Query 039753
Match_columns 125
No_of_seqs 162 out of 1050
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 22:28:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 99.9 7.3E-26 2.5E-30 169.9 8.9 121 1-125 34-157 (454)
2 2pq6_A UDP-glucuronosyl/UDP-gl 99.8 5E-20 1.7E-24 138.9 9.7 124 1-124 29-157 (482)
3 2acv_A Triterpene UDP-glucosyl 99.8 8.1E-18 2.8E-22 126.4 11.8 120 1-124 30-153 (463)
4 2c1x_A UDP-glucose flavonoid 3 99.8 2.9E-18 1E-22 128.6 9.3 121 1-124 28-151 (456)
5 2vch_A Hydroquinone glucosyltr 99.7 6E-17 2E-21 122.2 10.2 118 1-124 27-149 (480)
6 2iya_A OLEI, oleandomycin glyc 99.4 9.1E-13 3.1E-17 97.1 10.5 104 1-117 33-141 (424)
7 1iir_A Glycosyltransferase GTF 99.1 3.2E-10 1.1E-14 83.5 7.1 104 1-118 21-129 (415)
8 2iyf_A OLED, oleandomycin glyc 99.0 2.4E-09 8.3E-14 78.7 10.2 104 1-117 28-136 (430)
9 3ia7_A CALG4; glycosysltransfe 98.9 5.5E-09 1.9E-13 75.8 8.6 103 1-116 25-134 (402)
10 1rrv_A Glycosyltransferase GTF 98.8 1.1E-08 3.9E-13 75.1 7.6 103 1-117 21-129 (416)
11 3rsc_A CALG2; TDP, enediyne, s 98.8 1.6E-08 5.5E-13 73.9 7.8 103 1-116 41-150 (415)
12 4amg_A Snogd; transferase, pol 98.6 5.5E-08 1.9E-12 70.6 6.5 103 1-117 43-160 (400)
13 2p6p_A Glycosyl transferase; X 98.6 2.6E-07 9E-12 66.9 8.7 102 1-115 21-137 (384)
14 2yjn_A ERYCIII, glycosyltransf 98.5 8.2E-07 2.8E-11 65.7 8.7 103 1-116 41-175 (441)
15 3oti_A CALG3; calicheamicin, T 98.4 3E-06 1E-10 61.7 10.1 98 1-115 41-160 (398)
16 4fzr_A SSFS6; structural genom 98.2 9E-06 3.1E-10 59.1 8.7 102 1-115 36-153 (398)
17 3h4t_A Glycosyltransferase GTF 98.2 1.9E-06 6.5E-11 63.2 4.8 102 1-117 21-127 (404)
18 3tsa_A SPNG, NDP-rhamnosyltran 98.1 1.4E-05 4.9E-10 57.8 8.3 31 85-115 114-144 (391)
19 3otg_A CALG1; calicheamicin, T 97.9 4.1E-05 1.4E-09 55.6 8.1 31 85-115 130-160 (412)
20 3s2u_A UDP-N-acetylglucosamine 96.6 0.0091 3.1E-07 43.1 7.5 92 1-112 23-121 (365)
21 1f0k_A MURG, UDP-N-acetylgluco 94.3 0.38 1.3E-05 33.8 9.0 96 2-113 28-126 (364)
22 3p9x_A Phosphoribosylglycinami 89.2 0.81 2.8E-05 30.8 5.2 46 70-115 16-61 (211)
23 4ds3_A Phosphoribosylglycinami 85.1 1.7 5.8E-05 29.1 4.9 30 85-114 36-65 (209)
24 1meo_A Phosophoribosylglycinam 83.9 2.7 9.3E-05 28.0 5.5 45 70-114 14-58 (209)
25 3tqr_A Phosphoribosylglycinami 82.1 2.6 8.9E-05 28.3 4.9 30 85-114 33-62 (215)
26 3fro_A GLGA glycogen synthase; 81.0 6 0.0002 28.1 6.8 110 1-113 28-152 (439)
27 3kcq_A Phosphoribosylglycinami 80.7 2.7 9.2E-05 28.3 4.6 30 85-114 37-66 (215)
28 3c48_A Predicted glycosyltrans 79.3 3.9 0.00013 29.3 5.4 97 2-113 53-152 (438)
29 1jkx_A GART;, phosphoribosylgl 79.1 4.5 0.00015 27.0 5.3 45 70-114 14-58 (212)
