Query 039753
Match_columns 125
No_of_seqs 162 out of 1050
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02173 UDP-glucosyl transfer 99.9 1.5E-25 3.3E-30 168.6 11.3 117 1-125 26-144 (449)
2 PLN02555 limonoid glucosyltran 99.9 9E-25 2E-29 165.6 11.2 123 1-125 28-156 (480)
3 PLN02152 indole-3-acetate beta 99.9 1.9E-24 4.2E-29 162.9 11.6 119 1-125 24-146 (455)
4 PLN02410 UDP-glucoronosyl/UDP- 99.9 1.7E-24 3.7E-29 163.2 10.6 117 1-125 28-145 (451)
5 PLN02562 UDP-glycosyltransfera 99.9 7E-24 1.5E-28 159.9 11.6 117 1-125 27-143 (448)
6 PLN02534 UDP-glycosyltransfera 99.9 1E-23 2.2E-28 160.2 11.1 119 1-124 29-158 (491)
7 PLN02863 UDP-glucoronosyl/UDP- 99.9 8E-24 1.7E-28 160.5 10.5 116 1-125 30-154 (477)
8 PLN02670 transferase, transfer 99.9 1.5E-23 3.3E-28 158.6 10.4 114 1-124 27-149 (472)
9 PLN02554 UDP-glycosyltransfera 99.9 7.2E-23 1.6E-27 155.6 11.3 121 1-125 23-152 (481)
10 PLN00164 glucosyltransferase; 99.9 1.5E-22 3.2E-27 153.8 11.8 119 1-125 24-150 (480)
11 PLN02992 coniferyl-alcohol glu 99.9 1.7E-22 3.8E-27 153.1 11.3 114 1-125 26-144 (481)
12 PLN03004 UDP-glycosyltransfera 99.9 4.6E-22 9.9E-27 149.9 11.2 122 1-125 24-152 (451)
13 PLN02210 UDP-glucosyl transfer 99.9 3.7E-22 8.1E-27 150.8 10.6 113 1-125 29-143 (456)
14 PLN02207 UDP-glycosyltransfera 99.9 8.1E-22 1.8E-26 149.1 12.0 123 1-125 24-155 (468)
15 PLN02448 UDP-glycosyltransfera 99.9 1.2E-21 2.7E-26 148.2 11.3 115 1-125 31-148 (459)
16 PLN00414 glycosyltransferase f 99.9 2E-21 4.3E-26 146.5 10.5 113 1-125 25-146 (446)
17 PLN02764 glycosyltransferase f 99.9 4.2E-21 9.1E-26 144.6 10.9 114 1-124 26-146 (453)
18 PLN03015 UDP-glucosyl transfer 99.8 1.2E-20 2.7E-25 142.6 11.2 120 1-125 24-148 (470)
19 PLN02167 UDP-glycosyltransfera 99.8 1.4E-20 3.1E-25 143.0 11.6 125 1-125 24-158 (475)
20 PLN03007 UDP-glucosyltransfera 99.8 4.3E-20 9.3E-25 140.6 10.3 120 1-124 26-161 (482)
21 PLN02208 glycosyltransferase f 99.8 8.1E-20 1.7E-24 137.7 10.7 111 1-124 25-144 (442)
22 TIGR01426 MGT glycosyltransfer 99.3 3.6E-11 7.8E-16 89.4 9.5 103 1-116 16-123 (392)
23 cd03784 GT1_Gtf_like This fami 99.1 3.2E-10 6.9E-15 84.3 6.0 105 1-118 21-137 (401)
24 KOG1192 UDP-glucuronosyl and U 98.6 3.3E-08 7.1E-13 75.5 3.1 122 1-124 26-154 (496)
25 PF03033 Glyco_transf_28: Glyc 98.0 5.9E-06 1.3E-10 52.8 3.3 108 1-118 19-133 (139)
26 PF13528 Glyco_trans_1_3: Glyc 97.4 0.0012 2.7E-08 47.6 8.2 44 69-117 82-125 (318)
27 TIGR00661 MJ1255 conserved hyp 96.7 0.013 2.8E-07 42.7 7.6 30 84-114 92-121 (321)
28 PHA03392 egt ecdysteroid UDP-g 96.3 0.02 4.3E-07 44.6 7.0 33 84-116 135-168 (507)
29 PF00201 UDPGT: UDP-glucoronos 96.2 0.0055 1.2E-07 47.1 3.5 30 85-114 119-148 (500)
30 cd03785 GT1_MurG MurG is an N- 92.2 1.7 3.7E-05 31.5 8.5 96 1-112 20-118 (350)
31 COG0299 PurN Folate-dependent 91.8 0.66 1.4E-05 31.8 5.4 31 84-114 28-58 (200)
32 COG1819 Glycosyl transferases, 91.0 0.31 6.8E-06 37.0 3.6 35 1-44 22-56 (406)
33 TIGR01133 murG undecaprenyldip 89.8 4.1 8.8E-05 29.5 8.5 94 2-112 22-119 (348)
34 cd03818 GT1_ExpC_like This fam 88.9 6.4 0.00014 29.3 9.1 98 1-113 17-116 (396)
35 cd03800 GT1_Sucrose_synthase T 87.9 3.1 6.8E-05 30.4 6.9 28 85-112 101-130 (398)
36 PF07894 DUF1669: Protein of u 87.7 0.96 2.1E-05 32.8 3.9 47 67-115 132-183 (284)
37 TIGR02470 sucr_synth sucrose s 87.7 3.9 8.4E-05 33.9 7.7 102 3-113 299-416 (784)
38 PLN00142 sucrose synthase 86.9 3.2 6.9E-05 34.6 6.8 69 35-111 361-436 (815)
39 cd03816 GT1_ALG1_like This fam 86.3 6.8 0.00015 29.6 8.0 37 1-43 24-60 (415)
40 PRK00726 murG undecaprenyldiph 84.2 13 0.00029 27.1 8.6 95 2-112 23-120 (357)
41 cd01018 ZntC Metal binding pro 84.0 4.4 9.6E-05 28.8 5.8 50 69-122 205-256 (266)
42 TIGR02468 sucrsPsyn_pln sucros 83.9 10 0.00022 32.6 8.5 110 1-111 205-338 (1050)
43 PLN02331 phosphoribosylglycina 83.1 4.4 9.5E-05 28.0 5.3 45 70-114 13-57 (207)
44 PRK10307 putative glycosyl tra 83.1 5.1 0.00011 29.9 6.1 18 1-18 25-42 (412)
45 PRK13011 formyltetrahydrofolat 83.0 4.2 9.2E-05 29.5 5.4 42 69-112 102-143 (286)
46 COG3150 Predicted esterase [Ge 81.9 2.3 5.1E-05 28.7 3.4 44 68-115 47-90 (191)
47 PRK12446 undecaprenyldiphospho 81.7 17 0.00037 27.0 8.3 98 2-115 23-123 (352)
48 TIGR03449 mycothiol_MshA UDP-N 80.5 13 0.00028 27.5 7.5 18 1-18 30-47 (405)
49 TIGR03590 PseG pseudaminic aci 79.9 20 0.00042 25.7 8.2 38 1-44 24-61 (279)
50 PF06506 PrpR_N: Propionate ca 79.6 3.1 6.6E-05 27.8 3.5 43 67-116 111-153 (176)
51 PLN02828 formyltetrahydrofolat 78.6 8.1 0.00018 27.9 5.5 47 68-114 82-131 (268)
52 KOG1615 Phosphoserine phosphat 78.6 3.1 6.7E-05 28.8 3.2 41 66-109 89-129 (227)
53 PF05728 UPF0227: Uncharacteri 76.7 6.7 0.00014 26.6 4.5 43 70-117 49-92 (187)
54 COG4671 Predicted glycosyl tra 75.8 4.7 0.0001 30.4 3.8 35 2-44 33-69 (400)
55 PF02603 Hpr_kinase_N: HPr Ser 75.7 4.3 9.3E-05 25.7 3.2 43 70-115 70-114 (127)
56 cd03805 GT1_ALG2_like This fam 75.6 28 0.0006 25.5 7.9 17 1-17 23-39 (392)
57 PRK01021 lpxB lipid-A-disaccha 74.3 16 0.00034 29.6 6.5 47 66-116 295-346 (608)
58 cd03823 GT1_ExpE7_like This fa 74.0 17 0.00036 25.7 6.3 29 85-113 96-127 (359)
59 PRK04940 hypothetical protein; 72.4 13 0.00029 25.2 5.0 31 86-116 61-92 (180)
60 TIGR00639 PurN phosphoribosylg 71.7 16 0.00036 24.8 5.4 44 70-113 14-57 (190)
61 PF01555 N6_N4_Mtase: DNA meth 71.4 9.3 0.0002 25.7 4.3 30 85-114 190-221 (231)
62 PRK13010 purU formyltetrahydro 71.3 13 0.00028 27.1 5.1 43 69-113 106-148 (289)
63 COG0707 MurG UDP-N-acetylgluco 71.1 35 0.00076 25.7 7.5 95 2-112 22-120 (357)
64 TIGR01490 HAD-SF-IB-hyp1 HAD-s 70.7 26 0.00057 23.3 6.3 42 66-110 88-129 (202)
65 COG1435 Tdk Thymidine kinase [ 70.7 9.9 0.00021 26.3 4.1 28 85-112 82-116 (201)
66 TIGR00655 PurU formyltetrahydr 70.4 13 0.00027 27.0 4.9 45 68-114 96-140 (280)
67 PRK06027 purU formyltetrahydro 70.3 15 0.00033 26.6 5.3 43 69-113 102-144 (286)
68 TIGR00679 hpr-ser Hpr(Ser) kin 69.7 36 0.00078 25.1 7.1 47 69-118 70-118 (304)
69 PF00391 PEP-utilizers: PEP-ut 68.9 9.4 0.0002 21.9 3.3 29 85-113 30-60 (80)
70 PRK05647 purN phosphoribosylgl 68.8 20 0.00044 24.5 5.4 45 70-114 15-59 (200)
71 PF07881 Fucose_iso_N1: L-fuco 68.4 33 0.00072 23.1 6.7 65 35-105 4-72 (171)
72 PF12000 Glyco_trans_4_3: Gkyc 67.7 34 0.00074 23.0 9.6 93 7-113 2-95 (171)
73 PRK14089 ipid-A-disaccharide s 65.8 33 0.00071 25.7 6.4 32 85-116 76-112 (347)
74 TIGR02137 HSK-PSP phosphoserin 65.8 17 0.00036 24.9 4.6 40 66-109 69-108 (203)
75 cd01017 AdcA Metal binding pro 65.7 20 0.00044 25.6 5.2 43 69-115 208-252 (282)
76 cd03794 GT1_wbuB_like This fam 64.4 48 0.001 23.4 7.2 18 2-19 25-42 (394)
77 PF01297 TroA: Periplasmic sol 64.3 14 0.00031 25.9 4.1 42 70-115 188-231 (256)
78 PF04007 DUF354: Protein of un 63.8 59 0.0013 24.3 9.2 30 85-115 83-112 (335)
79 COG0313 Predicted methyltransf 62.5 26 0.00056 25.5 5.1 50 70-123 67-123 (275)
80 cd01981 Pchlide_reductase_B Pc 61.7 18 0.00038 27.7 4.4 26 84-112 369-394 (430)
81 PRK09545 znuA high-affinity zi 60.1 29 0.00063 25.4 5.2 44 68-115 239-284 (311)
82 TIGR03772 anch_rpt_subst ancho 59.7 29 0.00062 27.3 5.3 41 69-113 408-452 (479)
83 PF10588 NADH-G_4Fe-4S_3: NADH 58.5 5.9 0.00013 19.9 1.0 29 84-112 12-41 (41)
84 PF13579 Glyco_trans_4_4: Glyc 58.4 5.1 0.00011 24.9 0.9 91 1-113 11-103 (160)
85 PRK00945 acetyl-CoA decarbonyl 56.3 38 0.00083 22.8 4.8 17 98-114 55-71 (171)
86 TIGR01234 L-ribulokinase L-rib 55.9 82 0.0018 24.9 7.4 57 55-113 407-468 (536)
87 cd01020 TroA_b Metal binding p 54.0 46 0.001 23.6 5.3 41 68-112 193-238 (264)
88 PF00201 UDPGT: UDP-glucoronos 53.8 0.87 1.9E-05 35.1 -3.8 108 1-117 20-133 (500)
89 cd03819 GT1_WavL_like This fam 53.7 79 0.0017 22.5 8.0 87 1-113 20-108 (355)
90 PF12017 Tnp_P_element: Transp 53.7 37 0.0008 24.1 4.6 39 67-108 195-233 (236)
91 PRK04031 DNA primase; Provisio 53.0 34 0.00074 26.3 4.6 43 68-112 343-386 (408)
92 PLN02954 phosphoserine phospha 52.5 30 0.00065 23.4 4.1 41 66-109 85-125 (224)
93 PRK15183 Vi polysaccharide bio 52.5 9.6 0.00021 23.6 1.4 40 69-118 100-141 (143)
94 cd01019 ZnuA Zinc binding prot 50.8 53 0.0011 23.7 5.2 43 69-115 216-260 (286)
95 PRK05749 3-deoxy-D-manno-octul 50.6 95 0.0021 23.4 6.8 28 85-113 124-154 (425)
96 PRK05428 HPr kinase/phosphoryl 49.5 1.1E+02 0.0023 22.8 7.1 48 68-118 69-118 (308)
97 TIGR01488 HAD-SF-IB Haloacid D 49.3 28 0.00061 22.5 3.4 41 67-110 75-115 (177)
98 COG0560 SerB Phosphoserine pho 48.7 25 0.00055 24.2 3.2 43 65-110 77-119 (212)
99 KOG4589 Cell division protein 48.6 20 0.00042 24.9 2.5 12 84-95 135-146 (232)
100 PF13439 Glyco_transf_4: Glyco 48.5 8.2 0.00018 24.4 0.7 18 1-18 22-39 (177)
101 cd02957 Phd_like Phosducin (Ph 48.4 52 0.0011 19.8 4.3 38 68-114 44-84 (113)
102 PRK07106 5-aminoimidazole-4-ca 48.4 23 0.00051 27.0 3.1 26 86-111 331-358 (390)
103 TIGR02472 sucr_P_syn_N sucrose 48.0 1.2E+02 0.0026 23.0 7.8 103 1-112 36-143 (439)
104 PF04218 CENP-B_N: CENP-B N-te 47.5 12 0.00026 19.9 1.1 12 98-109 25-36 (53)
105 TIGR00347 bioD dethiobiotin sy 47.3 63 0.0014 20.8 4.8 40 70-114 89-137 (166)
106 PF00205 TPP_enzyme_M: Thiamin 47.1 44 0.00095 20.9 3.9 42 71-115 2-48 (137)
107 PRK11524 putative methyltransf 47.0 50 0.0011 23.7 4.6 32 85-116 207-240 (284)
108 PRK11509 hydrogenase-1 operon 46.9 73 0.0016 20.5 4.9 29 85-115 69-100 (132)
109 TIGR01491 HAD-SF-IB-PSPlk HAD- 46.0 49 0.0011 21.8 4.2 41 67-110 82-122 (201)
110 PF13223 DUF4031: Protein of u 45.7 7.2 0.00016 23.0 0.1 29 85-114 14-42 (83)
111 PF07837 FTCD_N: Formiminotran 45.4 20 0.00044 24.3 2.2 16 98-113 110-125 (178)
112 CHL00076 chlB photochlorophyll 45.2 43 0.00094 26.5 4.3 25 85-112 374-398 (513)
113 TIGR03123 one_C_unchar_1 proba 44.5 87 0.0019 23.3 5.5 26 89-114 281-307 (318)
114 PF10087 DUF2325: Uncharacteri 43.9 34 0.00073 20.3 2.9 36 85-120 50-89 (97)
115 cd01137 PsaA Metal binding pro 43.4 55 0.0012 23.6 4.3 39 69-111 214-254 (287)
116 PF13477 Glyco_trans_4_2: Glyc 42.9 29 0.00064 21.3 2.6 34 2-43 18-51 (139)
117 KOG1053 Glutamate-gated NMDA-t 42.9 14 0.00031 31.4 1.4 54 35-95 687-743 (1258)
118 TIGR01278 DPOR_BchB light-inde 42.6 51 0.0011 26.0 4.3 25 85-112 364-388 (511)
119 PF13419 HAD_2: Haloacid dehal 42.5 67 0.0014 20.1 4.4 23 88-112 154-176 (176)
120 TIGR00215 lpxB lipid-A-disacch 42.3 79 0.0017 23.8 5.2 28 84-112 88-119 (385)
121 TIGR02329 propionate_PrpR prop 42.2 97 0.0021 24.7 5.8 41 67-114 131-171 (526)
122 PF07131 DUF1382: Protein of u 42.2 13 0.00028 20.4 0.7 10 35-44 22-31 (61)
123 PRK15411 rcsA colanic acid cap 42.1 81 0.0017 21.5 4.9 31 84-114 46-85 (207)
124 PHA02542 41 41 helicase; Provi 42.0 65 0.0014 25.3 4.8 44 69-113 286-351 (473)
125 PRK13699 putative methylase; P 41.8 74 0.0016 22.2 4.7 31 86-116 163-195 (227)
126 cd03466 Nitrogenase_NifN_2 Nit 41.7 49 0.0011 25.4 4.0 25 85-112 372-396 (429)
127 TIGR02845 spore_V_AD stage V s 41.6 98 0.0021 23.2 5.4 49 68-118 56-107 (327)
128 cd02965 HyaE HyaE family; HyaE 41.5 86 0.0019 19.4 4.9 42 66-114 47-91 (111)
129 KOG1509 Predicted nucleic acid 41.0 1.2E+02 0.0026 21.1 5.5 63 7-80 8-73 (209)
130 PRK02910 light-independent pro 40.9 60 0.0013 25.7 4.5 25 85-112 362-386 (519)
131 cd03026 AhpF_NTD_C TRX-GRX-lik 40.8 55 0.0012 19.1 3.4 27 84-112 42-71 (89)
132 TIGR01990 bPGM beta-phosphoglu 40.8 1E+02 0.0022 20.0 6.1 23 87-111 161-183 (185)
133 PF14174 YycC: YycC-like prote 40.8 22 0.00049 18.8 1.5 12 98-109 11-22 (53)
134 smart00523 DWA Domain A in dwa 40.3 91 0.002 19.4 4.4 53 59-112 10-63 (109)
135 PLN03171 chalcone synthase-lik 40.3 77 0.0017 24.1 4.9 42 66-109 112-158 (399)
136 PRK14478 nitrogenase molybdenu 40.2 48 0.001 25.9 3.8 24 84-110 392-415 (475)
137 PF05225 HTH_psq: helix-turn-h 39.3 20 0.00043 18.3 1.2 14 98-111 19-32 (45)
138 PRK11133 serB phosphoserine ph 39.1 1.1E+02 0.0024 22.6 5.5 40 68-110 184-223 (322)
139 PRK12404 stage V sporulation p 38.6 87 0.0019 23.5 4.7 47 67-115 59-108 (334)
140 PRK12311 rpsB 30S ribosomal pr 38.5 86 0.0019 23.4 4.7 32 85-116 152-185 (326)
141 cd01965 Nitrogenase_MoFe_beta_ 38.4 70 0.0015 24.5 4.5 26 84-112 370-395 (428)
142 PRK00090 bioD dithiobiotin syn 37.7 97 0.0021 21.0 4.8 29 85-113 103-140 (222)
143 PF12710 HAD: haloacid dehalog 37.7 51 0.0011 21.4 3.3 35 72-109 96-130 (192)
144 PF05889 SLA_LP_auto_ag: Solub 37.5 86 0.0019 24.1 4.6 44 70-117 144-196 (389)
145 COG0160 GabT 4-aminobutyrate a 37.5 2E+02 0.0044 22.5 7.1 44 66-111 205-261 (447)
146 PF12738 PTCB-BRCT: twin BRCT 36.8 46 0.001 17.7 2.5 28 84-111 33-60 (63)
147 cd02996 PDI_a_ERp44 PDIa famil 36.5 92 0.002 18.4 4.6 29 86-116 57-88 (108)
148 cd01965 Nitrogenase_MoFe_beta_ 36.5 70 0.0015 24.5 4.2 32 85-116 223-256 (428)
149 KOG2941 Beta-1,4-mannosyltrans 36.1 34 0.00074 26.1 2.3 35 2-44 34-70 (444)
150 PF07972 Flavodoxin_NdrI: NrdI 36.0 30 0.00066 21.9 1.8 20 92-111 87-106 (122)
151 COG4081 Uncharacterized protei 35.7 19 0.00041 23.2 0.9 18 2-19 26-43 (148)
152 KOG0907 Thioredoxin [Posttrans 35.4 1.1E+02 0.0023 18.7 4.5 39 67-113 40-81 (106)
153 cd01980 Chlide_reductase_Y Chl 35.2 87 0.0019 23.9 4.5 26 84-112 349-374 (416)
154 COG0825 AccA Acetyl-CoA carbox 34.9 37 0.0008 25.0 2.3 18 98-115 142-159 (317)
155 PF02022 Integrase_Zn: Integra 34.8 23 0.00051 17.7 1.0 13 98-110 12-24 (40)
156 cd02950 TxlA TRX-like protein 34.6 1.2E+02 0.0027 19.2 5.2 29 85-113 52-83 (142)
157 TIGR00338 serB phosphoserine p 34.4 95 0.002 20.9 4.3 41 67-110 87-127 (219)
158 TIGR02024 FtcD glutamate formi 34.4 36 0.00079 25.0 2.2 15 98-112 112-126 (298)
159 cd02954 DIM1 Dim1 family; Dim1 34.3 1.2E+02 0.0025 18.9 4.8 41 66-113 32-75 (114)
160 CHL00203 fabH 3-oxoacyl-acyl-c 34.0 86 0.0019 22.8 4.2 43 65-109 227-270 (326)
161 smart00518 AP2Ec AP endonuclea 33.9 37 0.0008 23.9 2.2 20 97-116 88-107 (273)
162 TIGR00313 cobQ cobyric acid sy 33.8 1.4E+02 0.0031 23.3 5.6 41 68-113 110-161 (475)
163 PRK12474 hypothetical protein; 33.8 1.2E+02 0.0026 23.8 5.2 40 68-111 189-234 (518)
164 PF01497 Peripla_BP_2: Peripla 33.7 82 0.0018 21.3 3.9 32 85-116 60-93 (238)
165 PRK14994 SAM-dependent 16S rib 33.3 1.8E+02 0.0039 21.2 5.7 32 90-122 98-129 (287)
166 TIGR00315 cdhB CO dehydrogenas 33.3 1.3E+02 0.0027 20.1 4.5 30 84-113 28-62 (162)
167 cd01916 ACS_1 Acetyl-CoA synth 33.2 56 0.0012 27.2 3.3 31 85-115 265-297 (731)
168 PF13263 PHP_C: PHP-associated 33.1 44 0.00096 17.7 2.0 14 98-111 7-20 (56)
169 PF08546 ApbA_C: Ketopantoate 33.1 15 0.00033 22.7 0.1 19 91-109 93-111 (125)
170 COG1484 DnaC DNA replication p 33.1 22 0.00047 25.3 0.9 27 2-28 127-153 (254)
171 PRK00025 lpxB lipid-A-disaccha 33.0 88 0.0019 22.9 4.2 29 85-113 85-116 (380)
172 TIGR01012 Sa_S2_E_A ribosomal 32.9 72 0.0016 22.0 3.4 28 87-114 111-139 (196)
173 TIGR03600 phage_DnaB phage rep 32.9 1.3E+02 0.0029 22.8 5.2 29 85-113 305-351 (421)
174 cd03466 Nitrogenase_NifN_2 Nit 32.8 88 0.0019 24.0 4.2 33 85-117 222-258 (429)
175 TIGR01286 nifK nitrogenase mol 32.5 90 0.0019 24.8 4.3 25 84-111 436-460 (515)
176 cd01141 TroA_d Periplasmic bin 32.3 1E+02 0.0022 20.1 4.1 29 85-113 69-99 (186)
177 cd03003 PDI_a_ERdj5_N PDIa fam 32.2 1.1E+02 0.0023 17.8 4.2 44 66-116 36-82 (101)
178 PF04760 IF2_N: Translation in 32.1 29 0.00063 18.1 1.1 11 99-109 7-17 (54)
179 cd00316 Oxidoreductase_nitroge 31.9 90 0.002 23.3 4.1 35 85-119 202-237 (399)
180 cd01821 Rhamnogalacturan_acety 31.6 1.5E+02 0.0034 19.5 5.0 21 96-116 136-156 (198)
181 PRK07077 hypothetical protein; 31.6 57 0.0012 23.1 2.8 32 85-116 135-166 (238)
182 PF09314 DUF1972: Domain of un 31.6 33 0.00072 23.3 1.6 36 2-44 28-63 (185)
183 PF07836 DmpG_comm: DmpG-like 31.5 22 0.00048 20.0 0.6 19 90-108 17-35 (66)
184 COG0784 CheY FOG: CheY-like re 31.2 1.2E+02 0.0026 18.0 4.2 32 85-117 51-89 (130)
185 PLN02854 3-ketoacyl-CoA syntha 31.2 2.4E+02 0.0052 22.6 6.4 31 85-115 209-246 (521)
186 PRK11697 putative two-componen 31.1 1.4E+02 0.003 20.2 4.7 33 85-117 47-84 (238)
187 PF10668 Phage_terminase: Phag 31.1 35 0.00075 18.8 1.3 11 98-108 25-35 (60)
188 TIGR02187 GlrX_arch Glutaredox 31.0 1.5E+02 0.0032 20.3 4.8 29 85-113 53-84 (215)
189 PF07611 DUF1574: Protein of u 30.8 45 0.00098 25.1 2.3 21 97-117 256-276 (345)
190 cd01425 RPS2 Ribosomal protein 30.6 1.7E+02 0.0038 19.7 7.7 33 84-116 126-160 (193)
191 PRK05849 hypothetical protein; 30.5 65 0.0014 27.1 3.3 27 85-111 727-755 (783)
192 PTZ00152 cofilin/actin-depolym 30.5 27 0.00058 22.1 0.9 30 70-100 47-81 (122)
193 PLN02377 3-ketoacyl-CoA syntha 29.8 2.6E+02 0.0055 22.3 6.3 50 64-115 174-230 (502)
194 PF00148 Oxidored_nitro: Nitro 29.7 74 0.0016 23.8 3.3 27 85-111 194-221 (398)
195 PTZ00254 40S ribosomal protein 29.7 87 0.0019 22.5 3.4 29 87-115 121-150 (249)
196 PRK04123 ribulokinase; Provisi 29.5 2.7E+02 0.0058 22.0 6.5 59 55-115 410-473 (548)
197 PRK12513 RNA polymerase sigma 29.4 84 0.0018 20.8 3.3 40 67-109 130-169 (194)
198 PF04967 HTH_10: HTH DNA bindi 29.4 43 0.00093 17.9 1.5 13 97-109 25-37 (53)
199 PRK07204 3-oxoacyl-(acyl carri 29.4 1.1E+02 0.0024 22.2 4.2 47 64-112 230-277 (329)
200 cd02963 TRX_DnaJ TRX domain, D 29.3 1.2E+02 0.0026 18.2 3.7 41 68-114 44-87 (111)
201 PRK05634 nucleosidase; Provisi 29.1 44 0.00096 22.5 1.9 29 88-116 127-155 (185)
202 PRK02561 psbF cytochrome b559 29.1 42 0.0009 17.1 1.3 19 102-120 22-40 (44)
203 cd01974 Nitrogenase_MoFe_beta 29.0 1.4E+02 0.003 23.0 4.7 25 85-112 377-401 (435)
204 PLN02891 IMP cyclohydrolase 28.9 66 0.0014 25.8 2.9 27 85-111 485-515 (547)
205 PRK04020 rps2P 30S ribosomal p 28.8 87 0.0019 21.7 3.2 29 86-114 115-145 (204)
206 PRK07164 5'-methylthioadenosin 28.8 41 0.00089 23.4 1.7 31 86-116 154-184 (218)
207 COG0052 RpsB Ribosomal protein 28.7 1.7E+02 0.0036 21.1 4.7 31 86-116 157-189 (252)
208 PRK11475 DNA-binding transcrip 28.6 1.6E+02 0.0035 20.1 4.6 29 85-113 37-75 (207)
209 PF04493 Endonuclease_5: Endon 28.5 84 0.0018 21.8 3.2 39 68-111 77-122 (206)
210 PF13450 NAD_binding_8: NAD(P) 28.1 25 0.00055 19.4 0.5 16 1-16 12-27 (68)
211 cd02962 TMX2 TMX2 family; comp 27.9 1.8E+02 0.0039 19.0 4.8 42 67-114 66-116 (152)
212 PRK00881 purH bifunctional pho 27.9 82 0.0018 25.1 3.3 29 87-115 455-485 (513)
213 PRK10281 hypothetical protein; 27.9 80 0.0017 23.0 3.1 30 85-114 19-51 (299)
214 cd02992 PDI_a_QSOX PDIa family 27.8 1.5E+02 0.0032 18.0 5.5 32 85-116 54-88 (114)
215 cd02986 DLP Dim1 family, Dim1- 27.8 1.6E+02 0.0035 18.4 4.2 41 66-113 32-75 (114)
216 PRK08304 stage V sporulation p 27.8 1.8E+02 0.0039 21.9 4.9 49 68-118 62-113 (337)
217 PRK08296 hypothetical protein; 27.8 72 0.0016 26.0 3.0 27 85-111 547-575 (603)
218 cd01976 Nitrogenase_MoFe_alpha 27.4 96 0.0021 23.8 3.6 27 84-113 368-394 (421)
219 PRK06321 replicative DNA helic 27.4 1.5E+02 0.0032 23.3 4.6 41 70-113 324-386 (472)
220 TIGR00143 hypF [NiFe] hydrogen 27.3 2.9E+02 0.0062 23.1 6.4 30 84-113 414-444 (711)
221 CHL00039 psbF photosystem II p 27.1 51 0.0011 16.2 1.3 18 103-120 18-35 (39)
222 PF05159 Capsule_synth: Capsul 27.1 57 0.0012 23.0 2.2 17 97-113 15-31 (269)
223 PF07498 Rho_N: Rho terminatio 27.1 33 0.0007 17.3 0.7 13 98-110 10-22 (43)
224 COG2874 FlaH Predicted ATPases 26.8 2.1E+02 0.0046 20.3 4.9 22 6-27 54-75 (235)
225 cd03002 PDI_a_MPD1_like PDI fa 26.8 1.4E+02 0.003 17.4 5.0 31 86-116 51-84 (109)
226 cd03806 GT1_ALG11_like This fa 26.7 2.9E+02 0.0062 21.0 7.1 29 85-113 107-136 (419)
227 COG3643 Glutamate formiminotra 26.6 56 0.0012 23.6 2.0 25 89-113 95-127 (302)
228 PF06925 MGDG_synth: Monogalac 26.5 1.9E+02 0.0041 18.8 5.1 13 84-96 88-100 (169)
229 COG3426 Butyrate kinase [Energ 26.5 49 0.0011 24.5 1.7 21 96-116 112-132 (358)
230 cd01968 Nitrogenase_NifE_I Nit 26.4 1.1E+02 0.0024 23.2 3.8 24 85-111 356-379 (410)
231 TIGR01283 nifE nitrogenase mol 26.4 1.3E+02 0.0028 23.3 4.2 26 85-113 395-420 (456)
232 COG2093 DNA-directed RNA polym 26.4 89 0.0019 17.4 2.4 18 88-108 37-54 (64)
233 TIGR01862 N2-ase-Ialpha nitrog 26.4 1.2E+02 0.0026 23.4 4.0 33 85-117 240-273 (443)
234 PRK08506 replicative DNA helic 26.1 1.9E+02 0.0042 22.6 5.1 42 70-113 289-349 (472)
235 PF06056 Terminase_5: Putative 26.1 47 0.001 18.0 1.3 14 96-109 13-27 (58)
236 PRK02551 flavoprotein NrdI; Pr 26.1 30 0.00066 22.8 0.6 21 91-111 108-128 (154)
237 cd01147 HemV-2 Metal binding p 26.0 1.4E+02 0.0031 20.5 4.1 31 85-115 74-107 (262)
238 PF02684 LpxB: Lipid-A-disacch 26.0 3E+02 0.0065 21.0 7.0 47 66-116 67-117 (373)
239 PRK07027 cobalamin biosynthesi 25.9 66 0.0014 20.3 2.1 28 86-113 37-67 (126)
240 TIGR03333 salvage_mtnX 2-hydro 25.8 1.5E+02 0.0031 20.1 4.0 43 65-110 70-112 (214)
241 TIGR01285 nifN nitrogenase mol 25.5 1.3E+02 0.0027 23.3 3.9 33 85-117 236-269 (432)
242 PF07449 HyaE: Hydrogenase-1 e 25.4 1.1E+02 0.0024 18.9 3.0 40 70-116 50-92 (107)
243 cd00019 AP2Ec AP endonuclease 25.2 65 0.0014 22.8 2.2 21 96-116 88-108 (279)
244 PF09419 PGP_phosphatase: Mito 25.1 2.2E+02 0.0047 19.1 5.0 45 68-113 62-113 (168)
245 cd01973 Nitrogenase_VFe_beta_l 25.0 1.2E+02 0.0025 23.7 3.7 34 85-118 228-263 (454)
246 PRK12319 acetyl-CoA carboxylas 24.9 68 0.0015 23.0 2.2 19 98-116 90-108 (256)
247 PRK10481 hypothetical protein; 24.9 2.5E+02 0.0055 19.7 5.1 45 69-117 170-217 (224)
248 PRK12880 3-oxoacyl-(acyl carri 24.8 1.5E+02 0.0033 22.0 4.2 45 63-109 241-286 (353)
249 TIGR00747 fabH 3-oxoacyl-(acyl 24.6 1.6E+02 0.0034 21.2 4.2 44 64-109 219-263 (318)
250 cd06267 PBP1_LacI_sugar_bindin 24.6 2.2E+02 0.0048 19.0 5.2 31 85-115 55-87 (264)
251 TIGR00789 flhB_rel flhB C-term 24.6 68 0.0015 18.8 1.9 26 86-111 20-45 (82)
252 PRK00941 acetyl-CoA decarbonyl 24.5 99 0.0021 26.0 3.3 32 85-116 302-335 (781)
253 cd07984 LPLAT_LABLAT-like Lyso 24.4 2.1E+02 0.0045 18.6 4.6 43 68-114 78-138 (192)
254 PRK07773 replicative DNA helic 24.4 1.8E+02 0.0038 24.9 4.9 29 85-113 327-374 (886)
255 TIGR02015 BchY chlorophyllide 24.4 1.5E+02 0.0033 22.8 4.2 25 84-111 354-378 (422)
256 TIGR01544 HAD-SF-IE haloacid d 24.3 1.1E+02 0.0023 22.3 3.2 39 66-107 122-160 (277)
257 PF07788 DUF1626: Protein of u 24.3 87 0.0019 17.8 2.2 21 87-107 48-69 (70)
258 PRK13582 thrH phosphoserine ph 24.3 88 0.0019 20.7 2.7 39 67-109 70-108 (205)
259 cd01966 Nitrogenase_NifN_1 Nit 24.2 1.3E+02 0.0029 23.0 3.8 32 85-116 225-257 (417)
260 TIGR00173 menD 2-succinyl-5-en 24.1 2.1E+02 0.0045 21.9 4.9 41 69-113 200-245 (432)
261 CHL00067 rps2 ribosomal protei 24.0 1.5E+02 0.0033 20.8 3.8 31 85-115 161-193 (230)
262 CHL00198 accA acetyl-CoA carbo 24.0 72 0.0016 23.8 2.3 18 98-115 146-163 (322)
263 smart00550 Zalpha Z-DNA-bindin 23.9 51 0.0011 18.3 1.2 12 98-109 25-36 (68)
264 PRK05724 acetyl-CoA carboxylas 23.7 72 0.0016 23.8 2.2 18 98-115 143-160 (319)
265 TIGR00824 EIIA-man PTS system, 23.5 1.9E+02 0.0041 17.8 4.1 32 69-104 47-78 (116)
266 TIGR03636 L23_arch archaeal ri 23.5 53 0.0011 19.0 1.2 12 96-107 65-76 (77)
267 cd06300 PBP1_ABC_sugar_binding 23.4 2.4E+02 0.0053 19.2 4.9 30 85-114 60-93 (272)
268 TIGR01333 cyt_b559_beta cytoch 23.3 62 0.0013 16.3 1.3 19 102-120 21-39 (43)
269 PF01890 CbiG_C: Cobalamin syn 23.3 74 0.0016 19.9 2.0 20 96-115 48-67 (121)
270 TIGR02950 SigM_subfam RNA poly 23.3 2E+02 0.0043 18.0 4.3 38 68-109 97-135 (154)
271 smart00851 MGS MGS-like domain 23.3 1.6E+02 0.0035 16.9 4.3 27 84-110 54-89 (90)
272 TIGR00379 cobB cobyrinic acid 23.3 2.2E+02 0.0047 22.1 4.9 31 85-115 77-119 (449)
273 PRK00784 cobyric acid synthase 23.2 2E+02 0.0044 22.6 4.7 30 85-114 125-165 (488)
274 PRK09177 xanthine-guanine phos 23.1 2.2E+02 0.0049 18.5 5.6 21 90-110 38-58 (156)
275 KOG3321 Mitochondrial ribosoma 23.1 25 0.00054 23.5 -0.2 24 90-113 60-83 (175)
276 TIGR00355 purH phosphoribosyla 23.1 2.2E+02 0.0048 22.8 4.8 27 85-111 451-479 (511)
277 cd07019 S49_SppA_1 Signal pept 23.0 2.4E+02 0.0052 19.2 4.7 45 70-117 26-81 (211)
278 PRK09258 3-oxoacyl-(acyl carri 22.8 2E+02 0.0043 20.9 4.5 43 65-109 240-283 (338)
279 cd00830 KAS_III Ketoacyl-acyl 22.8 1.7E+02 0.0037 20.9 4.1 47 64-112 223-270 (320)
280 PRK14476 nitrogenase molybdenu 22.7 95 0.0021 24.1 2.8 28 85-112 236-263 (455)
281 TIGR00513 accA acetyl-CoA carb 22.6 78 0.0017 23.5 2.3 18 98-115 143-160 (316)
282 cd02997 PDI_a_PDIR PDIa family 22.6 1.6E+02 0.0035 16.7 4.1 18 98-115 64-84 (104)
283 cd06367 PBP1_iGluR_NMDA N-term 22.6 2.3E+02 0.005 20.7 4.8 33 84-116 62-100 (362)
284 PRK01060 endonuclease IV; Prov 22.6 81 0.0017 22.3 2.3 20 97-116 93-112 (281)
285 PRK05963 3-oxoacyl-(acyl carri 22.5 1.7E+02 0.0038 21.1 4.1 47 64-112 227-274 (326)
286 cd06282 PBP1_GntR_like_2 Ligan 22.5 2.5E+02 0.0055 18.9 4.9 30 85-114 55-87 (266)
287 TIGR01860 VNFD nitrogenase van 22.5 1.2E+02 0.0027 23.6 3.4 23 85-110 397-419 (461)
288 cd00006 PTS_IIA_man PTS_IIA, P 22.5 2E+02 0.0043 17.7 4.3 33 69-105 46-78 (122)
289 cd06313 PBP1_ABC_sugar_binding 22.4 2.6E+02 0.0055 19.4 4.8 30 85-114 55-88 (272)
290 PRK14433 acylphosphatase; Prov 22.3 75 0.0016 18.7 1.8 27 88-114 9-36 (87)
291 PRK07979 acetolactate synthase 22.2 2.7E+02 0.0059 22.2 5.4 41 68-111 194-239 (574)
292 cd06278 PBP1_LacI_like_2 Ligan 22.2 2.5E+02 0.0053 19.0 4.7 30 85-114 54-85 (266)
293 COG2761 FrnE Predicted dithiol 21.9 50 0.0011 23.3 1.1 13 88-100 9-21 (225)
294 cd02973 TRX_GRX_like Thioredox 21.8 1.4E+02 0.003 15.7 4.4 27 84-112 29-58 (67)
295 PLN02326 3-oxoacyl-[acyl-carri 21.8 1.8E+02 0.004 21.8 4.2 44 64-109 280-324 (379)
296 cd01977 Nitrogenase_VFe_alpha 21.7 1.9E+02 0.0042 22.0 4.3 32 85-116 211-243 (415)
297 PRK09604 UGMP family protein; 21.6 2.7E+02 0.006 20.6 5.0 55 65-121 54-118 (332)
298 PRK12677 xylose isomerase; Pro 21.6 85 0.0018 23.9 2.3 19 97-115 118-136 (384)
299 TIGR03468 HpnG hopanoid-associ 21.6 67 0.0014 22.1 1.7 30 86-115 125-154 (212)
300 PF04127 DFP: DNA / pantothena 21.6 40 0.00086 22.8 0.5 17 2-18 37-53 (185)
301 PF03853 YjeF_N: YjeF-related 21.4 41 0.0009 22.2 0.6 15 1-15 45-59 (169)
302 PRK13608 diacylglycerol glucos 21.4 2.2E+02 0.0047 21.3 4.5 32 84-115 103-136 (391)
303 PF03808 Glyco_tran_WecB: Glyc 21.3 2.5E+02 0.0055 18.5 4.9 43 71-118 91-137 (172)
304 PF03054 tRNA_Me_trans: tRNA m 21.2 83 0.0018 23.8 2.2 21 98-118 54-74 (356)
305 cd02998 PDI_a_ERp38 PDIa famil 21.2 1.8E+02 0.0038 16.6 4.0 43 68-114 38-83 (105)
306 PF09339 HTH_IclR: IclR helix- 21.1 59 0.0013 16.7 1.1 12 98-109 21-32 (52)
307 PRK03011 butyrate kinase; Prov 21.1 88 0.0019 23.6 2.3 20 97-116 112-131 (358)
308 cd06320 PBP1_allose_binding Pe 21.0 2.3E+02 0.0051 19.4 4.4 30 85-114 57-90 (275)
309 PF07453 NUMOD1: NUMOD1 domain 21.0 71 0.0015 15.1 1.3 15 95-109 16-30 (37)
310 PRK12879 3-oxoacyl-(acyl carri 21.0 1.9E+02 0.0041 20.8 4.0 44 64-109 225-269 (325)
311 cd01424 MGS_CPS_II Methylglyox 21.0 2E+02 0.0044 17.2 4.4 27 84-110 66-99 (110)
312 PRK07282 acetolactate synthase 21.0 2.3E+02 0.0049 22.6 4.7 41 69-113 199-245 (566)
313 TIGR02932 vnfK_nitrog V-contai 20.9 1.8E+02 0.0039 22.7 4.0 33 85-117 232-266 (457)
314 cd00984 DnaB_C DnaB helicase C 20.9 2.2E+02 0.0049 19.4 4.2 29 85-113 123-170 (242)
315 cd02989 Phd_like_TxnDC9 Phosdu 20.9 2.1E+02 0.0045 17.3 4.6 39 67-113 41-82 (113)
316 PF01968 Hydantoinase_A: Hydan 20.8 1E+02 0.0022 22.4 2.5 27 86-112 242-269 (290)
317 PF01261 AP_endonuc_2: Xylose 20.8 94 0.002 20.4 2.3 18 98-115 76-93 (213)
318 PLN02285 methionyl-tRNA formyl 20.6 3.3E+02 0.0071 20.3 5.2 43 69-111 21-73 (334)
319 COG0803 LraI ABC-type metal io 20.4 2.5E+02 0.0054 20.4 4.5 42 68-113 228-271 (303)
320 KOG1014 17 beta-hydroxysteroid 20.4 45 0.00097 24.7 0.6 15 1-15 66-80 (312)
321 cd04955 GT1_like_6 This family 20.4 54 0.0012 23.4 1.0 36 1-43 25-60 (363)
322 PRK05878 pyruvate phosphate di 20.3 1.7E+02 0.0036 23.5 3.7 27 85-111 399-427 (530)
323 PRK08979 acetolactate synthase 20.3 3.1E+02 0.0068 21.9 5.4 41 68-112 194-240 (572)
324 PRK05265 pyridoxine 5'-phospha 20.2 3.4E+02 0.0073 19.4 5.3 48 67-118 112-159 (239)
325 cd01971 Nitrogenase_VnfN_like 20.2 1.9E+02 0.0042 22.1 4.0 28 85-112 209-237 (427)
