+++++. .+++ ..++++.+.++
T Consensus 14 ~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~ 92 (239)
T 1o1y_A 14 RVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKK 92 (239)
T ss_dssp EEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHC
Confidence 67777 44566677899999999999988876431 2221 35789999999999888764 4443 34677878788
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCc-ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEK-QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQG 159 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~ 159 (531)
++|+||||+|||+|+.++||+|.+... +++|+..++...++++|+++++. +.++++|++.+ ++|++++++|.++++
T Consensus 93 ~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~~v~~~~~~~l~~~~~~~--~~~~~~H~~~v-~lp~~~~vlA~s~~~ 169 (239)
T 1o1y_A 93 EIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFPDR--LRVFQWHGDTF-DLPRRATRVFTSEKY 169 (239)
T ss_dssp TCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECCCCGGGTTSCSE--EEEEEEESEEE-CCCTTCEEEEECSSC
T ss_pred CCCEEEEchhHHHHHHHcCCeEecCCCCCccccEEEEECCCCchHHhCCCC--ceeEeecCCcc-ccCCCCEEEEEcCCC
Confidence 999999999999999999999999877 89999999877778999999877 99999999987 799999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
.++|+++. . +||+|||||++. .++++|+
T Consensus 170 ~iea~~~~-~-i~gvQfHPE~~~-----~~~~~~~ 197 (239)
T 1o1y_A 170 ENQGFVYG-K-AVGLQFHIEVGA-----RTMKRWI 197 (239)
T ss_dssp SCSEEEET-T-EEEESSBSSCCH-----HHHHHHH
T ss_pred CEEEEEEC-C-EEEEEeCccCCH-----HHHHHHH
Confidence 99999985 3 999999999975 4889997
No 19
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.96 E-value=5.8e-29 Score=238.75 Aligned_cols=189 Identities=19% Similarity=0.219 Sum_probs=149.1
Q ss_pred CCEEEEEeCCCCcH-HHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-----CCCChHHHHHHHH
Q 039743 5 PELVLILDYGSQYT-HLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-----APAFPAGFLEWAL 78 (531)
Q Consensus 5 ~~~I~IlD~G~~~~-~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-----~~~~~~~l~~~~~ 78 (531)
|++|+|+|+++.+. ..+.++++++|+.+.+++.+. + ..++||||||||++...+.. ......++++.+.
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~--~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD---K--LDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAA 76 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC---C--CSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC---C--cccCCEEEECCCCchhhhhccccccccHHHHHHHHHHH
Confidence 46899999998885 788999999999999987652 2 35789999999976432211 0122346677777
Q ss_pred hCCCcEEEeeHHHHHHHHH--cCCEEeecCc--ccceeeeEEEe-cCCccccCCCCCceEEEEeeccCcccc-CCCCcEE
Q 039743 79 SNGVYVLGICYGLQLMVQK--LDGVVKVGEK--QEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHGDEAVV-LPDGFEV 152 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~--~GG~v~~~~~--~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v~~-lp~g~~v 152 (531)
++++||||||+|+|+|+.+ ++|+|.+.+. .+.|++.+++. .++++++++++...+.++++|++.... .|+++.+
T Consensus 77 ~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~~~~~l~~~~~~~~~~~~~~~H~~~s~~~~~~~~~~ 156 (213)
T 3d54_D 77 ERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFGRYVKIDDVNVV 156 (213)
T ss_dssp HHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECCCSSTTSTTSCTTCEEEEECCBSSCEEECSSCCEEE
T ss_pred HCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCCCCCceeeccCCCCEEEEEeecCceEEEecCCCcEE
Confidence 7899999999999999999 9999988753 37899999987 678899998763236777799552122 2588999
Q ss_pred EEEeCC-----CcEEEEEECCCcEEEEecCCCCCC-----Ccccchhhhhheecccc
Q 039743 153 VARSQQ-----GAVAAVENREKRLFGLQYHPEVTH-----SPEGMETLRYFLFDVCG 199 (531)
Q Consensus 153 la~s~~-----~~v~ai~~~~~~i~gvQFHPE~~~-----~~~g~~i~~~F~~~~~~ 199 (531)
+|.+++ +.++|++++++++||+|||||++. ++.|.+||+||+ +.|+
T Consensus 157 ~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~-~~~~ 212 (213)
T 3d54_D 157 LRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSIL-NYLK 212 (213)
T ss_dssp EEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHH-HHCC
T ss_pred EEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHH-HHhh
Confidence 999876 589999987889999999999987 578999999998 6653
No 20
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.1e-29 Score=236.96 Aligned_cols=172 Identities=19% Similarity=0.302 Sum_probs=130.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||+.++|.. +.++|+++|+.+.+++.+ ++ ..++||||||||+++++++..+ ...+++...++++|+|
T Consensus 1 m~i~vl~~~g~~~~-~~~~l~~~G~~~~~~~~~---~~--~~~~dglil~GG~~~~~~~~~~--~~~~~~~i~~~~~Pil 72 (186)
T 2ywj_A 1 MIIGVLAIQGDVEE-HEEAIKKAGYEAKKVKRV---ED--LEGIDALIIPGGESTAIGKLMK--KYGLLEKIKNSNLPIL 72 (186)
T ss_dssp CEEEEECSSSCCHH-HHHHHHHTTSEEEEECSG---GG--GTTCSEEEECCSCHHHHHHHHH--HTTHHHHHHTCCCCEE
T ss_pred CEEEEEecCcchHH-HHHHHHHCCCEEEEECCh---HH--hccCCEEEECCCCchhhhhhhh--ccCHHHHHHhcCCcEE
Confidence 36999999877865 569999999999888742 22 3568999999999866533110 1123444447799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccC-CCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVL-PDGFEVV 153 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~l-p~g~~vl 153 (531)
|||+|||+|+.++||++. ++|+.+.++... +.++.++ .. +.++++|++.|.++ |++++++
T Consensus 73 GIC~G~Qll~~~~gg~~~-----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~H~~~v~~l~~~~~~v~ 144 (186)
T 2ywj_A 73 GTCAGMVLLSKGTGINQI-----LLELMDITVKRNAYGRQVDSFEKEIEFKDL-GK--VYGVFIRAPVVDKILSDDVEVI 144 (186)
T ss_dssp EETHHHHHHSSCCSSCCC-----CCCCSSEEEETTTTCSSSCCEEEEEEETTT-EE--EEEEESSCCEEEEECCTTCEEE
T ss_pred EECHHHHHHHHHhCCCcC-----ccCCCceeEEeccCCCcccceecccccccC-Cc--EEEEEEecceeeecCCCCeEEE
Confidence 999999999999999853 244444333211 1345555 44 88999999999889 9999999
Q ss_pred EEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 154 ARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 154 a~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
|++ ++.++|+++ +++||+|||||+++ .|.++|+||+ +.|+
T Consensus 145 a~s-d~~~~a~~~--~~~~gvQfHPE~~~--~g~~l~~~F~-~~~~ 184 (186)
T 2ywj_A 145 ARD-GDKIVGVKQ--GKYMALSFHPELSE--DGYKVYKYFV-ENCV 184 (186)
T ss_dssp EEE-TTEEEEEEE--TTEEEESSCGGGST--THHHHHHHHH-HHHT
T ss_pred EEE-CCEEEEEee--CCEEEEECCCCcCC--chhHHHHHHH-HHHh
Confidence 999 677999996 47999999999886 3899999998 6654
No 21
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.95 E-value=5.9e-29 Score=236.76 Aligned_cols=173 Identities=18% Similarity=0.271 Sum_probs=131.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCC-----CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC----ChHHHHHH
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLS-----ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA----FPAGFLEW 76 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G-----~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~----~~~~l~~~ 76 (531)
++|+|||||+++.+++.++|+++| +++++++.+.+ .++|||||||| ++ +.+..++ ...++++.
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~------~~~dglilpG~-g~-~~~~~~~l~~~~~~~~i~~ 72 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN------DLYDLLFIPGV-GH-FGEGMRRLRENDLIDFVRK 72 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS------SCCSEEEECCC-SC-SHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc------cCCCEEEECCC-Cc-HHHHHHHHHhhCHHHHHHH
Confidence 369999999989899999999999 89998875321 46899999885 32 2211111 13466777
Q ss_pred HHhCCCcEEEeeHHHHHHHHHcC------------CEEeecC---cccceeeeEEEecCCccccCCCCCceEEEEeeccC
Q 039743 77 ALSNGVYVLGICYGLQLMVQKLD------------GVVKVGE---KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGD 141 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~Qlla~~~G------------G~v~~~~---~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~ 141 (531)
+.++++||||||+|||+|+.++| |++.+.. .++.|++.+.....+ +. +.++++|++
T Consensus 73 ~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g~~~l~~~~~~-------~~--~~v~~~H~~ 143 (201)
T 1gpw_B 73 HVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTF-------PN--GYYYFVHTY 143 (201)
T ss_dssp HHHTTCEEEEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEEEEEEEESSSS-------CC--EEEEEEESE
T ss_pred HHHcCCeEEEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCcccceeeEeccCC-------CC--CeEEEECcc
Confidence 77889999999999999999996 4454442 234555555432111 35 899999999
Q ss_pred ccccCCCCcEEEEEeCC-C-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccc
Q 039743 142 EAVVLPDGFEVVARSQQ-G-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGV 200 (531)
Q Consensus 142 ~v~~lp~g~~vla~s~~-~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~ 200 (531)
.|..+ +++++|++++ + .++|+++.+ ++||+|||||++ ++.|.++|+||+ +.|+.
T Consensus 144 ~v~~~--~~~vla~s~~~g~~~~a~~~~~-~i~gvQfHPE~~-~~~~~~l~~~f~-~~~~~ 199 (201)
T 1gpw_B 144 RAVCE--EEHVLGTTEYDGEIFPSAVRKG-RILGFQFHPEKS-SKIGRKLLEKVI-ECSLS 199 (201)
T ss_dssp EEEEC--GGGEEEEEEETTEEEEEEEEET-TEEEESSCGGGS-HHHHHHHHHHHH-HHSSC
T ss_pred eeccC--CCEEEEEEccCCceEEEEEECC-CEEEEECCCccc-CHhHHHHHHHHH-HHhhc
Confidence 99765 7999999876 4 899999754 899999999999 578999999998 66643
No 22
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.95 E-value=3.1e-29 Score=251.39 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=140.6
Q ss_pred CEEEEE-eC-CCCc-HHHHHHHHHHCCCE----EEEEeCCC----------Chhc---c--ccCCCCEEEEcCCCCCCCC
Q 039743 6 ELVLIL-DY-GSQY-THLITRRIRSLSIL----SLCLSGTC----------SLDD---I--TAKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 6 ~~I~Il-D~-G~~~-~~~i~r~l~~~G~~----~~v~~~~~----------~~~~---~--~~~~~dgiIlsGGp~s~~~ 63 (531)
.+|+|| || |.++ ..++.++|+++|++ +++...+. +.++ . ...++||||||||+++...
T Consensus 26 ~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~~~~ 105 (289)
T 2v4u_A 26 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIRGT 105 (289)
T ss_dssp EEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSSTTH
T ss_pred eEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCchhH
Confidence 369999 99 9988 77899999988753 34443322 1111 0 1346899999999875211
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEee---cC--------------------------cccceeee
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV---GE--------------------------KQEYGRME 114 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~---~~--------------------------~~e~G~~~ 114 (531)
....++++.+.++++||||||+|||+|+.++||+|.. .. ..++|++.
T Consensus 106 ----~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~~g~~~ 181 (289)
T 2v4u_A 106 ----LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRR 181 (289)
T ss_dssp ----HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccccceEE
Confidence 1134677777788999999999999999999998841 10 11256788
Q ss_pred EEEe-cCCccccCCCCCceEEEEeecc-------CccccCC-CCcEEEEEeCCCc-EEEEEECCCcEE-EEecCCCCCCC
Q 039743 115 ILVE-RSSGIFGNKKVGHHQVVWMSHG-------DEAVVLP-DGFEVVARSQQGA-VAAVENREKRLF-GLQYHPEVTHS 183 (531)
Q Consensus 115 v~~~-~~~~l~~~~~~~~~~~v~~~H~-------~~v~~lp-~g~~vla~s~~~~-v~ai~~~~~~i~-gvQFHPE~~~~ 183 (531)
+++. +++++++.++.. ..+++.|+ +.+..+| +|++++|.++++. ++||++.+++++ |+|||||++.+
T Consensus 182 v~~~~~~s~l~~~~~~~--~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQfHPE~~~~ 259 (289)
T 2v4u_A 182 TVFKTENSILRKLYGDV--PFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSR 259 (289)
T ss_dssp EEESCSCCHHHHHTTSC--SEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESSBGGGGCB
T ss_pred EEEecCCCHHHHhcCCC--ceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEECCCCCCCC
Confidence 8886 567777777664 46666665 7778899 9999999999997 999999877755 99999999876
Q ss_pred c-ccchhhhhheeccccccc
Q 039743 184 P-EGMETLRYFLFDVCGVNA 202 (531)
Q Consensus 184 ~-~g~~i~~~F~~~~~~~~~ 202 (531)
+ .+..+|++|+...+++..
T Consensus 260 ~~~~~~lf~~Fv~~~~~~~~ 279 (289)
T 2v4u_A 260 PMKPSPPYLGLLLAATGNLN 279 (289)
T ss_dssp TTBCCHHHHHHHHHHHTCHH
T ss_pred CCchHHHHHHHHHHHHhhhh
Confidence 5 478999999944433333
No 23
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.95 E-value=7.7e-29 Score=251.53 Aligned_cols=196 Identities=16% Similarity=0.216 Sum_probs=141.3
Q ss_pred CEEEEEeC-CC---------Cc-HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLILDY-GS---------QY-THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~-G~---------~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
+.|+|+.. +. .| ..+++++|+++|+.+++++.+.+.+++. ..++||||||||++++.+.........
T Consensus 31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~ 110 (315)
T 1l9x_A 31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKI 110 (315)
T ss_dssp CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHH
T ss_pred CEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHH
Confidence 57999833 21 22 3468999999999999999876655543 347899999999987643211111234
Q ss_pred HHHHHHhC-----CCcEEEeeHHHHHHHHHcCCEEeecCccccee-eeEEEe---cCCccccCCCCCc------eEEEEe
Q 039743 73 FLEWALSN-----GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGR-MEILVE---RSSGIFGNKKVGH------HQVVWM 137 (531)
Q Consensus 73 l~~~~~~~-----~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~---~~~~l~~~~~~~~------~~~v~~ 137 (531)
+++.+++. ++||||||+|||+|+.++||++......++|. .+++.. .++++|+++++.. ...+++
T Consensus 111 l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~ 190 (315)
T 1l9x_A 111 FYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTAN 190 (315)
T ss_dssp HHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccccccCCCCCeeeccCCCCChHHHhcChhhhhhccccceEEE
Confidence 55555544 69999999999999999999976654445564 345544 4568998886420 012456
Q ss_pred eccCccc--------cCCCCcEEEEEeCCCcEEEE---EECCCcEEEEecCCCCCCCc---------------ccchhhh
Q 039743 138 SHGDEAV--------VLPDGFEVVARSQQGAVAAV---ENREKRLFGLQYHPEVTHSP---------------EGMETLR 191 (531)
Q Consensus 138 ~H~~~v~--------~lp~g~~vla~s~~~~v~ai---~~~~~~i~gvQFHPE~~~~~---------------~g~~i~~ 191 (531)
+|++.|. .+|++++++|.++++.++++ +++++++||+|||||+.+++ .|..+|+
T Consensus 191 ~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~ 270 (315)
T 1l9x_A 191 FHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAE 270 (315)
T ss_dssp EEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHH
Confidence 9999997 78999999999999876665 66777899999999986421 3669999
Q ss_pred hheeccccccc
Q 039743 192 YFLFDVCGVNA 202 (531)
Q Consensus 192 ~F~~~~~~~~~ 202 (531)
+|+ +.|+.+.
T Consensus 271 ~Fv-~~a~~~~ 280 (315)
T 1l9x_A 271 FFV-NEARKNN 280 (315)
T ss_dssp HHH-HHHTTSC
T ss_pred HHH-HHHHhcc
Confidence 998 8886544
No 24
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.95 E-value=1.4e-27 Score=227.04 Aligned_cols=176 Identities=19% Similarity=0.283 Sum_probs=135.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCC-C-CCCCCCCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS-V-HSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s-~-~~~~~~~~~~~l~~~~~~~~iP 83 (531)
++|+|+|+|.++..++.++|+++|+++++++.+. ++ .++||||||||... . ...-......++++.+.++++|
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~---~l--~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~P 77 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPK---AH--EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLP 77 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTT---SC--SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChH---Hc--ccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCe
Confidence 4799999999999999999999999999987432 22 46899999884331 1 0110112245677777788999
Q ss_pred EEEeeHHHHHHHHH---cC---------CEEeecC---cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCC
Q 039743 84 VLGICYGLQLMVQK---LD---------GVVKVGE---KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD 148 (531)
Q Consensus 84 vLGIC~G~Qlla~~---~G---------G~v~~~~---~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~ 148 (531)
|||||+|||+|+.+ +| |+|.+.. .+++|++.+++++ + +.++++ +.++++|++.+ .+++
T Consensus 78 ilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~-~--l~~~~~---~~~~~~Hs~~~-~~~~ 150 (200)
T 1ka9_H 78 FLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGG-A--FAPLTG---RHFYFANSYYG-PLTP 150 (200)
T ss_dssp EEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECG-G--GGGGTT---CEEEEEESEEC-CCCT
T ss_pred EEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEEEech-h--hhcCCC---CCEEEeccccc-CCCC
Confidence 99999999999999 68 8888764 4689999998877 4 666654 57899999998 6655
Q ss_pred CcEEEEEeCC-C-cEEEEEECCCcEEEEecCCCCCCCcccchhh---hhheeccc
Q 039743 149 GFEVVARSQQ-G-AVAAVENREKRLFGLQYHPEVTHSPEGMETL---RYFLFDVC 198 (531)
Q Consensus 149 g~~vla~s~~-~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~---~~F~~~~~ 198 (531)
+ .+ |++++ + .++++.+.+ ++||+|||||++. +.|.+|| +||+ +.|
T Consensus 151 ~-~v-a~s~~~g~~~~~~~~~~-~i~gvQfHPE~~~-~~g~~l~~~~~~F~-~~~ 200 (200)
T 1ka9_H 151 Y-SL-GKGEYEGTPFTALLAKE-NLLAPQFHPEKSG-KAGLAFLALARRYF-EVL 200 (200)
T ss_dssp T-CC-EEEEETTEEEEEEEECS-SEEEESSCTTSSH-HHHHHHHHHHHHHC----
T ss_pred C-cE-EEEEeCCeEEEEEEeeC-CEEEEecCCCcCc-cchhHHHHHHHHHH-hhC
Confidence 4 66 88876 4 788888754 8999999999997 7899999 9998 543
No 25
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.94 E-value=3.7e-27 Score=223.39 Aligned_cols=175 Identities=17% Similarity=0.260 Sum_probs=130.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCCc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGVY 83 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~iP 83 (531)
|++|+|+|++++|...+ ++++++|+.+.+++.. +++ .++||||||||+.++++.... .-..++++.+.++++|
T Consensus 1 ~m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~---~~l--~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 74 (196)
T 2nv0_A 1 MLTIGVLGLQGAVREHI-HAIEACGAAGLVVKRP---EQL--NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP 74 (196)
T ss_dssp CCEEEEECSSSCCHHHH-HHHHHTTCEEEEECSG---GGG--GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CcEEEEEEccCCcHHHH-HHHHHCCCEEEEeCCh---HHH--hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence 36899999988888755 9999999998887642 233 468999999998765542100 1114667777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCcEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEV 152 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~v 152 (531)
+||||+|||+|+.++||++.+ +.|+.++++... +..+.+++.. +.++++|++.+..+|+++++
T Consensus 75 ilgIC~G~q~l~~~~gg~~~~----~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~--~~~~~~h~~~v~~~~~~~~v 148 (196)
T 2nv0_A 75 MFGTCAGLIILAKEIAGSDNP----HLGLLNVVVERNSFGRQVDSFEADLTIKGLDEP--FTGVFIRAPHILEAGENVEV 148 (196)
T ss_dssp EEEETHHHHHHSBCCC----C----CCCCSCEEEECCCSCTTTSEEEEEECCTTCSSC--EEEEEESCCEEEEECTTCEE
T ss_pred EEEECHHHHHHHHHhcCCCCC----cccCCceeEeccCCCcccccccCCcccccCCCc--eEEEEEecceecccCCCcEE
Confidence 999999999999999997632 344444433211 2345556656 89999999998889999999
Q ss_pred EEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 153 VARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 153 la~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+|.+ ++.++|+++ +++||+|||||++.+ .+++++|+ +.|
T Consensus 149 ~a~~-d~~~~a~~~--~~~~gvQfHPE~~~~---~~l~~~fl-~~~ 187 (196)
T 2nv0_A 149 LSEH-NGRIVAAKQ--GQFLGCSFHPELTED---HRVTQLFV-EMV 187 (196)
T ss_dssp EEEE-TTEEEEEEE--TTEEEESSCTTSSSC---CHHHHHHH-HHH
T ss_pred EEEE-CCEEEEEEE--CCEEEEEECCccCCc---hHHHHHHH-HHH
Confidence 9999 567789986 589999999999864 48999998 555
No 26
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.93 E-value=4.1e-27 Score=234.21 Aligned_cols=187 Identities=19% Similarity=0.198 Sum_probs=132.9
Q ss_pred CEEEEE-eCC---CCcHHHHHHHHH----HCCCEEEEEeCCCCh-hc-----c--ccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 6 ELVLIL-DYG---SQYTHLITRRIR----SLSILSLCLSGTCSL-DD-----I--TAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 6 ~~I~Il-D~G---~~~~~~i~r~l~----~~G~~~~v~~~~~~~-~~-----~--~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
.+|+|+ ||| ..+-.++.++|+ +.|+.+.+++.+... .. + ...++|||||||||++.... -
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~----~ 84 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNRGVD----G 84 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTTTHH----H
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCcCch----h
Confidence 479999 995 334345555554 456667777654321 10 1 13578999999998652111 1
Q ss_pred hHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEee-----cC-------c----------------ccceeeeEEEe-cC
Q 039743 70 PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV-----GE-------K----------------QEYGRMEILVE-RS 120 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~-----~~-------~----------------~e~G~~~v~~~-~~ 120 (531)
...+++.+.++++|+||||+|||+|+.++||+|.. .. . .++||+.+++. ++
T Consensus 85 ~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~~~~ 164 (273)
T 2w7t_A 85 KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIVEKS 164 (273)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEECCTT
T ss_pred HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEecCC
Confidence 34677777778999999999999999999998841 10 0 14688888886 36
Q ss_pred CccccCCCCCceEEEEe--eccCcc-----ccC-CCCcEEEEEeCC----C-cEEEEEECCCc-EEEEecCCCCCCCcc-
Q 039743 121 SGIFGNKKVGHHQVVWM--SHGDEA-----VVL-PDGFEVVARSQQ----G-AVAAVENREKR-LFGLQYHPEVTHSPE- 185 (531)
Q Consensus 121 ~~l~~~~~~~~~~~v~~--~H~~~v-----~~l-p~g~~vla~s~~----~-~v~ai~~~~~~-i~gvQFHPE~~~~~~- 185 (531)
+++++.+++. ..+++ .|++.| ..+ |++++++|++++ + .++|+++.+++ ++|+|||||++.++.
T Consensus 165 s~l~~~~~~~--~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~ 242 (273)
T 2w7t_A 165 SIMAKIYSKS--NIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMD 242 (273)
T ss_dssp SHHHHHTTTC--SEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTB
T ss_pred cHHHHHhCCC--ceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCc
Confidence 7777766655 45655 556555 356 899999999988 5 89999998777 559999999998664
Q ss_pred cchhhhhheecccc
Q 039743 186 GMETLRYFLFDVCG 199 (531)
Q Consensus 186 g~~i~~~F~~~~~~ 199 (531)
+.+||+||+ +.|+
T Consensus 243 ~~~l~~~Fv-~~~~ 255 (273)
T 2w7t_A 243 PAPTYLSFM-AAAA 255 (273)
T ss_dssp CCHHHHHHH-HHHH
T ss_pred hHHHHHHHH-HHHH
Confidence 599999998 5554
No 27
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=2.3e-26 Score=221.79 Aligned_cols=175 Identities=21% Similarity=0.288 Sum_probs=131.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC-CCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA-PAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~-~~~~~~l~~~~~~~~iPv 84 (531)
++|+|+|+.++|.. +.++|+++|+.+.+++.. ++ ..++||||||||+.+.++... .....++++.+.++++||
T Consensus 24 ~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~---~~--l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 97 (219)
T 1q7r_A 24 MKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS---EQ--LEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPM 97 (219)
T ss_dssp CEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG---GG--GTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCE
T ss_pred CEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH---HH--HhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeE
Confidence 57999999887875 468999999999988753 23 357899999999876543210 011246777888889999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCcEEE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVV 153 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vl 153 (531)
||||+|||+|+.++||++.+ ..|+.++++... ...+.+++.. +.++++|++.+..+|++++++
T Consensus 98 lGIC~G~QlL~~~~gg~~~~----~lg~~~~~~~~~~~g~~~~~~~~~~~~~g~g~~--~~~~~~h~~~v~~l~~~~~v~ 171 (219)
T 1q7r_A 98 FGTCAGLILLAKRIVGYDEP----HLGLMDITVERNSFGRQRESFEAELSIKGVGDG--FVGVFIRAPHIVEAGDGVDVL 171 (219)
T ss_dssp EEETTHHHHHEEEEESSCCC----CCCCEEEEEECHHHHCCCCCEEEEEEETTTEEE--EEEEESSCCEEEEECTTCEEE
T ss_pred EEECHHHHHHHHHhCCCCcC----CcCccceEEEecCCCccccceecCcccCCCCCc--eEEEEEecceeeccCCCcEEE
Confidence 99999999999999997632 334433332210 1223455445 889999999998899999999
Q ss_pred EEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 154 ARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 154 a~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
|.+ ++.++|+++ +++||+|||||++.+ .++|++|+ +.|+
T Consensus 172 a~s-dg~~ea~~~--~~i~GvQfHPE~~~~---~~l~~~fl-~~~~ 210 (219)
T 1q7r_A 172 ATY-NDRIVAARQ--GQFLGCSFHPELTDD---HRLMQYFL-NMVK 210 (219)
T ss_dssp EEE-TTEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHH-HHHH
T ss_pred EEc-CCEEEEEEE--CCEEEEEECcccCCC---HHHHHHHH-HHHH
Confidence 999 678899997 589999999999864 58999998 5553
No 28
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.92 E-value=4.8e-26 Score=247.58 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=138.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCC-CCCCCC-CCCChHHHHHHHHhCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPH-SVHSPD-APAFPAGFLEWALSNGV 82 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~-s~~~~~-~~~~~~~l~~~~~~~~i 82 (531)
|++|+|+|||.++.+++.++|+++|+.+++++...+ . ...++||||||||.. +..... ......++++.+.++++
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~--~-~l~~~DglILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~ 80 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD--F-NISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGK 80 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG--C-CSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc--c-ccccCCEEEECCCCchHhHhhhhhhccHHHHHHHHHHcCC
Confidence 578999999988888999999999999999874322 1 135789999998533 111000 00112456777778899
Q ss_pred cEEEeeHHHHHHHHHc------------CCEEeecC-----cccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 83 YVLGICYGLQLMVQKL------------DGVVKVGE-----KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~------------GG~v~~~~-----~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|+||||+|||+|+.++ ||+|.+.+ .+++||+.+++. +++|+++++. +.++++|++.+..
T Consensus 81 PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~--~~L~~~l~~~--~~~~~vHS~~~~~ 156 (555)
T 1jvn_A 81 PIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPS--ENLFFGLDPY--KRYYFVHSFAAIL 156 (555)
T ss_dssp CEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCC--TTCCTTCCTT--SCEEEEESEECBC
T ss_pred cEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEc--CHHHhhCCCC--ceEEEEEEEEEEe
Confidence 9999999999999998 78888753 357899888765 7899998876 5778888777643
Q ss_pred C-------CCCcEEEEEeCC---CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhee
Q 039743 146 L-------PDGFEVVARSQQ---GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLF 195 (531)
Q Consensus 146 l-------p~g~~vla~s~~---~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~ 195 (531)
+ |+++.++|.++. +.++|++. +++||+|||||.++ ..|.++|+||+.
T Consensus 157 i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~--~~i~GvQFHPE~s~-~~g~~l~~~Fl~ 213 (555)
T 1jvn_A 157 NSEKKKNLENDGWKIAKAKYGSEEFIAAVNK--NNIFATQFHPEKSG-KAGLNVIENFLK 213 (555)
T ss_dssp CHHHHHHHHHTTCEEEEEEETTEEEEEEEEE--TTEEEESSBGGGSH-HHHHHHHHHHHT
T ss_pred cccccccCCCCCEEEEEEcCCCCCeEEEEEe--CCEEEEEeCcEecC-hhHHHHHHHHHh
Confidence 2 678999998873 57899984 68999999999875 578999999983
No 29
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=3e-25 Score=212.26 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=125.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~iP 83 (531)
.+|+|+||.+ +...+.++|+++|+.+.+++.. +++ .++||||||||+.+.++.. ... ..++++.+.++++|
T Consensus 21 ~~I~ii~~~~-~~~~~~~~l~~~g~~~~~~~~~---~~l--~~~d~iil~GG~~~~~~~~~~~~~-~~~~i~~~~~~g~P 93 (208)
T 2iss_D 21 MKIGVLGVQG-DVREHVEALHKLGVETLIVKLP---EQL--DMVDGLILPGGESTTMIRILKEMD-MDEKLVERINNGLP 93 (208)
T ss_dssp CEEEEECSSS-CHHHHHHHHHHTTCEEEEECSG---GGG--GGCSEEEECSSCHHHHHHHHHHTT-CHHHHHHHHHTTCC
T ss_pred cEEEEEECCC-chHHHHHHHHHCCCEEEEeCCh---HHH--hhCCEEEECCCcHHHHHhhhhhhh-HHHHHHHHHHCCCe
Confidence 5799999944 4456889999999998887643 233 4689999999976544320 011 24567777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCC-CCceEEEEeeccCccccCCCCcE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKK-VGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~-~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
+||||+|||+|+.++||... ...|+.+.++... +..+.+++ .+ +.++++|++.+..+|++++
T Consensus 94 ilGIC~G~QlL~~~~gg~~~----~~lg~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~ 167 (208)
T 2iss_D 94 VFATCAGVILLAKRIKNYSQ----EKLGVLDITVERNAYGRQVESFETFVEIPAVGKDP--FRAIFIRAPRIVETGKNVE 167 (208)
T ss_dssp EEEETHHHHHHEEEEC---C----CCCCCEEEEEETTTTCSGGGCEEEEECCGGGCSSC--EEEEESSCCEEEEECSSCE
T ss_pred EEEECHHHHHHHHHcCCCCC----CCccccceEEEecCCCcccccccCCcccccCCCCc--eEEEEEeCcccccCCCCcE
Confidence 99999999999999999532 2334333333211 12345554 34 8999999999888899999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
++|.+ ++.++|++. +++||+|||||++.+ .+++++|+ +.|
T Consensus 168 v~a~~-d~~~~a~~~--~~i~GvQfHPE~~~~---~~l~~~fl-~~~ 207 (208)
T 2iss_D 168 ILATY-DYDPVLVKE--GNILACTFHPELTDD---LRLHRYFL-EMV 207 (208)
T ss_dssp EEEEE-TTEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHH-TTC
T ss_pred EEEEE-CCEEEEEEE--CCEEEEEeCCCcCCc---HHHHHHHH-HHh
Confidence 99998 588999986 479999999999875 38999998 554
No 30
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.91 E-value=4.9e-25 Score=207.72 Aligned_cols=174 Identities=20% Similarity=0.258 Sum_probs=124.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC-CCChHHHHHHHHhCC-Cc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA-PAFPAGFLEWALSNG-VY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~-~~~~~~l~~~~~~~~-iP 83 (531)
++|+|+.+.+.+ ..+.++|+++|+.+++++... + ..++||||||||+....+.-. .....++++.+.+++ +|
T Consensus 3 p~Igi~~~~~~~-~~~~~~l~~~G~~~~~~~~~~---~--l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~P 76 (191)
T 2ywd_A 3 GVVGVLALQGDF-REHKEALKRLGIEAKEVRKKE---H--LEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLA 76 (191)
T ss_dssp CCEEEECSSSCH-HHHHHHHHTTTCCCEEECSGG---G--GTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCE
T ss_pred cEEEEEecCCch-HHHHHHHHHCCCEEEEeCChh---h--hccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCe
Confidence 579999875544 579999999999999887532 2 256899999999643211100 011245667777788 99
Q ss_pred EEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCcE
Q 039743 84 VLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
|||||+|||+|+.++|| ++.+ ..|+.+.++... ...+.++ .. +.++++|++.+..+|++++
T Consensus 77 ilGiC~G~Q~l~~~~gg~~~~~----~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~--~~~~~~Hs~~v~~l~~~~~ 149 (191)
T 2ywd_A 77 LFGTCAGAIWLAKEIVGYPEQP----RLGVLEAWVERNAFGRQVESFEEDLEVEGL-GS--FHGVFIRAPVFRRLGEGVE 149 (191)
T ss_dssp EEEETHHHHHHEEEETTCTTCC----CCCCEEEEEETTCSCCSSSEEEEEEEETTT-EE--EEEEEESCCEEEEECTTCE
T ss_pred EEEECHHHHHHHHHhCCCCCCc----cccccceEEEcCCcCCccccccccccccCC-Cc--eeEEEEcccceeccCCCcE
Confidence 99999999999999998 4321 222222222110 1123334 34 7889999999888999999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
++|.+ ++.++|+++ +++||+|||||.+.. + ++|+||+ +.|+
T Consensus 150 ~~a~~-~~~~~a~~~--~~~~gvQfHPE~~~~--~-~l~~~f~-~~~~ 190 (191)
T 2ywd_A 150 VLARL-GDLPVLVRQ--GKVLASSFHPELTED--P-RLHRYFL-ELAG 190 (191)
T ss_dssp EEEEE-TTEEEEEEE--TTEEEESSCGGGSSC--C-HHHHHHH-HHHT
T ss_pred EEEEE-CCEEEEEEE--CCEEEEEeCCCCCCC--c-HHHHHHH-HHhc
Confidence 99999 588999997 369999999998763 3 8999998 6654
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.91 E-value=3.2e-25 Score=214.93 Aligned_cols=179 Identities=16% Similarity=0.201 Sum_probs=133.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHC---CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC--Ch-HHHHHHHHh
Q 039743 6 ELVLILDYGSQYTHLITRRIRSL---SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA--FP-AGFLEWALS 79 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~---G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~--~~-~~l~~~~~~ 79 (531)
++|+|+++++.+. .+.+.|+++ |+.+.+++.. +++ .++||||||||++++++..... .. .+.++.+.+
T Consensus 4 ~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~~---~~l--~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~ 77 (227)
T 2abw_A 4 ITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRNV---HDL--GLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIH 77 (227)
T ss_dssp EEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECSH---HHH--HTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcCc---ccc--ccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5799999987765 589999999 9888777632 333 4689999999987554421111 11 356666778
Q ss_pred C-CCcEEEeeHHHHHHHHHcCCEEeecC---cccceeeeEEEecCC-----------ccccCC----CCCceEEEEeecc
Q 039743 80 N-GVYVLGICYGLQLMVQKLDGVVKVGE---KQEYGRMEILVERSS-----------GIFGNK----KVGHHQVVWMSHG 140 (531)
Q Consensus 80 ~-~iPvLGIC~G~Qlla~~~GG~v~~~~---~~e~G~~~v~~~~~~-----------~l~~~~----~~~~~~~v~~~H~ 140 (531)
+ ++||||||+|||+|++++||++.... ..++|+.++++.... ..+.++ +.. +..++.|+
T Consensus 78 ~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~--~~~~~~h~ 155 (227)
T 2abw_A 78 VLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKD--LTAACIRA 155 (227)
T ss_dssp TSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTT--CEEEEESC
T ss_pred hcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCc--eeEEEEEc
Confidence 8 99999999999999999999874432 456777666554321 112233 244 78899999
Q ss_pred CccccC-CCCcEEEEEeC-----CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 141 DEAVVL-PDGFEVVARSQ-----QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 141 ~~v~~l-p~g~~vla~s~-----~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+.|..+ |++++++|.++ ++.++|++. +++||+|||||++++ .+++++|+ +.|
T Consensus 156 ~~v~~~~~~~~~vla~~~~~~~g~~~~~a~~~--~~v~gvQfHPE~~~~---~~l~~~Fl-~~~ 213 (227)
T 2abw_A 156 PYIREILSDEVKVLATFSHESYGPNIIAAVEQ--NNCLGTVFHPELLPH---TAFQQYFY-EKV 213 (227)
T ss_dssp CEEEEECCTTCEEEEEEEETTTEEEEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHH-HHH
T ss_pred ceEeecCCCCcEEEEEcccccCCCCceEEEEE--CCEEEEEECCeeCCC---cHHHHHHH-HHH
Confidence 998887 99999999986 577889885 679999999999875 48999998 555
No 32
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.90 E-value=1.7e-24 Score=212.05 Aligned_cols=201 Identities=17% Similarity=0.240 Sum_probs=139.7
Q ss_pred ccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 206 LENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
++...+.++..|++++.. .++++|++|||+||+++++++++++|.++++++++++..+..+.+.+.+ +|+.+|++++
T Consensus 6 ~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~~~~~~~~~~a~~-~a~~lgi~~~ 84 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALR-LCADLNLEYK 84 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCSSCHHHHHHHH-HHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHH-HHHHhCCCEE
Confidence 444556777778887654 4689999999999999999999999999999999999887778777776 8999999999
Q ss_pred EEECchHHHHhhcCCC--CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc
Q 039743 284 CVDATDQFLSKLKGVI--DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~--~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik 361 (531)
++++++.+......+. ++...|.++.+.++..+..+|++.| +..+.+|+ .+|.. .|. .
T Consensus 85 ~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g------~~vl~tgn-~se~~-----~g~--------~ 144 (249)
T 3p52_A 85 IIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKN------SLVIGTSN-KSELL-----LGY--------G 144 (249)
T ss_dssp ECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTT------EEEBCCCC-HHHHH-----HTC--------S
T ss_pred EEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCC------CeEEeCCC-HHHHH-----ccc--------h
Confidence 9999876544444332 3334555666667788999999887 55555554 44432 122 3
Q ss_pred cccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 362 t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
|.++.+. .+++||.+++|+|||++|+++|+|++++.+.|+ +||. +|+.+++.|+-.++..|.++..
T Consensus 145 t~~gd~~-------~~i~PL~~l~K~eV~~la~~~gip~~i~~k~ps--a~L~---~~q~de~~lg~~y~~ld~~l~~ 210 (249)
T 3p52_A 145 TIYGDLA-------CAFNPIGSLYKSEIYALAKYLNLHENFIKKAPS--ADLW---ENQSDEADLGFSYTKIDEGLKA 210 (249)
T ss_dssp CTTTTTC-------CSEETTTTSCHHHHHHHHHHTTCCHHHHHC----------------------CCCCHHHHHHHH
T ss_pred hhhcccc-------CccccccCCcHHHHHHHHHHcCCcHHhcCCCCC--cccC---CCCCCHHHcCCCHHHHHHHHHH
Confidence 3344332 389999999999999999999999777666554 4553 5899999884488888888643
No 33
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.90 E-value=1.3e-24 Score=232.78 Aligned_cols=184 Identities=19% Similarity=0.182 Sum_probs=131.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC------hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCS------LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~------~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
++++|.+.++...+.+...+.|+.+.+.+.+.. .++. ..++|||||||||+++... -...+++++.+++
T Consensus 310 v~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~-L~~~DGIILpGGfGd~~~~----g~i~~ir~a~e~~ 384 (550)
T 1vco_A 310 VKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEA-FRDVSGILVPGGFGVRGIE----GKVRAAQYARERK 384 (550)
T ss_dssp C---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHH-TTTCSCEEECCCCSSTTHH----HHHHHHHHHHHTT
T ss_pred EEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHH-HhcCCEEEECCCCCCcchh----hhHHHHHHHHHCC
Confidence 445677766777788888888999998876542 1122 4679999999998864221 1236778888889
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCc---cc---------------------------ceeeeEEEecCCccccCCCCCc
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEK---QE---------------------------YGRMEILVERSSGIFGNKKVGH 131 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~---~e---------------------------~G~~~v~~~~~~~l~~~~~~~~ 131 (531)
+|+||||+|||+|+.++||++.+... .| +|++++.+.+++ ++..+....
T Consensus 385 iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s-~l~~iy~~~ 463 (550)
T 1vco_A 385 IPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGT-LLHRLYGKE 463 (550)
T ss_dssp CCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTS-HHHHHHCCS
T ss_pred CcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCc-hhhHhcCCc
Confidence 99999999999999999988764320 01 255566665443 332232221
Q ss_pred eEEEEeeccCccc-----cCC-CCcEEEEEeCCC------cEEEEEECCCcEE-EEecCCCCCCCcc-cchhhhhheecc
Q 039743 132 HQVVWMSHGDEAV-----VLP-DGFEVVARSQQG------AVAAVENREKRLF-GLQYHPEVTHSPE-GMETLRYFLFDV 197 (531)
Q Consensus 132 ~~~v~~~H~~~v~-----~lp-~g~~vla~s~~~------~v~ai~~~~~~i~-gvQFHPE~~~~~~-g~~i~~~F~~~~ 197 (531)
.+..++.|++.|. .++ ++++++|.++++ .++|++++++++| |+|||||+++++. |..||++|+ +.
T Consensus 464 ~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv-~a 542 (550)
T 1vco_A 464 EVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFV-EA 542 (550)
T ss_dssp EEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHH-HH
T ss_pred eeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHH-HH
Confidence 2345778888773 455 799999999874 8999999988988 9999999998774 999999998 55
Q ss_pred c
Q 039743 198 C 198 (531)
Q Consensus 198 ~ 198 (531)
|
T Consensus 543 a 543 (550)
T 1vco_A 543 A 543 (550)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.89 E-value=3.5e-24 Score=209.94 Aligned_cols=203 Identities=19% Similarity=0.250 Sum_probs=147.7
Q ss_pred ccccccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCC
Q 039743 202 AGWKLENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLH 279 (531)
Q Consensus 202 ~~w~~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lg 279 (531)
++++++..++.++..|++++.. .++++|++|||+||++++++++++.+..+ +++++++..+..+.+.+.+ +|+.+|
T Consensus 5 ~~~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~~~~~-av~~~~~~~~~~~~~~a~~-~a~~lg 82 (249)
T 3fiu_A 5 KDFSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGLPTT-ALILPSDNNQHQDMQDALE-LIEMLN 82 (249)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTSCEE-EEECCCTTSCHHHHHHHHH-HHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhCCCCE-EEEecCCCCCHHHHHHHHH-HHHHhC
Confidence 3567777888888999988743 36899999999999999999999865555 9999999877778777776 899999
Q ss_pred CcEEEEECchHHHHhhcCC---CC-cccccchh-----hHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCC
Q 039743 280 LPVTCVDATDQFLSKLKGV---ID-PETKRKII-----GKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPP 350 (531)
Q Consensus 280 i~~~vvd~~~~f~~~l~~~---~~-p~~kr~~~-----~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~ 350 (531)
++++++++++.|......+ .+ +...+..+ .+.++..+..+|++.| +..+++| |+++.. .
T Consensus 83 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g------~~vl~TG-n~sE~~-----~ 150 (249)
T 3fiu_A 83 IEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYN------RIVIGTD-NACEWY-----M 150 (249)
T ss_dssp CEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHT------EEEBCCC-CHHHHH-----H
T ss_pred CCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcC------CEEEECC-CHHHHh-----c
Confidence 9999999987654432211 11 11122222 3445667888888887 6666677 454332 1
Q ss_pred CCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHH
Q 039743 351 GTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDIL 430 (531)
Q Consensus 351 g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~ 430 (531)
|. .|.+++++ .+++||.+++|.|||++|+++|+|++++.+.|+ +||. .|+.+++.|+-.+
T Consensus 151 G~--------~t~~gd~~-------~~i~PL~~l~K~eVr~lA~~lglp~~i~~k~ps--a~L~---~~q~de~~lg~~y 210 (249)
T 3fiu_A 151 GY--------FTKFGDGA-------ADILPLVNLKKSQVFELGKYLDVPKNILDKAPS--AGLW---QGQTDEDEMGVTY 210 (249)
T ss_dssp TC--------SCTTTTTC-------CSBCTTTTCCHHHHHHHHHHTTCCHHHHHSCCC--CCSS---TTCCHHHHHTSCH
T ss_pred Cc--------hhccCCCC-------cceeecccCcHHHHHHHHHHcCCcHHHccCCCC--CccC---CCCCCHHHcCCCH
Confidence 22 44455432 399999999999999999999999766666554 4553 3899999994499
Q ss_pred hhhhHHHH
Q 039743 431 RQVDEIFI 438 (531)
Q Consensus 431 ~~~d~~~~ 438 (531)
+.+|.+|.
T Consensus 211 ~~ld~~l~ 218 (249)
T 3fiu_A 211 QEIDDFLD 218 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999953
No 35
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.88 E-value=2.1e-23 Score=207.23 Aligned_cols=209 Identities=22% Similarity=0.181 Sum_probs=140.8
Q ss_pred ccccccccccccchhhhhhhhhhccccCc---cceeeccCCCCCHHHHHHHHHHHh----------CCcEEEEEEeCCCC
Q 039743 196 DVCGVNAGWKLENVLDEEVKCIKDTVGLE---DHVICALSGGVDSTVAATLVHKAI----------GDRLHCVFVDNGLL 262 (531)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~~i~~~v~~~---~kvvvalSGGvDS~v~a~l~~k~~----------g~~v~~v~id~g~~ 262 (531)
+..++.++|+++..++..+..|++++... ++++|++|||+||+|+|+|+++++ +.+++|++++++..
T Consensus 9 ~~~~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~ 88 (275)
T 1wxi_A 9 KALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQ 88 (275)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCc
Confidence 45588899999999999999999998543 489999999999999999999986 23899999997743
Q ss_pred ChhHHHHHHHHHHHhCCC-cEEEEECchHH---HHhhcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEE
Q 039743 263 RYKERERVMDTFEKDLHL-PVTCVDATDQF---LSKLKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYL 334 (531)
Q Consensus 263 ~~~e~~~~~~~la~~lgi-~~~vvd~~~~f---~~~l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l 334 (531)
.+.+++.+ +|+.+|+ +|+++++++.+ .+.+.. .+++...+..||. +..++..+|.+.| ++
T Consensus 89 --~~~~dA~~-va~~lgi~~~~~i~i~~~~~~~~~~l~~-~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g--------~l 156 (275)
T 1wxi_A 89 --ADEQDCQD-AIAFIQPDRVLTVNIKGAVLASEQALRE-AGIELSDFVRGNEKARERMKAQYSIAGMTS--------GV 156 (275)
T ss_dssp --TTHHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHHHTT--------EE
T ss_pred --cCHHHHHH-HHHHcCCCeEEEEecHHHHHHHHHHHHh-cCCCCCCchhhhhhhhHHHHHHHHHHHHCC--------CE
Confidence 35667766 8999999 99999998544 333321 0111122344454 2335556666554 34
Q ss_pred EecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCcc
Q 039743 335 VQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLA 414 (531)
Q Consensus 335 ~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la 414 (531)
+.||. +..|. ..|+ .|.++++ ..++.||.+|+|+|||++|+++|+|.+++.+.|+ +||.
