BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039749
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 199/313 (63%), Gaps = 6/313 (1%)
Query: 11 IGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNEDLQ 70
IGV YG+LGNNLP +V++L KSN I ++R++ P Q LQ L++SN++V+L D+Q
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 71 QLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQ-YANFVYDPMQNVQNALKXXX 129
LA++ S A +W++ NV+AY PSV FRYI +GNE+IPG A ++ M+N+ NAL
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 130 XXXXXXXXXSY--AVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAYF 187
+ VLG+SYPPS +F + A +S IV FL N PLL NVYP F+Y
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 188 GEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEXXXXXXXXXXXSETGWP 247
G P I YAL + V DG SY N+FDA++DA++ ALE SE+GWP
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWP 240
Query: 248 SAGADL-ATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPAGTEQNFG 306
SAG A+T+NA+TY N+I+ V G GTP+RP +EAYIF +FNENQK G EQNFG
Sbjct: 241 SAGGGAEASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGGIEQNFG 298
Query: 307 LFYPDMTPVYPVN 319
LFYP+ PVY ++
Sbjct: 299 LFYPNKQPVYQIS 311
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 193/316 (61%), Gaps = 10/316 (3%)
Query: 11 IGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNEDLQ 70
+GV YG+ GNNLP +VIAL K + I ++RI+ P Q VL+ L+ SN+E++LG N DLQ
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 71 QLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIP-----GQYANFVYDPMQNVQNAL 125
L T+ S A +WV+ NV + SV+FRYI +GNE+ P A FV M+N+ +A+
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 126 KXXXXXXXXXXXXS--YAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPC 183
+ + ++G+SYPPS +F D + ++ I+ FL + PLLAN+YP
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 184 FAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEXXXXXXXXXXXSE 243
F Y G P I YAL + V+DG Y N+FDA +DA+Y ALE SE
Sbjct: 181 FTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSE 240
Query: 244 TGWPSAGADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPAGTEQ 303
+GWPSAGA AT +N +TY++N+IQ V +GTPKRP+ +E Y+FA+F+EN+K E+
Sbjct: 241 SGWPSAGAFAATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDENKKQPEVEK 298
Query: 304 NFGLFYPDMTPVYPVN 319
+FGLF+P+ Y +N
Sbjct: 299 HFGLFFPNKWQKYNLN 314
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 181/310 (58%), Gaps = 6/310 (1%)
Query: 11 IGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNEDLQ 70
IGV YG+ NNLP+A V+++ KSN I +R++ P Q LQ + + + VV+G N+ L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 71 QLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNAL-KXXX 129
LA + AA+WVK N+ AY P V FRY+ +GNEV G N V M+NV AL
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATRNLV-PAMKNVHGALVAAGL 118
Query: 130 XXXXXXXXXSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAYFGE 189
S A+LG PPS SF +++A M +V FL + PL+AN+YP A+
Sbjct: 119 GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYN 178
Query: 190 PTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEXXXXXXXXXXXSETGWPSA 249
P+ +D YAL N + + V DG Y N+FD +DA Y A+ SE+GWPS
Sbjct: 179 PSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSG 238
Query: 250 GADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPAGTEQNFGLFY 309
G AT NA+ Y ++I V G+GTP+ P +E YIFA+FNENQK +G EQN+GLFY
Sbjct: 239 GGTAATPANARFYNQHLINHV--GRGTPRHPGA-IETYIFAMFNENQKDSGVEQNWGLFY 295
Query: 310 PDMTPVYPVN 319
P+M VYP+N
Sbjct: 296 PNMQHVYPIN 305
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 182/319 (57%), Gaps = 12/319 (3%)
Query: 9 QVIGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNED 68
Q IGV YG + NNLPS VI L +N I K+RI+ P+ V LK SN+E++L N+D