326 PF07355 GRDB: Glycine/sarcosi 20.0 3.1E+02 0.0068 20.8 4.9 27 85-111 80-116 (349)
No 1
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.93 E-value=1.5e-25 Score=168.59 Aligned_cols=117 Identities=16% Similarity=0.291 Sum_probs=94.7
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCC--cccccHHHHHHHHHHHchHHHHHHHHHhh
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETW--EDRSELGKLTESLMRVMPRKREELIKDSN 78 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 78 (125)
||+|++||++|||++|+.|.+++... ..++|+|+.+|+|+|++ +...+...++..+.+.+.++++++|+++.
T Consensus 26 Ak~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (449)
T PLN02173 26 CKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAGSVPEYLQNFKTFGSKTVADIIRKHQ 99 (449)
T ss_pred HHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCcccccccCHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 68999999999999999987665321 11369999999999873 22334667777777788999999998875
Q ss_pred hcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 79 ARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 79 ~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
.++ +|++|||+|+|++|+.+||+++|||+|+|||++|+.+++++|
T Consensus 100 ~~~--~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 100 STD--NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred ccC--CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 322 456999999999999999999999999999999999887763
No 2
>PLN02555 limonoid glucosyltransferase
Probab=99.92 E-value=9e-25 Score=165.59 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=94.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhh---hh--ccccCCCceEEeecCCCCCCc-ccccHHHHHHHHHHHchHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNIL---EE--KNYVLDQIHLISIPDGLETWE-DRSELGKLTESLMRVMPRKREELI 74 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~---~~--~~~~~~~i~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 74 (125)
||+|++||+.|||++|+.|+.++.+.. +. .......++|..+|+|+|++. ...+...++..+...+..+++++|
T Consensus 28 A~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~~~~~~~~~~~~~~~~~l~~~l 107 (480)
T PLN02555 28 GKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQDLDLYLPQLELVGKREIPNLV 107 (480)
T ss_pred HHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccccCHHHHHHHHHHhhhHHHHHHH
Confidence 689999999999999999887664311 10 000112478888889987652 223455567767667888999999
Q ss_pred HHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 75 KDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 75 ~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+++..++ +|++|||+|+|++|+.+||+++|||+++|||++|+++++++|
T Consensus 108 ~~~~~~~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~ 156 (480)
T PLN02555 108 KRYAEQG--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYH 156 (480)
T ss_pred HHHhccC--CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHH
Confidence 8875332 567999999999999999999999999999999999998875
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.92 E-value=1.9e-24 Score=162.88 Aligned_cols=119 Identities=16% Similarity=0.246 Sum_probs=92.5
Q ss_pred Cccccc-CCCEEEEEeCccc-hHHHhhhhhhccccCCCceEEeecCCCCCCc-c-cccHHHHHHHHHHHchHHHHHHHHH
Q 039753 1 SQWLVK-HGFTITLSNTEYN-HRQVMNILEEKNYVLDQIHLISIPDGLETWE-D-RSELGKLTESLMRVMPRKREELIKD 76 (125)
Q Consensus 1 a~~L~~-~G~~VT~v~t~~~-~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (125)
||+|++ ||++|||++|+.| +.++.+.. ...++|+|+.+|||+|++. . ..+...++..+...+.+++++++++
T Consensus 24 a~~La~~~G~~vT~v~t~~~~~~~~~~~~----~~~~~i~~~~i~dglp~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 99 (455)
T PLN02152 24 ARRLIKTTGTRVTFATCLSVIHRSMIPNH----NNVENLSFLTFSDGFDDGVISNTDDVQNRLVNFERNGDKALSDFIEA 99 (455)
T ss_pred HHHHhhCCCcEEEEEeccchhhhhhhccC----CCCCCEEEEEcCCCCCCccccccccHHHHHHHHHHhccHHHHHHHHH
Confidence 578986 7999999999976 33222111 1123699999999988752 2 3445556666667888999999998
Q ss_pred hhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 77 SNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 77 l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+..++ +|++|||+|+|++|+.+||+|+|||++.|||++|+++++++|
T Consensus 100 l~~~~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~ 146 (455)
T PLN02152 100 NLNGD--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYN 146 (455)
T ss_pred hhccC--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 75332 467999999999999999999999999999999999999874
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.92 E-value=1.7e-24 Score=163.22 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=92.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-ccccHHHHHHHHHHHchHHHHHHHHHhhh
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-DRSELGKLTESLMRVMPRKREELIKDSNA 79 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 79 (125)
||+|++||++|||++|+.|+.+. . ...++|+|+.+|+|+|++. +..+...++..+.+.+...++++|+++..
T Consensus 28 Ak~La~~G~~VT~v~T~~n~~~~--~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 100 (451)
T PLN02410 28 AKTLHLKGFSITIAQTKFNYFSP--S-----DDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNKECQVSFKDCLGQLVL 100 (451)
T ss_pred HHHHHcCCCEEEEEeCccccccc--c-----cCCCCeEEEeCCCCCCcccccccCHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 68999999999999999886321 1 1113699999999998642 22234456666766788899999988753
Q ss_pred cCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 80 RETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 80 ~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+.+ ++++|||+|+|++|+.+||+++|||+|+|||++|+++++++|
T Consensus 101 ~~~-~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~ 145 (451)
T PLN02410 101 QQG-NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSV 145 (451)
T ss_pred ccC-CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHH
Confidence 222 578999999999999999999999999999999999988763
No 5
>PLN02562 UDP-glycosyltransferase
Probab=99.91 E-value=7e-24 Score=159.89 Aligned_cols=117 Identities=22% Similarity=0.365 Sum_probs=92.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhc
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDSNAR 80 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (125)
||+|++||++||+++|+.|+.++.+... ..++|+|+.+|++++++. ..+...++..+...+.+.++++++++...
T Consensus 27 Ak~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~~-~~~~~~l~~a~~~~~~~~l~~ll~~l~~~ 101 (448)
T PLN02562 27 ASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDDP-PRDFFSIENSMENTMPPQLERLLHKLDED 101 (448)
T ss_pred HHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCCc-cccHHHHHHHHHHhchHHHHHHHHHhcCC
Confidence 6889999999999999998876654321 113699999998876431 22344555555546889999999887532
Q ss_pred CCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 81 ETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 81 ~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+|++|||+|+|++|+.++|+|+|||+|+|||++|+++++++|
T Consensus 102 ---~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~ 143 (448)
T PLN02562 102 ---GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQA 143 (448)
T ss_pred ---CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHH
Confidence 367999999999999999999999999999999999888753
No 6
>PLN02534 UDP-glycosyltransferase
Probab=99.91 E-value=1e-23 Score=160.19 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=87.7
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeec-----CCCCCC-cccc-----cHHHHHHHHHHHchHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIP-----DGLETW-EDRS-----ELGKLTESLMRVMPRK 69 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp-----~~~~~~-~~~~-----~~~~~~~~~~~~~~~~ 69 (125)
||+|++||+.|||++|+.|+.++.+...........|+|+.+| ||+|++ +... +....+....+.++..
T Consensus 29 Ak~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (491)
T PLN02534 29 ARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLDTLPSRDLLRKFYDAVDKLQQP 108 (491)
T ss_pred HHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccccCCcHHHHHHHHHHHHHhHHH
Confidence 5889999999999999999876654332110111249999998 688765 2211 1222233334467788
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
++++|++. + .+|+|||+|+|++|+.+||+++|||+|+|||++|+++++++
T Consensus 109 l~~lL~~~---~--~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 109 LERFLEQA---K--PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred HHHHHHhc---C--CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 88888754 1 47899999999999999999999999999999999998754
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.91 E-value=8e-24 Score=160.51 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=87.2
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC----CCCCCc-cccc----HHHHHHHHHHHchHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD----GLETWE-DRSE----LGKLTESLMRVMPRKRE 71 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~----~~~~~~-~~~~----~~~~~~~~~~~~~~~~~ 71 (125)
||+|++||++|||++|+.|+.++.+... ..++|+++.+|. ++|++. +..+ ....+......+.++++
T Consensus 30 Ak~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~~~~~~~~a~~~~~~~~~ 105 (477)
T PLN02863 30 THRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVKDLPPSGFPLMIHALGELYAPLL 105 (477)
T ss_pred HHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChhhcchhhHHHHHHHHHHhHHHHH
Confidence 6899999999999999999987754321 124688887652 566552 2112 22234344456777888
Q ss_pred HHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 72 ELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 72 ~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
++++++. .+|+|||+|+|++|+.+||+++|||+++|||++|+++++|+|
T Consensus 106 ~~l~~~~-----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 106 SWFRSHP-----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred HHHHhCC-----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 8887641 467999999999999999999999999999999999999875
No 8
>PLN02670 transferase, transferring glycosyl groups
Probab=99.90 E-value=1.5e-23 Score=158.56 Aligned_cols=114 Identities=22% Similarity=0.281 Sum_probs=88.5
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeec----CCCCCCc-ccccH----HHHHHHHHHHchHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIP----DGLETWE-DRSEL----GKLTESLMRVMPRKRE 71 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp----~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~ 71 (125)
||+|++||++|||++|+.|+.++..... ...++|+++.+| +|+|++. ...+. ..++....+.+++.++
T Consensus 27 Ak~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (472)
T PLN02670 27 SKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLLKKAFDLLEPPLT 103 (472)
T ss_pred HHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccccccchhhHHHHHHHHHHhHHHHH
Confidence 6899999999999999999877653211 112359999998 6787652 22222 1344455567788888
Q ss_pred HHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 72 ELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 72 ~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
++++++ +++|||+|+|++|+.+||+++|||+++|||++|+++++++
T Consensus 104 ~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~ 149 (472)
T PLN02670 104 TFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIG 149 (472)
T ss_pred HHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHh
Confidence 888763 5799999999999999999999999999999999999875
No 9
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.89 E-value=7.2e-23 Score=155.64 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=83.6
Q ss_pred CcccccCC--CEEEEEeCccchHHHhh-h--hhhcc-ccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHH
Q 039753 1 SQWLVKHG--FTITLSNTEYNHRQVMN-I--LEEKN-YVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELI 74 (125)
Q Consensus 1 a~~L~~~G--~~VT~v~t~~~~~~~~~-~--~~~~~-~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (125)
||+|++|| ++|||++|+.|+.++.+ . ..... ...++|+|+.+|++.+++....+... +...+...+++.+
T Consensus 23 Ak~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~----~~~~~~~~~~~~l 98 (481)
T PLN02554 23 AKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDPTFQS----YIDNQKPKVRDAV 98 (481)
T ss_pred HHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccchHHHH----HHHHHHHHHHHHH
Confidence 68999998 99999999998764321 1 11000 11236999999987643211112222 2234556666666
Q ss_pred HHhhhc---CCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 75 KDSNAR---ETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 75 ~~l~~~---~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+++..+ ...+|++|||+|+|++|+.+||+++|||+|+|||++|+++++++|
T Consensus 99 ~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 99 AKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred HHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 665321 111456999999999999999999999999999999999999875
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=99.89 E-value=1.5e-22 Score=153.83 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=88.0
Q ss_pred CcccccCC----CEEEEEeCccchH----HHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHH
Q 039753 1 SQWLVKHG----FTITLSNTEYNHR----QVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREE 72 (125)
Q Consensus 1 a~~L~~~G----~~VT~v~t~~~~~----~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
||+|++|| +.|||++|+.+.. ++.+.........++|+|+.+|++.++. +..+...++..+.+.+.+++++
T Consensus 24 Ak~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~-~~e~~~~~~~~~~~~~~~~l~~ 102 (480)
T PLN00164 24 GKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT-DAAGVEEFISRYIQLHAPHVRA 102 (480)
T ss_pred HHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC-ccccHHHHHHHHHHhhhHHHHH
Confidence 68899986 8999999987632 3332211100111259999999864322 1123335566566678889999
Q ss_pred HHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 73 LIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 73 ~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+|+++. ++++|||+|+|++|+.+||+++|||++.|||++|+++++++|
T Consensus 103 ~L~~l~-----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 103 AIAGLS-----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred HHHhcC-----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 998762 468999999999999999999999999999999999999875
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.89 E-value=1.7e-22 Score=153.08 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=85.9
Q ss_pred Ccccc-cCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC----CCCCCcccccHHHHHHHHHHHchHHHHHHHH
Q 039753 1 SQWLV-KHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD----GLETWEDRSELGKLTESLMRVMPRKREELIK 75 (125)
Q Consensus 1 a~~L~-~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (125)
||+|+ +||++|||++|+.|+.++.+... ..++|+++.+|+ ++|+.. .+....+....+.+.+.++++++
T Consensus 26 Ak~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~~--~~~~~~~~~~~~~~~~~~~~~l~ 99 (481)
T PLN02992 26 GKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDPS--AHVVTKIGVIMREAVPTLRSKIA 99 (481)
T ss_pred HHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCCC--ccHHHHHHHHHHHhHHHHHHHHH
Confidence 58898 79999999999999866533211 113699999985 554221 12222333444567788999998
Q ss_pred HhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 76 DSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 76 ~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
++. .+|+|||+|+|++|+.+||+++|||+|+|||++|+++++++|
T Consensus 100 ~~~-----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 144 (481)
T PLN02992 100 EMH-----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIY 144 (481)
T ss_pred hcC-----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHh
Confidence 762 468999999999999999999999999999999999987653
No 12
>PLN03004 UDP-glycosyltransferase
Probab=99.88 E-value=4.6e-22 Score=149.93 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=85.5
Q ss_pred CcccccCC----CEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCC-c-cc-ccHHHHHHHHHHHchHHHHHH
Q 039753 1 SQWLVKHG----FTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETW-E-DR-SELGKLTESLMRVMPRKREEL 73 (125)
Q Consensus 1 a~~L~~~G----~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~ 73 (125)
||+|++|| ++||+++|+.|...+.+.........++|+|+.+|++.+.+ . .. .+....+..+.+.+..+++++
T Consensus 24 A~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (451)
T PLN03004 24 GKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSRHHHESLLLEILCFSNPSVHRT 103 (451)
T ss_pred HHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccccCHHHHHHHHHHhhhHHHHHH
Confidence 68899998 55555666665543322111100112469999999876422 1 11 233334444555788899999
Q ss_pred HHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 74 IKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 74 l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
|+++.. + +|++|||+|+|++|+.+||+++|||+|+|||++|+++++++|
T Consensus 104 l~~l~~-~--~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 104 LFSLSR-N--FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred HHhcCC-C--CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 988732 1 467999999999999999999999999999999999999875
No 13
>PLN02210 UDP-glucosyl transferase
Probab=99.88 E-value=3.7e-22 Score=150.83 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=86.9
Q ss_pred Ccc--cccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHhh
Q 039753 1 SQW--LVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDSN 78 (125)
Q Consensus 1 a~~--L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 78 (125)
||+ |++||++|||++|+.|+.++... . ...+.+++..+|+|+|++.. .+...++..+.+.+.+.+++++++
T Consensus 29 a~~L~L~~~G~~VT~v~t~~~~~~~~~~-~---~~~~~~~~~~~~~glp~~~~-~~~~~~~~~~~~~~~~~l~~~l~~-- 101 (456)
T PLN02210 29 AKHLSLSSKNLHFTLATTEQARDLLSTV-E---KPRRPVDLVFFSDGLPKDDP-RAPETLLKSLNKVGAKNLSKIIEE-- 101 (456)
T ss_pred HHHHHhhcCCcEEEEEeccchhhhhccc-c---CCCCceEEEECCCCCCCCcc-cCHHHHHHHHHHhhhHHHHHHHhc--
Confidence 467 56899999999999988765321 1 11245888888988886531 234456666665666677777754
Q ss_pred hcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 79 ARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 79 ~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
.+|+|||+|++++|+.+||+++|||+++||+++|+++++++|
T Consensus 102 -----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~ 143 (456)
T PLN02210 102 -----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYR 143 (456)
T ss_pred -----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHh
Confidence 368999999999999999999999999999999999998764
No 14
>PLN02207 UDP-glycosyltransferase
Probab=99.88 E-value=8.1e-22 Score=149.11 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=82.5
Q ss_pred CcccccCC--CEEEEEeCccchH-HHhhhhhhccccCCCceEEeecCCCC-CC-cccccHHHHHHHHHHHchHH----HH
Q 039753 1 SQWLVKHG--FTITLSNTEYNHR-QVMNILEEKNYVLDQIHLISIPDGLE-TW-EDRSELGKLTESLMRVMPRK----RE 71 (125)
Q Consensus 1 a~~L~~~G--~~VT~v~t~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~-~~-~~~~~~~~~~~~~~~~~~~~----~~ 71 (125)
||+|++|| ++|||++|+.|+. .+...........++|+|+.||++.+ ++ +...+...++..+.+.+.+. ++
T Consensus 24 A~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (468)
T PLN02207 24 ARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQSVEAYVYDVIEKNIPLVRNIVM 103 (468)
T ss_pred HHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccCHHHHHHHHHHhcchhHHHHHH
Confidence 58899998 9999999998763 22221111001123699999997432 11 11223444444444456444 44
Q ss_pred HHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 72 ELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 72 ~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+++++...++ +|++|||+|+|++|+.+||+++|||+++|||++|+++++++|
T Consensus 104 ~~l~~~~~~~--~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~ 155 (468)
T PLN02207 104 DILSSLALDG--VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQY 155 (468)
T ss_pred HHHHHhccCC--CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 4444332111 457999999999999999999999999999999999998764
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.87 E-value=1.2e-21 Score=148.24 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=92.6
Q ss_pred CcccccC--CCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-ccccHHHHHHHHHHHchHHHHHHHHHh
Q 039753 1 SQWLVKH--GFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-DRSELGKLTESLMRVMPRKREELIKDS 77 (125)
Q Consensus 1 a~~L~~~--G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l 77 (125)
||+|++| |+.|||++|+.++.++..... .++|+|+.+|+++|++. ...+...++..+.+.+...++++++++
T Consensus 31 A~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (459)
T PLN02448 31 CKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPNVIPSELVRAADFPGFLEAVMTKMEAPFEQLLDRL 105 (459)
T ss_pred HHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCCCCCCccccccCHHHHHHHHHHHhHHHHHHHHHhc
Confidence 5789998 999999999999877654321 24799999998776542 223455666666667888999999876
Q ss_pred hhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 78 NARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 78 ~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
. .+++|||+|++++|+.++|+++|||+|.||+++|+++++++|
T Consensus 106 ~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~ 148 (459)
T PLN02448 106 E-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYH 148 (459)
T ss_pred C-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHH
Confidence 3 368999999999999999999999999999999998887754
No 16
>PLN00414 glycosyltransferase family protein
Probab=99.86 E-value=2e-21 Score=146.47 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=80.7
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeec----CCCCCCc-ccccH----HHHHHHHHHHchHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIP----DGLETWE-DRSEL----GKLTESLMRVMPRKRE 71 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp----~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~ 71 (125)
||+|++||++|||++|+.++.++.+.. ...++|+|+.+| +|+|++. ...+. ...+....+.+.+.++
T Consensus 25 Ak~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~~~~~~~a~~~l~~~l~ 100 (446)
T PLN00414 25 ANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVDGLPFGAETASDLPNSTKKPIFDAMDLLRDQIE 100 (446)
T ss_pred HHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 689999999999999998876654331 112358886654 6777652 22222 1122223334555666
Q ss_pred HHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 72 ELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 72 ~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
+++++ .+|+|||+|+ ++|+.+||+++|||+++|||++|+++++++|
T Consensus 101 ~~L~~-------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 101 AKVRA-------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred HHHhc-------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 65543 2579999995 8999999999999999999999999999875
No 17
>PLN02764 glycosyltransferase family protein
Probab=99.86 E-value=4.2e-21 Score=144.63 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=83.9
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeec--CCCCCC-cccc----cHHHHHHHHHHHchHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIP--DGLETW-EDRS----ELGKLTESLMRVMPRKREEL 73 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 73 (125)
||+|++||++|||++|+.|+.++.+. . .......++++++| +|+|++ +... +....+....+.++++++++
T Consensus 26 Ak~La~~g~~vT~~tt~~~~~~~~~~-~-~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~ 103 (453)
T PLN02764 26 ANKLAEKGHTVTFLLPKKALKQLEHL-N-LFPHNIVFRSVTVPHVDGLPVGTETVSEIPVTSADLLMSAMDLTRDQVEVV 103 (453)
T ss_pred HHHHHhCCCEEEEEeCcchhhhhccc-c-cCCCCceEEEEECCCcCCCCCcccccccCChhHHHHHHHHHHHhHHHHHHH
Confidence 58899999999999999987665432 1 00111137777787 688766 3211 11223444445677888888
Q ss_pred HHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 74 IKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 74 l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
|+++ +++|||+|+ ++|+.+||+++|||+|.|||++|+++++++
T Consensus 104 l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~ 146 (453)
T PLN02764 104 VRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASML 146 (453)
T ss_pred HHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHh
Confidence 8764 569999995 999999999999999999999999999875
No 18
>PLN03015 UDP-glucosyl transferase
Probab=99.85 E-value=1.2e-20 Score=142.59 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=85.2
Q ss_pred CcccccC-CCEEEEEeCccchHHHhhhh-hhccccCCCceEEeecCCCCCCc-c-cccHHHHHHHHHHHchHHHHHHHHH
Q 039753 1 SQWLVKH-GFTITLSNTEYNHRQVMNIL-EEKNYVLDQIHLISIPDGLETWE-D-RSELGKLTESLMRVMPRKREELIKD 76 (125)
Q Consensus 1 a~~L~~~-G~~VT~v~t~~~~~~~~~~~-~~~~~~~~~i~~~~lp~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (125)
||+|++| |++|||++|+.++.++.... .......++|+++.+|++..++- . ..+....+....+.+.++++++|++
T Consensus 24 Ak~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (470)
T PLN03015 24 GNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATIFTKMVVKMRAMKPAVRDAVKS 103 (470)
T ss_pred HHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccHHHHHHHHHHhchHHHHHHHHh
Confidence 5889976 99999999998775542110 00000112599999996322110 1 0133323344445789999999988
Q ss_pred hhhcCCCCCeeEEEecCCcccHHHHHHHhCCc-eEEEcchhHHHHHhhhC
Q 039753 77 SNARETHENITYVIADGNVEQGIKVAEKLNIQ-SAAFWPAAAAVLALNCI 125 (125)
Q Consensus 77 l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP-~~~f~t~~a~~~~~~~h 125 (125)
+. .+|+|||+|+|++|+.+||+|+||| +++|++++|+.+++++|
T Consensus 104 l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~ 148 (470)
T PLN03015 104 MK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVY 148 (470)
T ss_pred cC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHh
Confidence 74 3679999999999999999999999 69999999999887764
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.85 E-value=1.4e-20 Score=142.98 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=82.5
Q ss_pred CcccccCCC---EEEEEeCccchH-HHhhhhhhccccCCCceEEeecCCC-CCCcc--cccHHHHHHHHHHHchHHHHHH
Q 039753 1 SQWLVKHGF---TITLSNTEYNHR-QVMNILEEKNYVLDQIHLISIPDGL-ETWED--RSELGKLTESLMRVMPRKREEL 73 (125)
Q Consensus 1 a~~L~~~G~---~VT~v~t~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 73 (125)
||+|++||. .||+++|+.+.. .............++|+|+.||++. |++.. .......+..+...+..+++++
T Consensus 24 Ak~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (475)
T PLN02167 24 AKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFVKASEAYILEFVKKMVPLVRDA 103 (475)
T ss_pred HHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccccccchHHHHHHHHHHHHHHHHHH
Confidence 689999993 577777765432 1111111100112469999999764 22211 1122223344445677788888
Q ss_pred HHHhhhc---CCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 74 IKDSNAR---ETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 74 l~~l~~~---~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
++++..+ ++.+|++|||+|+|++|+.+||+|+|||+++|||++|+++++++|
T Consensus 104 l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 104 LSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred HHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 8776421 111267999999999999999999999999999999999998764
No 20
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.83 E-value=4.3e-20 Score=140.59 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=76.9
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCC----CceEEeec---CCCCCCc-ccc--------cHHHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLD----QIHLISIP---DGLETWE-DRS--------ELGKLTESLMR 64 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~----~i~~~~lp---~~~~~~~-~~~--------~~~~~~~~~~~ 64 (125)
||+|++||++|||++|+.+..++.+.........+ .+....+| +++|++. ... +...++..+.
