Query 039749
Match_columns 321
No_of_seqs 173 out of 1117
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.9E-89 4.1E-94 650.5 22.5 307 11-320 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.5E-48 5.5E-53 352.0 23.5 247 7-312 42-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.2 4.5E-09 9.9E-14 101.0 20.0 239 25-319 26-330 (332)
4 PF03198 Glyco_hydro_72: Gluca 99.1 7.4E-10 1.6E-14 104.6 13.9 190 11-250 30-252 (314)
5 COG3867 Arabinogalactan endo-1 98.5 8.2E-06 1.8E-10 76.6 17.6 242 25-319 65-389 (403)
6 PRK10150 beta-D-glucuronidase; 98.5 6.7E-05 1.5E-09 77.9 25.7 235 29-318 319-585 (604)
7 PF00150 Cellulase: Cellulase 98.4 5.4E-05 1.2E-09 69.8 20.3 220 10-272 10-267 (281)
8 smart00633 Glyco_10 Glycosyl h 97.9 0.0017 3.7E-08 60.2 19.5 76 229-318 175-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.7 0.0021 4.5E-08 59.3 15.8 210 34-314 17-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 97.4 0.0076 1.6E-07 57.0 15.6 96 10-105 17-132 (298)
11 TIGR03356 BGL beta-galactosida 96.8 0.32 7E-06 48.7 21.8 43 26-68 57-118 (427)
12 PF00232 Glyco_hydro_1: Glycos 96.5 0.021 4.6E-07 57.5 10.9 278 25-317 60-442 (455)
13 PLN02998 beta-glucosidase 94.3 6.7 0.00015 40.2 19.7 47 25-71 84-149 (497)
14 PLN02814 beta-glucosidase 92.5 14 0.00031 37.9 21.3 47 25-71 79-144 (504)
15 cd02874 GH18_CFLE_spore_hydrol 89.8 4.2 9.1E-05 38.5 11.3 83 47-130 48-138 (313)
16 cd02875 GH18_chitobiase Chitob 89.0 12 0.00026 36.5 14.0 132 36-185 55-191 (358)
17 PF02449 Glyco_hydro_42: Beta- 87.3 2.5 5.3E-05 41.3 8.0 83 25-107 12-140 (374)
18 PRK09593 arb 6-phospho-beta-gl 85.9 43 0.00094 34.1 23.2 47 25-71 75-141 (478)
19 PF03662 Glyco_hydro_79n: Glyc 85.8 4.4 9.5E-05 39.1 8.6 172 49-251 114-300 (319)
20 PF01229 Glyco_hydro_39: Glyco 83.9 52 0.0011 33.4 19.3 246 27-315 44-350 (486)
21 PRK09525 lacZ beta-D-galactosi 77.3 26 0.00057 39.2 11.9 98 10-107 352-465 (1027)
22 PRK10340 ebgA cryptic beta-D-g 77.2 22 0.00047 39.8 11.2 99 10-108 336-453 (1021)
23 cd06545 GH18_3CO4_chitinase Th 73.9 36 0.00078 31.2 10.2 81 48-130 50-133 (253)
24 smart00481 POLIIIAc DNA polyme 73.5 12 0.00026 26.8 5.6 45 22-66 14-63 (67)
25 PF00925 GTP_cyclohydro2: GTP 73.2 3.5 7.6E-05 36.0 3.1 38 28-65 131-168 (169)
26 cd02872 GH18_chitolectin_chito 72.7 44 0.00095 32.2 11.0 115 51-185 62-192 (362)
27 cd02876 GH18_SI-CLP Stabilin-1 72.7 42 0.0009 31.9 10.7 125 48-185 55-191 (318)
28 cd00598 GH18_chitinase-like Th 69.4 17 0.00036 31.8 6.7 82 48-130 53-142 (210)
29 PRK13511 6-phospho-beta-galact 68.6 13 0.00027 37.8 6.4 47 25-71 56-121 (469)
30 COG3934 Endo-beta-mannanase [C 68.4 20 0.00044 36.6 7.5 181 80-318 123-312 (587)
31 PRK09936 hypothetical protein; 68.2 77 0.0017 30.3 11.1 128 9-136 20-180 (296)
32 COG4782 Uncharacterized protei 68.1 18 0.0004 35.5 7.0 39 231-272 142-186 (377)
33 PF02449 Glyco_hydro_42: Beta- 63.4 70 0.0015 31.1 10.4 56 110-183 207-262 (374)
34 cd02873 GH18_IDGF The IDGF's ( 62.6 1.1E+02 0.0023 30.5 11.6 59 110-186 167-225 (413)
35 PRK00393 ribA GTP cyclohydrola 62.5 12 0.00026 33.5 4.4 33 29-61 134-166 (197)
36 TIGR00505 ribA GTP cyclohydrol 62.4 12 0.00027 33.2 4.4 33 29-61 131-163 (191)
37 PLN02849 beta-glucosidase 61.9 11 0.00024 38.6 4.6 46 26-71 82-146 (503)
38 PRK13347 coproporphyrinogen II 61.9 16 0.00034 36.9 5.6 108 26-135 152-287 (453)
39 PRK09589 celA 6-phospho-beta-g 59.7 26 0.00056 35.7 6.7 47 25-71 69-135 (476)
40 PF02055 Glyco_hydro_30: O-Gly 57.5 1.4E+02 0.003 30.7 11.6 82 55-136 166-278 (496)
41 PF00704 Glyco_hydro_18: Glyco 56.5 63 0.0014 30.4 8.5 109 55-185 71-196 (343)
42 smart00636 Glyco_18 Glycosyl h 55.6 31 0.00067 32.8 6.2 121 50-185 57-188 (334)
43 PRK12485 bifunctional 3,4-dihy 54.8 15 0.00033 36.2 4.0 33 28-61 330-362 (369)
44 cd00641 GTP_cyclohydro2 GTP cy 52.5 22 0.00048 31.6 4.3 33 29-61 133-165 (193)
45 PF05990 DUF900: Alpha/beta hy 52.4 39 0.00084 30.8 6.1 39 231-272 44-88 (233)
46 PRK14019 bifunctional 3,4-dihy 52.1 18 0.00039 35.7 4.0 33 29-62 328-360 (367)
47 PF12876 Cellulase-like: Sugar 50.8 44 0.00095 25.5 5.3 48 90-137 5-63 (88)
48 PF04909 Amidohydro_2: Amidohy 50.5 49 0.0011 29.6 6.4 117 78-247 56-175 (273)
49 PF06180 CbiK: Cobalt chelatas 50.0 2.1E+02 0.0045 26.9 10.6 141 20-187 55-209 (262)
50 PRK15014 6-phospho-beta-glucos 48.7 39 0.00084 34.5 5.9 46 25-70 71-136 (477)
51 PRK09852 cryptic 6-phospho-bet 45.3 58 0.0013 33.2 6.6 46 26-71 74-139 (474)
52 KOG0626 Beta-glucosidase, lact 45.1 46 0.001 34.3 5.8 79 232-317 403-498 (524)
53 cd06549 GH18_trifunctional GH1 44.4 2.8E+02 0.006 26.1 10.8 94 70-185 80-173 (298)
54 PRK08815 GTP cyclohydrolase; P 44.3 32 0.00069 34.0 4.4 37 29-65 305-341 (375)
55 PRK09318 bifunctional 3,4-dihy 44.3 32 0.0007 34.2 4.4 37 29-65 320-356 (387)
56 TIGR03632 bact_S11 30S ribosom 44.2 54 0.0012 26.4 5.0 37 26-62 50-91 (108)
57 TIGR01233 lacG 6-phospho-beta- 44.0 32 0.00068 35.0 4.4 47 25-71 55-120 (467)
58 PRK09314 bifunctional 3,4-dihy 42.5 34 0.00073 33.4 4.2 34 28-61 300-334 (339)
59 COG1433 Uncharacterized conser 42.4 55 0.0012 27.1 4.9 40 26-65 55-94 (121)
60 KOG0078 GTP-binding protein SE 42.3 69 0.0015 29.1 5.8 62 39-106 62-128 (207)
61 PF00331 Glyco_hydro_10: Glyco 41.7 36 0.00078 32.6 4.3 214 48-317 63-312 (320)
62 PRK09311 bifunctional 3,4-dihy 41.7 36 0.00079 33.9 4.4 38 28-65 338-375 (402)
63 PRK09319 bifunctional 3,4-dihy 40.8 38 0.00083 35.2 4.4 38 28-65 342-379 (555)
64 TIGR01579 MiaB-like-C MiaB-lik 40.1 3.8E+02 0.0081 26.4 13.8 60 110-186 271-330 (414)
65 PLN02831 Bifunctional GTP cycl 40.1 39 0.00084 34.3 4.3 38 28-65 372-409 (450)
66 cd01543 PBP1_XylR Ligand-bindi 39.9 2.6E+02 0.0056 24.8 9.5 115 25-157 97-226 (265)
67 PF14871 GHL6: Hypothetical gl 39.7 70 0.0015 26.7 5.2 43 24-66 1-66 (132)
68 PF13377 Peripla_BP_3: Peripla 35.7 2.4E+02 0.0051 22.8 8.0 108 30-158 2-123 (160)
69 COG2159 Predicted metal-depend 35.6 1.9E+02 0.0041 27.4 8.1 95 115-251 112-209 (293)
70 PHA02754 hypothetical protein; 35.4 39 0.00085 24.4 2.5 25 113-137 15-42 (67)
71 TIGR03581 EF_0839 conserved hy 35.4 96 0.0021 28.5 5.6 53 8-60 116-180 (236)
72 TIGR03628 arch_S11P archaeal r 35.2 84 0.0018 25.8 4.8 36 26-61 53-101 (114)
73 COG3858 Predicted glycosyl hyd 35.0 1.1E+02 0.0025 30.6 6.6 86 46-132 149-244 (423)
74 cd02879 GH18_plant_chitinase_c 34.9 3.2E+02 0.0069 25.7 9.5 159 47-242 54-235 (299)
75 PF00411 Ribosomal_S11: Riboso 34.8 77 0.0017 25.6 4.6 36 27-62 51-91 (110)
76 cd04743 NPD_PKS 2-Nitropropane 34.4 3.5E+02 0.0075 26.2 9.7 58 8-66 55-112 (320)
77 COG1058 CinA Predicted nucleot 33.2 1.3E+02 0.0028 28.2 6.3 60 95-178 3-66 (255)
78 PRK07198 hypothetical protein; 32.7 38 0.00082 33.8 2.8 37 29-65 338-375 (418)
79 cd06418 GH25_BacA-like BacA is 32.6 3.7E+02 0.0081 24.2 11.6 106 23-130 21-142 (212)
80 CHL00041 rps11 ribosomal prote 32.5 1.1E+02 0.0023 25.1 5.1 35 27-61 64-103 (116)
81 PRK07379 coproporphyrinogen II 31.3 83 0.0018 31.1 5.1 107 27-135 116-251 (400)
82 PRK09607 rps11p 30S ribosomal 31.1 1.1E+02 0.0023 25.8 4.9 36 26-61 60-108 (132)
83 PF14488 DUF4434: Domain of un 31.0 3.1E+02 0.0067 23.7 8.0 78 48-128 69-151 (166)
84 COG0621 MiaB 2-methylthioadeni 30.9 5.8E+02 0.013 25.9 12.9 127 10-185 195-336 (437)
85 PF02811 PHP: PHP domain; Int 30.5 1.1E+02 0.0025 25.3 5.2 46 21-66 14-64 (175)
86 COG0807 RibA GTP cyclohydrolas 30.5 94 0.002 27.9 4.8 39 29-67 133-171 (193)
87 PF00150 Cellulase: Cellulase 30.5 2.1E+02 0.0046 25.6 7.4 66 223-298 65-134 (281)
88 PF01055 Glyco_hydro_31: Glyco 30.0 4E+02 0.0087 26.3 9.8 133 110-293 41-180 (441)
89 PF06117 DUF957: Enterobacteri 30.0 1.2E+02 0.0027 22.2 4.4 40 76-127 10-54 (65)
90 PRK05309 30S ribosomal protein 29.9 1.2E+02 0.0027 25.2 5.1 36 26-61 67-107 (128)
91 KOG2018 Predicted dinucleotide 29.6 47 0.001 32.3 2.8 33 26-58 87-119 (430)
92 PF13547 GTA_TIM: GTA TIM-barr 29.5 81 0.0018 30.1 4.3 81 94-186 18-112 (299)
93 cd03412 CbiK_N Anaerobic cobal 29.1 2.1E+02 0.0046 23.4 6.4 48 19-66 52-109 (127)
94 COG5016 Pyruvate/oxaloacetate 29.1 97 0.0021 31.2 4.9 41 25-65 96-146 (472)
95 PRK09997 hydroxypyruvate isome 28.6 4.4E+02 0.0096 23.8 9.6 50 12-62 5-58 (258)
96 cd06548 GH18_chitinase The GH1 28.4 2E+02 0.0043 27.4 7.0 154 50-242 75-258 (322)
97 COG2896 MoaA Molybdenum cofact 28.3 5.6E+02 0.012 24.9 11.8 130 21-186 41-188 (322)
98 TIGR00640 acid_CoA_mut_C methy 28.2 1.9E+02 0.0042 23.9 6.1 40 24-63 41-90 (132)
99 TIGR01162 purE phosphoribosyla 27.9 1.2E+02 0.0025 26.4 4.7 47 20-66 9-62 (156)
100 PF13549 ATP-grasp_5: ATP-gras 27.9 1.2E+02 0.0025 27.7 5.0 81 21-101 8-102 (222)
101 PF07071 DUF1341: Protein of u 27.8 99 0.0021 28.1 4.4 57 4-60 111-180 (218)
102 TIGR00538 hemN oxygen-independ 27.7 1.6E+02 0.0034 29.6 6.4 99 26-135 151-286 (455)
103 PRK09249 coproporphyrinogen II 26.8 2.2E+02 0.0048 28.6 7.3 26 110-135 260-286 (453)
104 KOG0093 GTPase Rab3, small G p 26.4 1.4E+02 0.0031 26.0 4.9 59 40-106 72-137 (193)
105 COG3250 LacZ Beta-galactosidas 26.1 3.5E+02 0.0076 29.7 9.0 81 27-107 325-409 (808)
106 PRK09058 coproporphyrinogen II 25.1 1.3E+02 0.0028 30.3 5.3 100 27-134 164-299 (449)
107 PRK14332 (dimethylallyl)adenos 24.8 7.2E+02 0.016 25.0 14.4 129 96-247 261-398 (449)
108 PF02579 Nitro_FeMo-Co: Dinitr 24.7 1.9E+02 0.0042 21.5 5.1 45 25-70 42-86 (94)
109 TIGR03234 OH-pyruv-isom hydrox 24.7 1.9E+02 0.0041 26.1 5.9 50 11-61 3-56 (254)
110 PRK12581 oxaloacetate decarbox 24.1 1.2E+02 0.0026 31.0 4.7 37 29-65 111-153 (468)
111 PF14587 Glyco_hydr_30_2: O-Gl 23.0 5.7E+02 0.012 25.5 9.0 94 48-141 108-229 (384)
112 cd02878 GH18_zymocin_alpha Zym 22.8 6.3E+02 0.014 24.2 9.4 57 110-185 133-189 (345)
113 PRK09989 hypothetical protein; 22.7 2E+02 0.0044 26.1 5.7 51 11-62 4-58 (258)
114 cd00854 NagA N-acetylglucosami 22.6 1.2E+02 0.0026 29.5 4.4 44 22-66 145-194 (374)
115 PF13756 Stimulus_sens_1: Stim 22.5 64 0.0014 26.1 2.0 24 24-47 2-28 (112)
116 PF12249 AftA_C: Arabinofurano 21.9 27 0.00058 30.8 -0.3 43 145-187 25-72 (178)
117 PRK14328 (dimethylallyl)adenos 21.8 8E+02 0.017 24.4 13.9 59 110-185 280-338 (439)
118 PRK00448 polC DNA polymerase I 21.7 1.7E+02 0.0037 34.2 5.8 47 20-66 347-398 (1437)
119 COG1242 Predicted Fe-S oxidore 21.4 2.4E+02 0.0052 27.1 5.8 62 7-71 112-199 (312)
120 PRK11449 putative deoxyribonuc 21.3 4.6E+02 0.0099 24.2 7.8 37 235-272 89-125 (258)
121 PRK06552 keto-hydroxyglutarate 21.1 6.1E+02 0.013 22.8 9.7 86 23-126 117-210 (213)
122 PF14903 WG_beta_rep: WG conta 21.0 70 0.0015 19.4 1.6 16 305-320 1-16 (35)
123 PF07799 DUF1643: Protein of u 20.7 1E+02 0.0022 25.4 3.0 38 147-186 21-60 (136)
124 PRK14334 (dimethylallyl)adenos 20.2 8.7E+02 0.019 24.2 15.3 58 110-184 270-327 (440)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.9e-89 Score=650.50 Aligned_cols=307 Identities=49% Similarity=0.847 Sum_probs=253.8
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhc
Q 039749 11 IGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAY 90 (321)
Q Consensus 11 ~Gi~Yg~~~~~~ps~~~v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~ 90 (321)
||||||+.|+|+|+|+++++|+|+++|++||||++|+.+|+|++++||+|++||+|++++++++++..|..|++++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCC--CceEeeeeeceeccccCCCCCcccccchhHHHhhhHHH
Q 039749 91 IPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANV--NVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPF 168 (321)
Q Consensus 91 ~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl--~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~f 168 (321)
+|.++|++|+||||++.......|+|+|+++|++|.+.|| +|||+|++.++++..+||||+|.|++++.++|+++++|
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~f 160 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKF 160 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHHH
Confidence 9999999999999999763223899999999999999999 69999999999999999999999999999999999999
Q ss_pred HHhcCCcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCCceEEEeeccCCC
Q 039749 169 LQQNQYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETGWPS 248 (321)
Q Consensus 169 L~~~~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtGWPs 248 (321)
|.++++||++|+||||.+..+|.+++|+||+|++++... |+++.|+||||+|+|++++||+++|+++++|+||||||||
T Consensus 161 L~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs 239 (310)
T PF00332_consen 161 LDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPS 239 (310)
T ss_dssp HHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---S
T ss_pred hhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEecccccc
Confidence 999999999999999999999999999999999887666 7789999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCCC-CCcCceeeecCCCceeeeccc
Q 039749 249 AGADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPA-GTEQNFGLFYPDMTPVYPVNI 320 (321)
Q Consensus 249 ~G~~~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe~wK~~-~~E~~wGlf~~d~~~ky~l~~ 320 (321)
+|+.+|+.+||+.|++++++++.+ |||+||+..+++||||||||+||++ .+|||||||++||+|||+|+|
T Consensus 240 ~G~~~a~~~nA~~~~~nl~~~~~~--gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 240 AGDPGATPENAQAYNQNLIKHVLK--GTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SSSTTCSHHHHHHHHHHHHHHCCG--BBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred CCCCCCCcchhHHHHHHHHHHHhC--CCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999999999999999999999986 9999999999999999999999994 599999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-48 Score=352.00 Aligned_cols=247 Identities=24% Similarity=0.345 Sum_probs=201.7
Q ss_pred ccceeeEEecCCCCC--CCCHHHHHHHHhc-CCC-CEEEEcCCC----hhHHHHHhhCCCEEEEeeccchhhHHhhcHHH
Q 039749 7 GAQVIGVNYGLLGNN--LPSADQVIALIKS-NKI-NKVRIFQPY----QGVLQTLKDSNLEVVLGTLNEDLQQLATDQSF 78 (321)
Q Consensus 7 ~~~~~Gi~Yg~~~~~--~ps~~~v~~ll~s-~~~-~~VR~Y~~d----~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~ 78 (321)
+.+..|||||++.++ |||.+++..+|.. ..+ ..||+|++| .+|++|+...|+||+||||..+..+-+ .
