BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039753
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 8 GFTITLSNTEYNHRQVMNILEEKNY-VLDQIHLISIPDGLETWEDRSELGK----LTESL 62
GF IT NTEYNH++++ K + + SIPDGL E ++ + L +S+
Sbjct: 36 GFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSV 95
Query: 63 MRVMPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI 107
+ + EL+ N +T +++D + I+ AE+ +
Sbjct: 96 RKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFEL 140
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 18 YNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDS 77
Y+ R VM L +K V ++ + I P +E WE + + +L E+ R+ + +E I +
Sbjct: 364 YSQR-VMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINEC 422
Query: 78 NARETH 83
E H
Sbjct: 423 FNYEHH 428
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 22 QVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGK--------LTESLMRVMPRKREEL 73
+VM L E+ Y++ G+ DRS+L K T ++MR++PR+ + L
Sbjct: 107 EVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPL 166
Query: 74 IKDSNARETHENITYVIADGNVEQ 97
+ + + E E IT+ G EQ
Sbjct: 167 VYNMTSFEQGE-ITFDGIGGLTEQ 189
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 37 IHLISIPDGLETWEDRSELG---------KLTESLMRVMPRKREELIKDSNARETHEN 85
+ L+ P + T+ +R LG KL ESL+ V P+ +LI + ++EN
Sbjct: 85 VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNEN 142
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 20 HRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREE 72
HR ++N + +++ +D++ P+ + + R+E T+ +M PR R+E
Sbjct: 17 HRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSRTEFRDKTDYIM-YNPRPRDE 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,330,839
Number of Sequences: 62578
Number of extensions: 113618
Number of successful extensions: 213
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 12
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)