T Consensus 26 Ak~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~~~~~~~~~~~~~~~~~~~~- 104 (482)
T PLN03007 26 AKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENVDFITSNNNDDSGDLFLKFL- 104 (482)
T ss_pred HHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcccccccccccccchHHHHHHHH-
Confidence 58899999999999999988766543211000011 34445556 4676541 111 1112232222
Q ss_pred HchHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 65 VMPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 65 ~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
.....+.+.++++..+ .+++|||+|++++|+.+||+++|||+|+|||++|+++++++
T Consensus 105 ~~~~~l~~~l~~~l~~---~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 105 FSTKYFKDQLEKLLET---TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred HHHHHHHHHHHHHHhc---CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 1222333333333222 36899999999999999999999999999999999888765
No 21
>PLN02208 glycosyltransferase family protein
Probab=99.82 E-value=8.1e-20 Score=137.66 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=78.1
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEee--c--CCCCCCc-ccccHH----HHHHHHHHHchHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISI--P--DGLETWE-DRSELG----KLTESLMRVMPRKRE 71 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~l--p--~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 71 (125)
||+|++||++|||++|+.++.++.+.. ...++++++.+ | +++|++. ...+.. .++....+.+.+.++
T Consensus 25 Ak~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~l~~~~~~~~~~~~~~l~ 100 (442)
T PLN02208 25 ANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPVNGLPAGAETTSDIPISMDNLLSEALDLTRDQVE 100 (442)
T ss_pred HHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998876654321 11135777765 3 4676652 222222 223333445566677
Q ss_pred HHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 72 ELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 72 ~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
++++++ +++|||+| +++|+.+||+++|||+++|||++|++++ ++
T Consensus 101 ~~L~~~-------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~ 144 (442)
T PLN02208 101 AAVRAL-------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HT 144 (442)
T ss_pred HHHhhC-------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HH
Confidence 766543 67999999 6899999999999999999999999876 44
No 22
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.27 E-value=3.6e-11 Score=89.36 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=69.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCccc-----ccHHHHHHHHHHHchHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDR-----SELGKLTESLMRVMPRKREELIK 75 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~ 75 (125)
|+.|.+||++|||++++.+.+.+... +++++.+|+..+..+.. .+.......+...+...+.++++
T Consensus 16 A~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (392)
T TIGR01426 16 VEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDVLPQLEE 86 (392)
T ss_pred HHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999998887666543 68888888644321000 12233333333333334444443
Q ss_pred HhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 76 DSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 76 ~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+.. .+|+|||+|.++.|+..+|+++|||++.+.+..
T Consensus 87 ~~~~----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 87 AYKG----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HhcC----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 3322 468999999999999999999999999987653
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.06 E-value=3.2e-10 Score=84.30 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=68.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-c-----------cccHHHHHHHHHHHchH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-D-----------RSELGKLTESLMRVMPR 68 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~-----------~~~~~~~~~~~~~~~~~ 68 (125)
|+.|.+||++|||++++.....+.. .+++|+.+++..+... . ..........+.+....
T Consensus 21 a~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (401)
T cd03784 21 AWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLGALRLLRREAEA 91 (401)
T ss_pred HHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHH
Confidence 4678899999999999865544332 3688888875432110 0 00111122222233344
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHH
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
.++++++.+.. .+++|||+|.++.|+..+|+++|||.+.+++++..
T Consensus 92 ~~~~~~~~~~~----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~ 137 (401)
T cd03784 92 MLDDLVAAARD----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDT 137 (401)
T ss_pred HHHHHHHHhcc----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCC
Confidence 44554444322 47999999999999999999999999999987643
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.59 E-value=3.3e-08 Score=75.49 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=74.3
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhcc----ccCCCceEEeecCCCCCCcccc--cHHHHHHHHHHHchHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKN----YVLDQIHLISIPDGLETWEDRS--ELGKLTESLMRVMPRKREELI 74 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~----~~~~~i~~~~lp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 74 (125)
|++|+.+|+.||++++..+....... .... ......++...+++++.+.... +...........+...+++.+
T Consensus 26 a~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (496)
T KOG1192|consen 26 AKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLDISESLLELNKTCEDLLRDPL 104 (496)
T ss_pred HHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 57899999999999998876554321 1000 0001223333333444331111 111222333344555566655
Q ss_pred HHhhhcCCCCCeeEEEecCCcccHHHHHHHhC-CceEEEcchhHHHHHhhh
Q 039753 75 KDSNARETHENITYVIADGNVEQGIKVAEKLN-IQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 75 ~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lg-IP~~~f~t~~a~~~~~~~ 124 (125)
..+....+ ..++|+|+|.|+.|...+|.+.+ |+...|++.++...++.+
T Consensus 105 ~~~~~~~~-~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~ 154 (496)
T KOG1192|consen 105 EKLLLLKS-EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGL 154 (496)
T ss_pred HHHHHhhc-CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCC
Confidence 44432221 34999999999999999998886 999999999999887754
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=98.01 E-value=5.9e-06 Score=52.79 Aligned_cols=108 Identities=18% Similarity=0.065 Sum_probs=59.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHH------HHHchHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESL------MRVMPRKREELI 74 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 74 (125)
|+.|.+||++|++.+.+...+.+.+ .+++|+.++.+. ...........+... .......+++..
T Consensus 19 a~~L~~rGh~V~~~~~~~~~~~v~~---------~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (139)
T PF03033_consen 19 ARALRRRGHEVRLATPPDFRERVEA---------AGLEFVPIPGDS-RLPRSLEPLANLRRLARLIRGLEEAMRILARFR 88 (139)
T ss_dssp HHHHHHTT-EEEEEETGGGHHHHHH---------TT-EEEESSSCG-GGGHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCeEEEeecccceecccc---------cCceEEEecCCc-CcCcccchhhhhhhHHHHhhhhhHHHHHhhccC
Confidence 4678899999999998877766633 279999987541 000000011111111 111111222211
Q ss_pred HHhh-hcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHH
Q 039753 75 KDSN-ARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 75 ~~l~-~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
.... .-++....+.++.+........+|+++|||.+.....+-.
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 89 PDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred cchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1111 1111134668889998899999999999999988766543
No 26
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.42 E-value=0.0012 Score=47.56 Aligned_cols=44 Identities=14% Similarity=-0.059 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhH
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a 117 (125)
.++++++.+.. .+|++||+|. -+++...|+..|||++...-...
T Consensus 82 ~~~~~~~~l~~----~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~ 125 (318)
T PF13528_consen 82 RIRREIRWLRE----FRPDLVISDF-YPLAALAARRAGIPVIVISNQYW 125 (318)
T ss_pred HHHHHHHHHHh----cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHH
Confidence 34444444433 4799999995 45577899999999987765543
No 27
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.66 E-value=0.013 Score=42.68 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=25.2
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
.+|++||+| +-..+..+|+.+|||.+...-
T Consensus 92 ~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 92 YNPDLIISD-FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred cCCCEEEEC-CchHHHHHHHhcCCCEEEEec
Confidence 468999999 667788899999999996543
No 28
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.27 E-value=0.02 Score=44.60 Aligned_cols=33 Identities=0% Similarity=0.080 Sum_probs=27.8
Q ss_pred CCeeEEEecCCcccHHHHHHHh-CCceEEEcchh
Q 039753 84 ENITYVIADGNVEQGIKVAEKL-NIQSAAFWPAA 116 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~l-gIP~~~f~t~~ 116 (125)
.+.|.+|+|.+.....-+|+.+ |+|.+...+.+
T Consensus 135 ~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 135 NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred CceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 4799999999888888899999 99987766643
No 29
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.18 E-value=0.0055 Score=47.13 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=21.6
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
+.+.+|+|.|.+++..+|+.+|||.+.+.+
T Consensus 119 ~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 119 KFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred ccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 467788888777777788888888776544
No 30
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.19 E-value=1.7 Score=31.51 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=48.0
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCC-CCCCcccccHHHHHHHHHHHchHHHHHHHHHhhh
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDG-LETWEDRSELGKLTESLMRVMPRKREELIKDSNA 79 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 79 (125)
++.|..+|++|++++....... ... ...++++..+|.. .+...........+. +.. ....+..++++
T Consensus 20 a~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~~--- 87 (350)
T cd03785 20 AEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVGGLRRKGSLKKLKAPFK-LLK-GVLQARKILKK--- 87 (350)
T ss_pred HHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEecCcCCCChHHHHHHHHH-HHH-HHHHHHHHHHh---
Confidence 3567778999999976542211 110 1125777777632 211100011111111 111 11123333333
Q ss_pred cCCCCCeeEEEecCC-cc-cHHHHHHHhCCceEEE
Q 039753 80 RETHENITYVIADGN-VE-QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 80 ~~~~~~~~~iI~D~~-~~-w~~~vA~~lgIP~~~f 112 (125)
.+|++|++..- .. ++.-.|+..|+|.+..
T Consensus 88 ----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 88 ----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred ----cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 36899998752 23 4566788889998764
No 31
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=91.77 E-value=0.66 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=27.6
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
..+.++|+|---..+.+-|++.|||.++|-.
T Consensus 28 a~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 28 AEIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred cEEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 4689999999888999999999999988754
No 32
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=91.03 E-value=0.31 Score=37.00 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=26.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD 44 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 44 (125)
||.|..+|+.|+|.+++...+.+.+. ++.|..++.
T Consensus 22 ~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~ 56 (406)
T COG1819 22 GKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPI 56 (406)
T ss_pred HHHHHhcCCeEEEEeCHHHHHHHHHh---------Ccceeeccc
Confidence 35678899999999999887776554 466766653
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=89.80 E-value=4.1 Score=29.48 Aligned_cols=94 Identities=18% Similarity=0.101 Sum_probs=45.8
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHH--HchHHHHHHHHHhhh
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMR--VMPRKREELIKDSNA 79 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~ 79 (125)
+.|..+|+.|++++.+.... ... ....+++++.++-.-... ......+..... .....+.+++++
T Consensus 22 ~~L~~~g~eV~vv~~~~~~~---~~~----~~~~g~~~~~i~~~~~~~---~~~~~~l~~~~~~~~~~~~l~~~i~~--- 88 (348)
T TIGR01133 22 EELIKRGVEVLWLGTKRGLE---KRL----VPKAGIEFYFIPVGGLRR---KGSFRLIKTPLKLLKAVFQARRILKK--- 88 (348)
T ss_pred HHHHhCCCEEEEEeCCCcch---hcc----cccCCCceEEEeccCcCC---CChHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 56777899999997533211 010 011357777776321111 111111111110 011123333332
Q ss_pred cCCCCCeeEEEecCCc-c-cHHHHHHHhCCceEEE
Q 039753 80 RETHENITYVIADGNV-E-QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 80 ~~~~~~~~~iI~D~~~-~-w~~~vA~~lgIP~~~f 112 (125)
.+|++|++..-. . ++.-.++..|+|.+.+
T Consensus 89 ----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 89 ----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred ----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 368999987533 2 3444677789998753
No 34
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=88.91 E-value=6.4 Score=29.31 Aligned_cols=98 Identities=6% Similarity=0.051 Sum_probs=51.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCccc-ccHHHHHHHHHHHchHHHHHHHHHhhh
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDR-SELGKLTESLMRVMPRKREELIKDSNA 79 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~ 79 (125)
|+.|+.+|+.|++++...... . . .+++.+.++.+-...... .....+..... .... +.+.+..+..
T Consensus 17 a~~L~~~G~~v~~~~~~~~~~----~------~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 83 (396)
T cd03818 17 APALAAQGHEVVFLTEPNAAP----P------P-GGVRVVRYRPPRGPTSGTHPYLREFEEAVL-RGQA-VARALLALRA 83 (396)
T ss_pred HHHHHHCCCEEEEEecCCCCC----C------C-CCeeEEEecCCCCCCCCCCccchhHHHHHH-HHHH-HHHHHHHHHh
Confidence 456788999999998654321 0 0 147777776432111111 11112222221 1122 2233333322
Q ss_pred cCCCCCeeEEEecCCcccHHHHHHHh-CCceEEEc
Q 039753 80 RETHENITYVIADGNVEQGIKVAEKL-NIQSAAFW 113 (125)
Q Consensus 80 ~~~~~~~~~iI~D~~~~w~~~vA~~l-gIP~~~f~ 113 (125)
++ -+|+.|++-...+++.-+.+.+ ++|.+.++
T Consensus 84 ~~--~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 84 KG--FRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred cC--CCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 22 4689999887777777777775 48887754
No 35
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=87.88 E-value=3.1 Score=30.37 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=19.6
Q ss_pred CeeEEEecCC-cc-cHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGN-VE-QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~-~~-w~~~vA~~lgIP~~~f 112 (125)
++++|++... .. ++..+++++|+|.+..
T Consensus 101 ~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 101 RPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred CccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 6788877643 23 4667788999997653
No 36
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=87.73 E-value=0.96 Score=32.81 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcc-----cHHHHHHHhCCceEEEcch
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVE-----QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~-----w~~~vA~~lgIP~~~f~t~ 115 (125)
.++++++++++.++. .++-+||-|+|.. -..+.|.+-|||+|+.--.
T Consensus 132 ~p~IKE~vR~~I~~A--~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQA--QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCCHHHHHHHHHHHh--cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 346777777765443 5899999999874 3677888999999987543
No 37
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=87.73 E-value=3.9 Score=33.95 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=52.9
Q ss_pred ccccCCC----EEEEEeCccchHHHh---hhhhhccccCCCceEEeecCCCCCCc------ccccHHHHHHHHHHHchHH
Q 039753 3 WLVKHGF----TITLSNTEYNHRQVM---NILEEKNYVLDQIHLISIPDGLETWE------DRSELGKLTESLMRVMPRK 69 (125)
Q Consensus 3 ~L~~~G~----~VT~v~t~~~~~~~~---~~~~~~~~~~~~i~~~~lp~~~~~~~------~~~~~~~~~~~~~~~~~~~ 69 (125)
+|+.+|+ +|+++|-......-. +.... ....++++++.+|.+-+... ...++..++..+.+.+
T Consensus 299 ~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~-~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~--- 374 (784)
T TIGR02470 299 RIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK-VYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDA--- 374 (784)
T ss_pred HHHhcCCCccceEEEEecCCCCcccccccccccc-ccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHH---
Confidence 5778999 777887543211100 00000 01235788888886532221 1233444444443221
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc-c-HHHHHHHhCCc-eEEEc
Q 039753 70 REELIKDSNARETHENITYVIADGNVE-Q-GIKVAEKLNIQ-SAAFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~-w-~~~vA~~lgIP-~~~f~ 113 (125)
.+.+..+. + .+|+.|++-...+ + +..+|+++||| +..+.
T Consensus 375 ~~~~~~~~---~--~~pDlIHahy~d~glva~lla~~lgVP~v~t~H 416 (784)
T TIGR02470 375 EKEILAEL---Q--GKPDLIIGNYSDGNLVASLLARKLGVTQCTIAH 416 (784)
T ss_pred HHHHHHhc---C--CCCCEEEECCCchHHHHHHHHHhcCCCEEEECC
Confidence 12222121 1 4689999877654 5 67799999999 44444
No 38
>PLN00142 sucrose synthase
Probab=86.85 E-value=3.2 Score=34.56 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCceEEeecCCCCCCc-----ccccHHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCcc-c-HHHHHHHhCC
Q 039753 35 DQIHLISIPDGLETWE-----DRSELGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNVE-Q-GIKVAEKLNI 107 (125)
Q Consensus 35 ~~i~~~~lp~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~-w-~~~vA~~lgI 107 (125)
++.+++-+|.|-..+. ...++..++..+.+.+ .+.+.++. + .+|+.|++-...+ | +..+|+++||
T Consensus 361 ~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~---~~~~~~~~---~--~~PDlIHaHYwdsg~vA~~La~~lgV 432 (815)
T PLN00142 361 EHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDA---ASEILAEL---Q--GKPDLIIGNYSDGNLVASLLAHKLGV 432 (815)
T ss_pred CceEEEecCCCCCccccccccCHHHHHHHHHHHHHHH---HHHHHHhc---C--CCCCEEEECCccHHHHHHHHHHHhCC
Confidence 4678888886532221 1233444444443221 22222222 1 3689999987765 5 7789999999
Q ss_pred ceEE
Q 039753 108 QSAA 111 (125)
Q Consensus 108 P~~~ 111 (125)
|-+.
T Consensus 433 P~v~ 436 (815)
T PLN00142 433 TQCT 436 (815)
T ss_pred CEEE
Confidence 9774
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=86.33 E-value=6.8 Score=29.61 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=22.2
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeec
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIP 43 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp 43 (125)
|+.|+++|+.||+++....-.. ... ....+++++.++
T Consensus 24 a~~L~~~G~~V~ii~~~~~~~~-~~~-----~~~~~v~~~~~~ 60 (415)
T cd03816 24 ALSLAKHGWKVDLVGYLETPPH-DEI-----LSNPNITIHPLP 60 (415)
T ss_pred HHHHHhcCceEEEEEecCCCCC-HHH-----hcCCCEEEEECC
Confidence 4678899999999975432111 000 012468887775
No 40
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=84.23 E-value=13 Score=27.08 Aligned_cols=95 Identities=18% Similarity=0.066 Sum_probs=46.5
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC-CCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhc
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD-GLETWEDRSELGKLTESLMRVMPRKREELIKDSNAR 80 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (125)
+.|..+|+.|++++.+..... .. ....+++++.++. +.... .....+....+ ....+..+.+-+..
T Consensus 23 ~~L~~~g~ev~vv~~~~~~~~---~~----~~~~g~~~~~~~~~~~~~~----~~~~~l~~~~~-~~~~~~~~~~~ik~- 89 (357)
T PRK00726 23 EELKKRGWEVLYLGTARGMEA---RL----VPKAGIEFHFIPSGGLRRK----GSLANLKAPFK-LLKGVLQARKILKR- 89 (357)
T ss_pred HHHHhCCCEEEEEECCCchhh---hc----cccCCCcEEEEeccCcCCC----ChHHHHHHHHH-HHHHHHHHHHHHHh-
Confidence 567778999999987542211 10 0012677777763 22111 11111111110 11122222222222
Q ss_pred CCCCCeeEEEecCC-cccH-HHHHHHhCCceEEE
Q 039753 81 ETHENITYVIADGN-VEQG-IKVAEKLNIQSAAF 112 (125)
Q Consensus 81 ~~~~~~~~iI~D~~-~~w~-~~vA~~lgIP~~~f 112 (125)
.+|++|++... ..|. .-+++..|+|.+..
T Consensus 90 ---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 90 ---FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred ---cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 36899999973 3443 44566678988754
No 41
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=83.97 E-value=4.4 Score=28.83 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcchhHHHHHh
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPAAAAVLAL 122 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~~a~~~~~ 122 (125)
.+.++.+.+.+ ..+.||+++...+ .+..+|++.|+|.+.+-+.+-..+.+
T Consensus 205 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~ 256 (266)
T cd01018 205 DLKRLIDLAKE----KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEEN 256 (266)
T ss_pred HHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHH
Confidence 45555555554 4688999998764 57889999999998887765444443
No 42
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=83.92 E-value=10 Score=32.59 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=57.2
Q ss_pred CcccccCC--CEEEEEeCccchHHH-----hhh--hhh--------ccccCCCceEEeecCCCCCCc-ccccHHHHHHHH
Q 039753 1 SQWLVKHG--FTITLSNTEYNHRQV-----MNI--LEE--------KNYVLDQIHLISIPDGLETWE-DRSELGKLTESL 62 (125)
Q Consensus 1 a~~L~~~G--~~VT~v~t~~~~~~~-----~~~--~~~--------~~~~~~~i~~~~lp~~~~~~~-~~~~~~~~~~~~ 62 (125)
|+.|+++| ++|+++|-....... ... ..+ .....++++++-+|.|..... ....+..++..+
T Consensus 205 AraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef 284 (1050)
T TIGR02468 205 ARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEF 284 (1050)
T ss_pred HHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHH
Confidence 57889987 799999864332111 000 000 001235889999987633221 223445555555
Q ss_pred HHHchHHHHHH----HHHhhhcCCCCCeeEEEecCCc-cc-HHHHHHHhCCceEE
Q 039753 63 MRVMPRKREEL----IKDSNARETHENITYVIADGNV-EQ-GIKVAEKLNIQSAA 111 (125)
Q Consensus 63 ~~~~~~~~~~~----l~~l~~~~~~~~~~~iI~D~~~-~w-~~~vA~~lgIP~~~ 111 (125)
.+.+...+.++ .+++....+ ..|++|-+-... ++ +..+++.+|||.+.
T Consensus 285 ~d~~l~~~~~~~~~~~~~~~~~~~-~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~ 338 (1050)
T TIGR02468 285 VDGALSHIVNMSKVLGEQIGSGHP-VWPYVIHGHYADAGDSAALLSGALNVPMVL 338 (1050)
T ss_pred HHHHHHHHHhhhhhhhhhhccccC-CCCCEEEECcchHHHHHHHHHHhhCCCEEE
Confidence 44443333322 222211111 247777776544 34 66788899999543
No 43
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=83.10 E-value=4.4 Score=28.03 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
++.+++.+.+..-...+.+||+|-=---+.+.|++.|||.+.+-.
T Consensus 13 ~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 13 FRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred HHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 445555544321113688999996555578999999999987643
No 44
>PRK10307 putative glycosyl transferase; Provisional
Probab=83.08 E-value=5.1 Score=29.93 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=14.7
Q ss_pred CcccccCCCEEEEEeCcc
Q 039753 1 SQWLVKHGFTITLSNTEY 18 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~ 18 (125)
++.|.++|+.||+++++.
T Consensus 25 ~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 25 AEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHCCCeEEEEecCC
Confidence 367888999999999763
No 45
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=82.99 E-value=4.2 Score=29.53 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
.++.+++......-...+.+||+|- +-+..+|+++|||.+.+
T Consensus 102 nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~ 143 (286)
T PRK13011 102 CLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHF 143 (286)
T ss_pred cHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEe
Confidence 4777777665432114688999973 34777899999999986
No 46
>COG3150 Predicted esterase [General function prediction only]
Probab=81.93 E-value=2.3 Score=28.70 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
..++.++.+..+ +.|-.+=+-.-..|+..++..+||+.++|.+.
T Consensus 47 ~ele~~i~~~~~----~~p~ivGssLGGY~At~l~~~~Girav~~NPa 90 (191)
T COG3150 47 KELEKAVQELGD----ESPLIVGSSLGGYYATWLGFLCGIRAVVFNPA 90 (191)
T ss_pred HHHHHHHHHcCC----CCceEEeecchHHHHHHHHHHhCChhhhcCCC
Confidence 345566655532 23433333334469999999999999999875
No 47
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=81.74 E-value=17 Score=27.02 Aligned_cols=98 Identities=9% Similarity=0.049 Sum_probs=49.7
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC-CCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhc
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD-GLETWEDRSELGKLTESLMRVMPRKREELIKDSNAR 80 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (125)
+.|-.+|++|+|+.++.-... ... ...++.+..++. ++... ... ..+..... +...+.+.++-+..
T Consensus 23 ~~l~~~g~~v~~vg~~~~~e~---~l~----~~~g~~~~~~~~~~l~~~---~~~-~~~~~~~~-~~~~~~~~~~i~~~- 89 (352)
T PRK12446 23 PYLKEDNWDISYIGSHQGIEK---TII----EKENIPYYSISSGKLRRY---FDL-KNIKDPFL-VMKGVMDAYVRIRK- 89 (352)
T ss_pred HHHHhCCCEEEEEECCCcccc---ccC----cccCCcEEEEeccCcCCC---chH-HHHHHHHH-HHHHHHHHHHHHHh-
Confidence 455568999999987653321 110 012577777763 23211 111 11111111 11112222222221
Q ss_pred CCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcch
Q 039753 81 ETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 81 ~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~ 115 (125)
.+|++||...... .+.-.|+-+|+|.+..-..
T Consensus 90 ---~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n 123 (352)
T PRK12446 90 ---LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD 123 (352)
T ss_pred ---cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC
Confidence 4789999965322 2477888889999876543
No 48
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=80.50 E-value=13 Score=27.54 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=14.9
Q ss_pred CcccccCCCEEEEEeCcc
Q 039753 1 SQWLVKHGFTITLSNTEY 18 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~ 18 (125)
|+.|+++|++||++++..
T Consensus 30 a~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 30 ATELARRGIEVDIFTRAT 47 (405)
T ss_pred HHHHhhCCCEEEEEeccc
Confidence 467888999999998754
No 49
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=79.88 E-value=20 Score=25.73 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=22.1
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD 44 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 44 (125)
|+.|..+|+.|+|++......... ... ..+..+..+|+
T Consensus 24 A~~l~~~g~~v~f~~~~~~~~~~~-~i~-----~~g~~v~~~~~ 61 (279)
T TIGR03590 24 ARALHAQGAEVAFACKPLPGDLID-LLL-----SAGFPVYELPD 61 (279)
T ss_pred HHHHHHCCCEEEEEeCCCCHHHHH-HHH-----HcCCeEEEecC
Confidence 345656899999998765432211 111 12567777764
No 50
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=79.64 E-value=3.1 Score=27.77 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
...++..+.++..+ ..++||.+.. +.+.|+++|+|.+.+.++-
T Consensus 111 ~~e~~~~i~~~~~~----G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 111 EEEIEAAIKQAKAE----GVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHHHHHHHHHHT----T--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHHHHHHHHHHHc----CCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 45677777777653 5899999974 6899999999998877743
No 51
>PLN02828 formyltetrahydrofolate deformylase
Probab=78.63 E-value=8.1 Score=27.89 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecC---CcccHHHHHHHhCCceEEEcc
Q 039753 68 RKREELIKDSNARETHENITYVIADG---NVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~---~~~w~~~vA~~lgIP~~~f~t 114 (125)
..+.+++.+.....-...+.+||++- -..-....|+++|||.+.+-.
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 35667777665432114688999986 233678899999999986543
No 52
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=78.59 E-value=3.1 Score=28.81 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~ 109 (125)
+.+.+++++..|.+.+ .=-++|+-.|-..+..||.+||||.