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~--~-- 117 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA--V-- 117 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh--H--
Confidence 467899999999876 8999999766643 233 399999877 479999999999999999975533322 1
Q ss_pred HHHHHHHhchhcCCCceEEEEEccccccCC-C-chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCccccc
Q 039749 79 AANWVKDNVLAYIPSVKFRYITLGNEVIPG-Q-YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQ 156 (321)
Q Consensus 79 a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~-~-~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~ 156 (321)
+.-+..++.+++.++.|++|+||||+|+| + ++++|+.+|..+|++|+++|+.+||+|+++|.+|.++ |
T Consensus 118 -~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~n-p-------- 187 (305)
T COG5309 118 -EKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINN-P-------- 187 (305)
T ss_pred -HHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCC-h--------
Confidence 22345678888888999999999999999 6 9999999999999999999999999999999999762 2
Q ss_pred chhHHHhhhHHHHHhcCCcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCC
Q 039749 157 DSSAAMSKIVPFLQQNQYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNG 236 (321)
Q Consensus 157 ~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~ 236 (321)
.|+++.||+|+|.||||+.+.- .++.+ + ++-.|+.-++.+ +| .+
T Consensus 188 -----------~l~~~SDfia~N~~aYwd~~~~-----------------a~~~~---~-f~~~q~e~vqsa---~g-~~ 231 (305)
T COG5309 188 -----------ELCQASDFIAANAHAYWDGQTV-----------------ANAAG---T-FLLEQLERVQSA---CG-TK 231 (305)
T ss_pred -----------HHhhhhhhhhcccchhccccch-----------------hhhhh---H-HHHHHHHHHHHh---cC-CC
Confidence 2778999999999999996421 12222 2 333456666544 33 45
Q ss_pred ceEEEeeccCCCCCC----CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCC-C--CCcCceeeec
Q 039749 237 VKVVVSETGWPSAGA----DLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKP-A--GTEQNFGLFY 309 (321)
Q Consensus 237 ~~vvI~EtGWPs~G~----~~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe~wK~-~--~~E~~wGlf~ 309 (321)
|+++|+||||||.|. +.||++||..|+++++|.+++ .++++|+||+|||+||. + ++|+|||++.
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~ 302 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWGVLS 302 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhceeeec
Confidence 999999999999998 379999999999999999986 46999999999999998 2 7999999999
Q ss_pred CCC
Q 039749 310 PDM 312 (321)
Q Consensus 310 ~d~ 312 (321)
.++
T Consensus 303 s~~ 305 (305)
T COG5309 303 SDR 305 (305)
T ss_pred cCC
Confidence 875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.15 E-value=4.5e-09 Score=101.01 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCCCEEEE--c-CC------C-h---hHHHHHhhCCCEEEEeeccch---------hh------HHhhcH
Q 039749 25 ADQVIALIKSNKINKVRI--F-QP------Y-Q---GVLQTLKDSNLEVVLGTLNED---------LQ------QLATDQ 76 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~--Y-~~------d-~---~vl~A~~~~gi~v~lGv~~~~---------~~------~~a~~~ 76 (321)
..++.++||..|++.||+ | ++ | . ...+.+++.||+|+|-.--+| ++ ++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 367899999999986655 4 21 2 2 344556689999999985432 10 111112
Q ss_pred HHHHHHHHHhchhcC-CCceEEEEEccccccCC--------CchHHHHHHHHHHHHHHHhCCCCceEe--eeeeceeccc
Q 039749 77 SFAANWVKDNVLAYI-PSVKFRYITLGNEVIPG--------QYANFVYDPMQNVQNALKAANVNVPVT--TVVSYAVLGS 145 (321)
Q Consensus 77 ~~a~~wv~~~v~~~~-~~~~i~~I~VGNEvl~~--------~~~~~l~~am~~v~~aL~~~gl~i~Vs--T~~~~~~l~~ 145 (321)
++..++.++-+.... -+...+.|-||||.-.+ ...+.+...++...+++++.+-++||- .+...+
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~---- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGD---- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTS----
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCc----
Confidence 233333333332221 24678899999998653 146777778877788888755444443 222111
Q ss_pred cCCCCCcccccchhHHHhhhHHHHHhc---CCcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHHHHHHH
Q 039749 146 SYPPSNASFGQDSSAAMSKIVPFLQQN---QYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMI 222 (321)
Q Consensus 146 s~PPs~g~f~~~~~~~~~~~l~fL~~~---~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~ 222 (321)
....+-..+.|.+. -|+|+++.||||... -+.+...+
T Consensus 182 -------------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~---------------------------l~~l~~~l 221 (332)
T PF07745_consen 182 -------------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT---------------------------LEDLKNNL 221 (332)
T ss_dssp -------------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST----------------------------HHHHHHHH
T ss_pred -------------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch---------------------------HHHHHHHH
Confidence 01122233333333 399999999999841 11222233
Q ss_pred HHHHHHHHHhCCCCceEEEeeccCCCCCC-----------------CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 039749 223 DAMYVALEKVGGNGVKVVVSETGWPSAGA-----------------DLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLE 285 (321)
Q Consensus 223 da~~~al~~~g~~~~~vvI~EtGWPs~G~-----------------~~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~ 285 (321)
..+ .++ + +|+|+|.|||||..-. -.+|++.|+.|++++++.+++. |. +..+-
T Consensus 222 ~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~G 290 (332)
T PF07745_consen 222 NDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGLG 290 (332)
T ss_dssp HHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEE
T ss_pred HHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeEE
Confidence 322 123 3 5999999999999821 1368999999999999998752 11 13466
Q ss_pred EEEEEee-cCCCC-----CC-CCcCceeeecCCCceeeecc
Q 039749 286 AYIFALF-NENQK-----PA-GTEQNFGLFYPDMTPVYPVN 319 (321)
Q Consensus 286 ~y~F~~f-De~wK-----~~-~~E~~wGlf~~d~~~ky~l~ 319 (321)
+|+-|.- -..++ .+ .+|.. +||+.+|++--.|+
T Consensus 291 vfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp EEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred EEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 7766532 22211 11 23333 89999998765553
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.14 E-value=7.4e-10 Score=104.58 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=99.1
Q ss_pred eeEEecCCCCC--------CCCHH---HHHHHHhcCCCCEEEEcCCCh-----hHHHHHhhCCCEEEEeeccchhhHHhh
Q 039749 11 IGVNYGLLGNN--------LPSAD---QVIALIKSNKINKVRIFQPYQ-----GVLQTLKDSNLEVVLGTLNEDLQQLAT 74 (321)
Q Consensus 11 ~Gi~Yg~~~~~--------~ps~~---~v~~ll~s~~~~~VR~Y~~d~-----~vl~A~~~~gi~v~lGv~~~~~~~~a~ 74 (321)
.||.|.+-++. |-.++ ..+.+||++|++.||+|..|| ..+++|++.||-|++.+... -.++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 79999988762 22232 235688999999999998874 68999999999999999754 222221
Q ss_pred cHHHHHHH-------HHHhchhcCCCceEEEEEccccccCC--C--chHHHHHHHHHHHHHHHhCCC-CceEeeeeecee
Q 039749 75 DQSFAANW-------VKDNVLAYIPSVKFRYITLGNEVIPG--Q--YANFVYDPMQNVQNALKAANV-NVPVTTVVSYAV 142 (321)
Q Consensus 75 ~~~~a~~w-------v~~~v~~~~~~~~i~~I~VGNEvl~~--~--~~~~l~~am~~v~~aL~~~gl-~i~VsT~~~~~~ 142 (321)
... +..| ...-|..|..-.++-+..+|||++.. + .++.+-.+++++|+-+++.++ .|||+-+-.-.
T Consensus 109 ~~P-~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVGYsaaD~- 186 (314)
T PF03198_consen 109 SDP-APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVGYSAADD- 186 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE----
T ss_pred CCC-cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEccCC-
Confidence 111 1122 22234444444789999999999986 2 688899999999999999999 89999654221
Q ss_pred ccccCCCCCcccccchhHHHhhhHHHHH-----hcCCcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHH
Q 039749 143 LGSSYPPSNASFGQDSSAAMSKIVPFLQ-----QNQYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNM 217 (321)
Q Consensus 143 l~~s~PPs~g~f~~~~~~~~~~~l~fL~-----~~~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~ 217 (321)
- .+ ..++.+||. +..|++++|.|-+=.. ..|+ . ..|..+
T Consensus 187 ~---------~~-------r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~-----------Stf~-------~--SGy~~l 230 (314)
T PF03198_consen 187 A---------EI-------RQDLANYLNCGDDDERIDFFGLNSYEWCGD-----------STFE-------T--SGYDRL 230 (314)
T ss_dssp T---------TT-------HHHHHHHTTBTT-----S-EEEEE----SS-------------HH-------H--HSHHHH
T ss_pred h---------hH-------HHHHHHHhcCCCcccccceeeeccceecCC-----------Cccc-------c--ccHHHH
Confidence 0 11 124455553 3569999999875431 0111 1 125444
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeeccCCCCC
Q 039749 218 FDAMIDAMYVALEKVGGNGVKVVVSETGWPSAG 250 (321)
Q Consensus 218 ~da~~da~~~al~~~g~~~~~vvI~EtGWPs~G 250 (321)
.+. . .++ .+||+.+|.|.-+..
T Consensus 231 ~~~--------f--~~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 231 TKE--------F--SNY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp HHH--------H--TT--SS-EEEEEE---SSS
T ss_pred HHH--------h--hCC-CCCeEEcccCCCCCC
Confidence 321 1 234 599999999997653
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=8.2e-06 Score=76.57 Aligned_cols=242 Identities=19% Similarity=0.250 Sum_probs=133.0
Q ss_pred HHHHHHHHhcCCCCEEEE--c----CCC-----------h---hHHHHHhhCCCEEEEeeccchh---h-----------
Q 039749 25 ADQVIALIKSNKINKVRI--F----QPY-----------Q---GVLQTLKDSNLEVVLGTLNEDL---Q----------- 70 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~--Y----~~d-----------~---~vl~A~~~~gi~v~lGv~~~~~---~----------- 70 (321)
.+++.++||..|++.||+ | |.| . ++-+.+++.||||++-.--+|- +
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 567789999999986655 4 333 1 3445566799999998754331 0
Q ss_pred -HHhhcHHHHHHHHHHhchhcC-CCceEEEEEccccccCC------C--chHHHHHHHHHHHHHHHhCCCCceEeeeeec
Q 039749 71 -QLATDQSFAANWVKDNVLAYI-PSVKFRYITLGNEVIPG------Q--YANFVYDPMQNVQNALKAANVNVPVTTVVSY 140 (321)
Q Consensus 71 -~~a~~~~~a~~wv~~~v~~~~-~~~~i~~I~VGNEvl~~------~--~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~ 140 (321)
+..+-+.+.-+.-+.-+.... -...+..|-||||.-.+ + .-..+...++.--++++...-.|+|---
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lH--- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALH--- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEE---
Confidence 000001111111111111111 13557789999998643 1 2344455555555555543334555432
Q ss_pred eeccccCCCCCcccccchhHHHhhhHHHHHhcC---CcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHH
Q 039749 141 AVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQ---YPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNM 217 (321)
Q Consensus 141 ~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~---d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~ 217 (321)
+.+ |--.+.|+ -+.+.|.+.. |.|++--||||...- .||
T Consensus 222 --la~--g~~n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl--------------------------~nL 263 (403)
T COG3867 222 --LAE--GENNSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTL--------------------------NNL 263 (403)
T ss_pred --ecC--CCCCchhh--------HHHHHHHHcCCCceEEeeeccccccCcH--------------------------HHH
Confidence 222 22223442 2233343332 889999999998521 111
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeeccC--------------CCCCCC---CCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 039749 218 FDAMIDAMYVALEKVGGNGVKVVVSETGW--------------PSAGAD---LATTNNAKTYVNNVIQRVLTGKGTPKRP 280 (321)
Q Consensus 218 ~da~~da~~~al~~~g~~~~~vvI~EtGW--------------Ps~G~~---~as~~na~~y~~~~i~~~~~~~gtp~rp 280 (321)
-- .++. +.. - -+|.|+|.||+. |+.|.. ..++.-|++|.+++|+.+.+ +|...
T Consensus 264 ~~-nl~d----ia~-r-Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp~~~ 333 (403)
T COG3867 264 TT-NLND----IAS-R-YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VPKSN 333 (403)
T ss_pred Hh-HHHH----HHH-H-hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CCCCC
Confidence 11 1111 111 1 268999999998 666653 47788999999999999874 23222
Q ss_pred CCCccEEEEE-------------------eecCCCCCCCCcCceeeecCCCceeeecc
Q 039749 281 ETPLEAYIFA-------------------LFNENQKPAGTEQNFGLFYPDMTPVYPVN 319 (321)
Q Consensus 281 g~~~~~y~F~-------------------~fDe~wK~~~~E~~wGlf~~d~~~ky~l~ 319 (321)
+.-+|+.| .-.|+|+.+..-.+=-||+-+|.|--+|+
T Consensus 334 --GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl~ 389 (403)
T COG3867 334 --GLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSLN 389 (403)
T ss_pred --ceEEEEecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcchh
Confidence 24444443 22366665433344468888888766654
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.49 E-value=6.7e-05 Score=77.93 Aligned_cols=235 Identities=11% Similarity=0.091 Sum_probs=131.9
Q ss_pred HHHHhcCCCCEEEEcC--CChhHHHHHhhCCCEEEEeeccch---------------hhHHh------hcHHHHHHHHHH
Q 039749 29 IALIKSNKINKVRIFQ--PYQGVLQTLKDSNLEVVLGTLNED---------------LQQLA------TDQSFAANWVKD 85 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~--~d~~vl~A~~~~gi~v~lGv~~~~---------------~~~~a------~~~~~a~~wv~~ 85 (321)
++++|..|++.||+-. .++..+.+|...||-|+.=++... ..... +..+....-+++
T Consensus 319 ~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (604)
T PRK10150 319 HNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRE 398 (604)
T ss_pred HHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 5678999999999943 257899999999999886543210 00000 011122222455
Q ss_pred hchhcCCCceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhh
Q 039749 86 NVLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKI 165 (321)
Q Consensus 86 ~v~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~ 165 (321)
.|..+...-.|..-.+|||.-... ...-..++.+.+.+++..-.=+|+.+..+. . +|....
T Consensus 399 mv~r~~NHPSIi~Ws~gNE~~~~~--~~~~~~~~~l~~~~k~~DptR~vt~~~~~~---~--~~~~~~------------ 459 (604)
T PRK10150 399 LIARDKNHPSVVMWSIANEPASRE--QGAREYFAPLAELTRKLDPTRPVTCVNVMF---A--TPDTDT------------ 459 (604)
T ss_pred HHHhccCCceEEEEeeccCCCccc--hhHHHHHHHHHHHHHhhCCCCceEEEeccc---C--Cccccc------------
Confidence 566654444588999999974321 122233444444454443233455443110 0 110000
Q ss_pred HHHHHhcCCcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCCceEEEeecc
Q 039749 166 VPFLQQNQYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETG 245 (321)
Q Consensus 166 l~fL~~~~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtG 245 (321)
+....|+++.|.|+=|-. ++.+. ......++..+... .+. + +||++++|.|
T Consensus 460 ---~~~~~Dv~~~N~Y~~wy~--~~~~~------------------~~~~~~~~~~~~~~----~~~-~-~kP~~isEyg 510 (604)
T PRK10150 460 ---VSDLVDVLCLNRYYGWYV--DSGDL------------------ETAEKVLEKELLAW----QEK-L-HKPIIITEYG 510 (604)
T ss_pred ---ccCcccEEEEcccceecC--CCCCH------------------HHHHHHHHHHHHHH----HHh-c-CCCEEEEccC
Confidence 223469999998763321 10000 00112222222211 111 2 7999999999
Q ss_pred CCCCC------CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCCC---CCcCceeeecCCCceee
Q 039749 246 WPSAG------ADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKPA---GTEQNFGLFYPDMTPVY 316 (321)
Q Consensus 246 WPs~G------~~~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe~wK~~---~~E~~wGlf~~d~~~ky 316 (321)
+.+.- +..-|.+.|..|++...+.+.+ +|. -+-.|+..+||-....+ --..+.||++.||+||-
T Consensus 511 ~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~ 583 (604)
T PRK10150 511 ADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPKS 583 (604)
T ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCChH
Confidence 76532 1245788999998887777764 343 46689999999554431 12347899999999996
Q ss_pred ec
Q 039749 317 PV 318 (321)
Q Consensus 317 ~l 318 (321)
..
T Consensus 584 ~~ 585 (604)
T PRK10150 584 AA 585 (604)
T ss_pred HH
Confidence 43
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.41 E-value=5.4e-05 Score=69.77 Aligned_cols=220 Identities=19% Similarity=0.145 Sum_probs=119.9
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCC-------------C-------hhHHHHHhhCCCEEEEeeccch-
Q 039749 10 VIGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQP-------------Y-------QGVLQTLKDSNLEVVLGTLNED- 68 (321)
Q Consensus 10 ~~Gi~Yg~~~~~~ps~~~v~~ll~s~~~~~VR~Y~~-------------d-------~~vl~A~~~~gi~v~lGv~~~~- 68 (321)
..|+|-. ..+.. ..++.++.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3455554 22212 7788899999999999999721 1 2578889999999999887630
Q ss_pred ---hhHHhhcHHHHHHHHH----HhchhcCCCceEEEEEccccccCC-Cc-------hHHHHHHHHHHHHHHHhCCCCce
Q 039749 69 ---LQQLATDQSFAANWVK----DNVLAYIPSVKFRYITLGNEVIPG-QY-------ANFVYDPMQNVQNALKAANVNVP 133 (321)
Q Consensus 69 ---~~~~a~~~~~a~~wv~----~~v~~~~~~~~i~~I~VGNEvl~~-~~-------~~~l~~am~~v~~aL~~~gl~i~ 133 (321)
-............|++ .-...|.....|.++=+.||.... .. ...+.+.++.+-+++++.+-+.+
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 0000111122222222 223334244558899999999875 21 37788999999999999987433
Q ss_pred EeeeeeceeccccCCCCCcccccchhHHH--hhhHHHHHhcCCcceeccCCcccccCCCCccCccccccCCCCccccCCc
Q 039749 134 VTTVVSYAVLGSSYPPSNASFGQDSSAAM--SKIVPFLQQNQYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGT 211 (321)
Q Consensus 134 VsT~~~~~~l~~s~PPs~g~f~~~~~~~~--~~~l~fL~~~~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~ 211 (321)
|...... |.. +..... .|. .....+.+.+|.|+.+....... ...
T Consensus 168 i~~~~~~--~~~-----------~~~~~~~~~P~---~~~~~~~~~~H~Y~~~~~~~~~~-----------------~~~ 214 (281)
T PF00150_consen 168 IIVGGGG--WGA-----------DPDGAAADNPN---DADNNDVYSFHFYDPYDFSDQWN-----------------PGN 214 (281)
T ss_dssp EEEEEHH--HHT-----------BHHHHHHHSTT---TTTTSEEEEEEEETTTCHHTTTS-----------------TCS
T ss_pred eecCCCc--ccc-----------ccchhhhcCcc---cccCceeEEeeEeCCCCcCCccc-----------------ccc
Confidence 3332210 211 000000 110 12345667777776554321100 000
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCCCceEEEeeccCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 039749 212 LSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETGWPSAGADLATTNNAKTYVNNVIQRVLT 272 (321)
Q Consensus 212 ~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtGWPs~G~~~as~~na~~y~~~~i~~~~~ 272 (321)
....+.....++.....+.+. ++||+|+|.|+++.++. ....+.+.++..+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~---g~pv~~gE~G~~~~~~~-----~~~~~~~~~~~~~~~ 267 (281)
T PF00150_consen 215 WGDASALESSFRAALNWAKKN---GKPVVVGEFGWSNNDGN-----GSTDYADAWLDYLEQ 267 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TSEEEEEEEESSTTTSC-----HHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHc---CCeEEEeCcCCcCCCCC-----cCHHHHHHHHHHHHH
Confidence 111223333444444444443 57999999999965544 334444445665554
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.93 E-value=0.0017 Score=60.18 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=53.7
Q ss_pred HHHhCCCCceEEEeeccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecC-CCCCCCCcCceee
Q 039749 229 LEKVGGNGVKVVVSETGWPSAGADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNE-NQKPAGTEQNFGL 307 (321)
Q Consensus 229 l~~~g~~~~~vvI~EtGWPs~G~~~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe-~wK~~~~E~~wGl 307 (321)
|++++-.++||+|||.+-|..+ +++.|+.++++++..+.+. |+ ...+++..+.|. .|.+ +.+-||
T Consensus 175 l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~------p~-v~gi~~Wg~~d~~~W~~---~~~~~L 240 (254)
T smart00633 175 LDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH------PA-VTGVTVWGVTDKYSWLD---GGAPLL 240 (254)
T ss_pred HHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC------CC-eeEEEEeCCccCCcccC---CCCcee
Confidence 3444334799999999998753 4588899999999988762 22 244666666663 4543 257899
Q ss_pred ecCCCceeeec
Q 039749 308 FYPDMTPVYPV 318 (321)
Q Consensus 308 f~~d~~~ky~l 318 (321)
|+.|++||-.+
T Consensus 241 ~d~~~~~kpa~ 251 (254)
T smart00633 241 FDANYQPKPAY 251 (254)
T ss_pred ECCCCCCChhh
Confidence 99999998654
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.69 E-value=0.0021 Score=59.27 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=117.7
Q ss_pred cCCCCEEEEcCCChhHHHHHhhCCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCC-C---
Q 039749 34 SNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPG-Q--- 109 (321)
Q Consensus 34 s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~-~--- 109 (321)
+.+++-.=-|++.+.- .....+++-+-.+|.....+ ..|++ +|+.. ...++.|..=||.=.. +
T Consensus 17 ~~~~sW~YnW~~~~~~--~~~~~~~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~ 83 (239)
T PF11790_consen 17 SSNVSWYYNWGSSPSG--SLDSAGLEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNM 83 (239)
T ss_pred CCCcEEEeCCCCCCCC--CCCCCceeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCC
Confidence 3456666445554311 11222378888888643221 11211 22221 2468899999998665 2
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHH--hcCCcceeccCCccccc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQ--QNQYPLLANVYPCFAYF 187 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~--~~~d~~~vN~yPyf~~~ 187 (321)
++++.+...++..+.|+.. .+++..+.....-. . +|+. ..-|+..+.-+. ...|++.+|.| .