T Consensus 157 vlgTg--n~~E~--~~Gy--------~t~~gd~-------~~~~~PL~~l~K~eVr~la~~lglp~~i~~k~ps--a~L~ 215 (275)
T 1wxi_A 157 VVGTD--HAAEA--ITGF--------FTKYGDG-------GTDINPLYRLNKRQGKQLLAALACPEHLYKKAPT--ADLE 215 (275)
T ss_dssp EBCCC--CHHHH--TTTC--------SCTTTTT-------CCSBCTTTTCCHHHHHHHHHHTTCCGGGTSCC--------
T ss_pred EEECc--cHHHH--ccCc--------ccccCCC-------ccceeeccCCCHHHHHHHHHHhCCcHhhccCCCC--Cccc
Confidence 44552 22232 1233 3444432 2489999999999999999999999777777654 5687
Q ss_pred ccccCCCCcchHHHHHhhhhHHH
Q 039743 415 VRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 415 ~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
.+.+|+.|++.|+-.++++|.++
T Consensus 216 ~~~~~q~De~~lg~~Y~~lD~~l 238 (275)
T 1wxi_A 216 DDRPSLPDEVALGVTYDNIDDYL 238 (275)
T ss_dssp -------CHHHHSSCHHHHHHHH
T ss_pred CCCCCCCCHHHhCCCHHHHHHHH
Confidence 77789999999944899999985
No 36
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.88 E-value=1.9e-22 Score=201.92 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=133.3
Q ss_pred CEEEEEeCCC---CcHHHHHHHHHHCCCEEEEEeCCC------------------ChhccccCCCCEEEEcCCCCCCCC-
Q 039743 6 ELVLILDYGS---QYTHLITRRIRSLSILSLCLSGTC------------------SLDDITAKNPRVVILSGGPHSVHS- 63 (531)
Q Consensus 6 ~~I~IlD~G~---~~~~~i~r~l~~~G~~~~v~~~~~------------------~~~~~~~~~~dgiIlsGGp~s~~~- 63 (531)
.+|+||+.=. +|...+.|.|...+..+++..+.. +++++...++||+|++|||.+.++
T Consensus 48 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~ 127 (312)
T 2h2w_A 48 LEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPF 127 (312)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCC
Confidence 4899997632 345567788877776666543322 133333467999999999986543
Q ss_pred CCCCCChH--HHHHHHHhCCCcEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEecCCccccCCCCCceEEEEeecc
Q 039743 64 PDAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHG 140 (531)
Q Consensus 64 ~~~~~~~~--~l~~~~~~~~iPvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~ 140 (531)
++.+++.. ++++++.++++|+||||+|+|+++.++|| .....+.+++|+..++++..++|++++++. +.+.++|+
T Consensus 128 ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~pL~~g~~~~--f~vphsr~ 205 (312)
T 2h2w_A 128 EEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAKDSVLFRGHDDF--FWAPHSRY 205 (312)
T ss_dssp GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESSCCGGGTTCCSE--EEEEEEEE
T ss_pred ccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcCCCccccCCCCc--eEeeEEec
Confidence 23456554 78899999999999999999997776666 444456779999999988878999999887 89998854
Q ss_pred -----CccccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 141 -----DEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 141 -----~~v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
+.|..+ +|++++|.|+.|.+++++.++++++|+|||||++..
T Consensus 206 ~e~~~~~v~~~-pga~vLA~S~~~~~q~~~~~~~~~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 206 TEVKKEDIDKV-PELEILAESDEAGVYVVANKSERQIFVTGHPEYDRY 252 (312)
T ss_dssp EECCHHHHTTC-C-CEEEEEETTTEEEEEECSSSSEEEECSCTTCCTT
T ss_pred cccCHHHccCC-CCCEEEEcCCCCcceEEEecCCCEEEEECCCCCCHH
Confidence 334444 599999999999999999877899999999999975
No 37
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.88 E-value=2.5e-23 Score=206.10 Aligned_cols=210 Identities=20% Similarity=0.182 Sum_probs=147.2
Q ss_pred eccccccccccccchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHH---hC-------CcEEEEEEeCCCC
Q 039743 195 FDVCGVNAGWKLENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKA---IG-------DRLHCVFVDNGLL 262 (531)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~---~g-------~~v~~v~id~g~~ 262 (531)
+++|++.+.|+++..++..+.+|++++... ++++|++|||+||++++++++++ +| .+++|++++++.
T Consensus 9 ~~~~~~~~~~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~- 87 (279)
T 3q4g_A 9 REEMRVLPSIDPQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGE- 87 (279)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSS-
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCC-
Confidence 489999999999999999999999998644 68999999999999999998776 33 489999999774
Q ss_pred ChhHHHHHHHHHHHhCCC-cEEEEECchHHHH-------hhc-------CCC-CcccccchhhHHHHHHHHHHHHHhhhh
Q 039743 263 RYKERERVMDTFEKDLHL-PVTCVDATDQFLS-------KLK-------GVI-DPETKRKIIGKEFICIFDAFAHDLEQK 326 (531)
Q Consensus 263 ~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~-------~l~-------~~~-~p~~kr~~~~~~~~~~~~~~a~~~g~~ 326 (531)
..+.+++.+ +|+.+|+ +++++++++.|.. .+. +.. ++..++++..+.+..+++.+|.+.|
T Consensus 88 -~~~~~~A~~-~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g-- 163 (279)
T 3q4g_A 88 -QKDEDEAQL-ALSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVG-- 163 (279)
T ss_dssp -CSCHHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred -hHHHHHHHH-HHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCC--
Confidence 334566665 8999999 8999999866543 221 111 1112333444445567778887766
Q ss_pred cCCCCcEEEecc-cCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 327 LGKKPAYLVQGT-LYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 327 ~~~~~~~l~~Gt-~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
+++.|| |+++.. .|+ .|++++++- .+.||.+++|.|||++|+++|+|+.++.+
T Consensus 164 ------~lVlgTgn~sE~~-----~Gy--------~TkyGD~~~-------di~Pl~dl~Kt~Vr~LA~~lgiP~~i~~K 217 (279)
T 3q4g_A 164 ------GLVLGTDHSAENI-----TGF--------YTKFGDGAC-------DLAPLFGLNKRQVRLLAKTLGAPEQLVYK 217 (279)
T ss_dssp ------EEEBCCCCHHHHH-----HTC--------SCTTTTTCC-------SBCTTTTCCHHHHHHHHHHTTCCHHHHTC
T ss_pred ------CEEecCccHHhhh-----ccc--------hhhcCCccc-------ceeecCCCcHHHHHHHHHHhCCcHHHhcC
Confidence 477777 233221 233 677777544 89999999999999999999999877777
Q ss_pred CCCCCCCccccccCCCCcchHHHHHhhhhHHH
Q 039743 406 HPFPGPGLAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 406 ~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
.|+ +||---.+|+.+++.|+-.++..|.+|
T Consensus 218 ~PS--a~L~~~~~~q~DE~~lg~~Y~~lD~~L 247 (279)
T 3q4g_A 218 TPT--ADLEELAPQKADEAALNLTYEQIDDFL 247 (279)
T ss_dssp CCS--CCC-------------CCCHHHHHHHH
T ss_pred CCC--CCcCCCCCCCCCHHHcCCCHHHHHHHH
Confidence 654 456322379999999955999999995
No 38
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.88 E-value=1.5e-23 Score=224.31 Aligned_cols=174 Identities=20% Similarity=0.209 Sum_probs=122.2
Q ss_pred HHHHHHHHHCCC----EEEEEeCCCC-hh-cc--ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 19 HLITRRIRSLSI----LSLCLSGTCS-LD-DI--TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 19 ~~i~r~l~~~G~----~~~v~~~~~~-~~-~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
.++.++|+.+|+ .+++.+.+.. .+ ++ ...++|||||||||+++... -...+++.+.++++|+||||+|
T Consensus 306 ~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~~~----g~~~~i~~a~~~~~PiLGIClG 381 (545)
T 1s1m_A 306 KSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVE----GMITTARFARENNIPYLGICLG 381 (545)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHH----HHHHHHHHHHHTTCCEEEETHH
T ss_pred HHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCccch----hhHHHHHHHHHCCCcEEEECCh
Confidence 567888887775 4566655421 11 11 14679999999999864321 1235777888889999999999
Q ss_pred HHHHHHHcCCEEeecCc---cc-------------------------------------ceeeeEEEecCCccccCCCCC
Q 039743 91 LQLMVQKLDGVVKVGEK---QE-------------------------------------YGRMEILVERSSGIFGNKKVG 130 (531)
Q Consensus 91 ~Qlla~~~GG~v~~~~~---~e-------------------------------------~G~~~v~~~~~~~l~~~~~~~ 130 (531)
||+|+.++||++.+.+. .| +|++.+.+.+++.+.+.+...
T Consensus 382 ~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~ 461 (545)
T 1s1m_A 382 MQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAP 461 (545)
T ss_dssp HHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSS
T ss_pred HHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCc
Confidence 99999999998864321 11 244445554444443333322
Q ss_pred ceEEEEeeccCcc-----ccC-CCCcEEEEEeCCC-cEEEEEECCCcEE-EEecCCCCCCCcc-cchhhhhheeccc
Q 039743 131 HHQVVWMSHGDEA-----VVL-PDGFEVVARSQQG-AVAAVENREKRLF-GLQYHPEVTHSPE-GMETLRYFLFDVC 198 (531)
Q Consensus 131 ~~~~v~~~H~~~v-----~~l-p~g~~vla~s~~~-~v~ai~~~~~~i~-gvQFHPE~~~~~~-g~~i~~~F~~~~~ 198 (531)
.+..++.|++.| ..+ ++|++++|.++++ .++|++++++++| |+|||||+.+++. |..||++|+ +.|
T Consensus 462 -~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv-~aa 536 (545)
T 1s1m_A 462 -TIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFV-KAA 536 (545)
T ss_dssp -EEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHH-HHH
T ss_pred -eEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHH-HHH
Confidence 234456677666 234 4899999999998 8999999988877 9999999998775 899999998 555
No 39
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.87 E-value=3.5e-23 Score=217.75 Aligned_cols=186 Identities=18% Similarity=0.214 Sum_probs=130.8
Q ss_pred EEEEE----eCCCCcHHHHHHHHH----HCCCEEEEEeCCCC-hhc------cccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 7 LVLIL----DYGSQYTHLITRRIR----SLSILSLCLSGTCS-LDD------ITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~----~~G~~~~v~~~~~~-~~~------~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
+|+++ +.-+.|. ++..+|+ +++..+.+.+.+.. +++ -.+.++||||+|||++.... .-..
T Consensus 295 ~IalVGKY~~l~DaY~-Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~~~----~g~i 369 (535)
T 3nva_A 295 NIALVGKYTKLKDSYI-SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSRGA----EGKI 369 (535)
T ss_dssp EEEEEESCTTSGGGGH-HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSSTTH----HHHH
T ss_pred EEEEEecCcCCchhHH-HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCccH----HHHH
Confidence 58887 2334452 4455554 55677777665432 111 11467999999999874211 1123
Q ss_pred HHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC------------------------------cccceeeeEEEecCC
Q 039743 72 GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE------------------------------KQEYGRMEILVERSS 121 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~------------------------------~~e~G~~~v~~~~~~ 121 (531)
.+++.+.++++|+||||+|||+|+.++||+|.... .+.+|.+++.+.+++
T Consensus 370 ~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~gS 449 (535)
T 3nva_A 370 KAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGT 449 (535)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEECTTS
T ss_pred HHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEcCCC
Confidence 56788888899999999999999999999883200 113467778888887
Q ss_pred ccccCCCCCceEEEEeeccCccc-----cC-CCCcEEEEEeCCCcEEEEEECCCc-EEEEecCCCCCCCc-ccchhhhhh
Q 039743 122 GIFGNKKVGHHQVVWMSHGDEAV-----VL-PDGFEVVARSQQGAVAAVENREKR-LFGLQYHPEVTHSP-EGMETLRYF 193 (531)
Q Consensus 122 ~l~~~~~~~~~~~v~~~H~~~v~-----~l-p~g~~vla~s~~~~v~ai~~~~~~-i~gvQFHPE~~~~~-~g~~i~~~F 193 (531)
.+.+.+... .+.-.+.|++.|. .+ ++|++++|+++|+.++|+++++++ ++|+|||||+.+++ .+..+|++|
T Consensus 450 ~L~~iyG~~-~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~F 528 (535)
T 3nva_A 450 IAYQLYGKK-VVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGF 528 (535)
T ss_dssp HHHHHHTSS-EEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHH
T ss_pred cHHHHhCCC-eeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHH
Confidence 776666543 2334445555552 22 689999999999999999999888 69999999998765 589999999
Q ss_pred eecccc
Q 039743 194 LFDVCG 199 (531)
Q Consensus 194 ~~~~~~ 199 (531)
+ ++|.
T Consensus 529 v-~Aa~ 533 (535)
T 3nva_A 529 I-RAVA 533 (535)
T ss_dssp H-HHHT
T ss_pred H-HHHH
Confidence 8 6553
No 40
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.87 E-value=3.9e-22 Score=199.23 Aligned_cols=175 Identities=17% Similarity=0.150 Sum_probs=133.2
Q ss_pred CEEEEEeCCC---CcHHHHHHHHHHCCCEEEEEeCCC------------------ChhccccCCCCEEEEcCCCCCCCC-
Q 039743 6 ELVLILDYGS---QYTHLITRRIRSLSILSLCLSGTC------------------SLDDITAKNPRVVILSGGPHSVHS- 63 (531)
Q Consensus 6 ~~I~IlD~G~---~~~~~i~r~l~~~G~~~~v~~~~~------------------~~~~~~~~~~dgiIlsGGp~s~~~- 63 (531)
.+|+||+.=. +|...+.|.|...+..+++..+.. +++++...++||+|++|||.+.++
T Consensus 36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~ 115 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF 115 (301)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence 4899997632 344556777766665555533322 133333467999999999986543
Q ss_pred CCCCCChH--HHHHHHHhCCCcEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEec-CCccccCCCCCceEEEEee-
Q 039743 64 PDAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVER-SSGIFGNKKVGHHQVVWMS- 138 (531)
Q Consensus 64 ~~~~~~~~--~l~~~~~~~~iPvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~-~~~l~~~~~~~~~~~v~~~- 138 (531)
++.+++.. ++++++.++++|+||||+|+|+++.++|| .....+.+++|+..++++. .++|++++++. +.+.++
T Consensus 116 ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~~~--f~~phsr 193 (301)
T 2vdj_A 116 EEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQHVKLLQGFDEL--FFAVHSR 193 (301)
T ss_dssp GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCSSCGGGTTCCSE--EEEEEEE
T ss_pred ccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEEEEEecCCCCccccCCCCc--eEeeeEe
Confidence 23456554 78999999999999999999996666655 4445567799999988764 57899999887 888887
Q ss_pred ----ccCccccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 139 ----HGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 139 ----H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
|.+.|..+| |++++|.|+.|.+++++.++++++|+|||||++..
T Consensus 194 ~~~~~~~~v~~~p-ga~vLA~S~~~~~~~~~~~~~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 194 HTEVRESDIREVK-ELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCD 241 (301)
T ss_dssp EEECCHHHHHTCT-TEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTT
T ss_pred ccCcCHHHccCCC-CCEEEEeCCCCcceEEEecCCCEEEEECCCCCCHH
Confidence 446677775 99999999999999999877889999999999975
No 41
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.87 E-value=7.6e-23 Score=203.10 Aligned_cols=210 Identities=17% Similarity=0.118 Sum_probs=150.4
Q ss_pred ccccccccccccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC--------CcEEEEEEeCCCCChh
Q 039743 196 DVCGVNAGWKLENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG--------DRLHCVFVDNGLLRYK 265 (531)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g--------~~v~~v~id~g~~~~~ 265 (531)
+..++.++|+++..+++.+..|++++.. .++|+|++|||+||+++++|++++.+ .++++++++++.. .
T Consensus 8 ~~~~~~~~~~~~~~i~~~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~~--~ 85 (271)
T 1kqp_A 8 RELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQ--Q 85 (271)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSC--T
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--C
Confidence 4568899999999999999999999843 46899999999999999999998853 5899999997643 3
Q ss_pred HHHHHHHHHHHhCCC-cEEEEECchHHH---HhhcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEec
Q 039743 266 ERERVMDTFEKDLHL-PVTCVDATDQFL---SKLKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQG 337 (531)
Q Consensus 266 e~~~~~~~la~~lgi-~~~vvd~~~~f~---~~l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~G 337 (531)
+.+++.+ +|+.+|+ +|+++++++.+. +.+....++....+..||. +...+..+|.+.+ +..+.+|
T Consensus 86 d~~~A~~-va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g------~lvl~tg 158 (271)
T 1kqp_A 86 DEDDAQL-ALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEG------LLVLGTD 158 (271)
T ss_dssp THHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHT------CEEBCCC
T ss_pred CHHHHHH-HHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCC------CEEEECc
Confidence 5666665 8999999 999999985442 2222110111122333443 2335566777665 4333333
Q ss_pred ccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccc
Q 039743 338 TLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV 417 (531)
Q Consensus 338 t~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~ 417 (531)
+ +++. +.|+ .|.++.+ ..++.||.+|+|+|||++|+++|+|.+++.+.|+ +||..+.
T Consensus 159 n-~~E~-----~~Gy--------~t~~gd~-------~~~~~Pl~~l~K~eVr~la~~lglp~~i~~k~ps--a~L~~~~ 215 (271)
T 1kqp_A 159 H-AAEA-----VTGF--------FTKYGDG-------GADLLPLTGLTKRQGRTLLKELGAPERLYLKEPT--ADLLDEK 215 (271)
T ss_dssp C-HHHH-----TTTC--------SCTTTTT-------CCSBCTTTTCCHHHHHHHHHHTTCCTHHHHSCCB--CCCCSSS
T ss_pred c-HHHh-----ccCC--------ccccccc-------cccccccccCCHHHHHHHHHHcCCCHhhccCCCC--cccccCC
Confidence 2 3322 2333 3444432 2489999999999999999999999777777664 6688877
Q ss_pred cCCCCcchHHHHHhhhhHHH
Q 039743 418 LGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 418 ~g~vt~~~l~~~~~~~d~~~ 437 (531)
+|+.|++.|+-.++++|.++
T Consensus 216 ~~q~De~~lg~~Y~~ld~~l 235 (271)
T 1kqp_A 216 PQQSDETELGISYDEIDDYL 235 (271)
T ss_dssp TTCBHHHHHSSCHHHHHHHH
T ss_pred CCCCCHHHhCCCHHHHHHHH
Confidence 89999999944899999995
No 42
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.87 E-value=1.4e-22 Score=200.03 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=149.5
Q ss_pred cccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 205 KLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 205 ~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+++.+.+...+.|+++ + .++++|++|||+||+++++++++++| .+++++++++|.. .+.+.+.+ +|+.+|++++
T Consensus 5 ~~~~~~~~l~~~i~~~-~-~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~--~~~~~a~~-~a~~lgi~~~ 79 (257)
T 2e18_A 5 DYDKVIERILEFIREK-G-NNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFEN--KDVEDAKL-VAEKLGIGYK 79 (257)
T ss_dssp CHHHHHHHHHHHHHHH-C-TTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCS--THHHHHHH-HHHHHTCEEE
T ss_pred CHHHHHHHHHHHHHHh-C-CCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCc--hHHHHHHH-HHHHhCCCEE
Confidence 3455667778888887 4 78999999999999999999999987 8999999999964 66677765 8999999999
Q ss_pred EEECchH---HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccc
Q 039743 284 CVDATDQ---FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360 (531)
Q Consensus 284 vvd~~~~---f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~i 360 (531)
+++++.. |.+.+....++...+.++.+.++..+.+.|++.| +..+++|++.+|... .
T Consensus 80 ~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g------~~vl~tg~~~e~~~G------y-------- 139 (257)
T 2e18_A 80 VINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLG------RIVLGTSNRSEFLTG------Y-------- 139 (257)
T ss_dssp ECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHT------CEEECCCCHHHHHHT------C--------
T ss_pred EEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC------CEEEEcCchhHHhcC------C--------
Confidence 9999854 4444443222322333444456678888888887 788889987655432 2
Q ss_pred ccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHH
Q 039743 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQS 440 (531)
Q Consensus 361 kt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~ 440 (531)
.+.++. ...+++||.+++|+||+++++++|+|.+++.+.|+++ |. +++.+++.++-.++..|.++...
T Consensus 140 ~t~~g~-------~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~--l~---~~q~de~~lg~~y~~ld~~l~~~ 207 (257)
T 2e18_A 140 FTKWGD-------GASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAG--LW---EGQTDEDELGISYNLLDEILWRM 207 (257)
T ss_dssp SCTTST-------TCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCC--SS---TTCCHHHHHTSCHHHHHHHHHHH
T ss_pred eeccCC-------CccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCC--cC---CCCcCHhhcCCCHHHHHHHHHHH
Confidence 122222 2358999999999999999999999988888877665 32 28888888843888888886553
No 43
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.87 E-value=1.3e-22 Score=213.27 Aligned_cols=186 Identities=18% Similarity=0.280 Sum_probs=130.5
Q ss_pred cCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCC-CCChhHHHHHHHHHHHhC-----CCcEEEEECchHHHHhh
Q 039743 222 GLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNG-LLRYKERERVMDTFEKDL-----HLPVTCVDATDQFLSKL 295 (531)
Q Consensus 222 ~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g-~~~~~e~~~~~~~la~~l-----gi~~~vvd~~~~f~~~l 295 (531)
+..+++++|+|||+||+++++++++. |.+++|+|+|++ +.++.+.+.+.+ +|+.+ |++++++++++.+....
T Consensus 185 ~~~~kvlvalSGGvDS~vll~ll~~~-G~~v~av~v~~~~~~~~~~~~~v~~-~a~~l~~~~ggi~~~vv~~~~~~~~i~ 262 (413)
T 2c5s_A 185 GVGGKVMVLLSGGIDSPVAAYLTMKR-GVSVEAVHFHSPPFTSERAKQKVID-LAQELTKYCKRVTLHLVPFTEVQKTIN 262 (413)
T ss_dssp TTTEEEEEECCSSSHHHHHHHHHHHB-TEEEEEEEEECTTTSCHHHHHHHHH-HHHHHGGGSSCEEEEEEECHHHHHHHH
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHHc-CCcEEEEEEeCCCCCCHHHHHHHHH-HHHHHHHhCCCCeEEEEECcHHHHHHH
Confidence 34678999999999999999999986 999999999986 333445555554 67777 89999999987654322
Q ss_pred cCCCCcccccch-hhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 296 KGVIDPETKRKI-IGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 296 ~~~~~p~~kr~~-~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
.+. |+..+|+ +.+.+++.+.++|++.| +++|++||+++|+.++ +..|+.+++....
T Consensus 263 ~~~--~~~~~c~~~Rr~~~~~~~~~A~~~g------~~~I~tG~~~dD~ae~---------------~l~~l~~~~~~~~ 319 (413)
T 2c5s_A 263 KEI--PSSYSMTVMRRMMMRITERIAEERN------ALAITTGESLGQVASQ---------------TLDSMHTINEVTN 319 (413)
T ss_dssp HHS--CGGGHHHHHHHHHHHHHHHHHHHTT------CCEEECCCCSSSTTSC---------------CHHHHHHHGGGCC
T ss_pred hcC--CcccHHHHHHHHHHHHHHHHHHHcC------CCEEEEcccchhhHHH---------------HHHHHhcccccCC
Confidence 222 2222344 44457778889999888 8999999999998763 1122222333345
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccc-c-CCCCcchHHHHHhhhhHHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV-L-GDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~-~-g~vt~~~l~~~~~~~d~~~ 437 (531)
..+++||..++|+||+++|+++|++. .+.+|++++| .|+ + +.+|++++ +.++++|..+
T Consensus 320 ~~virPL~~l~K~eI~~~a~~~Gl~~--~~~~p~~~~c--~~~~~~~~~t~~~l-~~l~~~E~~l 379 (413)
T 2c5s_A 320 YPVIRPLITMDKLEIIKIAEEIGTYD--ISIRPYEDCC--TVFTPASPATKPKR-EKANRFEAKY 379 (413)
T ss_dssp SCEECTTTTCCHHHHHHHHHHTTCHH--HHTSCC----------------CCCH-HHHHHHHTTS
T ss_pred CEEEeccCCCCHHHHHHHHHHcCCCc--cccCCCCCCC--eeeCCCCCchHHHH-HHHHHHHHhc
Confidence 67999999999999999999999974 3357888877 465 4 67999999 8888877664
No 44
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.84 E-value=1.2e-21 Score=194.55 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=145.5
Q ss_pred ccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 206 LENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
++...+.....|++++.. .++++|++|||+||+++++++.++.+.++++++++++..+..+.+.+.+ +|+.+|++++
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~~~e~~~a~~-~a~~lgi~~~ 83 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALN-LCEKFSIPYT 83 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHH-HHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHH-HHHHcCCCEE
Confidence 445566677777777532 4689999999999999999999986689999999999877778777776 8999999999
Q ss_pred EEECchH---HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccc
Q 039743 284 CVDATDQ---FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360 (531)
Q Consensus 284 vvd~~~~---f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~i 360 (531)
++++++. |.+.+... +|...+.++.+.++..+.+.|++.| +..|++|+. ++.. .|+
T Consensus 84 ~i~i~~~~~~~~~~~~~~-~~~~~~n~~~r~R~~~l~~~A~~~g------~~vl~tg~~-~E~~-----~Gy-------- 142 (268)
T 1xng_A 84 EYSIAPYDAIFSSHFKDA-SLTRKGNFCARLRMAFLYDYSLKSD------SLVIGTSNK-SERM-----LGY-------- 142 (268)
T ss_dssp ECCCHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHHHHHHHHT------CEEBCCCCH-HHHH-----HTC--------
T ss_pred EEeChHHHHHHHHHhhhc-CCchHHHHHHHHHHHHHHHHHHHCC------CEEEECCcH-HHHh-----cCc--------
Confidence 9999864 33333321 2333333444456678888888887 667777753 2221 122
Q ss_pred ccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 361 kt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
.+.++. ...+++||.+++|+||+++++++|+|..++.+.|++ ||. +++.+++.++-.++..|.++..
T Consensus 143 ~t~~gd-------~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa--~l~---~~q~de~~lg~~y~~ld~~l~~ 209 (268)
T 1xng_A 143 GTLFGD-------LACAINPIGELFKTEVYELARRLNIPKKILNKPPSA--DLF---VGQSDEKDLGYPYSVIDPLLKD 209 (268)
T ss_dssp SCTTTT-------TCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCC--CSS---TTCCHHHHHSSCHHHHHHHHHH
T ss_pred ccccCC-------CCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCc--CcC---CCCcchhhcCCCHHHHHHHHHH
Confidence 122222 235899999999999999999999997777776655 443 3888888884488899988644
No 45
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.83 E-value=7.2e-22 Score=195.64 Aligned_cols=211 Identities=21% Similarity=0.198 Sum_probs=149.4
Q ss_pred eccccccccccccchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHH---hC---C--cEEEEEEeCCCCCh
Q 039743 195 FDVCGVNAGWKLENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKA---IG---D--RLHCVFVDNGLLRY 264 (531)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~---~g---~--~v~~v~id~g~~~~ 264 (531)
.+.++..+.++++..++..+.+|++++.+. ++++|++|||+||++++++++++ +| . ++++++++++. .
T Consensus 15 ~~~~~~~~~~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~~--~ 92 (285)
T 3dpi_A 15 AAELHVSPTFDARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGA--Q 92 (285)
T ss_dssp HHHTTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC---
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCCC--H
Confidence 377789999999999999999999998643 68999999999999998887765 43 2 68999998764 3
Q ss_pred hHHHHHHHHHHHhCC-CcEEEEECchHHH---Hhhc--CCC--C----cccccchhhHHHHHHHHHHHHHhhhhcCCCCc
Q 039743 265 KERERVMDTFEKDLH-LPVTCVDATDQFL---SKLK--GVI--D----PETKRKIIGKEFICIFDAFAHDLEQKLGKKPA 332 (531)
Q Consensus 265 ~e~~~~~~~la~~lg-i~~~vvd~~~~f~---~~l~--~~~--~----p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~ 332 (531)
.+.+++.+ +|+.+| ++++++|+++.|. +.+. +.. + +..++.+..+.+..+++.+|.+.|
T Consensus 93 ~~~~dA~~-~a~~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g-------- 163 (285)
T 3dpi_A 93 HDEADARR-ALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARN-------- 163 (285)
T ss_dssp --CHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHH-HHHHcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCC--------
Confidence 45556665 788998 7999999986643 3332 221 1 112333333445557777777665
Q ss_pred EEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCC
Q 039743 333 YLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPG 412 (531)
Q Consensus 333 ~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~ 412 (531)
+++.||. +..|. ..| ..|++++++- ++.||.+++|.||+++|+++|+|++++.+.| .+|
T Consensus 164 ~lVlgTg--n~sE~--~~G--------y~T~~GD~~~-------~~~Pl~~l~K~eV~~la~~lg~p~~i~~k~p--Sa~ 222 (285)
T 3dpi_A 164 GVVIGTD--HAAES--VMG--------FFTKFGDGGA-------DVLPLAGLTKRRVRALARMLGADEPLVLKTP--TAD 222 (285)
T ss_dssp EEEBCCC--CHHHH--HHH--------HHHCCCCCCC-------SBCTTTTCCHHHHHHHHHHTTCCHHHHTCCC--HHH
T ss_pred CEEEeCc--cHHhh--hCC--------cccccCCCce-------eEeeecCCcHHHHHHHHHHcCCCHHHhcCCC--CCC
Confidence 4777772 22231 112 3666765433 8999999999999999999999987776655 455
Q ss_pred ccccccCCCCcchHHHHHhhhhHHH
Q 039743 413 LAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 413 la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
|.--.+|+.+++.|+-.|++.|.+|
T Consensus 223 L~~l~~~q~DE~~lg~~Y~~lD~~L 247 (285)
T 3dpi_A 223 LETLRPQRPDEHAYGITYEQIDDFL 247 (285)
T ss_dssp HGGGSCSCC--CCCCCCHHHHHHHH
T ss_pred cccCCCCCCcHHHcCCCHHHHHHHH
Confidence 6433469999999955999999995
No 46
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.83 E-value=2.7e-21 Score=212.35 Aligned_cols=201 Identities=17% Similarity=0.210 Sum_probs=138.6
Q ss_pred cchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 207 ENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+.+.+.+...|++++... ++++|++|||+||+|+|+|+++++| .++++++++++..++.+.+++.+ +|+.||++++
T Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~~~v~~v~m~~~~~~~~~~~~A~~-la~~lgi~~~ 385 (590)
T 3n05_A 307 EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAE-LARRTGLNFR 385 (590)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCSSCCHHHHHHHHH-HHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCcccEEEEEECCCCCCHHHHHHHHH-HHHHcCCcEE
Confidence 445567777788887533 6899999999999999999999999 89999999999988889888887 8999999999
Q ss_pred EEECchHHHHhhcCCC-CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc
Q 039743 284 CVDATDQFLSKLKGVI-DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS 362 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~-~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt 362 (531)
++|+++.|...+..+. ++-....+..+.+..++..+|.+.| +..+.+| ++++.. .|+ .|
T Consensus 386 ~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g------~~vl~TG-n~se~~-----~Gy--------~t 445 (590)
T 3n05_A 386 TVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEG------HIVLAPG-NKSELA-----VGY--------ST 445 (590)
T ss_dssp ECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHT------CEEBCCC-CHHHHH-----HTC--------CC
T ss_pred EEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcC------CEEEeCC-CHHHHh-----cCc--------hh
Confidence 9999877654443322 1111112222335557777888777 6777777 444432 122 22
Q ss_pred ccccCCCCcccccceecccccCCHHHHHHHHHHcC-----------CCccccccCCCCCCCccccccCCCCcchHHHHHh
Q 039743 363 HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN-----------VPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILR 431 (531)
Q Consensus 363 ~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg-----------lp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~ 431 (531)
.++. ...++.||.+++|+|||++|+++| +|+++++++|+|+ | .+++.|++.| ..++
T Consensus 446 ~~gd-------~~~~~~Pl~~l~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~--L---~p~q~de~~l-~~Y~ 512 (590)
T 3n05_A 446 LYGD-------SVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAE--L---RPGQVDTDSL-PDYP 512 (590)
T ss_dssp SSCT-------TSCSBCTTTTSCHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC----------------------CHH
T ss_pred hcCC-------CccceeecCCCcHHHHHHHHHHhCcccccccccccChHHHhCCCCCCC--C---CCCCcCcccc-CCHH
Confidence 2222 124789999999999999999999 8999999999887 2 5799999999 6899
Q ss_pred hhhHHHHHHH
Q 039743 432 QVDEIFIQSI 441 (531)
Q Consensus 432 ~~d~~~~~~l 441 (531)
..|.++...+
T Consensus 513 ~~D~~l~~~~ 522 (590)
T 3n05_A 513 VLDAILELYV 522 (590)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 47
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.79 E-value=1.6e-19 Score=173.49 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=112.1
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHH---Hhh--cCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFL---SKL--KGV 298 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~---~~l--~~~ 298 (531)
.++++|++|||+||+++++++++. |.+++++|+|+|+....|.+.+.+ +|+.+|+++++++.+.... +.+ ..+
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-~~~v~~~~~~~~~~~~~e~~~a~~-~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~ 80 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-FEEVETVTFHYNQRHSQEVEVAKS-IAEKLGVKNHLLDMSLLNQLAPNALTRNDI 80 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSCTTCHHHHHHHH-HHHTTCCCEEEEECGGGGGGSTGGGC----
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-CCceEEEEEeCCCCCHHHHHHHHH-HHHHhCCCeEEEeChHHhhhcccccccccc
Confidence 468999999999999999999987 789999999999876667666665 8999999999999975210 001 011
Q ss_pred CCc-----ccccchhhHH-HH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 299 IDP-----ETKRKIIGKE-FI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 299 ~~p-----~~kr~~~~~~-~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
..| ...+++.++. ++ .++.+.|++.| +++|++||+.+|..+. +++ +...++...+......
T Consensus 81 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g------~~~i~tG~~~dd~~~~----~~~--~~~~~~~l~~~~~~~~ 148 (219)
T 3bl5_A 81 EIEVKDGELPSTFVPGRNLVFLSFASILAYQIG------ARHIITGVCETDFSGY----PDC--RDEFVKSCNVTVNLAM 148 (219)
T ss_dssp ----------CCCCTTHHHHHHHHHHHHHHHHT------CSEEECCCCC----CC----GGG--SHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCceeechHHHHHHHHHHHHHHcC------CCEEEEeccccccCCC----CCC--CHHHHHHHHHHHHhcc
Confidence 111 0112233343 44 56688888887 8999999999998652 110 0111221111100001
Q ss_pred ccccceecccccCCHHHHHHHHHHcCCCccccccCC
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP 407 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P 407 (531)
...+++++||.+++|+||+++++++|+|..++...|
T Consensus 149 ~~~~~ii~PL~~~~K~ei~~~a~~~glp~~~~~~t~ 184 (219)
T 3bl5_A 149 EKPFVIHTPLMWLNKAETWKLADELGALDFVKNNTL 184 (219)
T ss_dssp TSCCEEECTTTTCCHHHHHHHHHHTTCHHHHHHHCC
T ss_pred CCCeEEEeccccCCHHHHHHHHHHcCCCccchhhee
Confidence 135679999999999999999999999765455444
No 48
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.78 E-value=7e-19 Score=182.27 Aligned_cols=172 Identities=22% Similarity=0.305 Sum_probs=122.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC--------hhHHHHHHHHHHHhCCCcEEEEECchHHHHhh
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR--------YKERERVMDTFEKDLHLPVTCVDATDQFLSKL 295 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~--------~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l 295 (531)
.++|+||+|||+||+|+|+++++. |.+|+++|++++... ..+.+.+.+ +|+.+||+++++|+++.|.+.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~-va~~lGIp~~vv~~~~~~~~~v 86 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ-GYDVIGIFMKNWDDTDENGVCTATEDYKDVVA-VADQIGIPYYSVNFEKEYWDRV 86 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCCCC----CHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHT
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHc-CCcEEEEEEECCCcccccccCCCHHHHHHHHH-HHHHhCCcEEEEeChHHHHHHH
Confidence 468999999999999999999987 999999999998642 245555555 8999999999999987664321
Q ss_pred ---------cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCcc-ccCCC---CCCCCCccccc
Q 039743 296 ---------KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI-ESCPP---PGTGRTHSHTI 360 (531)
Q Consensus 296 ---------~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~-es~~~---~g~g~~~~~~i 360 (531)
.+.+ |. .|+.|+.+ +..+.+.|+++| +++|++||+.+|.. ++... .+. +..
T Consensus 87 ~~~~l~~y~~G~t-pn--pc~~C~r~ik~~~l~~~A~~~G------~d~IatGH~a~d~~~~~~~~~l~rg~-----d~~ 152 (376)
T 2hma_A 87 FEYFLAEYRAGRT-PN--PDVMCNKEIKFKAFLDYAITLG------ADYVATGHYARVARDEDGTVHMLRGV-----DNG 152 (376)
T ss_dssp HHHHHHHHHTTCC-CC--HHHHHHHHTTTTHHHHHHHTTT------CSEEECCCSEEEEECSSSCEEEEECS-----STT
T ss_pred HHHHHHHHhcCCC-CC--hHHHHHHHHHHHHHHHHHHhCC------CCEEEECcchhhhhCCCchhhhhhcc-----ccc
Confidence 1221 21 24556553 457788888887 89999999999876 43210 111 011
Q ss_pred c-cccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCc
Q 039743 361 K-SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGL 413 (531)
Q Consensus 361 k-t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~l 413 (531)
+ .-+.+.+++.....++++||.+++|+|||++|+++|||. ..+.+..+.|+
T Consensus 153 kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~--~~k~~s~~~cf 204 (376)
T 2hma_A 153 KDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLST--AKKKDSTGICF 204 (376)
T ss_dssp TCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTT--TTCCCCCSCTT
T ss_pred cccchhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCCCc--ccCCCCCCccc
Confidence 1 012344454433467999999999999999999999994 33334456665
No 49
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.78 E-value=5.3e-19 Score=188.59 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=122.2
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHH---hCCcEEEEEEeCCCC-C--hhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDNGLL-R--YKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~---~g~~v~~v~id~g~~-~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
+.+.++++||+|||+||+++++++++. .|.++.++|+|||+. . ..+.+.+.+ +|+.+|+++++++++...+..
T Consensus 15 ~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~-~~~~lgi~~~v~~~~~~~~~~ 93 (464)
T 3a2k_A 15 LSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKR-FCVERRILCETAQIDVPAFQR 93 (464)
T ss_dssp SSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHH-HHHHTTCEEEEEECCCHHHHT
T ss_pred CCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHH-HHHHcCCcEEEEEechhhhhh
Confidence 555789999999999999999999874 478999999999997 2 234444544 899999999999997422111
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
-.+ .+++. .+...++..|.+.|++.| +++|++||+.+|.+|+.. ..|.| ..++.++++
T Consensus 94 ~~~-~~~e~---~aR~~Ry~~l~~~a~~~g------~~~IatgH~~dD~aEt~L~~l~rG~g---------~~gL~gm~~ 154 (464)
T 3a2k_A 94 SAG-LGAQE---AARICRYRFFAELMEKHQ------AGYVAVGHHGDDQVETILMRLVRGST---------SKGYAGIPV 154 (464)
T ss_dssp TTT-CCSHH---HHHHHHHHHHHHHHHTTT------CCEEECCCCHHHHHHHHHHHHHHCCC---------SSSTTCSCS
T ss_pred ccC-CCHHH---HHHHHHHHHHHHHHHHcC------cCEEEEeCChHHHHHHHHHHHHcCCC---------cccccCCCc
Confidence 111 23332 334557788999998887 899999999999998631 12221 123556655
Q ss_pred cc---ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 372 DM---KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 372 ~~---~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.. ...+++||.+++|+||+++++.+|+|. +..|++
T Consensus 155 ~~~~~~~~iiRPLl~~~k~eI~~ya~~~gl~~---~~d~sn 192 (464)
T 3a2k_A 155 KRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSP---RCDPSN 192 (464)
T ss_dssp EEECSSSEEECGGGGSCHHHHHHHHHHTCCSS---CSCTTC
T ss_pred cccCCCCEEECCCccCcHHHHHHHHHHcCCCe---EECCCC
Confidence 43 257999999999999999999999995 444544
No 50
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.77 E-value=1e-18 Score=181.11 Aligned_cols=171 Identities=20% Similarity=0.262 Sum_probs=116.0
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC--------hhHHHHHHHHHHHhCCCcEEEEECchHHHHh-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR--------YKERERVMDTFEKDLHLPVTCVDATDQFLSK- 294 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~--------~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~- 294 (531)
.++|+||+|||+||+|+|+++++. |.+|+++|++++... ..+.+.+.+ +|+.|||+++++|+++.|.+.
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~-va~~LGIp~~vvd~~~~f~~~v 94 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQ-GYQVEGLFMKNWEEDDGEEYCTAAADLADAQA-VCDKLGIELHTVNFAAEYWDNV 94 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTT-CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHT
T ss_pred CCEEEEEEEChHHHHHHHHHHHHc-CCeEEEEEEEcCccccccCCCCCHHHHHHHHH-HHHHcCCcEEEEeCcHHHHHHH
Confidence 568999999999999999999987 999999999998653 234555555 899999999999998766432
Q ss_pred -------h-cCCCCcccccchhhHHH--HHHHHHHHHH-hhhhcCCCCcEEEecccCCCccccCC---CCCCCCCccccc
Q 039743 295 -------L-KGVIDPETKRKIIGKEF--ICIFDAFAHD-LEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTI 360 (531)
Q Consensus 295 -------l-~~~~~p~~kr~~~~~~~--~~~~~~~a~~-~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~i 360 (531)
. .+.+ | ..|+.|+.+ ++.+.+.|++ +| +++|++||+.+|..++.. ..+. +..
T Consensus 95 ~~~~~~ey~~G~t-p--npc~~Cnr~ik~~~l~~~A~~~~G------ad~IatGH~a~d~~~~~~~~l~rg~-----~~~ 160 (380)
T 2der_A 95 FELFLAEYKAGRT-P--NPDILCNKEIKFKAFLEFAAEDLG------ADYIATGHYVRRADVDGKSRLLRGL-----DSN 160 (380)
T ss_dssp HHHHHHHHHTTCC-C--CHHHHHHHHTTTTHHHHHHHHTTC------CSEEECCCSCEEEEETTEEEEECCS-----STT
T ss_pred HHHHHHHHHcCCC-C--ChhHHHHHHHHHHHHHHHHHhhcC------CCEEEEccccccccccchHHHhccc-----ccc
Confidence 1 2221 2 124566653 5678888887 77 899999999998765421 1111 011
Q ss_pred cc-ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCC-CCCCCc
Q 039743 361 KS-HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP-FPGPGL 413 (531)
Q Consensus 361 kt-~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P-~~~p~l 413 (531)
+. -+.+.+++......+++||.+++|+||+++|+++|||. ...| ..+.|+
T Consensus 161 kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~---~~kp~s~~~cf 212 (380)
T 2der_A 161 KDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVT---AKKKDSTGICF 212 (380)
T ss_dssp TCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC---------------
T ss_pred cccceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCC---ccCCCCCCccc
Confidence 10 12244444333357999999999999999999999994 4444 446665
No 51
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.76 E-value=7.7e-19 Score=178.47 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=122.8
Q ss_pred hhhhhhhhhhcc--ccCccceeeccCCCCCHHHHHHHHHHH---hCCc-EEEEEEeCCCCC--hhHHHHHHHHHHHhCCC
Q 039743 209 VLDEEVKCIKDT--VGLEDHVICALSGGVDSTVAATLVHKA---IGDR-LHCVFVDNGLLR--YKERERVMDTFEKDLHL 280 (531)
Q Consensus 209 ~~~~~~~~i~~~--v~~~~kvvvalSGGvDS~v~a~l~~k~---~g~~-v~~v~id~g~~~--~~e~~~~~~~la~~lgi 280 (531)
+.++..+.++++ +.+.++++||+|||+||+++++++++. +|.+ +.++|+|+|+.. ..+.+.+.+ +|+.+|+
T Consensus 7 ~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~-~a~~lgi 85 (317)
T 1wy5_A 7 VIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKE-FAKERNM 85 (317)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHH-HHHHcCC
Confidence 344445555544 555789999999999999999999874 4778 999999999863 234444544 8999999
Q ss_pred cEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC---CCCCCCcc
Q 039743 281 PVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP---PGTGRTHS 357 (531)
Q Consensus 281 ~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~---~g~g~~~~ 357 (531)
++++++++........+ .+++. .+...++..|.+.|++.| +++|++||+.+|..|+... .|.|
T Consensus 86 ~~~v~~~~~~~~~~~~~-~~~e~---~ar~~Ry~~l~~~a~~~g------~~~i~~Gh~~dD~~Et~l~~l~rg~g---- 151 (317)
T 1wy5_A 86 KIFVGKEDVRAFAKENR-MSLEE---AGRFLRYKFLKEILESEG------FDCIATAHHLNDLLETSLLFFTRGTG---- 151 (317)
T ss_dssp CEEEEECCHHHHHHHTT-CCHHH---HHHHHHHHHHHHHHHHTT------CSEEECCCCHHHHHHHHHHHHHHCCC----
T ss_pred cEEEEEEechhhhccCC-CCHHH---HHHHHHHHHHHHHHHHcC------CCEEEEeCchhHHHHHHHHHHHhCCC----
Confidence 99999987432221112 23331 222446778888998887 8999999999999985211 1221
Q ss_pred cccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 358 ~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
..++.++++. ...+++||.+++|+||+++++++|+|.
T Consensus 152 -----~~gl~~~~~~-~~~iirPLl~~~k~eI~~~~~~~gl~~ 188 (317)
T 1wy5_A 152 -----LDGLIGFLPK-EEVIRRPLYYVKRSEIEEYAKFKGLRW 188 (317)
T ss_dssp -----HHHHHCSCSE-ETTEECTTTTCCHHHHHHHHHHTTCCC
T ss_pred -----cccccCCCCC-CCeEECCCccCCHHHHHHHHHHcCCCe
Confidence 0124455442 347999999999999999999999995
No 52
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=2.3e-19 Score=170.65 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=106.4
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh-cCC---C
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL-KGV---I 299 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l-~~~---~ 299 (531)
.++++|++|||+||+++++++++. |.++.++|+|+|+.. +.+.+.+ +|+.+|+++++++++..|.... ... .
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~~-g~~v~~~~v~~~~~~--~~~~~~~-~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKKL-GYNPHLITINFGVIP--SYKLAEE-TAKILGFKHKVITLDRKIVEKAADMIIEHK 81 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHT-TEEEEEEEEECSSSC--TTHHHHH-HHHHHTCEEEEEECCTHHHHHHHHHHHHHS
T ss_pred CCeEEEEEECcHHHHHHHHHHHHc-CCCeEEEEEeCCCch--HHHHHHH-HHHHhCCCEEEEECCHHHHHHHHHHHHhcC
Confidence 468999999999999999999875 899999999999876 5566665 8999999999999987654321 110 1
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
.|.. .|...++.++.+.|+ | +++|++||+.+|.+|+. .++ ++.+++....+.+++
T Consensus 82 ~~~~---~c~~~~~~~l~~~A~--g------~~~i~tGh~~dD~~et~--~~~------------gl~~~~~~~~~~iir 136 (203)
T 3k32_A 82 YPGP---AIQYVHKTVLEILAD--E------YSILADGTRRDDRVPKL--SYS------------EIQSLEMRKNIQYIT 136 (203)
T ss_dssp SSHH---HHHHHHHHHHHHHTT--T------CSEEECCCCTTCCSSCC--CHH------------HHHHHHHHHTCEEEC
T ss_pred CCcc---HHHHHHHHHHHHHhc--C------CCEEEECCCcccchhhc--chh------------hccCcccccCCeEEe
Confidence 1222 223334445555554 4 89999999999999852 112 111222223467999
Q ss_pred ccccCCHHHHHHHHHHcCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVP 399 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp 399 (531)
||..++|+||+++|+++ ++
T Consensus 137 PLl~~~k~eI~~~a~~~-l~ 155 (203)
T 3k32_A 137 PLMGFGYKTLRHLASEF-FI 155 (203)
T ss_dssp GGGGCCHHHHHHHHHHH-EE
T ss_pred ccCCCCHHHHHHHHHHh-CC
Confidence 99999999999999998 76
No 53
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.73 E-value=6.2e-18 Score=164.13 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=109.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECc--hHHHHh-h--cC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDAT--DQFLSK-L--KG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~--~~f~~~-l--~~ 297 (531)
.++++|++|||+||+++++++.+. +.+++++|+|+|+....|.+.+.+ +|+.+|++ +++++++ ..|... + ..