T Consensus 89 lT~Gi~eLv~~L~~~~---~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARG---TQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred cCCCHHHHHHHHHHcC---CeEEEEcCChHHHHHHHHHHhCCcH
Confidence 4456778888887654 2348999999999999999999997
No 53
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=76.71 E-value=6.7 Score=26.63 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc-cHHHHHHHhCCceEEEcchhH
Q 039753 70 REELIKDSNARETHENITYVIADGNVE-QGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~-w~~~vA~~lgIP~~~f~t~~a 117 (125)
+++++++... +..+||--.+.+ |+.-+|+++|+|.+.+.|+--
T Consensus 49 l~~~i~~~~~-----~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 49 LEQLIEELKP-----ENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHhCCC-----CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 4555555432 225777777775 799999999999999987643
No 54
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=75.82 E-value=4.7 Score=30.43 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=22.0
Q ss_pred cccccC--CCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC
Q 039753 2 QWLVKH--GFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD 44 (125)
Q Consensus 2 ~~L~~~--G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 44 (125)
+.|+.. |+.|++++-.....-+ ....+++++.+|.
T Consensus 33 ~aLv~d~~~~~Il~IsG~~~~~~F--------~~~~gVd~V~LPs 69 (400)
T COG4671 33 HALVEDYLGFDILIISGGPPAGGF--------PGPAGVDFVKLPS 69 (400)
T ss_pred HHHhhcccCceEEEEeCCCccCCC--------CCcccCceEecCc
Confidence 445554 8999999754333211 1124799999995
No 55
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=75.68 E-value=4.3 Score=25.70 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=26.8
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCc--ccHHHHHHHhCCceEEEcch
Q 039753 70 REELIKDSNARETHENITYVIADGNV--EQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~--~w~~~vA~~lgIP~~~f~t~ 115 (125)
-++.++++... .+|..||++-+. .|..++|++.|+|...---.
T Consensus 70 r~~~l~~l~~~---~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 70 RKERLEKLFSY---NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp HCCHHHHHCTT---T-S-EEEETTT---HHHHHHHHHCT--EEEESS-
T ss_pred HHHHHHHHhCC---CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCc
Confidence 34455555443 578899999977 48999999999998765443
No 56
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=75.64 E-value=28 Score=25.53 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=14.3
Q ss_pred CcccccCCCEEEEEeCc
Q 039753 1 SQWLVKHGFTITLSNTE 17 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~ 17 (125)
|+.|+++|++||++++.
T Consensus 23 a~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 23 ALALQSRGHEVTIYTSH 39 (392)
T ss_pred HHHHHhCCCeEEEEcCC
Confidence 46788899999999864
No 57
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=74.33 E-value=16 Score=29.63 Aligned_cols=47 Identities=19% Similarity=-0.023 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEe-cC--CcccHHHHHHHhCC--ceEEEcchh
Q 039753 66 MPRKREELIKDSNARETHENITYVIA-DG--NVEQGIKVAEKLNI--QSAAFWPAA 116 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~-D~--~~~w~~~vA~~lgI--P~~~f~t~~ 116 (125)
....++++.+.+.+ .+|+|+|. |. |.-....-+++.|+ |.+.|.+-.
T Consensus 295 l~~~~~~l~~~i~~----~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq 346 (608)
T PRK01021 295 LWYRYRKLYKTILK----TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS 346 (608)
T ss_pred HHHHHHHHHHHHHh----cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 34455566666554 36776554 87 55567778888996 877665433
No 58
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=74.04 E-value=17 Score=25.70 Aligned_cols=29 Identities=14% Similarity=-0.005 Sum_probs=19.9
Q ss_pred CeeEEEecCCcccH---HHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVEQG---IKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w~---~~vA~~lgIP~~~f~ 113 (125)
+++.|++.....+. ...+++.|+|.+...
T Consensus 96 ~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 96 RPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred CCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 57788777655443 345788899987754
No 59
>PRK04940 hypothetical protein; Provisional
Probab=72.44 E-value=13 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=24.8
Q ss_pred eeEEEecCCc-ccHHHHHHHhCCceEEEcchh
Q 039753 86 ITYVIADGNV-EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 86 ~~~iI~D~~~-~w~~~vA~~lgIP~~~f~t~~ 116 (125)
+.+||--.+. .|+.-+|.++|+|.|...|.-
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 3566666665 499999999999999998764
No 60
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=71.74 E-value=16 Score=24.79 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
++.+++.+.++.-.-.+.+||+|---.-+.+.|++.|||.+.+.
T Consensus 14 ~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 14 LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLS 57 (190)
T ss_pred HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEEC
Confidence 44555555432200257788899644456789999999988754
No 61
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=71.43 E-value=9.3 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.013 Sum_probs=20.5
Q ss_pred CeeEEEecCCccc--HHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~lgIP~~~f~t 114 (125)
++.-+|.|.|++- +..+|.++|-..+.+=.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~ 221 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEI 221 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEES
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeC
Confidence 4567999999964 77899999988776643
No 62
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=71.28 E-value=13 Score=27.09 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
.++.++.......-.-.+.+||+|-- -+.+.|+++|||.+.+-
T Consensus 106 nl~al~~~~~~~~l~~~i~~visn~~--~~~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 106 CLNDLLYRWRMGELDMDIVGIISNHP--DLQPLAVQHDIPFHHLP 148 (289)
T ss_pred cHHHHHHHHHCCCCCcEEEEEEECCh--hHHHHHHHcCCCEEEeC
Confidence 46777777654321136789999863 34699999999999865
No 63
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=71.05 E-value=35 Score=25.65 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=48.0
Q ss_pred cccccCCC-EEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcc-cccHHHHHHHHHHHchHHHHHHHHHhhh
Q 039753 2 QWLVKHGF-TITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWED-RSELGKLTESLMRVMPRKREELIKDSNA 79 (125)
Q Consensus 2 ~~L~~~G~-~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 79 (125)
+.|..+|. .|.++-|......... ...++.++.|+.+-..... .......+... ......+.+|++.
T Consensus 22 ~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~il~~~-- 90 (357)
T COG0707 22 EELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSGGLRRKGSLKLLKAPFKLL--KGVLQARKILKKL-- 90 (357)
T ss_pred HHHHhhCccEEEEecccccceeeec-------cccCceEEEEecccccccCcHHHHHHHHHHH--HHHHHHHHHHHHc--
Confidence 45677888 4555544433322111 1136888888753222211 11111111111 1112334555553
Q ss_pred cCCCCCeeEEEecCCc--ccHHHHHHHhCCceEEE
Q 039753 80 RETHENITYVIADGNV--EQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 80 ~~~~~~~~~iI~D~~~--~w~~~vA~~lgIP~~~f 112 (125)
+|++||.=... .-..-.|..+|||.+.=
T Consensus 91 -----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih 120 (357)
T COG0707 91 -----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIH 120 (357)
T ss_pred -----CCCEEEecCCccccHHHHHHHhCCCCEEEE
Confidence 68899985433 35666788889998864
No 64
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=70.74 E-value=26 Score=23.26 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=32.6
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
..+...++++.+.+++ ...+||+...-.+...+++++|+..+
T Consensus 88 ~~~~~~~~l~~l~~~g---~~v~ivS~s~~~~v~~~~~~lg~~~~ 129 (202)
T TIGR01490 88 LYPEARDLIRWHKAEG---HTIVLVSASLTILVKPLARILGIDNA 129 (202)
T ss_pred ccHHHHHHHHHHHHCC---CEEEEEeCCcHHHHHHHHHHcCCcce
Confidence 4556777777776543 45689999998999999999999864
No 65
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=70.70 E-value=9.9 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=22.1
Q ss_pred CeeEEEecCCccc-------HHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQ-------GIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w-------~~~vA~~lgIP~~~f 112 (125)
+.+||..|=...| ..+||+++|||.+++
T Consensus 82 ~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 82 PVDCVLIDEAQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred CcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 4789999975443 567899999999875
No 66
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=70.36 E-value=13 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
..+++++.......-.-.+.+||+|-- -+...|+++|||.+.+-.
T Consensus 96 ~nl~~l~~~~~~g~l~~~i~~visn~~--~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 96 HCLGDLLWRWYSGELDAEIALVISNHE--DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHHHHHhCCCEEEcCC
Confidence 356777776654221136889999963 345579999999988764
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=70.32 E-value=15 Score=26.64 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
.++.+++......-...+.+||+|-- -+..+|++.|||.+.+-
T Consensus 102 nl~al~~~~~~~~~~~~i~~visn~~--~~~~lA~~~gIp~~~~~ 144 (286)
T PRK06027 102 CLGDLLWRWRSGELPVEIAAVISNHD--DLRSLVERFGIPFHHVP 144 (286)
T ss_pred CHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHHHHHhCCCEEEec
Confidence 45666665543210146889999863 46667999999998864
No 68
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=69.65 E-value=36 Score=25.13 Aligned_cols=47 Identities=6% Similarity=0.062 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcchhHH
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
.-++.++++... .+|..||++-+.. +..++|++.+||.+...-.+..
T Consensus 70 ~~~~~~~~~~~~---~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 70 EQKQIIHNLLTL---NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHHHHHHHHhCC---CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 445556665543 4788889987663 7999999999998876655533
No 69
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=68.86 E-value=9.4 Score=21.95 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=21.3
Q ss_pred CeeEEEecCCc--ccHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNV--EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~--~w~~~vA~~lgIP~~~f~ 113 (125)
.+..||.+--. +-+.-+|+++|||.++=.
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 56777777644 568889999999998744
No 70
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=68.85 E-value=20 Score=24.53 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
++.+++.+.++.-...+.++|+|-=..-+.+.|++.|||.+.+-.
T Consensus 15 ~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 15 LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECc
Confidence 444555544321002467778886334478999999999887543
No 71
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=68.42 E-value=33 Score=23.05 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHh-hhcCCCCCeeEEEecCCccc---HHHHHHHh
Q 039753 35 DQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDS-NARETHENITYVIADGNVEQ---GIKVAEKL 105 (125)
Q Consensus 35 ~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~iI~D~~~~w---~~~vA~~l 105 (125)
|.|-+.++.||=..+ ..+-++.....+...+.++|++- ...+| .++.|||+|...+- +...|+||
T Consensus 4 pkIGIrp~iDGR~~g-----VresLe~~tm~ma~~~a~ll~~~l~~~~G-~~Ve~Viad~~Iggv~eAa~~ae~f 72 (171)
T PF07881_consen 4 PKIGIRPTIDGRRGG-----VRESLEEQTMNMAKAVAELLEENLRYPDG-SPVECVIADTTIGGVAEAAACAEKF 72 (171)
T ss_dssp -EEEEEEB----TTT-----HHHHHHHHHHHHHHHHHHHHHHH-B-TTS--B--EEE-SS-B-SHHHHHHHHHHH
T ss_pred CeEEEEEeecCCchh-----HHHHHHHHHHHHHHHHHHHHHHhcccCCC-CeeEEEECCCcccCHHHHHHHHHHH
Confidence 345556555543221 33333333334555666666553 22222 68999999997753 55567777
No 72
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=67.74 E-value=34 Score=22.95 Aligned_cols=93 Identities=5% Similarity=0.004 Sum_probs=53.0
Q ss_pred CCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhcCCCCCe
Q 039753 7 HGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDSNARETHENI 86 (125)
Q Consensus 7 ~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 86 (125)
+|++|++++...+... .++++.+.+...-...........-++..... ...+.+.+.+|.+++ -.|
T Consensus 2 ~gh~v~fl~~~~~~~~-----------~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~r-g~av~~a~~~L~~~G--f~P 67 (171)
T PF12000_consen 2 RGHEVVFLTERKRPPI-----------PPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLR-GQAVARAARQLRAQG--FVP 67 (171)
T ss_pred CCCEEEEEecCCCCCC-----------CCCcEEEEeCCCCCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHcC--CCC
Confidence 6899999984432211 13788777753110111111111122222222 234555566676654 578
Q ss_pred eEEEecCCcccHHHHHHHh-CCceEEEc
Q 039753 87 TYVIADGNVEQGIKVAEKL-NIQSAAFW 113 (125)
Q Consensus 87 ~~iI~D~~~~w~~~vA~~l-gIP~~~f~ 113 (125)
+.||.-.-.+-+.-+-+-+ ++|.+.|+
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999988777777788888 78877764
No 73
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=65.81 E-value=33 Score=25.70 Aligned_cols=32 Identities=9% Similarity=-0.060 Sum_probs=21.9
Q ss_pred CeeE-EEecC--CcccHHHHHHHh--CCceEEEcchh
Q 039753 85 NITY-VIADG--NVEQGIKVAEKL--NIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~~-iI~D~--~~~w~~~vA~~l--gIP~~~f~t~~ 116 (125)
+|+| |..|. |.-+...-+++. |||.+.|.+-.
T Consensus 76 ~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pq 112 (347)
T PRK14089 76 QADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQ 112 (347)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 5666 45587 555667777888 79988776544
No 74
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=65.80 E-value=17 Score=24.89 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~ 109 (125)
..+...++++.+.+. . ..+||+..+-.++..+++++|+..
T Consensus 69 l~pga~ell~~lk~~---~-~~~IVS~~~~~~~~~il~~lgi~~ 108 (203)
T TIGR02137 69 PLEGAVEFVDWLRER---F-QVVILSDTFYEFSQPLMRQLGFPT 108 (203)
T ss_pred CCccHHHHHHHHHhC---C-eEEEEeCChHHHHHHHHHHcCCch
Confidence 556778888887653 2 578999999999999999999984
No 75
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=65.71 E-value=20 Score=25.64 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcch
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~ 115 (125)
.+.++++.+.+ ..+.||+++...+ .+..+|++.|++.+.+.+.
T Consensus 208 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 208 QLAELVEFVKK----SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 44555555544 3688999998775 5788999999999887653
No 76
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=64.36 E-value=48 Score=23.44 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.0
Q ss_pred cccccCCCEEEEEeCccc
Q 039753 2 QWLVKHGFTITLSNTEYN 19 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~ 19 (125)
+.|+++|+.|++++....
T Consensus 25 ~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 25 EELVKRGHEVTVITGSPN 42 (394)
T ss_pred HHHHhCCceEEEEecCCC
Confidence 567788999999986543
No 77
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=64.30 E-value=14 Score=25.92 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc--HHHHHHHhCCceEEEcch
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ--GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w--~~~vA~~lgIP~~~f~t~ 115 (125)
+.++.+.+.+ ..+.||+++...+- +..+|++.|+|.+.+.+.
T Consensus 188 l~~l~~~ik~----~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 188 LAELIKLIKE----NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHH----TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHhhh----cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 3444444443 46899999987754 688999999999887766
No 78
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=63.77 E-value=59 Score=24.27 Aligned_cols=30 Identities=23% Similarity=0.157 Sum_probs=22.6
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
+|+.+|+ ....-+..+|.-+|+|.+.|.=+
T Consensus 83 ~pDv~is-~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 83 KPDVAIS-FGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred CCCEEEe-cCcHHHHHHHHHhCCCeEEEecC
Confidence 6788885 23345777999999999999643
No 79
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=62.51 E-value=26 Score=25.49 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc-------HHHHHHHhCCceEEEcchhHHHHHhh
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ-------GIKVAEKLNIQSAAFWPAAAAVLALN 123 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w-------~~~vA~~lgIP~~~f~t~~a~~~~~~ 123 (125)
...++..+.. ..--++|+|.-++- ...-|.+.||+...+-..||...+++
T Consensus 67 ~~~li~~l~~----g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~ 123 (275)
T COG0313 67 LPKLIPLLKK----GKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALS 123 (275)
T ss_pred HHHHHHHHhc----CCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHH
Confidence 3444444443 24568999998764 34578899999999999999988875
No 80
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=61.65 E-value=18 Score=27.70 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=21.3
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
.+|+.+|.+. +...+|+++|||.+.+
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~ 394 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVI 394 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEE
Confidence 3688888886 6778899999998876
No 81
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=60.08 E-value=29 Score=25.41 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcch
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~ 115 (125)
..+.++++.+.. .++.||+++...+ .+..+|++.|++.+.+-+.
T Consensus 239 ~~l~~l~~~ik~----~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl 284 (311)
T PRK09545 239 QRLHEIRTQLVE----QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPL 284 (311)
T ss_pred HHHHHHHHHHHH----cCCCEEEecCCCChHHHHHHHHhcCCeEEEeccc
Confidence 345555555554 4789999999775 5788999999998776544
No 82
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=59.65 E-value=29 Score=27.29 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc----cHHHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE----QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~----w~~~vA~~lgIP~~~f~ 113 (125)
.+.++++.+.+ .++.||+++...+ .+..+|++.|+|.+.+.
T Consensus 408 ~L~~Li~~IK~----~~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l~ 452 (479)
T TIGR03772 408 DRRRLTRTIEN----LKVPAVFLEPNLAARSTTLNEIADELGVRVCAIY 452 (479)
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCCCchHHHHHHHHHcCCcEEeee
Confidence 35555555554 4789999999874 36899999999987664
No 83
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=58.47 E-value=5.9 Score=19.93 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=15.2
Q ss_pred CCeeEEEecCCcc-cHHHHHHHhCCceEEE
Q 039753 84 ENITYVIADGNVE-QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~-w~~~vA~~lgIP~~~f 112 (125)
.|.+|.+.|--.. -.+++|.++||...-|
T Consensus 12 H~~dC~~C~~~G~CeLQ~~~~~~gv~~~~f 41 (41)
T PF10588_consen 12 HPLDCPTCDKNGNCELQDLAYEYGVDEQRF 41 (41)
T ss_dssp ----TTT-TTGGG-HHHHHHHHH-S-----
T ss_pred CCCcCcCCCCCCCCHHHHHHHHhCCCcCCC
Confidence 4778999997665 4899999999976443
No 84
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=58.39 E-value=5.1 Score=24.91 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=38.8
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhc
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDSNAR 80 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (125)
++.|+++|++||+++........ . ....++++..+|-. ............ ..+.+++.. . +
T Consensus 11 ~~~L~~~G~~V~v~~~~~~~~~~--~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~l~~-~-~ 71 (160)
T PF13579_consen 11 ARALAARGHEVTVVTPQPDPEDD--E-----EEEDGVRVHRLPLP--RRPWPLRLLRFL--------RRLRRLLAA-R-R 71 (160)
T ss_dssp HHHHHHTT-EEEEEEE---GGG---S-----EEETTEEEEEE--S---SSSGGGHCCHH--------HHHHHHCHH-C-T
T ss_pred HHHHHHCCCEEEEEecCCCCccc--c-----cccCCceEEeccCC--ccchhhhhHHHH--------HHHHHHHhh-h-c
Confidence 35688899999999854433211 0 01136788777632 110100011111 123333311 1 1
Q ss_pred CCCCCeeEEEecCCc-ccHHHHHH-HhCCceEEEc
Q 039753 81 ETHENITYVIADGNV-EQGIKVAE-KLNIQSAAFW 113 (125)
Q Consensus 81 ~~~~~~~~iI~D~~~-~w~~~vA~-~lgIP~~~f~ 113 (125)
.+++.|.+-... .+...+|+ +.|+|.+.-.
T Consensus 72 ---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 72 ---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp ------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred ---cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 467776655543 35556666 8899987644
No 85
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=56.31 E-value=38 Score=22.78 Aligned_cols=17 Identities=41% Similarity=0.376 Sum_probs=14.1
Q ss_pred HHHHHHHhCCceEEEcc
Q 039753 98 GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t 114 (125)
..++|+++|||.+.-.-
T Consensus 55 l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 55 AVKIAKKANIPVAATGG 71 (171)
T ss_pred HHHHHHHHCCCEEEccc
Confidence 78899999999886543
No 86
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=55.94 E-value=82 Score=24.85 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc-----ccHHHHHHHhCCceEEEc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV-----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~-----~w~~~vA~~lgIP~~~f~ 113 (125)
...++.+..+...-.++..++.+...+ .+++.|+...-. .|.+-.|+-+|+|..+.-
T Consensus 407 ~~~~~RAvlEgia~~~~~~l~~l~~~g--~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~ 468 (536)
T TIGR01234 407 APLLYRALIEATAFGTRMIMETFTDSG--VPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVA 468 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEeCCccccCHHHHHHHHHhhCCeeEecc
Confidence 344555555555556666676665433 456777777655 699999999999997655
No 87
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=53.97 E-value=46 Score=23.60 Aligned_cols=41 Identities=7% Similarity=0.094 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCccc--HH---HHHHHhCCceEEE
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQ--GI---KVAEKLNIQSAAF 112 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w--~~---~vA~~lgIP~~~f 112 (125)
..+.++++.+.+ ..+.||++....+- +. .+|++.|+|.+.+
T Consensus 193 ~~l~~l~~~ik~----~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 193 ADIAAFQNAIKN----RQIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred HHHHHHHHHHHh----CCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 345666666554 36889999987753 33 5699999998776
No 88
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=53.81 E-value=0.87 Score=35.10 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=50.9
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCccc---ccHH-HHHHHHHHHchHHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDR---SELG-KLTESLMRVMPRKREELIKD 76 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~ 76 (125)
++.|++||++||++++..+. .+... ....++++.++.+.+.++.. .+.. ..+... .....+.+.++.
T Consensus 20 ~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 90 (500)
T PF00201_consen 20 AEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISKFFSES--SFANSFWEMFKM 90 (500)
T ss_dssp HHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHHHHHHH--CCHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHHHhhhc--ccchhHHHHHHH
Confidence 36789999999999864321 11111 12368888888765433211 1111 111111 111233343333
Q ss_pred hhhcCCCCCeeE--EEecCCcccHHHHHHHhCCceEEEcchhH
Q 039753 77 SNARETHENITY--VIADGNVEQGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 77 l~~~~~~~~~~~--iI~D~~~~w~~~vA~~lgIP~~~f~t~~a 117 (125)
...-.......| ++.|...-|..+-++--.+..-.|++++.
T Consensus 91 ~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~ 133 (500)
T PF00201_consen 91 LNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGL 133 (500)
T ss_dssp HHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhH
Confidence 221000023456 99999888888887777889999998654
No 89
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=53.75 E-value=79 Score=22.53 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=43.2
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhc
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDSNAR 80 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (125)
|+.|..+|+.|++++....... ... ..+++++.++.. .. .....+... ..+..++++
T Consensus 20 ~~~L~~~g~~v~v~~~~~~~~~---~~~-----~~~~~~~~~~~~--~~----~~~~~~~~~-----~~l~~~~~~---- 76 (355)
T cd03819 20 ARALVERGHRSLVASAGGRLVA---ELE-----AEGSRHIKLPFI--SK----NPLRILLNV-----ARLRRLIRE---- 76 (355)
T ss_pred HHHHHHcCCEEEEEcCCCchHH---HHH-----hcCCeEEEcccc--cc----chhhhHHHH-----HHHHHHHHH----
Confidence 4677889999999876432211 111 125666655421 11 111111111 112333332
Q ss_pred CCCCCeeEEEecC-CcccHHH-HHHHhCCceEEEc
Q 039753 81 ETHENITYVIADG-NVEQGIK-VAEKLNIQSAAFW 113 (125)
Q Consensus 81 ~~~~~~~~iI~D~-~~~w~~~-vA~~lgIP~~~f~ 113 (125)
.+++.|++.. ...|... .++..|+|.+..+
T Consensus 77 ---~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~ 108 (355)
T cd03819 77 ---EKVDIVHARSRAPAWSAYLAARRTRPPFVTTV 108 (355)
T ss_pred ---cCCCEEEECCCchhHHHHHHHHhcCCCEEEEe
Confidence 3577777654 3456444 4567789977544
No 90
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=53.70 E-value=37 Score=24.08 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQ 108 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP 108 (125)
...+.++++++.+.| -.|.++|+|+-.. -..+-++|||-
T Consensus 195 ~~~l~~iI~~l~~~g--~~VvAivsD~g~~-N~~~w~~Lgi~ 233 (236)
T PF12017_consen 195 ADILKNIIEKLHEIG--YNVVAIVSDMGSN-NISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEECCCCcc-hHHHHHHcCCC
Confidence 456788888887655 5789999997644 56677888873
No 91
>PRK04031 DNA primase; Provisional
Probab=52.98 E-value=34 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEEE
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~f 112 (125)
-++++++..+.... +.+..||.|...+. ..|+|.+-||..++-
T Consensus 343 ~~v~dl~~~l~~~~--~~~~~iv~DgiitQrl~D~a~~kgv~~iig 386 (408)
T PRK04031 343 VPVRDLVDKLEEAE--DKVYAIVFDGIITQRLLDLASEKGVKYLIG 386 (408)
T ss_pred eeHHHHHHHHHhcC--CCCeEEEECCeecHHHHHHHHHCCCcEEEE
Confidence 45788888876543 47899999999885 999999999987764
No 92
>PLN02954 phosphoserine phosphatase
Probab=52.48 E-value=30 Score=23.45 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~ 109 (125)
..+.++++++.+.+.+ -+-+||+...-..+..+.+++|++.
T Consensus 85 l~pg~~e~l~~l~~~g---~~~~IvS~~~~~~i~~~l~~~gi~~ 125 (224)
T PLN02954 85 LSPGIPELVKKLRARG---TDVYLVSGGFRQMIAPVAAILGIPP 125 (224)
T ss_pred CCccHHHHHHHHHHCC---CEEEEECCCcHHHHHHHHHHhCCCh
Confidence 3467888888887543 4668999999999999999999984
No 93
>PRK15183 Vi polysaccharide biosynthesis protein TviA; Provisional
Probab=52.47 E-value=9.6 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC--ceEEEcchhHH
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI--QSAAFWPAAAA 118 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI--P~~~f~t~~a~ 118 (125)
.++++-++.+.++ + .+.-|-.++|-|||+ |+|.+.+-+..
T Consensus 100 gmeelqdrfmns~-----s-----t~yrwrke~a~kfgvr~prylllpdsvt 141 (143)
T PRK15183 100 GMEELQDRFMNSS-----S-----TMYRWRKELAVKFGVREPRYLLLPDSVT 141 (143)
T ss_pred cHHHHHHHHccCh-----H-----HHHHHHHHHHHHhcCCCCceEecCcccc
Confidence 4566656655431 1 245699999999998 89998887654
No 94
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.78 E-value=53 Score=23.67 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcch
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~ 115 (125)
.+.++++.+.+ ..+.||+++...+ -+..+|++.|++.+.+.+.
T Consensus 216 ~l~~l~~~ik~----~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l 260 (286)
T cd01019 216 RLAKIRKEIKE----KGATCVFAEPQFHPKIAETLAEGTGAKVGELDPL 260 (286)
T ss_pred HHHHHHHHHHH----cCCcEEEecCCCChHHHHHHHHhcCceEEEeccc
Confidence 44555555544 4689999998775 5888999999988877544
No 95
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.64 E-value=95 Score=23.35 Aligned_cols=28 Identities=14% Similarity=-0.061 Sum_probs=17.7
Q ss_pred CeeEEE---ecCCcccHHHHHHHhCCceEEEc
Q 039753 85 NITYVI---ADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI---~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
+|+.++ +|. .+.....|++.|+|.+...
T Consensus 124 ~Pd~v~~~~~~~-~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 124 RPKLVIIMETEL-WPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred CCCEEEEEecch-hHHHHHHHHHCCCCEEEEe
Confidence 455554 342 3445566789999998764
No 96
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=49.47 E-value=1.1e+02 Score=22.77 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcchhHH
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
..-++.++++.+. .+|..||++-+.. ...++|++.+||.+..--++..
T Consensus 69 ~~r~~~~~~l~~~---~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t~~ 118 (308)
T PRK05428 69 EERKERLKKLFSL---EPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLSTTR 118 (308)
T ss_pred HHHHHHHHHHhCC---CCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcHHH
Confidence 3445566666543 4788899998774 5889999999998876665543
No 97
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=49.31 E-value=28 Score=22.47 Aligned_cols=41 Identities=29% Similarity=0.150 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
.+.+.++++.+...+ -..+||+...-.++..+++++|+..+
T Consensus 75 ~~g~~~~l~~l~~~g---~~~~ivS~~~~~~i~~~~~~~g~~~~ 115 (177)
T TIGR01488 75 RPGARELISWLKERG---IDTVIVSGGFDFFVEPVAEKLGIDDV 115 (177)
T ss_pred CcCHHHHHHHHHHCC---CEEEEECCCcHHHHHHHHHHcCCchh
Confidence 356788888876543 45689999988899999999999753
No 98
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=48.75 E-value=25 Score=24.25 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=33.3
Q ss_pred HchHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 65 VMPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 65 ~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
.+.+..+++++.+.+.+ --.+||+-.+..++..+|+++|+-.+
T Consensus 77 ~l~~ga~elv~~lk~~G---~~v~iiSgg~~~lv~~ia~~lg~d~~ 119 (212)
T COG0560 77 RLTPGAEELVAALKAAG---AKVVIISGGFTFLVEPIAERLGIDYV 119 (212)
T ss_pred cCCccHHHHHHHHHHCC---CEEEEEcCChHHHHHHHHHHhCCchh
Confidence 34566778888877654 34588999999999999999999654
No 99
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=48.59 E-value=20 Score=24.93 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=10.5
Q ss_pred CCeeEEEecCCc
Q 039753 84 ENITYVIADGNV 95 (125)
Q Consensus 84 ~~~~~iI~D~~~ 95 (125)
.+++|||+||.-
T Consensus 135 r~VdvVlSDMap 146 (232)
T KOG4589|consen 135 RPVDVVLSDMAP 146 (232)
T ss_pred CcccEEEeccCC
Confidence 689999999975
No 100
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=48.45 E-value=8.2 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=12.9
Q ss_pred CcccccCCCEEEEEeCcc
Q 039753 1 SQWLVKHGFTITLSNTEY 18 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~ 18 (125)
++.|+++|++||+++...
T Consensus 22 ~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 22 ARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHTT-EEEEEESS-
T ss_pred HHHHHHCCCEEEEEEcCC
Confidence 356888999999997653
No 101
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=48.42 E-value=52 Score=19.84 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
+.++++.++. +.+..+-.|.--. ++|+++|| |.+.++-
T Consensus 44 ~~l~~la~~~------~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f~ 84 (113)
T cd02957 44 SHLEELAAKY------PETKFVKINAEKA---FLVNYLDIKVLPTLLVYK 84 (113)
T ss_pred HHHHHHHHHC------CCcEEEEEEchhh---HHHHhcCCCcCCEEEEEE
Confidence 3445554443 2345566665332 88999876 7777663
No 102
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=48.41 E-value=23 Score=26.97 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=22.8
Q ss_pred eeEEEecCCccc--HHHHHHHhCCceEE
Q 039753 86 ITYVIADGNVEQ--GIKVAEKLNIQSAA 111 (125)
Q Consensus 86 ~~~iI~D~~~~w--~~~vA~~lgIP~~~ 111 (125)
=.++-+|.|+++ ..++|.+.||-.++
T Consensus 331 G~vlASDAFFPF~D~Id~Aa~~GV~aIi 358 (390)
T PRK07106 331 GVALGSDAFFPFGDNIERAAKSGVKYIA 358 (390)
T ss_pred CeEEEecccCCCCchHHHHHHcCCEEEE
Confidence 368999999987 89999999998775
No 103
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=48.02 E-value=1.2e+02 Score=23.04 Aligned_cols=103 Identities=9% Similarity=0.090 Sum_probs=46.0
Q ss_pred CcccccCCC--EEEEEeCccchHHHhhhh-hhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHh
Q 039753 1 SQWLVKHGF--TITLSNTEYNHRQVMNIL-EEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDS 77 (125)
Q Consensus 1 a~~L~~~G~--~VT~v~t~~~~~~~~~~~-~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 77 (125)
|+.|+.+|+ .|++++............ ........+++++.+|.+-.......+...++.. +...+.+++++.