T Consensus 84 ~p~~aa~~w~~~~~~~~~~--~~~l~sPa~~~~~~-~-~~~g-------~~Wl~~F~~~~~~~~~~D~iavH~Y---~-- 147 (239)
T PF11790_consen 84 SPEEAAALWKQYMNPLRSP--GVKLGSPAVAFTNG-G-TPGG-------LDWLSQFLSACARGCRVDFIAVHWY---G-- 147 (239)
T ss_pred CHHHHHHHHHHHHhHhhcC--CcEEECCeecccCC-C-CCCc-------cHHHHHHHHhcccCCCccEEEEecC---C--
Confidence 7888888888777777754 36666543210000 0 0111 123444443322 14577777766 1
Q ss_pred CCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCCceEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q 039749 188 GEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETGWPSAGADLATTNNAKTYVNNVI 267 (321)
Q Consensus 188 ~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtGWPs~G~~~as~~na~~y~~~~i 267 (321)
.++ .-|...++.++ ++.| |||+|||.|+.. +....+.+.++.|++..+
T Consensus 148 ~~~-------------------------~~~~~~i~~~~---~~~~---kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~ 195 (239)
T PF11790_consen 148 GDA-------------------------DDFKDYIDDLH---NRYG---KPIWITEFGCWN-GGSQGSDEQQASFLRQAL 195 (239)
T ss_pred cCH-------------------------HHHHHHHHHHH---HHhC---CCEEEEeecccC-CCCCCCHHHHHHHHHHHH
Confidence 000 11223344332 3333 999999999877 455789999999999999
Q ss_pred HHHhcCCCCCCCCCCCccEEEEEeecCCCCCCCCcCceeeecCCCce
Q 039749 268 QRVLTGKGTPKRPETPLEAYIFALFNENQKPAGTEQNFGLFYPDMTP 314 (321)
Q Consensus 268 ~~~~~~~gtp~rpg~~~~~y~F~~fDe~wK~~~~E~~wGlf~~d~~~ 314 (321)
..+.+ ++. --.++||...+. +. .....-.|++.+|++
T Consensus 196 ~~ld~------~~~-VeryawF~~~~~-~~--~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 196 PWLDS------QPY-VERYAWFGFMND-GS--GVNPNSALLDADGSL 232 (239)
T ss_pred HHHhc------CCC-eeEEEecccccc-cC--CCccccccccCCCCc
Confidence 99875 232 346778883332 22 355666777877754
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.38 E-value=0.0076 Score=56.96 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=55.2
Q ss_pred eeeEEecCCCCC---CCCHHHH---HHHHhcCCCCEEEEcCC--ChhHHHHHhhCCCEEEEeeccchh---hHH------
Q 039749 10 VIGVNYGLLGNN---LPSADQV---IALIKSNKINKVRIFQP--YQGVLQTLKDSNLEVVLGTLNEDL---QQL------ 72 (321)
Q Consensus 10 ~~Gi~Yg~~~~~---~ps~~~v---~~ll~s~~~~~VR~Y~~--d~~vl~A~~~~gi~v~lGv~~~~~---~~~------ 72 (321)
..|||+...... .++.++. ++++|..|++.||+..- ++..+.+|...||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 468998864322 3455554 45778999999999643 579999999999999988765110 000
Q ss_pred h---hcHHHHHHHHHHhchhcCCCceEEEEEccccc
Q 039749 73 A---TDQSFAANWVKDNVLAYIPSVKFRYITLGNEV 105 (321)
Q Consensus 73 a---~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEv 105 (321)
. ...+.+..-+++.|..+...-.|-.-.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0 11122333455556555433358888999998
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=96.84 E-value=0.32 Score=48.68 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCEEEEcC------------CC-------hhHHHHHhhCCCEEEEeeccch
Q 039749 26 DQVIALIKSNKINKVRIFQ------------PY-------QGVLQTLKDSNLEVVLGTLNED 68 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y~------------~d-------~~vl~A~~~~gi~v~lGv~~~~ 68 (321)
++.+++|++.|++++|+== .| ..++..|.+.||++++.+.--+
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 5678899999999998631 12 2689999999999999995333
No 12
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.51 E-value=0.021 Score=57.45 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=130.6
Q ss_pred HHHHHHHHhcCCCCEEEEcC------C-------C-------hhHHHHHhhCCCEEEEeeccchhhHH-h-----hcHHH
Q 039749 25 ADQVIALIKSNKINKVRIFQ------P-------Y-------QGVLQTLKDSNLEVVLGTLNEDLQQL-A-----TDQSF 78 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~Y~------~-------d-------~~vl~A~~~~gi~v~lGv~~~~~~~~-a-----~~~~~ 78 (321)
-+|.++||++.|++.-|+== + | .+++..|++.||+-+|.+.--+++.. . .+.+.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 36778999999999998751 1 2 26899999999999999975444431 1 11111
Q ss_pred ---HHHHHHHhchhcCCCceEEEEEccccccCC--------------Cc-------hHHHHHHHHHHHHHHHhCCCCceE
Q 039749 79 ---AANWVKDNVLAYIPSVKFRYITLGNEVIPG--------------QY-------ANFVYDPMQNVQNALKAANVNVPV 134 (321)
Q Consensus 79 ---a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~--------------~~-------~~~l~~am~~v~~aL~~~gl~i~V 134 (321)
-.+..+.-+..| .+.|+..+.=||...- .. .-.++-|-..+.+++++.+-+.+|
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~I 217 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKI 217 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEE
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEE
Confidence 122222233444 3568888888887521 01 122444444555566665556778
Q ss_pred eeeeeceeccc--cCCCC---------------------CcccccchhHHHh----------hhHHHHHhcCCcceeccC
Q 039749 135 TTVVSYAVLGS--SYPPS---------------------NASFGQDSSAAMS----------KIVPFLQQNQYPLLANVY 181 (321)
Q Consensus 135 sT~~~~~~l~~--s~PPs---------------------~g~f~~~~~~~~~----------~~l~fL~~~~d~~~vN~y 181 (321)
+.++......- ..|+. .|.|...+...+. .-+..|....||+++|-|
T Consensus 218 Gi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYY 297 (455)
T PF00232_consen 218 GIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYY 297 (455)
T ss_dssp EEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEES
T ss_pred eccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccc
Confidence 77766543210 00111 0111111111111 112334557899999998
Q ss_pred CcccccCCC-CccCcccc---ccCC---CCccccCCc-cchHHHHHHHHHHHHHHHHHhCCCCceEEEeeccCCCCCCC-
Q 039749 182 PCFAYFGEP-TTIDADYA---LGNP---NASFVYDGT-LSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETGWPSAGAD- 252 (321)
Q Consensus 182 Pyf~~~~~p-~~i~~~~A---~f~~---~~~~~~~~~-~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtGWPs~G~~- 252 (321)
.=---...+ ...+..+. .+.. +.....+.+ ..|-.-+-.++. ..-+ -++++||+|||.|++.....
T Consensus 298 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~---~l~~--~Y~~~pI~ITENG~~~~~~~~ 372 (455)
T PF00232_consen 298 TSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLR---YLKD--RYGNPPIYITENGIGDPDEVD 372 (455)
T ss_dssp EEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHH---HHHH--HHTSSEEEEEEE---EETTCT
T ss_pred cceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhh---hhcc--ccCCCcEEEeccccccccccc
Confidence 633222222 01111111 0000 000001111 111111111221 1112 25679999999999877542
Q ss_pred -C-----CCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCC-CCCcCceeeecCC------Cceeee
Q 039749 253 -L-----ATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKP-AGTEQNFGLFYPD------MTPVYP 317 (321)
Q Consensus 253 -~-----as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe~wK~-~~~E~~wGlf~~d------~~~ky~ 317 (321)
+ --..--+.++..+.+.+.. |-+ -.-+|..++.| ++-- .+..+.|||++-| |+||-+
T Consensus 373 ~~~v~D~~Ri~yl~~hl~~v~~Ai~d--Gv~-----V~GY~~WSl~D-n~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 373 DGKVDDDYRIDYLQDHLNQVLKAIED--GVN-----VRGYFAWSLLD-NFEWAEGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp TSHBSHHHHHHHHHHHHHHHHHHHHT--T-E-----EEEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBHH
T ss_pred ccCcCcHHHHHHHHHHHHHHHhhhcc--CCC-----eeeEeeecccc-ccccccCccCccCceEEcCCCCcCeeeccH
Confidence 1 1112224444455555544 432 23477788887 3322 3688999999999 777754
No 13
>PLN02998 beta-glucosidase
Probab=94.25 E-value=6.7 Score=40.16 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCEEEE-------cC-----CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 25 ADQVIALIKSNKINKVRI-------FQ-----PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~-------Y~-----~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
-+|.++|++++|++.-|+ += .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 357788999998877765 21 23 3689999999999999997555543
No 14
>PLN02814 beta-glucosidase
Probab=92.47 E-value=14 Score=37.87 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCEEEE-------cC-----CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 25 ADQVIALIKSNKINKVRI-------FQ-----PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~-------Y~-----~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
-+|.++|++++|++.-|+ += .| .+++.+|.+.||+-+|.+.=-+++.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 357788999988877664 31 13 3689999999999999997555554
No 15
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=89.83 E-value=4.2 Score=38.53 Aligned_cols=83 Identities=12% Similarity=0.193 Sum_probs=50.8
Q ss_pred hhHHHHHhhCCCEEEEeeccch--------hhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCCCchHHHHHHH
Q 039749 47 QGVLQTLKDSNLEVVLGTLNED--------LQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQYANFVYDPM 118 (321)
Q Consensus 47 ~~vl~A~~~~gi~v~lGv~~~~--------~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am 118 (321)
+.++.++++.|+||++.|-+.. ...+.++++.-...++ ++..+...-.+.+|-+-=|.+..+.....+..|
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl 126 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPPEDREAYTQFL 126 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCHHHHHHHHHHH
Confidence 5788888889999998886532 2344555443333333 332222111345555554554323455688999
Q ss_pred HHHHHHHHhCCC
Q 039749 119 QNVQNALKAANV 130 (321)
Q Consensus 119 ~~v~~aL~~~gl 130 (321)
+++|.+|.+.|+
T Consensus 127 ~~lr~~l~~~~~ 138 (313)
T cd02874 127 RELSDRLHPAGY 138 (313)
T ss_pred HHHHHHhhhcCc
Confidence 999999988775
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.96 E-value=12 Score=36.48 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=75.4
Q ss_pred CCCEEEEcCC-ChhHHHHHhhCCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCC---Cch
Q 039749 36 KINKVRIFQP-YQGVLQTLKDSNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPG---QYA 111 (321)
Q Consensus 36 ~~~~VR~Y~~-d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~---~~~ 111 (321)
.+++|-+|+. |++++..+.+.|++|++..-.. .+ ..++++.-.+++++.| .+...-.+.+|-+==|-... ...
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4788888864 7899999999999999864321 22 2234444444544432 22111234455544443321 134
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccc-cchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 112 NFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFG-QDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 112 ~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~-~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
..+...|+++|++|.+.|....++.+..+. |+..... -+ +.-|++.+|++.+-.|=|..
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~Lsvav~~~-------p~~~~~~~yd--------~~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQISFDVAWS-------PSCIDKRCYD--------YTGIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEecC-------cccccccccC--------HHHHHhhCCEeeEEeecccC
Confidence 678899999999999876433344333221 1110000 01 22367788999999987753
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.26 E-value=2.5 Score=41.32 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCEEEEcCC-------C---------hhHHHHHhhCCCEEEEeeccchhhHH----------------
Q 039749 25 ADQVIALIKSNKINKVRIFQP-------Y---------QGVLQTLKDSNLEVVLGTLNEDLQQL---------------- 72 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~Y~~-------d---------~~vl~A~~~~gi~v~lGv~~~~~~~~---------------- 72 (321)
-++.+++++..|++.|||-.. . -.+|..+++.||+|+|+++....+..
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 356677888999999998432 1 25788889999999999964221110
Q ss_pred ----------h----hcHHHHHHHHHHhchhcCCCceEEEEEccccccC
Q 039749 73 ----------A----TDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIP 107 (321)
Q Consensus 73 ----------a----~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~ 107 (321)
. .-.+.+.+.++.-+..|...-.|.++-|+||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 0123445555555566655567999999999765
No 18
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=85.90 E-value=43 Score=34.11 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCCEEEE-------cC------CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 25 ADQVIALIKSNKINKVRI-------FQ------PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~-------Y~------~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
-+|.++||+++|++.-|+ += .| .+++.+|.+.||+-+|.++--+++.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 467789999998877765 31 13 2688999999999999997655554
No 19
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=85.76 E-value=4.4 Score=39.14 Aligned_cols=172 Identities=15% Similarity=0.183 Sum_probs=66.5
Q ss_pred HHHHHhhCCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhcC-----CCceEEEEEccccccCC----C-chHHHHHHH
Q 039749 49 VLQTLKDSNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAYI-----PSVKFRYITLGNEVIPG----Q-YANFVYDPM 118 (321)
Q Consensus 49 vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~-----~~~~i~~I~VGNEvl~~----~-~~~~l~~am 118 (321)
+..-+..+|++|+.|+-.-.-.........--.|=-+|.+.++ ..-+|.+-=.|||.-.. . ++.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 4444557999999999632111111111233466555543321 12357788889996432 2 678888888
Q ss_pred HHHHHHHHhC---CC-CceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHh-cCCcceeccCCcccccCCCCcc
Q 039749 119 QNVQNALKAA---NV-NVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQ-NQYPLLANVYPCFAYFGEPTTI 193 (321)
Q Consensus 119 ~~v~~aL~~~---gl-~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~-~~d~~~vN~yPyf~~~~~p~~i 193 (321)
..+|+.|+.. .+ .-.|.-+.. .|.. ..+++.|+-..+ ..|.+.-|.|+ +....++. .
T Consensus 194 ~~Lr~il~~iy~~~~~~P~v~gP~~-------------~~d~---~w~~~FL~~~g~~~vD~vT~H~Y~-lg~g~d~~-l 255 (319)
T PF03662_consen 194 IQLRKILNEIYKNALPGPLVVGPGG-------------FFDA---DWLKEFLKASGPGVVDAVTWHHYN-LGSGRDPA-L 255 (319)
T ss_dssp ---HHHHHHHHHH-TT---EEEEEE-------------SS-G---GGHHHHHHHTTTT--SEEEEEEEE-E--TT-TT--
T ss_pred HHHHHHHHHHHhcCCCCCeEECCCC-------------CCCH---HHHHHHHHhcCCCccCEEEEEecC-CCCCchHH-H
Confidence 8888888763 01 223443332 1221 223444433333 26788888885 33222210 0
Q ss_pred CccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCCceEEEeeccCCCCCC
Q 039749 194 DADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETGWPSAGA 251 (321)
Q Consensus 194 ~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtGWPs~G~ 251 (321)
.+..+ +. .|-+.+..++..+...+++.+ |+++++++|||=...|+
T Consensus 256 -~~~~l---------~p--~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 256 -IEDFL---------NP--SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGG 300 (319)
T ss_dssp -HHHHT---------S----HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT-
T ss_pred -HHHhc---------Ch--hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCC
Confidence 00000 11 122222233344443444333 78999999999665554
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.94 E-value=52 Score=33.40 Aligned_cols=246 Identities=15% Similarity=0.139 Sum_probs=113.0
Q ss_pred HHHHHHhcCCCCEEEEcCC---C--------------------hhHHHHHhhCCCEEEEeec--cchhhH-----H----
Q 039749 27 QVIALIKSNKINKVRIFQP---Y--------------------QGVLQTLKDSNLEVVLGTL--NEDLQQ-----L---- 72 (321)
Q Consensus 27 ~v~~ll~s~~~~~VR~Y~~---d--------------------~~vl~A~~~~gi~v~lGv~--~~~~~~-----~---- 72 (321)
++..+.+..||+.||+.+. | -.++..+.+.||+-++-+- ...+.+ +
T Consensus 44 ~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~ 123 (486)
T PF01229_consen 44 QLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKG 123 (486)
T ss_dssp HHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTE
T ss_pred HHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccC
Confidence 3444445689999999842 1 1478888899998755442 111100 0
Q ss_pred ----hhcHHH----HHHHHHHhchhcCCCceEE--EEEccccccCC-----CchHHHHHHHHHHHHHHHhCCCCceEeee
Q 039749 73 ----ATDQSF----AANWVKDNVLAYIPSVKFR--YITLGNEVIPG-----QYANFVYDPMQNVQNALKAANVNVPVTTV 137 (321)
Q Consensus 73 ----a~~~~~----a~~wv~~~v~~~~~~~~i~--~I~VGNEvl~~-----~~~~~l~~am~~v~~aL~~~gl~i~VsT~ 137 (321)
..+.+. ...+++.-+.+|. ...|+ ..=|=||.=.. ....+-....+.+.++|++..=.++|+-+
T Consensus 124 ~~~pp~~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp 202 (486)
T PF01229_consen 124 NISPPKDYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGP 202 (486)
T ss_dssp E-S-BS-HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CcCCcccHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCc
Confidence 011111 1222333333331 01111 34568886433 14456677778888888887667888876
Q ss_pred eeceeccccCCCCCcccccchhHHHhhhHHHHHhc---CCcceeccCCcccccCCCCccCccccccCCCCccccCCccch
Q 039749 138 VSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQN---QYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSY 214 (321)
Q Consensus 138 ~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~---~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y 214 (321)
-.. +. ....+...++|+.+. -||+..|.||+-....... .. ...-...
T Consensus 203 ~~~--~~-------------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~------------~~--~~~~~~~ 253 (486)
T PF01229_consen 203 AFA--WA-------------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINE------------NM--YERIEDS 253 (486)
T ss_dssp EEE--TT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-------------E--EEEB--H
T ss_pred ccc--cc-------------HHHHHHHHHHHHhcCCCCCCEEEEEecccccccccch------------hH--HhhhhhH
Confidence 100 10 012355667777653 4888999998533211000 00 0000011
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEeeccCCCCCCC----CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEE-
Q 039749 215 NNMFDAMIDAMYVALEKVGGNGVKVVVSETGWPSAGAD----LATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIF- 289 (321)
Q Consensus 215 ~n~~da~~da~~~al~~~g~~~~~vvI~EtGWPs~G~~----~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F- 289 (321)
..++.. +--+...+...+.|++++.++| |.+.-.. .-|.-+|+-..+++++.... .++.|-+
T Consensus 254 ~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~syw 320 (486)
T PF01229_consen 254 RRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYW 320 (486)
T ss_dssp HHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES
T ss_pred HHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhcc
Confidence 222222 2222233455678899999999 8776543 34555665555556666542 2333221
Q ss_pred ---EeecCCCCC-CCCcCceeeecCCCcee
Q 039749 290 ---ALFNENQKP-AGTEQNFGLFYPDMTPV 315 (321)
Q Consensus 290 ---~~fDe~wK~-~~~E~~wGlf~~d~~~k 315 (321)
..|.|.--+ ..+-.-|||+..+|-+|
T Consensus 321 t~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 321 TFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp -SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred chhhhhhccCCCCCceecchhhhhccCCCc
Confidence 123332222 23455699999998666
No 21
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=77.30 E-value=26 Score=39.18 Aligned_cols=98 Identities=21% Similarity=0.113 Sum_probs=59.5
Q ss_pred eeeEEecCC---CCCCCCHHHH---HHHHhcCCCCEEEEcCC--ChhHHHHHhhCCCEEEEeeccchh-----hHHhhcH
Q 039749 10 VIGVNYGLL---GNNLPSADQV---IALIKSNKINKVRIFQP--YQGVLQTLKDSNLEVVLGTLNEDL-----QQLATDQ 76 (321)
Q Consensus 10 ~~Gi~Yg~~---~~~~ps~~~v---~~ll~s~~~~~VR~Y~~--d~~vl~A~~~~gi~v~lGv~~~~~-----~~~a~~~ 76 (321)
..|+|+-.. .....+++++ ++++|..|++.||+-.. ++..+..|-..||-|+--++.+.- ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 357776532 1123466654 56778999999999542 578999999999998877543210 0111111
Q ss_pred ---HHHHHHHHHhchhcCCCceEEEEEccccccC
Q 039749 77 ---SFAANWVKDNVLAYIPSVKFRYITLGNEVIP 107 (321)
Q Consensus 77 ---~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~ 107 (321)
++..+-+++.|.+....-.|..-++|||.-.