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~-~~~v~av~~~~g~~~~~e~~~a~~-~a~~lgi~~~~vi~~~~l~~~~~~~l~~~~ 79 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD-YDDVHCITFDYGQRHRAEIEVAQE-LSQKLGAAAHKVLDVGLLNELATSSLTRDS 79 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSSSCHHHHHHHHH-HHHHHTCSEEEEEECTHHHHTSHHHHHHTT
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc-CCCEEEEEEECCCCCHHHHHHHHH-HHHHhCCCceEEEeChhHHHHhhhhccccc
Confidence 358999999999999999999987 789999999999876667666665 89999999 9999998 333211 1 01
Q ss_pred CC---------CcccccchhhHH-HHH-HHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccccc
Q 039743 298 VI---------DPETKRKIIGKE-FIC-IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNV 366 (531)
Q Consensus 298 ~~---------~p~~kr~~~~~~-~~~-~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~ 366 (531)
+. ++.. .++.++. ++. +....|++.| ++.|++||+.+|..+... .++ .+...+....+.
T Consensus 80 ~~v~~~~~~~~~~~~-~~~~~R~~~~~~la~~~A~~~g------~~~I~~G~~~~D~~~~~~-~r~--~~~~~~~~~~~~ 149 (232)
T 2pg3_A 80 IPVPDYDANAQGIPN-TFVPGRNILFLTLASIYAYQVG------AEAVITGVCETDFSGYPD-CRD--EFVKALNQAIVL 149 (232)
T ss_dssp CCCCC---------C-CCCTTHHHHHHHHHHHHHHHHT------CSEEECCCCSCSSSCCGG-GSH--HHHHHHHHHHHH
T ss_pred ccccccccccCCCCC-CeEechHHHHHHHHHHHHHHcC------cCEEEEccCccccCCCCC-CCH--HHHHHHHHHHHH
Confidence 10 1111 2233333 333 3367788887 899999999999875210 011 000011111111
Q ss_pred CCCCcccccceecccccCCHHHHHHHHHHcCC-C
Q 039743 367 GGLPKDMKLKLIEPLKLLFKDEVRQLGRILNV-P 399 (531)
Q Consensus 367 ~~l~~~~~~~ii~PL~~l~K~eVr~la~~lgl-p 399 (531)
+ .....++++||.+++|.||+++++++|+ |
T Consensus 150 ~---~~~~~~i~~PL~~~~K~ei~~~a~~~gl~~ 180 (232)
T 2pg3_A 150 G---IARDIRFETPLMWLNKAETWALADYYQQLD 180 (232)
T ss_dssp H---HTSCCEEECTTTTCCHHHHHHHHHHTTCHH
T ss_pred h---CCCCeEEEEecCCCCHHHHHHHHHHcCCCc
Confidence 1 0124679999999999999999999999 6
No 54
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.73 E-value=4.7e-18 Score=179.64 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=119.1
Q ss_pred hhccccCccceeeccCCCCCHHHHHHHHHHH----hCCcEEEEEEeCCCCCh--hHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 217 IKDTVGLEDHVICALSGGVDSTVAATLVHKA----IGDRLHCVFVDNGLLRY--KERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 217 i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~----~g~~v~~v~id~g~~~~--~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
+.+.+.+.++++||+|||+||+++++++++. .|.++.++|+|||+... .+.+.+.+ +|+.+|+++++++++..
T Consensus 6 l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~-~~~~lgi~~~v~~~~~~ 84 (433)
T 1ni5_A 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN-VCQQWQVPLVVERVQLA 84 (433)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHH-HHHHTTCCEEEECCCCC
T ss_pred HHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHH-HHHHcCCcEEEEEecCC
Confidence 4455666789999999999999999999885 47899999999999743 23444444 89999999999988642
Q ss_pred HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccC
Q 039743 291 FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 291 f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~ 367 (531)
..+ .+++. .+.+.++..|.+.|+ ++++|++||+.+|.+|+.. ..|.|. .++.
T Consensus 85 ----~~~-~~~e~---~aR~~Ry~~l~~~a~--------~~~~i~tgH~~dD~aEt~L~~l~RG~g~---------~gL~ 139 (433)
T 1ni5_A 85 ----QEG-LGIEA---QARQARYQAFARTLL--------PGEVLVTAQHLDDQCETFLLALKRGSGP---------AGLS 139 (433)
T ss_dssp ----CSS-STTTT---HHHHHHHHHHHHTCC--------TTEEEECCCCHHHHHHHHHHHHTTTCCT---------TGGG
T ss_pred ----CCC-CCHHH---HHHHHHHHHHHHHHh--------hCCeEEeeccchHHHHHHHHHHHcCCCc---------cccc
Confidence 111 23332 233445666665553 2789999999999998732 233321 2455
Q ss_pred CCCccc---ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 368 GLPKDM---KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 368 ~l~~~~---~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+|++.. ...+++||.+++|+||+++++.+|+|. +..|++
T Consensus 140 gm~~~~~~~~~~iiRPLl~~~k~eI~~y~~~~gl~~---~~D~sn 181 (433)
T 1ni5_A 140 AMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRW---IEDESN 181 (433)
T ss_dssp CCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCC---BCCCCG
T ss_pred CCCCccccCCceEEccCccCCHHHHHHHHHHcCCCe---EECCCC
Confidence 666543 367999999999999999999999995 444543
No 55
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.71 E-value=1e-17 Score=175.39 Aligned_cols=165 Identities=10% Similarity=0.052 Sum_probs=117.2
Q ss_pred ccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh---
Q 039743 219 DTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK--- 294 (531)
Q Consensus 219 ~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~--- 294 (531)
+.+.+.+||+||+|||+||+++++++++. |.+|+|+|+|+|+....|.+.+.+ +|+++|+ +++++|+++.|.+.
T Consensus 5 ~~l~~~~KVvVA~SGGlDSSvll~~L~e~-G~eViavtvd~Gq~~~~ele~a~~-~A~~lGi~~~~vvD~~eef~~~v~p 82 (455)
T 1k92_A 5 KHLPVGQRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPR-RAMEYGAENARLIDCRKQLVAEGIA 82 (455)
T ss_dssp CSCCTTSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCTTCSCTTHHHH-HHHHHTCSEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCeEEEEEcChHHHHHHHHHHHHc-CCEEEEEEEEcCCCCHHHHHHHHH-HHHHhCCCeEEEEeChHHHHHHhHH
Confidence 34555789999999999999999999998 999999999999865556677766 8999999 89999998777533
Q ss_pred -hcCCCC--cccccchhhH------HHHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccc
Q 039743 295 -LKGVID--PETKRKIIGK------EFICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 295 -l~~~~~--p~~kr~~~~~------~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+..-.. |+.+||+.+. .+++.+.++|++.| +++|++||+. +|... ..
T Consensus 83 ~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~G------ad~IAtGht~kgnDq~r----------------f~ 140 (455)
T 1k92_A 83 AIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDG------VNIWGDGSTYKGNDIER----------------FY 140 (455)
T ss_dssp HHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTT------CCEEECCCCTTSSHHHH----------------HH
T ss_pred HHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcC------CCEEEECCcCCCCCHHH----------------HH
Confidence 211111 1332333221 13467788888887 8999999974 33221 00
Q ss_pred cccCCCCcccccceeccccc-------CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKL-------LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~-------l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.....+. ..++++.|+++ ++|+||+++|+++|+|.......|++
T Consensus 141 ~~~~al~--p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~t~~~pyS 191 (455)
T 1k92_A 141 RYGLLTN--AELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYS 191 (455)
T ss_dssp HHHHHHC--TTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCCCCCCSSE
T ss_pred HHHHhcC--CCCEEECeeccccccccCCCHHHHHHHHHHcCCCcccCCCCCCc
Confidence 0000111 14679999998 79999999999999997544455654
No 56
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.71 E-value=6.4e-18 Score=186.55 Aligned_cols=198 Identities=15% Similarity=0.052 Sum_probs=123.3
Q ss_pred hhhhhhhhccccC--ccceeeccCCCCCHHHHHHH-------HHHHhCCc------------------------------
Q 039743 211 DEEVKCIKDTVGL--EDHVICALSGGVDSTVAATL-------VHKAIGDR------------------------------ 251 (531)
Q Consensus 211 ~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l-------~~k~~g~~------------------------------ 251 (531)
......+++++.+ .++++|++|||+||+++|+| +.+++|.+
T Consensus 288 ~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (634)
T 3ilv_A 288 EATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKIT 367 (634)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhh
Confidence 4445566666543 46899999999999999998 45788965
Q ss_pred ---EEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCC-------CcccccchhhHH----HHHHHH
Q 039743 252 ---LHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI-------DPETKRKIIGKE----FICIFD 317 (531)
Q Consensus 252 ---v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~-------~p~~kr~~~~~~----~~~~~~ 317 (531)
++|+++++...+..+.+++.+ +|+.||++++++|+++.|...++.+. +++......+|. +..+++
T Consensus 368 ~~~~~~v~m~~~~ss~~~~~dA~~-la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~ 446 (634)
T 3ilv_A 368 AVFLTTAYQSTRNSGDETYTSAKT-LAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIW 446 (634)
T ss_dssp HHHEEEEEEECTTCCSHHHHHHHH-HHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHH
T ss_pred hheeeeeecCCCCCCHHHHHHHHH-HHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHH
Confidence 889999977777777788776 89999999999999977654332211 222222233343 334667
Q ss_pred HHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHc-
Q 039743 318 AFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL- 396 (531)
Q Consensus 318 ~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~l- 396 (531)
.+|.+.| + ++.||. +..|. ..|+ .|.+++.. ..+.||.+++|+|||++|+++
T Consensus 447 ~~A~~~g------~--lvlgTg--nksE~--~~Gy--------~T~ygD~~-------~~~~Pl~~l~KteVr~la~~l~ 499 (634)
T 3ilv_A 447 MLTNVKQ------A--LLITTS--NRSEG--DVGY--------ATMDGDTA-------GGIAPIAGVDKDFIRSWLRWAE 499 (634)
T ss_dssp HHHHHHT------C--EEBCCC--CHHHH--HTTC--------SCTTTTTC-------SSBBTTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcC------C--EEeccC--chhhH--hhCC--------ccccCCcc-------cCCcccCCCcHHHHHHHHHHHH
Confidence 7777766 4 555652 23332 1232 23333322 368999999999999999999
Q ss_pred ---CCC--ccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 397 ---NVP--EQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 397 ---glp--~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
|+| +++++++|+|+ |..--.++.|++.| -.++..|.++..
T Consensus 500 ~~~glp~l~~i~~k~pSae--L~p~~~~q~de~~l-~~Y~~lD~~l~~ 544 (634)
T 3ilv_A 500 KNRNQHGLHIVNKLAPTAE--LRPSEYTQTDERDL-MPYDVLARIERK 544 (634)
T ss_dssp HHSCCGGGSSCC---------------------CC-CTTTHHHHHHHH
T ss_pred HcCCCchHHHHcCCCCCcC--cCcCCCCCCCcccc-CCHHHHHHHHHH
Confidence 999 89999988776 32100288888877 677777777543
No 57
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.71 E-value=4.7e-17 Score=156.04 Aligned_cols=160 Identities=12% Similarity=0.047 Sum_probs=112.5
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--cC--C-C
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL--KG--V-I 299 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l--~~--~-~ 299 (531)
++++||+|||+||+|++++++++ +.++.++|+|+|+..++..+.+. .+|+++|+++++++.+..+.... .+ . .
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~-~~~v~~v~vd~g~~~~e~~~~v~-~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~ 122 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQI-RPDIPVILTDTGYLFPETYRFID-ELTDKLKLNLKVYRATESAAWQEARYGKLWEQ 122 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHH-STTCEEEEEECSCBCHHHHHHHH-HHHHHTTCEEEEEECSSCHHHHHHHHCCGGGS
T ss_pred CCEEEEecCCHHHHHHHHHHHHh-CCCCeEEEeeCCCCCHHHHHHHH-HHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCC
Confidence 58999999999999999999998 78999999999998665555554 48999999999998864321111 12 0 0
Q ss_pred CcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 300 DPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 300 ~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
+|. .++.||..+ ...+.+.+++.+ ++.+++|++.+|..+ ++++ ..+. ...+..++
T Consensus 123 ~~~-~~~~~~~~~K~~~l~~~~~~~~------~~~i~~G~r~dd~~~-----r~~~---~~~~---------~~~~~~~i 178 (215)
T 1sur_A 123 GVE-GIEKYNDINKVEPMNRALKELN------AQTWFAGLRREQSGS-----RANL---PVLA---------IQRGVFKV 178 (215)
T ss_dssp HHH-HHHHHHHHHTHHHHHHHHHHTT------EEEEECCCCTTSSST-----TTTC---CSEE---------EETTEEEE
T ss_pred Ccc-HHHHHHHHHHHHHHHHHHHhcC------CceEEEEeehhhhhh-----hcCC---Cccc---------cCCCEEEE
Confidence 122 223444432 235566666665 688999999988433 2210 0111 11134589
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFPG 410 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~ 410 (531)
+||.+++|+||++++++.|+|..-++++.|+.
T Consensus 179 ~PLl~~t~~dI~~y~~~~~lp~~~lY~~Gy~s 210 (215)
T 1sur_A 179 LPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLS 210 (215)
T ss_dssp CTTTTCCHHHHHHHHHHHTCCCCGGGGGTCSC
T ss_pred echHhCCHHHHHHHHHHhCCCCChHHhCCCCC
Confidence 99999999999999999999987777776664
No 58
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.70 E-value=2.9e-18 Score=190.32 Aligned_cols=196 Identities=16% Similarity=0.112 Sum_probs=125.7
Q ss_pred hhhhccccC--ccceeeccCCCCCHHHHHHHHHHHh---C---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 215 KCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAI---G---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 215 ~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~---g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
..|++++.+ .++++|++|||+||+|++++++++. | .+++|+++++...++.+.+++.+ +|+.+|++++++|
T Consensus 350 ~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~~~~~~~~~A~~-la~~lgi~~~~i~ 428 (680)
T 3sdb_A 350 SGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIK-LARALGVTFSEID 428 (680)
T ss_dssp HHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC--------CHHHH-HHHHHTCEEEECC
T ss_pred HHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCCCCHHHHHHHHH-HHHHcCCCEEEEE
Confidence 344554432 4689999999999999988888774 4 79999999987777777777776 8999999999999
Q ss_pred CchHHHHhhcCCCCc-----ccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcc
Q 039743 287 ATDQFLSKLKGVIDP-----ETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p-----~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~ 357 (531)
+++.|...+..+.++ .......+|. +..+++.+|.+.| . ++.||. +..|. ..|.
T Consensus 429 i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g------~--lvlgTg--n~sE~--~~Gy----- 491 (680)
T 3sdb_A 429 IGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRG------G--IVLGTG--DLSEL--ALGW----- 491 (680)
T ss_dssp CHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHT------E--EEEECC--CHHHH--HHTC-----
T ss_pred CHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcC------C--EEEeCC--cHHhH--hcCe-----
Confidence 998776555544332 1011122333 3345666776655 3 666663 22232 1122
Q ss_pred ccccccc-ccCCCCcccccceecccccCCHHHHHHHHHHc-----------CCCccccccCCCCCCCccccc----cCCC
Q 039743 358 HTIKSHH-NVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL-----------NVPEQFLKRHPFPGPGLAVRV----LGDV 421 (531)
Q Consensus 358 ~~ikt~~-~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~l-----------glp~~~~~~~P~~~p~la~r~----~g~v 421 (531)
.|.+ ++.. ..+.||.+++|+|||++++++ |+|++++.++|+|+ | +. +++.
T Consensus 492 ---~T~~~gD~~-------~~~~Pl~~l~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~e--L--~p~~~~~~q~ 557 (680)
T 3sdb_A 492 ---STYGVGDQM-------SHYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPE--L--IPTGEEELQS 557 (680)
T ss_dssp ---SCCSSSTTC-------CSEETTTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-----------------
T ss_pred ---eeccCCCcc-------ccccccCCCcHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcC--c--CCCCCCCCCC
Confidence 2333 3321 257999999999999999999 89999999999886 3 32 4889
Q ss_pred CcchHHHHHhhhhHHHHHHHHH
Q 039743 422 TEGNSLDILRQVDEIFIQSIKE 443 (531)
Q Consensus 422 t~~~l~~~~~~~d~~~~~~l~~ 443 (531)
|++.| -.++..|.+|...++.
T Consensus 558 de~~l-g~Y~~~D~~L~~~~~~ 578 (680)
T 3sdb_A 558 SEAKV-GPFALQDFSLFQVLRY 578 (680)
T ss_dssp CHHHH-CCHHHHHHHHHHHHHH
T ss_pred chhhc-CCHHHHHHHHHHHHHC
Confidence 99999 4999999998776653
No 59
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.67 E-value=1.1e-16 Score=165.80 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=110.0
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh-----hcCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK-----LKGV 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~-----l~~~ 298 (531)
+||+||+|||+||+|+++++++. |.+|+|+++|+|+. .|.+.+.+ +|+++|+ +++++|+++.|.+. +..-
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~-G~eViavt~d~Gq~--~Ele~A~~-vA~~lGi~~~~VvDl~eef~~~v~~p~i~~n 90 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK--DDFVAIKE-KALKTGASKVYVEDLRREFVTDYIFTALLGN 90 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCC--CCHHHHHH-HHHHHTCSEEEEEECHHHHHHHTHHHHHTTT
T ss_pred CCEEEEeCCcHHHHHHHHHHHHC-CCeEEEEEEEcCCH--HHHHHHHH-HHHHcCCceEEEEecHHHHHHhhhhHHHhcC
Confidence 58999999999999999999998 99999999999974 56777776 8999999 99999998877543 2221
Q ss_pred CCcccccchh----hHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 299 IDPETKRKII----GKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 299 ~~p~~kr~~~----~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
... +.++.. ++. ....+.+.|+++| +++|++||+... .+..+.......+ ..
T Consensus 91 a~y-eg~Y~~g~~l~Rp~i~~~l~~~A~~~G------ad~IA~G~~~kg--------------nDq~rf~~~~~al--~p 147 (421)
T 1vl2_A 91 AMY-EGRYLLGTAIARPLIAKRQVEIAEKEG------AQYVAHGATGKG--------------NDQVRFELTYAAL--NP 147 (421)
T ss_dssp CCB-TTTBCCHHHHHHHHHHHHHHHHHHHHT------CSEEECCCCTTS--------------SHHHHHHHHHHHH--CT
T ss_pred Ccc-cCceeCCCcccHHHHHHHHHHHHHHcC------CCEEEECCeeCC--------------CChHHHHHHHHhc--CC
Confidence 111 222221 233 3456777888888 899999997531 0101100000011 11
Q ss_pred ccceeccccc-------CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKL-------LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~-------l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+.+++.||++ ++|+|||++|+++|+|.......|++
T Consensus 148 ~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~t~~kp~S 190 (421)
T 1vl2_A 148 NLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKVSKKRPYS 190 (421)
T ss_dssp TSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCSSCCCSSE
T ss_pred CCeEEcccCchhhccccCCHHHHHHHHHHcCCCcccCCCCCCc
Confidence 4679999999 79999999999999997433345544
No 60
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.66 E-value=2.7e-16 Score=163.72 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=111.1
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHH-----hhcCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLS-----KLKGV 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~-----~l~~~ 298 (531)
+|+++|+|||+||+++++++++.+|.+++++|+|+|+ ..+.+.+.+ +|+++|+ +++++|+++.|.+ .+..-
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~g~~V~av~vd~g~--~~e~e~a~~-~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~ 77 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQ--GEEVEEARE-KALRTGASKAIALDLKEEFVRDFVFPMMRAG 77 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSC--SSCHHHHHH-HHHHHTCSEEEEEECHHHHHHHTHHHHHHTT
T ss_pred CcEEEEEeChHHHHHHHHHHHHhhCCcEEEEEEeCCC--HHHHHHHHH-HHHHhCCCeEEEEeCcHHHHHHhhHHHHHcC
Confidence 4799999999999999999999889999999999998 456666665 8999999 7999999866642 22221
Q ss_pred CCcccccch-----hhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCCc
Q 039743 299 IDPETKRKI-----IGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 299 ~~p~~kr~~-----~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
..++ .++. +...++..+.+.|++.| ++++++||+.+ |..+. .. .+++ +.+
T Consensus 78 ~~~e-~~y~~g~~~~R~~~~~~L~~~A~~~G------~~~IatG~~~d~nDq~~f----~~------g~~~------l~p 134 (400)
T 1kor_A 78 AVYE-GYYLLGTSIARPLIAKHLVRIAEEEG------AEAIAHGATGKGNDQVRF----EL------TAYA------LKP 134 (400)
T ss_dssp CCBT-TTBCCTTTTHHHHHHHHHHHHHHHHT------CSEEECCCCTTSSHHHHH----HH------HHHH------HCT
T ss_pred Cccc-cccccCCccchHHHHHHHHHHHHHcC------CCEEEECCCCCcccHHHH----HH------HHHh------cCC
Confidence 1122 1222 22234567888888888 89999999986 65541 11 0111 111
Q ss_pred ccccceecccccC---CHHHHHHHHHHcCCCccccccCC
Q 039743 372 DMKLKLIEPLKLL---FKDEVRQLGRILNVPEQFLKRHP 407 (531)
Q Consensus 372 ~~~~~ii~PL~~l---~K~eVr~la~~lglp~~~~~~~P 407 (531)
.+++++||.++ +|+||+++++++|+|.......|
T Consensus 135 --~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~p 171 (400)
T 1kor_A 135 --DIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKP 171 (400)
T ss_dssp --TCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----C
T ss_pred --CCEEEEeecccccCCHHHHHHHHHHcCCCcccCCCCC
Confidence 35799999998 99999999999999964333334
No 61
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=159.53 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=107.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHHhh-----cC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLSKL-----KG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~~l-----~~ 297 (531)
.++|++|+|||+||+++++++++. |.+|+++|+|+|+. .+.+.+.+ +|+++|++ ++++|+++.|...+ ..
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~-G~eV~av~vd~g~~--~e~e~a~~-~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~ 80 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ-GYDVIAYLANIGQK--EDFEEARK-KALKLGAKKVFIEDVSREFVEEFIWPAIQS 80 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT-TEEEEEEEEESSCC--CCHHHHHH-HHHHHTCSEEEEEECHHHHHHHTHHHHHHT
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc-CCEEEEEEEECCcH--HHHHHHHH-HHHHhCCCEEEEEeChHHHHHHHHHHHHHh
Confidence 468999999999999999999987 99999999999985 45666665 89999998 99999987665432 11
Q ss_pred CCCcccccchhhHH-----HHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccccccCCCC
Q 039743 298 VIDPETKRKIIGKE-----FICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSHHNVGGLP 370 (531)
Q Consensus 298 ~~~p~~kr~~~~~~-----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~~~~~~l~ 370 (531)
-..+ +.++.++.. +++.+.+.|++.| +++|++||+. +|..+. .-+..++.
T Consensus 81 ~a~~-e~~y~~g~~~aRp~i~~~l~~~A~~~G------a~~IatGh~~~~nDq~rf----------------~lg~~~l~ 137 (413)
T 2nz2_A 81 SALY-EDRYLLGTSLARPCIARKQVEIAQREG------AKYVSHGATGKGNDQVRF----------------ELSCYSLA 137 (413)
T ss_dssp TCCB-TTTBCCTTTTHHHHHHHHHHHHHHHHT------CSEEECCCCTTSSHHHHH----------------HHHHHHHC
T ss_pred Cccc-ccccccccccchHHHHHHHHHHHHHcC------CCEEEECCcCcccchHHH----------------HHHHHhcC
Confidence 1111 123334332 3567788888888 8999999987 444321 00011111
Q ss_pred cccccceecccc------cC-CHHHHHHHHHHcCCCc
Q 039743 371 KDMKLKLIEPLK------LL-FKDEVRQLGRILNVPE 400 (531)
Q Consensus 371 ~~~~~~ii~PL~------~l-~K~eVr~la~~lglp~ 400 (531)
. .+++++||+ ++ +|+||+++|+++|+|.
T Consensus 138 p--~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~ 172 (413)
T 2nz2_A 138 P--QIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPI 172 (413)
T ss_dssp T--TCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCC
T ss_pred C--CCceeccccchhhhccCCCHHHHHHHHHHcCCCe
Confidence 1 357999999 78 9999999999999996
No 62
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.59 E-value=1.1e-14 Score=142.83 Aligned_cols=159 Identities=12% Similarity=0.047 Sum_probs=110.2
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHH--hhcCC---C
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLS--KLKGV---I 299 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~--~l~~~---~ 299 (531)
++++|++|||+||+|+++++.+. +.++.++|+|+|...++..+.+. .+|+++|++++++..+..+.. ...+. .
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~-~~~v~vv~idtg~~~~et~~~~~-~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~ 123 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQI-RPDIPVILTDTGYLFPETYRFID-ELTDKLKLNLKVYRATESAAWQEARYGKLWEQ 123 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHH-STTCEEEECCCSCBCHHHHHHHH-HHHHHTTCEEEECCCSSCHHHHHHHTCCGGGS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCHHHHHHHH-HHHHHhCCceEEEcCCCCHHHHHHHcCCcccc
Confidence 58999999999999999999998 67899999999998765555554 489999999999977632211 11120 0
Q ss_pred CcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 300 DPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 300 ~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
+|+ .++.||..+ ..-+.+.+++.+ ++.+++|++.+|..++ .+ ...+. ...+...+
T Consensus 124 ~~~-~~~~cc~~~K~~pl~~~l~~~~------~~~~~tG~r~dds~~R-----~~---l~~~~---------~~~~~~~i 179 (252)
T 2o8v_A 124 GVE-GIEKYNDINKVEPMNRALKELN------AQTWFAGLRREQSGSR-----AN---LPVLA---------IQRGVFKV 179 (252)
T ss_dssp HHH-HHHHHHHHHTHHHHHHHHHHTT------CSEEEECCCSTTTTCC-----TT---SCSEE---------ESSSSEEE
T ss_pred CCc-hHHHHHHHHHHHHHHHHHHhcC------CcEEEEeccccccccc-----cc---Cceee---------cCCCeEEE
Confidence 122 123344332 234555666665 6889999999885432 21 00111 11134589
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+||.+++|+||++++++.|||..-++.+=|+
T Consensus 180 ~PL~~wt~~dV~~y~~~~~lp~~~Ly~~Gy~ 210 (252)
T 2o8v_A 180 LPIIDWDNRTIYQYLQKHGLKYHPLWDEGYL 210 (252)
T ss_dssp CGGGSCCHHHHHHHHHHTTCCCCTTTTTTCS
T ss_pred echhhCCHHHHHHHHHHcCCCCChHHhCCCC
Confidence 9999999999999999999998766666554
No 63
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=99.55 E-value=4e-15 Score=161.95 Aligned_cols=194 Identities=21% Similarity=0.207 Sum_probs=129.4
Q ss_pred hhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECc
Q 039743 212 EEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 212 ~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~ 288 (531)
.+.-.+++++.+ .+++++++|||+||+++|+++.+++| .+|++++|+....+....+++.+ +|+.+|+.+..++++
T Consensus 286 a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~~~v~~v~mp~~~ts~~t~~~a~~-la~~lg~~~~~i~i~ 364 (565)
T 4f4h_A 286 ALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAAD-MARRVGVRYDEIAIA 364 (565)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCTTCCHHHHHHHHH-HHHHHTCEEEECCCH
T ss_pred HHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCCccEEEEeccccccccchHHHHHH-HHHHhCCceeeeecc
Confidence 334456666543 36899999999999999999999998 89999999988887777777776 899999999999998
Q ss_pred hHHH---HhhcCCCC--cc--cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc
Q 039743 289 DQFL---SKLKGVID--PE--TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361 (531)
Q Consensus 289 ~~f~---~~l~~~~~--p~--~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik 361 (531)
+.+. ..+..... ++ ....+-.+.+..+++.+|.+.| .|+.||. |..|. ..|+ .
T Consensus 365 ~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g--------~lvlgTg--n~sE~--a~Gy--------~ 424 (565)
T 4f4h_A 365 PMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFG--------SIVLTTG--NKSEM--AVGY--------C 424 (565)
T ss_dssp HHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHC--------CEEEECC--CHHHH--HHTC--------S
T ss_pred hHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcC--------CcccCCC--chhhH--hhcc--------c
Confidence 6542 33322111 11 1112333344457777777765 4777774 44442 1233 5
Q ss_pred cccccCCCCcccccceecccccCCHHHHHHHHHHcC----------CCccccccCCCCCCCccccccCCCCcchHHHHHh
Q 039743 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN----------VPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILR 431 (531)
Q Consensus 362 t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg----------lp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~ 431 (531)
|++++++- .+.|+.+++|.+|+++++.++ +|+.++.+.|+++ | .+++.|++.| -.++
T Consensus 425 T~~Gd~~~-------~~~pi~~l~Kt~v~~l~~~~~~~~~~~~~~~ip~~i~~~~psae--L---~~~Q~ded~l-~~Y~ 491 (565)
T 4f4h_A 425 TLYGDMAG-------GFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAE--L---RENQTDQDSL-PPYD 491 (565)
T ss_dssp CTTTTTCS-------SEETTTTCCHHHHHHHHHHHHHTCCTTCCCSSCHHHHHC--------------------C-CCHH
T ss_pred cccCCccc-------CchhccCccHHHHHHHHHHHhhhccccCcccChHHHcCCCCCcC--c---CCCCCCcccC-CCHH
Confidence 66776555 789999999999999999988 8988888878765 3 3689999888 4788
Q ss_pred hhhHHHHH
Q 039743 432 QVDEIFIQ 439 (531)
Q Consensus 432 ~~d~~~~~ 439 (531)
..|.++..
T Consensus 492 ~lD~~l~~ 499 (565)
T 4f4h_A 492 VLDAIMRM 499 (565)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877644
No 64
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.53 E-value=3e-14 Score=144.59 Aligned_cols=177 Identities=12% Similarity=-0.002 Sum_probs=112.5
Q ss_pred hhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHh---CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 210 LDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 210 ~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~---g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
..+.++.|++.+...++++|++|||+||+|+++++.+++ +.++.++|+|+|+..++..+.+. .+|+++|++++++.
T Consensus 32 e~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et~~~v~-~~~~~~gi~l~v~~ 110 (325)
T 1zun_A 32 EAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRD-QMVEEMGLDLITHI 110 (325)
T ss_dssp HHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHH-HHHHTTTCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHHHHHHH-HHHHHcCCCEEEEe
Confidence 344556666666556789999999999999999999986 35789999999998765555554 48999999999998
Q ss_pred CchHHHHhhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccc
Q 039743 287 ATDQFLSKLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHN 365 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~ 365 (531)
.+..+. .+.......++.||..+ ...+.+.+++.| ++.+++|++.+|...+.. . ..+...-.
T Consensus 111 ~~~~~~---~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g------~~~i~tG~R~Des~~Ra~-~-------~~~~~r~~ 173 (325)
T 1zun_A 111 NPDGVA---QGINPFTHGSAKHTDIMKTEGLKQALDKHG------FDAAFGGARRDEEKSRAK-E-------RVYSFRDS 173 (325)
T ss_dssp C-----------------CCHHHHHHTHHHHHHHHHHHT------CSEEECCCCTTSSGGGGG-C-------CSEEEECT
T ss_pred CchHHh---cCCCccccChHHHHHHHHHHHHHHHHHHcC------CCEEEEecccchhhhhhc-c-------cceecccc
Confidence 764321 12211111222344332 235666666666 789999999987543211 0 00100000
Q ss_pred cCCCCcc---------------c-ccceecccccCCHHHHHHHHHHcCCCccccc
Q 039743 366 VGGLPKD---------------M-KLKLIEPLKLLFKDEVRQLGRILNVPEQFLK 404 (531)
Q Consensus 366 ~~~l~~~---------------~-~~~ii~PL~~l~K~eVr~la~~lglp~~~~~ 404 (531)
.++.... . ....++||.+++++||.+|++..|||..-++
T Consensus 174 ~~~~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~LY 228 (325)
T 1zun_A 174 KHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLY 228 (325)
T ss_dssp TCCBCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCC
T ss_pred ccccCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchhh
Confidence 0011100 0 1335899999999999999999999975554
No 65
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.53 E-value=5.9e-14 Score=163.49 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=116.6
Q ss_pred CEEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCC---ChhccccCCCCEEEEcCCCCCCCCCCCC--C-----Ch---H
Q 039743 6 ELVLILDYGSQY-THLITRRIRSLSILSLCLSGTC---SLDDITAKNPRVVILSGGPHSVHSPDAP--A-----FP---A 71 (531)
Q Consensus 6 ~~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~---~~~~~~~~~~dgiIlsGGp~s~~~~~~~--~-----~~---~ 71 (531)
++|+||||++++ ...++++++.+|+.+++++.+. ..+. ..++|+||||||.+.-.....- + .. .
T Consensus 1048 pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~--l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~ 1125 (1303)
T 3ugj_A 1048 PKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIG--LGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVR 1125 (1303)
T ss_dssp CEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCC--GGGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHH
T ss_pred CEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCccc--HhhCCEEEECCCCcchhhhccchhHHHHHHhchhHH
Confidence 689999996666 5889999999999999886421 1122 3568999999997621111100 0 11 1
Q ss_pred HHHHH-HHhCCCcEEEeeHHHHHHHHH---cCCE-----EeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeec
Q 039743 72 GFLEW-ALSNGVYVLGICYGLQLMVQK---LDGV-----VKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 72 ~l~~~-~~~~~iPvLGIC~G~Qlla~~---~GG~-----v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H 139 (531)
+.++. +.++++|+||||+|||+|+++ +.|. +.++....| -|..+++.. .+++++++. ...+.+|.+|
T Consensus 1126 ~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~~~s~~~~~~~-g~~~~i~vaH 1204 (1303)
T 3ugj_A 1126 DEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMV-GSQMPIAVSH 1204 (1303)
T ss_dssp HHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECCCSCGGGTTCT-TCEEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECCCCChhhhccC-CCEEeeeeEe
Confidence 23333 345799999999999999985 3454 666654444 355555553 468899886 3458899999
Q ss_pred cCccccCCC----------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 140 GDEAVVLPD----------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 140 ~~~v~~lp~----------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
++.-...++ |..++-. ++++ .|++|.+++++++|++.|||+..
T Consensus 1205 gEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Grvlg~MpHPEr~~ 1273 (1303)
T 3ugj_A 1205 GEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERVF 1273 (1303)
T ss_dssp SSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSSEEEESSBGGGSS
T ss_pred CCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCCEEEEcCChHHcc
Confidence 866432221 2222222 2333 49999999999999999999864
No 66
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8.3e-14 Score=137.33 Aligned_cols=162 Identities=15% Similarity=0.028 Sum_probs=108.5
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhC--CcEEEEEEeCCCCChhHHHHHHHHHHHhCCC----cEEEEECch-----HHHH
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIG--DRLHCVFVDNGLLRYKERERVMDTFEKDLHL----PVTCVDATD-----QFLS 293 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g--~~v~~v~id~g~~~~~e~~~~~~~la~~lgi----~~~vvd~~~-----~f~~ 293 (531)
++++|++|||+||+|+++++.++.+ .++.++|+|+|...++..+.+. .+|+++|+ +++++..+. .+..
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg~~~~et~~~v~-~~~~~~gl~~~~~l~v~~~~~~~~~~~~~~ 120 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKN-EIEKKYYQPKNQTIHVYKPDGCESEADFAS 120 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHH-HHHHHHTGGGTCCCEEECSTTCSSHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCCCCCHHHHHHHH-HHHHHhCCCCCCCeEEEecCCccCHHHHHH
Confidence 5899999999999999999999855 4899999999998776555554 48999999 999987652 2221
Q ss_pred hhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 294 KLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 294 ~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
..|..-++..+..||..+ ..-+.+.+++.| .+.+++|++.+|... +.+ ...+.. ...
T Consensus 121 -~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g------~~~~~tG~R~dds~~-----R~~---~~~~~~-------~~~ 178 (261)
T 2oq2_A 121 -KYGDFLWEKDDDKYDYLAKVEPAHRAYKELH------ISAVFTGRRKSQGSA-----RSQ---LSIIEI-------DEL 178 (261)
T ss_dssp -HHCTTHHHHCHHHHHHHHTHHHHHHHHHHTT------CSEEECCCCGGGCGG-----GGG---CCSEEE-------ETT
T ss_pred -HhCCCccccChHHHHHHHhHHHHHHHHHHcC------CCEEEEeccccchHH-----Hcc---CCceee-------cCC
Confidence 112211111112233221 234566666666 789999999888532 110 000000 000
Q ss_pred cccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 MKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 ~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+...++||.+++++||.+|.+..|||..-++.+=|+
T Consensus 179 ~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~pLy~~Gy~ 215 (261)
T 2oq2_A 179 NGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYR 215 (261)
T ss_dssp TTEEEECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCS
T ss_pred CCeEEEechHhCCHHHHHHHHHHcCCCCCchhhCCCC
Confidence 1234699999999999999999999998666666554
No 67
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.49 E-value=1.4e-14 Score=145.92 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=91.5
Q ss_pred cCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhC-------CCcEEEEE-CchHHHH
Q 039743 222 GLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDL-------HLPVTCVD-ATDQFLS 293 (531)
Q Consensus 222 ~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~l-------gi~~~vvd-~~~~f~~ 293 (531)
+..+|+++++|| +||+|+++++.+. |.+++++|++++. ...+.+.+ +|+.| ++++++++ +++.+
T Consensus 177 g~~~kvlvllSG-vDS~vaa~ll~~~-G~~v~~v~~~~~~---~~~~~a~~-~a~~l~~~~~~~~i~~~vv~~~~~~~-- 248 (307)
T 1vbk_A 177 GTEGRMIGILHD-ELSALAIFLMMKR-GVEVIPVYIGKDD---KNLEKVRS-LWNLLKRYSYGSKGFLVVAESFDRVL-- 248 (307)
T ss_dssp TTTCEEEEECSS-HHHHHHHHHHHHB-TCEEEEEEESCSS---HHHHHHHH-HHHHHHTTCTTSCCCCEEESSHHHHH--
T ss_pred CCCCcEEEEEeC-CcHHHHHHHHHhC-CCeEEEEEEEECH---HHHHHHHH-HHHHHhhhccCCCCcEEEeCCCHHHH--
Confidence 345699999999 9999999999997 9999999999543 33444444 67766 78888887 54322
Q ss_pred hhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 294 KLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 294 ~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
++|+++| +++|++||+..|... +++. +..+....
T Consensus 249 ------------------------~~A~~~g------a~~I~tG~~~~~~~~------------qt~~----l~~~~~~~ 282 (307)
T 1vbk_A 249 ------------------------KLIRDFG------VKGVIKGLRPNDLNS------------EVSE----ITEDFKMF 282 (307)
T ss_dssp ------------------------HHHHHHT------CCEEECCCCGGGCCT------------TCHH----HHHHHHHC
T ss_pred ------------------------HHHHHcC------CCEEEECcccchhcc------------ccHH----HhhhccCc
Confidence 6677777 899999998877531 1111 11122223
Q ss_pred ccceecccccCCHHHHHHHHHHcCC
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNV 398 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lgl 398 (531)
...+++||.+++|+||+++|+++|+
T Consensus 283 ~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 283 PVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp SSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred CCeEEEccCCCCHHHHHHHHHHcCC
Confidence 4579999999999999999999986
No 68
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.31 E-value=7e-12 Score=124.46 Aligned_cols=165 Identities=12% Similarity=0.124 Sum_probs=105.9
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH-HHHhh--cCCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ-FLSKL--KGVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~-f~~~l--~~~~~- 300 (531)
++++|++| |+||+|+++++.++ +.++.++|+|+|...++..+.+.+ +|+++|++++++..+.. +.... .+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~-~~~i~vv~iDtg~~~~et~~~v~~-~~~~~gi~l~v~~~~~~~~~~~~~~~g~~~~ 131 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL-NRNVKVFSLDTGRLHPETYRFIDQ-VREHYGIAIDVLSPDPRLLEPLVKEKGLFSF 131 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH-CTTCCEEEECCSCCCHHHHHHHHH-HHHHHTCCCEEECCCHHHHHHHHHHHCSCHH
T ss_pred CCEEEEee-cHHHHHHHHHHHHh-CCCceEEEEeCCCCCHHHHHHHHH-HHHHHCCeEEEEeCCccCHHHHHHHhCCCCc
Confidence 68999999 99999999999997 888999999999987665555554 89999999999877632 11111 12210
Q ss_pred cccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 301 PETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 301 p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
.+..++.||..+. +-+.+..+ + .+.+++|+..+|..++ +++ ...+....+.. . ...+...++
T Consensus 132 ~~~~~~~cc~~~K~~pl~r~l~--~------~~~~itG~r~dds~~~----R~~---~~~~~~d~~~~-~-~~~g~~~i~ 194 (275)
T 2goy_A 132 YRDGHGECCGIRKIEPLKRKLA--G------VRAWATGQRRDQSPGT----RSQ---VAVLEIDGAFS-T-PEKPLYKFN 194 (275)
T ss_dssp HHHCTHHHHHHHTHHHHHHHHH--T------CSEEECCCCGGGTTSC----SCC---CCSEEECTTTC-C-SSSCCEEEC
T ss_pred cccCHHHHHHHHHHHHHHHHHH--h------cCchhcCchhhhhhhh----hhh---Ccccccccccc-c-CCCCeEEEe
Confidence 0111223443322 22333322 2 5689999988875221 110 00111000000 0 012345899
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++++||.+|+++.|||..-++.+=|+
T Consensus 195 PL~~wt~~dV~~Yi~~~~lp~~~Ly~~Gy~ 224 (275)
T 2goy_A 195 PLSSMTSEEVWGYIRMLELPYNSLHERGYI 224 (275)
T ss_dssp TTTTCCHHHHHHHHHHTTCCCCGGGGGTCS
T ss_pred chHhCCHHHHHHHHHHhCCCCChHHHcCCC
Confidence 999999999999999999998777776555
No 69
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.2e-10 Score=117.05 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=100.7
Q ss_pred cceeeccCCCCCHHHHHHHHHHHh---------------------CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 225 DHVICALSGGVDSTVAATLVHKAI---------------------GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~---------------------g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
++++|++|||+||+|+++|+.+++ +.++.++|+|+|...++..+.+.+ +++++|++++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~-~~~~ygl~l~ 132 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLE-TSERYCLSLY 132 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHH-HHHHTTEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHH-HHHHcCCCEE
Confidence 589999999999999999999874 357899999999987766655554 8999999998
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++..+..+ ...+.+.+.+.++... ....+++|+..+|-... .- .....+
T Consensus 133 v~~~~~~~-----------------~~~l~~~~~~~~k~~p-----~~~aii~G~Rrdds~~r----~l----~~~~~~- 181 (306)
T 2wsi_A 133 ESQRQSGA-----------------SVNMADAFRDFIKIYP-----ETEAIVIGIRHTDPFGE----AL----KPIQRT- 181 (306)
T ss_dssp ECCC----------------------CCHHHHHHHHHHHCT-----TCCEEECCCCCCSSSCC----CC----CSEEEC-
T ss_pred EEeCCccc-----------------cccHHHHHHHHHhhCC-----CCcEEEEEEeccccccc----cc----Cceecc-
Confidence 87654211 0122233334444321 26789999999985321 00 000001
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+.+ .+-.+.||.++++.||..+.+..|||..-++.+=|+
T Consensus 182 --d~~~p---~~~ri~PL~dWt~~DVw~Yi~~~~lpy~pLYd~GY~ 222 (306)
T 2wsi_A 182 --DSNWP---DFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFT 222 (306)
T ss_dssp --CTTSC---SCEEECTTTTCCHHHHHHHHHHHCCCBCHHHHTTCS
T ss_pred --CCCCC---CcEEEeChHHCCHHHHHHHHHHcCCCCChhHhcCCC
Confidence 11111 234589999999999999999999998666666554
No 70
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.54 E-value=1.3e-07 Score=91.01 Aligned_cols=155 Identities=17% Similarity=0.074 Sum_probs=93.3
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC------ChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL------RYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGV 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~------~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~ 298 (531)
.|+++++|||+||+++++++.+. |.+|.++++..+.. ...+.+.+.+ .|+.+|||+++++++..
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~-G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~-~A~~LGIpl~~v~~~g~-------- 74 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN-RFSVKFLVTMVSENEESYMYHTINANLTDL-QARALGIPLVKGFTQGE-------- 74 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEEECC--------CCSSSHHHH-HHHHHTCCEEEEEC-----------
T ss_pred CEEEEEecCcHHHHHHHHHHHHc-CCeEEEEEEEcCCCCCccccCCccHHHHHH-HHHHcCCCEEEEECCCC--------
Confidence 47999999999999999999887 99999998766542 1122334444 79999999999998631
Q ss_pred CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 299 IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 299 ~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
.+. . .+-+.+..++++ .+.++.|.+..+-.-+ +. - .+....+++.+
T Consensus 75 --~~~-------e-~e~l~~~l~~~~------i~~vv~Gdi~s~yqr~--------------r~-e---~vc~~~gl~~~ 120 (237)
T 3rjz_A 75 --KEK-------E-VEDLKRVLSGLK------IQGIVAGALASKYQRK--------------RI-E---KVAKELGLEVY 120 (237)
T ss_dssp ------------C-HHHHHHHHTTSC------CSEEECC---CCSHHH--------------HH-H---HHHHHTTCEEE
T ss_pred --chH-------H-HHHHHHHHHhcC------CcEEEECCcchHHHHH--------------HH-H---HHHHHcCCEEE
Confidence 110 0 011222223334 7889988876432100 00 0 01122356789
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCC-CcchH
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDV-TEGNS 426 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~v-t~~~l 426 (531)
.||=.....++-+-.-..|+..-++.-. ..+|--.++|.. +++-+
T Consensus 121 ~PLW~~d~~~Ll~e~i~~G~~aiiv~v~---~~gL~~~~lG~~l~~~~~ 166 (237)
T 3rjz_A 121 TPAWGRDAKEYMRELLNLGFKIMVVGVS---AYGLDESWLGRILDESAL 166 (237)
T ss_dssp CSSSSCCHHHHHHHHHHTTCEEEEEEEE---STTCCGGGTTCBCCHHHH
T ss_pred ccccCCCHHHHHHHHHHCCCEEEEEEEe---cCCCChHHCCCccCHHHH
Confidence 9998888888877777889875444322 234555667653 44434
No 71
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.52 E-value=1.3e-08 Score=98.08 Aligned_cols=90 Identities=12% Similarity=0.242 Sum_probs=63.8
Q ss_pred CEEEEEeCCC------CcHHHHHHHHHHCCCEEEEEeCCCCh-hccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHH
Q 039743 6 ELVLILDYGS------QYTHLITRRIRSLSILSLCLSGTCSL-DDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEW 76 (531)
Q Consensus 6 ~~I~IlD~G~------~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~ 76 (531)
++|+|||+++ .|.+++.++++++|+.+.++....+. +.+ .+.|+|+++||.....-.. ...+ .+.++.
T Consensus 32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l--~~ad~I~lpGG~~~~~~~~l~~~gl-~~~l~~ 108 (229)
T 1fy2_A 32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAI--EKAEIIIVGGGNTFQLLKESRERGL-LAPMAD 108 (229)
T ss_dssp CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHH--HHCSEEEECCSCHHHHHHHHHHTTC-HHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHH--hcCCEEEECCCcHHHHHHHHHHCCh-HHHHHH
Confidence 6899999997 78889999999999987765322222 333 4579999999865211100 0122 345555
Q ss_pred HHhCCCcEEEeeHHHHHHHHHc
Q 039743 77 ALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
+.++++|++|+|.|||+|+...