T Consensus 36 a~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 111 (439)
T TIGR02472 36 ARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDE----LADNLLQHLRQQ 111 (439)
T ss_pred HHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHH----HHHHHHHHHHHc
Confidence 467888986 899998542210000000 0000112467777776321100011112112211 112233333321
Q ss_pred hhcCCCCCeeEEEecCC-ccc-HHHHHHHhCCceEEE
Q 039753 78 NARETHENITYVIADGN-VEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 78 ~~~~~~~~~~~iI~D~~-~~w-~~~vA~~lgIP~~~f 112 (125)
. .+|+.|-+-.. .++ +..+++.+|+|.+.-
T Consensus 112 ---~--~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t 143 (439)
T TIGR02472 112 ---G--HLPDLIHAHYADAGYVGARLSRLLGVPLIFT 143 (439)
T ss_pred ---C--CCCCEEEEcchhHHHHHHHHHHHhCCCEEEe
Confidence 1 25777766542 233 445677789997653
No 104
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=47.48 E-value=12 Score=19.85 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=8.5
Q ss_pred HHHHHHHhCCce
Q 039753 98 GIKVAEKLNIQS 109 (125)
Q Consensus 98 ~~~vA~~lgIP~ 109 (125)
-.+||++|||+.
T Consensus 25 ~~~ia~~fgv~~ 36 (53)
T PF04218_consen 25 KRDIAREFGVSR 36 (53)
T ss_dssp HHHHHHHHT--C
T ss_pred HHHHHHHhCCCH
Confidence 578999999985
No 105
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=47.29 E-value=63 Score=20.78 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCc---------ccHHHHHHHhCCceEEEcc
Q 039753 70 REELIKDSNARETHENITYVIADGNV---------EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~---------~w~~~vA~~lgIP~~~f~t 114 (125)
+.+.++++. ...+++|.|.-. .+..+++++++.|.+.-..
T Consensus 89 i~~~~~~l~-----~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~ 137 (166)
T TIGR00347 89 LSKHLRTLE-----QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVR 137 (166)
T ss_pred HHHHHHHHH-----hcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEEC
Confidence 455555543 246899988842 2677899999999765443
No 106
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=47.14 E-value=44 Score=20.91 Aligned_cols=42 Identities=21% Similarity=0.126 Sum_probs=24.2
Q ss_pred HHHHHHhhhcCCCCCeeEEEecCCc-----ccHHHHHHHhCCceEEEcch
Q 039753 71 EELIKDSNARETHENITYVIADGNV-----EQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 71 ~~~l~~l~~~~~~~~~~~iI~D~~~-----~w~~~vA~~lgIP~~~f~t~ 115 (125)
+++++.+.+. .+|..++-...- .-...+|+++|+|.+.-+..
T Consensus 2 ~~~~~~L~~A---~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 2 DEAADLLSSA---KRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHHH----SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHHhC---CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 3444555443 467544443322 23678999999999766543
No 107
>PRK11524 putative methyltransferase; Provisional
Probab=46.98 E-value=50 Score=23.75 Aligned_cols=32 Identities=13% Similarity=-0.085 Sum_probs=23.9
Q ss_pred CeeEEEecCCccc--HHHHHHHhCCceEEEcchh
Q 039753 85 NITYVIADGNVEQ--GIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~lgIP~~~f~t~~ 116 (125)
++.=+|.|.|++- +.-+|+++|--.+.+=...
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~ 240 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS 240 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH
Confidence 4556899999974 6678999998887765443
No 108
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=46.94 E-value=73 Score=20.45 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=21.7
Q ss_pred CeeEEEecCCcccHHHHHHHhC---CceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLN---IQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lg---IP~~~f~t~ 115 (125)
++.+...|.=- -.++|+++| ||+.+||--
T Consensus 69 ~v~~akVDiD~--~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 69 TWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ceEEEEEECCC--CHHHHHHcCCccCCEEEEEEC
Confidence 47777777643 488999998 588888743
No 109
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=46.04 E-value=49 Score=21.78 Aligned_cols=41 Identities=29% Similarity=0.249 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
.+.+.++|+.+...+ -..+||+...-.+...+++++|+..+
T Consensus 82 ~~g~~e~l~~l~~~g---~~~~IvS~~~~~~~~~~l~~~g~~~~ 122 (201)
T TIGR01491 82 RDYAEELVRWLKEKG---LKTAIVSGGIMCLAKKVAEKLNPDYV 122 (201)
T ss_pred CccHHHHHHHHHHCC---CEEEEEeCCcHHHHHHHHHHhCCCeE
Confidence 445677888886543 46789999988899999999998654
No 110
>PF13223 DUF4031: Protein of unknown function (DUF4031)
Probab=45.67 E-value=7.2 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=23.1
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
.-+-+++|. ..-..+.|+++|||+-.|-.
T Consensus 14 ~w~HL~aDt-~~ELHafA~riGv~rr~fq~ 42 (83)
T PF13223_consen 14 LWSHLVADT-LDELHAFAARIGVPRRWFQR 42 (83)
T ss_pred EeeeeccCC-HHHHHHHHHHcCCCHHHHcC
Confidence 345689998 77788999999999866644
No 111
>PF07837 FTCD_N: Formiminotransferase domain, N-terminal subdomain; InterPro: IPR012886 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. This entry represents the N-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 2PFD_C 1QD1_B.
Probab=45.44 E-value=20 Score=24.30 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=10.2
Q ss_pred HHHHHHHhCCceEEEc
Q 039753 98 GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~ 113 (125)
+.++++++|||.|.|-
T Consensus 110 g~~i~~~l~vPVyLYg 125 (178)
T PF07837_consen 110 GERIGEELGVPVYLYG 125 (178)
T ss_dssp HHHHHHHHT--EEEEE
T ss_pred HHHHHHhhCCCEEEeh
Confidence 4556678899999875
No 112
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=45.17 E-value=43 Score=26.47 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=20.6
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.|+.+. |-..+|+++|||.+..
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~i 398 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVI 398 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEe
Confidence 688898885 7778899999998654
No 113
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=44.53 E-value=87 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=18.8
Q ss_pred EEecCCcc-cHHHHHHHhCCceEEEcc
Q 039753 89 VIADGNVE-QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 89 iI~D~~~~-w~~~vA~~lgIP~~~f~t 114 (125)
++.=...+ -+..+|+++|+|++.|-.
T Consensus 281 v~~gGaG~~~a~~lA~~lg~~~v~~~~ 307 (318)
T TIGR03123 281 VVAAGAGEFLAKEAAARLGRECIDVDE 307 (318)
T ss_pred eEEecchHHHHHHHHHHcCCCeecHHH
Confidence 44444443 588999999999887753
No 114
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.93 E-value=34 Score=20.28 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=26.7
Q ss_pred CeeEEEecCCcc---c-HHHHHHHhCCceEEEcchhHHHH
Q 039753 85 NITYVIADGNVE---Q-GIKVAEKLNIQSAAFWPAAAAVL 120 (125)
Q Consensus 85 ~~~~iI~D~~~~---w-~~~vA~~lgIP~~~f~t~~a~~~ 120 (125)
..-.++.|.... | +.+.|++.|+|.+.....++..+
T Consensus 50 D~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 50 DLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 345567787653 4 78899999999999886776654
No 115
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.35 E-value=55 Score=23.63 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEE
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAA 111 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~ 111 (125)
.+.++++.+.+ ..+.||+++...+ -+..+|++.|+|.+.
T Consensus 214 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~ia~~~gv~v~~ 254 (287)
T cd01137 214 QVATLIEQVKK----EKVPAVFVESTVNDRLMKQVAKETGAKIGG 254 (287)
T ss_pred HHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHhCCcccc
Confidence 34445555443 3688999998775 478899999998643
No 116
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=42.93 E-value=29 Score=21.34 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=21.8
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeec
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIP 43 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp 43 (125)
+.|..+|++|++++.......... ..++++..++
T Consensus 18 ~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~ 51 (139)
T PF13477_consen 18 KELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLP 51 (139)
T ss_pred HHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEec
Confidence 457778999999998443321111 1368888775
No 117
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=42.90 E-value=14 Score=31.37 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCceEEeecCCCCCCccc---ccHHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc
Q 039753 35 DQIHLISIPDGLETWEDR---SELGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV 95 (125)
Q Consensus 35 ~~i~~~~lp~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~ 95 (125)
|.+||=++|.|--+..-. .++.+++..+ -++.+++.|+.+.. .+.+++|||...
T Consensus 687 PpFRFGTVpngSTE~niR~Nyp~MHeYM~ky---Nq~~v~dal~sLK~----gKLDAFIyDaAV 743 (1258)
T KOG1053|consen 687 PPFRFGTVPNGSTERNIRSNYPEMHEYMVKY---NQPGVEDALESLKN----GKLDAFIYDAAV 743 (1258)
T ss_pred CCcccccCCCCchhhhHHhccHHHHHHHHHh---ccCchHHHHHHHhc----ccchhHHHHHHH
Confidence 568888887653222111 2334444433 35678999999876 479999999743
No 118
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.59 E-value=51 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=20.7
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.||.+. +...+|+++|||.+..
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 688888875 7788999999998755
No 119
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=42.48 E-value=67 Score=20.15 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=17.6
Q ss_pred EEEecCCcccHHHHHHHhCCceEEE
Q 039753 88 YVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 88 ~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
.+|-|-. +-...|++.|++.+.+
T Consensus 154 ~~vgD~~--~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 154 LFVGDSP--SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEEESSH--HHHHHHHHTTSEEEEE
T ss_pred EEEeCCH--HHHHHHHHcCCeEEeC
Confidence 4555544 8899999999998754
No 120
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=42.32 E-value=79 Score=23.76 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=18.9
Q ss_pred CCeeEEEe-cCCccc---HHHHHHHhCCceEEE
Q 039753 84 ENITYVIA-DGNVEQ---GIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~-D~~~~w---~~~vA~~lgIP~~~f 112 (125)
.+|++||. |. .+. ....|+++|||.+.+
T Consensus 88 ~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 88 AKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred cCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEE
Confidence 36776665 64 332 334788999999988
No 121
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.25 E-value=97 Score=24.69 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
....++.+.++.++ ..++||.|.. +.+.|+++|++.+....
T Consensus 131 ~~e~~~~~~~l~~~----G~~~viG~~~---~~~~A~~~gl~~ili~s 171 (526)
T TIGR02329 131 EEDARSCVNDLRAR----GIGAVVGAGL---ITDLAEQAGLHGVFLYS 171 (526)
T ss_pred HHHHHHHHHHHHHC----CCCEEECChH---HHHHHHHcCCceEEEec
Confidence 34667777777664 4789999984 57999999999987654
No 122
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=42.21 E-value=13 Score=20.41 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=8.4
Q ss_pred CCceEEeecC
Q 039753 35 DQIHLISIPD 44 (125)
Q Consensus 35 ~~i~~~~lp~ 44 (125)
.||+||++|-
T Consensus 22 ~GIRFVpiPv 31 (61)
T PF07131_consen 22 IGIRFVPIPV 31 (61)
T ss_pred cCceeecccc
Confidence 4899999984
No 123
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=42.10 E-value=81 Score=21.46 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=19.9
Q ss_pred CCeeEEEec----CCcccHHHHHHHh-----CCceEEEcc
Q 039753 84 ENITYVIAD----GNVEQGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D----~~~~w~~~vA~~l-----gIP~~~f~t 114 (125)
.+|+|+|.| +-.+-+.++.+++ +++.++|..
T Consensus 46 ~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~ 85 (207)
T PRK15411 46 LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMA 85 (207)
T ss_pred cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEEC
Confidence 368999999 3333455666654 466777754
No 124
>PHA02542 41 41 helicase; Provisional
Probab=42.04 E-value=65 Score=25.26 Aligned_cols=44 Identities=9% Similarity=-0.093 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCccc----------------------HHHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQ----------------------GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w----------------------~~~vA~~lgIP~~~f~ 113 (125)
.++..++++....+ ..+++||.|.+.-- ...+|+++|||.++..
T Consensus 286 ~ir~~~rrlk~~~g-~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~ls 351 (473)
T PHA02542 286 HFRALLNELKLKKN-FKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAA 351 (473)
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 45555555543221 24789999984321 2458999999998764
No 125
>PRK13699 putative methylase; Provisional
Probab=41.84 E-value=74 Score=22.20 Aligned_cols=31 Identities=6% Similarity=-0.148 Sum_probs=22.7
Q ss_pred eeEEEecCCccc--HHHHHHHhCCceEEEcchh
Q 039753 86 ITYVIADGNVEQ--GIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 86 ~~~iI~D~~~~w--~~~vA~~lgIP~~~f~t~~ 116 (125)
+.=+|.|.|++. +...|.++|-..+.+=...
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~ 195 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCH
Confidence 445899999975 6667888898887664433
No 126
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=41.69 E-value=49 Score=25.41 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.3
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.+|.+. +...+|+|+|||.+..
T Consensus 372 ~~dliiG~s---~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 372 KIDVLIGNS---YGRRIAEKLGIPLIRI 396 (429)
T ss_pred CCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 578888874 5789999999998744
No 127
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=41.63 E-value=98 Score=23.19 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEE-ecCC--cccHHHHHHHhCCceEEEcchhHH
Q 039753 68 RKREELIKDSNARETHENITYVI-ADGN--VEQGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI-~D~~--~~w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
...++.|++-.-+. ..++++| .|.. ...+.-+|+++|+|.+-....++.
T Consensus 56 eAa~~ALekAGL~~--~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ACST 107 (327)
T TIGR02845 56 DAVNLALKKANLKK--DDVDFFLAGDLLNQIITANFVARDLGIPFLGLYGACST 107 (327)
T ss_pred HHHHHHHHHcCCCH--HHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEeccCHH
Confidence 34455555432111 2466654 4543 235777999999998666554444
No 128
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=41.53 E-value=86 Score=19.45 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
+.+.++++.++.. ..+..+..|.=- -..+|.++|| |.++|+-
T Consensus 47 i~P~leela~e~~-----~~v~f~kVdid~--~~~la~~f~V~sIPTli~fk 91 (111)
T cd02965 47 VAVVLPELLKAFP-----GRFRAAVVGRAD--EQALAARFGVLRTPALLFFR 91 (111)
T ss_pred hHhHHHHHHHHCC-----CcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEE
Confidence 3445555555542 234333333322 2499999974 7777763
No 129
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=41.00 E-value=1.2e+02 Score=21.05 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCccc---ccHHHHHHHHHHHchHHHHHHHHHhhhc
Q 039753 7 HGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDR---SELGKLTESLMRVMPRKREELIKDSNAR 80 (125)
Q Consensus 7 ~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (125)
+|.+|+..+...-.+.+.+.. +++++..+..+++.-.. .++.++.. ....+-..++++++.+.
T Consensus 8 ~~~riiL~S~s~rrk~i~~~~--------G~~~~~~~S~feEnl~k~~~~~p~~yv~---~tA~~KA~~I~erL~~~ 73 (209)
T KOG1509|consen 8 KGKRIILASASPRRKQILAEM--------GLNLEVVVSTFEENLIKSSFETPEDYVV---ETAKQKAEEIIERLGDG 73 (209)
T ss_pred cCcEEEEecCCchHHHHHHHc--------CCceEEEeccchhhchhhccCCHHHHHH---HHHHHHHHHHHHHhhcc
Confidence 577887777665555555442 57888888766544211 23444432 23345567777777643
No 130
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=40.86 E-value=60 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.2
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.||.+. +...+|+++|||.+..
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 688888764 6778999999998755
No 131
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=40.81 E-value=55 Score=19.13 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=19.0
Q ss_pred CCeeEEEecCCcccHHHHHHHhCC---ceEEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNI---QSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f 112 (125)
+.+...++|.- -..++|+++|| |.+++
T Consensus 42 ~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 42 PNIEHEMIDGA--LFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred CCceEEEEEhH--hCHHHHHHcCCccCCEEEE
Confidence 46888899854 23689999986 55543
No 132
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=40.77 E-value=1e+02 Score=19.97 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=19.2
Q ss_pred eEEEecCCcccHHHHHHHhCCceEE
Q 039753 87 TYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 87 ~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
.++|-|. .+-..-|++.|++.+.
T Consensus 161 ~v~vgD~--~~di~aA~~aG~~~i~ 183 (185)
T TIGR01990 161 CIGIEDA--QAGIEAIKAAGMFAVG 183 (185)
T ss_pred eEEEecC--HHHHHHHHHcCCEEEe
Confidence 5678887 4889999999999875
No 133
>PF14174 YycC: YycC-like protein
Probab=40.75 E-value=22 Score=18.80 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.9
Q ss_pred HHHHHHHhCCce
Q 039753 98 GIKVAEKLNIQS 109 (125)
Q Consensus 98 ~~~vA~~lgIP~ 109 (125)
+..+|+++|+|-
T Consensus 11 A~kLs~~L~vPl 22 (53)
T PF14174_consen 11 AVKLSKKLGVPL 22 (53)
T ss_pred HHHHHHHHCCcH
Confidence 677899999983
No 134
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=40.34 E-value=91 Score=19.37 Aligned_cols=53 Identities=19% Similarity=0.376 Sum_probs=28.1
Q ss_pred HHHHHHHchH-HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 59 TESLMRVMPR-KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 59 ~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+.++++.++. .+++++..+...++ ++-.||..=--..-=..+|.+-+.|-+++
T Consensus 10 ~~sL~KklK~k~le~L~~AV~s~g~-~~t~CV~i~~~~dgrl~~~~~~~~phvi~ 63 (109)
T smart00523 10 TESLLKKLKKKQLEELLQAVESKGG-PPTRCVLIPRSLDGRLQVAHRKGLPHVLY 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCeEEeCcccCcccccccCCCCCcEEE
Confidence 3344444433 78888888876553 33357765422222233466666666553
No 135
>PLN03171 chalcone synthase-like protein; Provisional
Probab=40.27 E-value=77 Score=24.14 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=27.5
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEe-----cCCcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIA-----DGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~-----D~~~~w~~~vA~~lgIP~ 109 (125)
.....+++|++..-.. ..+++||+ |.+-+.+..+++++|++.
T Consensus 112 a~~Aa~~aL~~ag~~~--~dId~li~~t~t~~~~P~~a~~v~~~LGl~~ 158 (399)
T PLN03171 112 AAEAAKKAIAEWGRPA--ADITHLVVTTNSGAHIPGVDFRLVPLLGLRP 158 (399)
T ss_pred HHHHHHHHHHHcCCCH--HHCCEEEEEcCCCCCCCchHHHHHHHhCCCc
Confidence 3344555555542111 35789888 766567888999999974
No 136
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.20 E-value=48 Score=25.91 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=20.9
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
.+|+.+|.. ++...+|+++|||.+
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEE
Confidence 368899886 888999999999987
No 137
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=39.27 E-value=20 Score=18.29 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=9.4
Q ss_pred HHHHHHHhCCceEE
Q 039753 98 GIKVAEKLNIQSAA 111 (125)
Q Consensus 98 ~~~vA~~lgIP~~~ 111 (125)
...+|+++|||.-.
T Consensus 19 ~r~AA~~ygVp~sT 32 (45)
T PF05225_consen 19 IRKAAKKYGVPRST 32 (45)
T ss_dssp HHHHHHHHT--HHH
T ss_pred HHHHHHHHCcCHHH
Confidence 57899999999643
No 138
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=39.09 E-value=1.1e+02 Score=22.60 Aligned_cols=40 Identities=18% Similarity=0.084 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
+.++++++.+.+.+ -..+|++..+..++..+.+++|+..+
T Consensus 184 pGa~elL~~Lk~~G---~~~aIvSgg~~~~~~~l~~~Lgld~~ 223 (322)
T PRK11133 184 PGLTELVLKLQALG---WKVAIASGGFTYFADYLRDKLRLDAA 223 (322)
T ss_pred hhHHHHHHHHHHcC---CEEEEEECCcchhHHHHHHHcCCCeE
Confidence 34566666665432 35689999998889999999999653
No 139
>PRK12404 stage V sporulation protein AD; Provisional
Probab=38.61 E-value=87 Score=23.50 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEe-cCC--cccHHHHHHHhCCceEEEcch
Q 039753 67 PRKREELIKDSNARETHENITYVIA-DGN--VEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~-D~~--~~w~~~vA~~lgIP~~~f~t~ 115 (125)
....+..|++-.-+. ..++.++. |.. ..-+.-+|+++|||.+-....
T Consensus 59 ~EA~~~AL~kAGI~~--~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gA 108 (334)
T PRK12404 59 EEACSRAIEKAKLRK--EDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGA 108 (334)
T ss_pred HHHHHHHHHHcCCCH--HHCCEEEEEecCCCcCcHHHHHHHhCCCccceeec
Confidence 344555555432111 24666555 665 334568999999997544433
No 140
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=38.52 E-value=86 Score=23.44 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=24.6
Q ss_pred Cee-EEEecCCc-ccHHHHHHHhCCceEEEcchh
Q 039753 85 NIT-YVIADGNV-EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~-~iI~D~~~-~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.|+ .||.|.-. ..+..=|.++|||.+.+.=+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 455 57778766 578889999999999886443
No 141
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=38.39 E-value=70 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
.+|+.+|.+. +...+|+++|||.+.+
T Consensus 370 ~~pdliig~~---~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 370 EPVDLLIGNS---HGRYLARDLGIPLVRV 395 (428)
T ss_pred cCCCEEEECc---hhHHHHHhcCCCEEEe
Confidence 3689999885 5689999999998743
No 142
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=37.72 E-value=97 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=21.1
Q ss_pred CeeEEEecCCcc---------cHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVE---------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~---------w~~~vA~~lgIP~~~f~ 113 (125)
..+++|.|.-.+ ...|+|+.++.|.+.=.
T Consensus 103 ~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~ 140 (222)
T PRK00090 103 QYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVV 140 (222)
T ss_pred hCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEE
Confidence 567888886533 46789999999986544
No 143
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=37.71 E-value=51 Score=21.44 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCce
Q 039753 72 ELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 72 ~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~ 109 (125)
++++.+.+++ -..+||+...-.++..+|+++|++.
T Consensus 96 e~i~~~~~~~---~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNG---IKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTT---SEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCC---CEEEEECCCcHHHHHHHHHHcCCCc
Confidence 6676665543 4568999998889999999999996
No 144
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=37.48 E-value=86 Score=24.08 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCCCCCeeEEEe--cCCcccHHH-------HHHHhCCceEEEcchhH
Q 039753 70 REELIKDSNARETHENITYVIA--DGNVEQGIK-------VAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~--D~~~~w~~~-------vA~~lgIP~~~f~t~~a 117 (125)
+++.++++.. +++-||++ |.|.+-..| ++++.|||-++=..++.
T Consensus 144 ie~~i~~~G~----~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgv 196 (389)
T PF05889_consen 144 IEAKIEELGA----DNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGV 196 (389)
T ss_dssp HHHHHHHHCG----GGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTT
T ss_pred HHHHHHHhCC----CCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhh
Confidence 4444555532 45778886 556666666 78999999998766665
No 145
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=37.46 E-value=2e+02 Score=22.55 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=30.3
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcc----------c---HHHHHHHhCCceEE
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVE----------Q---GIKVAEKLNIQSAA 111 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~----------w---~~~vA~~lgIP~~~ 111 (125)
....+++.+....... .+|.|+|.+...+ | ..++++|.||+.++
T Consensus 205 ~~~~~e~~i~~~~~~~--~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~ 261 (447)
T COG0160 205 ALEYIERALFDLEVGP--EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIA 261 (447)
T ss_pred HHHHHHHHHHhhcCCC--CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3445666666654433 5799999987655 3 56788999998775
No 146
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=36.77 E-value=46 Score=17.71 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=21.0
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
...+-+|+.-..+--.+.|.+.|||.+.
T Consensus 33 ~~~THLI~~~~~~~K~~~A~~~gi~vV~ 60 (63)
T PF12738_consen 33 KKTTHLICSSPEGKKYRKAKEWGIPVVS 60 (63)
T ss_dssp TT-SEEEEES--HHHHHHHHHCTSEEEE
T ss_pred CCceEEEEeCCCcHHHHHHHHCCCcEEC
Confidence 4678899988888888899999999874
No 147
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=36.55 E-value=92 Score=18.36 Aligned_cols=29 Identities=10% Similarity=0.306 Sum_probs=18.3
Q ss_pred eeEEEecCCcccHHHHHHHhCC---ceEEEcchh
Q 039753 86 ITYVIADGNVEQGIKVAEKLNI---QSAAFWPAA 116 (125)
Q Consensus 86 ~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~~ 116 (125)
+...-.|. ..-.++++++|| |.+.|+..+
T Consensus 57 ~~~~~vd~--d~~~~l~~~~~v~~~Ptl~~~~~g 88 (108)
T cd02996 57 VVWGKVDC--DKESDIADRYRINKYPTLKLFRNG 88 (108)
T ss_pred EEEEEEEC--CCCHHHHHhCCCCcCCEEEEEeCC
Confidence 44444443 334789999986 777776544
No 148
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.46 E-value=70 Score=24.46 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.5
Q ss_pred CeeEEEec-CCcccHHHHHHHhCCceEEEc-chh
Q 039753 85 NITYVIAD-GNVEQGIKVAEKLNIQSAAFW-PAA 116 (125)
Q Consensus 85 ~~~~iI~D-~~~~w~~~vA~~lgIP~~~f~-t~~ 116 (125)
..+.+++. ....++..+.+++|+|.+.+. +.+
T Consensus 223 ~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~p~G 256 (428)
T cd01965 223 KATIALGEYSGRKAAKALEEKFGVPYILFPTPIG 256 (428)
T ss_pred cEEEEEChhhhHHHHHHHHHHHCCCeeecCCCcC
Confidence 56777777 555788888889999999776 554
No 149
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.10 E-value=34 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=22.2
Q ss_pred cccccCCCEEEEEeC--ccchHHHhhhhhhccccCCCceEEeecC
Q 039753 2 QWLVKHGFTITLSNT--EYNHRQVMNILEEKNYVLDQIHLISIPD 44 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t--~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 44 (125)
.-|+..|++|+++-- +..+..+.+ +|+|+++.+|.
T Consensus 34 ~Sla~~gf~VdliGy~~s~p~e~l~~--------hprI~ih~m~~ 70 (444)
T KOG2941|consen 34 LSLAKLGFQVDLIGYVESIPLEELLN--------HPRIRIHGMPN 70 (444)
T ss_pred HHHHHcCCeEEEEEecCCCChHHHhc--------CCceEEEeCCC
Confidence 456778888888732 123333322 37899999984
No 150
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=35.96 E-value=30 Score=21.87 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=14.9
Q ss_pred cCCcccHHHHHHHhCCceEE
Q 039753 92 DGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 92 D~~~~w~~~vA~~lgIP~~~ 111 (125)
+.|+--+..+|+++|||.+.
T Consensus 87 ~~f~~aa~~ia~ky~VPll~ 106 (122)
T PF07972_consen 87 DNFCLAADKIAEKYGVPLLY 106 (122)
T ss_dssp GGTTHHHHHHHHHHT--EEE
T ss_pred HHHHHHHHHHHHHcCCCEEE
Confidence 66777789999999999764
No 151
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.71 E-value=19 Score=23.23 Aligned_cols=18 Identities=39% Similarity=0.542 Sum_probs=14.5
Q ss_pred cccccCCCEEEEEeCccc
Q 039753 2 QWLVKHGFTITLSNTEYN 19 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~ 19 (125)
.+|-.+||+||+..|+.-
T Consensus 26 ~klkkkgf~v~VaateAa 43 (148)
T COG4081 26 HKLKKKGFDVTVAATEAA 43 (148)
T ss_pred HHhhccCccEEEecCHhh
Confidence 567789999999988744
No 152
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.43 E-value=1.1e+02 Score=18.72 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
.+.++++-.+. +.+..+=.|.=- ..++|+++|| |...|+
T Consensus 40 ~P~~~~La~~y------~~v~Flkvdvde--~~~~~~~~~V~~~PTf~f~ 81 (106)
T KOG0907|consen 40 APKFEKLAEKY------PDVVFLKVDVDE--LEEVAKEFNVKAMPTFVFY 81 (106)
T ss_pred hhHHHHHHHHC------CCCEEEEEeccc--CHhHHHhcCceEeeEEEEE
Confidence 34455554443 335566567655 8899999997 666664
No 153
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=35.22 E-value=87 Score=23.94 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=20.6
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
.+|+.+|.- +-...+|+|+|||.+.+
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~ 374 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYY 374 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEe
Confidence 478899876 45778999999998653
No 154
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=34.94 E-value=37 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHHHhCCceEEEcch
Q 039753 98 GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~ 115 (125)
..+.|+|||+|.+.|-=+
T Consensus 142 lm~~AekF~lPiitfIDT 159 (317)
T COG0825 142 LMKLAEKFGLPIITFIDT 159 (317)
T ss_pred HHHHHHHhCCCEEEEecC
Confidence 467899999999998643
No 155
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=34.78 E-value=23 Score=17.73 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=7.8
Q ss_pred HHHHHHHhCCceE
Q 039753 98 GIKVAEKLNIQSA 110 (125)
Q Consensus 98 ~~~vA~~lgIP~~ 110 (125)
...+..+||||..
T Consensus 12 ~~~L~~~f~ip~~ 24 (40)
T PF02022_consen 12 AKALRHKFGIPRL 24 (40)
T ss_dssp HHHHHHHHT--HH
T ss_pred HHHHHHHHccCHH
Confidence 4567888888864
No 156
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=34.60 E-value=1.2e+02 Score=19.23 Aligned_cols=29 Identities=7% Similarity=0.254 Sum_probs=18.1
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
.+.++..|.-..-..++++++|| |.++|+
T Consensus 52 ~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~ 83 (142)
T cd02950 52 QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFL 83 (142)
T ss_pred CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEE
Confidence 35566666543322567888865 877777
No 157
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=34.39 E-value=95 Score=20.87 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
.+.++++++.+...+ -..+||+...-.+...+.+++|+..+
T Consensus 87 ~~g~~~~l~~l~~~g---~~~~IvS~~~~~~~~~~l~~~~i~~~ 127 (219)
T TIGR00338 87 TEGAEELVKTLKEKG---YKVAVISGGFDLFAEHVKDKLGLDAA 127 (219)
T ss_pred CCCHHHHHHHHHHCC---CEEEEECCCcHHHHHHHHHHcCCCce
Confidence 456788888887643 35689999887788889999999864
No 158
>TIGR02024 FtcD glutamate formiminotransferase. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.
Probab=34.38 E-value=36 Score=25.03 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=11.2
Q ss_pred HHHHHHHhCCceEEE
Q 039753 98 GIKVAEKLNIQSAAF 112 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f 112 (125)
+.++++++|||.|.|
T Consensus 112 g~~i~~~l~VPVyLY 126 (298)
T TIGR02024 112 GKRLGEELGVPVYLY 126 (298)
T ss_pred HHHHHHhhCCCEEEe
Confidence 455566778999988
No 159
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=34.32 E-value=1.2e+02 Score=18.91 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhC---CceEEEc
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLN---IQSAAFW 113 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lg---IP~~~f~ 113 (125)
|.+.++++.++.. ..+..+-.|.= -..++|+++| ||.+.|+
T Consensus 32 m~P~le~la~~~~-----~~v~f~kVDvD--~~~~la~~~~V~~iPTf~~f 75 (114)
T cd02954 32 MDEVLAKIAEDVS-----NFAVIYLVDID--EVPDFNKMYELYDPPTVMFF 75 (114)
T ss_pred HHHHHHHHHHHcc-----CceEEEEEECC--CCHHHHHHcCCCCCCEEEEE
Confidence 4455666665542 23555555553 3578999988 6887776
No 160
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=34.01 E-value=86 Score=22.81 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=29.3
Q ss_pred HchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCce
Q 039753 65 VMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQS 109 (125)
Q Consensus 65 ~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~ 109 (125)
.....++++|++..-+. ..++++|.--...+ ...+++++|+|.