30 2q5c_A NTRC family transcripti 79.0 4.6 0.00016 26.5 5.2 42 68-116 129-170 (196)
31 2lpm_A Two-component response 75.9 3.1 0.00011 25.2 3.5 39 70-112 42-85 (123)
32 3lou_A Formyltetrahydrofolate 75.6 5.5 0.00019 28.0 5.1 44 68-113 107-150 (292)
33 3av3_A Phosphoribosylglycinami 75.4 5.2 0.00018 26.7 4.7 31 85-115 32-62 (212)
34 2ywr_A Phosphoribosylglycinami 75.1 6.5 0.00022 26.2 5.2 31 85-115 30-60 (216)
35 3n0v_A Formyltetrahydrofolate 74.8 6.1 0.00021 27.7 5.1 44 68-113 102-145 (286)
36 2pju_A Propionate catabolism o 74.4 7.6 0.00026 26.2 5.4 41 67-114 140-180 (225)
37 3okp_A GDP-mannose-dependent a 74.2 19 0.00066 25.0 7.9 83 7-114 33-117 (394)
38 1pq4_A Periplasmic binding pro 73.8 6.4 0.00022 27.4 5.1 50 68-121 224-275 (291)
39 3auf_A Glycinamide ribonucleot 73.1 6.6 0.00023 26.5 4.8 31 85-115 51-81 (229)
40 3to5_A CHEY homolog; alpha(5)b 72.5 6 0.00021 24.2 4.2 31 85-115 57-96 (134)
41 3da8_A Probable 5'-phosphoribo 72.2 5.8 0.0002 26.6 4.3 28 85-113 40-67 (215)
42 3gl9_A Response regulator; bet 68.8 11 0.00039 21.6 4.8 32 84-115 45-85 (122)
43 3o1l_A Formyltetrahydrofolate 68.6 8.5 0.00029 27.2 4.7 43 68-112 117-159 (302)
44 3t6k_A Response regulator rece 65.1 16 0.00056 21.3 5.1 32 84-115 47-87 (136)
45 4hwg_A UDP-N-acetylglucosamine 64.7 20 0.00068 25.9 6.2 39 68-113 84-124 (385)
46 3s28_A Sucrose synthase 1; gly 64.1 2.4 8.2E-05 34.1 1.3 29 84-112 406-436 (816)
47 3gi1_A LBP, laminin-binding pr 62.9 15 0.00051 25.5 5.1 42 69-114 216-259 (286)
48 2qsi_A Putative hydrogenase ex 62.4 22 0.00074 22.0 5.3 41 66-113 53-96 (137)
49 2r60_A Glycosyl transferase, g 62.2 18 0.00063 26.4 5.8 102 2-112 44-149 (499)
50 2o1e_A YCDH; alpha-beta protei 60.4 15 0.00052 25.8 4.8 43 69-115 227-271 (312)
51 3dzc_A UDP-N-acetylglucosamine 60.0 15 0.00051 26.4 4.9 38 69-113 102-142 (396)
52 3m6m_D Sensory/regulatory prot 59.0 16 0.00056 21.6 4.3 32 84-115 57-99 (143)
53 2prs_A High-affinity zinc upta 57.2 16 0.00054 25.2 4.4 44 69-116 211-256 (284)
54 3f6p_A Transcriptional regulat 56.7 25 0.00085 19.9 4.9 32 84-115 45-82 (120)
55 3cf4_G Acetyl-COA decarboxylas 54.8 35 0.0012 21.5 5.5 28 84-112 35-68 (170)
56 3nrb_A Formyltetrahydrofolate 53.7 4.6 0.00016 28.3 1.1 45 68-113 100-144 (287)
57 3pdi_B Nitrogenase MOFE cofact 53.7 19 0.00064 26.8 4.5 25 85-112 375-399 (458)
58 3hh8_A Metal ABC transporter s 53.0 22 0.00074 24.8 4.5 40 70-113 221-264 (294)
59 3cx3_A Lipoprotein; zinc-bindi 52.8 16 0.00055 25.2 3.9 42 69-114 214-257 (284)
60 3qxc_A Dethiobiotin synthetase 51.3 25 0.00085 23.8 4.5 42 69-115 120-170 (242)