T Consensus 109 ~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 109 RVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHcCCEEEEECHHHHhhcccc
Confidence 5677999999999999998743
No 72
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.46 E-value=2.6e-06 Score=84.42 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=93.2
Q ss_pred cceeeccCCCCCHHHHHHHHHHHh--------------------C-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 225 DHVICALSGGVDSTVAATLVHKAI--------------------G-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~--------------------g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+++++++|||+||+|+++|+.+++ + ..+-.+|+|+|...++-.+-+. .+++++|++++
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d-~~~~~ygL~L~ 137 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIE-ETSLRYSLSLY 137 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHH-HHHHHTTEEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHH-HHHHHhCCcEE
Confidence 579999999999999999999875 1 4688999999998775555544 48899999877
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+..... . +..+ ..||+ +.+.. .+.+..++|.-.++ .+ |. ...+...
T Consensus 138 v~~p~~---------~-~~~~-~~cc~--------~~K~~-----P~~~AwitG~RR~e--~~----Ra----~l~~~e~ 183 (308)
T 3fwk_A 138 ESDRDK---------C-ETMA-EAFET--------FLQVF-----PETKAIVIGIRHTD--PF----GE----HLKPIQK 183 (308)
T ss_dssp ECCTTS---------C-CCHH-HHHHH--------HHHHC-----TTCCEEECCCCTTS--TT----CT----TCCSEEE
T ss_pred EeCCCC---------C-HHHH-HHHHH--------HHHhC-----CCCCEEEEEeecCC--cc----cC----CCCeeec
Confidence 764421 0 1111 12222 11111 12678889985553 11 11 0111111
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+ .+. .++--+.||.+++..||.+|.+..+||..-++.+=|+
T Consensus 184 ~d-~~w---~~~iKVnPL~dWT~~DVW~YI~~~~LPynpLYd~GY~ 225 (308)
T 3fwk_A 184 TD-ANW---PDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFT 225 (308)
T ss_dssp CC-TTS---CSCEEECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCS
T ss_pred cC-CCC---CCeEEEechhhCCHHHHHHHHHHcCCCCCcHHhcCCC
Confidence 10 000 1223578999999999999999999998878877666
No 73
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.34 E-value=1.5e-07 Score=89.00 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=62.8
Q ss_pred CEEEEEeCCCC------cHHHHHHHHHHCCCEEEEEeCCC-Chhcc--ccCCCCEEEEcCCCCCCCCCC-CCCChHHHHH
Q 039743 6 ELVLILDYGSQ------YTHLITRRIRSLSILSLCLSGTC-SLDDI--TAKNPRVVILSGGPHSVHSPD-APAFPAGFLE 75 (531)
Q Consensus 6 ~~I~IlD~G~~------~~~~i~r~l~~~G~~~~v~~~~~-~~~~~--~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~ 75 (531)
++|++|++++. |.+++.++++++|+.++++.... +.++. ...+.|+|+++||.....-.. ...-..+.++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~~gl~~~l~ 107 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLIL 107 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHHHTHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHHCChHHHHH
Confidence 68999999886 78899999999999888774322 22221 135679999999754210000 0001134566
Q ss_pred HHHhCCCcEEEeeHHHHHHHH
Q 039743 76 WALSNGVYVLGICYGLQLMVQ 96 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~ 96 (531)
.+.++|+|++|||.|||+++.
T Consensus 108 ~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 108 EEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp HHHHTTCEEEEETHHHHTTSS
T ss_pred HHHHcCCeEEEECHHHHHhcc
Confidence 667789999999999999976
No 74
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.34 E-value=3.7e-07 Score=99.02 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCC-------------cEEEEEEeCCCCChhHHHHHHHHHHHh
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGD-------------RLHCVFVDNGLLRYKERERVMDTFEKD 277 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~-------------~v~~v~id~g~~~~~e~~~~~~~la~~ 277 (531)
+.+.+.++..+..+.+|.++||||+||+++++++++..+. ++.++++... ...|.+.+.+ +|+.
T Consensus 213 ~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~--~~~E~~~A~~-vA~~ 289 (553)
T 1ct9_A 213 QALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP--GSPDLKAAQE-VANH 289 (553)
T ss_dssp HHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST--TCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC--CCcHHHHHHH-HHHH
Confidence 3344455555555678999999999999999999987543 2777777542 2357777765 8999
Q ss_pred CCCcEEEEECchH-HHHhhcCC----CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 278 LHLPVTCVDATDQ-FLSKLKGV----IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 278 lgi~~~vvd~~~~-f~~~l~~~----~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+|++|++++++.. +.+.+..+ ..|.. .++.+....-.+.+.|++.| ...+++|+..|++.
T Consensus 290 lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~l~~~a~~~g------~~vvLsG~GaDElf 354 (553)
T 1ct9_A 290 LGTVHHEIHFTVQEGLDAIRDVIYHIETYDV-TTIRASTPMYLMSRKIKAMG------IKMVLSGEGSDEVF 354 (553)
T ss_dssp HTCEEEEEECCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHTT------CCEEECCTTHHHHH
T ss_pred hCCCCEEEECCHHHHHHHHHHHHHHhcCCCc-ccchHHHHHHHHHHHHHHcC------CeEEEECCCchhcc
Confidence 9999999999853 32322111 11211 00111111224455566666 89999999887765
No 75
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.26 E-value=3.1e-07 Score=98.72 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=56.6
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
+.++..+..+.++.++||||+||+++++++++.. .++.++++.... .+|.+.+.+ +|+.+|++|++++++..
T Consensus 232 ~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~-~~v~tfti~~~~--~~E~~~A~~-vA~~lg~~h~~i~i~~~ 303 (513)
T 1jgt_A 232 KAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA-GELDTVSMGTDT--SNEFREARA-VVDHLRTRHREITIPTT 303 (513)
T ss_dssp HHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH-SSCEEEEEECSS--CCCHHHHHH-HHHHHTCEEEEEECCHH
T ss_pred HHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC-CCceEEEcCCCC--CCHHHHHHH-HHHHhCCCcEEEECCHH
Confidence 4444445446789999999999999999999874 667888876532 467777766 89999999999999853
No 76
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.16 E-value=6.1e-07 Score=96.26 Aligned_cols=73 Identities=19% Similarity=0.131 Sum_probs=57.3
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
.+.++..+..+.++.++||||+||+++++++++. +.++.++++... ..+|.+.+.+ +|+.+|++|++++++..
T Consensus 228 ~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~-~~~~~~~t~~~~--~~~E~~~A~~-vA~~lg~~h~~i~~~~~ 300 (503)
T 1q15_A 228 NAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRH-FKKLNTYSIGTE--LSNEFEFSQQ-VADALGTHHQMKILSET 300 (503)
T ss_dssp HHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTT-CSEEEEEEEEET--TBCCHHHHHH-HHHHHTCEEEEEEECHH
T ss_pred HHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHh-CCCcEEEEEeCC--CccHHHHHHH-HHHHhCCceEEEECCHH
Confidence 3445555554678999999999999999999886 567888888654 2467777766 89999999999999853
No 77
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.98 E-value=9.7e-06 Score=75.64 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=60.5
Q ss_pred CCEEEEEeCC-CCc--HHHHHHHHHHCCCEEEEEeCCCCh-----------------hccccCCCCEEEEcCCCCCCCCC
Q 039743 5 PELVLILDYG-SQY--THLITRRIRSLSILSLCLSGTCSL-----------------DDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 5 ~~~I~IlD~G-~~~--~~~i~r~l~~~G~~~~v~~~~~~~-----------------~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
+.+|+|+-+- ..- .......++++|+++.++..+... ++....++|+||+|||++ +.+.
T Consensus 23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~-~~~l 101 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS-PDYL 101 (193)
T ss_dssp CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH-HHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC-HHHh
Confidence 4679988552 222 234678899999999887654321 111124689999999954 2111
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
....-..++++.+.++++||.|||.|.|+|+.+
T Consensus 102 ~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 102 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 001112356677777899999999999999986
No 78
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.87 E-value=1.5e-05 Score=73.27 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEeCCCCc--HH--HHHHHHHHCCCEEEEEeCCC---------------ChhccccCCCCEEEEcCCCCCC
Q 039743 1 MENKPELVLILDYGSQY--TH--LITRRIRSLSILSLCLSGTC---------------SLDDITAKNPRVVILSGGPHSV 61 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~--~~--~i~r~l~~~G~~~~v~~~~~---------------~~~~~~~~~~dgiIlsGGp~s~ 61 (531)
|.++.++|+|+ .+.+| .. .-.+.|+++|+++.+...+. .++++...+||+|++|||++..
T Consensus 4 m~~t~~~v~il-~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~ 82 (177)
T 4hcj_A 4 MGKTNNILYVM-SGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI 82 (177)
T ss_dssp -CCCCEEEEEC-CSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG
T ss_pred cccCCCEEEEE-CCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH
Confidence 33333445555 33334 22 24488999999998865432 2233334578999999997632
Q ss_pred CCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 62 HSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-... .-..++++.+.++++||.+||.|-++|+.+
T Consensus 83 ~l~~~-~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 83 TLWDD-WRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp GGTTC-HHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHhhC-HHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 11111 112367777788899999999999999985
No 79
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.35 E-value=0.00017 Score=65.32 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred CEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
++|+|+=+ |..-.. .....++..|+++.++..+.. .+++....+|+||+|||++...-.. .
T Consensus 3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~-~ 81 (168)
T 3l18_A 3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRL-N 81 (168)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT-C
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhcc-C
Confidence 46888744 322222 355888999999888765321 2222223589999999974211011 1
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-..++++.+.++++||.+||-|.++|+.+
T Consensus 82 ~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 82 EKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 112356677778899999999999999985
No 80
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=97.32 E-value=0.00072 Score=62.38 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCEEEEEeC-CCCc--HHHHHHHHHH-CCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQY--THLITRRIRS-LSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 5 ~~~I~IlD~-G~~~--~~~i~r~l~~-~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~ 65 (531)
|++|+|+=+ |..- .......+++ .|+++.++..+.. +++....++|+||+|||.+... ..
T Consensus 1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~-~~ 79 (188)
T 2fex_A 1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEK-GT 79 (188)
T ss_dssp CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHH-TC
T ss_pred CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccc-cc
Confidence 357888733 2111 2235678888 8999888765421 1122123689999999975211 11
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+. ..++++.+.++++||.+||-|.++|+.+
T Consensus 80 ~~~-l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 80 AAD-LGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCC-CHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cHH-HHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 122 3467777788899999999999999985
No 81
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.32 E-value=0.00011 Score=68.08 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=59.7
Q ss_pred CCEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCC--C--------------hhccccCCCCEEEEcCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTC--S--------------LDDITAKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~--~--------------~~~~~~~~~dgiIlsGGp~s~~~~~ 65 (531)
+++|+|+=+ |..-.. .....++++|+++.++..+. + ++++....+|+||+|||........
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 84 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMG 84 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhh
Confidence 357887744 322222 24589999999999886543 1 2222234689999999943111000
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
...-..++++.+.++++||.+||-|.++|+.+
T Consensus 85 ~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 85 ESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 00112356677778899999999999999985
No 82
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=97.31 E-value=0.00057 Score=65.92 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=60.1
Q ss_pred CEEEEEeCC----CCc--HH--HHHHHHHHCCCEEEEEeCCCC---------------------------------hhcc
Q 039743 6 ELVLILDYG----SQY--TH--LITRRIRSLSILSLCLSGTCS---------------------------------LDDI 44 (531)
Q Consensus 6 ~~I~IlD~G----~~~--~~--~i~r~l~~~G~~~~v~~~~~~---------------------------------~~~~ 44 (531)
++|+|+=.| .++ .. .....|+++|+++.++..+.. ++++
T Consensus 24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv 103 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI 103 (242)
T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC
T ss_pred CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHC
Confidence 589988542 223 22 245889999999988765321 1122
Q ss_pred ccCCCCEEEEcCCCCCC-----C-CC--CCCCC---hHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 45 TAKNPRVVILSGGPHSV-----H-SP--DAPAF---PAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 45 ~~~~~dgiIlsGGp~s~-----~-~~--~~~~~---~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
...++|+||||||.+.. + .. +.... ..++++.+.++++||.+||-|.++|+.+-
T Consensus 104 ~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred CcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 23468999999997521 1 10 00111 23566777788999999999999999874
No 83
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=97.30 E-value=0.0007 Score=63.67 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCEEEEEeC-CCCc--HHHHHHHHHHC-CCEEEEEeCCCC--------------hhccccCCCCEEEEcCCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQY--THLITRRIRSL-SILSLCLSGTCS--------------LDDITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 5 ~~~I~IlD~-G~~~--~~~i~r~l~~~-G~~~~v~~~~~~--------------~~~~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
|++|+|+=+ |.+- ....+..+++. |+++.++..+.. ++++ ..++|.||+|||.+... .
T Consensus 3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~--~- 78 (206)
T 3f5d_A 3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSN--D- 78 (206)
T ss_dssp CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCC--C-
T ss_pred ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhh--c-
Confidence 667888833 2111 22467788887 888877654321 2222 23689999999985322 1
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.++++||.+||-|.++|+.+
T Consensus 79 ~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 79 NKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 1112356677777899999999999999985
No 84
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.30 E-value=0.0003 Score=67.43 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=61.9
Q ss_pred CCEEEEEeCC----CCc--HHH--HHHHHHHCCCEEEEEeCCCC---------------------------------hhc
Q 039743 5 PELVLILDYG----SQY--THL--ITRRIRSLSILSLCLSGTCS---------------------------------LDD 43 (531)
Q Consensus 5 ~~~I~IlD~G----~~~--~~~--i~r~l~~~G~~~~v~~~~~~---------------------------------~~~ 43 (531)
|++|+|+=++ .++ ... ....|+++|+++.++..+.. +++
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~ 85 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 85 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHH
Confidence 4679999662 233 222 34789999999988764321 111
Q ss_pred cccCCCCEEEEcCCCCC---CCCC-----C--CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 44 ITAKNPRVVILSGGPHS---VHSP-----D--APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 44 ~~~~~~dgiIlsGGp~s---~~~~-----~--~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
+...++|+||+|||.+. ..+. . ...-..++++.+.++++||.+||-|-++|+.++.
T Consensus 86 ~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 86 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred cCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 11246899999999753 1110 0 0011235677777889999999999999999855
No 85
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.29 E-value=0.00013 Score=68.12 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCEEEEEeC-CCCcH--HHHHHHHHHCCCEEEEEeCCCC----------------hhcc-ccCCCCEEEEcCCCCCCCCC
Q 039743 5 PELVLILDY-GSQYT--HLITRRIRSLSILSLCLSGTCS----------------LDDI-TAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~--~~i~r~l~~~G~~~~v~~~~~~----------------~~~~-~~~~~dgiIlsGGp~s~~~~ 64 (531)
+++|+|+=+ |.+-. ......++++|+.+.++..+.. +++. ...++|+||+|||+....+.
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l 82 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL 82 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHh
Confidence 357888755 33322 2355889999999988765321 1122 12578999999996422110
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
....-..++++.+.++++||.+||-|.++|+.+
T Consensus 83 ~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 83 SESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 000112356677778899999999999999985
No 86
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.28 E-value=0.00032 Score=64.84 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=58.3
Q ss_pred CCEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCCC--------------------hhccccCCCCEEEEcCCCCCC
Q 039743 5 PELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTCS--------------------LDDITAKNPRVVILSGGPHSV 61 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~~--------------------~~~~~~~~~dgiIlsGGp~s~ 61 (531)
+.+|+|+=+ |.+... .....+++.|+++.++..+.. ++++...++|+||++||+...
T Consensus 9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~ 88 (190)
T 2vrn_A 9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP 88 (190)
T ss_dssp TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH
Confidence 357888844 222222 245889999998887754321 111112468999999997422
Q ss_pred CCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 62 HSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+.....-..++++.+.++++||.+||.|.++|+.+
T Consensus 89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 111011112356677778899999999999999985
No 87
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=97.25 E-value=0.00033 Score=66.57 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=60.1
Q ss_pred CCC-CEEEEEeCC---------CCc--H--HHHHHHHHHCCCEEEEEeCCCC-----h----------------------
Q 039743 3 NKP-ELVLILDYG---------SQY--T--HLITRRIRSLSILSLCLSGTCS-----L---------------------- 41 (531)
Q Consensus 3 ~~~-~~I~IlD~G---------~~~--~--~~i~r~l~~~G~~~~v~~~~~~-----~---------------------- 41 (531)
|+| ++|+|+=++ .++ . ......|+++|+++.++..+.. .
T Consensus 2 ~~m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (224)
T 1u9c_A 2 NAMSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTAR 81 (224)
T ss_dssp --CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEE
T ss_pred CCCCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCC
Confidence 455 578888552 223 2 2345788899999988764321 0
Q ss_pred -hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 42 -DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 42 -~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+++....+|+||++||.+...+.....-..++++.+.++++||.+||-|.++|+.+
T Consensus 82 l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 82 LSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp CCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 11112469999999997642111111112366777778899999999999998865
No 88
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=97.22 E-value=0.00015 Score=68.26 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=58.5
Q ss_pred CCCCC-CEEEEEeCC-CCcHH--HHHHHHHHCCCEEEEEeCCC--C--------------hhccccCCCCEEEEcCCCCC
Q 039743 1 MENKP-ELVLILDYG-SQYTH--LITRRIRSLSILSLCLSGTC--S--------------LDDITAKNPRVVILSGGPHS 60 (531)
Q Consensus 1 ~~~~~-~~I~IlD~G-~~~~~--~i~r~l~~~G~~~~v~~~~~--~--------------~~~~~~~~~dgiIlsGGp~s 60 (531)
|+++| ++|+|+=+- ..-.. .....++.+|+++.++..+. + ++++....+|.||++||...
T Consensus 4 ~~~~m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 83 (208)
T 3ot1_A 4 MEQGMSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83 (208)
T ss_dssp -----CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred cccccCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence 56666 478888543 22222 34588999999998876642 1 12221246899999999632
Q ss_pred CCCCCCCCChHHHHHHHHhCCCcEEEeeHHH-HHHHHH
Q 039743 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGL-QLMVQK 97 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~-Qlla~~ 97 (531)
........-..++++.+.++++||.+||-|. .+|+.+
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 1110001112356777778899999999998 888763
No 89
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=97.16 E-value=0.0011 Score=62.56 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCCEEEEEeC-CCCc--HHHHHHHHH--------HCCCEEEEEeCCCC---------------hhccccCCCCEEEEcC
Q 039743 3 NKPELVLILDY-GSQY--THLITRRIR--------SLSILSLCLSGTCS---------------LDDITAKNPRVVILSG 56 (531)
Q Consensus 3 ~~~~~I~IlD~-G~~~--~~~i~r~l~--------~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsG 56 (531)
++|.+|+|+=+ |..- .......++ +.|+++.++..+.. ++++....+|.||+||
T Consensus 3 m~m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpG 82 (212)
T 3efe_A 3 MQTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPG 82 (212)
T ss_dssp --CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECC
T ss_pred CcccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECC
Confidence 34667888733 2221 234567777 56788887654321 1222233799999999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 57 GPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 57 Gp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
|.+... .. ..-..++++.+.++++||.+||-|..+|+.+
T Consensus 83 G~~~~~-~~-~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 83 GTTWSE-EI-HQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CSCTTS-GG-GHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred CCcccc-cc-CHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 975311 11 0112356666677899999999999999985
No 90
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.15 E-value=0.00026 Score=66.49 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=59.0
Q ss_pred CEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCCC------------------hhccccCCCCEEEEcCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTCS------------------LDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~~------------------~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
++|+|+=+ |..-.. .....++++|+++.++..+.. ++++...++|+||+|||...+.+.
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l 82 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF 82 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHh
Confidence 46888754 333322 245789999999988765432 112222578999999996432110
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH-HHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL-QLMVQK 97 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~-Qlla~~ 97 (531)
....-..++++.+.++++||.+||-|. ++|+.+
T Consensus 83 ~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 83 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 001112356677778899999999999 999864
No 91
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=97.11 E-value=0.00028 Score=68.32 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|+++||.+...+-....-..++++.+.++++||.+||.|-++|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 468999999998632211111112467777888999999999999999875
No 92
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=97.10 E-value=0.002 Score=60.27 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEeCCC-CcHH--HHHHHHHHCC------CEEEEEeCCC--------------ChhccccCCCCEEEEcCC
Q 039743 1 MENKPELVLILDYGS-QYTH--LITRRIRSLS------ILSLCLSGTC--------------SLDDITAKNPRVVILSGG 57 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~-~~~~--~i~r~l~~~G------~~~~v~~~~~--------------~~~~~~~~~~dgiIlsGG 57 (531)
|..++.+|+|+=+-+ +-.. .....++.++ +++.++..+. .+++....++|.||+|||
T Consensus 1 ~~~~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG 80 (202)
T 3gra_A 1 MSLAPYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGG 80 (202)
T ss_dssp ----CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECC
T ss_pred CCCCcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCC
Confidence 666677888885532 2211 2345555543 6666655432 112222357899999999
Q ss_pred CCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 58 PHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 58 p~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
...... . .-..++++.+.+++++|.+||-|..+|+.+
T Consensus 81 ~~~~~~-~--~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 81 LRTPLK-Y--PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCCSC-C--TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred Cchhhc-c--HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 864322 1 223466777777899999999999999986
No 93
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=96.91 E-value=0.0041 Score=67.88 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=62.6
Q ss_pred CEEEEE-eCCCCcH----HHHHHHHHHCCCEEEEEeCCC------ChhccccCCCCEEEEcCCCCCCCC----CCCC---
Q 039743 6 ELVLIL-DYGSQYT----HLITRRIRSLSILSLCLSGTC------SLDDITAKNPRVVILSGGPHSVHS----PDAP--- 67 (531)
Q Consensus 6 ~~I~Il-D~G~~~~----~~i~r~l~~~G~~~~v~~~~~------~~~~~~~~~~dgiIlsGGp~s~~~----~~~~--- 67 (531)
.||+|| .-| .+. .....+|++.|+.++++.... ..++.....||+|||+||...... .+..
T Consensus 538 rKVaILvadG-~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~ 616 (688)
T 3ej6_A 538 LRVGVLSTTK-GGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPA 616 (688)
T ss_dssp CEEEEECCSS-SSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCT
T ss_pred CEEEEEccCC-CccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccC
Confidence 479888 223 243 345699999999999986532 233333456999999999764210 0111
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-...+++.+.++++||-.||-|-|+|..+
T Consensus 617 ~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 617 GRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp THHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 112367778888999999999999999875
No 94
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=96.85 E-value=0.00054 Score=66.11 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|+||++||....++.....-..++++.+.++++||.+||-|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 368999999997642211111112367777788899999999999988875
No 95
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.72 E-value=0.0017 Score=61.01 Aligned_cols=95 Identities=9% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCCCCCEEEEEeC-CCCcHH--HHHHHHHHCC-------CEEEEEeCCC---------------ChhccccCCCCEEEEc
Q 039743 1 MENKPELVLILDY-GSQYTH--LITRRIRSLS-------ILSLCLSGTC---------------SLDDITAKNPRVVILS 55 (531)
Q Consensus 1 ~~~~~~~I~IlD~-G~~~~~--~i~r~l~~~G-------~~~~v~~~~~---------------~~~~~~~~~~dgiIls 55 (531)
|++++.+|+|+=+ |.+-.. .....++.++ +++.++..+. .+++ ..++|.||+|
T Consensus 4 ~~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~--~~~~D~livp 81 (209)
T 3er6_A 4 TNKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQS--FDFTNILIIG 81 (209)
T ss_dssp ---CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGG--CSCCSEEEEC
T ss_pred CCCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccc--cCCCCEEEEC
Confidence 4455668888844 322222 2345555543 5666654332 1222 2468999999
Q ss_pred CCCCCCCCC-CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 56 GGPHSVHSP-DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 56 GGp~s~~~~-~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
||.+..... ....-..++++.+.+++++|.+||-|..+|+.+
T Consensus 82 Gg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 82 SIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 997521100 001112356667777899999999999999986
No 96
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.61 E-value=0.0048 Score=56.00 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=46.0
Q ss_pred HCCCEEEEEeCCC----------------Chhcc--ccCCCCEEEEcCC--CCCCCCCC-CCC--ChHHHHHHHHhCCCc
Q 039743 27 SLSILSLCLSGTC----------------SLDDI--TAKNPRVVILSGG--PHSVHSPD-APA--FPAGFLEWALSNGVY 83 (531)
Q Consensus 27 ~~G~~~~v~~~~~----------------~~~~~--~~~~~dgiIlsGG--p~s~~~~~-~~~--~~~~l~~~~~~~~iP 83 (531)
+.|+++.++..+. .+++. ...++|+||+||| ...+.... .+. -..++++.+.++++|
T Consensus 27 ~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~ 106 (175)
T 3cne_A 27 ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKM 106 (175)
T ss_dssp HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCE
T ss_pred eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCE
Confidence 6789888876542 11222 2256899999999 52221100 001 112566677778999
Q ss_pred EEEeeHHHHHHHHH
Q 039743 84 VLGICYGLQLMVQK 97 (531)
Q Consensus 84 vLGIC~G~Qlla~~ 97 (531)
|.+||.|.++|+.+
T Consensus 107 i~aiC~G~~~La~a 120 (175)
T 3cne_A 107 MIGHCAGAMMFDFT 120 (175)
T ss_dssp EEEETTHHHHHHHT
T ss_pred EEEECHHHHHHHHC
Confidence 99999999999985
No 97
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=96.58 E-value=0.0015 Score=63.14 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|++|||.+...+-.......++++.+.++++||.+||-|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 458999999997632111111112467777888899999999999998875
No 98
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=96.36 E-value=0.0024 Score=70.13 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=58.9
Q ss_pred CEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCC
Q 039743 6 ELVLILDYGSQY----THLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 6 ~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
.+|+|| ...++ ......+|+++|+.+.++..... +++.....||+|||+|| +...-..
T Consensus 601 rKVaIL-laDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr~- 677 (753)
T 3ttv_A 601 RVVAIL-LNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIAD- 677 (753)
T ss_dssp CEEEEE-CCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTTT-
T ss_pred CEEEEE-ecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhhh-
Confidence 478888 22333 22456899999999998764321 12222335899999999 3211111
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.++++||-+||-|-++|+.+
T Consensus 678 d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 678 NGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred CHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 1112367777788899999999999999876
No 99
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.33 E-value=0.0059 Score=63.08 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=59.4
Q ss_pred CEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCC-------------------------------hhccccCCCC
Q 039743 6 ELVLILDYGSQY----THLITRRIRSLSILSLCLSGTCS-------------------------------LDDITAKNPR 50 (531)
Q Consensus 6 ~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~-------------------------------~~~~~~~~~d 50 (531)
++|+|+=+ .++ .......|+++|+++.++..+.. +++.....+|
T Consensus 13 ~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 91 (396)
T 3uk7_A 13 RTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYD 91 (396)
T ss_dssp CEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred CeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCC
Confidence 57888843 333 22345889999999988865421 1122224689
Q ss_pred EEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 51 VVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 51 giIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+|+++||.+...... ..-..++++.+.++++||.+||-|.++|+.+
T Consensus 92 ~livpGG~~~~~~~~-~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 92 GLVIPGGRAPEYLAL-TASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp EEEECCBSHHHHHTT-CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred EEEECCCcchhhccc-CHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 999999965211011 1112356677778899999999999999985
No 100
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.22 E-value=0.0063 Score=62.91 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=60.2
Q ss_pred CCCEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCC-------------------------------ChhccccCC
Q 039743 4 KPELVLILDYGSQY----THLITRRIRSLSILSLCLSGTC-------------------------------SLDDITAKN 48 (531)
Q Consensus 4 ~~~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~-------------------------------~~~~~~~~~ 48 (531)
.+.+|+|+=+ .++ .......|+++|+++.++..+. ++++.....
T Consensus 204 ~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 282 (396)
T 3uk7_A 204 ANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSS 282 (396)
T ss_dssp CCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred ccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCccc
Confidence 3467888843 233 2235578899999988875432 122222346
Q ss_pred CCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 49 PRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 49 ~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+|.||+|||.+..+... ..-..++++.+.++++||.+||-|.++|+.+
T Consensus 283 ~D~livpGg~~~~~~~~-~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 283 YDALVIPGGRAPEYLAL-NEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp CSEEEECCBSHHHHHTT-CHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred CCEEEECCCcchhhhcc-CHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 89999999975211011 1112356677778899999999999999985
No 101
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.16 E-value=0.0043 Score=63.33 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=58.8
Q ss_pred CCCEEEEEeCC-CCcHH--HHHHHHHHCCCEEEEEeCCCCh-----------------hccccCCCCEEEEcCCCCCCCC
Q 039743 4 KPELVLILDYG-SQYTH--LITRRIRSLSILSLCLSGTCSL-----------------DDITAKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 4 ~~~~I~IlD~G-~~~~~--~i~r~l~~~G~~~~v~~~~~~~-----------------~~~~~~~~dgiIlsGGp~s~~~ 63 (531)
+|.+|+|+=+- ..-.. .....|+.+|+.+.++..+... +++....+|.||+|||.+.. .
T Consensus 9 ~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~-~ 87 (365)
T 3fse_A 9 GKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPD-K 87 (365)
T ss_dssp --CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHH-H
T ss_pred CceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchh-h
Confidence 35678888442 22222 3558899999998887654211 11112258999999997421 1
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
-....-..++++.+.++++||.+||-|..+|+.+
T Consensus 88 l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 88 MRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp HTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 0011112356677778899999999999999985
No 102
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.03 E-value=0.012 Score=64.37 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=60.9
Q ss_pred CEEEEEeCC-CCc----HHHHHHHHHHCCCEEEEEeCCCC------hhccccCCCCEEEEcCCCCCCCC-----------
Q 039743 6 ELVLILDYG-SQY----THLITRRIRSLSILSLCLSGTCS------LDDITAKNPRVVILSGGPHSVHS----------- 63 (531)
Q Consensus 6 ~~I~IlD~G-~~~----~~~i~r~l~~~G~~~~v~~~~~~------~~~~~~~~~dgiIlsGGp~s~~~----------- 63 (531)
.||+||=.. .++ ...+..+|++.|+.++++..... .++.....||+|||+||..+.+.
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~ 609 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAG 609 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTT
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccc
Confidence 478888331 334 23466899999999999875431 12222456999999999543111
Q ss_pred --CCCC---CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 64 --PDAP---AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 64 --~~~~---~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+.. .-..++++.+.++++||-.||-|-++|..+
T Consensus 610 ~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 610 SGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp SCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 1111 112367777777899999999999999875
No 103
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=95.44 E-value=0.013 Score=56.84 Aligned_cols=90 Identities=12% Similarity=0.186 Sum_probs=55.5
Q ss_pred CEEEEEeCCC-CcHH--HHHHHH-HHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCC-CCCCCCC
Q 039743 6 ELVLILDYGS-QYTH--LITRRI-RSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGP-HSVHSPD 65 (531)
Q Consensus 6 ~~I~IlD~G~-~~~~--~i~r~l-~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp-~s~~~~~ 65 (531)
.+|+|+=|-+ .-.. .....+ +..|+++.++..+.. +++. ...||.||++||. +......
T Consensus 24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~-~~~yD~liVPGG~~g~~~l~~ 102 (253)
T 3ewn_A 24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTC-PRDLTVLFAPGGTDGTLAAAS 102 (253)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTS-CSSCSEEEECCBSHHHHHHTT
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHc-CCCCCEEEECCCccchhhhcc
Confidence 5788885532 2222 234666 466888887764421 1111 1246999999997 4211011
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.+++++|.+||-|..+|+.+
T Consensus 103 -~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 103 -DAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp -CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 1112356666777899999999999999985
No 104
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=95.36 E-value=0.013 Score=64.65 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=60.0
Q ss_pred CEEEEEeC-CCCcH--HHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYT--HLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~~--~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+||=+ |..-. ......|+.+|+.+.++..+.. ++++....+|+|||+||..........
T Consensus 535 rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~ 614 (715)
T 1sy7_A 535 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKN 614 (715)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccC
Confidence 57888844 32222 2355889999999998765421 111112358999999994321110001
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
.-...+++.+.++++||.+||-|..+|+.++|
T Consensus 615 ~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 615 GRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 11235677777889999999999999999854
No 105
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=95.25 E-value=0.014 Score=64.60 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=37.0
Q ss_pred CCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcc
Q 039743 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVR 461 (531)
Q Consensus 421 vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~ 461 (531)
.|.+.| ++||+||++..+.|.+.|+++++||+++||+|+.
T Consensus 584 ~~~~~~-~~lr~~d~~~~~~l~~~~~~~~~~q~~vv~~p~~ 623 (697)
T 2vxo_A 584 LTTGVL-STLRQADFEAHNILRESGYAGKISQMPVILTPLH 623 (697)
T ss_dssp SCHHHH-HHHHHHHHHHHHHHHHTTCGGGCSBCCEEEESCC
T ss_pred cchhHH-HHHHHHHHHHHHHHHhcccceeeeEEEEEEEeee
Confidence 456777 9999999999999999999999999999999975
No 106
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=94.76 E-value=0.012 Score=55.33 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEeC-CCCcHH--HHHHHHHHC--CCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCC
Q 039743 1 MENKPELVLILDY-GSQYTH--LITRRIRSL--SILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHS 60 (531)
Q Consensus 1 ~~~~~~~I~IlD~-G~~~~~--~i~r~l~~~--G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s 60 (531)
|++ +.+|+|+=+ |..-.. .....|+.+ ++.+.++..+.. .++ ...+|.||+|||++.
T Consensus 1 m~~-~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~--~~~~D~livpGG~~~ 77 (211)
T 3mgk_A 1 MSL-SYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRD--ENIEKILFVPGGSGT 77 (211)
T ss_dssp ----CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCC--SSSEEEEEECCSTHH
T ss_pred CCC-ceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhh--CCCCCEEEECCCcch
Confidence 553 357888844 322222 345777776 466666543311 111 123799999999753
Q ss_pred CCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-.. ..-..++++.+.+++++|.+||-|..+|+.+
T Consensus 78 ~~~~~-~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 78 REKVN-DDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HHHTT-CHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred hhhcC-CHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 11001 1112356666677899999999999999984
No 107
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=94.69 E-value=0.022 Score=54.23 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=55.1
Q ss_pred CEEEEEeCC-CCcHH--HHHHHHHH-CCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCC
Q 039743 6 ELVLILDYG-SQYTH--LITRRIRS-LSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 6 ~~I~IlD~G-~~~~~--~i~r~l~~-~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
.+|+|+=|- .+-.. .....++. .|+++.++..+.. +++ ..++|.|+++||++......
T Consensus 6 ~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~--~~~~D~livpGG~g~~~~~~- 82 (231)
T 3noq_A 6 VQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFAD--CPPLDVICIPGGTGVGALME- 82 (231)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTT--CCCCSEEEECCSTTHHHHTT-
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhH--CCcCCEEEECCCCChhhhcc-
Confidence 478888443 22222 24467776 5777777654311 111 23689999999975311011
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.+++++|.+||-|..+|+.+
T Consensus 83 ~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 83 DPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 1112356666777899999999999999975
No 108
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=93.63 E-value=0.044 Score=50.61 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=48.0
Q ss_pred CCCEEEEEeC-CCCcHHH--HHHHHHHCCCEEEEEeCCCC------------------hhccc-----cCCCCEEEEcCC
Q 039743 4 KPELVLILDY-GSQYTHL--ITRRIRSLSILSLCLSGTCS------------------LDDIT-----AKNPRVVILSGG 57 (531)
Q Consensus 4 ~~~~I~IlD~-G~~~~~~--i~r~l~~~G~~~~v~~~~~~------------------~~~~~-----~~~~dgiIlsGG 57 (531)
+|+||+|+=+ |.+-... ....|+++|+.+.++..... ++++. ..+||+||+|||
T Consensus 3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG 82 (194)
T 4gdh_A 3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG 82 (194)
T ss_dssp --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence 4677888733 3332222 34788999987765532111 11111 124799999999
Q ss_pred CCCCCC-CCCCCChHHHHHHHHh-CCCcEEEeeHHHHHH
Q 039743 58 PHSVHS-PDAPAFPAGFLEWALS-NGVYVLGICYGLQLM 94 (531)
Q Consensus 58 p~s~~~-~~~~~~~~~l~~~~~~-~~iPvLGIC~G~Qll 94 (531)
...... ...+. ..++++.+.+ .++|+-.||-|..++
T Consensus 83 ~~~~~~l~~~~~-l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 83 GLGAKTLSTTPF-VQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHHHHHHTCHH-HHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred chhHhHhhhCHH-HHHHHHHhhhcCCceEEeecccccch
Confidence 532111 01111 2244544433 478999999998544
No 109
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=92.41 E-value=0.026 Score=55.77 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=36.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|+|||+||++...+.....-..++++.+.++++||.+||-|-.+|+.+
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 194 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence 468999999997643221111112367777788899999999999987765
No 110
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=91.88 E-value=0.61 Score=39.53 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCCEEEEEeCC---CCcHHHHHHHHHHCCCEEEEEeCCC----------ChhccccCCCCEEEEcCCCCCCCCC-----
Q 039743 3 NKPELVLILDYG---SQYTHLITRRIRSLSILSLCLSGTC----------SLDDITAKNPRVVILSGGPHSVHSP----- 64 (531)
Q Consensus 3 ~~~~~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~~~~~----------~~~~~~~~~~dgiIlsGGp~s~~~~----- 64 (531)
|++..|+|+-.. +.+.+.+.+.|.+.|+.+..+.... +++++ .. +|.+++.=.+..+.+-
T Consensus 2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dl-p~-vDlavi~~p~~~v~~~v~e~~ 79 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVI-EG-VDTVTLYINPQNQLSEYNYIL 79 (122)
T ss_dssp CCCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCC-TT-CCEEEECSCHHHHGGGHHHHH
T ss_pred CCCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHC-CC-CCEEEEEeCHHHHHHHHHHHH
Confidence 567789999443 3567889999999997443332211 11111 12 4544443322210000
Q ss_pred ----C----CC-CChHHHHHHHHhCCCcEEEeeHHHHH
Q 039743 65 ----D----AP-AFPAGFLEWALSNGVYVLGICYGLQL 93 (531)
Q Consensus 65 ----~----~~-~~~~~l~~~~~~~~iPvLGIC~G~Ql 93 (531)
. .+ ...+++.+.+.++|+.++|=|.|+++
T Consensus 80 ~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 80 SLKPKRVIFNPGTENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp HHCCSEEEECTTCCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred hcCCCEEEECCCCChHHHHHHHHHcCCeEECCcCeEEe
Confidence 0 00 11357888899999999999999876
No 111
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=91.31 E-value=0.047 Score=52.15 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCCEEEEEeC-CCCcHH--HHHHHHHHCC--CEEEEEeCCCC---------------hhccccCCCCEEEEcCC-CCCCC
Q 039743 4 KPELVLILDY-GSQYTH--LITRRIRSLS--ILSLCLSGTCS---------------LDDITAKNPRVVILSGG-PHSVH 62 (531)
Q Consensus 4 ~~~~I~IlD~-G~~~~~--~i~r~l~~~G--~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGG-p~s~~ 62 (531)
++.+|+|+=+ |..-.. .....++..+ +++.++. +.. +++ ...+|.||+||| ++..
T Consensus 19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~--~~~~D~liVPGG~~g~~- 94 (236)
T 3bhn_A 19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE--VKEQDVVLITSGYRGIP- 94 (236)
T ss_dssp -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG--GGGCSEEEECCCTTHHH-
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc--ccCCCEEEEcCCccCHh-
Confidence 3457888854 322222 2446676655 5666654 311 111 246899999999 4421
Q ss_pred CCCCCCChHHHHHHH-HhCCC-cEEEeeHHHHHHHHH
Q 039743 63 SPDAPAFPAGFLEWA-LSNGV-YVLGICYGLQLMVQK 97 (531)
Q Consensus 63 ~~~~~~~~~~l~~~~-~~~~i-PvLGIC~G~Qlla~~ 97 (531)
+. ...+.++++. .+++. +|.+||-|..+|+.+
T Consensus 95 ~l---~~~~~l~~~L~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 95 AA---LQDENFMSALKLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp HH---HTCHHHHHHCCCCTTTCEEEEETTHHHHHHHT
T ss_pred hh---ccCHHHHHHHHhCCCCCEEEEEcHHHHHHHHc
Confidence 00 0122333332 23455 999999999999985
No 112
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=89.80 E-value=0.09 Score=51.79 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=58.7
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCC-EEEEEeCCCC----hhcc--ccCCCCEEEEcCCCCCCCCCC-CCCChHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSI-LSLCLSGTCS----LDDI--TAKNPRVVILSGGPHSVHSPD-APAFPAGF 73 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~-~~~v~~~~~~----~~~~--~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l 73 (531)
++|++|-+-+ .|...+.+.++++|+ .+++++.... .+++ ...+.|+|+++||-...+-.. ...-..+.
T Consensus 57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~ 136 (291)
T 3en0_A 57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDR 136 (291)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHH
Confidence 5799996544 345667788889999 6777765321 1111 134689999999965221110 01112356
Q ss_pred HHHHHhCC-CcEEEeeHHHHHHHH
Q 039743 74 LEWALSNG-VYVLGICYGLQLMVQ 96 (531)
Q Consensus 74 ~~~~~~~~-iPvLGIC~G~Qlla~ 96 (531)
++.+.++| +|+.|.|.|+-+++.
T Consensus 137 L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 137 IRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHHHHCCCeEEEEeCHHHHhhhH
Confidence 66677778 999999999988765
No 113
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=89.18 E-value=7.1 Score=37.23 Aligned_cols=169 Identities=8% Similarity=0.013 Sum_probs=86.3
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhcc---ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHH--HHH
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDDI---TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGL--QLM 94 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~~---~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~--Qll 94 (531)
.++..|++.|+.+++...+.+...+ .+.++|.||+-|.... +.-.+. ..+-++...++|.+++||=.|+ +-.
T Consensus 36 ~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~--~~l~~~-~~~al~~~V~~GgG~vgiH~a~~~~~y 112 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH--DEVKDE-VVERVHRRVLEGMGLIVLHSGHFSKIF 112 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG--GGSCHH-HHHHHHHHHHTTCEEEEEGGGGGSHHH
T ss_pred HHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC--CcCCHH-HHHHHHHHHHcCCCEEEEcccCCcHHH
Confidence 3478889999999886644332211 2578999999542110 000011 2244555677899999996653 445
Q ss_pred HHHcCCEEeecCcccce-eeeEEEe-cCCccccCCCCCceEEEEeeccC-cccc-CCCCcEEEEEe-CCC----cEEEEE
Q 039743 95 VQKLDGVVKVGEKQEYG-RMEILVE-RSSGIFGNKKVGHHQVVWMSHGD-EAVV-LPDGFEVVARS-QQG----AVAAVE 165 (531)
Q Consensus 95 a~~~GG~v~~~~~~e~G-~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~-~v~~-lp~g~~vla~s-~~~----~v~ai~ 165 (531)
...+||... .+..+-+ ...+.+. ++.|+.++++.. +.+..-.-+ .... ..++..++... .++ ...+..
T Consensus 113 ~~llGg~f~-~~~~~~~~~~~v~v~~~~HPit~gl~~~--f~~~dee~Y~~~~~~p~~~~~vl~~~~~~G~~~~~p~~w~ 189 (252)
T 1t0b_A 113 KKLMGTTCN-LKWREADEKERLWVVAPGHPIVEGIGPY--IELEQEEMYGEFFDIPEPDETIFISWFEGGEVFRSGCTFT 189 (252)
T ss_dssp HHHHCSCCC-CEEEEEEEEEEEEESCTTSGGGTTCCSE--EEEEEEEEEESCCCSCCCSEEEEEEEETTSCEEEEEEEEE
T ss_pred HhhhCCccc-CCCccCCceEEEEECCCCChhhcCCCCC--cEeccceeeeeccCCCCCCceEEeeeccCCccccEEEEEE
Confidence 567787632 1100001 1234443 467999999865 443211111 0012 22244555433 244 123334
Q ss_pred ECCCcEEEEe-cC-CC-CCCCcccchhhhhhe
Q 039743 166 NREKRLFGLQ-YH-PE-VTHSPEGMETLRYFL 194 (531)
Q Consensus 166 ~~~~~i~gvQ-FH-PE-~~~~~~g~~i~~~F~ 194 (531)
..+++++.+. .| ++ .-.++.=.+++.|=+
T Consensus 190 ~g~GRvfY~~lGH~~~~~~~~p~~~~ll~~gI 221 (252)
T 1t0b_A 190 RGKGKIFYFRPGHETYPTYHHPDVLKVIANAV 221 (252)
T ss_dssp ETTEEEEEECCCCTTSCGGGCHHHHHHHHHHH
T ss_pred ECCccEEEECCCCCCCcccCCHHHHHHHHHHH
Confidence 4566776664 89 54 223333334444433
No 114
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=86.95 E-value=0.64 Score=42.14 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=41.0
Q ss_pred CCCCCEEEEEeCCCCc--HHHHH----HHHHH-CCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 2 ENKPELVLILDYGSQY--THLIT----RRIRS-LSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~--~~~i~----r~l~~-~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|.|++|+|+ |||.+ +..++ +.+++ .|++++++.... +.+++ .++|+||+ |.|. |....+.....+
T Consensus 1 ~~~M~kilii-y~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l--~~aD~ii~-gsP~--y~g~~~~~lk~f 74 (188)
T 2ark_A 1 SNAMGKVLVI-YDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDV--LWADGLAV-GSPT--NMGLVSWKMKRF 74 (188)
T ss_dssp CCCCEEEEEE-ECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHH--HHCSEEEE-EEEC--BTTBCCHHHHHH
T ss_pred CCCCCEEEEE-EECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHH--HhCCEEEE-EeCc--cCCcCCHHHHHH
Confidence 3667789998 45544 44444 45555 788888887643 33333 46799988 4443 433333333455
Q ss_pred HHHH
Q 039743 74 LEWA 77 (531)
Q Consensus 74 ~~~~ 77 (531)
+++.
T Consensus 75 ld~~ 78 (188)
T 2ark_A 75 FDDV 78 (188)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5553
No 115
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=86.28 E-value=18 Score=35.04 Aligned_cols=147 Identities=7% Similarity=-0.075 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCCc-----HHHHHHHHHHCC-CEEEEEeCCC---Chhcc--ccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 5 PELVLILDYGSQY-----THLITRRIRSLS-ILSLCLSGTC---SLDDI--TAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 5 ~~~I~IlD~G~~~-----~~~i~r~l~~~G-~~~~v~~~~~---~~~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
.-+|||++=+... ...+.+.|++.| +.+++..... +.+.+ .+.++|.||+.-. +... +.-..+.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~-~~~l----~~~~~~~ 78 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYN-GDSW----PEETNRR 78 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCC-SSCC----CHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCC-CCcC----CHHHHHH
Confidence 4579999432222 346778888888 7887764320 11111 2578999997442 1111 1112344
Q ss_pred HHHHHhCCCcEEEeeHHHH------HHHHHcC-CEE------------------ee-------cCcccceeeeEEEe-cC
Q 039743 74 LEWALSNGVYVLGICYGLQ------LMVQKLD-GVV------------------KV-------GEKQEYGRMEILVE-RS 120 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Q------lla~~~G-G~v------------------~~-------~~~~e~G~~~v~~~-~~ 120 (531)
+....++|.+++|+..+.- .-.+.+| |.- .+ ...+......+.+. ++
T Consensus 79 l~~yV~~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v~~~~~g~~~~Hp~~~~~~v~v~~~~ 158 (281)
T 4e5v_A 79 FLEYVQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLNGRDKV 158 (281)
T ss_dssp HHHHHHTTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEEEECCSCCSCBCCSCEEEEEEESCSS
T ss_pred HHHHHHcCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecccccccccccccccCCCCCceEEEEEcCCC
Confidence 4555677999999987542 2334556 532 00 11112223445554 56
Q ss_pred CccccCCCCCceEEEEeeccCccc-cCCCCcEEEEEeCC
Q 039743 121 SGIFGNKKVGHHQVVWMSHGDEAV-VLPDGFEVVARSQQ 158 (531)
Q Consensus 121 ~~l~~~~~~~~~~~v~~~H~~~v~-~lp~g~~vla~s~~ 158 (531)
.|+.+++++. +.....--|... ...++..+|++...