T Consensus 227 ~~~~~i~~~L~~~g~~~--~did~~~~hq~~~~~~~~~~~~lgl~~ 270 (326)
T CHL00203 227 QVPAVIIKCLNALNISI--DEVDWFILHQANKRILEAIANRLSVPN 270 (326)
T ss_pred HHHHHHHHHHHHcCCCH--HHCCEEEECCCCHHHHHHHHHHhCCCH
Confidence 34455666666643211 36889998888876 455999999993
No 161
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=33.90 E-value=37 Score=23.90 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=16.9
Q ss_pred cHHHHHHHhCCceEEEcchh
Q 039753 97 QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~~ 116 (125)
++.++|+++|.+.+++++..
T Consensus 88 ~~i~~A~~lGa~~vv~h~g~ 107 (273)
T smart00518 88 DEIKRCEELGIKALVFHPGS 107 (273)
T ss_pred HHHHHHHHcCCCEEEEcccc
Confidence 47789999999999998753
No 162
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=33.81 E-value=1.4e+02 Score=23.33 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccH-----------HHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQG-----------IKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~-----------~~vA~~lgIP~~~f~ 113 (125)
..+.+.++++. .+.+.+|.|...++. .++|+.++.|.+.-.
T Consensus 110 ~~i~~~~~~l~-----~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVILV~ 161 (475)
T TIGR00313 110 KAIKESLEILA-----REYDYVVIEGAGSPAEINLLKRDLANMRIAELANADAILVA 161 (475)
T ss_pred HHHHHHHHHHH-----hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCCEEEEE
Confidence 34455555543 356889999877543 589999999987654
No 163
>PRK12474 hypothetical protein; Provisional
Probab=33.77 E-value=1.2e+02 Score=23.82 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcc------cHHHHHHHhCCceEE
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVE------QGIKVAEKLNIQSAA 111 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~------w~~~vA~~lgIP~~~ 111 (125)
..++++++.|.+. .+|..++ +.-.. ...++|+++|+|.+.
T Consensus 189 ~~i~~~~~~L~~A---~rPvil~-G~g~~~~~a~~~l~~lae~~g~PV~~ 234 (518)
T PRK12474 189 ETVERIAALLRNG---KKSALLL-RGSALRGAPLEAAGRIQAKTGVRLYC 234 (518)
T ss_pred HHHHHHHHHHHcC---CCcEEEE-CCccchhhHHHHHHHHHHHHCCCEEE
Confidence 3466666666543 3564444 43332 346899999999885
No 164
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=33.66 E-value=82 Score=21.29 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=24.6
Q ss_pred CeeEEEecCCc--ccHHHHHHHhCCceEEEcchh
Q 039753 85 NITYVIADGNV--EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~~iI~D~~~--~w~~~vA~~lgIP~~~f~t~~ 116 (125)
+|++||..... .....--.+.|||.+.+-...
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 68999988777 567777788899999998765
No 165
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=33.33 E-value=1.8e+02 Score=21.21 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=22.2
Q ss_pred EecCCcccHHHHHHHhCCceEEEcchhHHHHHh
Q 039753 90 IADGNVEQGIKVAEKLNIQSAAFWPAAAAVLAL 122 (125)
Q Consensus 90 I~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~ 122 (125)
|+|.+. +....+++.||+..+.=..+|+..++
T Consensus 98 I~dpg~-~Lv~~~~~~gi~v~vIPGiSA~~aA~ 129 (287)
T PRK14994 98 INDPGY-HLVRTCREAGIRVVPLPGPCAAITAL 129 (287)
T ss_pred eeCCHH-HHHHHHHHCCCCEEEeCCHHHHHHHH
Confidence 444433 34556778899999988888776665
No 166
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=33.32 E-value=1.3e+02 Score=20.09 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=19.3
Q ss_pred CCeeEEEecCCc-----ccHHHHHHHhCCceEEEc
Q 039753 84 ENITYVIADGNV-----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 84 ~~~~~iI~D~~~-----~w~~~vA~~lgIP~~~f~ 113 (125)
.+|..++--... .-..++|+++|||.+.-.
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 356555544332 235678899999988654
No 167
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=33.17 E-value=56 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=26.7
Q ss_pred CeeEEEecCCc--ccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNV--EQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~--~w~~~vA~~lgIP~~~f~t~ 115 (125)
-++.+|+|.-| +-..++|+++|.+.+.+.+-
T Consensus 265 ~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r 297 (731)
T cd01916 265 IADVVVVDEQCIRADILEEAQKLGIPVIATNDK 297 (731)
T ss_pred CCcEEEEecccCcccHHHHHHHhCCCEEEechh
Confidence 68999999976 56899999999999988653
No 168
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=33.15 E-value=44 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=9.7
Q ss_pred HHHHHHHhCCceEE
Q 039753 98 GIKVAEKLNIQSAA 111 (125)
Q Consensus 98 ~~~vA~~lgIP~~~ 111 (125)
+..+|+++|+|.+.
T Consensus 7 A~~~A~~~~lp~~~ 20 (56)
T PF13263_consen 7 AAELAEKYGLPFTG 20 (56)
T ss_dssp HHHHHHHTT--EEE
T ss_pred HHHHHHHcCCCeEe
Confidence 67889999999764
No 169
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=33.12 E-value=15 Score=22.68 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=14.6
Q ss_pred ecCCcccHHHHHHHhCCce
Q 039753 91 ADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 91 ~D~~~~w~~~vA~~lgIP~ 109 (125)
.|.+.++....|+++|||.
T Consensus 93 id~i~G~vv~~a~~~gv~~ 111 (125)
T PF08546_consen 93 IDYINGYVVRLAKKHGVPT 111 (125)
T ss_dssp HHHTHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 4788999999999999984
No 170
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=33.06 E-value=22 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.9
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhh
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILE 28 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~ 28 (125)
+.|..+|++|+|++++.....++....
T Consensus 127 ~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 127 NELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 456667999999999988877776543
No 171
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=32.96 E-value=88 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=18.0
Q ss_pred CeeEEEe-cCCcccH--HHHHHHhCCceEEEc
Q 039753 85 NITYVIA-DGNVEQG--IKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~-D~~~~w~--~~vA~~lgIP~~~f~ 113 (125)
+|++|+. +.-..|. ...|++.|||.+.+.
T Consensus 85 kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~ 116 (380)
T PRK00025 85 PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYV 116 (380)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEe
Confidence 5777654 4322344 445788999988763
No 172
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.87 E-value=72 Score=21.98 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=22.4
Q ss_pred eEEEecCCc-ccHHHHHHHhCCceEEEcc
Q 039753 87 TYVIADGNV-EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 87 ~~iI~D~~~-~w~~~vA~~lgIP~~~f~t 114 (125)
..||.|..- .-+..=|.++|||.+.+.=
T Consensus 111 lliv~dp~~~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 111 VVVVTDPRADHQALKEASEVGIPIVALCD 139 (196)
T ss_pred EEEEECCccccHHHHHHHHcCCCEEEEee
Confidence 367788866 4688899999999998753
No 173
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=32.87 E-value=1.3e+02 Score=22.84 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=22.3
Q ss_pred CeeEEEecCC--cc----------------cHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGN--VE----------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~--~~----------------w~~~vA~~lgIP~~~f~ 113 (125)
.++.||.|.+ +. ....+|++++||.++..
T Consensus 305 ~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~ls 351 (421)
T TIGR03600 305 GLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLLA 351 (421)
T ss_pred CCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEec
Confidence 5789999986 22 35568999999998865
No 174
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=32.82 E-value=88 Score=24.01 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=23.5
Q ss_pred CeeEEEe---cCCcccHHHHHHHhCCceEEE-cchhH
Q 039753 85 NITYVIA---DGNVEQGIKVAEKLNIQSAAF-WPAAA 117 (125)
Q Consensus 85 ~~~~iI~---D~~~~w~~~vA~~lgIP~~~f-~t~~a 117 (125)
..+.++. +.....+..+-+++|||.+.+ .+.+.
T Consensus 222 ~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~~P~G~ 258 (429)
T cd03466 222 KATIELGMFVDHGLSAGSYLEEEFGIPNYRLPLPIGL 258 (429)
T ss_pred cEEEEEccCccchHHHHHHHHHHHCCCeeecCCCcCh
Confidence 4667776 455667888999999998765 43443
No 175
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=32.45 E-value=90 Score=24.81 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=19.5
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
.+|+.+|.. ++...+|+++|||.+.
T Consensus 436 ~~~DlliG~---s~~k~~a~~~giPlir 460 (515)
T TIGR01286 436 EPVDFLIGN---SYGKYIQRDTLVPLIR 460 (515)
T ss_pred cCCCEEEEC---chHHHHHHHcCCCEEE
Confidence 367788766 4678999999999763
No 176
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=32.32 E-value=1e+02 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=19.3
Q ss_pred CeeEEEecCCccc--HHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~lgIP~~~f~ 113 (125)
+|+.||......- ..+--++.|||.+.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 6888877543322 4445578999998875
No 177
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=32.20 E-value=1.1e+02 Score=17.77 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcchh
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWPAA 116 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~~ 116 (125)
+.+.++++.+++. ..+...-.| +.--.++++++|| |.+.++..+
T Consensus 36 ~~p~~~~~a~~~~-----~~~~~~~vd--~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 36 LAPTWREFAKEMD-----GVIRIGAVN--CGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred hHHHHHHHHHHhc-----CceEEEEEe--CCccHHHHHHcCCCccCEEEEEcCC
Confidence 3344555555542 234444444 3345789999987 878777644
No 178
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=32.10 E-value=29 Score=18.14 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=8.7
Q ss_pred HHHHHHhCCce
Q 039753 99 IKVAEKLNIQS 109 (125)
Q Consensus 99 ~~vA~~lgIP~ 109 (125)
.++|+++|+|.
T Consensus 7 ~elAk~l~v~~ 17 (54)
T PF04760_consen 7 SELAKELGVPS 17 (54)
T ss_dssp THHHHHHSSSH
T ss_pred HHHHHHHCcCH
Confidence 47899998874
No 179
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=31.86 E-value=90 Score=23.27 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=27.2
Q ss_pred CeeEEEec-CCcccHHHHHHHhCCceEEEcchhHHH
Q 039753 85 NITYVIAD-GNVEQGIKVAEKLNIQSAAFWPAAAAV 119 (125)
Q Consensus 85 ~~~~iI~D-~~~~w~~~vA~~lgIP~~~f~t~~a~~ 119 (125)
...++++. ....++..+.+++|+|.+.+.+.+...
T Consensus 202 ~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~ 237 (399)
T cd00316 202 KLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEA 237 (399)
T ss_pred cEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHH
Confidence 56777776 566789999999999999887766543
No 180
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=31.64 E-value=1.5e+02 Score=19.47 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=17.5
Q ss_pred ccHHHHHHHhCCceEEEcchh
Q 039753 96 EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 96 ~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+..++|++.|+|.+=++...
T Consensus 136 ~~~~~~a~~~~~~~vD~~~~~ 156 (198)
T cd01821 136 AAMRELAAEEGVPLIDLNAAS 156 (198)
T ss_pred HHHHHHHHHhCCCEEecHHHH
Confidence 478899999999999887653
No 181
>PRK07077 hypothetical protein; Provisional
Probab=31.63 E-value=57 Score=23.14 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=27.4
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+.++..||=..-...+|.+.|||.+++...|
T Consensus 135 ~~gA~aVDMEsaAvA~va~~~giPf~viR~IS 166 (238)
T PRK07077 135 ATGALAVDMESHIAAAFAAARGLPFAACRVIV 166 (238)
T ss_pred hCCCEEEehhHHHHHHHHHHcCCCEEEEEEEE
Confidence 35799999988888999999999999987654
No 182
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=31.56 E-value=33 Score=23.34 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=23.1
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD 44 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 44 (125)
.+|+++|++||+.+.......-. ....+++.+.+|.
T Consensus 28 ~~l~~~g~~v~Vyc~~~~~~~~~-------~~y~gv~l~~i~~ 63 (185)
T PF09314_consen 28 PRLVSKGIDVTVYCRSDYYPYKE-------FEYNGVRLVYIPA 63 (185)
T ss_pred HHHhcCCceEEEEEccCCCCCCC-------cccCCeEEEEeCC
Confidence 46778899999998654432111 1124788888873
No 183
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=31.47 E-value=22 Score=20.01 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=11.4
Q ss_pred EecCCcccHHHHHHHhCCc
Q 039753 90 IADGNVEQGIKVAEKLNIQ 108 (125)
Q Consensus 90 I~D~~~~w~~~vA~~lgIP 108 (125)
||-.|...+...|+++||+
T Consensus 17 vySsFl~ha~raa~~ygVd 35 (66)
T PF07836_consen 17 VYSSFLLHAERAAERYGVD 35 (66)
T ss_dssp --TTHHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHHHHhCcC
Confidence 3445666788888888886
No 184
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=31.23 E-value=1.2e+02 Score=18.00 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcchhH
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPAAA 117 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~~a 117 (125)
.++++|.|..++ -+.++++++ .+| +++.+...
T Consensus 51 ~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p-vv~~t~~~ 89 (130)
T COG0784 51 QPDLILLDINMPGMDGIELLRRLRARGPNIP-VILLTAYA 89 (130)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC-EEEEEcCc
Confidence 489999999988 355565555 478 46655543
No 185
>PLN02854 3-ketoacyl-CoA synthase
Probab=31.22 E-value=2.4e+02 Score=22.63 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=19.2
Q ss_pred CeeEEEe----cC-CcccHHHHHHHhCCc-eE-EEcch
Q 039753 85 NITYVIA----DG-NVEQGIKVAEKLNIQ-SA-AFWPA 115 (125)
Q Consensus 85 ~~~~iI~----D~-~~~w~~~vA~~lgIP-~~-~f~t~ 115 (125)
.+++||+ |. +-+-+..|++++|++ -+ .|.-+
T Consensus 209 dID~LIv~cS~~~p~PSlAa~I~n~LGlr~~i~afdLs 246 (521)
T PLN02854 209 DIGILIVNCSLFNPTPSLSAMIVNHYKLRTDIKSYNLG 246 (521)
T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHhCCCCCceEEecc
Confidence 4677776 21 223477799999996 33 44444
No 186
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=31.06 E-value=1.4e+02 Score=20.16 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=23.7
Q ss_pred CeeEEEecCCcc--cHHHHHHHhC---CceEEEcchhH
Q 039753 85 NITYVIADGNVE--QGIKVAEKLN---IQSAAFWPAAA 117 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~lg---IP~~~f~t~~a 117 (125)
+++.++.|.-++ -+.++++++. .|.++|.|+..
T Consensus 47 ~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~vt~~~ 84 (238)
T PRK11697 47 KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVFVTAFD 84 (238)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEEEeccH
Confidence 678999998775 3667887764 46777776553
No 187
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=31.05 E-value=35 Score=18.81 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=8.6
Q ss_pred HHHHHHHhCCc
Q 039753 98 GIKVAEKLNIQ 108 (125)
Q Consensus 98 ~~~vA~~lgIP 108 (125)
..++|++|||+
T Consensus 25 lkdIA~~Lgvs 35 (60)
T PF10668_consen 25 LKDIAEKLGVS 35 (60)
T ss_pred HHHHHHHHCCC
Confidence 56788888886
No 188
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=31.02 E-value=1.5e+02 Score=20.25 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=20.1
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
.....+.|+=..-..++|+++|| |.+.++
T Consensus 53 ~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f 84 (215)
T TIGR02187 53 KLKLEIYDFDTPEDKEEAEKYGVERVPTTIIL 84 (215)
T ss_pred CceEEEEecCCcccHHHHHHcCCCccCEEEEE
Confidence 34556677665557789999875 777665
No 189
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=30.81 E-value=45 Score=25.08 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=17.6
Q ss_pred cHHHHHHHhCCceEEEcchhH
Q 039753 97 QGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~~a 117 (125)
-....|+|-|||.++.|+.-.
T Consensus 256 ~~L~~ake~~I~~vl~~P~V~ 276 (345)
T PF07611_consen 256 KFLKLAKENGIPVVLWWPKVS 276 (345)
T ss_pred HHHHHHHHcCCcEEEEEeccC
Confidence 467799999999999998643
No 190
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.59 E-value=1.7e+02 Score=19.75 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCeeE-EEecCCc-ccHHHHHHHhCCceEEEcchh
Q 039753 84 ENITY-VIADGNV-EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 84 ~~~~~-iI~D~~~-~w~~~vA~~lgIP~~~f~t~~ 116 (125)
..|++ ||.|.-- ..+..=|.++|||.+.+.=+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 35664 6667654 478888999999999987554
No 191
>PRK05849 hypothetical protein; Provisional
Probab=30.52 E-value=65 Score=27.07 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=21.7
Q ss_pred CeeEEEecCCc--ccHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNV--EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~--~w~~~vA~~lgIP~~~ 111 (125)
++..||.+.-. +-+.-+|+++|||.++
T Consensus 727 ~i~g~Vte~Gg~~SH~AI~ARe~gIPavv 755 (783)
T PRK05849 727 GIAGLITCYGGANSHMAIRAAELGLPAVI 755 (783)
T ss_pred heeEEEEcCCCcccHHHHHHHHcCCCEEE
Confidence 35788888754 5788899999999975
No 192
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=30.50 E-value=27 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=17.4
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecC-----CcccHHH
Q 039753 70 REELIKDSNARETHENITYVIADG-----NVEQGIK 100 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~-----~~~w~~~ 100 (125)
++++++.+.+... .++.++|+|. |..|+.+
T Consensus 47 ~~e~~~~L~~~~~-~~crY~vyd~~~klvFI~w~Pd 81 (122)
T PTZ00152 47 LTELVGSIDKNDK-IQCAYVVFDAVNKIHFFMYARE 81 (122)
T ss_pred HHHHHHhccccCC-CCceEEEEccCCCEEEEEECCC
Confidence 5666666654210 1367899997 4455544
No 193
>PLN02377 3-ketoacyl-CoA synthase
Probab=29.76 E-value=2.6e+02 Score=22.33 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=27.8
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEe----c-CCcccHHHHHHHhCCc--eEEEcch
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIA----D-GNVEQGIKVAEKLNIQ--SAAFWPA 115 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~----D-~~~~w~~~vA~~lgIP--~~~f~t~ 115 (125)
+.+...+++++++..-.. ..+++||. | ..-+-+..|++++|++ ...|..+
T Consensus 174 ~l~~~A~~~aL~kaGi~p--~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~ 230 (502)
T PLN02377 174 QVMFGALDNLFANTNVNP--KDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLG 230 (502)
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecc
Confidence 334445555555542111 24678777 2 1224578899999996 2345444
No 194
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=29.68 E-value=74 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=21.2
Q ss_pred CeeEEEecCCcc-cHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVE-QGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~-w~~~vA~~lgIP~~~ 111 (125)
....+++..... |+..+.+++|||.+.
T Consensus 194 ~lniv~~~~~~~~~a~~L~e~~giP~~~ 221 (398)
T PF00148_consen 194 ALNIVLCPEGGPYAAEWLEERFGIPYLY 221 (398)
T ss_dssp SEEEESSCCHHHHHHHHHHHHHT-EEEE
T ss_pred cEEEEeccchhhHHHHHHHHHhCCCeee
Confidence 466666766665 999999999999998
No 195
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=29.66 E-value=87 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.1
Q ss_pred eEEEecCCcc-cHHHHHHHhCCceEEEcch
Q 039753 87 TYVIADGNVE-QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 87 ~~iI~D~~~~-w~~~vA~~lgIP~~~f~t~ 115 (125)
..||.|.--. -+..=|.++|||.+.|.=+
T Consensus 121 llIV~Dp~~d~qAI~EA~~lnIPvIal~DT 150 (249)
T PTZ00254 121 LLIVTDPRTDHQAIREASYVNIPVIALCDT 150 (249)
T ss_pred EEEEeCCCcchHHHHHHHHhCCCEEEEecC
Confidence 3678888663 6888999999999998633
No 196
>PRK04123 ribulokinase; Provisional
Probab=29.51 E-value=2.7e+02 Score=22.05 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc-----ccHHHHHHHhCCceEEEcch
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV-----EQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~-----~w~~~vA~~lgIP~~~f~t~ 115 (125)
...++.++.+...-.++..++.+...+ .+++-|+...-. .|.+-.|+-+|.|....-..
T Consensus 410 ~~~l~RAvlEgia~~~~~~~e~l~~~g--~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~ 473 (548)
T PRK04123 410 APDIYRALIEATAFGTRAIMECFEDQG--VPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASD 473 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCcc
Confidence 344555555555556677777765433 356666666654 59999999999999776543
No 197
>PRK12513 RNA polymerase sigma factor; Provisional
Probab=29.38 E-value=84 Score=20.80 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCce
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~ 109 (125)
...+..++.++.... +-....+.+-..-..++|+++||+.
T Consensus 130 ~~~l~~~l~~L~~~~---r~i~~l~~~~g~s~~EIA~~lgis~ 169 (194)
T PRK12513 130 RRRLQAALETLPDEQ---REVFLLREHGDLELEEIAELTGVPE 169 (194)
T ss_pred HHHHHHHHHhCCHhH---hhheeeehccCCCHHHHHHHHCCCH
Confidence 345777777774321 2222333333446899999999985
No 198
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=29.37 E-value=43 Score=17.86 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=10.6
Q ss_pred cHHHHHHHhCCce
Q 039753 97 QGIKVAEKLNIQS 109 (125)
Q Consensus 97 w~~~vA~~lgIP~ 109 (125)
-..++|+++||..
T Consensus 25 tl~elA~~lgis~ 37 (53)
T PF04967_consen 25 TLEELAEELGISK 37 (53)
T ss_pred CHHHHHHHhCCCH
Confidence 3789999999964
No 199
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.35 E-value=1.1e+02 Score=22.17 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEEE
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~f 112 (125)
+.+...++++|++..-+. ..+++++.--...| ...+++++|+|.-.+
T Consensus 230 ~~~~~~i~~~L~~~gl~~--~did~~~~H~~~~~~~~~i~~~l~l~~e~~ 277 (329)
T PRK07204 230 KYLMKFIDKLLMDAGYTL--ADIDLIVPHQASGPAMRLIRKKLGVDEERF 277 (329)
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEeCCCCHHHHHHHHHHcCCCHHHh
Confidence 344556666666643221 35889888777765 456999999986443
No 200
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=29.30 E-value=1.2e+02 Score=18.18 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
+.++++.+++.. .++...-.|.- -..++++++|| |.+.++.
T Consensus 44 p~~~~l~~~~~~----~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 44 PVWKEVIQELEP----LGVGIATVNAG--HERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred HHHHHHHHHHHh----cCceEEEEecc--ccHHHHHHcCCccCCEEEEEE
Confidence 345555555532 13444444432 23578889876 6666554
No 201
>PRK05634 nucleosidase; Provisional
Probab=29.10 E-value=44 Score=22.53 Aligned_cols=29 Identities=10% Similarity=-0.037 Sum_probs=24.4
Q ss_pred EEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 88 YVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 88 ~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
+.+.||=..-...+|+++|||.+++...|
T Consensus 127 a~~vDME~aAva~va~~~~vPf~~iR~IS 155 (185)
T PRK05634 127 ADLVDMEGYAVAAVAAEFGVPCRLVKHVS 155 (185)
T ss_pred CeEEecHHHHHHHHHHHhCCCEEEEEEec
Confidence 46789987888999999999999887654
No 202
>PRK02561 psbF cytochrome b559 subunit beta; Provisional
Probab=29.07 E-value=42 Score=17.10 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=14.2
Q ss_pred HHHhCCceEEEcchhHHHH
Q 039753 102 AEKLNIQSAAFWPAAAAVL 120 (125)
Q Consensus 102 A~~lgIP~~~f~t~~a~~~ 120 (125)
-+-++||.+.|..+-+++-
T Consensus 22 vhalavPtVfFlGaI~AMQ 40 (44)
T PRK02561 22 VHALGVPTVFFLGAIAAMQ 40 (44)
T ss_pred hhccccCceeeccHHHHHH
Confidence 3568999999987766653
No 203
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.01 E-value=1.4e+02 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=19.2
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.+|.. +|...+|+++|||.+..
T Consensus 377 ~pDliiG~---s~~~~~a~~~gip~v~~ 401 (435)
T cd01974 377 PVDLLIGN---TYGKYIARDTDIPLVRF 401 (435)
T ss_pred CCCEEEEC---ccHHHHHHHhCCCEEEe
Confidence 57777665 46789999999998643
No 204
>PLN02891 IMP cyclohydrolase
Probab=28.91 E-value=66 Score=25.78 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=22.6
Q ss_pred CeeEEEecCCccc----HHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVEQ----GIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~w----~~~vA~~lgIP~~~ 111 (125)
+=+++-+|.|+++ +.+.|.+.||-.++
T Consensus 485 ~G~vlASDAFFPF~~~D~ve~aa~~Gv~aII 515 (547)
T PLN02891 485 KGAALASDAFFPFAWNDAVEEACQAGVKVIA 515 (547)
T ss_pred CCeEEEecccCCCCCCccHHHHHHhCCEEEE
Confidence 3468999999987 58999999998775
No 205
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=28.80 E-value=87 Score=21.73 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.0
Q ss_pred ee-EEEecCCcc-cHHHHHHHhCCceEEEcc
Q 039753 86 IT-YVIADGNVE-QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 86 ~~-~iI~D~~~~-w~~~vA~~lgIP~~~f~t 114 (125)
|+ .||.|.--. -+..=|.++|||.+.+.=
T Consensus 115 Pdliiv~dp~~~~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 115 PDVVVVTDPRGDAQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred CCEEEEECCcccHHHHHHHHHhCCCEEEEEe
Confidence 44 577888664 688899999999999863
No 206
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=28.78 E-value=41 Score=23.39 Aligned_cols=31 Identities=13% Similarity=-0.110 Sum_probs=26.3
Q ss_pred eeEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 86 ITYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 86 ~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
+.+.+.||=..-...+|.++|+|.++..+.|
T Consensus 154 ~~a~~vDME~aAiaqv~~~~~vpf~~ir~IS 184 (218)
T PRK07164 154 IFVSFFDMEAFALAQVCFKNKVKFYCIKYVS 184 (218)
T ss_pred CCCcEEEchHHHHHHHHHHcCCCEEEEEEEc
Confidence 4678889988888899999999999887654
No 207
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.72 E-value=1.7e+02 Score=21.12 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=24.3
Q ss_pred ee-EEEecCCcc-cHHHHHHHhCCceEEEcchh
Q 039753 86 IT-YVIADGNVE-QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 86 ~~-~iI~D~~~~-w~~~vA~~lgIP~~~f~t~~ 116 (125)
|+ .+|.|.--- -+..=|+++|||.+++.=+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 54 578888764 68888999999999986544
No 208
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=28.63 E-value=1.6e+02 Score=20.14 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=13.4
Q ss_pred CeeEEE---ecCCcc--cHHHHHHHh-----CCceEEEc
Q 039753 85 NITYVI---ADGNVE--QGIKVAEKL-----NIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI---~D~~~~--w~~~vA~~l-----gIP~~~f~ 113 (125)
+|+|+| .|..++ -+.++.+++ ++|.+++.
T Consensus 37 ~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt 75 (207)
T PRK11475 37 SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIA 75 (207)
T ss_pred CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEe
Confidence 456666 343332 233444443 45555553
No 209
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=28.53 E-value=84 Score=21.77 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCC-------cccHHHHHHHhCCceEE
Q 039753 68 RKREELIKDSNARETHENITYVIADGN-------VEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~-------~~w~~~vA~~lgIP~~~ 111 (125)
+.+-++++++. .+++.|+.|.. ++.+.-++-.+++|++-
T Consensus 77 P~~l~~l~~l~-----~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIG 122 (206)
T PF04493_consen 77 PCILEALEKLK-----NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIG 122 (206)
T ss_dssp HHHHHHHHTSS-----S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEE
T ss_pred HHHHHHHHHhc-----ccCCEEEEeCceeecCCCcChhheeeeccCCCEEE
Confidence 45666667765 35779999985 45667777888888763
No 210
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.14 E-value=25 Score=19.41 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=12.0
Q ss_pred CcccccCCCEEEEEeC
Q 039753 1 SQWLVKHGFTITLSNT 16 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t 16 (125)
|..|.++|++||++=.
T Consensus 12 A~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 12 AYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHTTSEEEEEES
T ss_pred HHHHHHCCCcEEEEec
Confidence 3567778999999853
No 211
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=27.92 E-value=1.8e+02 Score=18.99 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---------ceEEEcc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---------QSAAFWP 114 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---------P~~~f~t 114 (125)
.+.++++.++... .++..+-.|. .--.++|+++|| |.+.++-
T Consensus 66 ~p~l~~la~~~~~----~~v~f~~VDv--d~~~~la~~~~V~~~~~v~~~PT~ilf~ 116 (152)
T cd02962 66 APVFAELSLKYNN----NNLKFGKIDI--GRFPNVAEKFRVSTSPLSKQLPTIILFQ 116 (152)
T ss_pred HHHHHHHHHHccc----CCeEEEEEEC--CCCHHHHHHcCceecCCcCCCCEEEEEE
Confidence 3445555554421 2455666663 334689999996 7777764
No 212
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=27.89 E-value=82 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=23.7
Q ss_pred eEEEecCCccc--HHHHHHHhCCceEEEcch
Q 039753 87 TYVIADGNVEQ--GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 87 ~~iI~D~~~~w--~~~vA~~lgIP~~~f~t~ 115 (125)
+++++|.|+++ +.+.|.+.||..++-=..
T Consensus 455 av~aSDafFPf~Dtie~aa~~Gv~aIiqPgG 485 (513)
T PRK00881 455 AVLASDAFFPFRDGVEAAAKAGITAIIQPGG 485 (513)
T ss_pred eEEEeeCCCCchhHHHHHHHcCCeEEEeCCC
Confidence 58889999976 888999999988875433
No 213
>PRK10281 hypothetical protein; Provisional
Probab=27.85 E-value=80 Score=23.04 Aligned_cols=30 Identities=27% Similarity=0.201 Sum_probs=22.9
Q ss_pred CeeEEEecC--Cc-ccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADG--NV-EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~--~~-~w~~~vA~~lgIP~~~f~t 114 (125)
.|.+||.|. +- .+++.+|+|+|.+--+|-.
T Consensus 19 NpaaVv~~a~~L~~~~Mq~IAre~n~SETaFv~ 51 (299)
T PRK10281 19 NSAGVVLNADGLSEAQMQLIARELNHSETAFLL 51 (299)
T ss_pred CceEEEcCCCCCCHHHHHHHHHHhCCceEEEEc
Confidence 567777664 32 4799999999999888863
No 214
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=27.84 E-value=1.5e+02 Score=17.98 Aligned_cols=32 Identities=9% Similarity=0.308 Sum_probs=18.9
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---ceEEEcchh
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---QSAAFWPAA 116 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~~ 116 (125)
.+.+...|.-..-..++++++|| |.+.|+..+
T Consensus 54 ~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~ 88 (114)
T cd02992 54 VVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPF 88 (114)
T ss_pred ceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCC
Confidence 35555555433335678888875 777776543
No 215
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=27.83 E-value=1.6e+02 Score=18.41 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=25.0
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
+.+.++++-++.. ..+.....|. .-..++|++++| |+.+|+
T Consensus 32 mdp~l~ela~~~~-----~~~~f~kVDV--Dev~dva~~y~I~amPtfvff 75 (114)
T cd02986 32 LDDILSKTSHDLS-----KMASIYLVDV--DKVPVYTQYFDISYIPSTIFF 75 (114)
T ss_pred HHHHHHHHHHHcc-----CceEEEEEec--cccHHHHHhcCceeCcEEEEE
Confidence 3445555555542 1244555554 468899999985 777765
No 216
>PRK08304 stage V sporulation protein AD; Validated
Probab=27.81 E-value=1.8e+02 Score=21.92 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEe-cCC--cccHHHHHHHhCCceEEEcchhHH
Q 039753 68 RKREELIKDSNARETHENITYVIA-DGN--VEQGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~-D~~--~~w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
...++.|++-.-+. ..++++|+ |.. ...+.-+|+++|||.+-....++.