61 3cg0_A Response regulator rece 48.5 30 0.001 19.9 4.2 31 85-115 54-91 (140)
62 3fvv_A Uncharacterized protein 48.0 45 0.0015 21.2 5.3 42 66-110 93-134 (232)
63 1dbw_A Transcriptional regulat 47.7 37 0.0013 19.2 5.5 32 84-115 46-84 (126)
64 2rjn_A Response regulator rece 47.5 42 0.0014 19.8 5.1 31 85-115 51-88 (154)
65 2a9o_A Response regulator; ess 47.4 35 0.0012 18.9 4.5 31 85-115 45-81 (120)
66 1yio_A Response regulatory pro 47.1 40 0.0014 21.2 4.9 32 84-115 47-85 (208)
67 2qzj_A Two-component response 46.7 36 0.0012 19.7 4.4 30 85-114 48-83 (136)
68 2d89_A EHBP1 protein; all alph 46.5 7 0.00024 23.6 1.0 16 96-111 70-85 (119)
69 3c3m_A Response regulator rece 46.4 41 0.0014 19.4 4.9 30 85-114 47-85 (138)
70 3obi_A Formyltetrahydrofolate 46.3 7.5 0.00026 27.3 1.3 45 68-113 101-145 (288)
71 3gt7_A Sensor protein; structu 45.6 46 0.0016 19.8 4.8 31 84-114 50-89 (154)
72 1zym_A Enzyme I; phosphotransf 45.1 21 0.00071 24.5 3.4 15 97-111 189-203 (258)
73 2qr3_A Two-component system re 45.0 43 0.0015 19.2 5.6 31 85-115 47-89 (140)
74 1boo_A Protein (N-4 cytosine-s 44.9 32 0.0011 24.1 4.4 30 85-114 251-282 (323)
75 1tmy_A CHEY protein, TMY; chem 44.4 40 0.0014 18.7 4.4 30 85-114 47-83 (120)
76 1eg2_A Modification methylase 44.0 32 0.0011 24.2 4.3 30 85-114 241-272 (319)
77 3b2n_A Uncharacterized protein 43.3 42 0.0014 19.3 4.3 30 85-114 49-85 (133)
78 1sfu_A 34L protein; protein/Z- 43.3 12 0.00041 20.8 1.6 13 97-109 31-43 (75)
79 1g60_A Adenine-specific methyl 42.3 39 0.0013 22.7 4.4 30 85-114 211-242 (260)
80 3jvp_A Ribulokinase; PSI-II, N 42.2 1.1E+02 0.0038 23.2 7.6 58 55-114 411-473 (572)
81 3rqi_A Response regulator prot 42.2 35 0.0012 21.2 4.0 41 71-115 41-88 (184)
82 2jk1_A HUPR, hydrogenase trans 42.1 49 0.0017 19.1 5.2 30 85-114 44-80 (139)
83 3cu5_A Two component transcrip 42.0 50 0.0017 19.2 4.9 30 85-114 49-85 (141)
84 2qxy_A Response regulator; reg 42.0 49 0.0017 19.1 4.6 29 85-114 48-83 (142)
85 3crn_A Response regulator rece 41.3 50 0.0017 18.9 4.9 30 85-114 47-83 (132)
86 3pvh_A UPF0603 protein AT1G547 41.1 47 0.0016 20.6 4.4 38 69-107 32-75 (153)
87 1p6q_A CHEY2; chemotaxis, sign 40.7 49 0.0017 18.7 4.7 22 84-105 50-73 (129)
88 3kto_A Response regulator rece 40.3 31 0.001 20.0 3.3 11 85-95 50-60 (136)
89 1srr_A SPO0F, sporulation resp 40.0 47 0.0016 18.6 4.1 30 85-114 47-83 (124)
90 1mb3_A Cell division response 39.8 49 0.0017 18.4 4.3 30 85-114 45-83 (124)
91 3h1g_A Chemotaxis protein CHEY 39.7 52 0.0018 18.7 5.3 31 85-115 51-90 (129)
92 3lte_A Response regulator; str 39.7 51 0.0018 18.6 4.9 31 85-115 50-88 (132)