T Consensus 159 HPit~Gl~~~--~~~~~dE~Y~~~~~p~~~~~VL~t~~~ 195 (281)
T 4e5v_A 159 HPVVKGLPLK--WRHAKDELYDRMRGPGNIRDILYTAYS 195 (281)
T ss_dssp STTTTTSCSE--EEEEEECCCBSCBSCCCEEEEEEEEEC
T ss_pred CchhhCCCCc--ccccccCCcccccCCCCCCEEEEEEec
Confidence 7999999875 442222222222 23357889987643
No 116
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=84.68 E-value=1.3 Score=42.56 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=47.1
Q ss_pred CCCCCEEEEEeCCCCc---HHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 2 ENKPELVLILDYGSQY---THLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~---~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
+|.|++|||++ |++| ...+...|++.|+.+.+++......+ ..+.+||.||++--+.... ..-..+.++..
T Consensus 1 ~~~m~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l----~~~~~~~L~~y 75 (259)
T 3rht_A 1 SNAMTRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERM----TAQAIDQLVTM 75 (259)
T ss_dssp -----CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGB----CHHHHHHHHHH
T ss_pred CCCCceEEEEC-CCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccC----CHHHHHHHHHH
Confidence 36788999996 6655 55688899999999999886543222 1257899999973221101 11112344444
Q ss_pred HhCCCcEEEe
Q 039743 78 LSNGVYVLGI 87 (531)
Q Consensus 78 ~~~~iPvLGI 87 (531)
.++|-=++.+
T Consensus 76 V~~GGgLi~~ 85 (259)
T 3rht_A 76 VKAGCGLVML 85 (259)
T ss_dssp HHTTCEEEEE
T ss_pred HHhCCeEEEe
Confidence 5556556555
No 117
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=83.41 E-value=0.83 Score=44.64 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCCCCCEEEEEeC-CC----CcHHHHHHHHHHCCCEEEEEeCCC-----------ChhccccCCCCEEEEcCCCCCCCCC
Q 039743 1 MENKPELVLILDY-GS----QYTHLITRRIRSLSILSLCLSGTC-----------SLDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 1 ~~~~~~~I~IlD~-G~----~~~~~i~r~l~~~G~~~~v~~~~~-----------~~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
|.+.|++|+|+-. ++ .....+.+++++.|+++.+.+... ..+. ...++|.||..||-++
T Consensus 1 m~~~mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~GGDGT---- 75 (292)
T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAE-IGQQADLAVVVGGDGN---- 75 (292)
T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHH-HHHHCSEEEECSCHHH----
T ss_pred CCCcCcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhh-cccCCCEEEEEcCcHH----
Confidence 5666778888833 22 235568899999999887654210 0111 1345799999999653
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
.....+.+...++|+|||=.|
T Consensus 76 -----~l~a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 76 -----MLGAARTLARYDINVIGINRG 96 (292)
T ss_dssp -----HHHHHHHHTTSSCEEEEBCSS
T ss_pred -----HHHHHHHhhcCCCCEEEEECC
Confidence 234445544558999999544
No 118
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=82.73 E-value=2 Score=38.83 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCC--cHHHH----HHHHHHCCCEEEEEeCCC
Q 039743 4 KPELVLILDYGSQ--YTHLI----TRRIRSLSILSLCLSGTC 39 (531)
Q Consensus 4 ~~~~I~IlD~G~~--~~~~i----~r~l~~~G~~~~v~~~~~ 39 (531)
+|++|+|+- ||. ++..+ ++.+++.|++++++....
T Consensus 4 ~M~kilii~-~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 4 SSPYILVLY-YSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp -CCEEEEEE-CCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred CcceEEEEE-eCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 356899984 443 34444 455566789988876543
No 119
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=80.27 E-value=8.7 Score=37.91 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=55.2
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hccc---------------c-CCCCEEEEcCCCCCCC
Q 039743 2 ENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDIT---------------A-KNPRVVILSGGPHSVH 62 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~---------------~-~~~dgiIlsGGp~s~~ 62 (531)
+|.|++|.|+-.|..-...+|+.|.+.|..+.+....... +.+. . .++|-||+|.|-.
T Consensus 1 ~~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~--- 77 (326)
T 3eag_A 1 SNAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAK--- 77 (326)
T ss_dssp --CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCC---
T ss_pred CCCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcC---
Confidence 3678899999998876666899999999999987653211 1111 1 2467777766532
Q ss_pred CCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 63 SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+ ....++.+.++++||++= .|+++..
T Consensus 78 -~-----~~p~~~~a~~~gi~v~~~---~e~~~~~ 103 (326)
T 3eag_A 78 -R-----GMDVVEAILNLGLPYISG---PQWLSEN 103 (326)
T ss_dssp -T-----TCHHHHHHHHTTCCEEEH---HHHHHHH
T ss_pred -C-----CCHHHHHHHHcCCcEEeH---HHHHHHH
Confidence 1 123456678889999874 5777664
No 120
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=78.30 E-value=5 Score=38.05 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCCCCCEEEEE--eCCCCcH----HHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCC
Q 039743 1 MENKPELVLIL--DYGSQYT----HLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 1 ~~~~~~~I~Il--D~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
|+++..+|+++ +....|. ..+.+.+++.|+.+.+...+.+.+. +...++||||+.+...
T Consensus 1 ~s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-------- 72 (291)
T 3l49_A 1 MSLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNL-------- 72 (291)
T ss_dssp -CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCH--------
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--------
Confidence 56666678888 4454443 3456777889999998876554321 2246799999986531
Q ss_pred CChHHHHHHHHhCCCcEEEe
Q 039743 68 AFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGI 87 (531)
......++.+.+.++|+.-+
T Consensus 73 ~~~~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 73 DVLNPWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHTTCCEEEE
T ss_pred hhhHHHHHHHHHCCCcEEEe
Confidence 11235667777789999765
No 121
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=75.77 E-value=1.9 Score=42.53 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=43.3
Q ss_pred CCEEEEEeC-CCC----cHHHHHHHHHHCCCEEEEEeCCCC------------------hhc-----cccCCCCEEEEcC
Q 039743 5 PELVLILDY-GSQ----YTHLITRRIRSLSILSLCLSGTCS------------------LDD-----ITAKNPRVVILSG 56 (531)
Q Consensus 5 ~~~I~IlD~-G~~----~~~~i~r~l~~~G~~~~v~~~~~~------------------~~~-----~~~~~~dgiIlsG 56 (531)
|++|+|+-. ++. ....+.++|++.|..+.+...... ... ....++|.+|..|
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~G 83 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLG 83 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEe
Confidence 467887732 332 255688899999998876543211 110 1134578888888
Q ss_pred CCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 57 GPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 57 Gp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
|-+++ ....+.+...++|+|||=.|
T Consensus 84 GDGT~---------l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 84 GDGTF---------LRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp CHHHH---------HHHHHHHHHHTCCEEEEECS
T ss_pred CCHHH---------HHHHHHhccCCCCEEEEeCC
Confidence 85532 23344444458999999655
No 122
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=75.58 E-value=0.99 Score=39.56 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=51.1
Q ss_pred CEEEEE---eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc---------------ccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLIL---DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI---------------TAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~Il---D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~---------------~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
++|+.+ .+...|.++++-.+|+ -+...+|.. +.++. ...++|.++|.||-..+.-.-.+
T Consensus 27 ~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~-d~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v~~ 103 (157)
T 2r47_A 27 ERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNT-DFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDI 103 (157)
T ss_dssp SEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETT-CGGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSCCH
T ss_pred CeEEEECCCeeecCHHhhheeeeeC--CceEEcCCC-ChhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCCCH
Confidence 456666 3445668889999998 466666653 22211 11578999999997755433322
Q ss_pred CChHHHHHHHHhCCCcEEEeeH
Q 039743 68 AFPAGFLEWALSNGVYVLGICY 89 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~ 89 (531)
.-..++++...+.+..+.|||+
T Consensus 104 e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 104 EDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCCEEEEEh
Confidence 2234566655445677999996
No 123
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=73.42 E-value=19 Score=33.69 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=44.5
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
.+|+++ +....|... +.+.+++.|..+.+...+.+.+.....++||||+.+... ....++.+.+
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~----------~~~~~~~l~~ 78 (277)
T 3cs3_A 9 NIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTF----------PTKEIEKFAE 78 (277)
T ss_dssp CEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECTTS----------CHHHHHHHHH
T ss_pred cEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecCCC----------CHHHHHHHHh
Confidence 567777 555555443 456667789988887655433322222899999986522 1234455566
Q ss_pred CCCcEEEe
Q 039743 80 NGVYVLGI 87 (531)
Q Consensus 80 ~~iPvLGI 87 (531)
.++|+.-+
T Consensus 79 ~~iPvV~~ 86 (277)
T 3cs3_A 79 RGHSIVVL 86 (277)
T ss_dssp TTCEEEES
T ss_pred cCCCEEEE
Confidence 79998755
No 124
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=71.73 E-value=26 Score=32.92 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=49.6
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. .+.+.+++.|+.+.+...+.+.+. +...++||||+.+...+.. .....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-----~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ-----TPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC-----CTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc-----CCcHH
Confidence 467777 55555533 355677789999998876554322 2256899999987543211 11345
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 91 ~~~~~~~~~iPvV~~ 105 (298)
T 3tb6_A 91 YYLNLEKNGIPFAMI 105 (298)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHhcCCCEEEE
Confidence 667777789999755
No 125
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=71.58 E-value=13 Score=35.42 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCCCCCEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEE-eCCCChhc-------cccCCCCEEEEcCCCCCCCCCCC
Q 039743 1 MENKPELVLIL--DYGSQYTHL----ITRRIRSLSILSLCL-SGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 1 ~~~~~~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~-~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
|+++ .+|+++ +....|... +.+.+++.|+.+.+. ..+.+.+. +...++||||+.+....
T Consensus 1 ~s~~-~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~------ 73 (305)
T 3g1w_A 1 MSLN-ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV------ 73 (305)
T ss_dssp -----CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT------
T ss_pred CCCC-ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH------
Confidence 4444 456666 555566443 446677789998874 33333221 22457999999865321
Q ss_pred CCChHHHHHHHHhCCCcEEEe
Q 039743 67 PAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGI 87 (531)
.....++.+.+.++|+.-+
T Consensus 74 --~~~~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 74 --ELTDTINKAVDAGIPIVLF 92 (305)
T ss_dssp --TTHHHHHHHHHTTCCEEEE
T ss_pred --HHHHHHHHHHHCCCcEEEE
Confidence 1234566677789999754
No 126
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=69.05 E-value=11 Score=33.85 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=52.9
Q ss_pred CEEEEEeCCC---------CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 6 ELVLILDYGS---------QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 6 ~~I~IlD~G~---------~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
+++.||--|+ .+...+++.|+++|+.+..+.. .++.+.+. ..++|.||.+||-+-..+ .+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~----D~ 79 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFD----DM 79 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTT----CC
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcc----cc
Confidence 5678885553 3467799999999997664321 22333321 235899999999773222 23
Q ss_pred hHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 70 PAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
..+.+..+. +.++.+-=--++.|-..++
T Consensus 80 T~ea~a~~~--~~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 80 TVEGFAKCI--GQDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp HHHHHHHHH--TCCCEECHHHHHHHHHHHC
T ss_pred hHHHHHHHc--CCCeeeCHHHHHHHHHHHc
Confidence 444544433 5566555555666666554
No 127
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=68.96 E-value=25 Score=29.91 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCEEEEEeCC---CCcHHHHHHHHHHCCCEEEEEeCCCC--------------hhccccCCCCEEEEcCCCCCCCCC---
Q 039743 5 PELVLILDYG---SQYTHLITRRIRSLSILSLCLSGTCS--------------LDDITAKNPRVVILSGGPHSVHSP--- 64 (531)
Q Consensus 5 ~~~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~~~~~~--------------~~~~~~~~~dgiIlsGGp~s~~~~--- 64 (531)
+.+|+|+-.+ +.+.+.+++.+++.|+. ++|.+-. .+++ ...+|.+++.=.+..+.+-
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i~G~~~~~sl~el-~~~vDlavi~vp~~~~~~v~~~ 89 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEELFGEEAVASLLDL-KEPVDILDVFRPPSALMDHLPE 89 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEETTEECBSSGGGC-CSCCSEEEECSCHHHHTTTHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcCCCEEecCCHHHC-CCCCCEEEEEeCHHHHHHHHHH
Confidence 4679999665 45677899999999986 4443322 1222 2356766665433211100
Q ss_pred -----------CCCCChHHHHHHHHhCCCcEEE-eeHHHHHHHH
Q 039743 65 -----------DAPAFPAGFLEWALSNGVYVLG-ICYGLQLMVQ 96 (531)
Q Consensus 65 -----------~~~~~~~~l~~~~~~~~iPvLG-IC~G~Qlla~ 96 (531)
.......++.+.+.++|+.++| =|.|.+.-..
T Consensus 90 ~~~~gi~~i~~~~g~~~~~~~~~a~~~Gir~vgpnc~g~~~~~~ 133 (140)
T 1iuk_A 90 VLALRPGLVWLQSGIRHPEFEKALKEAGIPVVADRCLMVEHKRL 133 (140)
T ss_dssp HHHHCCSCEEECTTCCCHHHHHHHHHTTCCEEESCCHHHHHHHH
T ss_pred HHHcCCCEEEEcCCcCHHHHHHHHHHcCCEEEcCCccceEChhh
Confidence 0112246788888899999999 9999886544
No 128
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=68.76 E-value=7.6 Score=33.09 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCEEEEEeCCCC--cHHHHHH----HHHHCCCEEEEEeCCC-ChhccccC-CCCEEEEc
Q 039743 5 PELVLILDYGSQ--YTHLITR----RIRSLSILSLCLSGTC-SLDDITAK-NPRVVILS 55 (531)
Q Consensus 5 ~~~I~IlD~G~~--~~~~i~r----~l~~~G~~~~v~~~~~-~~~~~~~~-~~dgiIls 55 (531)
|++|+|+ |+|+ ++..+|+ .+++.|+.+++++... +.+++ . ++|+||+.
T Consensus 1 M~ki~I~-y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l--~~~~d~ii~g 56 (148)
T 3f6r_A 1 MSKVLIV-FGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENL--ADGYDAVLFG 56 (148)
T ss_dssp -CEEEEE-EECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTT--TTTCSEEEEE
T ss_pred CCeEEEE-EECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHh--cccCCEEEEE
Confidence 4578877 4444 4555554 4556788999887654 23333 4 78988874
No 129
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=68.22 E-value=5.6 Score=35.83 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=22.0
Q ss_pred CCEEEEEeCCCCcHHHHHH----HHHHCCCEEEEEeCC
Q 039743 5 PELVLILDYGSQYTHLITR----RIRSLSILSLCLSGT 38 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r----~l~~~G~~~~v~~~~ 38 (531)
|++|+||-+-.+++..+++ .+++.|++++++...
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~ 41 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 4689998544444555554 455568898887654
No 130
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=67.95 E-value=15 Score=30.37 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=40.1
Q ss_pred EEEEeCCCC--cHHHHH----HHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCC--hHHHHHHHH
Q 039743 8 VLILDYGSQ--YTHLIT----RRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAF--PAGFLEWAL 78 (531)
Q Consensus 8 I~IlD~G~~--~~~~i~----r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~--~~~l~~~~~ 78 (531)
|+|+ |+|. ++..++ +.+++.|+++++++... +.+++ .++|+||+. .| +|....+.. ....+++..
T Consensus 2 i~ii-y~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l--~~~d~vi~g-~p--~y~~~~~~~~~~~~fl~~l~ 75 (137)
T 2fz5_A 2 VEIV-YWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDV--ASKDVILLG-CP--AMGSEELEDSVVEPFFTDLA 75 (137)
T ss_dssp EEEE-ECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHH--HTCSEEEEE-CC--CBTTTBCCHHHHHHHHHHHG
T ss_pred EEEE-EECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHH--hcCCEEEEE-cc--ccCCCCCCHHHHHHHHHHhh
Confidence 5666 4444 455555 44556788898887643 33333 567998884 33 244333333 345555542
Q ss_pred h--CCCcEEE
Q 039743 79 S--NGVYVLG 86 (531)
Q Consensus 79 ~--~~iPvLG 86 (531)
. .++|+.-
T Consensus 76 ~~l~~k~~~~ 85 (137)
T 2fz5_A 76 PKLKGKKVGL 85 (137)
T ss_dssp GGCSSCEEEE
T ss_pred hhcCCCEEEE
Confidence 2 3566543
No 131
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=66.93 E-value=9.5 Score=34.55 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=36.4
Q ss_pred CEEEEEeCC--------CCcHHHHHHHHHHCCCEEEEEeC-CCChhcc----c--c-CCCCEEEEcCCCC
Q 039743 6 ELVLILDYG--------SQYTHLITRRIRSLSILSLCLSG-TCSLDDI----T--A-KNPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G--------~~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~----~--~-~~~dgiIlsGGp~ 59 (531)
++|.||--| +.+...++..|+++|+.+..+.. .++.+.+ . . .++|.||.+||-+
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts 100 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG 100 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 578888544 34567899999999987664321 2233322 1 2 5789999999976
No 132
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=66.54 E-value=24 Score=36.97 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=56.0
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh--hcc--------------ccCCCCEEEEcCCCCCCCCCCCC
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL--DDI--------------TAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~--~~~--------------~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
++++|.|+-.|..-...+|+.|.+.|..+.......+. +.+ ...++|.||+|.|-. .+
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~----~~-- 94 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAIS----AD-- 94 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSC----TT--
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCC----CC--
Confidence 44689999998877666899999999999887543221 001 023568888876632 11
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
. ..+..+.++++||++= .++++..+.
T Consensus 95 --~-p~~~~a~~~gi~v~~~---~e~l~~~~~ 120 (494)
T 4hv4_A 95 --N-PEIVAAREARIPVIRR---AEMLAELMR 120 (494)
T ss_dssp --C-HHHHHHHHTTCCEEEH---HHHHHHHHT
T ss_pred --C-HHHHHHHHCCCCEEcH---HHHHHHHhc
Confidence 1 2456677889998874 777777654
No 133
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=66.18 E-value=28 Score=32.73 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=48.0
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. .+.+.+++.|+.+.+...+.+.+. +...++||||+.+.... ....
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--------~~~~ 80 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV--------YIGS 80 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT--------TTHH
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH--------HHHH
Confidence 567777 44554533 355677789999998876654322 22468999999764221 1234
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 81 ~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 81 AIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCEEEe
Confidence 566777779999765
No 134
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=65.82 E-value=30 Score=33.01 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=48.2
Q ss_pred CEEEEE--eCCCCcH----HHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYT----HLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|. ..+.+.+++.|+.+.+...+.+.+. +...++||||+.+.... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--------~~~~ 74 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ--------VLSN 74 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTT--------SCHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--------hhHH
Confidence 357766 5555553 3456777789999988876544321 22568999999875321 1235
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 75 ~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 75 VVKEAKQEGIKVLAY 89 (313)
T ss_dssp HHHHHHTTTCEEEEE
T ss_pred HHHHHHHCCCeEEEE
Confidence 667777789999755
No 135
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=64.32 E-value=4.5 Score=34.00 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC--ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC--SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~--~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
|+++..||+|+|--......+.+.|++.|+.+.-...+. ..+.+....||.+++ +..=++... .++.+...
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll-----Di~mP~~~G--~el~~~lr 76 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII-----DVNLDGEPS--YPVADILA 76 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE-----CSSSSSCCS--HHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE-----ecCCCCCCH--HHHHHHHH
Confidence 455556899998877778889999999998653111111 112233567898887 111111111 35666666
Q ss_pred hCCCcEEEe
Q 039743 79 SNGVYVLGI 87 (531)
Q Consensus 79 ~~~iPvLGI 87 (531)
+.++||+-+
T Consensus 77 ~~~ipvI~l 85 (123)
T 2lpm_A 77 ERNVPFIFA 85 (123)
T ss_dssp HTCCSSCCB
T ss_pred cCCCCEEEE
Confidence 678997643
No 136
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=64.06 E-value=31 Score=32.21 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=47.4
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+... ..
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----------~~ 76 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-----------PQ 76 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-----------HH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-----------HH
Confidence 567777 55555533 355677788999998876654321 2256899999986421 34
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 77 ~~~~l~~~~iPvV~i 91 (276)
T 3jy6_A 77 TVQEILHQQMPVVSV 91 (276)
T ss_dssp HHHHHHTTSSCEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 666677789999765
No 137
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=63.69 E-value=9.7 Score=33.27 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=30.9
Q ss_pred EEEEEeCCCCc--HHH----HHHHHHHCCCEEEEEeCCC-Chhccc--cCCCCEEEEcCCCC
Q 039743 7 LVLILDYGSQY--THL----ITRRIRSLSILSLCLSGTC-SLDDIT--AKNPRVVILSGGPH 59 (531)
Q Consensus 7 ~I~IlD~G~~~--~~~----i~r~l~~~G~~~~v~~~~~-~~~~~~--~~~~dgiIlsGGp~ 59 (531)
+|+|+ |+|.+ +.. +++.+++.|+.++++.... +.+++. ..++|+||| |.|.
T Consensus 2 kv~Iv-Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspt 61 (161)
T 3hly_A 2 SVLIG-YLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPP 61 (161)
T ss_dssp CEEEE-ECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCB
T ss_pred EEEEE-EECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCC
Confidence 46776 45544 554 4555667799888887654 333331 246899888 4443
No 138
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=63.32 E-value=34 Score=32.21 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=46.0
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ |....|.. -+.+.+++.|..+.+...+.+.+. +...++||||+.+... ...
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----------~~~ 86 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI----------TDE 86 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC----------CHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC----------CHH
Confidence 467777 55555533 345677789999888765544321 2246899999976421 123
Q ss_pred HHHHHHhCCCcEEEee
Q 039743 73 FLEWALSNGVYVLGIC 88 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC 88 (531)
.++.+.+.++|+.-+.
T Consensus 87 ~~~~l~~~~iPvV~~~ 102 (289)
T 2fep_A 87 HVAEFKRSPVPIVLAA 102 (289)
T ss_dssp HHHHHHHSSSCEEEES
T ss_pred HHHHHHhcCCCEEEEc
Confidence 4555566799997653
No 139
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=63.29 E-value=15 Score=29.58 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=38.2
Q ss_pred cceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCccc
Q 039743 460 VRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530 (531)
Q Consensus 460 ~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~ 530 (531)
++.|-+.+|++ +.+... +|.-+.++-..+-..+...+ .+++||..|-..++.+||=|.+|
T Consensus 33 V~~v~v~~~~~-----V~v~l~-----lt~~~cp~~~~l~~~i~~al-~~l~gv~~v~V~l~~~p~W~~~~ 92 (103)
T 1uwd_A 33 VYDIQIDDQNN-----VKVLMT-----MTTPMCPLAGMILSDAEEAI-KKIEGVNNVEVELTFDPPWTPER 92 (103)
T ss_dssp CCCEEECTTCE-----EEEEEC-----CSSSCCSSHHHHHHHHHHHH-HTSSSCCEEEEEECCSSCCCGGG
T ss_pred eeEEEEcCCCE-----EEEEEE-----ECCCCCcHHHHHHHHHHHHH-HhCCCcceEEEEEecCCCCChHH
Confidence 56666776532 223321 13334444334444455555 78999999999999999988877
No 140
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=62.68 E-value=17 Score=30.93 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=41.9
Q ss_pred CEEEEEeCCCCc--HHH----HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCC-CCCCCCChHHHHHHHH
Q 039743 6 ELVLILDYGSQY--THL----ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVH-SPDAPAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~----i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~-~~~~~~~~~~l~~~~~ 78 (531)
++|+|+ |+|++ +.. |++.+.+.|+.+.++... +.++ ..++|.||+ |.| +| ....|......++...
T Consensus 2 ~ki~I~-Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~-~~~~--l~~~d~vi~-g~p--t~g~g~~p~~~~~f~~~l~ 74 (147)
T 2hna_A 2 ADITLI-SGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP-LLED--LPASGIWLV-ISS--THGAGDIPDNLSPFYEALQ 74 (147)
T ss_dssp CSEEEE-CCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT-TSCS--SCSEEEEEE-ECC--TTTTCCTTSSCHHHHHHHH
T ss_pred CeEEEE-EECCchHHHHHHHHHHHHHHHCCCceEEecCC-CHHH--cccCCeEEE-EEC--ccCCCCCChhHHHHHHHHH
Confidence 457777 66654 444 555566678888776432 2222 245677777 443 34 2333444455555543
Q ss_pred h-----CCCcEEEeeHHHH
Q 039743 79 S-----NGVYVLGICYGLQ 92 (531)
Q Consensus 79 ~-----~~iPvLGIC~G~Q 92 (531)
. .++++.-.++|-+
T Consensus 75 ~~~~~l~~~~~avfg~G~~ 93 (147)
T 2hna_A 75 EQKPDLSAVRFGAIGIGSR 93 (147)
T ss_dssp HHCCCTTEEEEEEESCCHH
T ss_pred hhccccCCCEEEEEecccC
Confidence 2 2345554555544
No 141
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=62.30 E-value=9 Score=34.37 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=36.0
Q ss_pred CCCCCCEEEEEeCCCC---------cHHHHHHHHH---HCCCEEEEEeCCCChhcc----c--cC--CCCEEEEcCCCC
Q 039743 1 MENKPELVLILDYGSQ---------YTHLITRRIR---SLSILSLCLSGTCSLDDI----T--AK--NPRVVILSGGPH 59 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~---------~~~~i~r~l~---~~G~~~~v~~~~~~~~~~----~--~~--~~dgiIlsGGp~ 59 (531)
|..+++++.||--|+. +...++..|+ ++|+.+......++.+.+ . .. ++|.||.+||-+
T Consensus 1 ~~~~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 1 MSEKKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp ----CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCCCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4555678888866642 3567888888 899876322223333332 1 22 789999999976
No 142
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=62.19 E-value=21 Score=29.85 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=27.8
Q ss_pred ccceeeccCCCCCHHHHHHHHHH---HhCCcEEEEEEeC
Q 039743 224 EDHVICALSGGVDSTVAATLVHK---AIGDRLHCVFVDN 259 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k---~~g~~v~~v~id~ 259 (531)
.++++|++.|.-.|.-++..+.+ ..+.+++.+|+-.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 44 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLD 44 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEc
Confidence 47899999999999877765543 3478999999853
No 143
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=61.74 E-value=29 Score=32.70 Aligned_cols=73 Identities=10% Similarity=-0.006 Sum_probs=43.8
Q ss_pred CEEEEE--e-C---CCCcHHH----HHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCC
Q 039743 6 ELVLIL--D-Y---GSQYTHL----ITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPA 68 (531)
Q Consensus 6 ~~I~Il--D-~---G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~ 68 (531)
.+|+++ + . ...|... +.+.+++.|..+.+...+.+.+ .+...++||||+.+...+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------- 76 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-------- 76 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT--------
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC--------
Confidence 467776 4 4 5555433 4566778898887765433221 122467999999764321
Q ss_pred ChHHHHHHHHhCCCcEEEee
Q 039743 69 FPAGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 69 ~~~~l~~~~~~~~iPvLGIC 88 (531)
...++.+.+.++|+.-+.
T Consensus 77 --~~~~~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 77 --DPRVQFLLKQKFPFVAFG 94 (287)
T ss_dssp --CHHHHHHHHTTCCEEEES
T ss_pred --cHHHHHHHhcCCCEEEEC
Confidence 134455556799997663
No 144
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=60.54 E-value=26 Score=32.89 Aligned_cols=72 Identities=7% Similarity=0.060 Sum_probs=45.5
Q ss_pred CEEEEE--e-----CCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLIL--D-----YGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~Il--D-----~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+++ + ....|... +.+.+++.|..+.+...+.+.+. +...++||||+.+...+
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~------- 81 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN------- 81 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-------
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-------
Confidence 568887 4 45555443 45677788998887655433221 22468999999764321
Q ss_pred CChHHHHHHHHhCCCcEEEe
Q 039743 68 AFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGI 87 (531)
...++.+.+.++|+.-+
T Consensus 82 ---~~~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 82 ---DRIIQYLHEQNFPFVLI 98 (292)
T ss_dssp ---CHHHHHHHHTTCCEEEE
T ss_pred ---hHHHHHHHHCCCCEEEE
Confidence 13556666779998754
No 145
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=60.52 E-value=7.3 Score=31.69 Aligned_cols=82 Identities=10% Similarity=-0.019 Sum_probs=47.5
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccC-CCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAK-NPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~-~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
|.+++.+|+|+|-.......+.+.|+..|+.+........ .+.+... .+|.+|+--.-. + .. -..++++...
T Consensus 1 m~m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~---~-~~--~g~~~~~~l~ 74 (132)
T 2rdm_A 1 MSLEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFC---Q-PP--DGWQVARVAR 74 (132)
T ss_dssp -CCSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCS---S-SS--CHHHHHHHHH
T ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCC---C-CC--CHHHHHHHHH
Confidence 5656678999998777788889999999987765321111 1112233 689888742211 0 00 0124444443
Q ss_pred h--CCCcEEEee
Q 039743 79 S--NGVYVLGIC 88 (531)
Q Consensus 79 ~--~~iPvLGIC 88 (531)
+ .++|++-+.
T Consensus 75 ~~~~~~~ii~~s 86 (132)
T 2rdm_A 75 EIDPNMPIVYIS 86 (132)
T ss_dssp HHCTTCCEEEEE
T ss_pred hcCCCCCEEEEe
Confidence 3 368887765
No 146
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=60.01 E-value=7.7 Score=32.27 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=48.8
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
|++++.+|+|+|--......+.+.|+..|....+....... +.+....+|.||+--.-. +. -..++++..
T Consensus 1 M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~---~~----~g~~~~~~l 73 (144)
T 3kht_A 1 MSLRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLP---IA----NGFEVMSAV 73 (144)
T ss_dssp ----CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCG---GG----CHHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCC---CC----CHHHHHHHH
Confidence 55555689999977777888999999999875554443322 123345689888732211 00 123556655
Q ss_pred Hh----CCCcEEEeeH
Q 039743 78 LS----NGVYVLGICY 89 (531)
Q Consensus 78 ~~----~~iPvLGIC~ 89 (531)
.+ .++|++-+.-
T Consensus 74 r~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 74 RKPGANQHTPIVILTD 89 (144)
T ss_dssp HSSSTTTTCCEEEEET
T ss_pred HhcccccCCCEEEEeC
Confidence 54 3689988773
No 147
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=58.62 E-value=36 Score=31.44 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=45.6
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+.... . ..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-------~~ 73 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPP--E-------DD 73 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCS--S-------CC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccc--c-------HH
Confidence 457777 54555533 355677789999998876654322 22568999999865321 1 12
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 74 ~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 74 SYRELQDKGLPVIAI 88 (272)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 345556679999744
No 148
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=58.10 E-value=42 Score=31.36 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=45.6
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. -+.+.+++.|..+.+.....+.+. +...++||||+.+... . . ...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~----~---~-~~~ 74 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDA----D---G-SIA 74 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCT----T---T-THH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCh----H---H-HHH
Confidence 357776 44555533 345677788998888765444321 2246899999986421 1 1 123
Q ss_pred HHHHHHhCCCcEEEee
Q 039743 73 FLEWALSNGVYVLGIC 88 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC 88 (531)
.++.+.+.++|+.-+.
T Consensus 75 ~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 75 NVKRAKEAGIPVFCVD 90 (290)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHHCCCeEEEEe
Confidence 4566666799997653
No 149
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=57.69 E-value=40 Score=32.29 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=47.9
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|... +.+.+++.|+.+.+...+.+.+. +...++||||+.+... .....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~--------~~~~~ 75 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG--------TTLSD 75 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG--------GGGHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc--------hhHHH
Confidence 467776 555556433 55777789999888875544321 2245799999976421 11245
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 76 ~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 76 VLKQAGEQGIKVIAY 90 (330)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 667777789999765
No 150
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=57.09 E-value=8.1 Score=37.45 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=44.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh-CC-CcE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS-NG-VYV 84 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-~~-iPv 84 (531)
+|+|+--...-.+.+.++|++.|+.+.+..... +. ..++|.+|.-||-++ +++.+.. .+ +||
T Consensus 31 ki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~--~~--~~~~DlvIvlGGDGT------------~L~aa~~~~~~~Pi 94 (278)
T 1z0s_A 31 RAAVVYKTDGHVKRIEEALKRLEVEVELFNQPS--EE--LENFDFIVSVGGDGT------------ILRILQKLKRCPPI 94 (278)
T ss_dssp EEEEEESSSTTHHHHHHHHHHTTCEEEEESSCC--GG--GGGSSEEEEEECHHH------------HHHHHTTCSSCCCE
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEccccc--cc--cCCCCEEEEECCCHH------------HHHHHHHhCCCCcE
Confidence 588884433227788999999999887654321 11 246799999999542 3333322 12 899
Q ss_pred EEeeHH
Q 039743 85 LGICYG 90 (531)
Q Consensus 85 LGIC~G 90 (531)
+||=.|
T Consensus 95 lGIN~G 100 (278)
T 1z0s_A 95 FGINTG 100 (278)
T ss_dssp EEEECS
T ss_pred EEECCC
Confidence 999877
No 151
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=55.39 E-value=24 Score=33.42 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=45.4
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCC--CChh-------ccccCCCCEEEEcCCCCCCCCCCCCCCh
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGT--CSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~--~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
.+|+++ +....|.. .+.+.+++.|+.+.+...+ .+.+ .+...++||||+.+.... . .
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-------~-~ 75 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT-------A-F 75 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS-------T-T
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH-------H-H
Confidence 357777 43444433 3556777889999887654 2222 223568999999754221 1 2
Q ss_pred HHHHHHHHhCCCcEEEe
Q 039743 71 AGFLEWALSNGVYVLGI 87 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGI 87 (531)
...++.+.+.++|+.-+
T Consensus 76 ~~~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 34566666779999754
No 152
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=55.11 E-value=34 Score=31.58 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=45.9
Q ss_pred EEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCC--CChh-------ccccCC-CCEEEEcCCCCCCCCCCCCCCh
Q 039743 7 LVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGT--CSLD-------DITAKN-PRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 7 ~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~--~~~~-------~~~~~~-~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
+|+++ +..+.|.. .+.+++++.|+.+.+...+ .+.+ .+...+ +||||+.+... ...
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~--------~~~ 73 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSA--------EDL 73 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSST--------TTT
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCH--------HHH
Confidence 56666 55555543 3556677789998887632 2322 122446 99999986421 113
Q ss_pred HHHHHHHHhCCCcEEEee
Q 039743 71 AGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC 88 (531)
...++.+.+.++|+.-+.
T Consensus 74 ~~~~~~~~~~~ipvV~~~ 91 (276)
T 3ksm_A 74 TPSVAQYRARNIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 456677777899998663
No 153
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=54.61 E-value=23 Score=31.43 Aligned_cols=33 Identities=12% Similarity=-0.094 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCC--cHHHHH----HHHHH-CCCEEEEEeCC
Q 039743 5 PELVLILDYGSQ--YTHLIT----RRIRS-LSILSLCLSGT 38 (531)
Q Consensus 5 ~~~I~IlD~G~~--~~~~i~----r~l~~-~G~~~~v~~~~ 38 (531)
|++|+|+- ||. ++..++ +.+++ .|++++++...
T Consensus 1 Mmkilii~-~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 1 MAKVLVLY-YSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp -CEEEEEE-CCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CCeEEEEE-eCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 35788884 443 344444 55555 78999888764
No 154
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=54.60 E-value=50 Score=27.10 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=26.1
Q ss_pred cceeeccCCCCCHHHHHHHHH---HHhCCcEEEEEEe
Q 039743 225 DHVICALSGGVDSTVAATLVH---KAIGDRLHCVFVD 258 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~---k~~g~~v~~v~id 258 (531)
++++|++.|.-.|.-++..+. +..+.+++.+|+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 39 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 589999999999887665543 3347899999885
No 155
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=54.57 E-value=30 Score=32.52 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=46.8
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. .+.+.+++.|+.+.+...+.+.+. +...++||||+.+... ...
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----------~~~ 78 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG----------EHD 78 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS----------CCH
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC----------ChH
Confidence 567777 55555533 355677789999998876554332 2246899999987532 123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 79 ~~~~~~~~~iPvV~~ 93 (291)
T 3egc_A 79 YLRTELPKTFPIVAV 93 (291)
T ss_dssp HHHHSSCTTSCEEEE
T ss_pred HHHHhhccCCCEEEE
Confidence 555656679999754
No 156
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=54.50 E-value=21 Score=29.76 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=36.7
Q ss_pred CcHHHHH----HHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCC-CCC-ChHHHHHHHHh--CCCcEEE
Q 039743 16 QYTHLIT----RRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPD-APA-FPAGFLEWALS--NGVYVLG 86 (531)
Q Consensus 16 ~~~~~i~----r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~-~~~-~~~~l~~~~~~--~~iPvLG 86 (531)
+++..++ +.+++.|+.+++++... +.+++ .++|+||+. .| +|... .|. .....++.... .++|+.-
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l--~~~d~iiig-~p--ty~~g~~p~~~~~~fl~~l~~~l~~k~~~~ 84 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNIDEL--LNEDILILG-CS--AMTDEVLEESEFEPFIEEISTKISGKKVAL 84 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHH--TTCSEEEEE-EC--CBTTTBCCTTTHHHHHHHHGGGCTTCEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHH--hhCCEEEEE-cC--ccCCCCCChHHHHHHHHHHHhhcCCCEEEE
Confidence 3455544 55567798888887543 33333 578988884 33 24433 232 34556655432 4566543
Q ss_pred e
Q 039743 87 I 87 (531)
Q Consensus 87 I 87 (531)
+
T Consensus 85 f 85 (138)
T 5nul_A 85 F 85 (138)
T ss_dssp E
T ss_pred E
Confidence 3
No 157
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=54.21 E-value=45 Score=31.31 Aligned_cols=73 Identities=7% Similarity=0.022 Sum_probs=44.3
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------c---cccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------D---ITAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~---~~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
.+|+++ +....|.. .+.+.+++.|..+.+...+.+.+ . +...++||||+.+...+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------- 79 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--------- 79 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC---------
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC---------
Confidence 468777 55554533 34567778899888776543221 1 12468999999864321
Q ss_pred hHHHHHHHHhCCCcEEEee
Q 039743 70 PAGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC 88 (531)
...++.+.+.++|+.-+.
T Consensus 80 -~~~~~~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 80 -DEDLDELHRMHPKMVFLN 97 (290)
T ss_dssp -HHHHHHHHHHCSSEEEES
T ss_pred -HHHHHHHhhcCCCEEEEc
Confidence 234455555699997653
No 158
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=53.91 E-value=11 Score=33.89 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=39.3
Q ss_pred CEEEEEeCCC---CcHHHHHHHHHHC---CCEEEEEeCCC-Ch--------------hcc--ccCCCCEEEEcCCCCCCC
Q 039743 6 ELVLILDYGS---QYTHLITRRIRSL---SILSLCLSGTC-SL--------------DDI--TAKNPRVVILSGGPHSVH 62 (531)
Q Consensus 6 ~~I~IlD~G~---~~~~~i~r~l~~~---G~~~~v~~~~~-~~--------------~~~--~~~~~dgiIlsGGp~s~~ 62 (531)
++|+||.... +++..+++++.+. |.+++++.... +. .++ ....+|+|||. .|- |
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~-sP~--y 83 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFA-TPE--Y 83 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEE-CCE--E
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEE-ccc--c
Confidence 4799996432 5788888877652 67787765432 10 011 13457999983 443 3
Q ss_pred CCCCCCChHHHHHHH
Q 039743 63 SPDAPAFPAGFLEWA 77 (531)
Q Consensus 63 ~~~~~~~~~~l~~~~ 77 (531)
....|...+.++++.
T Consensus 84 ~~~~p~~lK~~iD~~ 98 (193)
T 1rtt_A 84 NYSMAGVLKNAIDWA 98 (193)
T ss_dssp TTEECHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHh
Confidence 333344445566664
No 159
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=53.89 E-value=8.5 Score=32.65 Aligned_cols=79 Identities=9% Similarity=0.109 Sum_probs=47.8
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--
Q 039743 3 NKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS-- 79 (531)
Q Consensus 3 ~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-- 79 (531)
++..+|+|+|--......+.+.|+..|+.+........ .+.+....+|.||+-=.-. + .-..++++...+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~-----~--~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMP-----E--MDGYALCRWLKGQP 77 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCS-----S--SCHHHHHHHHHHST
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCC-----C--CCHHHHHHHHHhCC
Confidence 44468999998777788899999999987655432111 1123345789888842211 1 012345555554
Q ss_pred --CCCcEEEee
Q 039743 80 --NGVYVLGIC 88 (531)
Q Consensus 80 --~~iPvLGIC 88 (531)
..+|++-+.
T Consensus 78 ~~~~~pii~~s 88 (154)
T 3gt7_A 78 DLRTIPVILLT 88 (154)
T ss_dssp TTTTSCEEEEE
T ss_pred CcCCCCEEEEE
Confidence 368998876
No 160
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=53.77 E-value=56 Score=31.60 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=45.7
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ |....|... +.+.+++.|+.+.+...+.+.+. +...++||||+.+... ...
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~----------~~~ 138 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH----------SEA 138 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC----------CHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC----------CHH
Confidence 467777 555556443 44566678999888766544322 2246799999976422 124
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 139 ~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 139 ARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHCSSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 556666779999755
No 161
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=53.36 E-value=60 Score=30.32 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=44.0
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+... ...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~----------~~~ 78 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALS----------ELP 78 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGG----------GHH
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC----------ChH
Confidence 467777 45555533 345667788999888775544321 2246799999976422 123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+. .++|+.-+
T Consensus 79 ~~~~l~-~~iPvV~~ 92 (285)
T 3c3k_A 79 ELQNII-GAFPWVQC 92 (285)
T ss_dssp HHHHHH-TTSSEEEE
T ss_pred HHHHHh-cCCCEEEE
Confidence 344445 69998765
No 162
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=52.48 E-value=70 Score=30.75 Aligned_cols=73 Identities=10% Similarity=0.056 Sum_probs=45.9
Q ss_pred CEEEEE--e--CCCCcH----HHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCCh
Q 039743 6 ELVLIL--D--YGSQYT----HLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 6 ~~I~Il--D--~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
.+|+++ | +...|. ..+.+.+++.|..+.+...+.+.+. +...++||||+.+...+ .
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~---------~ 132 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS---------V 132 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC---------H
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC---------h
Confidence 467777 4 445553 3355777889999988876544322 22468999999764321 2
Q ss_pred HHHHHHHHhCCCcEEEe
Q 039743 71 AGFLEWALSNGVYVLGI 87 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGI 87 (531)
..+.+.+.+.++|+.-+
T Consensus 133 ~~~~~~~~~~~iPvV~~ 149 (338)
T 3dbi_A 133 DEIDDIIDAHSQPIMVL 149 (338)
T ss_dssp HHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 34555556678998754
No 163
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=52.44 E-value=45 Score=31.64 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=45.8
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ |....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+...+ ..+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---------~~~ 86 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF---------DDD 86 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC---------CHH
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC---------cHH
Confidence 347776 55555533 355677789999988876544321 22568999999875321 111
Q ss_pred HHHHHHhCCCcEEEee
Q 039743 73 FLEWALSNGVYVLGIC 88 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC 88 (531)
.++.+.+ ++|+.-+.
T Consensus 87 ~~~~l~~-~iPvV~i~ 101 (303)
T 3kke_A 87 MLAAVLE-GVPAVTIN 101 (303)
T ss_dssp HHHHHHT-TSCEEEES
T ss_pred HHHHHhC-CCCEEEEC
Confidence 5566667 99987553
No 164
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=52.43 E-value=18 Score=31.42 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=32.2
Q ss_pred CEEEEEeCCCCc--HHH----HHHHHHHCCCEEEEEeCCC--Chhccc--cCCCCEEEEcCCC
Q 039743 6 ELVLILDYGSQY--THL----ITRRIRSLSILSLCLSGTC--SLDDIT--AKNPRVVILSGGP 58 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~----i~r~l~~~G~~~~v~~~~~--~~~~~~--~~~~dgiIlsGGp 58 (531)
++|+|+ |+|.+ +.. +++.+++.|+.++++.... +.+++. ..++|+||| |.|
T Consensus 5 ~kv~Iv-Y~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 65 (159)
T 3fni_A 5 TSIGVF-YVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS 65 (159)
T ss_dssp CEEEEE-ECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred CEEEEE-EECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence 578888 55544 544 5566667899998887654 333332 345788887 444
No 165
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=51.33 E-value=26 Score=32.80 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=44.7
Q ss_pred CCCCCCEEEEE--eCC--CCcHHH----HHHHHHHCCCEEEEEeCC--CChh-------ccccCCCCEEEEcCCCCCCCC
Q 039743 1 MENKPELVLIL--DYG--SQYTHL----ITRRIRSLSILSLCLSGT--CSLD-------DITAKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 1 ~~~~~~~I~Il--D~G--~~~~~~----i~r~l~~~G~~~~v~~~~--~~~~-------~~~~~~~dgiIlsGGp~s~~~ 63 (531)
|..+..+|+++ +.+ +.|... +.+.+++.|..+.+...+ .+.+ .+...++||||+.+....
T Consensus 1 ~~~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--- 77 (289)
T 3brs_A 1 MSLKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYE--- 77 (289)
T ss_dssp ----CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTT---
T ss_pred CCCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH---
Confidence 44555678888 445 555433 446667789988876542 2321 122468999999864321
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEe
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
. ....++.+.+.++|+.-+
T Consensus 78 ----~-~~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 78 ----K-TYDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp ----T-THHHHTTTGGGTCEEEEE
T ss_pred ----H-hHHHHHHHHHCCCcEEEE
Confidence 1 123445555569998765
No 166
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=51.13 E-value=11 Score=31.24 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhcccc-CCCCEEEEc
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITA-KNPRVVILS 55 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~-~~~dgiIls 55 (531)
|+++..+|+|+|--......+.+.|++.|+.+........ .+.+.. ..+|.||+-
T Consensus 1 M~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D 57 (140)
T 3h5i_A 1 MSLKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMD 57 (140)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEE
T ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEe
Confidence 5555568999998777788899999999987664322111 112223 568988874
No 167
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=50.93 E-value=37 Score=34.13 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=46.1
Q ss_pred CCEEEEE-eCCCCc----HHHHHHHHHHCCCEEEEEeCC-----------------------CChhccccCCCCEEEEcC
Q 039743 5 PELVLIL-DYGSQY----THLITRRIRSLSILSLCLSGT-----------------------CSLDDITAKNPRVVILSG 56 (531)
Q Consensus 5 ~~~I~Il-D~G~~~----~~~i~r~l~~~G~~~~v~~~~-----------------------~~~~~~~~~~~dgiIlsG 56 (531)
+.+|+|+ -.++.- ...++++|.+.|+.+.+-+.. .+.+++ ..++|.+|.-|
T Consensus 38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~lG 116 (365)
T 3pfn_A 38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICLG 116 (365)
T ss_dssp CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEES
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEEc
Confidence 4578888 233322 556889999999877653210 011122 35689999999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 57 GPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 57 Gp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
|-+++ ....+.+...++|||||=.|
T Consensus 117 GDGT~---------L~aa~~~~~~~~PvlGiN~G 141 (365)
T 3pfn_A 117 GDGTL---------LYASSLFQGSVPPVMAFHLG 141 (365)
T ss_dssp STTHH---------HHHHHHCSSSCCCEEEEESS
T ss_pred ChHHH---------HHHHHHhccCCCCEEEEcCC
Confidence 96531 22223333457999999876
No 168
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=50.64 E-value=17 Score=34.00 Aligned_cols=33 Identities=18% Similarity=-0.002 Sum_probs=21.1
Q ss_pred CCEEEEEeCCC---CcHHHHHHH----HHHC-CCEEEEEeC
Q 039743 5 PELVLILDYGS---QYTHLITRR----IRSL-SILSLCLSG 37 (531)
Q Consensus 5 ~~~I~IlD~G~---~~~~~i~r~----l~~~-G~~~~v~~~ 37 (531)
|++|+||.... +++..++++ +++. |++++++..