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 1222224445555543446889999999743
No 22
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=77.17 E-value=22 Score=39.77 Aligned_cols=99 Identities=23% Similarity=0.187 Sum_probs=59.1
Q ss_pred eeeEEecCCC---CCCCCHHHH---HHHHhcCCCCEEEEcCC--ChhHHHHHhhCCCEEEEeeccch--------hhHHh
Q 039749 10 VIGVNYGLLG---NNLPSADQV---IALIKSNKINKVRIFQP--YQGVLQTLKDSNLEVVLGTLNED--------LQQLA 73 (321)
Q Consensus 10 ~~Gi~Yg~~~---~~~ps~~~v---~~ll~s~~~~~VR~Y~~--d~~vl~A~~~~gi~v~lGv~~~~--------~~~~a 73 (321)
..|+|+-... ....+++++ ++++|+.|++.||+-.. ++..+..|...||-|+.-++.+. ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 3577754321 112455544 56788999999999643 46789999999999887543211 00111
Q ss_pred hcH---HHHHHHHHHhchhcCCCceEEEEEccccccCC
Q 039749 74 TDQ---SFAANWVKDNVLAYIPSVKFRYITLGNEVIPG 108 (321)
Q Consensus 74 ~~~---~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~ 108 (321)
.++ ++..+-+++.|.+....-.|..-++|||.-.+
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g 453 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG 453 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc
Confidence 121 12223345556665434468888999998543
No 23
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=73.87 E-value=36 Score=31.21 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=44.7
Q ss_pred hHHHHHhhCCCEEEEeeccchh---hHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCCCchHHHHHHHHHHHHH
Q 039749 48 GVLQTLKDSNLEVVLGTLNEDL---QQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNA 124 (321)
Q Consensus 48 ~vl~A~~~~gi~v~lGv~~~~~---~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~a 124 (321)
..+++++..|+||++.|..... ..+.+++.....++++- ..+...-.+.+|-+==|-... ........++++|++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~l-v~~~~~~~~DGIdiDwE~~~~-~~~~~~~fv~~Lr~~ 127 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKI-INYVVSYNLDGIDVDLEGPDV-TFGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHH-HHHHHHhCCCceeEEeeccCc-cHhHHHHHHHHHHHH
Confidence 4567777789999988754321 22444544444443332 222111123444443343211 134677889999999
Q ss_pred HHhCCC
Q 039749 125 LKAANV 130 (321)
Q Consensus 125 L~~~gl 130 (321)
|++.|+
T Consensus 128 l~~~~~ 133 (253)
T cd06545 128 LKKEGK 133 (253)
T ss_pred HhhcCc
Confidence 988775
No 24
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=73.49 E-value=12 Score=26.84 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhcCCCCEEEEcCCC-----hhHHHHHhhCCCEEEEeecc
Q 039749 22 LPSADQVIALIKSNKINKVRIFQPY-----QGVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 22 ~ps~~~v~~ll~s~~~~~VR~Y~~d-----~~vl~A~~~~gi~v~lGv~~ 66 (321)
.-++++.++..+.+|++.|=+=|-+ +...+.+++.||+++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3468899999999999999887766 45666677899999999864
No 25
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=73.24 E-value=3.5 Score=35.96 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeec
Q 039749 28 VIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 28 v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
-+++|+..|+++||+.+.+|.-+.++.+.||+|.==+|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36889999999999999999999999999999865443
No 26
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=72.74 E-value=44 Score=32.23 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=59.2
Q ss_pred HHHhh--CCCEEEEee--ccc---hhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCC-----CchHHHHHHH
Q 039749 51 QTLKD--SNLEVVLGT--LNE---DLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPG-----QYANFVYDPM 118 (321)
Q Consensus 51 ~A~~~--~gi~v~lGv--~~~---~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~-----~~~~~l~~am 118 (321)
.+++. .++||++.| |.. ....++++++.....+++. ..+...-.+.+|-+==|.... +....++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~i-v~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSA-IAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHH-HHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34454 589998777 332 2344555554444443332 222111123444433232211 1346689999
Q ss_pred HHHHHHHHhC--CCCceEeeeeece--eccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 119 QNVQNALKAA--NVNVPVTTVVSYA--VLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 119 ~~v~~aL~~~--gl~i~VsT~~~~~--~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
+++|++|.+. ++. ++.+.... .+. ..| + +.-|.+..|++.+-.|-|..
T Consensus 141 ~~lr~~l~~~~~~~~--ls~av~~~~~~~~-------~~~--d--------~~~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 141 KELREAFEPEAPRLL--LTAAVSAGKETID-------AAY--D--------IPEISKYLDFINVMTYDFHG 192 (362)
T ss_pred HHHHHHHHhhCcCeE--EEEEecCChHHHh-------hcC--C--------HHHHhhhcceEEEecccCCC
Confidence 9999999987 542 33222111 111 011 1 12256678999999888764
No 27
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=72.73 E-value=42 Score=31.91 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=63.6
Q ss_pred hHHHHHhh--CCCEEE--E--eeccc-hhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccc-cccC----CCchHHHH
Q 039749 48 GVLQTLKD--SNLEVV--L--GTLNE-DLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGN-EVIP----GQYANFVY 115 (321)
Q Consensus 48 ~vl~A~~~--~gi~v~--l--Gv~~~-~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGN-Evl~----~~~~~~l~ 115 (321)
..+.+++. .++||+ + |=|.. ....++++++.-.+++++. ..+...-.+.+|-+=- |... .+....++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~-~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLL-VTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHH-HHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 44455565 579998 4 44543 2455667766555554433 2222212344443321 1110 01345678
Q ss_pred HHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 116 DPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 116 ~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
..|+++|++|.+.|+.+-++.+-.... .+....+.. --+.-|++.+|++.+=.|=|+.
T Consensus 134 ~~l~el~~~l~~~~~~l~~~v~~~~~~-----~~~~~~~~~-------~d~~~l~~~vD~v~lMtYD~~~ 191 (318)
T cd02876 134 QLVIHLGETLHSANLKLILVIPPPREK-----GNQNGLFTR-------KDFEKLAPHVDGFSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHhhcCCEEEEEEcCcccc-----ccccccccc-------cCHHHHHhhccEEEEEeeccCC
Confidence 999999999998886443433211100 000011110 0122366788999998887654
No 28
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=69.36 E-value=17 Score=31.77 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=44.8
Q ss_pred hHHHHHhhC--CCEEEEeeccchhh---HHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCCC---chHHHHHHHH
Q 039749 48 GVLQTLKDS--NLEVVLGTLNEDLQ---QLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQ---YANFVYDPMQ 119 (321)
Q Consensus 48 ~vl~A~~~~--gi~v~lGv~~~~~~---~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~~---~~~~l~~am~ 119 (321)
.-++.+++. |+||++.+...... .++++.+...+.++ ++..+...-.+.+|-+==|..... ....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345666665 99999888753221 23444443333322 222222112344554433433221 2578999999
Q ss_pred HHHHHHHhCCC
Q 039749 120 NVQNALKAANV 130 (321)
Q Consensus 120 ~v~~aL~~~gl 130 (321)
++|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987665
No 29
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=68.57 E-value=13 Score=37.81 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCEEEE-------c--C---CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 25 ADQVIALIKSNKINKVRI-------F--Q---PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~-------Y--~---~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
-+|.++|+++.|++.-|+ + + .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 467789999998877765 2 1 13 3689999999999999997655544
No 30
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=68.41 E-value=20 Score=36.59 Aligned_cols=181 Identities=18% Similarity=0.108 Sum_probs=102.8
Q ss_pred HHHHHHhchhcCCCceEEEEEccccccCC-C-chHHHHHHHHHHHHHHHhCCCC--ceEeeeeeceeccccCCCCCcccc
Q 039749 80 ANWVKDNVLAYIPSVKFRYITLGNEVIPG-Q-YANFVYDPMQNVQNALKAANVN--VPVTTVVSYAVLGSSYPPSNASFG 155 (321)
Q Consensus 80 ~~wv~~~v~~~~~~~~i~~I~VGNEvl~~-~-~~~~l~~am~~v~~aL~~~gl~--i~VsT~~~~~~l~~s~PPs~g~f~ 155 (321)
.+.+..-|.+|.-+..|.+-..-||.+.+ . +...++...+.+.+-++..+-+ |.|+-+.+. |..--|+ .+.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~~~py-N~r~- 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQYAPY-NARF- 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccccCCc-ccce-
Confidence 34566667777556668888889997765 3 8889999999999999887762 444433222 3221122 2222
Q ss_pred cchhHHHhhhHHHHHhcCCcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCC
Q 039749 156 QDSSAAMSKIVPFLQQNQYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGN 235 (321)
Q Consensus 156 ~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~ 235 (321)
++|+-+-|+||+|.. +| |+... .-.+.-|-+.+ ..+ +
T Consensus 199 ----------------~vDya~~hLY~hyd~--sl------~~r~s------~~yg~~~l~i~-----------~~~--g 235 (587)
T COG3934 199 ----------------YVDYAANHLYRHYDT--SL------VSRVS------TVYGKPYLDIP-----------TIM--G 235 (587)
T ss_pred ----------------eeccccchhhhhccC--Ch------hheee------eeecchhhccc-----------hhc--c
Confidence 668889999997762 22 11110 00011011110 112 2
Q ss_pred CceEEEeeccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCCCCC-----CCCcCceeeecC
Q 039749 236 GVKVVVSETGWPSAGADLATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNENQKP-----AGTEQNFGLFYP 310 (321)
Q Consensus 236 ~~~vvI~EtGWPs~G~~~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe~wK~-----~~~E~~wGlf~~ 310 (321)
-+||+.-|-|-|++ ...+|.+.|.-.....+.. .| .+--...|+=|=+--.. ...|-.|||.+.
T Consensus 236 ~~pV~leefGfsta----~g~e~s~ayfiw~~lal~~-gg------dGaLiwclsdf~~gsdd~ey~w~p~el~fgiIra 304 (587)
T COG3934 236 WQPVNLEEFGFSTA----FGQENSPAYFIWIRLALDT-GG------DGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRA 304 (587)
T ss_pred cceeeccccCCccc----ccccccchhhhhhhhHHhh-cC------CceEEEEecCCccCCCCCCCccccccceeeeecC
Confidence 48999999999987 3334444443322222221 11 12334455544422221 346888999999
Q ss_pred CCceeeec
Q 039749 311 DMTPVYPV 318 (321)
Q Consensus 311 d~~~ky~l 318 (321)
|+.+|+..
T Consensus 305 dgpek~~a 312 (587)
T COG3934 305 DGPEKIDA 312 (587)
T ss_pred CCchhhhH
Confidence 99999864
No 31
>PRK09936 hypothetical protein; Provisional
Probab=68.25 E-value=77 Score=30.30 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=71.4
Q ss_pred ceeeEEecCCCCC-CCCHHHHHHH---HhcCCCCEEEE-c----CCC--------hhHHHHHhhCCCEEEEeeccchh--
Q 039749 9 QVIGVNYGLLGNN-LPSADQVIAL---IKSNKINKVRI-F----QPY--------QGVLQTLKDSNLEVVLGTLNEDL-- 69 (321)
Q Consensus 9 ~~~Gi~Yg~~~~~-~ps~~~v~~l---l~s~~~~~VR~-Y----~~d--------~~vl~A~~~~gi~v~lGv~~~~~-- 69 (321)
..-|+=|-+...+ --++++--++ ++..|++.+=+ | +.| ...|+++.+.||+|.||++.|.-
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~ 99 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFF 99 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHH
Confidence 4568889998766 4577776554 46788877544 2 223 36888889999999999997642
Q ss_pred hHHhhcHHHHHHHHHHhchhc---------CCCceEEEEEccccccC-C--C--chHHHHHHHHHHHHHHHhCCCCceEe
Q 039749 70 QQLATDQSFAANWVKDNVLAY---------IPSVKFRYITLGNEVIP-G--Q--YANFVYDPMQNVQNALKAANVNVPVT 135 (321)
Q Consensus 70 ~~~a~~~~~a~~wv~~~v~~~---------~~~~~i~~I~VGNEvl~-~--~--~~~~l~~am~~v~~aL~~~gl~i~Vs 135 (321)
+.+..|..+.+.|++...... .+...+++--.--|.=. . + .-..|+..++++.+.|.+.+-.+-||
T Consensus 100 q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~IS 179 (296)
T PRK09936 100 MHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHIS 179 (296)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 233334334344444322110 12233444443344431 1 2 23456667777766665333234444
Q ss_pred e
Q 039749 136 T 136 (321)
Q Consensus 136 T 136 (321)
+
T Consensus 180 a 180 (296)
T PRK09936 180 A 180 (296)
T ss_pred e
Confidence 3
No 32
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.12 E-value=18 Score=35.54 Aligned_cols=39 Identities=33% Similarity=0.604 Sum_probs=30.1
Q ss_pred HhCCCCceEEEeeccCCCCCCC------CCCHHHHHHHHHHHHHHHhc
Q 039749 231 KVGGNGVKVVVSETGWPSAGAD------LATTNNAKTYVNNVIQRVLT 272 (321)
Q Consensus 231 ~~g~~~~~vvI~EtGWPs~G~~------~as~~na~~y~~~~i~~~~~ 272 (321)
-.|.+..+|+.| |||.|.- ..|...++.-+.++++.+.+
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 456778999988 9999982 46666777778888887765
No 33
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=63.43 E-value=70 Score=31.11 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPC 183 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPy 183 (321)
....+...++.+++.|++..-+.+|+|-.... +.. ..+ .. -+++..|++..|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~-~~~---------~~d-------~~-~~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYDPDHPVTTNFMGS-WFN---------GID-------YF-KWAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT-------------SS--------HH-HHGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeCcccc-ccC---------cCC-------HH-HHHhhCCcceeccccC
Confidence 45678888889999999886567788754222 000 001 11 1466789999999997
No 34
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=62.61 E-value=1.1e+02 Score=30.55 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCcccc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAY 186 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 186 (321)
....++..|+++|++|.+.++.+.++.+-... +...| + +.-|++..|++.+-.|=|+..
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~--------~~~~~--d--------~~~l~~~vD~inlMtYD~~g~ 225 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGLLLTLTVLPHVN--------STWYF--D--------VPAIANNVDFVNLATFDFLTP 225 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCch--------hcccc--C--------HHHHhhcCCEEEEEEecccCC
Confidence 35668889999999998877633222110000 00011 1 223667889999999987653
No 35
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=62.53 E-value=12 Score=33.47 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=30.4
Q ss_pred HHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEE
Q 039749 29 IALIKSNKINKVRIFQPYQGVLQTLKDSNLEVV 61 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~ 61 (321)
+++|+..|+++||+.+.++.-..++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998878889999999997
No 36
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=62.44 E-value=12 Score=33.21 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=30.2
Q ss_pred HHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEE
Q 039749 29 IALIKSNKINKVRIFQPYQGVLQTLKDSNLEVV 61 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~ 61 (321)
+++|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998878889999999986
No 37
>PLN02849 beta-glucosidase
Probab=61.94 E-value=11 Score=38.62 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCEEEE-------cC-----CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 26 DQVIALIKSNKINKVRI-------FQ-----PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~-------Y~-----~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
+|.++||++.|++.-|+ +- .| .+++.+|.+.||+-||.+.=-+++.
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 56788999988877764 31 13 3689999999999999997545543
No 38
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=61.91 E-value=16 Score=36.86 Aligned_cols=108 Identities=11% Similarity=0.201 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCCCEEEEc--CCC-------------h---hHHHHHhhCCC-----EEEEeeccchhhHHhhcHHHHHHH
Q 039749 26 DQVIALIKSNKINKVRIF--QPY-------------Q---GVLQTLKDSNL-----EVVLGTLNEDLQQLATDQSFAANW 82 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y--~~d-------------~---~vl~A~~~~gi-----~v~lGv~~~~~~~~a~~~~~a~~w 82 (321)
++.+++|+..|+++|-+= +.+ . ..++.+++.|+ .+|.|+|.+..+++....+.+...
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 231 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 456777777787765432 112 1 23444555565 468899987777665554443221
Q ss_pred HHHhchhc----CCCceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCC-CceEe
Q 039749 83 VKDNVLAY----IPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANV-NVPVT 135 (321)
Q Consensus 83 v~~~v~~~----~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl-~i~Vs 135 (321)
--+.|.-| .|...-..-.+|.+.++ .....+..++.+.+.|.++|+ .+-++
T Consensus 232 ~p~~i~~y~l~~~p~~~~~~~~~~~~~lp--~~~~~~~~~~~~~~~L~~~Gy~~~~~~ 287 (453)
T PRK13347 232 SPDRIAVFGYAHVPSRRKNQRLIDEAALP--DAEERLRQARAVADRLLAAGYVPIGLD 287 (453)
T ss_pred CCCEEEEeccccccchhhHHhcCCccCCc--CHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 00111111 00000000011222222 345667777888999999998 44433
No 39
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=59.70 E-value=26 Score=35.70 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCEEEE-------cC------CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 25 ADQVIALIKSNKINKVRI-------FQ------PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~-------Y~------~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
-+|.++||+++|++.-|+ += .| .+++..|.+.||+-+|.++--+++.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 467789999988877664 31 23 2689999999999999997655543
No 40
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=57.49 E-value=1.4e+02 Score=30.71 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=51.8
Q ss_pred hCCCEEEEeeccc--------hhh---HHh---hc--HHHHHHHHHHhchhcCC-CceEEEEEccccccC------C-C-
Q 039749 55 DSNLEVVLGTLNE--------DLQ---QLA---TD--QSFAANWVKDNVLAYIP-SVKFRYITLGNEVIP------G-Q- 109 (321)
Q Consensus 55 ~~gi~v~lGv~~~--------~~~---~~a---~~--~~~a~~wv~~~v~~~~~-~~~i~~I~VGNEvl~------~-~- 109 (321)
+.+|+++...|-- ... .+. .+ .++-.+++.+-|+.|.. +..|.+|++.||... . +
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 3579999999831 110 111 01 13334556666777633 467999999999984 1 2
Q ss_pred ---chHHHHHHHHH-HHHHHHhCCC--CceEee
Q 039749 110 ---YANFVYDPMQN-VQNALKAANV--NVPVTT 136 (321)
Q Consensus 110 ---~~~~l~~am~~-v~~aL~~~gl--~i~VsT 136 (321)
++.++...|++ +.-+|+++|+ ++|+-.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 57888888886 9999999988 788754
No 41
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=56.51 E-value=63 Score=30.35 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=57.5
Q ss_pred hCCCEEEEeeccc-----hhhHHhhcHHHHHHH---HHHhchhcCCCceEEEEEccccccCCC----chHHHHHHHHHHH
Q 039749 55 DSNLEVVLGTLNE-----DLQQLATDQSFAANW---VKDNVLAYIPSVKFRYITLGNEVIPGQ----YANFVYDPMQNVQ 122 (321)
Q Consensus 55 ~~gi~v~lGv~~~-----~~~~~a~~~~~a~~w---v~~~v~~~~~~~~i~~I~VGNEvl~~~----~~~~l~~am~~v~ 122 (321)
..|+||++.|-.. ....+..+.+..... +.+-+..| .+.+|-+==|..... ....+...|+.+|
T Consensus 71 ~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y----~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 71 NPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKY----GFDGIDIDWEYPSSSGDPQDKDNYTAFLKELR 146 (343)
T ss_dssp HTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHH----T-SEEEEEESSTTSTSSTTHHHHHHHHHHHHH
T ss_pred ccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhccc----Ccceeeeeeeeccccccchhhhhhhhhhhhhh
Confidence 4699998877543 333444443322222 22234444 355665533443221 5677888999999
Q ss_pred HHHHhC-----CCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 123 NALKAA-----NVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 123 ~aL~~~-----gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
++|++. ++.+ +.+...... + ...+ -+..|.+..|++.+-.|-|..