T Consensus 62 eAa~~ALekAGI~~--~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~gACST 113 (337)
T PRK08304 62 DAIQQALQKANLKK--SDIDYLLAGDLLNQIISANFAARELGIPFLGLYGACST 113 (337)
T ss_pred HHHHHHHHHcCCCH--HHCCEEEEECCCCCcchHHHHHHHhCCcEEEEeccCHH
Confidence 34555554432111 24676654 543 245677999999997666654444
No 217
>PRK08296 hypothetical protein; Provisional
Probab=27.78 E-value=72 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=21.3
Q ss_pred CeeEEEecC--CcccHHHHHHHhCCceEE
Q 039753 85 NITYVIADG--NVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~--~~~w~~~vA~~lgIP~~~ 111 (125)
....||++. ..+-+.-+|+++|||.++
T Consensus 547 ~~~GiVte~Gg~~SHaAIvARe~GIPaVv 575 (603)
T PRK08296 547 KIKATVTDIGGVMSHAAIVCREYGLPAVV 575 (603)
T ss_pred HheEEEEecCCCcchHHHHHHHcCCCEEE
Confidence 456778776 446788899999999875
No 218
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.43 E-value=96 Score=23.78 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=21.6
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
.+|+.+|.... ...+|+|+|||...+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 37899987765 6678999999997654
No 219
>PRK06321 replicative DNA helicase; Provisional
Probab=27.37 E-value=1.5e+02 Score=23.31 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=26.0
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc----------------------HHHHHHHhCCceEEEc
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ----------------------GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w----------------------~~~vA~~lgIP~~~f~ 113 (125)
++.-++++..+ ..+++||.|.+.-- ...+|+++|||.++..
T Consensus 324 i~~~~r~~~~~---~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vpVi~ls 386 (472)
T PRK06321 324 LRARARRMKES---YDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIPILCLS 386 (472)
T ss_pred HHHHHHHHHHh---cCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 44444444332 35789999984311 3457889999999865
No 220
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=27.27 E-value=2.9e+02 Score=23.09 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=23.9
Q ss_pred CCeeEEEecCCcc-cHHHHHHHhCCceEEEc
Q 039753 84 ENITYVIADGNVE-QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 84 ~~~~~iI~D~~~~-w~~~vA~~lgIP~~~f~ 113 (125)
-+|++|++|.--. -+...|+++++|.+.--
T Consensus 414 ~~p~~i~~D~HP~y~st~~a~~~~~~~~~vQ 444 (711)
T TIGR00143 414 FEPQDIVCDLHPQYNTTQYAEELSLPVLRVQ 444 (711)
T ss_pred CCCCEEEEeCCCCchhHHHHHHcCCCeeeee
Confidence 4689999999775 47778999999976543
No 221
>CHL00039 psbF photosystem II protein VI
Probab=27.09 E-value=51 Score=16.23 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=13.6
Q ss_pred HHhCCceEEEcchhHHHH
Q 039753 103 EKLNIQSAAFWPAAAAVL 120 (125)
Q Consensus 103 ~~lgIP~~~f~t~~a~~~ 120 (125)
..++||.+.|..+-+++-
T Consensus 18 h~lavPtvfflGai~amQ 35 (39)
T CHL00039 18 HGLAVPTVFFLGSISAMQ 35 (39)
T ss_pred hcccCCceeeccHHHHHH
Confidence 568999999887766553
No 222
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=27.07 E-value=57 Score=23.02 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.1
Q ss_pred cHHHHHHHhCCceEEEc
Q 039753 97 QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~ 113 (125)
.+..+|+++|||.+.|=
T Consensus 15 ~~~~~a~~~~i~~~~~E 31 (269)
T PF05159_consen 15 AAIEVAKELGIPVIFFE 31 (269)
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 46788999999998873
No 223
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=27.05 E-value=33 Score=17.29 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=9.3
Q ss_pred HHHHHHHhCCceE
Q 039753 98 GIKVAEKLNIQSA 110 (125)
Q Consensus 98 ~~~vA~~lgIP~~ 110 (125)
..++|+++||+.+
T Consensus 10 L~~iAk~lgI~~~ 22 (43)
T PF07498_consen 10 LREIAKELGIEGY 22 (43)
T ss_dssp HHHHHHCTT-TTG
T ss_pred HHHHHHHcCCCCC
Confidence 5678999999854
No 224
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.80 E-value=2.1e+02 Score=20.32 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=16.2
Q ss_pred cCCCEEEEEeCccchHHHhhhh
Q 039753 6 KHGFTITLSNTEYNHRQVMNIL 27 (125)
Q Consensus 6 ~~G~~VT~v~t~~~~~~~~~~~ 27 (125)
..|.+||+++|+.......+.+
T Consensus 54 ~~g~~v~yvsTe~T~refi~qm 75 (235)
T COG2874 54 MNGYRVTYVSTELTVREFIKQM 75 (235)
T ss_pred hCCceEEEEEechhHHHHHHHH
Confidence 3589999999998776554443
No 225
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=26.78 E-value=1.4e+02 Score=17.37 Aligned_cols=31 Identities=6% Similarity=0.191 Sum_probs=17.7
Q ss_pred eeEEEecCCcccHHHHHHHhCC---ceEEEcchh
Q 039753 86 ITYVIADGNVEQGIKVAEKLNI---QSAAFWPAA 116 (125)
Q Consensus 86 ~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~~ 116 (125)
+..+-.|.--.-..++++++|| |.+.++..+
T Consensus 51 ~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~ 84 (109)
T cd03002 51 VQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPP 84 (109)
T ss_pred ceEEEEecCccccHHHHHHcCCCcCCEEEEEeCC
Confidence 3334444332224678888875 777776544
No 226
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=26.66 E-value=2.9e+02 Score=20.97 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=21.4
Q ss_pred CeeEEEecCCcccHHHHHHHh-CCceEEEc
Q 039753 85 NITYVIADGNVEQGIKVAEKL-NIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~l-gIP~~~f~ 113 (125)
.|+++|.|.-.+++..+++.+ +.|.+.+.
T Consensus 107 ~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~ 136 (419)
T cd03806 107 VPDIFIDTMGYPFTYPLVRLLGGCPVGAYV 136 (419)
T ss_pred CCCEEEEcCCcccHHHHHHHhcCCeEEEEe
Confidence 589899888778777888764 67765543
No 227
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=26.63 E-value=56 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=16.0
Q ss_pred EEecCCcccHHHHH--------HHhCCceEEEc
Q 039753 89 VIADGNVEQGIKVA--------EKLNIQSAAFW 113 (125)
Q Consensus 89 iI~D~~~~w~~~vA--------~~lgIP~~~f~ 113 (125)
=|.|+-+.-+.++| ++||||.+.|-
T Consensus 95 Pl~d~tteecveiske~gkrvgeelgiPVylYe 127 (302)
T COG3643 95 PLKDTTTEECVEISKELGKRVGEELGIPVYLYE 127 (302)
T ss_pred ecccccHHHHHHHHHHHHHHhhHhhCCcEEEeh
Confidence 35666665555444 56789998763
No 228
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=26.50 E-value=1.9e+02 Score=18.80 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=9.9
Q ss_pred CCeeEEEecCCcc
Q 039753 84 ENITYVIADGNVE 96 (125)
Q Consensus 84 ~~~~~iI~D~~~~ 96 (125)
.+|+.||+-..+.
T Consensus 88 ~~PD~IIsThp~~ 100 (169)
T PF06925_consen 88 FQPDLIISTHPFP 100 (169)
T ss_pred cCCCEEEECCcch
Confidence 3788999888763
No 229
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=26.50 E-value=49 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=17.1
Q ss_pred ccHHHHHHHhCCceEEEcchh
Q 039753 96 EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 96 ~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.-+..+|+++|||.|+--|.+
T Consensus 112 iiA~~ia~~~gvPayIVDPvv 132 (358)
T COG3426 112 IIANRIAKALGVPAYIVDPVV 132 (358)
T ss_pred HHHHHHhhhcCCCeeeeCcee
Confidence 457889999999999876654
No 230
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.44 E-value=1.1e+02 Score=23.22 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=20.0
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
+|+.+|.. ++...+|+++|||.+.
T Consensus 356 ~pDl~ig~---s~~~~~a~~~gip~~~ 379 (410)
T cd01968 356 KADLLVAG---GKERYLALKLGIPFCD 379 (410)
T ss_pred CCCEEEEC---CcchhhHHhcCCCEEE
Confidence 68888887 6678999999999873
No 231
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.42 E-value=1.3e+02 Score=23.27 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=20.8
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
+|+.+|.. ++...+|+++|||.+.+.
T Consensus 395 ~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 395 KADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred CCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 57888764 677889999999987653
No 232
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=26.42 E-value=89 Score=17.42 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=13.2
Q ss_pred EEEecCCcccHHHHHHHhCCc
Q 039753 88 YVIADGNVEQGIKVAEKLNIQ 108 (125)
Q Consensus 88 ~iI~D~~~~w~~~vA~~lgIP 108 (125)
.||.| +-..++|+++||.
T Consensus 37 ~iIid---pe~SeIAkrlgi~ 54 (64)
T COG2093 37 LIIID---PEKSEIAKRLGIK 54 (64)
T ss_pred EEEEc---CcHHHHHHHhCCC
Confidence 56666 4456899999985
No 233
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=26.40 E-value=1.2e+02 Score=23.42 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=23.0
Q ss_pred CeeEEEec-CCcccHHHHHHHhCCceEEEcchhH
Q 039753 85 NITYVIAD-GNVEQGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 85 ~~~~iI~D-~~~~w~~~vA~~lgIP~~~f~t~~a 117 (125)
..+.+++. ....++..+.+++|||.+.+.+.+.
T Consensus 240 ~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G~ 273 (443)
T TIGR01862 240 KLNLVHCARSANYIANELEERYGIPWMKIDFFGF 273 (443)
T ss_pred CEEEEEChHHHHHHHHHHHHHhCCCeEecccCCH
Confidence 45555554 3345788899999999998765543
No 234
>PRK08506 replicative DNA helicase; Provisional
Probab=26.12 E-value=1.9e+02 Score=22.60 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCc--c-----------------cHHHHHHHhCCceEEEc
Q 039753 70 REELIKDSNARETHENITYVIADGNV--E-----------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~--~-----------------w~~~vA~~lgIP~~~f~ 113 (125)
++..++++..+. ..+..||.|.+. . -...+|+++|||.++..
T Consensus 289 I~~~~r~l~~~~--~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~ls 349 (472)
T PRK08506 289 VRAQLRKLKSQH--PEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIALS 349 (472)
T ss_pred HHHHHHHHHHhC--CCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 444444443321 247899999862 1 13457999999999865
No 235
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=26.11 E-value=47 Score=17.97 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=11.1
Q ss_pred cc-HHHHHHHhCCce
Q 039753 96 EQ-GIKVAEKLNIQS 109 (125)
Q Consensus 96 ~w-~~~vA~~lgIP~ 109 (125)
+| ..++|+++|+|.
T Consensus 13 G~~~~eIA~~Lg~~~ 27 (58)
T PF06056_consen 13 GWSIKEIAEELGVPR 27 (58)
T ss_pred CCCHHHHHHHHCCCh
Confidence 44 678999999983
No 236
>PRK02551 flavoprotein NrdI; Provisional
Probab=26.05 E-value=30 Score=22.81 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=17.6
Q ss_pred ecCCcccHHHHHHHhCCceEE
Q 039753 91 ADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 91 ~D~~~~w~~~vA~~lgIP~~~ 111 (125)
-|.|+-.+..+|++++||.+.
T Consensus 108 g~~F~~aa~~ia~~~~vP~L~ 128 (154)
T PRK02551 108 NNQYCLTAKQYAKRFGFPMLA 128 (154)
T ss_pred HHHHHHHHHHHHHHcCCCEEE
Confidence 366888899999999999764
No 237
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.02 E-value=1.4e+02 Score=20.52 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=20.2
Q ss_pred CeeEEEecCCccc--H-HHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQ--G-IKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~-~~vA~~lgIP~~~f~t~ 115 (125)
+|+.||....... . ..+-+..|||.+.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 6888887654432 2 33444599999888654
No 238
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=26.00 E-value=3e+02 Score=20.96 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=27.6
Q ss_pred chHHHHHHHHHhhhcCCCCCeeE-EEecC--CcccHHHHHHHhCCce-EEEcchh
Q 039753 66 MPRKREELIKDSNARETHENITY-VIADG--NVEQGIKVAEKLNIQS-AAFWPAA 116 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~-iI~D~--~~~w~~~vA~~lgIP~-~~f~t~~ 116 (125)
....++++.+.+.. .+|++ |..|. |.-....-+++.|+|. ++++.++
T Consensus 67 ~~~~~~~~~~~~~~----~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~P 117 (373)
T PF02684_consen 67 LKRLFRKLVERIKE----EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISP 117 (373)
T ss_pred HHHHHHHHHHHHHH----cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECC
Confidence 34445555555544 35665 66786 5556777778899982 4444433
No 239
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=25.93 E-value=66 Score=20.29 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=19.4
Q ss_pred eeEEEe-cCCc--ccHHHHHHHhCCceEEEc
Q 039753 86 ITYVIA-DGNV--EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 86 ~~~iI~-D~~~--~w~~~vA~~lgIP~~~f~ 113 (125)
+++|-+ |.=. .-..++|+++|+|...|.
T Consensus 37 i~~lasi~~K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 37 VRVVATLDLKADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred hheeEehhhhcCCHHHHHHHHHhCCCeEEeC
Confidence 455544 3222 457899999999999883
No 240
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=25.75 E-value=1.5e+02 Score=20.12 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=32.6
Q ss_pred HchHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 65 VMPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 65 ~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
...+.++++++.+.+.+ -+-+||++..-.+...+.++++....
T Consensus 70 ~l~pg~~e~l~~l~~~g---~~~~IvS~~~~~~i~~il~~~~~~~~ 112 (214)
T TIGR03333 70 EIREGFREFVAFINEHG---IPFYVISGGMDFFVYPLLEGIVEKDR 112 (214)
T ss_pred cccccHHHHHHHHHHCC---CeEEEECCCcHHHHHHHHHhhCCccc
Confidence 45667888888887543 46789999988899999998865433
No 241
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=25.48 E-value=1.3e+02 Score=23.30 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=22.3
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE-cchhH
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF-WPAAA 117 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f-~t~~a 117 (125)
..+.++.+....-+..+.+++|||.+.+ .+.+.
T Consensus 236 ~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~G~ 269 (432)
T TIGR01285 236 CCTLAIGESMRRAASLLADRCGVPYIVFPSLMGL 269 (432)
T ss_pred cEEEEEChhHHHHHHHHHHHHCCCeEecCCCcCh
Confidence 4556666655445677888999999877 44443
No 242
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=25.39 E-value=1.1e+02 Score=18.86 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=25.2
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcchh
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWPAA 116 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~~ 116 (125)
+.++++... ....+.|.+ -.--..+++++|+ |+.+|+--+
T Consensus 50 LPEL~~af~-----~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 50 LPELVKAFP-----GRFRGAVVA--RAAERALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp HHHHHCTST-----TSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETT
T ss_pred cHHHHHhhh-----CccceEEEC--chhHHHHHHHhCCccCCeEEEEECC
Confidence 455555553 356666655 3456779999986 888887543
No 243
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.20 E-value=65 Score=22.80 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.8
Q ss_pred ccHHHHHHHhCCceEEEcchh
Q 039753 96 EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 96 ~w~~~vA~~lgIP~~~f~t~~ 116 (125)
-++.++|+++|.+.+++++..
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~ 108 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGS 108 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCC
Confidence 467899999999999998764
No 244
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=25.05 E-value=2.2e+02 Score=19.06 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCC-------cccHHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGN-------VEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~-------~~w~~~vA~~lgIP~~~f~ 113 (125)
+.+.+.++++....+ ..=-|||+-.. ..-+..+++++|||.+...
T Consensus 62 ~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 62 PEYAEWLNELKKQFG-KDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred HHHHHHHHHHHHHCC-CCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 344444555543321 11248888764 3457889999999987664
No 245
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=25.02 E-value=1.2e+02 Score=23.65 Aligned_cols=34 Identities=12% Similarity=0.002 Sum_probs=24.3
Q ss_pred CeeEEEecC-CcccHHHHHHHhCCceEEEc-chhHH
Q 039753 85 NITYVIADG-NVEQGIKVAEKLNIQSAAFW-PAAAA 118 (125)
Q Consensus 85 ~~~~iI~D~-~~~w~~~vA~~lgIP~~~f~-t~~a~ 118 (125)
..+.++++. ....+..+.+++|||.+.+- +.+..
T Consensus 228 ~~niv~~~~~~~~~A~~Le~~fGiPyi~~~~P~G~~ 263 (454)
T cd01973 228 IATIALARYEGGKAAEFLQKKFDVPAILGPTPIGIK 263 (454)
T ss_pred cEEEEEChhhhHHHHHHHHHHHCCCeeccCCCcChH
Confidence 456677664 55678889999999998763 55443
No 246
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=24.91 E-value=68 Score=23.04 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=14.8
Q ss_pred HHHHHHHhCCceEEEcchh
Q 039753 98 GIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~~ 116 (125)
..++|.++|+|.+.|.=++
T Consensus 90 ~~~lA~~~~lPvV~lvDtp 108 (256)
T PRK12319 90 LMKQAEKFGRPVVTFINTA 108 (256)
T ss_pred HHHHHHHcCCCEEEEEECC
Confidence 4678999999999885443
No 247
>PRK10481 hypothetical protein; Provisional
Probab=24.90 E-value=2.5e+02 Score=19.74 Aligned_cols=45 Identities=9% Similarity=-0.082 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--c-HHHHHHHhCCceEEEcchhH
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--Q-GIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w-~~~vA~~lgIP~~~f~t~~a 117 (125)
.+.+..+++.. ...++||-|+... + ...+.+++|+|.+.=.+.-|
T Consensus 170 ~l~~aa~~L~~----~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~a 217 (224)
T PRK10481 170 ELIDAGKELLD----QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVA 217 (224)
T ss_pred HHHHHHHHhhc----CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHH
Confidence 34455555543 3578999998653 2 45688899999987555444
No 248
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=24.79 E-value=1.5e+02 Score=22.04 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHchHHHHHHHHHhhhcCCCCCeeEEEecCCcccH-HHHHHHhCCce
Q 039753 63 MRVMPRKREELIKDSNARETHENITYVIADGNVEQG-IKVAEKLNIQS 109 (125)
Q Consensus 63 ~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~-~~vA~~lgIP~ 109 (125)
.+.....++++|++..-+. ..++++|.--...+. ..+++++|+|.
T Consensus 241 ~~~~~~~i~~~L~~~gl~~--~did~~v~HQ~~~~i~~~i~~~Lgl~~ 286 (353)
T PRK12880 241 LECEPKSFKEILEFSKVDE--KDIAFHLFHQSNAYLVDCIKEELKLND 286 (353)
T ss_pred HHHHHHHHHHHHHHcCCCH--HHCCEEEECCCCHHHHHHHHHHhCCCH
Confidence 3444556666666543211 358899888888774 55999999985
No 249
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=24.63 E-value=1.6e+02 Score=21.20 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=27.5
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCce
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQS 109 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~ 109 (125)
+.+...+++++++..-+. ..+++++.--...+ ...+++++|+|.
T Consensus 219 ~~~~~~~~~~l~~~g~~~--~di~~~~~h~~~~~~~~~~~~~lgi~~ 263 (318)
T TIGR00747 219 RKMGDVVEETLEANGLDP--EDIDWFVPHQANLRIIEALAKRLELDM 263 (318)
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEECCCCHHHHHHHHHHcCCCH
Confidence 334445566665543211 35788887777765 455999999984
No 250
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=24.58 E-value=2.2e+02 Score=18.99 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=21.1
Q ss_pred CeeEEEecCCcccH--HHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQG--IKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~--~~vA~~lgIP~~~f~t~ 115 (125)
++++||......-. .+.+++-|||.+.+...
T Consensus 55 ~~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 55 RVDGIILAPSRLDDELLEELAALGIPVVLVDRP 87 (264)
T ss_pred CcCEEEEecCCcchHHHHHHHHcCCCEEEeccc
Confidence 56777765554433 46678889999888654
No 251
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=24.58 E-value=68 Score=18.76 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=17.0
Q ss_pred eeEEEecCCcccHHHHHHHhCCceEE
Q 039753 86 ITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 86 ~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
+.|==.|..---..++|++.|||.+-
T Consensus 20 VvAKG~g~~A~~I~~~A~e~~VPi~~ 45 (82)
T TIGR00789 20 VVASGVGEVAERIIEIAKKHGIPIVE 45 (82)
T ss_pred EEEEeCCHHHHHHHHHHHHcCCCEEe
Confidence 33444454555577889999999764
No 252
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=24.46 E-value=99 Score=26.05 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=27.1
Q ss_pred CeeEEEecCCc--ccHHHHHHHhCCceEEEcchh
Q 039753 85 NITYVIADGNV--EQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~~iI~D~~~--~w~~~vA~~lgIP~~~f~t~~ 116 (125)
-++.+|+|.-| +-..++|+++|.+.+...+-.
T Consensus 302 avD~~VvD~QCi~p~L~eiA~~ygt~lItTs~k~ 335 (781)
T PRK00941 302 IPDVIVVDEQCVRTDILEEAKKLGIPVIATNDKI 335 (781)
T ss_pred CCcEEEEecccCcccHHHHHHHhCCCEEEecccc
Confidence 68999999977 569999999999999876643
No 253
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=24.42 E-value=2.1e+02 Score=18.63 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCC------------------cccHHHHHHHhCCceEEEcc
Q 039753 68 RKREELIKDSNARETHENITYVIADGN------------------VEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~------------------~~w~~~vA~~lgIP~~~f~t 114 (125)
..++++++.+.+. ..-||..|.- -.-...+|.+.|+|.+....
T Consensus 78 ~~~~~~~~~l~~g----~~v~i~pD~~~~~~~~~~~~F~G~~~~~~~G~~~lA~~~~~pivp~~~ 138 (192)
T cd07984 78 GGLRELIRALKKG----EIVGILPDQDPGRKGGVFVPFFGRPAATPTGPARLALKTGAPVVPAFA 138 (192)
T ss_pred chHHHHHHHHhCC----CEEEEEeCCCCCCCCCEEeccCCCCccchHHHHHHHHHHCCcEEEEEE
Confidence 4567777776542 2334444443 23456799999999886654
No 254
>PRK07773 replicative DNA helicase; Validated
Probab=24.38 E-value=1.8e+02 Score=24.85 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.1
Q ss_pred CeeEEEecCCcc-------------------cHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVE-------------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~-------------------w~~~vA~~lgIP~~~f~ 113 (125)
++++||.|.+.- ....+|+++|||.+++.
T Consensus 327 ~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~ls 374 (886)
T PRK07773 327 NLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALS 374 (886)
T ss_pred CCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEec
Confidence 578999998432 13458999999999875
No 255
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=24.36 E-value=1.5e+02 Score=22.78 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=20.2
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
.+|+.+|.. +-...+|+++|||.+.
T Consensus 354 ~~pDllig~---s~~~~~A~k~gIP~vr 378 (422)
T TIGR02015 354 FEPDLAIGT---TPLVQFAKEHGIPALY 378 (422)
T ss_pred CCCCEEEcC---CcchHHHHHcCCCEEE
Confidence 479999977 4467789999999776
No 256
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=24.34 E-value=1.1e+02 Score=22.31 Aligned_cols=39 Identities=8% Similarity=0.102 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI 107 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI 107 (125)
..+.++++++.+.+.+ -+-+|++..+...+..+.+++|+
T Consensus 122 l~pG~~efl~~L~~~G---Ipv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 122 LKDGYENFFDKLQQHS---IPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred cCcCHHHHHHHHHHCC---CcEEEEeCCcHHHHHHHHHHcCC
Confidence 3456777777776542 46789999998889999999887
No 257
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=24.32 E-value=87 Score=17.81 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=14.6
Q ss_pred eEEEecCCc-ccHHHHHHHhCC
Q 039753 87 TYVIADGNV-EQGIKVAEKLNI 107 (125)
Q Consensus 87 ~~iI~D~~~-~w~~~vA~~lgI 107 (125)
..+|.-.+. .-+.++|++|||
T Consensus 48 r~ivVtp~id~~a~~~A~~LGI 69 (70)
T PF07788_consen 48 RLIVVTPYIDDRAKEMAEELGI 69 (70)
T ss_pred eEEEEEeecCHHHHHHHHHhCC
Confidence 344444444 469999999998
No 258
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=24.29 E-value=88 Score=20.73 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCce
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~ 109 (125)
.+.++++++.+.+. -+.+|+++.+..++..+.+++|++.
T Consensus 70 ~pg~~e~L~~L~~~----~~~~IvS~~~~~~~~~~l~~~gl~~ 108 (205)
T PRK13582 70 LPGAVEFLDWLRER----FQVVILSDTFYEFAGPLMRQLGWPT 108 (205)
T ss_pred CCCHHHHHHHHHhc----CCEEEEeCCcHHHHHHHHHHcCCch
Confidence 35577788887642 2457899999999999999999974
No 259
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.19 E-value=1.3e+02 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=21.7
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE-cchh
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF-WPAA 116 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f-~t~~ 116 (125)
..+.++.+....-+..+.+++|||.+.+ .+.+
T Consensus 225 ~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G 257 (417)
T cd01966 225 AATLAIGESMRKAAEALEERTGVPYYVFPSLTG 257 (417)
T ss_pred eEEEEECHHHHHHHHHHHHHHCCCeeecCCCcc
Confidence 4556665554455777889999999876 3443
No 260
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=24.08 E-value=2.1e+02 Score=21.92 Aligned_cols=41 Identities=24% Similarity=0.007 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCc-----ccHHHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIADGNV-----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~-----~w~~~vA~~lgIP~~~f~ 113 (125)
.++++++.+... .+|-.| .+.-. ....++|+++|+|.+.-+
T Consensus 200 ~i~~~~~~l~~A---krPvi~-~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 200 SLDELWDRLNQA---KRGVIV-AGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred hHHHHHHHHhhc---CCcEEE-EcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 466666666543 356444 44332 234679999999998643
No 261
>CHL00067 rps2 ribosomal protein S2
Probab=24.00 E-value=1.5e+02 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=23.0
Q ss_pred CeeE-EEecCCcc-cHHHHHHHhCCceEEEcch
Q 039753 85 NITY-VIADGNVE-QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~-iI~D~~~~-w~~~vA~~lgIP~~~f~t~ 115 (125)
.|++ ||.|.-.. -+..=|.++|||.+.+.=+
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDT 193 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDT 193 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeC
Confidence 4654 66677654 6888899999999987543
No 262
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=23.96 E-value=72 Score=23.81 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHHhCCceEEEcch
Q 039753 98 GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~ 115 (125)
..++|+++|+|.+.|.=+
T Consensus 146 lm~lA~~f~lPIItlvDT 163 (322)
T CHL00198 146 LMKHANKFGLPILTFIDT 163 (322)
T ss_pred HHHHHHHcCCCEEEEEeC
Confidence 468999999999988533
No 263
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=23.90 E-value=51 Score=18.26 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=10.7
Q ss_pred HHHHHHHhCCce
Q 039753 98 GIKVAEKLNIQS 109 (125)
Q Consensus 98 ~~~vA~~lgIP~ 109 (125)
+.++|+++||+.
T Consensus 25 a~eLa~~lgl~~ 36 (68)
T smart00550 25 ALQLAKNLGLPK 36 (68)
T ss_pred HHHHHHHHCCCH
Confidence 889999999975
No 264
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=23.67 E-value=72 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.4
Q ss_pred HHHHHHHhCCceEEEcch
Q 039753 98 GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~ 115 (125)
..++|++||+|.+.|.=+
T Consensus 143 ~m~lA~~f~lPIVtlvDT 160 (319)
T PRK05724 143 LMKMAEKFGLPIITFIDT 160 (319)
T ss_pred HHHHHHHcCCCEEEEEeC
Confidence 467899999999988533
No 265
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=23.55 E-value=1.9e+02 Score=17.77 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHH
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEK 104 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~ 104 (125)
.+++.++++.+. .-..|.+|++.+--..+|.+
T Consensus 47 ~l~~~i~~~~~~----~~vivltDl~GGSp~n~a~~ 78 (116)
T TIGR00824 47 KYNAALADLDTE----EEVLFLVDIFGGSPYNAAAR 78 (116)
T ss_pred HHHHHHHhcCCC----CCEEEEEeCCCCCHHHHHHH
Confidence 345556665432 33589999988765555554
No 266
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.50 E-value=53 Score=19.01 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=10.1
Q ss_pred ccHHHHHHHhCC
Q 039753 96 EQGIKVAEKLNI 107 (125)
Q Consensus 96 ~w~~~vA~~lgI 107 (125)
.-+.|||.++|+
T Consensus 65 ~~a~~va~k~g~ 76 (77)
T TIGR03636 65 YAAEEIASRLGV 76 (77)
T ss_pred CcHHHHHHhhcc
Confidence 459999999996
No 267
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=23.41 E-value=2.4e+02 Score=19.25 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=18.1
Q ss_pred CeeEEEecCCcc----cHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVE----QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~----w~~~vA~~lgIP~~~f~t 114 (125)
+++.||...... -..+.+++.|||.+.+..
T Consensus 60 ~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~ 93 (272)
T cd06300 60 GVDAIIINPASPTALNPVIEEACEAGIPVVSFDG 93 (272)
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEec
Confidence 567766654321 134566677888887754
No 268
>TIGR01333 cyt_b559_beta cytochrome b559, beta subunit. This model describes the beta subunit of cytochrome b559, about 40 residues in length. It is homologous to the N-terminal half of the alpha subunit, a protein of about 83 residues. Cytochrome b559 is associated with photosystem II.
Probab=23.35 E-value=62 Score=16.28 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.0
Q ss_pred HHHhCCceEEEcchhHHHH
Q 039753 102 AEKLNIQSAAFWPAAAAVL 120 (125)
Q Consensus 102 A~~lgIP~~~f~t~~a~~~ 120 (125)
-..++||.+.|..+-+++-
T Consensus 21 vH~lavPtVfflGaI~amQ 39 (43)
T TIGR01333 21 IHALAIPTVFFFGAITAMQ 39 (43)
T ss_pred hhcccCCceeeccHHHHHH
Confidence 3568999999887766543
No 269
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=23.32 E-value=74 Score=19.89 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=15.8
Q ss_pred ccHHHHHHHhCCceEEEcch
Q 039753 96 EQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 96 ~w~~~vA~~lgIP~~~f~t~ 115 (125)
+-..++|+++|+|...|...
T Consensus 48 ~~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 48 PGLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp HHHHHHHHHCTSEEEEE-HH
T ss_pred HHHHHHHHHhCCCeEEECHH
Confidence 35789999999999888643
No 270
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=23.32 E-value=2e+02 Score=17.95 Aligned_cols=38 Identities=18% Similarity=0.052 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCce
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQS 109 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~ 109 (125)
..+.+.|.++... .-..++.-.+-++ ..++|+++|||.