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl 41 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTP 41 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35799996442 456655554 4444 999988753
No 169
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=50.39 E-value=33 Score=27.51 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=39.2
Q ss_pred cceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCccc
Q 039743 460 VRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530 (531)
Q Consensus 460 ~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~ 530 (531)
++.|-+.|+ .+.+... +|.-+.++-..+-..+...+ .+++||..|-.+++.+||=|.+|
T Consensus 33 V~~v~v~~~------~V~v~l~-----lt~~~cp~~~~l~~~i~~al-~~l~gv~~V~V~l~~~p~W~~~~ 91 (103)
T 3cq1_A 33 IYDLVVEPP------RAYVRMT-----LTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEVEVTFEPPWTLAR 91 (103)
T ss_dssp EEEEEEETT------EEEEEEC-----CSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEEEECCSSCCCGGG
T ss_pred eEEEEEECC------EEEEEEE-----ECCCCCcHHHHHHHHHHHHH-HhCCCceeEEEEEecCCCCChHH
Confidence 567777765 2333331 13334444345555566666 68999999999999999988876
No 170
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=50.35 E-value=36 Score=31.54 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=44.3
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. -+.+.+++.|..+.+...+.+.+ .+...++||||+.+...+ ..
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----------~~ 73 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS----------QR 73 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC----------HH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC----------HH
Confidence 457776 44554533 34567778899888776554432 122568999999864321 23
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 74 ~~~~l~~~~iPvV~~ 88 (275)
T 3d8u_A 74 THQLLEASNTPVLEI 88 (275)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 455555569998765
No 171
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=50.21 E-value=35 Score=30.42 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=35.7
Q ss_pred CEEEEEeCCC--------------CcHHHHHHHHHHCCCEEEEEe-CCCChhcc----c--cCC--CCEEEEcCCCCC
Q 039743 6 ELVLILDYGS--------------QYTHLITRRIRSLSILSLCLS-GTCSLDDI----T--AKN--PRVVILSGGPHS 60 (531)
Q Consensus 6 ~~I~IlD~G~--------------~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~----~--~~~--~dgiIlsGGp~s 60 (531)
.+|+||--|+ .+...++.+|+++|+.+.... ..++.+.+ . ..+ +|.||.+||-+.
T Consensus 16 ~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 5788885552 235678999999999766432 12233322 1 233 899999999763
No 172
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=50.03 E-value=67 Score=30.88 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=44.0
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ |....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+...+ ..
T Consensus 64 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----------~~ 133 (332)
T 2o20_A 64 TTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD----------EK 133 (332)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC----------HH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC----------HH
Confidence 467777 55555533 345667788999888765544321 22468999999864221 12
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 134 ~~~~l~~~~iPvV~~ 148 (332)
T 2o20_A 134 IRTSLKNSRTPVVLV 148 (332)
T ss_dssp HHHHHHHHCCCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 344444569998765
No 173
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=49.73 E-value=60 Score=31.61 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=45.7
Q ss_pred CEEEEE--eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQY----THLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ +....| ...+.+.+++.|..+.+...+.+.+. +...++||||+.+... ...
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~----------~~~ 140 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH----------TEQ 140 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC----------CHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC----------CHH
Confidence 457777 444444 33456777889999988776544321 2246899999976432 124
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 141 ~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 141 TIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHCCSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 556666779998755
No 174
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=49.58 E-value=63 Score=27.48 Aligned_cols=29 Identities=0% Similarity=0.031 Sum_probs=21.9
Q ss_pred CCEEEEEeCC---CCcHHHHHHHHHHCCCEEE
Q 039743 5 PELVLILDYG---SQYTHLITRRIRSLSILSL 33 (531)
Q Consensus 5 ~~~I~IlD~G---~~~~~~i~r~l~~~G~~~~ 33 (531)
+.+|+|+-.+ +.....+++.|.+.|+.+.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~ 44 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVI 44 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEE
Confidence 3569999775 3567788999999998633
No 175
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=49.53 E-value=70 Score=29.75 Aligned_cols=72 Identities=8% Similarity=0.058 Sum_probs=43.2
Q ss_pred CEEEEE--e--CCCCcHH----HHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCCh
Q 039743 6 ELVLIL--D--YGSQYTH----LITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 6 ~~I~Il--D--~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
.+|+++ + ..+.|.. .+.+.+++.|..+.+...+.+.+ .+...++||||+.+... .
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~----------~ 89 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFL----------S 89 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSS----------C
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----------C
Confidence 467777 4 4445533 34566778899888876544432 12246899999976421 1
Q ss_pred HHHHHHHHh-CCCcEEEe
Q 039743 71 AGFLEWALS-NGVYVLGI 87 (531)
Q Consensus 71 ~~l~~~~~~-~~iPvLGI 87 (531)
...++.+.+ .++|+.-+
T Consensus 90 ~~~~~~l~~~~~iPvV~~ 107 (296)
T 3brq_A 90 VDEIDDIIDAHSQPIMVL 107 (296)
T ss_dssp HHHHHHHHHTCSSCEEEE
T ss_pred hHHHHHHHhcCCCCEEEE
Confidence 234455566 79998765
No 176
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=49.12 E-value=58 Score=30.15 Aligned_cols=73 Identities=10% Similarity=0.185 Sum_probs=43.4
Q ss_pred EEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ |....|... +.+.+++.|..+.+...+.+.+ .+...++||||+.+... + . ....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~----~---~-~~~~ 74 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS----D---A-VGNA 74 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSST----T---T-THHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh----H---H-HHHH
Confidence 46666 555555333 4566777898888766543322 12245789999975321 1 1 1234
Q ss_pred HHHHHhCCCcEEEe
Q 039743 74 LEWALSNGVYVLGI 87 (531)
Q Consensus 74 ~~~~~~~~iPvLGI 87 (531)
++.+.+.++|+.-+
T Consensus 75 ~~~~~~~~iPvV~i 88 (271)
T 2dri_A 75 VKMANQANIPVITL 88 (271)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCcEEEe
Confidence 56666679998755
No 177
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=49.07 E-value=34 Score=30.24 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHCCCEEEEEeC-CCChhcc----c----cCCCCEEEEcCCCCC
Q 039743 16 QYTHLITRRIRSLSILSLCLSG-TCSLDDI----T----AKNPRVVILSGGPHS 60 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~----~----~~~~dgiIlsGGp~s 60 (531)
.+...++++|+++|+.+..... .++.+.+ . ..++|.||.+||-+-
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 3456799999999998764321 2222222 1 246899999999773
No 178
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=49.07 E-value=30 Score=33.36 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=47.0
Q ss_pred CCCCCCEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCC--CCEEEEcCCCCCCCCCC
Q 039743 1 MENKPELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKN--PRVVILSGGPHSVHSPD 65 (531)
Q Consensus 1 ~~~~~~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~--~dgiIlsGGp~s~~~~~ 65 (531)
|.++..+|+++ +....|.. .+.+.+++.|+.+.+.....+.+. +...+ +||||+.+...+
T Consensus 1 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~----- 75 (332)
T 2rjo_A 1 MSLGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSA----- 75 (332)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHH-----
T ss_pred CCCCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHH-----
Confidence 45555678777 45555533 345667778998888765544321 22456 999999764210
Q ss_pred CCCChHHHHHHHHhCCCcEEEe
Q 039743 66 APAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGI 87 (531)
.....++.+.+.++|+.-+
T Consensus 76 ---~~~~~~~~~~~~~iPvV~~ 94 (332)
T 2rjo_A 76 ---DARVIVEACSKAGAYVTTI 94 (332)
T ss_dssp ---HHHHHHHHHHHHTCEEEEE
T ss_pred ---HHHHHHHHHHHCCCeEEEE
Confidence 0124555556669998765
No 179
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=47.91 E-value=31 Score=32.81 Aligned_cols=72 Identities=13% Similarity=-0.061 Sum_probs=44.4
Q ss_pred CEEEEE--e-----CCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLIL--D-----YGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~Il--D-----~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+++ + ....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+...+
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~------- 95 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD------- 95 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-------
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-------
Confidence 468877 4 3344433 355667778998887655443221 22468999999865321
Q ss_pred CChHHHHHHHHhCCCcEEEe
Q 039743 68 AFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGI 87 (531)
...++.+.+.++|+.-+
T Consensus 96 ---~~~~~~l~~~~iPvV~i 112 (305)
T 3huu_A 96 ---DPIEHLLNEFKVPYLIV 112 (305)
T ss_dssp ---CHHHHHHHHTTCCEEEE
T ss_pred ---cHHHHHHHHcCCCEEEE
Confidence 13455666779999755
No 180
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=47.88 E-value=43 Score=31.05 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=43.9
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+. ...
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~------------~~~ 76 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF------------NEN 76 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG------------GHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC------------ChH
Confidence 357776 44555533 355677788999988876654322 22468999999761 133
Q ss_pred HHH-HHHhCCCcEEEe
Q 039743 73 FLE-WALSNGVYVLGI 87 (531)
Q Consensus 73 l~~-~~~~~~iPvLGI 87 (531)
.++ .+.+.++|+.-+
T Consensus 77 ~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 77 IIENTLTDHHIPFVFI 92 (277)
T ss_dssp HHHHHHHHC-CCEEEG
T ss_pred HHHHHHHcCCCCEEEE
Confidence 456 667779998644
No 181
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=47.85 E-value=51 Score=31.87 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=45.1
Q ss_pred CEEEEE--eCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQY----THLITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
..|+++ +....| ...+.+.+++.|+.+.+...+.+.+. +...++||||+.+...+ ..
T Consensus 63 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~----------~~ 132 (339)
T 3h5o_A 63 RTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA----------EP 132 (339)
T ss_dssp CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC----------TT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC----------HH
Confidence 457777 444444 33456777889999988776544321 22468999999874321 12
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 133 ~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 133 FERILSQHALPVVYM 147 (339)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHhcCCCCEEEE
Confidence 344555669998754
No 182
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=47.58 E-value=39 Score=31.78 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=44.8
Q ss_pred CCEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCC--Chhc-------cccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 5 PELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTC--SLDD-------ITAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 5 ~~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~--~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
..+|+++ +....|.. .+.+.+++.|+.+.+...+. +.+. +...++||||+.+.......
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~------ 78 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE------ 78 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST------
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH------
Confidence 3567777 55555543 34566777899999887664 4221 22457999999865332111
Q ss_pred hHHHHHHHHhCCCcEEEe
Q 039743 70 PAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGI 87 (531)
..++.+. .++|+.-+
T Consensus 79 --~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 79 --HNLKSWV-GNTPVFAT 93 (304)
T ss_dssp --TTHHHHT-TTSCEEEC
T ss_pred --HHHHHHc-CCCCEEEe
Confidence 1234445 69999755
No 183
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=47.46 E-value=15 Score=32.41 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=35.0
Q ss_pred CEEEEEeCCC---------CcHHHHHHHHHHCCCEEEEEe-CCCChhcc----c--cC--CCCEEEEcCCCC
Q 039743 6 ELVLILDYGS---------QYTHLITRRIRSLSILSLCLS-GTCSLDDI----T--AK--NPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G~---------~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~----~--~~--~~dgiIlsGGp~ 59 (531)
+++.||--|+ .+...++.+|+++|+.+.... ..++.+.+ . .. ++|.||.+||-+
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 4677775553 356789999999998665322 12233222 1 22 689999999976
No 184
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=47.20 E-value=63 Score=33.14 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=53.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC---h--hccc---------------cCC-CCEEEEcCCCCCCCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS---L--DDIT---------------AKN-PRVVILSGGPHSVHSP 64 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~---~--~~~~---------------~~~-~dgiIlsGGp~s~~~~ 64 (531)
.+|+|+..|..-. +.|+.|.+.|..+.+...... . +.+. ..+ +|.||+|.|-. +
T Consensus 10 k~v~viG~G~sG~-s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~----~ 84 (451)
T 3lk7_A 10 KKVLVLGLARSGE-AAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIP----Y 84 (451)
T ss_dssp CEEEEECCTTTHH-HHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSC----T
T ss_pred CEEEEEeeCHHHH-HHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCC----C
Confidence 5899999987655 469999999999988765321 0 0110 123 67788876632 1
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCE
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGV 101 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~ 101 (531)
+ . ..+..+.++++||++ -.+++.....+.
T Consensus 85 ~----~-p~~~~a~~~gi~v~~---~~e~~~~~~~~~ 113 (451)
T 3lk7_A 85 N----N-PMVKKALEKQIPVLT---EVELAYLVSESQ 113 (451)
T ss_dssp T----S-HHHHHHHHTTCCEEC---HHHHHHHHCCSE
T ss_pred C----C-hhHHHHHHCCCcEEe---HHHHHHHhcCCC
Confidence 1 1 245667788999875 477777765443
No 185
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=47.12 E-value=52 Score=30.86 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=44.2
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|... +.+.+++.|+.+.+...+.+.+. +...++||||+.+.... . ..
T Consensus 21 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~-----~~ 91 (293)
T 2iks_A 21 RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPP----E-----HP 91 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCT----T-----CH
T ss_pred cEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC----c-----HH
Confidence 467777 455555333 45667788998888765544321 22468999999864321 1 12
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
+++.+.+.++|+.-+
T Consensus 92 ~~~~~~~~~iPvV~~ 106 (293)
T 2iks_A 92 FYQRWANDPFPIVAL 106 (293)
T ss_dssp HHHTTTTSSSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 444445568998754
No 186
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=46.76 E-value=61 Score=30.97 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=45.4
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEE-eCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCL-SGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~-~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+++ +.+..|... +.+.+++.|+.+.+. +.+.+.+ .+...++||||+.+...+ ...
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~--------~~~ 75 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPD--------GLC 75 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSS--------TTH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH--------HHH
Confidence 568877 555555433 456677789888765 3333322 122568999999753211 123
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
..++.+.++++|+.-+
T Consensus 76 ~~~~~a~~~gipvV~~ 91 (316)
T 1tjy_A 76 PALKRAMQRGVKILTW 91 (316)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCcCEEEEe
Confidence 4567777789999765
No 187
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=46.74 E-value=46 Score=32.33 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=47.4
Q ss_pred CEEEEE--eCCC-CcHH----HHHHHHHHCCCEEEEEeCCCChhc-------ccc--CCCCEEEEcCCCCCCCCCCCCCC
Q 039743 6 ELVLIL--DYGS-QYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITA--KNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 6 ~~I~Il--D~G~-~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~--~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
.+|+++ +..+ .|.. .+.+++++.|+.+.+...+.+.+. +.. .++||||+.+. . ..
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~-~--------~~ 74 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-Q--------YV 74 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-S--------SH
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc-h--------hh
Confidence 467777 3333 4433 355667778999998876554332 223 48999999752 1 11
Q ss_pred hHHHHHHHHhCCCcEEEee
Q 039743 70 PAGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC 88 (531)
...+++.+.+.++|+.-+.
T Consensus 75 ~~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 75 APQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 3456777778899998664
No 188
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=46.27 E-value=51 Score=30.88 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=42.9
Q ss_pred CEEEEE--eCCC--CcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCCh
Q 039743 6 ELVLIL--DYGS--QYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 6 ~~I~Il--D~G~--~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
.+|+|+ +... .|... +.+.+++.|..+.+...+.+.+. +...++||||+.+... .
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----------~ 78 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEP----------N 78 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCT----------T
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCC----------C
Confidence 567777 3332 45433 44566678998887755433221 1146899999986321 1
Q ss_pred HHHHHHHHhCCCcEEEe
Q 039743 71 AGFLEWALSNGVYVLGI 87 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGI 87 (531)
...++.+.+.++|+.-+
T Consensus 79 ~~~~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 79 DPRVRFMTERNMPFVTH 95 (288)
T ss_dssp CHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHhhCCCCEEEE
Confidence 13456666779999754
No 189
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.14 E-value=35 Score=27.80 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=43.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHH----CCCEEEEE--eCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 5 PELVLILDYGSQYTHLITRRIRS----LSILSLCL--SGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~----~G~~~~v~--~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
..+|+++=.++--+..+++.+++ .|.++++. ++..- ++. ..++|.++| ||.-.| ...++-+.+.
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~-~~~-~~~~DvvLL--gPQV~y------~~~~ik~~~~ 75 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAH-YDI-MGVYDLIIL--APQVRS------YYREMKVDAE 75 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSC-TTT-GGGCSEEEE--CGGGGG------GHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHH-Hhh-ccCCCEEEE--ChHHHH------HHHHHHHHhh
Confidence 35788885555556667766664 58888884 44432 222 356898888 454221 1234444444
Q ss_pred hCCCcEEEee
Q 039743 79 SNGVYVLGIC 88 (531)
Q Consensus 79 ~~~iPvLGIC 88 (531)
..++||.=|=
T Consensus 76 ~~~ipV~vI~ 85 (108)
T 3nbm_A 76 RLGIQIVATR 85 (108)
T ss_dssp TTTCEEEECC
T ss_pred hcCCcEEEeC
Confidence 5589997663
No 190
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=45.84 E-value=28 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=22.4
Q ss_pred CCEEEEEeCC-CCcHHHHH----HHHHHCCCEEEEEeCCC
Q 039743 5 PELVLILDYG-SQYTHLIT----RRIRSLSILSLCLSGTC 39 (531)
Q Consensus 5 ~~~I~IlD~G-~~~~~~i~----r~l~~~G~~~~v~~~~~ 39 (531)
|++|+||.+- .+++..++ +.+++.|++++++....
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 5689999542 23455444 55566799998887543
No 191
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=45.82 E-value=2.8 Score=27.46 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=12.8
Q ss_pred EEEeeHHHHHHHHHcC
Q 039743 84 VLGICYGLQLMVQKLD 99 (531)
Q Consensus 84 vLGIC~G~Qlla~~~G 99 (531)
.-|.|+|.|+|..+-|
T Consensus 32 tagacfgaqimvaakg 47 (48)
T 1ehs_A 32 TAGACFGAQIMVAAKG 47 (48)
T ss_dssp SCCTTTTTHHHHTTTT
T ss_pred ccccccchhHhhhccc
Confidence 4678999999987654
No 192
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=45.75 E-value=83 Score=29.26 Aligned_cols=73 Identities=10% Similarity=0.101 Sum_probs=43.4
Q ss_pred EEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ |....|... +.+.+++.|..+.+...+.+.+. +...++||||+.+... . . ....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~----~---~-~~~~ 74 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDS----D---A-VVTA 74 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSST----T---T-THHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCch----h---h-hHHH
Confidence 46666 555555333 44666778998887765443221 2246799999975311 1 1 1234
Q ss_pred HHHHHhCCCcEEEe
Q 039743 74 LEWALSNGVYVLGI 87 (531)
Q Consensus 74 ~~~~~~~~iPvLGI 87 (531)
++.+.+.++|+.-+
T Consensus 75 ~~~~~~~~iPvV~~ 88 (283)
T 2ioy_A 75 IKEANSKNIPVITI 88 (283)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCeEEEe
Confidence 56666779998765
No 193
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=45.39 E-value=37 Score=29.87 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=36.2
Q ss_pred CEEEEEeCCC-------CcHHHHHHHHHHCCCEEEEEe-CCCChhcc----c--cC--CCCEEEEcCCCCC
Q 039743 6 ELVLILDYGS-------QYTHLITRRIRSLSILSLCLS-GTCSLDDI----T--AK--NPRVVILSGGPHS 60 (531)
Q Consensus 6 ~~I~IlD~G~-------~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~----~--~~--~~dgiIlsGGp~s 60 (531)
+++.||--|+ .+...++++|+++|+.+.... ..++.+.+ . .. ++|.||.+||-+-
T Consensus 14 ~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 14 VRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp CEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred CEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 5788886554 345678999999998765332 12233222 1 33 7899999999763
No 194
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=45.14 E-value=49 Score=30.98 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=38.8
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEE-eCCCCh-------hccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCL-SGTCSL-------DDITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~-~~~~~~-------~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+++ |....|... +.+.+++.|..+.+. ....+. +.+...++||||+.+...+ .
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---~------- 78 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT---D------- 78 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-------------
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC---H-------
Confidence 468777 556666443 456667789988876 433221 1122567999999764321 1
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
..++.+.+.++|+.-+
T Consensus 79 ~~~~~l~~~~iPvV~~ 94 (290)
T 3clk_A 79 DNLQLLQSSDVPYCFL 94 (290)
T ss_dssp -CHHHHHCC--CEEEE
T ss_pred HHHHHHHhCCCCEEEE
Confidence 1234445568998765
No 195
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=44.36 E-value=13 Score=30.62 Aligned_cols=80 Identities=6% Similarity=0.013 Sum_probs=46.9
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
|+++ .+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.||+-- .. +.+ ..++++...+
T Consensus 1 M~~~-~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~---~~~----g~~~~~~l~~ 71 (142)
T 2qxy_A 1 MSLT-PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FE---GEE----SLNLIRRIRE 71 (142)
T ss_dssp --CC-CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TT---THH----HHHHHHHHHH
T ss_pred CCCC-CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-CC---CCc----HHHHHHHHHH
Confidence 4543 57999997777788888999999987764321111 1223345789888853 11 000 1234444433
Q ss_pred --CCCcEEEeeH
Q 039743 80 --NGVYVLGICY 89 (531)
Q Consensus 80 --~~iPvLGIC~ 89 (531)
.++|++.+.-
T Consensus 72 ~~~~~pii~ls~ 83 (142)
T 2qxy_A 72 EFPDTKVAVLSA 83 (142)
T ss_dssp HCTTCEEEEEES
T ss_pred HCCCCCEEEEEC
Confidence 3689988763
No 196
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=43.54 E-value=39 Score=30.43 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=37.3
Q ss_pred CEEEEEeCCCCc--HHHHH----HHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 6 ELVLILDYGSQY--THLIT----RRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~----r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
++|+|+ |||++ ++.+| +.+.+.|+.+.+.+.+...++ ..++|.+|| |.|. |+.+.|.-...+++...
T Consensus 22 ~kv~Iv-Y~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~~~--l~~~d~vi~-g~~T--y~G~~p~~~~~fl~~L~ 94 (191)
T 1bvy_F 22 TPLLVL-YGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGN--LPREGAVLI-VTAS--YNGHPPDNAKQFVDWLD 94 (191)
T ss_dssp CCEEEE-EECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGSTTC--CCSSSEEEE-EECC--BTTBCCTTTHHHHHHHH
T ss_pred CeEEEE-EECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhhhh--hhhCCeEEE-EEee--cCCCcCHHHHHHHHHHH
Confidence 457777 66654 55555 445556888888766542222 345677777 3332 43333444455666643
No 197
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=43.48 E-value=67 Score=30.83 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=43.3
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|... +.+.+++.|..+.+...+.+.+ .+...++||||+.+...+ ..
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----------~~ 130 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVT----------EE 130 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCC----------HH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC----------HH
Confidence 467777 555556433 4566677899888876543321 122467999999764321 13
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 131 ~~~~l~~~~iPvV~~ 145 (332)
T 2hsg_A 131 HVEELKKSPVPVVLA 145 (332)
T ss_dssp HHHHHTTSSSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 455555678998765
No 198
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=43.25 E-value=1.2e+02 Score=24.55 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=26.0
Q ss_pred cceeeccCCCCC--HHHHHHHH---HHHhCCcEEEEEEeCC
Q 039743 225 DHVICALSGGVD--STVAATLV---HKAIGDRLHCVFVDNG 260 (531)
Q Consensus 225 ~kvvvalSGGvD--S~v~a~l~---~k~~g~~v~~v~id~g 260 (531)
++++|++.|.-. |.-++..+ .+..+.+++.+|+-..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~ 42 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPS 42 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence 579999999888 66555444 3345889999998644
No 199
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=43.06 E-value=13 Score=32.62 Aligned_cols=67 Identities=9% Similarity=0.138 Sum_probs=34.4
Q ss_pred CCEEEEEeCCCC--cHHHHHHH----HHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCC-CCCCCCChHHHHHH
Q 039743 5 PELVLILDYGSQ--YTHLITRR----IRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVH-SPDAPAFPAGFLEW 76 (531)
Q Consensus 5 ~~~I~IlD~G~~--~~~~i~r~----l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~-~~~~~~~~~~l~~~ 76 (531)
|++|+|+ |+|+ ++..+|++ +.+.|+.+++++.+. +..++ .++|.||| |.| +| ....|......++.
T Consensus 9 ~~ki~I~-Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l--~~~d~ii~-g~p--t~g~G~~p~~~~~f~~~ 82 (167)
T 1ykg_A 9 MPGITII-SASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQI--ASEKLLIV-VTS--TQGEGEPPEEAVALHKF 82 (167)
T ss_dssp ---CEEE-EECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGG--GGCSEEEE-EEE--CBGGGBCCGGGHHHHHH
T ss_pred CCeEEEE-EECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHh--ccCCeEEE-EEc--ccCCCcCChhHHHHHHH
Confidence 4567777 5554 45555554 445577777776542 22333 46788877 333 34 22234434455555
Q ss_pred H
Q 039743 77 A 77 (531)
Q Consensus 77 ~ 77 (531)
.
T Consensus 83 l 83 (167)
T 1ykg_A 83 L 83 (167)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=42.79 E-value=90 Score=32.75 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=53.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hccc---------------cCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDIT---------------AKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~---------------~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|.++-.|+.-...+|+.|.+.|..+......... +.+. ..++|.||+|.|-. ++
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~----~~-- 93 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMK----RG-- 93 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCC----TT--
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcC----CC--
Confidence 679999999887777999999999999887653211 1111 12457777765532 11
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
. ..++.+.++++||++= .++++..
T Consensus 94 --~-p~l~~a~~~gi~v~~~---~e~l~~~ 117 (524)
T 3hn7_A 94 --M-DVIEYMLDTGLRYTSG---PQFLSEQ 117 (524)
T ss_dssp --S-HHHHHHHHHTCCEEEH---HHHHHHH
T ss_pred --C-HHHHHHHHCCCcEEEH---HHHHHHH
Confidence 1 2446677789999885 5777764
No 201
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=42.65 E-value=17 Score=29.82 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=45.6
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh---
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--- 79 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--- 79 (531)
++.+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.+|+--.-. +. -..++++...+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~---~~----~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMP---GM----DGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCS---SS----CHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC---CC----CHHHHHHHHHhhcc
Confidence 3468999997777788899999999987654321111 1112245688888742211 00 12345555544
Q ss_pred -CCCcEEEee
Q 039743 80 -NGVYVLGIC 88 (531)
Q Consensus 80 -~~iPvLGIC 88 (531)
..+||+-+.
T Consensus 79 ~~~~pii~~s 88 (142)
T 3cg4_A 79 EQGIAIVMLT 88 (142)
T ss_dssp CTTEEEEEEE
T ss_pred cCCCCEEEEE
Confidence 356777664
No 202
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=42.58 E-value=45 Score=31.39 Aligned_cols=72 Identities=7% Similarity=0.100 Sum_probs=44.7
Q ss_pred EEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ +....|.. .+.+.+++.|+.+.+.... +.+. +...++||||+.+... ......
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~--------~~~~~~ 74 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDP--------KLGSAI 74 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCG--------GGHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCc--------hhhHHH
Confidence 56666 44555533 3556677789888777653 3221 2246799999986421 113455
Q ss_pred HHHHHhCCCcEEEe
Q 039743 74 LEWALSNGVYVLGI 87 (531)
Q Consensus 74 ~~~~~~~~iPvLGI 87 (531)
++.+.+.++|+.-+
T Consensus 75 ~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 75 VAKARGYDMKVIAV 88 (306)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCcEEEe
Confidence 67777789999644
No 203
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=42.58 E-value=85 Score=29.09 Aligned_cols=72 Identities=7% Similarity=0.029 Sum_probs=42.9
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ +....|... +.+.+++.|..+.+...+.+.+. +...++||||+.+...+ ..
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----------~~ 77 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP----------EP 77 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC----------HH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC----------HH
Confidence 467777 455555333 44666678998888765544322 22468999999764321 12
Q ss_pred HHHHHHh-CCCcEEEe
Q 039743 73 FLEWALS-NGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~-~~iPvLGI 87 (531)
+.+...+ .++|+.-+
T Consensus 78 ~~~~l~~~~~iPvV~~ 93 (289)
T 1dbq_A 78 LLAMLEEYRHIPMVVM 93 (289)
T ss_dssp HHHHHHHTTTSCEEEE
T ss_pred HHHHHHhccCCCEEEE
Confidence 3333333 58998765
No 204
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=42.42 E-value=67 Score=27.13 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCEEEEEeCC---CCcHHHHHHHHHHCCCEEEEEeCCCC------------hhccccCCCCEEEEcCCCCCCC-------
Q 039743 5 PELVLILDYG---SQYTHLITRRIRSLSILSLCLSGTCS------------LDDITAKNPRVVILSGGPHSVH------- 62 (531)
Q Consensus 5 ~~~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~~~~~~------------~~~~~~~~~dgiIlsGGp~s~~------- 62 (531)
+.+|+|+-.. +...+.+++.+++.|+. +++.+.. .+++ ...+|.+++.=.+..+.
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~--V~~vnp~~~~i~G~~~~~s~~el-~~~vDlvii~vp~~~v~~v~~~~~ 90 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFE--VLPVNPNYDEIEGLKCYRSVREL-PKDVDVIVFVVPPKVGLQVAKEAV 90 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTCSEETTEECBSSGGGS-CTTCCEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCE--EEEeCCCCCeECCeeecCCHHHh-CCCCCEEEEEeCHHHHHHHHHHHH
Confidence 4679999663 34566789999999986 4444322 2222 23467776653322100
Q ss_pred --CC-----CCCCChHHHHHHHHhCCCcEEE-eeHHHH
Q 039743 63 --SP-----DAPAFPAGFLEWALSNGVYVLG-ICYGLQ 92 (531)
Q Consensus 63 --~~-----~~~~~~~~l~~~~~~~~iPvLG-IC~G~Q 92 (531)
.. ......+++.+.+.++|+.++| =|.|+.
T Consensus 91 ~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~igpnc~g~~ 128 (138)
T 1y81_A 91 EAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCIMVE 128 (138)
T ss_dssp HTTCCEEEECTTSCCHHHHHHHHHHTCEEECSCCHHHH
T ss_pred HcCCCEEEEcCccHHHHHHHHHHHCCCEEEcCCcceEE
Confidence 00 0011235666666667777777 777764
No 205
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=42.32 E-value=45 Score=29.47 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=36.0
Q ss_pred CEEEEEeCCC-------CcHHHHHHHHHHCCCEEEEEe-CCCChhcc----c---cC-CCCEEEEcCCCCC
Q 039743 6 ELVLILDYGS-------QYTHLITRRIRSLSILSLCLS-GTCSLDDI----T---AK-NPRVVILSGGPHS 60 (531)
Q Consensus 6 ~~I~IlD~G~-------~~~~~i~r~l~~~G~~~~v~~-~~~~~~~~----~---~~-~~dgiIlsGGp~s 60 (531)
+++.||--|+ .+...++++|+++|+.+.... ..++.+.+ . .. ++|.||.+||-+-
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 5788886664 335678999999998765332 12233222 1 22 4899999999763
No 206
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=42.27 E-value=79 Score=29.62 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=45.4
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCC-EEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSI-LSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~-~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+++ +....|... +.+.+++.|. .+.+.....+.+ .+...++||||+.+...+ ...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~--------~~~ 74 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA--------AAG 74 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGG--------GHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc--------hhH
Confidence 356666 455555333 4566777897 787776544332 122468999999754211 123
Q ss_pred HHHHHHHhCCCcEEEee
Q 039743 72 GFLEWALSNGVYVLGIC 88 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC 88 (531)
..++.+.+.++|+.-+.
T Consensus 75 ~~~~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 75 TVIEKARGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHTTTCCEEEES
T ss_pred HHHHHHHHCCCcEEEec
Confidence 45666667799997663
No 207
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=41.95 E-value=1.4e+02 Score=25.22 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=48.2
Q ss_pred CCEEEEEeCC---CCcHHHHHHHHHHCCCEEEEEeCCCC------------hhccccCCCCEEEEcCCCCCCCC------
Q 039743 5 PELVLILDYG---SQYTHLITRRIRSLSILSLCLSGTCS------------LDDITAKNPRVVILSGGPHSVHS------ 63 (531)
Q Consensus 5 ~~~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~~~~~~------------~~~~~~~~~dgiIlsGGp~s~~~------ 63 (531)
+.+|+|+-.+ +.+.+.+++.+++.|+. +++.+-. .+++ ...+|.+++.=-+..+.+
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~~~i~G~~~y~sl~~l-~~~vDlvvi~vp~~~~~~vv~~~~ 98 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKYEEVLGRKCYPSVLDI-PDKIEVVDLFVKPKLTMEYVEQAI 98 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTCSEETTEECBSSGGGC-SSCCSEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCCCeECCeeccCCHHHc-CCCCCEEEEEeCHHHHHHHHHHHH
Confidence 4579999765 45677888999999986 4443321 2222 234676666532210000
Q ss_pred ---C-----CCCCChHHHHHHHHhCCCcEEE-eeHHHHH
Q 039743 64 ---P-----DAPAFPAGFLEWALSNGVYVLG-ICYGLQL 93 (531)
Q Consensus 64 ---~-----~~~~~~~~l~~~~~~~~iPvLG-IC~G~Ql 93 (531)
. .......++.+.+.++|++++| =|.|...
T Consensus 99 ~~gi~~i~~~~g~~~~~l~~~a~~~Gi~vvGpnc~gv~~ 137 (144)
T 2d59_A 99 KKGAKVVWFQYNTYNREASKKADEAGLIIVANRCMMREH 137 (144)
T ss_dssp HHTCSEEEECTTCCCHHHHHHHHHTTCEEEESCCHHHHH
T ss_pred HcCCCEEEECCCchHHHHHHHHHHcCCEEEcCCchhhcc
Confidence 0 0001235666667777777775 5777654
No 208
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=41.91 E-value=21 Score=32.55 Aligned_cols=55 Identities=7% Similarity=0.113 Sum_probs=34.3
Q ss_pred CCEEEEEeCCC---------CcHHHHHHHHHHCCCE--E---EEEeCCCCh--hccc--cC--CCCEEEEcCCCC
Q 039743 5 PELVLILDYGS---------QYTHLITRRIRSLSIL--S---LCLSGTCSL--DDIT--AK--NPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD~G~---------~~~~~i~r~l~~~G~~--~---~v~~~~~~~--~~~~--~~--~~dgiIlsGGp~ 59 (531)
++++.||--|+ .+...++++|+++|+. + .++|.+.+. +.+. .. ++|.||.+||-+
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg 77 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG 77 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 45777775443 3466789999999865 2 344433211 1121 12 689999999977
No 209
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=41.88 E-value=24 Score=28.37 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=45.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~i 82 (531)
.+|+|+|-.......+.+.|+..|..+........ .+.+....+|.+|+--.-. +.+ ..++++...+ ..+
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~---~~~----g~~~~~~l~~~~~~~ 80 (130)
T 3eod_A 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP---RMN----GLKLLEHIRNRGDQT 80 (130)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHTTCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC---CCC----HHHHHHHHHhcCCCC
Confidence 48999998777788889999999987765321111 1122245689888843211 011 1344554444 357
Q ss_pred cEEEeeH
Q 039743 83 YVLGICY 89 (531)
Q Consensus 83 PvLGIC~ 89 (531)
|++-+.-
T Consensus 81 ~ii~~t~ 87 (130)
T 3eod_A 81 PVLVISA 87 (130)
T ss_dssp CEEEEEC
T ss_pred CEEEEEc
Confidence 8877653
No 210
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.78 E-value=14 Score=29.66 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=46.1
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh----
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS---- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~---- 79 (531)
+.+|+|+|-.......+.+.|++.|..+........ .+.+....+|.||+--.-. + .-..++++...+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-----~--~~g~~~~~~l~~~~~~ 75 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLP-----D--TSGLALVKQLRALPME 75 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCS-----S--SBHHHHHHHHHHSCCS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCC-----C--CCHHHHHHHHHhhhcc
Confidence 568999997777788899999999986654321111 1122356789888843211 0 012355555544
Q ss_pred CCCcEEEee
Q 039743 80 NGVYVLGIC 88 (531)
Q Consensus 80 ~~iPvLGIC 88 (531)
.++|++-+.
T Consensus 76 ~~~~ii~~s 84 (127)
T 3i42_A 76 KTSKFVAVS 84 (127)
T ss_dssp SCCEEEEEE
T ss_pred CCCCEEEEE
Confidence 357887664
No 211
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=41.67 E-value=30 Score=34.11 Aligned_cols=77 Identities=13% Similarity=0.000 Sum_probs=47.0
Q ss_pred CCEEEEE-eCCCC--c----HHHHHHHHHHCCCEEEEEeCCCC--hhc----cccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 5 PELVLIL-DYGSQ--Y----THLITRRIRSLSILSLCLSGTCS--LDD----ITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 5 ~~~I~Il-D~G~~--~----~~~i~r~l~~~G~~~~v~~~~~~--~~~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
|++++|+ .-.++ . ...+.+.|++.|+.+.+...... ..+ ....++|.||..||-+++ .
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv---------~ 94 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTL---------N 94 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHH---------H
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHH---------H
Confidence 4467666 33322 2 34577888899998887764432 111 223568999999996642 3
Q ss_pred HHHHHH--HhCCCcEEEeeHH
Q 039743 72 GFLEWA--LSNGVYVLGICYG 90 (531)
Q Consensus 72 ~l~~~~--~~~~iPvLGIC~G 90 (531)
++++.+ ...++|+.+|=.|
T Consensus 95 ~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 95 EVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHhCCCCCcEEEecCC
Confidence 445544 2357888887655
No 212
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=41.37 E-value=49 Score=33.23 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=45.0
Q ss_pred CCCEEEEEeCCCC--cHHHHH----HHHHHCCCEEEEEeCCC-Chhcc--ccCCCCEEEEcCCCCCCCCCCCCCChHHHH
Q 039743 4 KPELVLILDYGSQ--YTHLIT----RRIRSLSILSLCLSGTC-SLDDI--TAKNPRVVILSGGPHSVHSPDAPAFPAGFL 74 (531)
Q Consensus 4 ~~~~I~IlD~G~~--~~~~i~----r~l~~~G~~~~v~~~~~-~~~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~ 74 (531)
.|++|+|+ |+|. ++..++ +.+++.|++++++.... +..++ ...++|+|||. .|- |....+.....++
T Consensus 255 ~~~kv~ii-y~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiig-sP~--y~~~~~~~~k~fl 330 (414)
T 2q9u_A 255 CQKKVTVV-LDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFA-SPT--LNNTMMPSVAAAL 330 (414)
T ss_dssp CCSEEEEE-ECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEE-CCC--BTTBCCHHHHHHH
T ss_pred cCCeEEEE-EECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEE-cCc--cCcCchHHHHHHH
Confidence 35788888 4443 455444 45556788888876532 22211 13578999984 343 4443333344556
Q ss_pred HHHHh----CCCcEEEee
Q 039743 75 EWALS----NGVYVLGIC 88 (531)
Q Consensus 75 ~~~~~----~~iPvLGIC 88 (531)
++... .++|+.-+|
T Consensus 331 d~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 331 NYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHTTTTTSBEEEEE
T ss_pred HHHHhhcccCCCEEEEEE
Confidence 55432 467765444
No 213
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=41.07 E-value=59 Score=31.66 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=43.1
Q ss_pred EEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ |....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+... ....
T Consensus 68 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~----------~~~~ 137 (348)
T 3bil_A 68 TIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEE----------CANQ 137 (348)
T ss_dssp CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGG----------GHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC----------ChHH
Confidence 47776 55555533 345667788998888765544321 2246799999976422 1234
Q ss_pred HHHHHhCCCcEEEe
Q 039743 74 LEWALSNGVYVLGI 87 (531)
Q Consensus 74 ~~~~~~~~iPvLGI 87 (531)
++.+.+.++|+.-+
T Consensus 138 ~~~l~~~~iPvV~i 151 (348)
T 3bil_A 138 LEDLQKQGMPVVLV 151 (348)
T ss_dssp HHHHHHC-CCEEEE
T ss_pred HHHHHhCCCCEEEE
Confidence 55556679998755
No 214
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=40.89 E-value=30 Score=30.44 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=36.5
Q ss_pred CCEEEEEeCCC---------CcHHHHHHHHHHCCCEEE---EEeCCCChhcc----c--c-CCCCEEEEcCCCC
Q 039743 5 PELVLILDYGS---------QYTHLITRRIRSLSILSL---CLSGTCSLDDI----T--A-KNPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD~G~---------~~~~~i~r~l~~~G~~~~---v~~~~~~~~~~----~--~-~~~dgiIlsGGp~ 59 (531)
.++++||--|+ .+...++..|+++|+++. ++|.+ +.+ . . .++|.||.+||-+
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd---~~i~~al~~a~~~~~DlVittGG~s 77 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG---SPVGEALRKAIDDDVDVILTSGGTG 77 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS---HHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH---HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 36788885553 456789999999998765 44433 332 1 2 3789999999976
No 215
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=40.82 E-value=28 Score=28.32 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=33.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCC-CEEEEEeCCCC-hhccccCCCCEEEEc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLS-ILSLCLSGTCS-LDDITAKNPRVVILS 55 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G-~~~~v~~~~~~-~~~~~~~~~dgiIls 55 (531)
.+|+|+|-.......+.+.|+..| +.+........ .+.+....+|.+|+-
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D 66 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILD 66 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEe
Confidence 579999987777888999999999 76654322111 122234568988873
No 216
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=40.40 E-value=27 Score=28.56 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=46.8
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHH-CCCEEEEEeCCCC-hhcccc-CCCCEEEEcCCCCCCCCCCCC-CC-hHHHHH
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRS-LSILSLCLSGTCS-LDDITA-KNPRVVILSGGPHSVHSPDAP-AF-PAGFLE 75 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~-~G~~~~v~~~~~~-~~~~~~-~~~dgiIlsGGp~s~~~~~~~-~~-~~~l~~ 75 (531)
|++ +.+|+|+|-.......+.+.|+. .|+.+........ .+.+.. ..+|.||+-=. .+ .. ..++++
T Consensus 1 M~~-~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--------l~~~~~g~~~~~ 71 (140)
T 3lua_A 1 MSL-DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--------FPVEKEGLEVLS 71 (140)
T ss_dssp --C-CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--------SSSHHHHHHHHH
T ss_pred CCC-CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--------CCCCCcHHHHHH
Confidence 443 46899999777777888899999 8987764322111 112334 57898887311 11 11 124555
Q ss_pred HHHh----CCCcEEEee
Q 039743 76 WALS----NGVYVLGIC 88 (531)
Q Consensus 76 ~~~~----~~iPvLGIC 88 (531)
...+ .++||+-+.
T Consensus 72 ~l~~~~~~~~~~ii~ls 88 (140)
T 3lua_A 72 AIRNNSRTANTPVIIAT 88 (140)
T ss_dssp HHHHSGGGTTCCEEEEE
T ss_pred HHHhCcccCCCCEEEEe
Confidence 5444 478998776
No 217
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=39.85 E-value=62 Score=26.10 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=44.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh-C-CC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS-N-GV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-~-~i 82 (531)
.+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.+|+++. + ..++++...+ . .+
T Consensus 19 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~~~-------~----g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 19 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDK-------N----ALSFVSRIKEKHSSI 87 (137)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEECST-------T----HHHHHHHHHHHSTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEcCc-------c----HHHHHHHHHhcCCCc
Confidence 58999997777788889999999987664321111 11222457898882111 1 1234444333 4 78
Q ss_pred cEEEeeH
Q 039743 83 YVLGICY 89 (531)
Q Consensus 83 PvLGIC~ 89 (531)
|++-+.-
T Consensus 88 ~ii~ls~ 94 (137)
T 2pln_A 88 VVLVSSD 94 (137)
T ss_dssp EEEEEES
T ss_pred cEEEEeC
Confidence 9988763
No 218
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=39.52 E-value=45 Score=31.44 Aligned_cols=72 Identities=8% Similarity=-0.068 Sum_probs=43.8
Q ss_pred CEEEEEe-------CCCCcH----HHHHHHHHHCCCEEEEEeCCCChh-------ccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILD-------YGSQYT----HLITRRIRSLSILSLCLSGTCSLD-------DITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD-------~G~~~~----~~i~r~l~~~G~~~~v~~~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+|+= ....|. .-+.+.+++.|..+.+...+.+.+ .+...++||||+.+... .
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~----~--- 80 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE----N--- 80 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT----T---
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCccc----C---
Confidence 5677773 234443 335567778899887765543322 12256899999986432 1
Q ss_pred CChHHHHHHHHhCCCcEEEe
Q 039743 68 AFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGI 87 (531)
...++.+.+.++|+.-+
T Consensus 81 ---~~~~~~l~~~~iPvV~i 97 (295)
T 3hcw_A 81 ---DPIKQMLIDESMPFIVI 97 (295)
T ss_dssp ---CHHHHHHHHTTCCEEEE
T ss_pred ---hHHHHHHHhCCCCEEEE
Confidence 13455566679999754
No 219
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=39.42 E-value=90 Score=29.26 Aligned_cols=72 Identities=7% Similarity=0.046 Sum_probs=43.8
Q ss_pred CEEEEE------eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChh--c----cccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 6 ELVLIL------DYGSQYTH----LITRRIRSLSILSLCLSGTCSLD--D----ITAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 6 ~~I~Il------D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~--~----~~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
.+|+++ |+...|.. .+.+.+++.|..+.+...+.... . +...++||||+.+...+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~--------- 77 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPE--------- 77 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSS---------
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCC---------
Confidence 456665 34444433 35577778999988876542111 1 12458999999865321
Q ss_pred hHHHHHHHHhCCCcEEEe
Q 039743 70 PAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGI 87 (531)
...++.+.+.++|+.-+
T Consensus 78 -~~~~~~l~~~~iPvV~~ 94 (294)
T 3qk7_A 78 -DFRLQYLQKQNFPFLAL 94 (294)
T ss_dssp -CHHHHHHHHTTCCEEEE
T ss_pred -hHHHHHHHhCCCCEEEE
Confidence 13456666779999754
No 220
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=39.18 E-value=1.6e+02 Score=27.50 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=54.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHH---HhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHK---AIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k---~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
.++|++++.|.-.|.-++..+.+ ..+.+++.+++..........+++.+.+ +..|++....-. .+ +
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~--------~g--~ 238 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDKTADLRVMEEVI-GAEGIEVHVHIE--------SG--T 238 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCCHHHHHHHHHHH-HHTTCCEEEEEE--------CS--C
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchHHHHHHHHHHHH-HHcCCcEEEEEe--------cC--C
Confidence 46899999999877766655543 3478899999875443344455555533 445777433211 11 2
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEeccc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTL 339 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~ 339 (531)
|. +.+.+.+++.+ ++.|+.|+.
T Consensus 239 ~~-----------~~I~~~a~~~~------~dLlV~G~~ 260 (294)
T 3loq_A 239 PH-----------KAILAKREEIN------ATTIFMGSR 260 (294)
T ss_dssp HH-----------HHHHHHHHHTT------CSEEEEECC
T ss_pred HH-----------HHHHHHHHhcC------cCEEEEeCC
Confidence 22 33455666666 899999984
No 221
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=38.96 E-value=21 Score=30.57 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChh---ccccCCCCEEEEc
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLD---DITAKNPRVVILS 55 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~---~~~~~~~dgiIls 55 (531)
|.+++.+|+|+|-.......+.+.|+..|....+.......+ .+....+|.||+-
T Consensus 21 M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD 78 (164)
T 3t8y_A 21 MTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMD 78 (164)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred cccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEe
Confidence 334456899999777777788888888865554433332211 1224568988873
No 222
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=38.83 E-value=29 Score=31.77 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh-hccccCCCCEEEEc
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL-DDITAKNPRVVILS 55 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~~~~~dgiIls 55 (531)
|++++.+|+|+|-.......+.+.|+..|..+......... +.+....+|.+|+-
T Consensus 1 M~~m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD 56 (238)
T 2gwr_A 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLD 56 (238)
T ss_dssp -CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEE
T ss_pred CCcccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEe
Confidence 55544689999977777788889999999876543321111 11224468988874
No 223
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=38.83 E-value=1.4e+02 Score=28.52 Aligned_cols=72 Identities=7% Similarity=0.036 Sum_probs=42.7
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++ |....|.. .+.+.+++.|..+.+...+.+.+. +...++||||+.+...+ ..