T Consensus 147 ~~l~~~~~~~~~~~l--s~a~p~~~~----------~----~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 147 KALKRANRSGKGYIL--SVAVPPSPD----------Y----YDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHHHSTSEE--EEEEECSHH----------H----HTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hhhcccccccceeEE--eeccccccc----------c----cccc--ccccccccccccccccccCCC
Confidence 999885 5433 332211000 0 0011 234467788999999887766
No 42
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=55.57 E-value=31 Score=32.75 Aligned_cols=121 Identities=14% Similarity=0.202 Sum_probs=61.5
Q ss_pred HHHHhh--CCCEEEEeecc----chhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCC--CchHHHHHHHHHH
Q 039749 50 LQTLKD--SNLEVVLGTLN----EDLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPG--QYANFVYDPMQNV 121 (321)
Q Consensus 50 l~A~~~--~gi~v~lGv~~----~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~--~~~~~l~~am~~v 121 (321)
+.++++ .++||++.|-. +....++++.+.....++ +|..+...-.+.+|-+==|.... +....++..|+++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 455665 48999997754 233445555443333332 22222211235566554343322 1345688899999
Q ss_pred HHHHHhC---CCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 122 QNALKAA---NVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 122 ~~aL~~~---gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
|++|.+. +-+..++.+. ||...... ..-+.+.-|.+.+|++.+-.|=|..
T Consensus 136 r~~l~~~~~~~~~~~lsi~v---------~~~~~~~~-----~~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 136 REALDKEGAEGKGYLLTIAV---------PAGPDKID-----KGYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHhcccCCceEEEEEe---------cCChHHHH-----hhhhhHHHHHhhCcEEEEeeeccCC
Confidence 9999864 1122233222 11111100 0001023467788999888887664
No 43
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=54.76 E-value=15 Score=36.18 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEE
Q 039749 28 VIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVV 61 (321)
Q Consensus 28 v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~ 61 (321)
-+++|+..|+++||+. .+|.-..++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3789999999999999 78888889999999986
No 44
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=52.50 E-value=22 Score=31.59 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=30.2
Q ss_pred HHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEE
Q 039749 29 IALIKSNKINKVRIFQPYQGVLQTLKDSNLEVV 61 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~ 61 (321)
+++|+..|++++|+.+..+.-+.+|.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998878889999999997
No 45
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=52.43 E-value=39 Score=30.83 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=26.2
Q ss_pred HhCCCCceEEEeeccCCCCCCC------CCCHHHHHHHHHHHHHHHhc
Q 039749 231 KVGGNGVKVVVSETGWPSAGAD------LATTNNAKTYVNNVIQRVLT 272 (321)
Q Consensus 231 ~~g~~~~~vvI~EtGWPs~G~~------~as~~na~~y~~~~i~~~~~ 272 (321)
.+++++.+|+.+ |||.|.. ..+...++..+..+++.+..
T Consensus 44 ~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 44 DLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 466777666665 9999983 24455556666777777654
No 46
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=52.07 E-value=18 Score=35.66 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEE
Q 039749 29 IALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVL 62 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~l 62 (321)
+++|+..|+++||+.. +|.-..+|.+.||+|.=
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~ 360 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTG 360 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEE
Confidence 6899999999999999 89888999999999873
No 47
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=50.84 E-value=44 Score=25.49 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=32.6
Q ss_pred cCCCceEEEEEcccc-ccC-----C----C-chHHHHHHHHHHHHHHHhCCCCceEeee
Q 039749 90 YIPSVKFRYITLGNE-VIP-----G----Q-YANFVYDPMQNVQNALKAANVNVPVTTV 137 (321)
Q Consensus 90 ~~~~~~i~~I~VGNE-vl~-----~----~-~~~~l~~am~~v~~aL~~~gl~i~VsT~ 137 (321)
|.-+.+|.+.=|+|| ... . + ....+.+.|+++-+.+++.+=..|||+.
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 333568999999999 441 1 1 4678999999999999988766777764
No 48
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=50.48 E-value=49 Score=29.61 Aligned_cols=117 Identities=14% Similarity=0.194 Sum_probs=63.4
Q ss_pred HHHHHHHHhchhcCCCceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCC-CceEeeeeeceeccccCCCCCccccc
Q 039749 78 FAANWVKDNVLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANV-NVPVTTVVSYAVLGSSYPPSNASFGQ 156 (321)
Q Consensus 78 ~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl-~i~VsT~~~~~~l~~s~PPs~g~f~~ 156 (321)
...+|+.+.+..+ +...+....+= ....-.+++.+.+.+...|+ .|++.+.... ++|.
T Consensus 56 ~~n~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~------~~~~------ 114 (273)
T PF04909_consen 56 GFNDWLVELAAKH-PDRFIGFAAIP--------PPDPEDAVEELERALQELGFRGVKLHPDLGG------FDPD------ 114 (273)
T ss_dssp HHHHHHHHHHHHS-TTTEEEEEEET--------TTSHHHHHHHHHHHHHTTTESEEEEESSETT------CCTT------
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEec--------CCCchhHHHHHHHhccccceeeeEecCCCCc------cccc------
Confidence 4466666666665 33333322211 11234678888888888888 6776663311 1111
Q ss_pred chhHHH-hhhHHHHHhcCCcceeccC-CcccccCCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCC
Q 039749 157 DSSAAM-SKIVPFLQQNQYPLLANVY-PCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGG 234 (321)
Q Consensus 157 ~~~~~~-~~~l~fL~~~~d~~~vN~y-Pyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~ 234 (321)
.+.. .++++.+.+.+=|+.+|+- +.+.. ......+...+...+++ +
T Consensus 115 --~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~----------------------------~~~~~~~~~~~~~~~~~--~ 162 (273)
T PF04909_consen 115 --DPRLDDPIFEAAEELGLPVLIHTGMTGFPD----------------------------APSDPADPEELEELLER--F 162 (273)
T ss_dssp --SGHCHHHHHHHHHHHT-EEEEEESHTHHHH----------------------------HHHHHHHHHHHTTHHHH--S
T ss_pred --cHHHHHHHHHHHHhhccceeeeccccchhh----------------------------hhHHHHHHHHHHHHHHH--h
Confidence 1122 4888888888877777643 11110 00111122222223343 8
Q ss_pred CCceEEEeeccCC
Q 039749 235 NGVKVVVSETGWP 247 (321)
Q Consensus 235 ~~~~vvI~EtGWP 247 (321)
|+++|++.+.|+|
T Consensus 163 P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 163 PDLRIILAHLGGP 175 (273)
T ss_dssp TTSEEEESGGGTT
T ss_pred cCCeEEEecCccc
Confidence 9999999999999
No 49
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=50.05 E-value=2.1e+02 Score=26.86 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEEcCCC-------hhHHHHHh---hCCCEEEEeeccchhh---HHhhcHHHHHHHHHHh
Q 039749 20 NNLPSADQVIALIKSNKINKVRIFQPY-------QGVLQTLK---DSNLEVVLGTLNEDLQ---QLATDQSFAANWVKDN 86 (321)
Q Consensus 20 ~~~ps~~~v~~ll~s~~~~~VR~Y~~d-------~~vl~A~~---~~gi~v~lGv~~~~~~---~~a~~~~~a~~wv~~~ 86 (321)
-+.+++.++.+.|+..|+++|-+-.+. ..+++.+. ..--++.+|-|.=... +-..+.+.+..-+.+.
T Consensus 55 ~~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~ 134 (262)
T PF06180_consen 55 IKIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEE 134 (262)
T ss_dssp -----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHh
Confidence 357899999999999999999999875 23444433 3345899998852210 0112222222223322
Q ss_pred chhcCCCceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCC-CceEeeeeeceeccccCCCCCcccccchhHHHhhh
Q 039749 87 VLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANV-NVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKI 165 (321)
Q Consensus 87 v~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl-~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~ 165 (321)
+..-.++..+..+-=||+-. +. .+-..++..|++.++ ++-|+|.+ .+| + +..+
T Consensus 135 ~~~~~~~~a~vlmGHGt~h~----an---~~Y~~l~~~l~~~~~~~v~vgtvE-------G~P--------~----~~~v 188 (262)
T PF06180_consen 135 FPKKRKDEAVVLMGHGTPHP----AN---AAYSALQAMLKKHGYPNVFVGTVE-------GYP--------S----LEDV 188 (262)
T ss_dssp S-TT-TTEEEEEEE---SCH----HH---HHHHHHHHHHHCCT-TTEEEEETT-------SSS--------B----HHHH
T ss_pred ccccCCCCEEEEEeCCCCCC----cc---HHHHHHHHHHHhCCCCeEEEEEeC-------CCC--------C----HHHH
Confidence 22111233344444455431 22 233455777888887 79999976 243 1 3455
Q ss_pred HHHHHhcCCcceeccCCccccc
Q 039749 166 VPFLQQNQYPLLANVYPCFAYF 187 (321)
Q Consensus 166 l~fL~~~~d~~~vN~yPyf~~~ 187 (321)
+..|.+.+ +=-|.+.||.--.
T Consensus 189 i~~L~~~g-~k~V~L~PlMlVA 209 (262)
T PF06180_consen 189 IARLKKKG-IKKVHLIPLMLVA 209 (262)
T ss_dssp HHHHHHHT--SEEEEEEESSS-
T ss_pred HHHHHhcC-CCeEEEEeccccc
Confidence 56665543 4458899998643
No 50
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=48.73 E-value=39 Score=34.47 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCEEEE-------cC------CC-------hhHHHHHhhCCCEEEEeeccchhh
Q 039749 25 ADQVIALIKSNKINKVRI-------FQ------PY-------QGVLQTLKDSNLEVVLGTLNEDLQ 70 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~-------Y~------~d-------~~vl~A~~~~gi~v~lGv~~~~~~ 70 (321)
-+|.++||+++|++.-|+ +- .| ..++.+|.+.||+.+|.++=-+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 467789999888776664 31 23 268999999999999999543443
No 51
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=45.30 E-value=58 Score=33.20 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCCEEEE-------cC------CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 26 DQVIALIKSNKINKVRI-------FQ------PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~-------Y~------~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
++.+++|+..|++..|+ +- .| ..++.+|.+.||+.||.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 66788999888777664 31 13 2689999999999999987655544
No 52
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=45.07 E-value=46 Score=34.29 Aligned_cols=79 Identities=14% Similarity=0.302 Sum_probs=51.9
Q ss_pred hCCCCceEEEeeccCCCCCCC----------CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecC-CCCCCC
Q 039749 232 VGGNGVKVVVSETGWPSAGAD----------LATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNE-NQKPAG 300 (321)
Q Consensus 232 ~g~~~~~vvI~EtGWPs~G~~----------~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe-~wK~~~ 300 (321)
-.+.|.+|.|+|-|-+...+. ..=.+..+.|++.+.+.++.. |- +..-+|..++-|- .|. .+
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~d-gv-----nv~GYf~WSLmDnfEw~-~G 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKED-GV-----NVKGYFVWSLLDNFEWL-DG 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhc-CC-----ceeeEEEeEcccchhhh-cC
Confidence 347899999999999987543 122445566666666666531 21 1235888998873 344 47
Q ss_pred CcCceeeecC------CCceeee
Q 039749 301 TEQNFGLFYP------DMTPVYP 317 (321)
Q Consensus 301 ~E~~wGlf~~------d~~~ky~ 317 (321)
..-.||||+- .|.||-+
T Consensus 476 y~~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 476 YKVRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred cccccccEEEeCCCCCcCCchhH
Confidence 7889999984 4566644
No 53
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=44.36 E-value=2.8e+02 Score=26.10 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=53.7
Q ss_pred hHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCC
Q 039749 70 QQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPP 149 (321)
Q Consensus 70 ~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PP 149 (321)
..+.+++..-..++++- ..+...-.+.+|-+==|.+..+....+...|++++.+|++.|+.+.|+.+ |
T Consensus 80 ~~~l~~~~~R~~fi~~i-v~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~v~-----------~ 147 (298)
T cd06549 80 ARLLADPSARAKFIANI-AAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVP-----------A 147 (298)
T ss_pred HHHhcCHHHHHHHHHHH-HHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEEec-----------C
Confidence 45666665555554433 22222224556666556553334566888999999999988763333321 1
Q ss_pred CCcccccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 150 SNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 150 s~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
....| + ++-|.+.+|++.+-.|=|+.
T Consensus 148 ~~~~~--d--------~~~l~~~~D~v~lMtYD~~~ 173 (298)
T cd06549 148 DEADW--N--------LKALARNADKLILMAYDEHY 173 (298)
T ss_pred CCCCC--C--------HHHHHHhCCEEEEEEeccCC
Confidence 11112 1 12366788999888887654
No 54
>PRK08815 GTP cyclohydrolase; Provisional
Probab=44.29 E-value=32 Score=34.05 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=32.3
Q ss_pred HHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeec
Q 039749 29 IALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
+++|+..|+++||+..-++.-+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888899999999974344
No 55
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=44.25 E-value=32 Score=34.17 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=32.9
Q ss_pred HHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeec
Q 039749 29 IALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
+++|+..|+++||+..-+|.-..++.+.||+|.==++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888999999999974444
No 56
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=44.23 E-value=54 Score=26.45 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCEEEEc--CCC---hhHHHHHhhCCCEEEE
Q 039749 26 DQVIALIKSNKINKVRIF--QPY---QGVLQTLKDSNLEVVL 62 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y--~~d---~~vl~A~~~~gi~v~l 62 (321)
+.+.+.++.+|++.|+++ +.. ..+|++|+..|+++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 344566678999998888 443 4799999999998643
No 57
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=43.95 E-value=32 Score=34.98 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCCEEEE-------cC-----CC-------hhHHHHHhhCCCEEEEeeccchhhH
Q 039749 25 ADQVIALIKSNKINKVRI-------FQ-----PY-------QGVLQTLKDSNLEVVLGTLNEDLQQ 71 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~-------Y~-----~d-------~~vl~A~~~~gi~v~lGv~~~~~~~ 71 (321)
-+|.++||+.+|++.-|+ += .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 467788999888777664 31 13 3689999999999999998655554
No 58
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=42.46 E-value=34 Score=33.39 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCEEEEcCCC-hhHHHHHhhCCCEEE
Q 039749 28 VIALIKSNKINKVRIFQPY-QGVLQTLKDSNLEVV 61 (321)
Q Consensus 28 v~~ll~s~~~~~VR~Y~~d-~~vl~A~~~~gi~v~ 61 (321)
..++|+..|+++||+..-+ |.-..++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4689999999999999999 888889999999986
No 59
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.41 E-value=55 Score=27.12 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeec
Q 039749 26 DQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
..+.++|+.+|++.|=+-..-+..+.+|++.||+|+.+..
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999999988889999999999999999987
No 60
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.28 E-value=69 Score=29.06 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=39.8
Q ss_pred EEEEcCCC-----hhHHHHHhhCCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEcccccc
Q 039749 39 KVRIFQPY-----QGVLQTLKDSNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVI 106 (321)
Q Consensus 39 ~VR~Y~~d-----~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl 106 (321)
++++||+- ..+..+....-+.++|..-...-.++ .....|++ +|..+.++ .+..+.|||-.=
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~~-~I~e~a~~-~v~~~LvGNK~D 128 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWIK-NIDEHASD-DVVKILVGNKCD 128 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHHH-HHHhhCCC-CCcEEEeecccc
Confidence 56778773 35666666555566666554434444 34456866 67777654 688999999874
No 61
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=41.74 E-value=36 Score=32.64 Aligned_cols=214 Identities=14% Similarity=0.172 Sum_probs=109.2
Q ss_pred hHHHHHhhCCCEEE--EeeccchhhHHhh------------cHHHHHHHHHHhchhcCCC-ceEEEEEccccccCCC---
Q 039749 48 GVLQTLKDSNLEVV--LGTLNEDLQQLAT------------DQSFAANWVKDNVLAYIPS-VKFRYITLGNEVIPGQ--- 109 (321)
Q Consensus 48 ~vl~A~~~~gi~v~--lGv~~~~~~~~a~------------~~~~a~~wv~~~v~~~~~~-~~i~~I~VGNEvl~~~--- 109 (321)
.++.-++..||+|- .=||-...+.... -.+...++|++.+..| .+ .+|...=|=||++..+
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 57777888999874 3344333222111 1345566777766666 43 4799998889999641
Q ss_pred ------c------hHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCc--
Q 039749 110 ------Y------ANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYP-- 175 (321)
Q Consensus 110 ------~------~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~-- 175 (321)
. ...+..+.+-.|++...+. .---+ .+++ .+.-+..+..+++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~----L~~ND-y~~~-----------~~~k~~~~~~lv~~l~~~gvpId 205 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPNAK----LFYND-YNIE-----------SPAKRDAYLNLVKDLKARGVPID 205 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSE----EEEEE-SSTT-----------STHHHHHHHHHHHHHHHTTHCS-
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCCcE----EEecc-cccc-----------chHHHHHHHHHHHHHHhCCCccc
Confidence 1 2345556666666665322 22111 1111 111123456677777766533
Q ss_pred -ceeccCCcccccCCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCCceEEEeeccCCCCCCC--
Q 039749 176 -LLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETGWPSAGAD-- 252 (321)
Q Consensus 176 -~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtGWPs~G~~-- 252 (321)
+++-.| |. ... . .+.+..+|++..--+++|.|||--=......
T Consensus 206 gIG~Q~H--~~----------------------~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 206 GIGLQSH--FD----------------------AGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD 251 (320)
T ss_dssp EEEEEEE--EE----------------------TTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC
T ss_pred eechhhc--cC----------------------CCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc
Confidence 222222 11 000 0 2333444555544569999999643332221
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEEEeecCC-CCCCCCcCceeeecCCCceeee
Q 039749 253 LATTNNAKTYVNNVIQRVLTGKGTPKRPETPLEAYIFALFNEN-QKPAGTEQNFGLFYPDMTPVYP 317 (321)
Q Consensus 253 ~as~~na~~y~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fDe~-wK~~~~E~~wGlf~~d~~~ky~ 317 (321)
....+.|+.+++.+++.+.+. | +..-..+.+-.+.|.. |.....-.+=+||+.|.+||-.
T Consensus 252 ~~~~~~qA~~~~~~~~~~~~~---~--~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 252 AEEEEAQAEYYRDFLTACFSH---P--PAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPA 312 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---T--HCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HH
T ss_pred hHHHHHHHHHHHHHHHHHHhC---C--ccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHH
Confidence 345777889999999988762 1 0112234444555533 5541112345799999999854
No 62
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.67 E-value=36 Score=33.95 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeec
Q 039749 28 VIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 28 v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
..++|+..|+++||+..-+|.-..++.+.||+|.==++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 47899999999999999999888899999999973333
No 63
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=40.76 E-value=38 Score=35.19 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=33.3
Q ss_pred HHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeec
Q 039749 28 VIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 28 v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
.+++|+..|+++||+..-+|.-+.++++.||+|.==++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999999999999999874444
No 64
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=40.12 E-value=3.8e+02 Score=26.42 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCcccc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAY 186 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 186 (321)
+..+...+++.+|+.. . .+.+++..-. .+| |. -...+...++|+.+. .+-.+++|||--.