Sbjct: 1 QPIGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQD 60
Query: 69 LQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQ----YANFVYDPMQNVQNA 124
L+ LA + S A WV+DN+ + P VKF+YI +GNEV PG+ YA FV M+N+ NA
Sbjct: 61 LEALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 125 LKXXXXXXXXXXXXSY--AVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYP 182
L S +L ++YPP ++ F ++ + ++ I+ FL ++ PLLAN+YP
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYP 179
Query: 183 CFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEXXXXXXXXXXXS 242
F + + YAL N Y N+FDA++D+MY A E S
Sbjct: 180 YFGHIDNTNAVPLSYALFNQQRR----NDTGYQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 243 ETGWPSAGADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPA-GT 301
E+GWPS G AT NA+TY N+I V G GTPK+P +E Y+FA+F+EN+K +
Sbjct: 236 ESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 302 EQNFGLFYPDMTPVYPVNI 320
E++FGLF PD P Y +N
Sbjct: 296 EKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 181/319 (56%), Gaps = 12/319 (3%)
Query: 9 QVIGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNED 68
Q IGV YG + NNLPS VI L +N I K+RI+ P+ V LK SN+E++L N+D
Sbjct: 1 QPIGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQD 60
Query: 69 LQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQ----YANFVYDPMQNVQNA 124
L+ LA + S A WV+DN+ + P VKF+YI +GNEV PG+ YA FV M+N+ NA
Sbjct: 61 LEALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 125 LKXXXXXXXXXXXXSY--AVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYP 182
L S +L ++YPP ++ F ++ + ++ I+ FL ++ PLLAN+YP
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYP 179
Query: 183 CFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEXXXXXXXXXXXS 242
F + + YAL N Y N+FDA++D+MY A E S
Sbjct: 180 YFGHIDNTNAVPLSYALFNQQRR----NDTGYQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 243 ETGWPSAGADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPA-GT 301
+GWPS G AT NA+TY N+I V G GTPK+P +E Y+FA+F+EN+K +
Sbjct: 236 ASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 302 EQNFGLFYPDMTPVYPVNI 320
E++FGLF PD P Y +N
Sbjct: 296 EKHFGLFNPDQRPKYQLNF 314
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 172/311 (55%), Gaps = 10/311 (3%)
Query: 11 IGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNEDLQ 70
IGV YG++GNNLPS V+ L +S IN +RI+ L L++S + ++L N+ L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 71 QLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKXXXX 130
+A S AA+WV++NV Y P+V +YI GNEV G + M+N+ AL
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEV-QGGATQSILPAMRNLNAALSAAGL 119
Query: 131 XX-XXXXXXSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAYFGE 189
+ + +S+PPS F +A M+ + L PLLANVYP FAY
Sbjct: 120 GAIKVSTSIRFDEVANSFPPSAGVF---KNAYMTDVARLLASTGAPLLANVYPYFAYRDN 176
Query: 190 PTTIDADYALGNPNASFV-YDGTLSYNNMFDAMIDAMYVALEXXXXXXXXXXXSETGWPS 248
P +I +YA P + + L+Y ++FDAM+DA+Y ALE SE+GWPS
Sbjct: 177 PGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPS 236
Query: 249 AGADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPA-GTEQNFGL 307
AG A+ NA+TY +I V G GTPK+ E LE YIFA+FNENQK TE++FGL
Sbjct: 237 AGGFAASAGNARTYNQGLINHV--GGGTPKKREA-LETYIFAMFNENQKTGDATERSFGL 293
Query: 308 FYPDMTPVYPV 318
F PD +P Y +
Sbjct: 294 FNPDKSPAYNI 304
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 295 NQKPAG--TEQNFGLFYPDMTPVYPVNI 320
N KP G TE+ F L Y D+ ++PV +
Sbjct: 133 NDKPVGIVTEREFLLLYKDLDEIFPVKV 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,046,085
Number of Sequences: 62578
Number of extensions: 355852
Number of successful extensions: 867
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 12
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)