T Consensus 59 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----------~~ 128 (340)
T 1qpz_A 59 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP----------EP 128 (340)
T ss_dssp SEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC----------HH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC----------hH
Confidence 467777 44555533 355667788998888765544322 22468999999764321 12
Q ss_pred HHHHHHh-CCCcEEEe
Q 039743 73 FLEWALS-NGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~-~~iPvLGI 87 (531)
.++...+ .++|+.-+
T Consensus 129 ~~~~l~~~~~iPvV~~ 144 (340)
T 1qpz_A 129 LLAMLEEYRHIPMVVM 144 (340)
T ss_dssp HHHHHHTTTTSCEEEE
T ss_pred HHHHHHhhCCCCEEEE
Confidence 3333333 58998755
No 224
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=38.73 E-value=8.4 Score=34.80 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=21.8
Q ss_pred CCEEEEEeCC---CCcHHHHHHH-----HHHCCCEEEEEeC
Q 039743 5 PELVLILDYG---SQYTHLITRR-----IRSLSILSLCLSG 37 (531)
Q Consensus 5 ~~~I~IlD~G---~~~~~~i~r~-----l~~~G~~~~v~~~ 37 (531)
|++|+|+... .+++..++++ +++.|.+++++..
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl 42 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHV 42 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4679998543 2566666655 4555888888764
No 225
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=38.70 E-value=34 Score=27.75 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=38.7
Q ss_pred CcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCccc
Q 039743 459 PVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530 (531)
Q Consensus 459 p~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~ 530 (531)
-++.|-+.||. .+.++.. +|.-+.++-..+-..+...+...++||..|--.++..||=|.+|
T Consensus 34 ~V~~I~v~~~~-----~V~V~lt-----lt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~W~~~~ 95 (108)
T 3lno_A 34 LVYDVTADENN-----NAVITMT-----MTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWSKER 95 (108)
T ss_dssp CEEEEEECTTC-----CEEEEEC-----CSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCSSCCCGGG
T ss_pred CceEEEECCCC-----eEEEEEE-----ECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCChHH
Confidence 35677777653 2333332 13333333333344444555367899999999999999998876
No 226
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=38.19 E-value=31 Score=30.40 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=19.3
Q ss_pred CCCEEEEEeC-CCCcHHHHHHHHHH-CCCEE
Q 039743 4 KPELVLILDY-GSQYTHLITRRIRS-LSILS 32 (531)
Q Consensus 4 ~~~~I~IlD~-G~~~~~~i~r~l~~-~G~~~ 32 (531)
++++|+|+=| .++++..+|+.+.+ +|.+.
T Consensus 12 ~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~ 42 (171)
T 4ici_A 12 SNSKILVAYFSATGTTARAAEKLGAAVGGDL 42 (171)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCe
Confidence 4567888844 45568888888865 46654
No 227
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=37.85 E-value=24 Score=36.21 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEe
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLS 36 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~ 36 (531)
+|++|+|++ +++....+++.++++|+++.++.
T Consensus 5 ~~~kiLI~g-~g~~a~~i~~aa~~~G~~~v~v~ 36 (446)
T 3ouz_A 5 EIKSILIAN-RGEIALRALRTIKEMGKKAICVY 36 (446)
T ss_dssp CCCEEEECC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccceEEEEC-CCHHHHHHHHHHHHcCCEEEEEE
Confidence 346899986 44567789999999999988773
No 228
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=37.73 E-value=24 Score=28.84 Aligned_cols=80 Identities=8% Similarity=0.051 Sum_probs=48.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh----
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS---- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~---- 79 (531)
+.+|+|+|-.......+.+.|++.|+.+........ .+.+....+|.||+-=.-. + .-..++++...+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-----~--~~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLP-----D--QDGVSLIRALRRDSRT 78 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCS-----S--SCHHHHHHHHHTSGGG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCC-----C--CCHHHHHHHHHhCccc
Confidence 368999997777788889999999988654432111 1223356789888832211 1 012345555443
Q ss_pred CCCcEEEeeHHH
Q 039743 80 NGVYVLGICYGL 91 (531)
Q Consensus 80 ~~iPvLGIC~G~ 91 (531)
.++|++-+.-..
T Consensus 79 ~~~~ii~~s~~~ 90 (140)
T 3grc_A 79 RDLAIVVVSANA 90 (140)
T ss_dssp TTCEEEEECTTH
T ss_pred CCCCEEEEecCC
Confidence 478998876543
No 229
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=37.49 E-value=61 Score=30.33 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=43.8
Q ss_pred CEEEEE--eC-CCCcHHH----HHHHHHHC-CCEEEEEeC---CCChh-------ccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLIL--DY-GSQYTHL----ITRRIRSL-SILSLCLSG---TCSLD-------DITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~Il--D~-G~~~~~~----i~r~l~~~-G~~~~v~~~---~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+++ +. ...|... +.+.+++. |..+.+... ..+.+ .+...++||||+.+....
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~------- 81 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQ------- 81 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGG-------
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChH-------
Confidence 457665 55 5566443 44666777 777776532 12221 123568999999865321
Q ss_pred CChHHHHHHHHhCCCcEEEee
Q 039743 68 AFPAGFLEWALSNGVYVLGIC 88 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC 88 (531)
.....++.+.+.++|+.-+.
T Consensus 82 -~~~~~~~~~~~~~iPvV~~~ 101 (304)
T 3gbv_A 82 -YTKGFTDALNELGIPYIYID 101 (304)
T ss_dssp -GTHHHHHHHHHHTCCEEEES
T ss_pred -HHHHHHHHHHHCCCeEEEEe
Confidence 12345666666799997553
No 230
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=37.34 E-value=45 Score=28.44 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=18.7
Q ss_pred CCEEEEEeC-CCCcHHHHHHHH-HHC-CCE
Q 039743 5 PELVLILDY-GSQYTHLITRRI-RSL-SIL 31 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l-~~~-G~~ 31 (531)
|++|+|+=| -.+++..+|+.+ +.+ |..
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~ 32 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSE 32 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCC
Confidence 356888843 345588899999 666 665
No 231
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=37.33 E-value=1.3e+02 Score=29.77 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=43.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccc-cCCCCEEEEcCCCCCCCCCCCCCChHH-HHHHHHhCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDIT-AKNPRVVILSGGPHSVHSPDAPAFPAG-FLEWALSNGV 82 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~-~~~~dgiIlsGGp~s~~~~~~~~~~~~-l~~~~~~~~i 82 (531)
|+||++.+.-+.....+.+++++.|+++...+...+.+.+. ..++|+|++.+.. .+..+ +++.+.+.++
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~---------~~~~~~~l~~~~~~~L 71 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPLG---------PVDEEVVYQKLSEYGV 71 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCSS---------CBCCHHHHHHHHHTTC
T ss_pred CceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCCC---------CcCHHHHHHhccccCc
Confidence 47899998655445555666677898887766433322222 5688999985321 23345 7776544344
Q ss_pred cEEEe
Q 039743 83 YVLGI 87 (531)
Q Consensus 83 PvLGI 87 (531)
-+++.
T Consensus 72 k~I~~ 76 (343)
T 2yq5_A 72 KCIGL 76 (343)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 44443
No 232
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=37.26 E-value=35 Score=32.31 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCEEEEEeCC-------CChhccccCCCCEEEEcCCCCCCC-------CCCCC-CChHHHHHHHHhCCCc
Q 039743 19 HLITRRIRSLSILSLCLSGT-------CSLDDITAKNPRVVILSGGPHSVH-------SPDAP-AFPAGFLEWALSNGVY 83 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~-------~~~~~~~~~~~dgiIlsGGp~s~~-------~~~~~-~~~~~l~~~~~~~~iP 83 (531)
..+.++|+..|+++++++.. ...++ +.+||.||+.+.+.... .+... .-..+.++...++|..
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~--L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg 120 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDE--LNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG 120 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHH--HHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhH--HhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence 35788999999999988432 22222 46899999998654211 11111 1134667777778999
Q ss_pred EEEee
Q 039743 84 VLGIC 88 (531)
Q Consensus 84 vLGIC 88 (531)
+++|.
T Consensus 121 ll~ig 125 (256)
T 2gk3_A 121 LLMIG 125 (256)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99993
No 233
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=36.99 E-value=26 Score=33.52 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=38.8
Q ss_pred EEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC--
Q 039743 7 LVLILDYGSQY----THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN-- 80 (531)
Q Consensus 7 ~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~-- 80 (531)
+|+|+-..... ...+.++|++.|+.+. ..++|.+|..||-++ .....+.+...
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~------------~~~~D~vv~lGGDGT---------~l~aa~~~~~~~~ 60 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYD------------DVEPEIVISIGGDGT---------FLSAFHQYEERLD 60 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSCEEC------------SSSCSEEEEEESHHH---------HHHHHHHTGGGTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEeC------------CCCCCEEEEEcCcHH---------HHHHHHHHhhcCC
Confidence 57776444332 2345666778887661 245799999999553 22333433333
Q ss_pred CCcEEEeeHH
Q 039743 81 GVYVLGICYG 90 (531)
Q Consensus 81 ~iPvLGIC~G 90 (531)
++|+|||=.|
T Consensus 61 ~~PilGIn~G 70 (272)
T 2i2c_A 61 EIAFIGIHTG 70 (272)
T ss_dssp TCEEEEEESS
T ss_pred CCCEEEEeCC
Confidence 8999999665
No 234
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=36.70 E-value=52 Score=28.82 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=45.7
Q ss_pred CEEEEEeCCCCc--HHHHHHHHHHCCCEEEEEeCCC-Ch-hccccCCC-CEEE-EcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 6 ELVLILDYGSQY--THLITRRIRSLSILSLCLSGTC-SL-DDITAKNP-RVVI-LSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~r~l~~~G~~~~v~~~~~-~~-~~~~~~~~-dgiI-lsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
++|.++-.|+++ ...++.++...|..+..++.+. .. ..+...+. |.+| +|-++.+ .-....++.+.+
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-------~~~~~~~~~ak~ 112 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL-------RDTVAALAGAAE 112 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC-------HHHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC-------HHHHHHHHHHHH
Confidence 579998888777 4446678888999988876322 11 11112222 4444 3332221 112456778888
Q ss_pred CCCcEEEee
Q 039743 80 NGVYVLGIC 88 (531)
Q Consensus 80 ~~iPvLGIC 88 (531)
+|.|+++|.
T Consensus 113 ~g~~vi~IT 121 (187)
T 3sho_A 113 RGVPTMALT 121 (187)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEe
Confidence 899999986
No 235
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.48 E-value=23 Score=28.55 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=34.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILS 55 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIls 55 (531)
.+|+|+|--......+.+.|++.|..+........ .+.+....+|.||+-
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d 57 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLD 57 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEe
Confidence 57999997777778888999999987764432111 112335678988874
No 236
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=36.42 E-value=1.2e+02 Score=28.62 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=43.6
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeC-CCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSG-TCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~-~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+++ +.+. |... +.+++++.|+.+.+... ..+.+. +...++||||+.+.... . ..
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-------~-~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPT-------A-VI 72 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTT-------T-TH
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChH-------H-HH
Confidence 357766 4444 5333 45667778998887642 223221 22468999999764221 1 12
Q ss_pred HHHHHHHhCCCcEEEee
Q 039743 72 GFLEWALSNGVYVLGIC 88 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC 88 (531)
..++.+.+.++|+.-+.
T Consensus 73 ~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLD 89 (313)
T ss_dssp HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHCCCeEEEeC
Confidence 34566667799998653
No 237
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=36.30 E-value=1.9e+02 Score=24.19 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=26.4
Q ss_pred ccceeeccCC-CCCHHHHHHHHH---HHhCCcEEEEEEeCC
Q 039743 224 EDHVICALSG-GVDSTVAATLVH---KAIGDRLHCVFVDNG 260 (531)
Q Consensus 224 ~~kvvvalSG-GvDS~v~a~l~~---k~~g~~v~~v~id~g 260 (531)
.++|+|++.| .-.|.-++..+. +..+.+++.+|+-..
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 64 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPG 64 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcC
Confidence 4689999999 666665554443 334789999998654
No 238
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=36.10 E-value=80 Score=31.58 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=40.8
Q ss_pred CEEEEE-eCCCCcHH----HHHHHHHHCCCEEEEEeCCCCh---hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 6 ELVLIL-DYGSQYTH----LITRRIRSLSILSLCLSGTCSL---DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 6 ~~I~Il-D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~---~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
.+|+|+ +....|.. -+.+.+++.|..+.+...+... +.+...++||||+. +. ...+++.+
T Consensus 26 ~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~--~~----------~~~~~~~l 93 (412)
T 4fe7_A 26 HRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIAD--FD----------DKQIEQAL 93 (412)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEE--TT----------CHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEe--cC----------ChHHHHHH
Confidence 357666 54555533 3556667789888877654332 22335679999992 11 23456666
Q ss_pred HhCCCcEEEe
Q 039743 78 LSNGVYVLGI 87 (531)
Q Consensus 78 ~~~~iPvLGI 87 (531)
.+.++|+.-+
T Consensus 94 ~~~~iPvV~i 103 (412)
T 4fe7_A 94 ADVDVPIVGV 103 (412)
T ss_dssp TTCCSCEEEE
T ss_pred hhCCCCEEEe
Confidence 6779999755
No 239
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=36.00 E-value=25 Score=28.84 Aligned_cols=78 Identities=15% Similarity=-0.046 Sum_probs=46.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh-hccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL-DDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS-- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-- 79 (531)
+.+|+|+|-.......+.+.|+..|..+......... +.+. ...+|.||+--.-. +. -..++++...+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~---~~----~g~~~~~~l~~~~ 75 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMP---KL----SGMDILREIKKIT 75 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCS---SS----CHHHHHHHHHHHC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCC---CC----cHHHHHHHHHHhC
Confidence 5689999977777888899999999876644321111 1122 34789888843211 11 12344444433
Q ss_pred CCCcEEEeeH
Q 039743 80 NGVYVLGICY 89 (531)
Q Consensus 80 ~~iPvLGIC~ 89 (531)
.++||+-+.-
T Consensus 76 ~~~~ii~ls~ 85 (143)
T 3jte_A 76 PHMAVIILTG 85 (143)
T ss_dssp TTCEEEEEEC
T ss_pred CCCeEEEEEC
Confidence 3688887763
No 240
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.80 E-value=16 Score=30.00 Aligned_cols=76 Identities=9% Similarity=0.143 Sum_probs=44.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCC--C-hHHHHHHHHh-
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPA--F-PAGFLEWALS- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~--~-~~~l~~~~~~- 79 (531)
+.+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.||+-=.- +. . ..++++...+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--------~~~~~~g~~~~~~l~~~ 77 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHL--------EDKKDSGIELLETLVKR 77 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTG--------GGBTTHHHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcC--------CCCCccHHHHHHHHHhC
Confidence 358999997777777888999988987664321111 111224457877773211 11 1 1345555544
Q ss_pred -CCCcEEEee
Q 039743 80 -NGVYVLGIC 88 (531)
Q Consensus 80 -~~iPvLGIC 88 (531)
.++|++-+.
T Consensus 78 ~~~~~ii~~s 87 (136)
T 3kto_A 78 GFHLPTIVMA 87 (136)
T ss_dssp TCCCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 368888765
No 241
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=35.78 E-value=15 Score=30.02 Aligned_cols=83 Identities=16% Similarity=0.052 Sum_probs=47.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~ 81 (531)
+.+|+|+|-.......+.+.|+..|..+........ .+.+....+|.+|+--........+. -..++++...+ .+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~--~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGN--EGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----C--CHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCc--cHHHHHHHHHhhCcC
Confidence 568999998777788889999999987764322111 11222456888888432110000000 12244444433 47
Q ss_pred CcEEEeeH
Q 039743 82 VYVLGICY 89 (531)
Q Consensus 82 iPvLGIC~ 89 (531)
+|++-+.-
T Consensus 81 ~~ii~ls~ 88 (140)
T 2qr3_A 81 LPVVLFTA 88 (140)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEC
Confidence 89988763
No 242
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=35.74 E-value=86 Score=29.31 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=42.7
Q ss_pred EEEEE-eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc------cccCCCCEEEEcCCCCCCCCCCCCCChHHHHH
Q 039743 7 LVLIL-DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD------ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLE 75 (531)
Q Consensus 7 ~I~Il-D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~ 75 (531)
+|+++ |....|.. .+.+.+++.|+.+.+...+.+.++ +...++||||+.+...+ ...++
T Consensus 14 ~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----------~~~~~ 83 (289)
T 3k9c_A 14 LLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD----------TDELG 83 (289)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC----------HHHHH
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC----------HHHHH
Confidence 44443 76666643 355677789999888765433211 22467899999875321 13455
Q ss_pred HHHhCCCcEEEe
Q 039743 76 WALSNGVYVLGI 87 (531)
Q Consensus 76 ~~~~~~iPvLGI 87 (531)
.+.+ ++|+.-+
T Consensus 84 ~~~~-~iPvV~i 94 (289)
T 3k9c_A 84 ALAD-RVPALVV 94 (289)
T ss_dssp HHHT-TSCEEEE
T ss_pred HHHc-CCCEEEE
Confidence 5445 9998754
No 243
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=35.28 E-value=42 Score=28.16 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=35.2
Q ss_pred EEEEEeCCCC--cHHHHHHH----HHHCCCEEEEEeCCC-ChhccccCC-CCEEEEcCCCCCCCCCC---CCCChHHHHH
Q 039743 7 LVLILDYGSQ--YTHLITRR----IRSLSILSLCLSGTC-SLDDITAKN-PRVVILSGGPHSVHSPD---APAFPAGFLE 75 (531)
Q Consensus 7 ~I~IlD~G~~--~~~~i~r~----l~~~G~~~~v~~~~~-~~~~~~~~~-~dgiIlsGGp~s~~~~~---~~~~~~~l~~ 75 (531)
+|+|+ |+|+ ++..++++ +++.|+.+++++.+. +.++ ..+ +|+||+. .|. |... .|......++
T Consensus 2 ki~ii-y~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~--l~~~~d~ii~~-~p~--y~~g~~~~p~~~~~fl~ 75 (147)
T 1f4p_A 2 KALIV-YGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGG--LFEGFDLVLLG-CST--WGDDSIELQDDFIPLFD 75 (147)
T ss_dssp EEEEE-EECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT--TTTTCSEEEEE-ECE--ECSSSCEECTTTHHHHH
T ss_pred eEEEE-EECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH--hcCcCCEEEEE-eCC--CCCCCcCCChhHHHHHH
Confidence 57777 4544 45555544 555688888876532 2222 346 8988884 332 4222 2434455665
Q ss_pred H
Q 039743 76 W 76 (531)
Q Consensus 76 ~ 76 (531)
+
T Consensus 76 ~ 76 (147)
T 1f4p_A 76 S 76 (147)
T ss_dssp T
T ss_pred H
Confidence 4
No 244
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=35.27 E-value=28 Score=32.63 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=33.5
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCE-EEEEeCCCChhc-------cccCCCCEEEEcC
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSIL-SLCLSGTCSLDD-------ITAKNPRVVILSG 56 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~-~~v~~~~~~~~~-------~~~~~~dgiIlsG 56 (531)
.+|+++ +....|.. .+.+.+++.|+. +.+.+.+.+.+. +...++||||+.+
T Consensus 11 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 567777 44454533 455777789999 777765544321 2256899999987
No 245
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=35.12 E-value=1e+02 Score=28.80 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=42.6
Q ss_pred EEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEe--CCCChh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 7 LVLIL--DYGSQYTH----LITRRIRSLSILSLCLS--GTCSLD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 7 ~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~--~~~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
+|+++ |....|.. .+.+.+++.|..+.+.. .+.+.+ .+...++||||+.+... . . ..
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~----~---~-~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS----V---N-LV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSS----S---T-TH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh----H---H-HH
Confidence 46655 55555543 34566777898888765 333321 12245799999975421 1 1 12
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
..++.+.+.++|+.-+
T Consensus 75 ~~~~~~~~~~iPvV~~ 90 (288)
T 1gud_A 75 MPVARAWKKGIYLVNL 90 (288)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCeEEEE
Confidence 3455566679998755
No 246
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=34.55 E-value=17 Score=30.48 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=45.2
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHH-CCCEEEEEeCCC--ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRS-LSILSLCLSGTC--SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~-~G~~~~v~~~~~--~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
|+.++.+|+|+|-.......+.+.|+. .|..+.....+. ..+.+....+|.||+--... +.+ ..++++..
T Consensus 1 m~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~---~~~----g~~~~~~l 73 (153)
T 3cz5_A 1 MSLSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP---GPG----GIEATRHI 73 (153)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS---SSC----HHHHHHHH
T ss_pred CCCcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC---CCC----HHHHHHHH
Confidence 566667899999877777788888887 676554222221 11122345689888843211 111 23445544
Q ss_pred Hh--CCCcEEEee
Q 039743 78 LS--NGVYVLGIC 88 (531)
Q Consensus 78 ~~--~~iPvLGIC 88 (531)
.+ ..+|++-+.
T Consensus 74 ~~~~~~~~ii~ls 86 (153)
T 3cz5_A 74 RQWDGAARILIFT 86 (153)
T ss_dssp HHHCTTCCEEEEE
T ss_pred HHhCCCCeEEEEE
Confidence 43 367887765
No 247
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=34.06 E-value=18 Score=29.51 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=46.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh-hccccCC-CCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL-DDITAKN-PRVVILSGGPHSVHSPDAPAFPAGFLEWALS-- 79 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~~~~-~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-- 79 (531)
.+.+|+|+|-.......+.+.|++.|+.+......... ..+.... +|.||+--.-. +. -..++++...+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~---~~----~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQ---PE----SGLDLIRTIRASE 78 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCS---SS----CHHHHHHHHHTST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCC---CC----CHHHHHHHHHhcC
Confidence 35689999977777888999999999877654221111 1122334 78887732211 01 12355555554
Q ss_pred -CCCcEEEeeH
Q 039743 80 -NGVYVLGICY 89 (531)
Q Consensus 80 -~~iPvLGIC~ 89 (531)
..+|++-+.-
T Consensus 79 ~~~~~ii~~s~ 89 (136)
T 3hdv_A 79 RAALSIIVVSG 89 (136)
T ss_dssp TTTCEEEEEES
T ss_pred CCCCCEEEEeC
Confidence 3578887763
No 248
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=33.63 E-value=61 Score=31.22 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=43.8
Q ss_pred CEEEEEeCCCCc--------HHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 6 ELVLILDYGSQY--------THLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 6 ~~I~IlD~G~~~--------~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
.+|+||.-|.+- ...++++|++.|++++.+..... ...+...++|.++..=... +.++ .....+++
T Consensus 14 ~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~--~ge~--~~~~~~le- 88 (317)
T 4eg0_A 14 GKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGG--YGEN--GQIQGALD- 88 (317)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSG--GGTS--SHHHHHHH-
T ss_pred ceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCC--CCch--HHHHHHHH-
Confidence 579999544432 35688999999999998864332 2233345788877532211 1221 11233333
Q ss_pred HHhCCCcEEEee
Q 039743 77 ALSNGVYVLGIC 88 (531)
Q Consensus 77 ~~~~~iPvLGIC 88 (531)
..++|++|--
T Consensus 89 --~~gip~~g~~ 98 (317)
T 4eg0_A 89 --FYGIRYTGSG 98 (317)
T ss_dssp --HHTCEESSCC
T ss_pred --HcCCCeeCcC
Confidence 3489987643
No 249
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=33.06 E-value=38 Score=28.12 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh-
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS- 79 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~- 79 (531)
+|.+|+|+|-...+...+.+.|+..|....+....... +.+....+|.||+--.-. +. -..++++...+
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~---~~----~g~~~~~~l~~~ 91 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMP---VK----TGLEVLEWIRSE 91 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCS---SS----CHHHHHHHHHHT
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCC---CC----cHHHHHHHHHHh
Confidence 45689999977777778888998887544444333222 123355789888742211 01 12345555444
Q ss_pred -CCCcEEEeeH
Q 039743 80 -NGVYVLGICY 89 (531)
Q Consensus 80 -~~iPvLGIC~ 89 (531)
.++||+-+.-
T Consensus 92 ~~~~~ii~ls~ 102 (150)
T 4e7p_A 92 KLETKVVVVTT 102 (150)
T ss_dssp TCSCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 3678887763
No 250
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.92 E-value=32 Score=26.84 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=33.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILS 55 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIls 55 (531)
|.+|+|+|-.......+.+.++..|..+........ .+.+....+|.+++-
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D 52 (116)
T 3a10_A 1 MKRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILD 52 (116)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEE
Confidence 357999998877788888999999987654321111 112224568888873
No 251
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=32.49 E-value=44 Score=30.96 Aligned_cols=67 Identities=12% Similarity=-0.071 Sum_probs=35.2
Q ss_pred eCCCCcHHH----HHHHHHHCCCEEEEEeCCCCh-------hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 12 DYGSQYTHL----ITRRIRSLSILSLCLSGTCSL-------DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 12 D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~-------~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|....|... +.+.+++.|..+.+.....+. +.+...++||||+.+...+ . ..++.+.+.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---~-------~~~~~~~~~ 77 (276)
T 2h0a_A 8 FVATEFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT---E-------RFEEGRLPT 77 (276)
T ss_dssp CSCCHHHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC----------------CCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC---H-------HHHHHHhhc
Confidence 555555433 446666789888776543221 1122457999999875321 1 123333446
Q ss_pred CCcEEEee
Q 039743 81 GVYVLGIC 88 (531)
Q Consensus 81 ~iPvLGIC 88 (531)
++|+.-+.
T Consensus 78 ~iPvV~~~ 85 (276)
T 2h0a_A 78 ERPVVLVD 85 (276)
T ss_dssp SSCEEEES
T ss_pred CCCEEEEe
Confidence 89987653
No 252
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=32.11 E-value=1.3e+02 Score=28.63 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=40.8
Q ss_pred CEEEEE--e-CCCCcHH----HHHHHHHHCCCEEEEEe--CC--CChh-------ccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLIL--D-YGSQYTH----LITRRIRSLSILSLCLS--GT--CSLD-------DITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~Il--D-~G~~~~~----~i~r~l~~~G~~~~v~~--~~--~~~~-------~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+++ + ....|.. .+.+.+++.|..+.+.. .+ .+.+ .+...++||||+++.+. .
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~----~--- 116 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTT----R--- 116 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSS----T---
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChH----h---
Confidence 357776 4 4555533 34566777898777652 33 2221 12246799999943211 0
Q ss_pred CChHHHHHHHHhCCCcEEEe
Q 039743 68 AFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGI 87 (531)
....++.+.+.++|+.-+
T Consensus 117 --~~~~~~~~~~~~ip~V~~ 134 (342)
T 1jx6_A 117 --HRKFVEHVLDSTNTKLIL 134 (342)
T ss_dssp --THHHHHHHHHHCSCEEEE
T ss_pred --HHHHHHHHHHcCCCEEEE
Confidence 123455555568998654
No 253
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=31.98 E-value=53 Score=35.87 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC 39 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~ 39 (531)
+++|+|++ +++....+++.++++|+++..+..+.
T Consensus 28 ~~kILI~g-~Geia~~iiraar~lGi~~vav~s~~ 61 (675)
T 3u9t_A 28 IQRLLVAN-RGEIACRVMRSARALGIGSVAVHSDI 61 (675)
T ss_dssp CSEEEECC-CHHHHHHHHHHHHHHTCEEEEEECSG
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46899987 55667789999999999998875443
No 254
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=31.74 E-value=1.3e+02 Score=28.54 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=43.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC----CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGT----CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~----~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+++.--.+....+.+.....|....--.+. +.........||.||+..- .-+...++.|..-+
T Consensus 105 ~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp----------~~e~~AI~EA~~lg 174 (253)
T 3bch_A 105 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDP----------RADHQPLTEASYVN 174 (253)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCT----------TTTHHHHHHHHHTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECC----------CccchHHHHHHHhC
Confidence 357777654444556667777778766543332 1111111345788887631 12345667778889
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
+|+.|+|
T Consensus 175 IPvIalv 181 (253)
T 3bch_A 175 LPTIALC 181 (253)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 9999998
No 255
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=31.64 E-value=1.9e+02 Score=26.39 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=45.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-Chhc--cc-cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDD--IT-AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~--~~-~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+++.--.|....+.+.....|....--.+.- .+-. +. ...||.+|+.. | .-+...++.|..-+
T Consensus 69 ~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~D-p---------~~e~~ai~EA~~l~ 138 (208)
T 1vi6_A 69 SKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVND-P---------AIDKQAVSEATAVG 138 (208)
T ss_dssp GGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESC-T---------TTTHHHHHHHHHTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEEC-C---------CcchhHHHHHHHhC
Confidence 3588887666666677777777887766433321 1100 11 24578888863 1 12345667777889
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
+|+.|+|
T Consensus 139 IPvIalv 145 (208)
T 1vi6_A 139 IPVVALC 145 (208)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 9999999
No 256
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=31.32 E-value=2.4e+02 Score=26.26 Aligned_cols=92 Identities=7% Similarity=-0.019 Sum_probs=53.3
Q ss_pred ccceeeccCCCCCHHHHHHHH---HHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 224 EDHVICALSGGVDSTVAATLV---HKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~---~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
.++++|++.|.-.|.-++..+ .+..+.+++.+|+..........+++.+.+ +..|+++...-... .+
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~---------g~ 76 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRDHSAALNDLAQEL-REEGYSVSTNQAWK---------DS 76 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSCCHHHHHHHHHHH-HHTTCCEEEEEECS---------SS
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHHHHHHHHHHHHHH-hhCCCeEEEEEEeC---------CC
Confidence 468999999887776665444 344588999999976422233344444423 34466554432100 01
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCC
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPD 342 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D 342 (531)
| .+.+.+.+++.+ +|.++.|+....
T Consensus 77 ~-----------~~~i~~~a~~~~------~dliV~G~~~~~ 101 (290)
T 3mt0_A 77 L-----------HQTIIAEQQAEG------CGLIIKQHFPDN 101 (290)
T ss_dssp H-----------HHHHHHHHHHHT------CSEEEEECCCSC
T ss_pred H-----------HHHHHHHHHhcC------CCEEEEecccCC
Confidence 1 133445566666 899999986543
No 257
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=31.24 E-value=43 Score=28.87 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=29.6
Q ss_pred CEEEEEeCCC--CcHHHHHHHHHH-CCCEEEEEeCCC-ChhccccCCCCEEEEc
Q 039743 6 ELVLILDYGS--QYTHLITRRIRS-LSILSLCLSGTC-SLDDITAKNPRVVILS 55 (531)
Q Consensus 6 ~~I~IlD~G~--~~~~~i~r~l~~-~G~~~~v~~~~~-~~~~~~~~~~dgiIls 55 (531)
++|+|+ |+| +++..+|+++.+ +|. +++.+.+. +..+ ..++|.|||.
T Consensus 2 ~k~~I~-Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~--l~~~d~ii~g 51 (164)
T 2bmv_A 2 GKIGIF-FGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQ--FNSFTKVILV 51 (164)
T ss_dssp CCEEEE-ECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHH--HTTCSEEEEE
T ss_pred CeEEEE-EECCCchHHHHHHHHHHHcCC-cEEEecccCCHhH--HhhCCEEEEE
Confidence 457777 555 458888888765 577 77776543 3333 3568888873
No 258
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=31.22 E-value=2.1e+02 Score=23.18 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=26.4
Q ss_pred cceeeccCCCCCHHHHHHHHH---HHhCCcEEEEEEeC
Q 039743 225 DHVICALSGGVDSTVAATLVH---KAIGDRLHCVFVDN 259 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~---k~~g~~v~~v~id~ 259 (531)
++++|++.|.-.|.-++..+. +..+.+++.+|+..
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 40 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFK 40 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 589999999888876665543 33588999999854
No 259
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=31.04 E-value=1.3e+02 Score=24.43 Aligned_cols=51 Identities=4% Similarity=0.061 Sum_probs=28.4
Q ss_pred CCEEEEE-eCCCCcHHHHH----HHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcC
Q 039743 5 PELVLIL-DYGSQYTHLIT----RRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSG 56 (531)
Q Consensus 5 ~~~I~Il-D~G~~~~~~i~----r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsG 56 (531)
+.+|+++ ..|.+-+..++ +.+.+.|+.+++...+.. .+.. ..++|.||.+.
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~-~~~~DlIist~ 77 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETY-MDGVHLICTTA 77 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTS-TTSCSEEEESS
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhc-cCCCCEEEECC
Confidence 4568877 66666555545 455567887665544322 2221 34678555543
No 260
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=30.77 E-value=39 Score=28.14 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=47.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~ 81 (531)
+.+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.||+--.-. +.+ ..++++...+ ..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~---~~~----g~~~~~~l~~~~~~ 79 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMP---EMG----GEVFLEQVAKSYPD 79 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCS---SSC----HHHHHHHHHHHCTT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCC---CCC----HHHHHHHHHHhCCC
Confidence 357999998877788889999999987664321111 1122245689888843211 011 1244444433 36
Q ss_pred CcEEEeeHH
Q 039743 82 VYVLGICYG 90 (531)
Q Consensus 82 iPvLGIC~G 90 (531)
+|++-+.-.
T Consensus 80 ~~ii~ls~~ 88 (154)
T 2rjn_A 80 IERVVISGY 88 (154)
T ss_dssp SEEEEEECG
T ss_pred CcEEEEecC
Confidence 899877643
No 261
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=30.73 E-value=1.8e+02 Score=23.50 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=26.8
Q ss_pred ccceeeccCCCCCHHHHHHHHH---HHhCCcEEEEEEeC
Q 039743 224 EDHVICALSGGVDSTVAATLVH---KAIGDRLHCVFVDN 259 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~---k~~g~~v~~v~id~ 259 (531)
.++++|++.|.-.|.-++..+. +..+.+++.+|+-.
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 43 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVD 43 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 4689999999888876665543 33478999999853
No 262
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=30.63 E-value=50 Score=28.95 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=31.6
Q ss_pred CEEEEEeCCC---------CcHHHHHHH----HHHCCCEEEEEe-CCCChhcc----c--cC-CCCEEEEcCCCC
Q 039743 6 ELVLILDYGS---------QYTHLITRR----IRSLSILSLCLS-GTCSLDDI----T--AK-NPRVVILSGGPH 59 (531)
Q Consensus 6 ~~I~IlD~G~---------~~~~~i~r~----l~~~G~~~~v~~-~~~~~~~~----~--~~-~~dgiIlsGGp~ 59 (531)
+++.||--|+ .+...++++ |+++|+.+..+. ..++.+.+ . .. ++|.||.+||-+
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4677775443 456778999 999998664322 12233222 1 22 589999999976
No 263
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=30.62 E-value=2e+02 Score=26.86 Aligned_cols=74 Identities=11% Similarity=0.022 Sum_probs=44.2
Q ss_pred CEEEEEeC--CCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLILDY--GSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~--G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++-. +..|.. -+.+.+++.|..+.+...+.+.+. +...++||||+.+.... . ...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-------~-~~~ 74 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVAT-------G-WEP 74 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSS-------S-CHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-------h-HHH
Confidence 35777733 333432 345677788999888765444321 22457999999764321 1 123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 75 ~~~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 75 VLKEAKDAEIPVFLL 89 (306)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCCEEEe
Confidence 556666679998754
No 264
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=30.30 E-value=1e+02 Score=26.80 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEeCCC---------CcHHHHHHHHHHC-----CCEEEEEe-CCCChhcc----c--c--CCCCEEEEcCC
Q 039743 1 MENKPELVLILDYGS---------QYTHLITRRIRSL-----SILSLCLS-GTCSLDDI----T--A--KNPRVVILSGG 57 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~---------~~~~~i~r~l~~~-----G~~~~v~~-~~~~~~~~----~--~--~~~dgiIlsGG 57 (531)
|+-+.++|+||--|+ .+...+++.+++. |+.+..+. ..++.+.+ . . .++|.||.+||
T Consensus 1 ~~~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 1 VPGPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp --CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCCCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 444556788885442 2345677888888 88665322 12233222 1 1 37899999999
Q ss_pred CC
Q 039743 58 PH 59 (531)
Q Consensus 58 p~ 59 (531)
-+
T Consensus 81 ~g 82 (167)
T 1uuy_A 81 TG 82 (167)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 265
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=30.12 E-value=1.2e+02 Score=28.45 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=26.4
Q ss_pred ccceeeccCCCCC-------HHHHHHHHH---HHhCCcEEEEEEeCC
Q 039743 224 EDHVICALSGGVD-------STVAATLVH---KAIGDRLHCVFVDNG 260 (531)
Q Consensus 224 ~~kvvvalSGGvD-------S~v~a~l~~---k~~g~~v~~v~id~g 260 (531)
.++|++++.|.-. |.-++..+. +..+.+++.+|+...
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~ 180 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPS 180 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 5789999999887 665554443 334789999998653
No 266
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=30.00 E-value=28 Score=28.51 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=47.3
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHCCC--EEEEEeCCCC-hhcccc----------CCCCEEEEcCCCCCCCCCCCCC
Q 039743 2 ENKPELVLILDYGSQYTHLITRRIRSLSI--LSLCLSGTCS-LDDITA----------KNPRVVILSGGPHSVHSPDAPA 68 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~~~~i~r~l~~~G~--~~~v~~~~~~-~~~~~~----------~~~dgiIlsGGp~s~~~~~~~~ 68 (531)
.+++.+|+|+|-.......+.+.|+..|. .+........ .+.+.. ..+|.+|+--.-. + .
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~-----~--~ 75 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLP-----G--T 75 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCS-----S--S
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCC-----C--C
Confidence 44556899999777778888999999987 4443321111 111222 5688888843211 1 0
Q ss_pred ChHHHHHHHHh----CCCcEEEeeH
Q 039743 69 FPAGFLEWALS----NGVYVLGICY 89 (531)
Q Consensus 69 ~~~~l~~~~~~----~~iPvLGIC~ 89 (531)
-..++++...+ ..+|++-+.-
T Consensus 76 ~g~~~~~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 76 DGREVLQEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp CHHHHHHHHTTSTTGGGSCEEEEES
T ss_pred CHHHHHHHHHhCcccCCCeEEEEeC
Confidence 12345555544 3578887753
No 267
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=29.03 E-value=27 Score=28.10 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=43.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHh--CC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALS--NG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~--~~ 81 (531)
+.+|+|+|-.......+.+.|+..+..+................+|.+|+--.- +.. ..++++...+ ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l--------~~~~g~~~~~~l~~~~~~ 74 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMM--------PDMDGIEVIRHLAEHKSP 74 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCT--------TTTHHHHHHHHHHHTTCC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCC--------CCCCHHHHHHHHHhCCCC
Confidence 468999997777777888888888655554432111111222238888874221 111 1345555444 35
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
.|++-+.
T Consensus 75 ~~ii~~s 81 (135)
T 3eqz_A 75 ASLILIS 81 (135)
T ss_dssp CEEEEEE
T ss_pred CCEEEEE
Confidence 7887665
No 268
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.37 E-value=36 Score=28.38 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=46.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~ 81 (531)
+.+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.||+--.-. +.+ ..++++...+ .+
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~---~~~----g~~~~~~l~~~~~~ 86 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLP---QMD----GPTLLARIHQQYPS 86 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCS---SSC----HHHHHHHHHHHCTT
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCC---cCc----HHHHHHHHHhHCCC
Confidence 358999998777788889999999987654321111 1223356789888842211 011 2344444433 46
Q ss_pred CcEEEeeH
Q 039743 82 VYVLGICY 89 (531)
Q Consensus 82 iPvLGIC~ 89 (531)
+||+-+.-
T Consensus 87 ~~ii~~s~ 94 (153)
T 3hv2_A 87 TTRILLTG 94 (153)
T ss_dssp SEEEEECC
T ss_pred CeEEEEEC
Confidence 88887663
No 269
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=28.29 E-value=81 Score=27.34 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCCEEEEEe--------------CCCCcHHHHHH----HHHHCCCEEEEEeCCCChh---ccc--cCCCCEEEEcCCCC
Q 039743 3 NKPELVLILD--------------YGSQYTHLITR----RIRSLSILSLCLSGTCSLD---DIT--AKNPRVVILSGGPH 59 (531)
Q Consensus 3 ~~~~~I~IlD--------------~G~~~~~~i~r----~l~~~G~~~~v~~~~~~~~---~~~--~~~~dgiIlsGGp~ 59 (531)
|.|.+|+||+ ||......+.+ .-.++|+.++....+..-+ .+. ..+.|||||-.|..
T Consensus 2 ~~m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~ 81 (151)
T 3u80_A 2 NAMTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAF 81 (151)
T ss_dssp --CEEEEEEECSCC------------CHHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTC
T ss_pred CCCCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchh
Confidence 4566899994 33333333344 4445888888876654221 111 23579999988765
Q ss_pred C
Q 039743 60 S 60 (531)
Q Consensus 60 s 60 (531)
+
T Consensus 82 T 82 (151)
T 3u80_A 82 T 82 (151)
T ss_dssp C
T ss_pred h
Confidence 4
No 270
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=28.20 E-value=1.3e+02 Score=27.56 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=35.7
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
.|++|..||+ .|.+-+.+-+-.-| .++.+|..|..- ..+.+ .|+++|||..+++-
T Consensus 3 ~riavl~Sg~-Gsnl~ali~~~~~~~l~~eI~~Visn~~~------a~v~~-~A~~~gIp~~~~~~ 60 (211)
T 3p9x_A 3 KRVAIFASGS-GTNAEAIIQSQKAGQLPCEVALLITDKPG------AKVVE-RVKVHEIPVCALDP 60 (211)
T ss_dssp CEEEEECCTT-CHHHHHHHHHHHTTCCSSEEEEEEESCSS------SHHHH-HHHTTTCCEEECCG
T ss_pred CEEEEEEeCC-chHHHHHHHHHHcCCCCcEEEEEEECCCC------cHHHH-HHHHcCCCEEEeCh
Confidence 5789999997 67655433332223 478888876432 13444 78899999887754
No 271
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=28.17 E-value=26 Score=28.52 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=45.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEE-EeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh-CC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLC-LSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS-NG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v-~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-~~ 81 (531)
+.+|+|+|-.......+.+.|+..|+.+.. ...... .+.+....+|.+|+--... .+.+ ..++++...+ ..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~--~~~~----g~~~~~~l~~~~~ 82 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLC--GALD----GVETAARLAAGCN 82 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCC--SSSC----HHHHHHHHHHHSC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCC--CCCC----HHHHHHHHHhCCC
Confidence 458999997777778888999998987763 321111 1122245689988852210 0011 1233333322 57
Q ss_pred CcEEEeeH
Q 039743 82 VYVLGICY 89 (531)
Q Consensus 82 iPvLGIC~ 89 (531)
+|++-+.-
T Consensus 83 ~~ii~ls~ 90 (140)
T 3cg0_A 83 LPIIFITS 90 (140)
T ss_dssp CCEEEEEC
T ss_pred CCEEEEec
Confidence 89987763
No 272
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=28.13 E-value=21 Score=31.95 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=27.1
Q ss_pred CCCCEEEEEeC-CCCcHHHHHHHHHH-CCCEEEEEeCCC--Chhc-c--ccCCCCEEEEcCCCC
Q 039743 3 NKPELVLILDY-GSQYTHLITRRIRS-LSILSLCLSGTC--SLDD-I--TAKNPRVVILSGGPH 59 (531)
Q Consensus 3 ~~~~~I~IlD~-G~~~~~~i~r~l~~-~G~~~~v~~~~~--~~~~-~--~~~~~dgiIlsGGp~ 59 (531)
|.|++|+|+-+ ..+++..+++++.+ ++.. .+.... +..+ . ...++|+|||. .|.
T Consensus 4 ~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~--~~~v~~~~~~~~~~~~~l~~~D~ii~g-sP~ 64 (193)
T 3d7n_A 4 NSSSNTVVVYHSGYGHTHRMAEAVAEGAEAT--LHAIDAEGNLSEDGWAALDAADAIIFG-TPT 64 (193)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTCE--EEECCTTSCCCHHHHHHHHHCSEEEEE-EEE
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHhhhc--ceEeeecCCCCHhHHHHHHHCCEEEEE-eCc
Confidence 55678999843 22457777777654 2322 222221 1111 1 13568999984 443
No 273
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=28.07 E-value=44 Score=27.19 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=45.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh----
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS---- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~---- 79 (531)
|.+|+|+|-.......+.+.|+..|..+........ .+.+....+|.+|+-=.- ++.. ..++++...+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l-----~~~~--g~~~~~~l~~~~~~ 75 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMM-----EPMD--GWETLERIKTDPAT 75 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC-----SSSC--HHHHHHHHHHSTTT
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCC-----CCCC--HHHHHHHHHcCccc
Confidence 568999998777788888999999987654321111 111224568888873221 1100 2345555443
Q ss_pred CCCcEEEee
Q 039743 80 NGVYVLGIC 88 (531)
Q Consensus 80 ~~iPvLGIC 88 (531)
..+||+-+.
T Consensus 76 ~~~~ii~ls 84 (138)
T 3c3m_A 76 RDIPVLMLT 84 (138)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEE
Confidence 257888775
No 274
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=27.72 E-value=43 Score=26.99 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=44.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHh--C
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALS--N 80 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~--~ 80 (531)
+.+|+|+|-.......+.+.|+..|..+........ .+.+....+|.+|+-=.- +.. ..++++...+ .
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l--------~~~~g~~~~~~l~~~~~ 74 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKL--------PDMEGTELLEKAHKLRP 74 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBC--------SSSBHHHHHHHHHHHCT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCC--------CCCchHHHHHHHHhhCC
Confidence 468999997777778888999988987653321111 111224568888873211 111 1244444433 3
Q ss_pred CCcEEEee
Q 039743 81 GVYVLGIC 88 (531)
Q Consensus 81 ~iPvLGIC 88 (531)
++|++-+.
T Consensus 75 ~~~ii~~s 82 (132)
T 3crn_A 75 GMKKIMVT 82 (132)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEe
Confidence 68887664
No 275
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.72 E-value=36 Score=27.67 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=46.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHH-CCCE-EEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--
Q 039743 5 PELVLILDYGSQYTHLITRRIRS-LSIL-SLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS-- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~-~G~~-~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~-- 79 (531)
+.+|+|+|-.......+.+.|+. .|+. +........ .+.+....+|.||+--... +. -..++++...+
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~---~~----~g~~~~~~l~~~~ 80 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMV---GM----DGFSICHRIKSTP 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCT---TS----CHHHHHHHHHTST
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccC---CC----cHHHHHHHHHhCc
Confidence 35799999877778888899998 8987 544322111 1222345789888853321 11 12355555554
Q ss_pred --CCCcEEEee
Q 039743 80 --NGVYVLGIC 88 (531)
Q Consensus 80 --~~iPvLGIC 88 (531)
.++|++-+.
T Consensus 81 ~~~~~~ii~~s 91 (143)
T 3cnb_A 81 ATANIIVIAMT 91 (143)
T ss_dssp TTTTSEEEEEE
T ss_pred cccCCcEEEEe
Confidence 368988775
No 276
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.49 E-value=52 Score=26.62 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=44.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhcccc-CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--C
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITA-KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--N 80 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~-~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~ 80 (531)
..+|+|+|-.......+.+.|+..|..+........ .+.+.. ..+|.+|+--.-. +. -..++++...+ .
T Consensus 15 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~-----~~--~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 15 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLV-----DL--SIFSLLDIVKEQTK 87 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCT-----TS--CHHHHHHHHTTSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCC-----CC--CHHHHHHHHHhhCC
Confidence 357999998777788888999999986654321111 122334 5789888742211 10 12345554433 2
Q ss_pred CCcEEEee
Q 039743 81 GVYVLGIC 88 (531)
Q Consensus 81 ~iPvLGIC 88 (531)
++|++-+.