T Consensus 271 ~~~~~~~~v~~l~~~~--~--gi~i~~~~Iv-----G~P---gE----T~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVR--P--DYAFGTDIIV-----GFP---GE----SEEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred CHHHHHHHHHHHHHhC--C--CCeeeeeEEE-----ECC---CC----CHHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 5667777777777642 2 3555554322 244 21 123466778887654 3556777776543
No 65
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=40.06 E-value=39 Score=34.28 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeec
Q 039749 28 VIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 28 v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
-.++|+..|+++||+..-+|.-+.++.+.||+|.==++
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36899999999999999999888999999999973343
No 66
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.87 E-value=2.6e+02 Score=24.81 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCEEEEcCCC---------hhHHHHHhhCCCEEEE--eeccchhhHHhhcHHHHHHHHHHhchhcCCC
Q 039749 25 ADQVIALIKSNKINKVRIFQPY---------QGVLQTLKDSNLEVVL--GTLNEDLQQLATDQSFAANWVKDNVLAYIPS 93 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~Y~~d---------~~vl~A~~~~gi~v~l--Gv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 93 (321)
-..+++.|.++|.++|=+.+.. .....+++..|+++.. ..+.....+.....+.+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 3445666666677777665432 1234566678877621 111111111112234455555432 1
Q ss_pred ceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCC----CceEeeeeeceeccccCCCCCcccccc
Q 039749 94 VKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANV----NVPVTTVVSYAVLGSSYPPSNASFGQD 157 (321)
Q Consensus 94 ~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl----~i~VsT~~~~~~l~~s~PPs~g~f~~~ 157 (321)
.+++|.+.|+.+. . .+.++|++.|+ ++.|.+-+....+..-..|...+...+
T Consensus 171 -~~~ai~~~~d~~a-------~----g~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~ 226 (265)
T cd01543 171 -KPVGIFACTDARA-------R----QLLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQN 226 (265)
T ss_pred -CCcEEEecChHHH-------H----HHHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecC
Confidence 3567777776642 2 23345566676 456655554332222123444444444
No 67
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=39.68 E-value=70 Score=26.72 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCCCCEEEEcCC---------------------C--hhHHHHHhhCCCEEEEeecc
Q 039749 24 SADQVIALIKSNKINKVRIFQP---------------------Y--QGVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 24 s~~~v~~ll~s~~~~~VR~Y~~---------------------d--~~vl~A~~~~gi~v~lGv~~ 66 (321)
+|++.++.|+..+++.|-+|.- | .++++|+++.||+|++=+--
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 4688899999888888888642 1 36788999999998876653
No 68
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=35.74 E-value=2.4e+02 Score=22.83 Aligned_cols=108 Identities=16% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHhcCCCCEEEEcCCC----------hhHHHHHhhCCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhcCCCceEEEE
Q 039749 30 ALIKSNKINKVRIFQPY----------QGVLQTLKDSNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAYIPSVKFRYI 99 (321)
Q Consensus 30 ~ll~s~~~~~VR~Y~~d----------~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I 99 (321)
+-|.++|.++|-+.... .....++++.|++...-.......... .......|+++. .| ++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----dai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cEE
Confidence 34556778888877633 135677888999754333222111111 111222366433 23 388
Q ss_pred EccccccCCCchHHHHHHHHHHHHHHHhCCC----CceEeeeeeceeccccCCCCCcccccch
Q 039749 100 TLGNEVIPGQYANFVYDPMQNVQNALKAANV----NVPVTTVVSYAVLGSSYPPSNASFGQDS 158 (321)
Q Consensus 100 ~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl----~i~VsT~~~~~~l~~s~PPs~g~f~~~~ 158 (321)
+++|+.+. ..+..+|.+.|+ ++.|-+-+........+ |...++..+.
T Consensus 73 i~~~~~~a-----------~~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~~~~ 123 (160)
T PF13377_consen 73 ICSNDRLA-----------LGVLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTIDQDP 123 (160)
T ss_dssp EESSHHHH-----------HHHHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEEE-H
T ss_pred EEcCHHHH-----------HHHHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceecCCH
Confidence 88887652 234466777787 46666655443332223 4455555444
No 69
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=35.63 E-value=1.9e+02 Score=27.35 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCC-CceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCcccccCCCCcc
Q 039749 115 YDPMQNVQNALKAANV-NVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAYFGEPTTI 193 (321)
Q Consensus 115 ~~am~~v~~aL~~~gl-~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~~~p~~i 193 (321)
-.+..+++...++.|. .+++...... +.|+ .+.+.|+..++.+.+-|+.++.=+.....
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~------~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~------ 171 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQG------FYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGA------ 171 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccC------CCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCc------
Confidence 3466777788887777 5665433211 1222 13467888999999999999654433221
Q ss_pred CccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCCceEEEeecc--CCCCCC
Q 039749 194 DADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETG--WPSAGA 251 (321)
Q Consensus 194 ~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtG--WPs~G~ 251 (321)
.++... .+- .++|-+ .. -+|+++||+++.| +|..-.
T Consensus 172 ~~~~~~---------------~~p--~~~~~v---a~--~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 172 GLEKGH---------------SDP--LYLDDV---AR--KFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred ccccCC---------------CCc--hHHHHH---HH--HCCCCcEEEEecCCCCchhHH
Confidence 111000 000 022322 12 3899999999999 887644
No 70
>PHA02754 hypothetical protein; Provisional
Probab=35.39 E-value=39 Score=24.39 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhCCC---CceEeee
Q 039749 113 FVYDPMQNVQNALKAANV---NVPVTTV 137 (321)
Q Consensus 113 ~l~~am~~v~~aL~~~gl---~i~VsT~ 137 (321)
..-.+|+++|..|.++|+ +|++-|.
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 456799999999999997 6776554
No 71
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.38 E-value=96 Score=28.51 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=38.9
Q ss_pred cceeeEEecCCCCCCC----CHHHHHHHHhcCCCCEEEEcCCC--------hhHHHHHhhCCCEE
Q 039749 8 AQVIGVNYGLLGNNLP----SADQVIALIKSNKINKVRIFQPY--------QGVLQTLKDSNLEV 60 (321)
Q Consensus 8 ~~~~Gi~Yg~~~~~~p----s~~~v~~ll~s~~~~~VR~Y~~d--------~~vl~A~~~~gi~v 60 (321)
.+.+=|+-|+..+..+ +-+..+.+|+..|.+.|+.|-.. ..|-+|+++.|+.+
T Consensus 116 ~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~l 180 (236)
T TIGR03581 116 PGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYL 180 (236)
T ss_pred cceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCcc
Confidence 4555666777655543 34667889999999999999764 35778888898853
No 72
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=35.25 E-value=84 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCEEEEc--C--------CC---hhHHHHHhhCCCEEE
Q 039749 26 DQVIALIKSNKINKVRIF--Q--------PY---QGVLQTLKDSNLEVV 61 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y--~--------~d---~~vl~A~~~~gi~v~ 61 (321)
+++.+.++.+|++.|+++ + +. ..+|++|+..||++.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445666778899988777 3 33 478999999999974
No 73
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=35.03 E-value=1.1e+02 Score=30.59 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=53.6
Q ss_pred ChhHHHHHhhCCCEEEEeeccch--hhH--------HhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCCCchHHHH
Q 039749 46 YQGVLQTLKDSNLEVVLGTLNED--LQQ--------LATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPGQYANFVY 115 (321)
Q Consensus 46 d~~vl~A~~~~gi~v~lGv~~~~--~~~--------~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~~~~~~l~ 115 (321)
+..+++..+..+++.++++-|.. ... +-.++.+-.+ +.+++..-....-++++.++=|.+....-+..-
T Consensus 149 ~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~-~i~~ii~~l~~~Gyrgv~iDfE~v~~~DR~~yt 227 (423)
T COG3858 149 NENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNR-LINNIITLLDARGYRGVNIDFENVGPGDRELYT 227 (423)
T ss_pred CcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHH-HHHHHHHHHHhcCcccEEechhhCCHHHHHHHH
Confidence 35788888889999999998865 221 1122221112 122221111223577888888877543445667
Q ss_pred HHHHHHHHHHHhCCCCc
Q 039749 116 DPMQNVQNALKAANVNV 132 (321)
Q Consensus 116 ~am~~v~~aL~~~gl~i 132 (321)
..|+.++.+|.+.|+.+
T Consensus 228 ~flR~~r~~l~~~G~~~ 244 (423)
T COG3858 228 DFLRQVRDALHSGGYTV 244 (423)
T ss_pred HHHHHHHHHhccCCeEE
Confidence 78999999999998633
No 74
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=34.86 E-value=3.2e+02 Score=25.71 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhHHHHHhh--CCCEEEEee--ccch---hhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCC-CchHHHHHHH
Q 039749 47 QGVLQTLKD--SNLEVVLGT--LNED---LQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPG-QYANFVYDPM 118 (321)
Q Consensus 47 ~~vl~A~~~--~gi~v~lGv--~~~~---~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~-~~~~~l~~am 118 (321)
....+.+++ .++|+++.| |..+ ...+++++......++ ++..+...-.+.+|-+==|-... +....++..|
T Consensus 54 ~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~-siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll 132 (299)
T cd02879 54 STFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFIN-SSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLL 132 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHH-HHHHHHHHhCCCceeecccCCCChhHHHHHHHHH
Q ss_pred HHHHHHHH-------hCCCCceEeeeeecee----ccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccccc
Q 039749 119 QNVQNALK-------AANVNVPVTTVVSYAV----LGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAYF 187 (321)
Q Consensus 119 ~~v~~aL~-------~~gl~i~VsT~~~~~~----l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~ 187 (321)
+++|++|. ..++-+.+..+-.... ....|+ +.-|++.+|++.+=.|=|+..-
T Consensus 133 ~elr~~l~~~~~~~~~~~~~ls~av~~~~~~~~~~~~~~yd-----------------~~~l~~~vD~i~vMtYD~~g~~ 195 (299)
T cd02879 133 EEWRAAVKDEARSSGRPPLLLTAAVYFSPILFLSDDSVSYP-----------------IEAINKNLDWVNVMAYDYYGSW 195 (299)
T ss_pred HHHHHHHHHHhhccCCCcEEEEeecccchhhccccccccCC-----------------HHHHHhhCCEEEEEeecccCCC
Q ss_pred CCCCccCccccccCCCCccccCCccchHHHHHH----HHHHHHHHHHHhCCCCceEEEe
Q 039749 188 GEPTTIDADYALGNPNASFVYDGTLSYNNMFDA----MIDAMYVALEKVGGNGVKVVVS 242 (321)
Q Consensus 188 ~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da----~~da~~~al~~~g~~~~~vvI~ 242 (321)
.. .....-..+++. .+|.......+.|.|..+|+++
T Consensus 196 ~~-------------------~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlG 235 (299)
T cd02879 196 ES-------------------NTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLG 235 (299)
T ss_pred CC-------------------CCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEE
No 75
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=34.84 E-value=77 Score=25.55 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCEEEEc--CCC---hhHHHHHhhCCCEEEE
Q 039749 27 QVIALIKSNKINKVRIF--QPY---QGVLQTLKDSNLEVVL 62 (321)
Q Consensus 27 ~v~~ll~s~~~~~VR~Y--~~d---~~vl~A~~~~gi~v~l 62 (321)
.+.+.++..|++.|+++ +.. ..++++|+.+|+++..
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34556677899988888 443 4789999999998654
No 76
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.45 E-value=3.5e+02 Score=26.22 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=38.4
Q ss_pred cceeeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeecc
Q 039749 8 AQVIGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 8 ~~~~Gi~Yg~~~~~~ps~~~v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~~ 66 (321)
...+|||.-...++ |..++.++.+...+.+.|=+..-+|...+.+++.|++|+.-|+.
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 44678887443322 33455566666666777766655565578889999999988874
No 77
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=33.24 E-value=1.3e+02 Score=28.23 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=34.7
Q ss_pred eEEEEEccccccCC---C-chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHH
Q 039749 95 KFRYITLGNEVIPG---Q-YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQ 170 (321)
Q Consensus 95 ~i~~I~VGNEvl~~---~-~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~ 170 (321)
....|+||+|+|.+ | .++.| -+.|...|+++.=.|.. .+ + -..|...++.+.
T Consensus 3 ~a~iI~vG~ElL~G~ivdtNa~~l-------a~~L~~~G~~v~~~~~V-----gD-----------~-~~~I~~~l~~a~ 58 (255)
T COG1058 3 KAEIIAVGDELLSGRIVDTNAAFL-------ADELTELGVDLARITTV-----GD-----------N-PDRIVEALREAS 58 (255)
T ss_pred eEEEEEEccceecCceecchHHHH-------HHHHHhcCceEEEEEec-----CC-----------C-HHHHHHHHHHHH
Confidence 35679999999987 3 33333 34577778754433222 11 1 134556666666
Q ss_pred hcCCccee
Q 039749 171 QNQYPLLA 178 (321)
Q Consensus 171 ~~~d~~~v 178 (321)
+..|++.+
T Consensus 59 ~r~D~vI~ 66 (255)
T COG1058 59 ERADVVIT 66 (255)
T ss_pred hCCCEEEE
Confidence 66777644
No 78
>PRK07198 hypothetical protein; Validated
Probab=32.69 E-value=38 Score=33.77 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=32.3
Q ss_pred HHHHhcCCCCEE-EEcCCChhHHHHHhhCCCEEEEeec
Q 039749 29 IALIKSNKINKV-RIFQPYQGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 29 ~~ll~s~~~~~V-R~Y~~d~~vl~A~~~~gi~v~lGv~ 65 (321)
.++|+.+|+++| |+.+.++.-+.+|.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 678899999999 9999999888899999999974444
No 79
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=32.64 E-value=3.7e+02 Score=24.19 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=64.2
Q ss_pred CCHHHHHHHHhcCCCCEEEEcCCC-----------hhHHHHHhhCCCEEEEeeccch-----hhHHhhcHHHHHHHHHHh
Q 039749 23 PSADQVIALIKSNKINKVRIFQPY-----------QGVLQTLKDSNLEVVLGTLNED-----LQQLATDQSFAANWVKDN 86 (321)
Q Consensus 23 ps~~~v~~ll~s~~~~~VR~Y~~d-----------~~vl~A~~~~gi~v~lGv~~~~-----~~~~a~~~~~a~~wv~~~ 86 (321)
|++ ...+.+++.|.+.|=.|-++ +.=++.+...|++++. |+... ....+.....|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 455 55667788888877667332 2346778889998764 23211 111122233343334434
Q ss_pred chhcCCCceEEEEEccccccCCCchHHHHHHHHHHHHHHHhCCC
Q 039749 87 VLAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQNALKAANV 130 (321)
Q Consensus 87 v~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl 130 (321)
..--.|...+.++.|=......+....++|+++-+.++|...||
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~~~~~~v~~Y~~a~~~~l~~~gY 142 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDDEVTEVILPYFRGWNDALHEAGY 142 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 33234655566777765543223457999999999999999887
No 80
>CHL00041 rps11 ribosomal protein S11
Probab=32.53 E-value=1.1e+02 Score=25.11 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCEEEEc--CCC---hhHHHHHhhCCCEEE
Q 039749 27 QVIALIKSNKINKVRIF--QPY---QGVLQTLKDSNLEVV 61 (321)
Q Consensus 27 ~v~~ll~s~~~~~VR~Y--~~d---~~vl~A~~~~gi~v~ 61 (321)
.+.+.++..|++.|+++ +.. ..++++|+..|+++.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34556677899988887 333 478999999999864
No 81
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=31.26 E-value=83 Score=31.10 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCEEEEc--CCC-------------hh---HHHHHhhCCC-----EEEEeeccchhhHHhhcHHHHHHHH
Q 039749 27 QVIALIKSNKINKVRIF--QPY-------------QG---VLQTLKDSNL-----EVVLGTLNEDLQQLATDQSFAANWV 83 (321)
Q Consensus 27 ~v~~ll~s~~~~~VR~Y--~~d-------------~~---vl~A~~~~gi-----~v~lGv~~~~~~~~a~~~~~a~~wv 83 (321)
+.++.|+..|+++|-+= +.| .+ .+..+++.|+ .+|.|+|.+..+++..+.+.+.+.-
T Consensus 116 e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~ 195 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALN 195 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCC
Confidence 45677777788765331 222 12 3334455555 4688999877776655554443211
Q ss_pred HHhchhc----CCCceEEE-EEccccccCCCchHHHHHHHHHHHHHHHhCCC-CceEe
Q 039749 84 KDNVLAY----IPSVKFRY-ITLGNEVIPGQYANFVYDPMQNVQNALKAANV-NVPVT 135 (321)
Q Consensus 84 ~~~v~~~----~~~~~i~~-I~VGNEvl~~~~~~~l~~am~~v~~aL~~~gl-~i~Vs 135 (321)
-++|.-| .|++.+.. +.-|...+. +..........++..|.++|+ +.-++
T Consensus 196 p~~is~y~L~~~pgT~l~~~~~~g~~~~~--~~~~~~~~~~~~~~~L~~~Gy~~yeis 251 (400)
T PRK07379 196 PTHLSCYDLVLEPGTAFGKQYQPGKAPLP--SDETTAAMYRLAQEILTQAGYEHYEIS 251 (400)
T ss_pred CCEEEEecceecCCchhHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHcCCceeeee
Confidence 1111111 01111100 000111111 234445556678899999999 55444
No 82
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=31.06 E-value=1.1e+02 Score=25.83 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCEEEEc--C--------CC---hhHHHHHhhCCCEEE
Q 039749 26 DQVIALIKSNKINKVRIF--Q--------PY---QGVLQTLKDSNLEVV 61 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y--~--------~d---~~vl~A~~~~gi~v~ 61 (321)
+++.+.++.+|++.|+++ + +. ..+|++|+..||++.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 445667778999988887 4 33 378999999999964
No 83
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=30.98 E-value=3.1e+02 Score=23.68 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=40.5
Q ss_pred hHHHHHhhCCCEEEEeeccchh----hHHhhcHHHHHHHHHHhc-hhcCCCceEEEEEccccccCCCchHHHHHHHHHHH
Q 039749 48 GVLQTLKDSNLEVVLGTLNEDL----QQLATDQSFAANWVKDNV-LAYIPSVKFRYITLGNEVIPGQYANFVYDPMQNVQ 122 (321)
Q Consensus 48 ~vl~A~~~~gi~v~lGv~~~~~----~~~a~~~~~a~~wv~~~v-~~~~~~~~i~~I~VGNEvl~~~~~~~l~~am~~v~ 122 (321)
.+|+++.+.||+|++|++.+.. .+.+........ +.+.+ +.|.....+.+--+-.|.-... -...++.+.+.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~-v~~el~~~yg~h~sf~GWYip~E~~~~~--~~~~~~~~~l~ 145 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ-VADELWQRYGHHPSFYGWYIPYEIDDYN--WNAPERFALLG 145 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH-HHHHHHHHHcCCCCCceEEEecccCCcc--cchHHHHHHHH
Confidence 5788999999999999985411 111111011111 22222 2342223577777777875431 22345555555
Q ss_pred HHHHhC
Q 039749 123 NALKAA 128 (321)
Q Consensus 123 ~aL~~~ 128 (321)
+.|+..
T Consensus 146 ~~lk~~ 151 (166)
T PF14488_consen 146 KYLKQI 151 (166)
T ss_pred HHHHHh
Confidence 555543
No 84
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.94 E-value=5.8e+02 Score=25.87 Aligned_cols=127 Identities=10% Similarity=0.189 Sum_probs=69.4
Q ss_pred eeeEEecCCCCCCC----CHHHHHHHH-hcCCCCEEEEcCCCh-----hHHHHHhhC-CCEEEEeeccchhhHHhhcHHH
Q 039749 10 VIGVNYGLLGNNLP----SADQVIALI-KSNKINKVRIFQPYQ-----GVLQTLKDS-NLEVVLGTLNEDLQQLATDQSF 78 (321)
Q Consensus 10 ~~Gi~Yg~~~~~~p----s~~~v~~ll-~s~~~~~VR~Y~~d~-----~vl~A~~~~-gi~v~lGv~~~~~~~~a~~~~~ 78 (321)
-+|.|=+.||.+++ +-.+.++.+ +-.|+.+||+=..+| +++++++.+ .+-=.+-+|. ++-
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPv---QsG------ 265 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPV---QSG------ 265 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCcc---ccC------
Confidence 35677777776664 234444433 335678888876653 566666653 3322333331 111
Q ss_pred HHHHHHHhchhcCCCceEEEEEcccccc---CCC-chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCccc
Q 039749 79 AANWVKDNVLAYIPSVKFRYITLGNEVI---PGQ-YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASF 154 (321)
Q Consensus 79 a~~wv~~~v~~~~~~~~i~~I~VGNEvl---~~~-~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f 154 (321)
-|++| .|. +....+..++.+|+++. .+-++|.. +. .|| |.-
T Consensus 266 -----------------------sd~ILk~M~R~yt~e~~~~~i~k~R~~~P----d~~i~tDi----IV-GFP---gET 310 (437)
T COG0621 266 -----------------------SDRILKRMKRGYTVEEYLEIIEKLRAARP----DIAISTDI----IV-GFP---GET 310 (437)
T ss_pred -----------------------CHHHHHHhCCCcCHHHHHHHHHHHHHhCC----CceEeccE----EE-ECC---CCC
Confidence 01112 222 67778888888888776 35566644 22 266 433
Q ss_pred ccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 155 GQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 155 ~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
.++. ...++|+ +..-|=.+|+++|=.