T Consensus 97 ~~l~~~l~~L~~~----~r~i~~l~~~~g~s~~eIA~~lgis~ 135 (154)
T TIGR02950 97 EEITHHLSRLPEN----YRTVLILREFKEFSYKEIAELLNLSL 135 (154)
T ss_pred HHHHHHHHhCCHh----heeeeeehhhccCcHHHHHHHHCCCH
Confidence 3466667666321 1122332334454 888999999984
No 271
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=23.29 E-value=1.6e+02 Score=16.90 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=19.3
Q ss_pred CCeeEEEecCC---------cccHHHHHHHhCCceE
Q 039753 84 ENITYVIADGN---------VEQGIKVAEKLNIQSA 110 (125)
Q Consensus 84 ~~~~~iI~D~~---------~~w~~~vA~~lgIP~~ 110 (125)
.++++||.-.- ..+....|.+.|||.+
T Consensus 54 g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 54 GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 47888877332 2367788999999975
No 272
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=23.26 E-value=2.2e+02 Score=22.13 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=21.6
Q ss_pred CeeEEEecCCccc------------HHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQ------------GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w------------~~~vA~~lgIP~~~f~t~ 115 (125)
..+.+|....++| ..|+|+.+|.|.+.-...
T Consensus 77 ~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~ 119 (449)
T TIGR00379 77 GTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNC 119 (449)
T ss_pred cCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECC
Confidence 3466775554332 679999999998876643
No 273
>PRK00784 cobyric acid synthase; Provisional
Probab=23.22 E-value=2e+02 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=21.7
Q ss_pred CeeEEEecCC-----cc------cHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGN-----VE------QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~-----~~------w~~~vA~~lgIP~~~f~t 114 (125)
+.+.+|.+.. ++ -..++|+.+|.|.+.-..
T Consensus 125 ~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~PVILV~~ 165 (488)
T PRK00784 125 EYDVVVVEGAGSPAEINLRDRDIANMGFAEAADAPVILVAD 165 (488)
T ss_pred cCCEEEEECCCCccccCcccCCchhHHHHHHcCCCEEEEEe
Confidence 4577887754 21 266999999999988664
No 274
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=23.12 E-value=2.2e+02 Score=18.51 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.0
Q ss_pred EecCCcccHHHHHHHhCCceE
Q 039753 90 IADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 90 I~D~~~~w~~~vA~~lgIP~~ 110 (125)
|.-.-+.++.++++.+|+|.+
T Consensus 38 v~~GG~~fa~~L~~~L~~~~v 58 (156)
T PRK09177 38 VTRGGLVPAAILARELGIRLV 58 (156)
T ss_pred EecCCeehHHHHHHHcCCCce
Confidence 334455679999999999964
No 275
>KOG3321 consensus Mitochondrial ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=23.11 E-value=25 Score=23.51 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=19.7
Q ss_pred EecCCcccHHHHHHHhCCceEEEc
Q 039753 90 IADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 90 I~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
+.|.+..++...|..+|||-=.-+
T Consensus 60 vLdsYt~Fi~~ta~~LgIp~~~~~ 83 (175)
T KOG3321|consen 60 VLDSYTDFICRTAYYLGIPIKGPE 83 (175)
T ss_pred HHHHHHHHHHHHHHHhCCccCCCC
Confidence 678888899999999999864443
No 276
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=23.07 E-value=2.2e+02 Score=22.78 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=23.0
Q ss_pred CeeEEEecCCccc--HHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVEQ--GIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~lgIP~~~ 111 (125)
+=+++-+|.|+++ +.+.|.+.||-.++
T Consensus 451 ~G~vlASDAFFPF~D~ve~aa~aGi~aIi 479 (511)
T TIGR00355 451 KGSSLASDAFFPFRDGVEEAAAAGITCII 479 (511)
T ss_pred cCcEEEeccccCCCccHHHHHHcCCEEEE
Confidence 3468999999986 89999999998775
No 277
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=23.00 E-value=2.4e+02 Score=19.22 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc---H--HHHH------HHhCCceEEEcchhH
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ---G--IKVA------EKLNIQSAAFWPAAA 117 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w---~--~~vA------~~lgIP~~~f~t~~a 117 (125)
+.+.++++... +++.+||.+.+++- . .++. ++.+.|.+++--..|
T Consensus 26 l~~~l~~a~~d---~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a 81 (211)
T cd07019 26 TAAQIRDARLD---PKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAA 81 (211)
T ss_pred HHHHHHHHhhC---CCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 44444554432 57899999887642 1 1222 245789999975444
No 278
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.82 E-value=2e+02 Score=20.90 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=27.5
Q ss_pred HchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCce
Q 039753 65 VMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQS 109 (125)
Q Consensus 65 ~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~ 109 (125)
.....++++|++..-+. ..++++|.=-...+ ...+++++|+|.
T Consensus 240 ~~~~~~~~~L~~~g~~~--~did~~i~H~~~~~~~~~~~~~lgl~~ 283 (338)
T PRK09258 240 LAVDTWEAFLAQLGWAV--EQVDRVICHQVGAAHTRAILKALGIDP 283 (338)
T ss_pred HHHHHHHHHHHHcCCCH--HHCCEEecCCCCHHHHHHHHHHhCCCH
Confidence 33445566665543211 35788888777755 556999999985
No 279
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=22.79 E-value=1.7e+02 Score=20.89 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=29.9
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEEE
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~f 112 (125)
+.....+++++++..-+. ..+++++.--...+ ...+++++|+|.-.+
T Consensus 223 ~~~~~~i~~~l~~~g~~~--~di~~~~~h~~~~~~~~~~~~~lgl~~~~~ 270 (320)
T cd00830 223 RLMPESIEEALEKAGLTP--DDIDWFVPHQANLRIIEAVAKRLGLPEEKV 270 (320)
T ss_pred HhhHHHHHHHHHHcCCCH--HHCCEEEECCCCHHHHHHHHHHhCCCHHHh
Confidence 344556666666643221 35788888777765 555999999984433
No 280
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.67 E-value=95 Score=24.14 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=20.7
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
..+.++.+.....+..+.+++|||.+.+
T Consensus 236 ~lniv~~~~~~~~a~~Lee~~GiP~~~~ 263 (455)
T PRK14476 236 AATIAIGESMRKAAEALEARTGVPYLVF 263 (455)
T ss_pred cEEEEecHHHHHHHHHHHHHhCCCeEec
Confidence 4566666655556788899999998876
No 281
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.63 E-value=78 Score=23.54 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHHhCCceEEEcch
Q 039753 98 GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~ 115 (125)
..++|+++|+|.+.|.=+
T Consensus 143 ~m~lA~~f~iPvVtlvDT 160 (316)
T TIGR00513 143 LMKMAERFKMPIITFIDT 160 (316)
T ss_pred HHHHHHHcCCCEEEEEEC
Confidence 468899999999988533
No 282
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=22.62 E-value=1.6e+02 Score=16.74 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=12.9
Q ss_pred HHHHHHHhCC---ceEEEcch
Q 039753 98 GIKVAEKLNI---QSAAFWPA 115 (125)
Q Consensus 98 ~~~vA~~lgI---P~~~f~t~ 115 (125)
...+++++|| |.++++..
T Consensus 64 ~~~~~~~~~i~~~Pt~~~~~~ 84 (104)
T cd02997 64 HDALKEEYNVKGFPTFKYFEN 84 (104)
T ss_pred cHHHHHhCCCccccEEEEEeC
Confidence 5678888887 77666653
No 283
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=22.60 E-value=2.3e+02 Score=20.67 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=23.4
Q ss_pred CCeeEEEecCCcc------cHHHHHHHhCCceEEEcchh
Q 039753 84 ENITYVIADGNVE------QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 84 ~~~~~iI~D~~~~------w~~~vA~~lgIP~~~f~t~~ 116 (125)
.++..||-....+ -...++++++||.+.+...+
T Consensus 62 ~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~~~~ 100 (362)
T cd06367 62 QVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRE 100 (362)
T ss_pred cceEEEEecCCCCccchhhhhhhhhhhhcCcEEEeeccc
Confidence 3577777665543 25778999999999876544
No 284
>PRK01060 endonuclease IV; Provisional
Probab=22.57 E-value=81 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.7
Q ss_pred cHHHHHHHhCCceEEEcchh
Q 039753 97 QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+.++|+++|.+.+++++..
T Consensus 93 ~~i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCc
Confidence 45588999999999998764
No 285
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=22.53 E-value=1.7e+02 Score=21.14 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHH-HHHHhCCceEEE
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQGIK-VAEKLNIQSAAF 112 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~-vA~~lgIP~~~f 112 (125)
+.+...++++|++..-+. ..+++++.-....+..+ +++++|||.-.+
T Consensus 227 ~~~~~~~~~~L~~~gl~~--~did~~~~h~~~~~~~~~~~~~l~l~~~k~ 274 (326)
T PRK05963 227 RMMSGASQNVLASAAMTP--QDIDRFFPHQANARIVDKVCETIGIPRAKA 274 (326)
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEeCCCCHHHHHHHHHHcCCCHHHh
Confidence 334445556665542211 35788888888777544 899999985544
No 286
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=22.52 E-value=2.5e+02 Score=18.92 Aligned_cols=30 Identities=3% Similarity=0.030 Sum_probs=18.6
Q ss_pred CeeEEEecCCcc-c--HHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVE-Q--GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~-w--~~~vA~~lgIP~~~f~t 114 (125)
.++.||...... . ..+.+++.|||.+.+..
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~ 87 (266)
T cd06282 55 RVDGLILTVADAATSPALDLLDAERVPYVLAYN 87 (266)
T ss_pred CCCEEEEecCCCCchHHHHHHhhCCCCEEEEec
Confidence 567777654321 2 34566788999887754
No 287
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=22.47 E-value=1.2e+02 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=19.0
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
+|+.+|.. ++...+|+|+|||.+
T Consensus 397 ~pDliig~---s~~~~~A~klgiP~v 419 (461)
T TIGR01860 397 KPDVIFTG---PRVGELVKKLHIPYV 419 (461)
T ss_pred CCCEEEeC---CcchhhHhhcCCCEE
Confidence 67888766 477889999999987
No 288
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.47 E-value=2e+02 Score=17.65 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHh
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKL 105 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~l 105 (125)
.+++.+++... ..--.|++|++.+-...++.++
T Consensus 46 ~i~~~i~~~~~----~~~viil~Dl~GGSp~n~~~~~ 78 (122)
T cd00006 46 KIKAALAELDS----GEGVLILTDLFGGSPNNAAARL 78 (122)
T ss_pred HHHHHHHHhCC----CCcEEEEEeCCCCCHHHHHHHH
Confidence 34555556532 2346899999887655555443
No 289
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.43 E-value=2.6e+02 Score=19.37 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=18.6
Q ss_pred CeeEEEecCCc----ccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNV----EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~t 114 (125)
+++.||....- .....-+.+.|||.+.+..
T Consensus 55 ~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (272)
T cd06313 55 GWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGT 88 (272)
T ss_pred CCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCC
Confidence 57777775432 1223345667999988865
No 290
>PRK14433 acylphosphatase; Provisional
Probab=22.27 E-value=75 Score=18.65 Aligned_cols=27 Identities=15% Similarity=-0.167 Sum_probs=19.5
Q ss_pred EEEecC-CcccHHHHHHHhCCceEEEcc
Q 039753 88 YVIADG-NVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 88 ~iI~D~-~~~w~~~vA~~lgIP~~~f~t 114 (125)
-.|-.. |=+|+...|.++||..++-..
T Consensus 9 G~VQGVGFR~~v~~~A~~~~l~G~V~N~ 36 (87)
T PRK14433 9 GRVQGVGYRAFVQKKARELGLSGYAENL 36 (87)
T ss_pred EeeeCcCchHHHHHHHHHcCCEEEEEEC
Confidence 344444 447999999999998776443
No 291
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.22 E-value=2.7e+02 Score=22.18 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCc-----ccHHHHHHHhCCceEE
Q 039753 68 RKREELIKDSNARETHENITYVIADGNV-----EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~-----~w~~~vA~~lgIP~~~ 111 (125)
..++++++.|... .+|..++-.... .-..++|+++|+|.+.
T Consensus 194 ~~i~~a~~~L~~A---~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~t 239 (574)
T PRK07979 194 GQIKRALQTLVAA---KKPVVYVGGGAINAACHQQLKELVEKLNLPVVS 239 (574)
T ss_pred HHHHHHHHHHHcC---CCCEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence 3466777776543 466555444432 1256799999999885
No 292
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.17 E-value=2.5e+02 Score=18.99 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=18.4
Q ss_pred CeeEEEecCCc--ccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNV--EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~--~w~~~vA~~lgIP~~~f~t 114 (125)
.++.||..... ....+.+.+.|||.+.+-.
T Consensus 54 ~vdgiii~~~~~~~~~~~~~~~~~ipvV~~~~ 85 (266)
T cd06278 54 RVDGVIVTSGTLSSELAEECRRNGIPVVLINR 85 (266)
T ss_pred CCCEEEEecCCCCHHHHHHHhhcCCCEEEECC
Confidence 46666654432 2344567777999888753
No 293
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.90 E-value=50 Score=23.28 Aligned_cols=13 Identities=15% Similarity=-0.153 Sum_probs=10.6
Q ss_pred EEEecCCcccHHH
Q 039753 88 YVIADGNVEQGIK 100 (125)
Q Consensus 88 ~iI~D~~~~w~~~ 100 (125)
-+.+|+.|+|+.-
T Consensus 9 ~v~sD~vCPwC~i 21 (225)
T COG2761 9 DVFSDVVCPWCYI 21 (225)
T ss_pred EEEeCCcCchhhc
Confidence 4889999999754
No 294
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=21.83 E-value=1.4e+02 Score=15.68 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=17.0
Q ss_pred CCeeEEEecCCcccHHHHHHHhCC---ceEEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNI---QSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f 112 (125)
+.+.....|.-- -.++++++|| |.+.+
T Consensus 29 ~~i~~~~id~~~--~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 29 PNISAEMIDAAE--FPDLADEYGVMSVPAIVI 58 (67)
T ss_pred CceEEEEEEccc--CHhHHHHcCCcccCEEEE
Confidence 356777777532 2578888875 66544
No 295
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=21.81 E-value=1.8e+02 Score=21.77 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=27.7
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCce
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQS 109 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~ 109 (125)
+.+...++++|++..-.. ..++++|.=-...+ ...+++++|+|.
T Consensus 280 ~~~~~~i~~~L~~~gl~~--~dId~~v~Hq~n~~~~~~~~~~Lgl~~ 324 (379)
T PLN02326 280 RCVPQVIESALQKAGLTA--ESIDWLLLHQANQRIIDAVAQRLGIPP 324 (379)
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEECCCCHHHHHHHHHHcCCCH
Confidence 344445566665542211 35788887777754 455999999984
No 296
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=21.68 E-value=1.9e+02 Score=22.01 Aligned_cols=32 Identities=6% Similarity=-0.058 Sum_probs=22.1
Q ss_pred CeeEEEec-CCcccHHHHHHHhCCceEEEcchh
Q 039753 85 NITYVIAD-GNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~~iI~D-~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
..+.+++. .....+..+.+++|+|.+.+-+.+
T Consensus 211 ~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~G 243 (415)
T cd01977 211 KLNVVNCARSAGYIANELKKRYGIPRLDVDGFG 243 (415)
T ss_pred CEEEEEchhHHHHHHHHHHHHhCCCeEEeccCC
Confidence 34555554 344578889999999998775443
No 297
>PRK09604 UGMP family protein; Validated
Probab=21.61 E-value=2.7e+02 Score=20.57 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=33.3
Q ss_pred HchHHHHHHHHHhhhcCCCCCeeEEEecC----Cccc------HHHHHHHhCCceEEEcchhHHHHH
Q 039753 65 VMPRKREELIKDSNARETHENITYVIADG----NVEQ------GIKVAEKLNIQSAAFWPAAAAVLA 121 (125)
Q Consensus 65 ~~~~~~~~~l~~l~~~~~~~~~~~iI~D~----~~~w------~~~vA~~lgIP~~~f~t~~a~~~~ 121 (125)
.+.+.++++|++..-+. ..+++|.+.. |.++ ++.+|..+|||.+.....-+-..+
T Consensus 54 ~l~~~i~~~L~~~~~~~--~did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl~~v~h~~~ha~~ 118 (332)
T PRK09604 54 NIVPLIEEALKEAGLTL--EDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPLIGVNHLEGHLLA 118 (332)
T ss_pred HHHHHHHHHHHHcCCCH--HHCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCEEeecCHHHHHHh
Confidence 34555666666543221 3467777774 2233 777888899998777664444444
No 298
>PRK12677 xylose isomerase; Provisional
Probab=21.60 E-value=85 Score=23.88 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.3
Q ss_pred cHHHHHHHhCCceEEEcch
Q 039753 97 QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~ 115 (125)
.+.++|+++|.|.++.|+.
T Consensus 118 r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 118 RNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred HHHHHHHHhCCCEEEEeeC
Confidence 3568999999999999976
No 299
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=21.57 E-value=67 Score=22.06 Aligned_cols=30 Identities=13% Similarity=-0.055 Sum_probs=25.3
Q ss_pred eeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 86 ITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 86 ~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
..+.+.||=..-...+|++.|||.+.+...
T Consensus 125 ~ga~aVdMEsaava~va~~~gip~~~ir~I 154 (212)
T TIGR03468 125 TGAAAVDMESGAVAAVAAAAGLPFAVIRVI 154 (212)
T ss_pred cCCcEEeChHHHHHHHHHHcCCCEEEEEEE
Confidence 467899998888889999999999987654
No 300
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=21.55 E-value=40 Score=22.85 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=11.4
Q ss_pred cccccCCCEEEEEeCcc
Q 039753 2 QWLVKHGFTITLSNTEY 18 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~ 18 (125)
+.+..+|..||++..+.
T Consensus 37 ~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 37 EEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHTT-EEEEEE-TT
T ss_pred HHHHHCCCEEEEEecCc
Confidence 45567999999997663
No 301
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.45 E-value=41 Score=22.19 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=12.5
Q ss_pred CcccccCCCEEEEEe
Q 039753 1 SQWLVKHGFTITLSN 15 (125)
Q Consensus 1 a~~L~~~G~~VT~v~ 15 (125)
||.|..+|+.|+++.
T Consensus 45 AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 45 ARHLANRGYNVTVYL 59 (169)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCeEEEEE
Confidence 578889999999954
No 302
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=21.39 E-value=2.2e+02 Score=21.34 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=19.0
Q ss_pred CCeeEEEecCCcccHHHH--HHHhCCceEEEcch
Q 039753 84 ENITYVIADGNVEQGIKV--AEKLNIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~v--A~~lgIP~~~f~t~ 115 (125)
.+|++||++.-.+...-+ +.+++||.+...|-
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATVMTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCC
Confidence 379999997554422222 23468998755443
No 303
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.31 E-value=2.5e+02 Score=18.45 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=29.4
Q ss_pred HHHHHHhhhcCCCCCeeEEEecCCcc----cHHHHHHHhCCceEEEcchhHH
Q 039753 71 EELIKDSNARETHENITYVIADGNVE----QGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 71 ~~~l~~l~~~~~~~~~~~iI~D~~~~----w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
+++++.++. .+|++|+.=+-++ |+....++++.+ +.+...+++
T Consensus 91 ~~i~~~I~~----~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 91 EAIINRINA----SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 344445544 3678888888776 899999999988 555444443
No 304
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=21.21 E-value=83 Score=23.77 Aligned_cols=21 Identities=29% Similarity=0.145 Sum_probs=14.4
Q ss_pred HHHHHHHhCCceEEEcchhHH
Q 039753 98 GIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~~a~ 118 (125)
+..||++||||.++.--...+
T Consensus 54 a~~va~~LgIp~~v~d~~~~f 74 (356)
T PF03054_consen 54 ARRVAEKLGIPHYVVDLREEF 74 (356)
T ss_dssp HHHHHHHHT--EEEEETHHHH
T ss_pred HHHHHHhcCCCEEEEChHHHH
Confidence 778999999999887655443
No 305
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=21.17 E-value=1.8e+02 Score=16.56 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
+.++++.+++... ..+.++-.|.--. ..++++++|| |.+.++.
T Consensus 38 ~~~~~~~~~~~~~---~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~ 83 (105)
T cd02998 38 PEYEKLAAVFANE---DDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFP 83 (105)
T ss_pred hHHHHHHHHhCCC---CCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEe
Confidence 3455555554311 2344433443221 5688888865 7777664
No 306
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=21.11 E-value=59 Score=16.71 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=9.8
Q ss_pred HHHHHHHhCCce
Q 039753 98 GIKVAEKLNIQS 109 (125)
Q Consensus 98 ~~~vA~~lgIP~ 109 (125)
..++|+++|+|.
T Consensus 21 ~~eia~~~gl~~ 32 (52)
T PF09339_consen 21 LSEIARALGLPK 32 (52)
T ss_dssp HHHHHHHHTS-H
T ss_pred HHHHHHHHCcCH
Confidence 788999999985
No 307
>PRK03011 butyrate kinase; Provisional
Probab=21.07 E-value=88 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=15.5
Q ss_pred cHHHHHHHhCCceEEEcchh
Q 039753 97 QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~~ 116 (125)
-+.++|+++|+|.++|-|.+
T Consensus 112 ~a~~~~~~~~~p~~v~D~~~ 131 (358)
T PRK03011 112 IAYEIAKELGIPAFIVDPVV 131 (358)
T ss_pred HHHHHHHhcCCCEEEECCcc
Confidence 36778888899988888744
No 308
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=21.04 E-value=2.3e+02 Score=19.39 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=17.4
Q ss_pred CeeEEEecCCcc----cHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVE----QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~----w~~~vA~~lgIP~~~f~t 114 (125)
.+++||...... -....+++.|||.+.+-.
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNVND 90 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEECC
Confidence 467776644221 123455677888887743
No 309
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=21.02 E-value=71 Score=15.12 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=11.9
Q ss_pred cccHHHHHHHhCCce
Q 039753 95 VEQGIKVAEKLNIQS 109 (125)
Q Consensus 95 ~~w~~~vA~~lgIP~ 109 (125)
+.+..+.|+.|||+.
T Consensus 16 F~Si~eAa~~l~i~~ 30 (37)
T PF07453_consen 16 FDSIREAARYLGISH 30 (37)
T ss_pred EcCHHHHHHHhCCCH
Confidence 457889999999864
No 310
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.01 E-value=1.9e+02 Score=20.82 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=28.4
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCce
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQS 109 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~ 109 (125)
+.+...++++|++..-+. ..+++++.=-...+ ...+++++|+|.
T Consensus 225 ~~~~~~i~~~L~~~g~~~--~did~~~~h~~~~~~~~~~~~~lg~~~ 269 (325)
T PRK12879 225 RTMPKGARQVLEKAGLTK--DDIDWVIPHQANLRIIESLCEKLGIPM 269 (325)
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEECCCCHHHHHHHHHHcCCCH
Confidence 344455666666543211 35788887776665 456999999985
No 311
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.01 E-value=2e+02 Score=17.16 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=20.6
Q ss_pred CCeeEEEecC-------CcccHHHHHHHhCCceE
Q 039753 84 ENITYVIADG-------NVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 84 ~~~~~iI~D~-------~~~w~~~vA~~lgIP~~ 110 (125)
.++++||.-. -..|....|-++|||.+
T Consensus 66 ~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 66 GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEE
Confidence 4788888732 23578889999999987
No 312
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=20.97 E-value=2.3e+02 Score=22.61 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCccc------HHHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQ------GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w------~~~vA~~lgIP~~~f~ 113 (125)
.++++++.|.+. .+| .||.+.-..+ ..++|+++|+|.+.-+
T Consensus 199 ~i~~~~~~L~~A---~rP-vil~G~g~~~~~a~~~l~~lae~l~~pv~tt~ 245 (566)
T PRK07282 199 QIKKILKQLSKA---KKP-VILAGGGINYAEAATELNAFAERYQIPVVTTL 245 (566)
T ss_pred HHHHHHHHHHcC---CCc-EEEECCCcCcccHHHHHHHHHHHhCCCEEecc
Confidence 466777666543 355 3455544432 4568999999988543
No 313
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=20.93 E-value=1.8e+02 Score=22.71 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=23.3
Q ss_pred CeeEEEecC-CcccHHHHHHHhCCceEEEc-chhH
Q 039753 85 NITYVIADG-NVEQGIKVAEKLNIQSAAFW-PAAA 117 (125)
Q Consensus 85 ~~~~iI~D~-~~~w~~~vA~~lgIP~~~f~-t~~a 117 (125)
..+.++++. ....+..+.+++|||.+.+- +.+.
T Consensus 232 ~~nlv~~~~~g~~~A~~Lee~fGiPy~~~~~p~G~ 266 (457)
T TIGR02932 232 IATLALAKYEGGNTAEFLQETFDVPSILVPTPYGI 266 (457)
T ss_pred cEEEEEcccchHHHHHHHHHHHCCCeeccCCCcCh
Confidence 456677665 34678889999999998764 4443
No 314
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.89 E-value=2.2e+02 Score=19.38 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=21.0
Q ss_pred CeeEEEecCCcc-------------------cHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVE-------------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~-------------------w~~~vA~~lgIP~~~f~ 113 (125)
.++.||.|.+.. +...+|+++|++.++..
T Consensus 123 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 123 GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 578888888642 24567788899888765
No 315
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=20.89 E-value=2.1e+02 Score=17.30 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
.+.++++.++. +.+..+-.|. .-..++|++++| |.+.|+
T Consensus 41 ~p~l~~la~~~------~~i~f~~Vd~--~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 41 DKHLEILAKKH------LETKFIKVNA--EKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred HHHHHHHHHHc------CCCEEEEEEc--ccCHHHHHHCCCccCCEEEEE
Confidence 34455555443 2344444553 335679999975 777665
No 316
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=20.78 E-value=1e+02 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=0.4
Q ss_pred eeEEEecCCc-ccHHHHHHHhCCceEEE
Q 039753 86 ITYVIADGNV-EQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 86 ~~~iI~D~~~-~w~~~vA~~lgIP~~~f 112 (125)
...|.+=.-. ..+..+|+++|++.++-
T Consensus 242 ~~lv~~GG~g~~~~~~la~~lg~~~v~~ 269 (290)
T PF01968_consen 242 FPLVAFGGAGPLHAPELAEELGIPRVVP 269 (290)
T ss_dssp E---------------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3344443333 46899999999987653
No 317
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.77 E-value=94 Score=20.35 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.8
Q ss_pred HHHHHHHhCCceEEEcch
Q 039753 98 GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~ 115 (125)
..++|+++|++.+++++.
T Consensus 76 ~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 76 AIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHhCCCceeecCc
Confidence 557889999999998865
No 318
>PLN02285 methionyl-tRNA formyltransferase
Probab=20.58 E-value=3.3e+02 Score=20.30 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc----------cHHHHHHHhCCceEE
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE----------QGIKVAEKLNIQSAA 111 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~----------w~~~vA~~lgIP~~~ 111 (125)
.|+.+++...+....-.+..||++.=-. -....|.+.|||...
T Consensus 21 ~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~ 73 (334)
T PLN02285 21 VLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDL 73 (334)
T ss_pred HHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcce
Confidence 4555555432211113577888875322 378899999999653
No 319
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=20.39 E-value=2.5e+02 Score=20.44 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~ 113 (125)
..+.++++.+.+ ..+.+|++..-.+ ++..+|++.|++.....
T Consensus 228 ~~l~~l~~~ik~----~~i~~If~e~~~~~~~~~~la~e~g~~~~~~~ 271 (303)
T COG0803 228 KDLAKLVDLIKK----KNIKAIFVESNVSSKSAETLAKETGVKILGLL 271 (303)
T ss_pred HHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHhCCccccee
Confidence 345555555544 3567777776553 89999999998865443
No 320
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=20.38 E-value=45 Score=24.73 Aligned_cols=15 Identities=33% Similarity=0.590 Sum_probs=12.2
Q ss_pred CcccccCCCEEEEEe
Q 039753 1 SQWLVKHGFTITLSN 15 (125)
Q Consensus 1 a~~L~~~G~~VT~v~ 15 (125)
|++||.||+.|-++.
T Consensus 66 A~eLAkrG~nvvLIs 80 (312)
T KOG1014|consen 66 ARELAKRGFNVVLIS 80 (312)
T ss_pred HHHHHHcCCEEEEEe
Confidence 578999999977764
No 321
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.37 E-value=54 Score=23.45 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=22.1
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeec
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIP 43 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp 43 (125)
++.|..+|++|++++........ . ....+++++.+|
T Consensus 25 a~~L~~~g~~v~v~~~~~~~~~~--~-----~~~~~i~~~~~~ 60 (363)
T cd04955 25 APRLVARGHEVTVYCRSPYPKQK--E-----TEYNGVRLIHIP 60 (363)
T ss_pred HHHHHhcCCCEEEEEccCCCCCc--c-----cccCCceEEEcC
Confidence 35677899999999875432110 0 112467877776
No 322
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=20.31 E-value=1.7e+02 Score=23.53 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=21.5
Q ss_pred CeeEEEecCCc--ccHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNV--EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~--~w~~~vA~~lgIP~~~ 111 (125)
+...||.+.-. +-+.-||+++|||.++
T Consensus 399 ~a~GIVte~Gg~tSHaAivARelgiP~Vv 427 (530)
T PRK05878 399 AAQGIVTEVGGATSHAAVVSRELGRVAVV 427 (530)
T ss_pred hheEEEEccCCccchHHHHHHHcCCCEEE
Confidence 45678887743 5788899999999986
No 323
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.29 E-value=3.1e+02 Score=21.85 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcc------cHHHHHHHhCCceEEE
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVE------QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~------w~~~vA~~lgIP~~~f 112 (125)
..++++++.|.+. .+|. ||.+.-.. -...+|+++|+|.+.-
T Consensus 194 ~~i~~~~~~L~~A---~rPv-il~G~g~~~~~a~~~l~~lae~~~~pv~tt 240 (572)
T PRK08979 194 GQIKRGLQALLAA---KKPV-LYVGGGAIISGADKQILQLAEKLNLPVVST 240 (572)
T ss_pred HHHHHHHHHHHhC---CCCE-EEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 3466666666543 3564 44444332 2567999999998853
No 324
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=20.21 E-value=3.4e+02 Score=19.44 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHH
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~ 118 (125)
...++..++++.+.+ -+++.+| |.- .-..+.|++.|.+++=++|..-+
T Consensus 112 ~~~l~~~i~~L~~~g--IrVSLFi-dP~-~~qi~~A~~~GAd~VELhTG~yA 159 (239)
T PRK05265 112 FDKLKPAIARLKDAG--IRVSLFI-DPD-PEQIEAAAEVGADRIELHTGPYA 159 (239)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEe-CCC-HHHHHHHHHhCcCEEEEechhhh
Confidence 345677777777654 4677666 633 34778999999999999998754
No 325
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.20 E-value=1.9e+02 Score=22.13 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=21.8
Q ss_pred CeeEEEecC-CcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADG-NVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~-~~~w~~~vA~~lgIP~~~f 112 (125)
..+.+++.. ...++..+.+++|||.+.+
T Consensus 209 ~~niv~~~~~g~~~a~~L~~~~giP~i~~ 237 (427)
T cd01971 209 QFNLVLSPWVGLEFAQHLEEKYGQPYIHS 237 (427)
T ss_pred cEEEEEcHhhHHHHHHHHHHHhCCceEec
Confidence 566777665 3467888999999999987
No 326
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=20.01 E-value=3.1e+02 Score=20.81 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=19.3
Q ss_pred CeeEEEecCCcc----------cHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVE----------QGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~----------w~~~vA~~lgIP~~~ 111 (125)
.|+.+|+-..+. -+..|.+++|||.+.
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 578888765432 345688899999874
Done!