T Consensus 88 ~~~ii~ls 95 (138)
T 2b4a_A 88 QPSVLILT 95 (138)
T ss_dssp CCEEEEEE
T ss_pred CCCEEEEE
Confidence 57777654
No 277
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=27.07 E-value=89 Score=31.03 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=42.8
Q ss_pred CEEEEEeCCCC--cHHHHH----HHHHHCCCEEEEEeCCC-Chhccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 6 ELVLILDYGSQ--YTHLIT----RRIRSLSILSLCLSGTC-SLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 6 ~~I~IlD~G~~--~~~~i~----r~l~~~G~~~~v~~~~~-~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
++|+|+ |+|. ++..++ +.+++.|++++++.... +..++. ..++|+||+. .|- |....+.....++++
T Consensus 257 ~k~~i~-~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiig-sP~--y~~~~~~~~k~~ld~ 332 (404)
T 2ohh_A 257 ERVTVI-YDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALG-APT--IYDEPYPSVGDLLMY 332 (404)
T ss_dssp SEEEEE-ECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEE-CCE--ETTEECTHHHHHHHH
T ss_pred CcEEEE-EECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE-Ccc--ccccchHHHHHHHHH
Confidence 567777 4443 355444 55555788888887643 232211 3578999984 332 333333334556665
Q ss_pred HHh------CCCcEEEee
Q 039743 77 ALS------NGVYVLGIC 88 (531)
Q Consensus 77 ~~~------~~iPvLGIC 88 (531)
... +++|+.-+|
T Consensus 333 l~~~~~~~l~~k~~~~~~ 350 (404)
T 2ohh_A 333 LRGLKFNRTLTRKALVFG 350 (404)
T ss_dssp HHHHCGGGTCCEEEEEEE
T ss_pred hhhccccccCCCEEEEEE
Confidence 432 355655443
No 278
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=26.95 E-value=29 Score=27.46 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=45.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh----C
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS----N 80 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~----~ 80 (531)
.+|+|+|-.......+.+.|+..|..+........ .+.+....+|.+|+--.-.. +. -..++++...+ .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~--~~----~g~~~~~~l~~~~~~~ 79 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSA--GQ----NGYLICGKLKKDDDLK 79 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGG--GC----BHHHHHHHHHHSTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCC--CC----CHHHHHHHHhcCcccc
Confidence 47999997777788889999998987764321111 11122446898887422110 00 12345555544 3
Q ss_pred CCcEEEe
Q 039743 81 GVYVLGI 87 (531)
Q Consensus 81 ~iPvLGI 87 (531)
++|++-+
T Consensus 80 ~~~ii~~ 86 (127)
T 2gkg_A 80 NVPIVII 86 (127)
T ss_dssp TSCEEEE
T ss_pred CCCEEEE
Confidence 6888877
No 279
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=26.79 E-value=60 Score=25.60 Aligned_cols=75 Identities=9% Similarity=0.137 Sum_probs=43.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHh----
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALS---- 79 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~---- 79 (531)
.+|+|+|-.......+.+.++..|..+........ .+.+....+|.+++-=.- +.. ..++++...+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l--------~~~~g~~~~~~l~~~~~~ 74 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWML--------PGGSGIQFIKHLRRESMT 74 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEE--------TTEEHHHHHHHHHTSTTT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecCC--------CCCCHHHHHHHHHhCccc
Confidence 57999997777777888999999987654321111 111224468888763110 111 1345555543
Q ss_pred CCCcEEEee
Q 039743 80 NGVYVLGIC 88 (531)
Q Consensus 80 ~~iPvLGIC 88 (531)
.++|++-+.
T Consensus 75 ~~~~ii~~s 83 (127)
T 2jba_A 75 RDIPVVMLT 83 (127)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEe
Confidence 357887664
No 280
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=26.43 E-value=2e+02 Score=26.39 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=49.4
Q ss_pred CEEEEEeCCCCc--HHHHHHHHHH---CCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCC-CCChHHHHHHHH
Q 039743 6 ELVLILDYGSQY--THLITRRIRS---LSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDA-PAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~r~l~~---~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~-~~~~~~l~~~~~ 78 (531)
++|+|+ |||++ ++.+|+.|.+ .|+.+.+.+.+. +.+++ .+.+.+|+-- +.|..+. |.-...+++...
T Consensus 41 ~kv~Il-YgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~~l--~~~~~vI~~t---sTyG~Ge~Pdna~~F~~~L~ 114 (219)
T 3hr4_A 41 VRVTIL-FATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCL--EEERLLLVVT---STFGNGDCPGNGEKLKKSLF 114 (219)
T ss_dssp CEEEEE-EECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGGGG--GTCSEEEEEE---ECBTTTBCCGGGHHHHHHHH
T ss_pred CcEEEE-EECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHhHh--ccCCeEEEEE---eccCCCcCCHHHHHHHHHHH
Confidence 467777 77766 6666655543 578888876543 33444 4567777632 2343332 332344555544
Q ss_pred hC-----C--CcEEEe--------eHHHHHHHH---HcCCEE
Q 039743 79 SN-----G--VYVLGI--------CYGLQLMVQ---KLDGVV 102 (531)
Q Consensus 79 ~~-----~--iPvLGI--------C~G~Qlla~---~~GG~v 102 (531)
.. + .-|||. |..+..|.. .+|++.
T Consensus 115 ~~~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~ 156 (219)
T 3hr4_A 115 MLKELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQ 156 (219)
T ss_dssp HCCCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEE
T ss_pred hcchhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCE
Confidence 32 2 346775 555555554 346654
No 281
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.33 E-value=28 Score=28.64 Aligned_cols=78 Identities=5% Similarity=-0.027 Sum_probs=47.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh----
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS---- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~---- 79 (531)
+.+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.||+--... +. -..++++...+
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~---~~----~g~~~~~~l~~~~~~ 80 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMP---KI----SGMDLFNSLKKNPQT 80 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCS---SS----CHHHHHHHHHTSTTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCC---CC----CHHHHHHHHHcCccc
Confidence 357999998888888899999998876654321111 1112244689988843211 11 12355555554
Q ss_pred CCCcEEEeeH
Q 039743 80 NGVYVLGICY 89 (531)
Q Consensus 80 ~~iPvLGIC~ 89 (531)
.++||+-+.-
T Consensus 81 ~~~pii~ls~ 90 (147)
T 2zay_A 81 ASIPVIALSG 90 (147)
T ss_dssp TTSCEEEEES
T ss_pred CCCCEEEEeC
Confidence 4689987764
No 282
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.22 E-value=1.5e+02 Score=28.57 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=42.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC----CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGT----CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~----~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+++.--.+....+.+.....|....--.+. +.........||.||+..- .-+...++.|..-+
T Consensus 72 ~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp----------~~e~~AI~EA~~lg 141 (295)
T 2zkq_b 72 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDP----------RADHQPLTEASYVN 141 (295)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCT----------TTTHHHHHHHHHHT
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCC----------CcchhHHHHHHHhC
Confidence 357777654444455666666778766543221 1111111345788887631 12345666777779
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
||+.|+|
T Consensus 142 IPvIalv 148 (295)
T 2zkq_b 142 LPTIALC 148 (295)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 9999998
No 283
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=25.92 E-value=48 Score=27.93 Aligned_cols=69 Identities=25% Similarity=0.108 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChhccc--c-CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHH
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLDDIT--A-KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMV 95 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~~~~--~-~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla 95 (531)
..+.+.++.-.....+.|-+.....+. . .+..+|||+||.. ..+.+++.|.+.++|||-+=+..--.+
T Consensus 42 ~~~~~~~~~~~~~l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~---------~~~~i~~~A~~~~ipvl~t~~~T~~~~ 112 (139)
T 2ioj_A 42 QSALRYLREARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLE---------PVQLVLTKAEERGVPVILTGHDTLTAV 112 (139)
T ss_dssp HHHHHHHHTCSSEEEEEETTCHHHHHHHTTCTTEEEEEEETTCC---------CCHHHHHHHHHHTCCEEECSSCHHHHH
T ss_pred HHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCCCCcEEEEcCCCC---------CCHHHHHHHHHCCCeEEEECCCHHHHH
Confidence 345556654322566665554321111 2 3567999999943 246778888888999998876655544
Q ss_pred H
Q 039743 96 Q 96 (531)
Q Consensus 96 ~ 96 (531)
.
T Consensus 113 ~ 113 (139)
T 2ioj_A 113 S 113 (139)
T ss_dssp H
T ss_pred H
Confidence 4
No 284
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=25.79 E-value=26 Score=28.51 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~ 81 (531)
+.+|+|+|-.......+.+.|++.|..+........ .+.+....+|.||+--.-. +. -..++++...+ ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~---~~----~g~~~~~~l~~~~~~ 79 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMP---KL----GGLEMLDRIKAGGAK 79 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCS---SS----CHHHHHHHHHHTTCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCC---CC----CHHHHHHHHHhcCCC
Confidence 357999998777778888999987776655432111 1122245789888853311 11 12345555444 35
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
.|++-+.
T Consensus 80 ~~ii~~s 86 (137)
T 3hdg_A 80 PYVIVIS 86 (137)
T ss_dssp CEEEECC
T ss_pred CcEEEEe
Confidence 7887765
No 285
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=25.73 E-value=2.3e+02 Score=26.70 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=43.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC----ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC----SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~----~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+++.--.+....+.+.-...|....--.+.- .........||.||+.. | .-+...++.|..-+
T Consensus 71 ~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~D-p---------~~d~~ai~EA~~l~ 140 (252)
T 3u5c_A 71 EDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTD-P---------RSDAQAIKEASYVN 140 (252)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESC-T---------TTTHHHHHHHHTTT
T ss_pred CEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeC-C---------ccchHHHHHHHHcC
Confidence 3577775444444556677777887665432211 11111134578888863 1 22445667777889
Q ss_pred CcEEEee
Q 039743 82 VYVLGIC 88 (531)
Q Consensus 82 iPvLGIC 88 (531)
+|+.|+|
T Consensus 141 IP~Ial~ 147 (252)
T 3u5c_A 141 IPVIALT 147 (252)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 9999999
No 286
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=25.48 E-value=82 Score=32.08 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 16 QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
.+...++..|+++|+.+..+.. .++.+.+. ..++|.||.+||-+
T Consensus 204 sn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 204 TNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred CchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCC
Confidence 3467789999999997764322 22333321 23689999999976
No 287
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=25.36 E-value=62 Score=29.08 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=35.2
Q ss_pred CCEEEEEeCCC---------CcHHHHHHHHHH---CCCEEEEEe-CCCChhcc----c--cC--CCCEEEEcCCCC
Q 039743 5 PELVLILDYGS---------QYTHLITRRIRS---LSILSLCLS-GTCSLDDI----T--AK--NPRVVILSGGPH 59 (531)
Q Consensus 5 ~~~I~IlD~G~---------~~~~~i~r~l~~---~G~~~~v~~-~~~~~~~~----~--~~--~~dgiIlsGGp~ 59 (531)
.+++.||--|+ .+...++.+|++ +|+.+.... ..++.+.+ . .. ++|.||.+||-+
T Consensus 14 ~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg 89 (189)
T 1jlj_A 14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTG 89 (189)
T ss_dssp CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCC
Confidence 35788886553 345678899998 898765332 12233222 1 12 689999999976
No 288
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=25.24 E-value=1.3e+02 Score=28.96 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=35.7
Q ss_pred ccceeeccCCCCCHHHHHHHHHH-HhC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 224 EDHVICALSGGVDSTVAATLVHK-AIG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k-~~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
..|++|..||. +|.+-+ |+.+ .-| .++.+|..|+.- +.. +|+++|||+..++.
T Consensus 90 ~~ri~vl~Sg~-g~~l~~-ll~~~~~g~l~~~i~~Visn~~~--------~~~-~A~~~gIp~~~~~~ 146 (286)
T 3n0v_A 90 RPKVVIMVSKA-DHCLND-LLYRQRIGQLGMDVVAVVSNHPD--------LEP-LAHWHKIPYYHFAL 146 (286)
T ss_dssp CCEEEEEESSC-CHHHHH-HHHHHHTTSSCCEEEEEEESSST--------THH-HHHHTTCCEEECCC
T ss_pred CcEEEEEEeCC-CCCHHH-HHHHHHCCCCCcEEEEEEeCcHH--------HHH-HHHHcCCCEEEeCC
Confidence 45899999998 565444 4433 223 578888877642 223 68889999988765
No 289
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=25.22 E-value=1.9e+02 Score=23.24 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=38.7
Q ss_pred ccceeeccCCCCCHHHHHHHHHHH---hCCcEEEEEEeCCCCC---------------hhHHHHHHHHHHHhCCCcEEEE
Q 039743 224 EDHVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDNGLLR---------------YKERERVMDTFEKDLHLPVTCV 285 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~---~g~~v~~v~id~g~~~---------------~~e~~~~~~~la~~lgi~~~vv 285 (531)
.-|+++..+||.-|+.++.-+.++ .|.++.......+... ....++.++ .++..|+|+.+|
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~-~~~~~~ipV~vI 84 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKV-DAERLGIQIVAT 84 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHH-HHTTTTCEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHH-HhhhcCCcEEEe
Confidence 347999999999888777666554 3555554433332211 112344444 566778998888
Q ss_pred ECc
Q 039743 286 DAT 288 (531)
Q Consensus 286 d~~ 288 (531)
|..
T Consensus 85 ~~~ 87 (108)
T 3nbm_A 85 RGM 87 (108)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 290
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.19 E-value=1.5e+02 Score=27.17 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=33.4
Q ss_pred CCCCCEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCC
Q 039743 2 ENKPELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGG 57 (531)
Q Consensus 2 ~~~~~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGG 57 (531)
.++..+|+++ +....|... +.+.+++.|+.+.+...+ +.+. +...++|||| .+.
T Consensus 2 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 2 SLRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp --CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred CCccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecC
Confidence 3444678777 555555433 456677789999888765 3221 2246899999 543
No 291
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=25.13 E-value=2.6e+02 Score=22.32 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=25.9
Q ss_pred cceeeccCCCCCHHHHHHHHH---HHhCCcEEEEEEeC
Q 039743 225 DHVICALSGGVDSTVAATLVH---KAIGDRLHCVFVDN 259 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~---k~~g~~v~~v~id~ 259 (531)
+++++++.|.-.|.-++..+. +..+.+++.+|+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 40 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYE 40 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEec
Confidence 589999999888876554443 33578999999864
No 292
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.95 E-value=38 Score=27.16 Aligned_cols=79 Identities=16% Similarity=0.054 Sum_probs=43.4
Q ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
|.++ .+|+|+|-.......+...++ .|..+........ .+.+....+|.||+--.-. +. -..++++...+
T Consensus 1 M~~~-~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~---~~----~g~~~~~~l~~ 71 (133)
T 3nhm_A 1 MSLK-PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMD---GM----DGYALCGHFRS 71 (133)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCS---SS----CHHHHHHHHHH
T ss_pred CCCC-CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCC---CC----CHHHHHHHHHh
Confidence 4433 579999977666777777777 7877654422111 1123356789888842211 01 12355555554
Q ss_pred C----CCcEEEee
Q 039743 80 N----GVYVLGIC 88 (531)
Q Consensus 80 ~----~iPvLGIC 88 (531)
. ++||+-+.
T Consensus 72 ~~~~~~~pii~~s 84 (133)
T 3nhm_A 72 EPTLKHIPVIFVS 84 (133)
T ss_dssp STTTTTCCEEEEE
T ss_pred CCccCCCCEEEEe
Confidence 3 67887765
No 293
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=24.93 E-value=2.5e+02 Score=26.94 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=23.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEE
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLC 34 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v 34 (531)
+|.+|+||-.|+.....+++.+++.+.+..-
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVS 32 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 3578999998766677888999988876553
No 294
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=24.48 E-value=57 Score=26.52 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=45.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHh---
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALS--- 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~--- 79 (531)
+.+|+|+|--......+.+.|+..|+.+........ .+.+....+|.+++-=. .|.. ..++++...+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--------lp~~~g~~~~~~lr~~~~ 75 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--------LPGIDGYTLCKRVRQHPL 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--------CSSSCHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--------CCCCCHHHHHHHHHcCCC
Confidence 457999997777778888999999987654321111 11223467898887321 1111 2345555443
Q ss_pred -CCCcEEEee
Q 039743 80 -NGVYVLGIC 88 (531)
Q Consensus 80 -~~iPvLGIC 88 (531)
..+|++-+.
T Consensus 76 ~~~~pii~~t 85 (136)
T 3t6k_A 76 TKTLPILMLT 85 (136)
T ss_dssp GTTCCEEEEE
T ss_pred cCCccEEEEe
Confidence 368988765
No 295
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=24.39 E-value=1.1e+02 Score=29.80 Aligned_cols=72 Identities=4% Similarity=-0.082 Sum_probs=39.8
Q ss_pred CEEEEEeC-------CCCcHHHHHHHHHHC--CCEEEEEeCCCChh--------ccccCCCCEEEEcCCCCCCCCCCCCC
Q 039743 6 ELVLILDY-------GSQYTHLITRRIRSL--SILSLCLSGTCSLD--------DITAKNPRVVILSGGPHSVHSPDAPA 68 (531)
Q Consensus 6 ~~I~IlD~-------G~~~~~~i~r~l~~~--G~~~~v~~~~~~~~--------~~~~~~~dgiIlsGGp~s~~~~~~~~ 68 (531)
..|+++=. ...|...+.+.+++. |..+.+...+.+.. .+...++||||+.+... .
T Consensus 69 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~----~---- 140 (366)
T 3h5t_A 69 GAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAK----G---- 140 (366)
T ss_dssp CEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCT----T----
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCC----C----
Confidence 45777732 233444444444432 88888777653221 12256899999985421 1
Q ss_pred ChHHHHHHHHhCCCcEEEe
Q 039743 69 FPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 69 ~~~~l~~~~~~~~iPvLGI 87 (531)
...++.+.+.++|+.-+
T Consensus 141 --~~~~~~l~~~~iPvV~i 157 (366)
T 3h5t_A 141 --DPHIDAIRARGLPAVIA 157 (366)
T ss_dssp --CHHHHHHHHHTCCEEEE
T ss_pred --hHHHHHHHHCCCCEEEE
Confidence 12344555569998754
No 296
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=24.28 E-value=1.3e+02 Score=29.21 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=35.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHH-H---hCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 224 EDHVICALSGGVDSTVAATLVHK-A---IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k-~---~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
..|++|..||. +|-+ .+|+.+ . ++.++.+|..|+.- +.+ +|+++|||+..++.
T Consensus 105 ~~ri~vl~Sg~-g~nl-~~ll~~~~~g~l~~~I~~Visn~~~--------~~~-~A~~~gIp~~~~~~ 161 (302)
T 3o1l_A 105 KKRVVLMASRE-SHCL-ADLLHRWHSDELDCDIACVISNHQD--------LRS-MVEWHDIPYYHVPV 161 (302)
T ss_dssp CCEEEEEECSC-CHHH-HHHHHHHHTTCSCSEEEEEEESSST--------THH-HHHTTTCCEEECCC
T ss_pred CcEEEEEEeCC-chhH-HHHHHHHHCCCCCcEEEEEEECcHH--------HHH-HHHHcCCCEEEcCC
Confidence 45899999998 6654 444433 2 23578888877642 223 68899999988754
No 297
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=24.26 E-value=1.4e+02 Score=26.14 Aligned_cols=33 Identities=15% Similarity=-0.039 Sum_probs=20.8
Q ss_pred CCEEEEEeCCC----CcHHHHHH----HHHHCC--CEEEEEeC
Q 039743 5 PELVLILDYGS----QYTHLITR----RIRSLS--ILSLCLSG 37 (531)
Q Consensus 5 ~~~I~IlD~G~----~~~~~i~r----~l~~~G--~~~~v~~~ 37 (531)
|++|+||.... +++..+++ .+++.| .+++++..
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 45799996542 45555554 455555 78888764
No 298
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=24.20 E-value=2.1e+02 Score=27.11 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=43.1
Q ss_pred CEEEEEeC-CCCcHHH----HHHHHHHC-CCEEEEEeCCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLILDY-GSQYTHL----ITRRIRSL-SILSLCLSGTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~----i~r~l~~~-G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
.+|+++-. ...|... +.+.+++. |+.+.+.....+.+. +...++||||+.+... . . ...
T Consensus 7 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~----~---~-~~~ 78 (325)
T 2x7x_A 7 FRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEA----A---P-MTP 78 (325)
T ss_dssp CEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSH----H---H-HHH
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH----H---H-HHH
Confidence 46777732 3333333 44556667 888888765544321 2246899999975421 0 0 123
Q ss_pred HHHHHHhCCCcEEEe
Q 039743 73 FLEWALSNGVYVLGI 87 (531)
Q Consensus 73 l~~~~~~~~iPvLGI 87 (531)
.++.+.+.++|+.-+
T Consensus 79 ~~~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 79 IVEEAYQKGIPVILV 93 (325)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCeEEEe
Confidence 456666679999765
No 299
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=24.16 E-value=72 Score=27.67 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=18.8
Q ss_pred CEEEEEeCC---CCcHHHHHHHHHHCCCEEEEE
Q 039743 6 ELVLILDYG---SQYTHLITRRIRSLSILSLCL 35 (531)
Q Consensus 6 ~~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~ 35 (531)
++|+||... .+++..+++.+.+ |..++.+
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~ 35 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHI 35 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEE
Confidence 479999643 1678888988875 4444433
No 300
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=23.86 E-value=3.1e+02 Score=26.22 Aligned_cols=31 Identities=3% Similarity=-0.025 Sum_probs=23.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEE
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLC 34 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v 34 (531)
+|.+|+||-.|+......++.+++.++...-
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVA 32 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEEE
Confidence 3568999999766677788999988876553
No 301
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.74 E-value=60 Score=25.76 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=45.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHh----
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALS---- 79 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~---- 79 (531)
.+|+|+|-.......+.+.++..|+.+........ .+.+....+|.+++-=. .|.. ..++++...+
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--------~p~~~g~~~~~~l~~~~~~ 74 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--------MPVMDGFTVLKKLQEKEEW 74 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--------CSSSCHHHHHHHHHTSTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--------CCCCcHHHHHHHHHhcccc
Confidence 47999997777777888999999987764321111 12233457898887321 1111 2355665544
Q ss_pred CCCcEEEee
Q 039743 80 NGVYVLGIC 88 (531)
Q Consensus 80 ~~iPvLGIC 88 (531)
.++|++-+.
T Consensus 75 ~~~pii~~s 83 (122)
T 3gl9_A 75 KRIPVIVLT 83 (122)
T ss_dssp TTSCEEEEE
T ss_pred cCCCEEEEe
Confidence 358988776
No 302
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.44 E-value=47 Score=25.51 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=45.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh----C
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS----N 80 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~----~ 80 (531)
.+|+|+|-.......+.+.++..|..+........ .+.+....+|.+|+--... +. -..++++...+ .
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~---~~----~~~~~~~~l~~~~~~~ 74 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP---DQ----SCLLLLQHLREHQADP 74 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT---CC----THHHHHHHHHHTCCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC---CC----CHHHHHHHHHhccccC
Confidence 46999998777788899999999987765331111 1112244689888853321 11 12345555444 3
Q ss_pred CCcEEEee
Q 039743 81 GVYVLGIC 88 (531)
Q Consensus 81 ~iPvLGIC 88 (531)
++|++-+.
T Consensus 75 ~~~ii~~~ 82 (119)
T 2j48_A 75 HPPLVLFL 82 (119)
T ss_dssp SCCCEEEE
T ss_pred CCCEEEEe
Confidence 57877654
No 303
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=23.39 E-value=1.2e+02 Score=28.10 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=39.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHC-CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSL-SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~-G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
.+|+|+|--......+.+.|++. |..+...........+....||.+++= ..-++... .++++...+.++||
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~dlvllD-----~~mP~~~G--~~~~~~lr~~~~pv 77 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLEGARHCQGDEYVVALVD-----LTLPDAPS--GEAVKVLLERGLPV 77 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEESSTGGGTTCCTTTEEEEEEE-----SCBTTBTT--SHHHHHHHHTTCCE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeChHHHHHHhhcCCCcEEEEe-----CCCCCCCH--HHHHHHHHhCCCCE
Confidence 57999986655566677788654 665543322112222223457777651 00011111 24555555567888
Q ss_pred EEe
Q 039743 85 LGI 87 (531)
Q Consensus 85 LGI 87 (531)
+-+
T Consensus 78 i~l 80 (259)
T 3luf_A 78 VIL 80 (259)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 304
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=23.31 E-value=46 Score=25.97 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=43.1
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH-hCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL-SNGV 82 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~-~~~i 82 (531)
|.+|+|+|-.......+.+.++..|..+........ .+.+....+|.+++--.-. +.. ..++++... ...+
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~-----~~~--g~~~~~~l~~~~~~ 73 (120)
T 2a9o_A 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLP-----EID--GLEVAKTIRKTSSV 73 (120)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCS-----SSC--HHHHHHHHHHHCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCC-----CCC--HHHHHHHHHhCCCC
Confidence 357999997777777888899988987654321111 1112244688887732211 111 123333332 2578
Q ss_pred cEEEee
Q 039743 83 YVLGIC 88 (531)
Q Consensus 83 PvLGIC 88 (531)
|++-+.
T Consensus 74 ~ii~~s 79 (120)
T 2a9o_A 74 PILMLS 79 (120)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 888775
No 305
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=23.10 E-value=47 Score=27.95 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=44.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC--ChhccccCCCCEEEEcCCCCCCCCCCCCCCh-HHHHHHHHh----
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC--SLDDITAKNPRVVILSGGPHSVHSPDAPAFP-AGFLEWALS---- 79 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~--~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~-~~l~~~~~~---- 79 (531)
||+|+|--......+.+.|+..|+.++....+. ..+.+....||.|++= -.-|..+ .++++..++
T Consensus 14 rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD--------~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 14 KILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTD--------WNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEE--------SCCSSSCHHHHHHHHHHSTTT
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEc--------CCCCCCCHHHHHHHHHhCCCC
Confidence 699999776677788899999998643322221 1122235578988872 1123332 355555543
Q ss_pred CCCcEEEee
Q 039743 80 NGVYVLGIC 88 (531)
Q Consensus 80 ~~iPvLGIC 88 (531)
.++||+-+-
T Consensus 86 ~~ipvI~lT 94 (134)
T 3to5_A 86 KHLPVLMIT 94 (134)
T ss_dssp TTCCEEEEE
T ss_pred CCCeEEEEE
Confidence 468988764
No 306
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=23.01 E-value=89 Score=29.28 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=21.9
Q ss_pred CCCCEEEEEeCCC----CcHHHHH----HHHHHCCCEEEEEeC
Q 039743 3 NKPELVLILDYGS----QYTHLIT----RRIRSLSILSLCLSG 37 (531)
Q Consensus 3 ~~~~~I~IlD~G~----~~~~~i~----r~l~~~G~~~~v~~~ 37 (531)
..+++|++|. || +++..++ +.+++.|++++++..
T Consensus 32 ~~~mkIliI~-GS~r~~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 32 THRPRILILY-GSLRTVSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp CSCCEEEEEE-CCCCSSCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCCeEEEEE-ccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 3456899995 44 4555544 445567998888654
No 307
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=22.88 E-value=55 Score=28.29 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=19.2
Q ss_pred CCEEEEEeC-CCCcHHHHHHHHHH-CCCEE
Q 039743 5 PELVLILDY-GSQYTHLITRRIRS-LSILS 32 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l~~-~G~~~ 32 (531)
|++|+|+=| .++++..+|+.+.+ +|.+.
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~~ 33 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADL 33 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCCe
Confidence 567888855 34568888888865 46654
No 308
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=22.84 E-value=76 Score=29.44 Aligned_cols=71 Identities=10% Similarity=-0.027 Sum_probs=41.9
Q ss_pred EEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhcc-----ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 8 VLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDDI-----TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 8 I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~-----~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
|+|+.- .+.....++++++++|+++.++..+.....+ ...++|.++++.-.. + ....+.+.+...+
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~------~~~~~~~~l~~~g 73 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQ--S------RGLAAARYLTALG 73 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSH--H------HHHHHHHHHHHTT
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccc--h------hhHHHHHHHHHCC
Confidence 788854 3445677999999999999887654322111 124678666653211 0 1223444455568
Q ss_pred CcEEE
Q 039743 82 VYVLG 86 (531)
Q Consensus 82 iPvLG 86 (531)
+|+++
T Consensus 74 ~~~~~ 78 (280)
T 1uc8_A 74 IPVVN 78 (280)
T ss_dssp CCEES
T ss_pred CceeC
Confidence 88875
No 309
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=22.49 E-value=72 Score=25.13 Aligned_cols=75 Identities=9% Similarity=0.144 Sum_probs=44.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCCh-HHHHHHHHh-CCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFP-AGFLEWALS-NGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~-~~l~~~~~~-~~i 82 (531)
.+|+|+|-.......+.+.++..|..+........ .+.+....||.+++-=. .|... .++++...+ .+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--------~p~~~g~~~~~~lr~~~~~ 74 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--------LPNKDGVEVCREVRKKYDM 74 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--------STTTHHHHHHHHHHTTCCS
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--------CCCCCHHHHHHHHHhcCCC
Confidence 47999997766777888999999987664321111 11122457898887321 11111 244544433 367
Q ss_pred cEEEee
Q 039743 83 YVLGIC 88 (531)
Q Consensus 83 PvLGIC 88 (531)
|++-+.
T Consensus 75 ~ii~~t 80 (120)
T 3f6p_A 75 PIIMLT 80 (120)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 887665
No 310
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=22.43 E-value=3.3e+02 Score=22.79 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=25.2
Q ss_pred ccceeeccCCCCCHHHHHHHHHHH--hCCcEEEE--EE
Q 039743 224 EDHVICALSGGVDSTVAATLVHKA--IGDRLHCV--FV 257 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~--~g~~v~~v--~i 257 (531)
.++|+|++.|.-.|.-++..+.+. .+.+++.+ |+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~~~a~l~ll~a~v 54 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYL 54 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 578999999988887666554332 47788888 65
No 311
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=22.28 E-value=1.7e+02 Score=27.19 Aligned_cols=75 Identities=9% Similarity=0.102 Sum_probs=43.5
Q ss_pred CEEEEE--eCCCCcHHH----HHHHHHHCCCEEEEEe-CCCChhc-------cccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYTHL----ITRRIRSLSILSLCLS-GTCSLDD-------ITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~~----i~r~l~~~G~~~~v~~-~~~~~~~-------~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+++ +.+..|... +.+++++.|+.+.++. ...+.+. +...++||||+.+... . ...
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~----~~~ 76 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDA----N----VLE 76 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCH----H----HHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCh----H----HHH
Confidence 457777 455555333 4566778898876543 3223221 2246799999976411 0 012
Q ss_pred HHHHHHHhCCCcEEEee
Q 039743 72 GFLEWALSNGVYVLGIC 88 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC 88 (531)
..++.+.+.++|+.-+.
T Consensus 77 ~~~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 77 PVFKKARDAGIVVLTNE 93 (303)
T ss_dssp HHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHCCCeEEEEe
Confidence 34566667799997653
No 312
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=21.99 E-value=72 Score=26.41 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=45.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~i 82 (531)
.+|+|+|-.......+.+.|+..|+.+........ .+.+....+|.+|+--.... .+ ..++++...+ .++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~---~~----g~~~~~~l~~~~~~~ 76 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPG---MD----GLALFRKILALDPDL 76 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSS---SC----HHHHHHHHHHHCTTS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCC---CC----HHHHHHHHHhhCCCC
Confidence 57999998777788889999999987664321111 11222456898888533211 11 1244444333 368
Q ss_pred cEEEee
Q 039743 83 YVLGIC 88 (531)
Q Consensus 83 PvLGIC 88 (531)
|++-+.
T Consensus 77 pii~ls 82 (155)
T 1qkk_A 77 PMILVT 82 (155)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 888775
No 313
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.82 E-value=68 Score=26.19 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=45.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCC-CEEEEEeCCC-Chhcccc--CCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHh-
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLS-ILSLCLSGTC-SLDDITA--KNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALS- 79 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G-~~~~v~~~~~-~~~~~~~--~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~- 79 (531)
.+|+|+|-.......+.+.|+..| +.+....... ....+.. ..+|.||+--.- +.. ..++++...+
T Consensus 21 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l--------~~~~g~~~~~~l~~~ 92 (146)
T 4dad_A 21 INILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA--------LDTAELAAIEKLSRL 92 (146)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT--------CCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC--------CCccHHHHHHHHHHh
Confidence 579999987777888899999988 7666543221 1122222 678988883221 111 1244444433
Q ss_pred -CCCcEEEee
Q 039743 80 -NGVYVLGIC 88 (531)
Q Consensus 80 -~~iPvLGIC 88 (531)
..+||+-+.
T Consensus 93 ~~~~~ii~lt 102 (146)
T 4dad_A 93 HPGLTCLLVT 102 (146)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCcEEEEe
Confidence 367887765
No 314
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.81 E-value=71 Score=25.83 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=45.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hcccc-----CCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDITA-----KNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~~-----~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
+.+|+|+|-.......+.+.++..|....+....... +.+.. ..+|.||+-=.-. +. -..++++.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~---~~----~g~~~~~~ 81 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMP---GI----NGWELIDL 81 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCS---SS----CHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCC---CC----CHHHHHHH
Confidence 3579999977667778889999999843443333221 11223 6789888842211 00 12345554
Q ss_pred HHh------CCCcEEEeeH
Q 039743 77 ALS------NGVYVLGICY 89 (531)
Q Consensus 77 ~~~------~~iPvLGIC~ 89 (531)
..+ ...|++-+.-
T Consensus 82 l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 82 FKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp HHHHCGGGTTTCEEEEECS
T ss_pred HHHhhhhccCCCeEEEEeC
Confidence 444 4678877653
No 315
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=21.80 E-value=3.3e+02 Score=22.31 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=26.4
Q ss_pred ccceeeccC--CCCCHHHHHHHHH---HHhCCcEEEEEEeC
Q 039743 224 EDHVICALS--GGVDSTVAATLVH---KAIGDRLHCVFVDN 259 (531)
Q Consensus 224 ~~kvvvalS--GGvDS~v~a~l~~---k~~g~~v~~v~id~ 259 (531)
.++|+|++. |.-.|.-++..+. +..+.+++.+|+-.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 55 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLE 55 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEe
Confidence 578999999 9888877665543 33578999999854
No 316
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.54 E-value=1.4e+02 Score=27.59 Aligned_cols=72 Identities=6% Similarity=-0.010 Sum_probs=40.5
Q ss_pred CEEEEE---eCCCCcHHH----HHHHHHHCCCEEEEEeCCCC-------hhccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL---DYGSQYTHL----ITRRIRSLSILSLCLSGTCS-------LDDITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il---D~G~~~~~~----i~r~l~~~G~~~~v~~~~~~-------~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+|+ |+...|... +.+.+++.|..+.+...+.+ .+.+...++||||+.+... . ..
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~----~~ 82 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISN-----Y----DL 82 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCH-----H----HH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCc-----c----cH
Confidence 457766 345555433 45677778988776543211 1122255799999976421 0 12
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
.+.+ ..+.++|+.-+
T Consensus 83 ~~~~-~~~~~iPvV~~ 97 (289)
T 3g85_A 83 EYLN-KASLTLPIILF 97 (289)
T ss_dssp HHHH-HCCCSSCEEEE
T ss_pred HHHH-hccCCCCEEEE
Confidence 3333 33568999755
No 317
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.50 E-value=2.3e+02 Score=27.21 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=41.3
Q ss_pred CEEEEE--eCCCCcH----HHHHHHHHHCCCEEEEEeCCCC-hh-------ccccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 6 ELVLIL--DYGSQYT----HLITRRIRSLSILSLCLSGTCS-LD-------DITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 6 ~~I~Il--D~G~~~~----~~i~r~l~~~G~~~~v~~~~~~-~~-------~~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
.+|+++ |....|. ..+.+.+++.|+.+.+...+.+ .+ .+...++||||+.+... . ..
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~----~-----~~ 132 (349)
T 1jye_A 62 LLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLD----D-----QD 132 (349)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC----H-----HH
T ss_pred CEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecCCC----C-----hh
Confidence 457776 4444443 3355677789998888765432 21 12246799999975211 1 11
Q ss_pred HHHHHHHhCCCcEEEe
Q 039743 72 GFLEWALSNGVYVLGI 87 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGI 87 (531)
.+...+...++|+.-+
T Consensus 133 ~~~~~~~~~~iPvV~i 148 (349)
T 1jye_A 133 AIAVEAACTNVPALFL 148 (349)
T ss_dssp HHHHHHHTTTSCEEES
T ss_pred HHHHHHhhCCCCEEEE
Confidence 2233334568998654
No 318
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.21 E-value=70 Score=27.68 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=33.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVIL 54 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIl 54 (531)
+.+|+|+|--......+.+.|+..|+.+........ .+.+....||.||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 57 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITV 57 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEE
Confidence 458999997777778888999999987644321111 12233456888887
No 319
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=21.20 E-value=27 Score=31.62 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=42.2
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHH---CCCEEE-EEeCC-CC--------------hhccc--cCCCCEEEEcCCCCC
Q 039743 6 ELVLILDYGS----QYTHLITRRIRS---LSILSL-CLSGT-CS--------------LDDIT--AKNPRVVILSGGPHS 60 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~---~G~~~~-v~~~~-~~--------------~~~~~--~~~~dgiIlsGGp~s 60 (531)
+||++|. || +++..+++++.+ .|++++ ++... .+ ..++. ....|+||+. .|.
T Consensus 7 mkIl~I~-GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~-tP~- 83 (199)
T 4hs4_A 7 LHFVTLL-GSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIV-TPE- 83 (199)
T ss_dssp EEEEEEE-CCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEE-ECC-
T ss_pred CEEEEEE-cCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEE-cCc-
Confidence 4799985 44 556777776654 366666 43221 00 00111 3457999984 333
Q ss_pred CCCCCCCCChHHHHHHHHh------CCCcEEEee
Q 039743 61 VHSPDAPAFPAGFLEWALS------NGVYVLGIC 88 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~------~~iPvLGIC 88 (531)
|....|...+.+++++.. .++|++-++
T Consensus 84 -Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ 116 (199)
T 4hs4_A 84 -YNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVT 116 (199)
T ss_dssp -BTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEE
T ss_pred -cCCCcCHHHHHHHHHhcccCCcccCCCEEEEEE
Confidence 444444445667776543 355654443
No 320
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=21.09 E-value=80 Score=34.30 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=46.2
Q ss_pred HHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCCCCCCCCCCChH---HHHHHHHhCCCcEEEee
Q 039743 21 ITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHSVHSPDAPAFPA---GFLEWALSNGVYVLGIC 88 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s~~~~~~~~~~~---~l~~~~~~~~iPvLGIC 88 (531)
+..+|..+++.++.++.+.-.+ +. +.++|.||..|-..+.......|..+ ++++....+|-=++||.
T Consensus 473 ilEALsg~~~dV~FIsfdDI~e~e~-L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVG 543 (759)
T 2zuv_A 473 ILESLSGMRVNVRFISFDDVLAHGI-DSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVG 543 (759)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHHCC-CTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhcCCCceEEecHHHhccccc-cccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeC
Confidence 7899999999999998765433 32 57899999888666555544444443 45556666676666664
No 321
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.94 E-value=51 Score=26.87 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=43.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CCCc
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NGVY 83 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~iP 83 (531)
+|+|+|-.......+.+.|+..|..+........ .+.+....+|.+|+-=.- ++. -..++++...+ ..+|
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l-----~~~--~g~~l~~~l~~~~~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKL-----PDM--SGEDVLDWINQNDIPTS 78 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBC-----SSS--BHHHHHHHHHHTTCCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCC-----CCC--CHHHHHHHHHhcCCCCC
Confidence 7999998888888888889888887643321111 111224468988873211 010 11345555444 3578
Q ss_pred EEEee
Q 039743 84 VLGIC 88 (531)
Q Consensus 84 vLGIC 88 (531)
++-+.
T Consensus 79 ii~ls 83 (137)
T 3cfy_A 79 VIIAT 83 (137)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87664
No 322
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=20.89 E-value=1e+02 Score=30.20 Aligned_cols=33 Identities=3% Similarity=0.008 Sum_probs=26.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGT 38 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~ 38 (531)
|++|+|+. |++....+++..+++|+++.++..+
T Consensus 1 MK~I~ilG-gg~~g~~~~~~Ak~~G~~vv~vd~~ 33 (363)
T 4ffl_A 1 MKTICLVG-GKLQGFEAAYLSKKAGMKVVLVDKN 33 (363)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899996 5556667889999999999988543
No 323
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.72 E-value=93 Score=24.72 Aligned_cols=77 Identities=14% Similarity=0.034 Sum_probs=45.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CC-hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh--CC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CS-LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS--NG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~-~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~--~~ 81 (531)
.+|+|+|-.......+.+.|++.|..+.....+ .. .+.+....+|.+|+--.-. + .-..++++...+ .+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~-----~--~~g~~~~~~l~~~~~~ 74 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-----G--VNGIQVLETLRKRQYS 74 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCS-----S--SCHHHHHHHHHHTTCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCC-----C--CChHHHHHHHHhcCCC
Confidence 369999977777888999999999655422222 22 2223345789888843211 0 012345555444 35
Q ss_pred CcEEEeeH
Q 039743 82 VYVLGICY 89 (531)
Q Consensus 82 iPvLGIC~ 89 (531)
.|++-++-
T Consensus 75 ~~ii~~s~ 82 (134)
T 3f6c_A 75 GIIIIVSA 82 (134)
T ss_dssp SEEEEEEC
T ss_pred CeEEEEeC
Confidence 78876653
No 324
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=20.35 E-value=88 Score=31.76 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHCCCEEEEEeC-CCChhccc------cCCCCEEEEcCCCC
Q 039743 16 QYTHLITRRIRSLSILSLCLSG-TCSLDDIT------AKNPRVVILSGGPH 59 (531)
Q Consensus 16 ~~~~~i~r~l~~~G~~~~v~~~-~~~~~~~~------~~~~dgiIlsGGp~ 59 (531)
.+...++..|+++|+.+..+.. .++.+.+. ..+.|.||.+||-+
T Consensus 207 sN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 257 (402)
T 1uz5_A 207 INGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS 257 (402)
T ss_dssp CHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred chHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 3467789999999997764332 22333321 23589999999976
No 325
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=20.32 E-value=1.2e+02 Score=29.48 Aligned_cols=77 Identities=9% Similarity=-0.068 Sum_probs=45.4
Q ss_pred CCEEEEE-eC--CCC-cHHHHHHHHHHCCCEEEEEeCCCC--hhc----cccCCCCEEEEcCCCCCCCCCCCCCChHHHH
Q 039743 5 PELVLIL-DY--GSQ-YTHLITRRIRSLSILSLCLSGTCS--LDD----ITAKNPRVVILSGGPHSVHSPDAPAFPAGFL 74 (531)
Q Consensus 5 ~~~I~Il-D~--G~~-~~~~i~r~l~~~G~~~~v~~~~~~--~~~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~ 74 (531)
|++++|+ .. |.. ....+.+.+++.|..+.+...... ..+ ....++|.||..||-+++ .+++
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl---------~~v~ 99 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTI---------NEVS 99 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHH---------HHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHH---------HHHH
Confidence 3456666 33 222 234577888899998887754322 111 113468999999996642 3455
Q ss_pred HHHH----hCCCcEEEeeHH
Q 039743 75 EWAL----SNGVYVLGICYG 90 (531)
Q Consensus 75 ~~~~----~~~iPvLGIC~G 90 (531)
+.+. ..++|+.+|=.|
T Consensus 100 ~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 100 TALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHCCSSCCCEEEEEECS
T ss_pred HHHhhcccCCCCeEEEecCc
Confidence 5555 457886666344
No 326
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=20.26 E-value=1.7e+02 Score=28.10 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=35.5
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
..|++|..||. +|-+-+.+-+-.-| .++.+|.-|+.- +.. +|+++|||+..++.
T Consensus 95 ~~ri~vl~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~~--------~~~-~A~~~gIp~~~~~~ 151 (292)
T 3lou_A 95 RPKVLIMVSKL-EHCLADLLFRWKMGELKMDIVGIVSNHPD--------FAP-LAAQHGLPFRHFPI 151 (292)
T ss_dssp CCEEEEEECSC-CHHHHHHHHHHHHTSSCCEEEEEEESSST--------THH-HHHHTTCCEEECCC
T ss_pred CCEEEEEEcCC-CcCHHHHHHHHHcCCCCcEEEEEEeCcHH--------HHH-HHHHcCCCEEEeCC
Confidence 45899999998 66544433322224 578888877642 123 68889999988765
No 327
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.25 E-value=1.1e+02 Score=27.05 Aligned_cols=71 Identities=10% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCEEEEEeCC---CCcHHHHHHHHHH---CCCEEEEEeCCC-Ch-------------hccc--cCCCCEEEEcCCCCCCC
Q 039743 5 PELVLILDYG---SQYTHLITRRIRS---LSILSLCLSGTC-SL-------------DDIT--AKNPRVVILSGGPHSVH 62 (531)
Q Consensus 5 ~~~I~IlD~G---~~~~~~i~r~l~~---~G~~~~v~~~~~-~~-------------~~~~--~~~~dgiIlsGGp~s~~ 62 (531)
|+||+||... .+++..+++++.+ .|.+++++.... +. .++. ....|+||+. .|. |
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~-sP~--y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIF-SPV--Y 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEE-CCC--B
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEE-Ccc--c
Confidence 5689999643 2456666665543 477777764321 10 0111 3457888884 343 4
Q ss_pred CCCCCCChHHHHHHHH
Q 039743 63 SPDAPAFPAGFLEWAL 78 (531)
Q Consensus 63 ~~~~~~~~~~l~~~~~ 78 (531)
.-..|...+.++++..
T Consensus 79 ~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 79 NYAIPGPVKNLLDWLS 94 (192)
T ss_dssp TTBCCHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhh
Confidence 4444444556666643
No 328
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=20.19 E-value=1.1e+02 Score=29.32 Aligned_cols=79 Identities=18% Similarity=0.034 Sum_probs=46.1
Q ss_pred CCCCEEEEE-eC--CCCc----HHHHHHHHHHCCCEEEEEeCCCC--hhccc---cCCCCEEEEcCCCCCCCCCCCCCCh
Q 039743 3 NKPELVLIL-DY--GSQY----THLITRRIRSLSILSLCLSGTCS--LDDIT---AKNPRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 3 ~~~~~I~Il-D~--G~~~----~~~i~r~l~~~G~~~~v~~~~~~--~~~~~---~~~~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
.+|++++|| +- |.+. ...+.+.|++.|..+++...... ..++. ..++|.||..||-+++
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl--------- 76 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTV--------- 76 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHH---------
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHH---------
Confidence 445666666 43 3322 33566788888999888764432 11211 3478999999996642
Q ss_pred HHHHHHHHh--CCCcEEEeeHH
Q 039743 71 AGFLEWALS--NGVYVLGICYG 90 (531)
Q Consensus 71 ~~l~~~~~~--~~iPvLGIC~G 90 (531)
.++++.+.. .++|+..|=.|
T Consensus 77 ~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 77 FECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHhhCCCCCcEEEecCC
Confidence 244444443 45666555444
No 329
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.06 E-value=68 Score=30.94 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=33.2
Q ss_pred CEEEEE--eCCCCcHH----HHHHHHHHCCCEEEEEeCCCChhc-------cccCCCCEEEEcCC
Q 039743 6 ELVLIL--DYGSQYTH----LITRRIRSLSILSLCLSGTCSLDD-------ITAKNPRVVILSGG 57 (531)
Q Consensus 6 ~~I~Il--D~G~~~~~----~i~r~l~~~G~~~~v~~~~~~~~~-------~~~~~~dgiIlsGG 57 (531)
.+|+++ |....|.. .+.+.+++.|..+.+...+. .+. +...++||||+.+.
T Consensus 65 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 65 ALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 457777 44544533 35567777899998887654 221 22457999999875
Done!