T Consensus 311 eedF----e~tl~lv-~e~~fd~~~~F~YSp 336 (437)
T COG0621 311 EEDF----EETLDLV-EEVRFDRLHVFKYSP 336 (437)
T ss_pred HHHH----HHHHHHH-HHhCCCEEeeeecCC
Confidence 3332 3445544 455788889998743
No 85
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=30.50 E-value=1.1e+02 Score=25.25 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHhcCCCCEEEEcCCC-----hhHHHHHhhCCCEEEEeecc
Q 039749 21 NLPSADQVIALIKSNKINKVRIFQPY-----QGVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 21 ~~ps~~~v~~ll~s~~~~~VR~Y~~d-----~~vl~A~~~~gi~v~lGv~~ 66 (321)
-..+++++++..+..|++.|=+=|-+ +.-.+.++..||++++|+-.
T Consensus 14 g~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 14 GKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 34489999999999999988877654 35566677799999999975
No 86
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=30.48 E-value=94 Score=27.89 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeeccc
Q 039749 29 IALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNE 67 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~~~ 67 (321)
+++|+-.|+++||+-..+|.=..++.+.||+|.=-+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578899999999999999988899999999998888754
No 87
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=30.47 E-value=2.1e+02 Score=25.64 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCceEEEeec---cCCCCCCCCCCHHHHHHHHHHHHHHHhcC-CCCCCCCCCCccEEEEEeecCCCCC
Q 039749 223 DAMYVALEKVGGNGVKVVVSET---GWPSAGADLATTNNAKTYVNNVIQRVLTG-KGTPKRPETPLEAYIFALFNENQKP 298 (321)
Q Consensus 223 da~~~al~~~g~~~~~vvI~Et---GWPs~G~~~as~~na~~y~~~~i~~~~~~-~gtp~rpg~~~~~y~F~~fDe~wK~ 298 (321)
|.+..++.+. ++.|+|.=- ||...++...+....+.++..+.+.+.+. ++ .-.+..|+++||+--.
T Consensus 65 d~~v~~a~~~---gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 65 DRIVDAAQAY---GIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHT---T-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCST
T ss_pred HHHHHHHHhC---CCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCcccc
Confidence 3333344554 467777543 48655555556555555555544443220 11 1236689999998653
No 88
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.04 E-value=4e+02 Score=26.30 Aligned_cols=133 Identities=12% Similarity=0.220 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCccc--ccchhHHHhhhHHHHHhcCCcceeccCCccccc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASF--GQDSSAAMSKIVPFLQQNQYPLLANVYPCFAYF 187 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f--~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~ 187 (321)
+..++...+++.|+. +||++.-..-.-+...+ +.| .++.-+-++.+++.|.+.+=-++++++|+....
T Consensus 41 ~~~~v~~~i~~~~~~------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHT------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHc------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 345555556555553 47777655433333322 233 232335578899999999999999999987642
Q ss_pred CCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCC----CCceEEEeeccCCCCCC-CCCCHHHHHHH
Q 039749 188 GEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGG----NGVKVVVSETGWPSAGA-DLATTNNAKTY 262 (321)
Q Consensus 188 ~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~----~~~~vvI~EtGWPs~G~-~~as~~na~~y 262 (321)
.. .| ..++... +.|+ ++-...+++. ||-.+. ..-+-.+++.+
T Consensus 111 ~~-----------------------~~-~~~~~~~--------~~~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~~w 157 (441)
T PF01055_consen 111 SP-----------------------DY-ENYDEAK--------EKGYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEARDW 157 (441)
T ss_dssp TT-----------------------B--HHHHHHH--------HTT-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHHHH
T ss_pred CC-----------------------cc-hhhhhHh--------hcCceeecccCCcccccc-cCCcccccCCCChhHHHH
Confidence 11 11 1222211 1221 2235567777 884433 24555568888
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccEEEEEeec
Q 039749 263 VNNVIQRVLTGKGTPKRPETPLEAYIFALFN 293 (321)
Q Consensus 263 ~~~~i~~~~~~~gtp~rpg~~~~~y~F~~fD 293 (321)
+++.++.+.+. .+++.++..+=+
T Consensus 158 ~~~~~~~~~~~--------~Gvdg~w~D~~E 180 (441)
T PF01055_consen 158 WKEQLKELLDD--------YGVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHTT--------ST-SEEEEESTT
T ss_pred HHHHHHHHHhc--------cCCceEEeecCC
Confidence 88777777651 258998887633
No 89
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=30.02 E-value=1.2e+02 Score=22.22 Aligned_cols=40 Identities=10% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhchhcCCCceEEEEEccccccCC---C--chHHHHHHHHHHHHHHHh
Q 039749 76 QSFAANWVKDNVLAYIPSVKFRYITLGNEVIPG---Q--YANFVYDPMQNVQNALKA 127 (321)
Q Consensus 76 ~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~---~--~~~~l~~am~~v~~aL~~ 127 (321)
.+....|+++||.- |++.++. + ....|+|+++..++.++.
T Consensus 10 L~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 10 LEILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 35567899988742 4555554 2 467899999999988864
No 90
>PRK05309 30S ribosomal protein S11; Validated
Probab=29.94 E-value=1.2e+02 Score=25.21 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCEEEEc--CCC---hhHHHHHhhCCCEEE
Q 039749 26 DQVIALIKSNKINKVRIF--QPY---QGVLQTLKDSNLEVV 61 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y--~~d---~~vl~A~~~~gi~v~ 61 (321)
+.+.+.++.+|++.|+++ +.. ..+|.+|...|+++.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 334566678899999998 343 478999999999864
No 91
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=29.57 E-value=47 Score=32.35 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCEEEEcCCChhHHHHHhhCCC
Q 039749 26 DQVIALIKSNKINKVRIFQPYQGVLQTLKDSNL 58 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi 58 (321)
+-|+.+|-..|+.+||+-|.|+-.|..+-.+.+
T Consensus 87 Swv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~ 119 (430)
T KOG2018|consen 87 SWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSC 119 (430)
T ss_pred HHHHHHHHHhcCceEEEechhhccHhhhhhhhh
Confidence 567888878889999999999877776665544
No 92
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=29.47 E-value=81 Score=30.09 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=54.8
Q ss_pred ceEEEEEccccccC----CC------chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCc----ccccchh
Q 039749 94 VKFRYITLGNEVIP----GQ------YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNA----SFGQDSS 159 (321)
Q Consensus 94 ~~i~~I~VGNEvl~----~~------~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g----~f~~~~~ 159 (321)
..|...+||.|-.- |+ .+..|...+.+||+.| |-.+|||-+-.|+-+.. |-|..| .|.
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G~~~kitYAADWsEY~~-~~p~dg~gd~~f~---- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---GPGTKITYAADWSEYFG-YQPADGSGDVYFH---- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---CCCceEEEeccCHHhcC-cCCCCCCCccccc----
Confidence 46889999999752 21 3567888888888887 33589999988887754 555555 443
Q ss_pred HHHhhhHHHHHhcCCcceeccCCcccc
Q 039749 160 AAMSKIVPFLQQNQYPLLANVYPCFAY 186 (321)
Q Consensus 160 ~~~~~~l~fL~~~~d~~~vN~yPyf~~ 186 (321)
|.|+. -....|+++|+-|.=.+-
T Consensus 90 --LDpLW--a~~~IDfIGID~Y~PLSD 112 (299)
T PF13547_consen 90 --LDPLW--ADPNIDFIGIDNYFPLSD 112 (299)
T ss_pred --Ccccc--cCCcCCEEEeecccccCC
Confidence 22332 234679999998865443
No 93
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.14 E-value=2.1e+02 Score=23.40 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEEcCCC----------hhHHHHHhhCCCEEEEeecc
Q 039749 19 GNNLPSADQVIALIKSNKINKVRIFQPY----------QGVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 19 ~~~~ps~~~v~~ll~s~~~~~VR~Y~~d----------~~vl~A~~~~gi~v~lGv~~ 66 (321)
+-..|++++.++-|...|+++|.+-..- +..+..++...+++.+|-|.
T Consensus 52 ~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pL 109 (127)
T cd03412 52 GIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPL 109 (127)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCC
Confidence 3457999999998888999999987552 35566666567789999884
No 94
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.08 E-value=97 Score=31.16 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHHHHHHH----hcCCCCEEEEcCC--C----hhHHHHHhhCCCEEEEeec
Q 039749 25 ADQVIALI----KSNKINKVRIFQP--Y----QGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 25 ~~~v~~ll----~s~~~~~VR~Y~~--d----~~vl~A~~~~gi~v~lGv~ 65 (321)
+++|++.. ..+|++.+|+||+ | ...+++++++|..+-..+-
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE
Confidence 46666533 3689999999998 4 3578888899997766654
No 95
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.57 E-value=4.4e+02 Score=23.78 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=36.0
Q ss_pred eEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCC---C-hhHHHHHhhCCCEEEE
Q 039749 12 GVNYGLLGNNLPSADQVIALIKSNKINKVRIFQP---Y-QGVLQTLKDSNLEVVL 62 (321)
Q Consensus 12 Gi~Yg~~~~~~ps~~~v~~ll~s~~~~~VR~Y~~---d-~~vl~A~~~~gi~v~l 62 (321)
.+|.+..-..+ +.++.++.++..|++.|-+... + ..+.+.++.+||++..
T Consensus 5 ~~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 5 SANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 34444433344 4678888899999999998764 3 3677788899999874
No 96
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=28.39 E-value=2e+02 Score=27.35 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHhh--CCCEEEEeecc----chhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEccccccCC---------C-chHH
Q 039749 50 LQTLKD--SNLEVVLGTLN----EDLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVIPG---------Q-YANF 113 (321)
Q Consensus 50 l~A~~~--~gi~v~lGv~~----~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl~~---------~-~~~~ 113 (321)
+..++. .++||++.|-. +....++++.......++ ++..+...-.+.+|-+==|-... . ....
T Consensus 75 ~~~lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~-siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~ 153 (322)
T cd06548 75 LRKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFAD-SAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKEN 153 (322)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHH-HHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHH
Q ss_pred HHHHHHHHHHHHHhCC------CCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccccc
Q 039749 114 VYDPMQNVQNALKAAN------VNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFAYF 187 (321)
Q Consensus 114 l~~am~~v~~aL~~~g------l~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~ 187 (321)
++..|+++|++|.+.| +.+.+..+-....+.....+. |.+..|++.+-.|=|...-
T Consensus 154 ~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~~~------------------l~~~vD~vnlMtYD~~g~w 215 (322)
T cd06548 154 FTLLLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEVAE------------------IAKYLDFINLMTYDFHGAW 215 (322)
T ss_pred HHHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCHHH------------------HhhcCCEEEEEEeeccCCC
Q ss_pred CCCCccCccccccCCCCccccCCccchHHHHHHH--------HHHHHHHHHHhCCCCceEEEe
Q 039749 188 GEPTTIDADYALGNPNASFVYDGTLSYNNMFDAM--------IDAMYVALEKVGGNGVKVVVS 242 (321)
Q Consensus 188 ~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~--------~da~~~al~~~g~~~~~vvI~ 242 (321)
....+.. .+++... ++.....+.+.|.|.-+|+++
T Consensus 216 ~~~~g~~--------------------spL~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 258 (322)
T cd06548 216 SNTTGHH--------------------SNLYASPADPPGGYSVDAAVNYYLSAGVPPEKLVLG 258 (322)
T ss_pred CCCCCCC--------------------CCCCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEE
No 97
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=28.27 E-value=5.6e+02 Score=24.87 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHh---cCCCCEEEEcCCCh-------hHHHHHhhCCC-EEEEeeccchhhHHhhcHHHHHHHHHHhchh
Q 039749 21 NLPSADQVIALIK---SNKINKVRIFQPYQ-------GVLQTLKDSNL-EVVLGTLNEDLQQLATDQSFAANWVKDNVLA 89 (321)
Q Consensus 21 ~~ps~~~v~~ll~---s~~~~~VR~Y~~d~-------~vl~A~~~~gi-~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~ 89 (321)
++.|++++..+++ ..|+++|||=+=.| .++..+++.++ .+.++-.-..++..|.. |-...
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~------Lk~AG--- 111 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAAD------LKEAG--- 111 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHH------HHHcC---
Confidence 3458999866553 57899999997653 56677776655 45555433334433332 22211
Q ss_pred cCCCceEEEEEccccccCC----C--chHHHHHHHHHHHHHHHhCCC-CceEeeeeeceeccccCCCCCcccccchhHHH
Q 039749 90 YIPSVKFRYITLGNEVIPG----Q--YANFVYDPMQNVQNALKAANV-NVPVTTVVSYAVLGSSYPPSNASFGQDSSAAM 162 (321)
Q Consensus 90 ~~~~~~i~~I~VGNEvl~~----~--~~~~l~~am~~v~~aL~~~gl-~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~ 162 (321)
++.|-|-=+.|.. . -...+-..|+-|.+|+ ++|+ +|||.|+.--+ .. ...+
T Consensus 112 ------l~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~-~~Gl~pVKlN~Vv~kg-----------vN----d~ei 169 (322)
T COG2896 112 ------LDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAV-EAGLTPVKLNTVLMKG-----------VN----DDEI 169 (322)
T ss_pred ------CcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCceEEEEEEecC-----------CC----HHHH
Confidence 2233333233321 0 1122455555665554 5799 79999875222 11 1346
Q ss_pred hhhHHHHHhcCCcceeccCCcccc
Q 039749 163 SKIVPFLQQNQYPLLANVYPCFAY 186 (321)
Q Consensus 163 ~~~l~fL~~~~d~~~vN~yPyf~~ 186 (321)
.++++|....+- ..+|-++
T Consensus 170 ~~l~e~~~~~~~-----~lrfIE~ 188 (322)
T COG2896 170 EDLLEFAKERGA-----QLRFIEL 188 (322)
T ss_pred HHHHHHHhhcCC-----ceEEEEE
Confidence 788888765543 3455554
No 98
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.22 E-value=1.9e+02 Score=23.95 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=20.1
Q ss_pred CHHHHHHHHhcCCCCEEEEcCCC-------hhHHHHHhhC---CCEEEEe
Q 039749 24 SADQVIALIKSNKINKVRIFQPY-------QGVLQTLKDS---NLEVVLG 63 (321)
Q Consensus 24 s~~~v~~ll~s~~~~~VR~Y~~d-------~~vl~A~~~~---gi~v~lG 63 (321)
|++++++-.++.+.+.|=+=+.+ +.+++++++. .++|++|
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45566555554445554443332 3455555543 3456666
No 99
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.89 E-value=1.2e+02 Score=26.40 Aligned_cols=47 Identities=11% Similarity=0.317 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHhcCCCC-EEEEcCCC--h----hHHHHHhhCCCEEEEeecc
Q 039749 20 NNLPSADQVIALIKSNKIN-KVRIFQPY--Q----GVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 20 ~~~ps~~~v~~ll~s~~~~-~VR~Y~~d--~----~vl~A~~~~gi~v~lGv~~ 66 (321)
+|+|-.++..+.|+..|+. .+|+.++. + +.++.+++.|++|++.+-.
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG 62 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAG 62 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6778888889999999986 58999885 3 3344445579999998873
No 100
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=27.89 E-value=1.2e+02 Score=27.72 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHhcCCCCEEEEcCCC--hhHHHHHhhCCCEEEEeeccchhhHH------------hhcHHHHHHHHHHh
Q 039749 21 NLPSADQVIALIKSNKINKVRIFQPY--QGVLQTLKDSNLEVVLGTLNEDLQQL------------ATDQSFAANWVKDN 86 (321)
Q Consensus 21 ~~ps~~~v~~ll~s~~~~~VR~Y~~d--~~vl~A~~~~gi~v~lGv~~~~~~~~------------a~~~~~a~~wv~~~ 86 (321)
...+..+..++|...||..++..-+. .+...+++.-|-.|.+-+...++.+- .++...|-+.+.+.
T Consensus 8 ~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~ 87 (222)
T PF13549_consen 8 GWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRER 87 (222)
T ss_dssp -EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHH
Confidence 34467788889999999888776443 36677777777777666654433221 11223333445555
Q ss_pred chhcCCCceEEEEEc
Q 039749 87 VLAYIPSVKFRYITL 101 (321)
Q Consensus 87 v~~~~~~~~i~~I~V 101 (321)
+..+.|+..+.++.|
T Consensus 88 ~~~~~p~~~~~gvlV 102 (222)
T PF13549_consen 88 VAAHHPGARIDGVLV 102 (222)
T ss_dssp HHHH-TT----EEEE
T ss_pred HHHhCCCCccceEEE
Confidence 555555555555544
No 101
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=27.76 E-value=99 Score=28.10 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=32.7
Q ss_pred eecc-cceeeEEecCCCCCCC----CHHHHHHHHhcCCCCEEEEcCCC--------hhHHHHHhhCCCEE
Q 039749 4 VDVG-AQVIGVNYGLLGNNLP----SADQVIALIKSNKINKVRIFQPY--------QGVLQTLKDSNLEV 60 (321)
Q Consensus 4 ~~~~-~~~~Gi~Yg~~~~~~p----s~~~v~~ll~s~~~~~VR~Y~~d--------~~vl~A~~~~gi~v 60 (321)
.+|+ .+.+=|+-|+.-+..+ +-+..+.+|+..|.+.||.|-.. ..|.+|+++.|+.+
T Consensus 111 sPTG~~G~VkIsTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 111 SPTGTPGKVKISTGPLSSQGPDAIVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp BE-SSTTEEE---STTHHGSS--EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EE
T ss_pred cCCCCceEEEeccCCccccCCCccccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCcee
Confidence 3444 4556666676633322 45667889999999999999664 35778888999877
No 102
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=27.70 E-value=1.6e+02 Score=29.63 Aligned_cols=99 Identities=13% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCCEEEEc--CCC-------------h---hHHHHHhhCCC-----EEEEeeccchhhHHhhcHHHHHHH
Q 039749 26 DQVIALIKSNKINKVRIF--QPY-------------Q---GVLQTLKDSNL-----EVVLGTLNEDLQQLATDQSFAANW 82 (321)
Q Consensus 26 ~~v~~ll~s~~~~~VR~Y--~~d-------------~---~vl~A~~~~gi-----~v~lGv~~~~~~~~a~~~~~a~~w 82 (321)
++.++.|+..|+++|-+= +.+ . ..++.+++.|+ .+|.|++.+...++....+.+...
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 230 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAEL 230 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhc
Confidence 456777777788766441 111 1 23444555665 478899988777765554443321
Q ss_pred HHHhchhcCCCceEEE--EE-----------ccccccCCCchHHHHHHHHHHHHHHHhCCC-CceEe
Q 039749 83 VKDNVLAYIPSVKFRY--IT-----------LGNEVIPGQYANFVYDPMQNVQNALKAANV-NVPVT 135 (321)
Q Consensus 83 v~~~v~~~~~~~~i~~--I~-----------VGNEvl~~~~~~~l~~am~~v~~aL~~~gl-~i~Vs 135 (321)
.|+ .|.. +. +|.+.+. +..+....++.+.+.|.++|+ .+.++
T Consensus 231 --------~~~-~is~y~L~~~p~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~L~~~Gy~~~~~~ 286 (455)
T TIGR00538 231 --------NPD-RLAVFNYAHVPWVKPAQRKIPEAALP--SAEEKLDILQETIAFLTEAGYQFIGMD 286 (455)
T ss_pred --------CCC-EEEEecCccccchhHHHhcccccCCC--CHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 111 1111 11 1111111 355667778888999999998 44433
No 103
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=26.77 E-value=2.2e+02 Score=28.55 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHhCCC-CceEe
Q 039749 110 YANFVYDPMQNVQNALKAANV-NVPVT 135 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl-~i~Vs 135 (321)
+.......+..+...|.++|+ +..++
T Consensus 260 ~~~~~~~~~~~~~~~L~~~Gy~~ye~s 286 (453)
T PRK09249 260 SPEEKLAILQQTIETLTEAGYQYIGMD 286 (453)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 345566667788899999998 44443
No 104
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.36 E-value=1.4e+02 Score=26.02 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=36.9
Q ss_pred EEEcCCC-hhHHHHHh------hCCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhcCCCceEEEEEcccccc
Q 039749 40 VRIFQPY-QGVLQTLK------DSNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAYIPSVKFRYITLGNEVI 106 (321)
Q Consensus 40 VR~Y~~d-~~vl~A~~------~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNEvl 106 (321)
+.+||+. +++++.+- ..|+-+|-.+.|++ + .++..+|+. .|..| .+.++.-|.|||..=
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNee--S----f~svqdw~t-qIkty-sw~naqvilvgnKCD 137 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE--S----FNSVQDWIT-QIKTY-SWDNAQVILVGNKCD 137 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHH--H----HHHHHHHHH-Hheee-eccCceEEEEecccC
Confidence 4566665 34433322 25667777777753 3 345567865 45554 788999999999864
No 105
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=26.10 E-value=3.5e+02 Score=29.69 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCCEEEEcCC--ChhHHHHHhhCCCEEEEeeccch--hhHHhhcHHHHHHHHHHhchhcCCCceEEEEEcc
Q 039749 27 QVIALIKSNKINKVRIFQP--YQGVLQTLKDSNLEVVLGTLNED--LQQLATDQSFAANWVKDNVLAYIPSVKFRYITLG 102 (321)
Q Consensus 27 ~v~~ll~s~~~~~VR~Y~~--d~~vl~A~~~~gi~v~lGv~~~~--~~~~a~~~~~a~~wv~~~v~~~~~~~~i~~I~VG 102 (321)
+.++++|..|++.||+..- ++.-++-|...||-|+-=..... .+.-..-.+.+..-+++.|.+.--.-.|.--++|
T Consensus 325 ~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~g 404 (808)
T COG3250 325 RDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLG 404 (808)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecc
Confidence 3456778899999999843 46788888899998876544221 1100011233333355555543222247788999
Q ss_pred ccccC
Q 039749 103 NEVIP 107 (321)
Q Consensus 103 NEvl~ 107 (321)
||.-.
T Consensus 405 NE~~~ 409 (808)
T COG3250 405 NESGH 409 (808)
T ss_pred ccccC
Confidence 99754
No 106
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=25.12 E-value=1.3e+02 Score=30.27 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCEEEEc--CCCh-------------h---HHHHHhhCC-----CEEEEeeccchhhHHhhcHHHHHHHH
Q 039749 27 QVIALIKSNKINKVRIF--QPYQ-------------G---VLQTLKDSN-----LEVVLGTLNEDLQQLATDQSFAANWV 83 (321)
Q Consensus 27 ~v~~ll~s~~~~~VR~Y--~~d~-------------~---vl~A~~~~g-----i~v~lGv~~~~~~~~a~~~~~a~~wv 83 (321)
+.++.|+..|+++|-+= +.|+ . .+..+++.| +.+|.|+|.+..+++..+.+.+.++=
T Consensus 164 e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (449)
T PRK09058 164 EKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLG 243 (449)
T ss_pred HHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcC
Confidence 44667777788766321 1121 2 233344455 25788999887777766655543321
Q ss_pred HHhchhcCCCceEEEEEc--cccccCC----C------chHHHHHHHHHHHHHHHhCCC-CceE
Q 039749 84 KDNVLAYIPSVKFRYITL--GNEVIPG----Q------YANFVYDPMQNVQNALKAANV-NVPV 134 (321)
Q Consensus 84 ~~~v~~~~~~~~i~~I~V--GNEvl~~----~------~~~~l~~am~~v~~aL~~~gl-~i~V 134 (321)
-++|. +..+.+ |. .+.+ . +.+......+..++.|.++|+ ++-+
T Consensus 244 ~~~is-------~y~L~~~pgT-~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~yei 299 (449)
T PRK09058 244 LDGVD-------LYALNLLPGT-PLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQLSN 299 (449)
T ss_pred CCEEE-------EeccccCCCC-HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEee
Confidence 11111 111222 21 1111 0 224455666788899999998 5433
No 107
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.84 E-value=7.2e+02 Score=24.98 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=64.2
Q ss_pred EEEEEcc-----ccccCC---C-chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhH
Q 039749 96 FRYITLG-----NEVIPG---Q-YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIV 166 (321)
Q Consensus 96 i~~I~VG-----NEvl~~---~-~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l 166 (321)
...+.+| +++|-. . +..+...+++.+|++.. .+.++|.. +. .|| |.= ...+...+
T Consensus 261 ~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p----~i~i~td~----Iv-GfP---gET----~edf~~tl 324 (449)
T PRK14332 261 CPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP----DVGITTDI----IV-GFP---NET----EEEFEDTL 324 (449)
T ss_pred cceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC----CCEEEEEE----Ee-eCC---CCC----HHHHHHHH
Confidence 4567777 344422 2 67888888888887643 35555532 22 254 221 23456667
Q ss_pred HHHHhcCCcceeccCCcccccCCCCccCccccccCCCCccccCCccchHHHHHHHHHHHHHHHHHhCCCCceEEEeeccC
Q 039749 167 PFLQQNQYPLLANVYPCFAYFGEPTTIDADYALGNPNASFVYDGTLSYNNMFDAMIDAMYVALEKVGGNGVKVVVSETGW 246 (321)
Q Consensus 167 ~fL~~~~d~~~vN~yPyf~~~~~p~~i~~~~A~f~~~~~~~~~~~~~y~n~~da~~da~~~al~~~g~~~~~vvI~EtGW 246 (321)
+|+.+. .+=.+++|+|-....-| .+..+. ..........++..+.+-|-.-.....++.-+...+|+|.|.+.
T Consensus 325 ~~v~~l-~~~~~~~f~ys~~~GT~-----a~~~~~-~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~ 397 (449)
T PRK14332 325 AVVREV-QFDMAFMFKYSEREGTM-----AKRKLP-DNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSR 397 (449)
T ss_pred HHHHhC-CCCEEEEEEecCCCCCh-----hHHhCc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccC
Confidence 776543 45566777765432211 111121 11111122234455554444433334444433568888876544
Q ss_pred C
Q 039749 247 P 247 (321)
Q Consensus 247 P 247 (321)
.
T Consensus 398 ~ 398 (449)
T PRK14332 398 K 398 (449)
T ss_pred C
Confidence 3
No 108
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=24.71 E-value=1.9e+02 Score=21.48 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCCEEEEcCCChhHHHHHhhCCCEEEEeeccchhh
Q 039749 25 ADQVIALIKSNKINKVRIFQPYQGVLQTLKDSNLEVVLGTLNEDLQ 70 (321)
Q Consensus 25 ~~~v~~ll~s~~~~~VR~Y~~d~~vl~A~~~~gi~v~lGv~~~~~~ 70 (321)
....+++|...+++.|=.-...+.....|+..||+|+.+ ...++.
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~-~~~~i~ 86 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG-AGGDIE 86 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES-TSSBHH
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc-CCCCHH
Confidence 456788887799999888888899999999999999999 433443
No 109
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.68 E-value=1.9e+02 Score=26.10 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=37.1
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCC---C-hhHHHHHhhCCCEEE
Q 039749 11 IGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQP---Y-QGVLQTLKDSNLEVV 61 (321)
Q Consensus 11 ~Gi~Yg~~~~~~ps~~~v~~ll~s~~~~~VR~Y~~---d-~~vl~A~~~~gi~v~ 61 (321)
+.||++..-..+ +-++.++.++..|++.|-++.. + ..+.+.++++||++.
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEE
Confidence 457766444444 6788899999999999999753 2 356777788999975
No 110
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=24.07 E-value=1.2e+02 Score=31.00 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=26.3
Q ss_pred HHHHhcCCCCEEEEcCC--C----hhHHHHHhhCCCEEEEeec
Q 039749 29 IALIKSNKINKVRIFQP--Y----QGVLQTLKDSNLEVVLGTL 65 (321)
Q Consensus 29 ~~ll~s~~~~~VR~Y~~--d----~~vl~A~~~~gi~v~lGv~ 65 (321)
++....+|++.+|+|+. | ...++++++.|..+.+.+-
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 34445789999999987 3 2456677789998655443
No 111
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=22.96 E-value=5.7e+02 Score=25.48 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=51.2
Q ss_pred hHHHHHhhCCCEEEEeeccchhhH----------------Hh-hcHHHHHHHHHHhchhcC-CCceEEEEEccccccCC-
Q 039749 48 GVLQTLKDSNLEVVLGTLNEDLQQ----------------LA-TDQSFAANWVKDNVLAYI-PSVKFRYITLGNEVIPG- 108 (321)
Q Consensus 48 ~vl~A~~~~gi~v~lGv~~~~~~~----------------~a-~~~~~a~~wv~~~v~~~~-~~~~i~~I~VGNEvl~~- 108 (321)
-.|+++++.|+..+++.-|+..-- |. ...++-...+.+-++.|- -...|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 578999999999998876642100 10 111122233333332221 14679999999999753
Q ss_pred -----C----chHHHHHHHHHHHHHHHhCCCCceEeeeeece
Q 039749 109 -----Q----YANFVYDPMQNVQNALKAANVNVPVTTVVSYA 141 (321)
Q Consensus 109 -----~----~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~ 141 (321)
+ ..++....|+.++++|+++||..+|+..++.+
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~ 229 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGD 229 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhh
Confidence 1 57888999999999999999976677777654
No 112
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=22.80 E-value=6.3e+02 Score=24.22 Aligned_cols=57 Identities=5% Similarity=0.012 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
....++..|+++|.+|.+ ++. ++.+.....+. ...| + +.-|.+..|++.+-.|=|+.
T Consensus 133 d~~n~~~ll~elr~~l~~-~~~--ls~a~~~~~~~------~~~y--d--------~~~l~~~vD~i~vMtYD~~g 189 (345)
T cd02878 133 DGKNYLEFLKLLKSKLPS-GKS--LSIAAPASYWY------LKGF--P--------IKDMAKYVDYIVYMTYDLHG 189 (345)
T ss_pred HHHHHHHHHHHHHHHhCc-CcE--EEEEcCCChhh------hcCC--c--------HHHHHhhCcEEEEEeecccC
Confidence 456789999999999975 432 22221111000 0011 0 12255677999888887764
No 113
>PRK09989 hypothetical protein; Provisional
Probab=22.68 E-value=2e+02 Score=26.08 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=38.6
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcC---CC-hhHHHHHhhCCCEEEE
Q 039749 11 IGVNYGLLGNNLPSADQVIALIKSNKINKVRIFQ---PY-QGVLQTLKDSNLEVVL 62 (321)
Q Consensus 11 ~Gi~Yg~~~~~~ps~~~v~~ll~s~~~~~VR~Y~---~d-~~vl~A~~~~gi~v~l 62 (321)
..+|.+..-..+ |-++.++.++..|++.|-+.. .+ ..+.+.++++||++..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456777666665 567888999999999999843 33 3677788899999875
No 114
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=22.55 E-value=1.2e+02 Score=29.49 Aligned_cols=44 Identities=9% Similarity=0.268 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHhcCCCCEEEEcCCC------hhHHHHHhhCCCEEEEeecc
Q 039749 22 LPSADQVIALIKSNKINKVRIFQPY------QGVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 22 ~ps~~~v~~ll~s~~~~~VR~Y~~d------~~vl~A~~~~gi~v~lGv~~ 66 (321)
.|+++++.++++... ..||+|... .++++.+++.||+|.+|=-+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 367788888886543 667777443 36788888999999888654
No 115
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=22.45 E-value=64 Score=26.08 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=17.9
Q ss_pred CHHHHHHHHhcC---CCCEEEEcCCCh
Q 039749 24 SADQVIALIKSN---KINKVRIFQPYQ 47 (321)
Q Consensus 24 s~~~v~~ll~s~---~~~~VR~Y~~d~ 47 (321)
.|+.+..+|+.+ .-+++||||+|.
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG 28 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDG 28 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCC
Confidence 467777777654 247999999984
No 116
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=21.94 E-value=27 Score=30.78 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=24.0
Q ss_pred ccCCCCCcccccchhHHHhhhH-----HHHHhcCCcceeccCCccccc
Q 039749 145 SSYPPSNASFGQDSSAAMSKIV-----PFLQQNQYPLLANVYPCFAYF 187 (321)
Q Consensus 145 ~s~PPs~g~f~~~~~~~~~~~l-----~fL~~~~d~~~vN~yPyf~~~ 187 (321)
+.+||.++.|..++...|..+. +-+.-+.|+-.+-.||||..+
T Consensus 25 Dr~P~~a~~yY~~id~~I~~~tG~~~~~tVvLT~d~~FlsyyPY~gFQ 72 (178)
T PF12249_consen 25 DRRPPDAERYYPEIDAAIREQTGRPPDDTVVLTDDYSFLSYYPYWGFQ 72 (178)
T ss_pred ccCCCchHHhHHHHHHHHHHhcCCCCCCeEEEeccccceEeccccccc
Confidence 4466666666555544443321 011124566677889999874
No 117
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.82 E-value=8e+02 Score=24.41 Aligned_cols=59 Identities=8% Similarity=0.206 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCccc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCFA 185 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 185 (321)
+..+...+++.+++.+. .+.++|..-. .|| |. -...+...++|+.+. .+-.+++++|-.
T Consensus 280 ~~~~~~~~i~~lr~~~~----~i~i~~d~Iv-----G~P---gE----T~ed~~~tl~~i~~l-~~~~~~~~~~sp 338 (439)
T PRK14328 280 TREYYLELVEKIKSNIP----DVAITTDIIV-----GFP---GE----TEEDFEETLDLVKEV-RYDSAFTFIYSK 338 (439)
T ss_pred CHHHHHHHHHHHHHhCC----CCEEEEEEEE-----ECC---CC----CHHHHHHHHHHHHhc-CCCcccceEecC
Confidence 67778888887777532 3555553322 244 22 123456677777654 355667777654
No 118
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=21.70 E-value=1.7e+02 Score=34.22 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEEcCCC-----hhHHHHHhhCCCEEEEeecc
Q 039749 20 NNLPSADQVIALIKSNKINKVRIFQPY-----QGVLQTLKDSNLEVVLGTLN 66 (321)
Q Consensus 20 ~~~ps~~~v~~ll~s~~~~~VR~Y~~d-----~~vl~A~~~~gi~v~lGv~~ 66 (321)
|...+++++++..+..|.+.|-|=|-+ +....++++.||+|+.|+-.
T Consensus 347 Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~ 398 (1437)
T PRK00448 347 DAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEA 398 (1437)
T ss_pred ccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeE
Confidence 445689999999999999999998876 56777778899999999864
No 119
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.42 E-value=2.4e+02 Score=27.06 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=41.2
Q ss_pred ccceeeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEc---CC---C----------------hhHHHHHhhCCCEE----
Q 039749 7 GAQVIGVNYGLLGNNLPSADQVIALIKSNKINKVRIF---QP---Y----------------QGVLQTLKDSNLEV---- 60 (321)
Q Consensus 7 ~~~~~Gi~Yg~~~~~~ps~~~v~~ll~s~~~~~VR~Y---~~---d----------------~~vl~A~~~~gi~v---- 60 (321)
..+-+|+|-|+.-|-+| ++|+++|.... ++.-+| +. + .+...-++++||+|
T Consensus 112 ~~~VVGLsIgTRPDClp--d~VldlL~e~~-~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~Hi 188 (312)
T COG1242 112 EAGVVGLSIGTRPDCLP--DDVLDLLAEYN-KRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHL 188 (312)
T ss_pred cCCeeEEeecCCCCCCc--HHHHHHHHHHh-hheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEE
Confidence 45678999999888887 88988886431 223333 11 1 24455667899974
Q ss_pred EEeeccchhhH
Q 039749 61 VLGTLNEDLQQ 71 (321)
Q Consensus 61 ~lGv~~~~~~~ 71 (321)
++|+|-++-+.
T Consensus 189 I~GLPgE~~~~ 199 (312)
T COG1242 189 INGLPGETRDE 199 (312)
T ss_pred eeCCCCCCHHH
Confidence 88888766544
No 120
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=21.27 E-value=4.6e+02 Score=24.19 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCceEEEeeccCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 039749 235 NGVKVVVSETGWPSAGADLATTNNAKTYVNNVIQRVLT 272 (321)
Q Consensus 235 ~~~~vvI~EtGWPs~G~~~as~~na~~y~~~~i~~~~~ 272 (321)
++.-+.|||+|.+.... ....+.|+.++...++.+.+
T Consensus 89 ~~~~~aIGEiGLD~~~~-~~~~~~Q~~vf~~ql~lA~~ 125 (258)
T PRK11449 89 PAKVVAVGEIGLDLFGD-DPQFERQQWLLDEQLKLAKR 125 (258)
T ss_pred CCCEEEEEecccCCCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 33567899999996533 24567788888888887764
No 121
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.12 E-value=6.1e+02 Score=22.80 Aligned_cols=86 Identities=10% Similarity=0.271 Sum_probs=52.5
Q ss_pred CCHHHHHHHHhcCCCCEEEEcCCC---hhHHHHHhh--CCCEEEEeeccchhhHHhhcHHHHHHHHHHhchhcCCCceEE
Q 039749 23 PSADQVIALIKSNKINKVRIFQPY---QGVLQTLKD--SNLEVVLGTLNEDLQQLATDQSFAANWVKDNVLAYIPSVKFR 97 (321)
Q Consensus 23 ps~~~v~~ll~s~~~~~VR~Y~~d---~~vl~A~~~--~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~i~ 97 (321)
.+++|+.+.+ +.|.+.|++|-++ +.-++++++ .+++++. ...+. .+.+.+|++. ...
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI~-----~~N~~~~l~a---------Ga~ 178 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGVN-----LDNVKDWFAA---------GAD 178 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCCC-----HHHHHHHHHC---------CCc
Confidence 3788887775 4789999999655 466777775 3466542 12221 2334455552 356
Q ss_pred EEEccccccCC--C-chHHHHHHHHHHHHHHH
Q 039749 98 YITLGNEVIPG--Q-YANFVYDPMQNVQNALK 126 (321)
Q Consensus 98 ~I~VGNEvl~~--~-~~~~l~~am~~v~~aL~ 126 (321)
++.||...+.. . ..+.+-...++++++++
T Consensus 179 ~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 179 AVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 88888877643 1 34556666666655554
No 122
>PF14903 WG_beta_rep: WG containing repeat
Probab=21.00 E-value=70 Score=19.35 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.9
Q ss_pred eeeecCCCceeeeccc
Q 039749 305 FGLFYPDMTPVYPVNI 320 (321)
Q Consensus 305 wGlf~~d~~~ky~l~~ 320 (321)
||+++.+|+.+.+..+
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 8999999988876644
No 123
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=20.73 E-value=1e+02 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.303 Sum_probs=25.9
Q ss_pred CCCCCcccccchhHHHhhhHHHHHh--cCCcceeccCCcccc
Q 039749 147 YPPSNASFGQDSSAAMSKIVPFLQQ--NQYPLLANVYPCFAY 186 (321)
Q Consensus 147 ~PPs~g~f~~~~~~~~~~~l~fL~~--~~d~~~vN~yPyf~~ 186 (321)
.|-.+..+..| +.++.++.|... -+.++++|+||+-+.
T Consensus 21 NPS~A~~~~~D--~T~~~~~~~a~~~gyg~~~i~NLf~~~~t 60 (136)
T PF07799_consen 21 NPSTADAEKDD--PTIRRCINFARRWGYGGVIIVNLFPQRST 60 (136)
T ss_pred CCCCCCCcCCC--HHHHHHHHHHhhcCCCeEEEEEecccccC
Confidence 34444444443 677788888765 348899999999873
No 124
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.16 E-value=8.7e+02 Score=24.19 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEeeeeeceeccccCCCCCcccccchhHHHhhhHHHHHhcCCcceeccCCcc
Q 039749 110 YANFVYDPMQNVQNALKAANVNVPVTTVVSYAVLGSSYPPSNASFGQDSSAAMSKIVPFLQQNQYPLLANVYPCF 184 (321)
Q Consensus 110 ~~~~l~~am~~v~~aL~~~gl~i~VsT~~~~~~l~~s~PPs~g~f~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf 184 (321)
+.++.+.+++.+|++. ..+.++|..-.+ +| |.- ...+...++|+.+. .+-.+++|+|-
T Consensus 270 ~~~~~~~~v~~lr~~~----~~i~i~~d~IvG-----~P---gEt----~ed~~~tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 270 RREKYLERIAEIREAL----PDVVLSTDIIVG-----FP---GET----EEDFQETLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred CHHHHHHHHHHHHHhC----CCcEEEEeEEEE-----CC---CCC----HHHHHHHHHHHHhc-CCCEeeeeEee
Confidence 5667777777777653 345555543221 44 221 23456677777654 35567777754
Done!