93 1qkk_A DCTD, C4-dicarboxylate 39.5 55 0.0019 19.3 4.5 31 85-115 47-84 (155)
94 1v4v_A UDP-N-acetylglucosamine 39.5 39 0.0013 23.4 4.2 29 85-113 91-122 (376)
95 3a10_A Response regulator; pho 39.2 49 0.0017 18.2 5.3 30 85-114 45-81 (116)
96 4ewp_A 3-oxoacyl-[acyl-carrier 38.9 82 0.0028 22.0 5.8 52 57-110 242-294 (350)
97 1bkr_A Spectrin beta chain; fi 38.5 12 0.00041 22.1 1.2 16 96-111 64-80 (109)
98 1ilo_A Conserved hypothetical 38.4 41 0.0014 17.2 4.9 23 85-112 31-56 (77)
99 1kgs_A DRRD, DNA binding respo 38.2 65 0.0022 20.4 4.9 33 84-116 45-84 (225)
100 3cfy_A Putative LUXO repressor 38.1 58 0.002 18.8 4.4 30 85-114 48-84 (137)
101 1ys7_A Transcriptional regulat 38.1 65 0.0022 20.5 4.9 31 84-114 50-87 (233)
102 2gkg_A Response regulator homo 38.1 52 0.0018 18.3 4.3 28 85-112 49-86 (127)
103 3n0r_A Response regulator; sig 38.0 58 0.002 22.2 4.8 41 71-115 195-242 (286)
104 2x0d_A WSAF; GT4 family, trans 38.0 13 0.00044 27.0 1.5 18 1-18 72-89 (413)
105 1wyl_A NEDD9 interacting prote 37.9 12 0.0004 22.4 1.1 15 97-111 69-84 (116)
106 1xhf_A DYE resistance, aerobic 37.7 54 0.0018 18.3 5.0 30 85-114 47-82 (123)
107 3hv2_A Response regulator/HD d 37.6 63 0.0021 19.0 4.8 41 71-115 48-95 (153)
108 3pdi_A Nitrogenase MOFE cofact 37.4 33 0.0011 25.7 3.7 26 84-112 400-425 (483)
109 3u7q_A Nitrogenase molybdenum- 37.1 41 0.0014 25.3 4.1 25 85-112 417-441 (492)
110 3grc_A Sensor protein, kinase; 36.8 60 0.0021 18.6 5.2 32 84-115 49-89 (140)
111 2rdm_A Response regulator rece 36.7 58 0.002 18.4 5.0 31 85-115 50-88 (132)
112 3eq2_A Probable two-component 36.5 50 0.0017 23.4 4.4 32 84-115 48-86 (394)
113 1xvl_A Mn transporter, MNTC pr 36.3 66 0.0023 22.6 4.9 37 70-110 242-280 (321)
114 3pdi_B Nitrogenase MOFE cofact 36.0 67 0.0023 23.8 5.1 34 85-118 238-272 (458)
115 2qv5_A AGR_C_5032P, uncharacte 35.9 73 0.0025 21.9 5.0 39 67-111 141-182 (261)
116 1a04_A Nitrate/nitrite respons 35.5 50 0.0017 20.9 4.0 30 85-114 51-87 (215)
117 3of5_A Dethiobiotin synthetase 35.4 44 0.0015 22.1 3.8 41 69-114 98-148 (228)
118 3gwa_A 3-oxoacyl-(acyl-carrier 34.6 92 0.0031 22.1 5.6 52 58-111 260-312 (365)
119 3q9s_A DNA-binding response re 34.5 78 0.0027 20.8 4.9 43 70-116 70-118 (249)
120 3ot5_A UDP-N-acetylglucosamine 34.3 53 0.0018 23.6 4.3 38 69-113 105-145 (403)
121 3ezw_A Glycerol kinase; glycer 34.3 1.5E+02 0.005 22.3 7.1 60 55-115 373-436 (526)
122 2qgv_A Hydrogenase-1 operon pr 34.0 50 0.0017 20.4 3.6 41 67-114 55-99 (140)
123 3e61_A Putative transcriptiona 33.6 58 0.002 21.4 4.2 30 85-114 64-94 (277)
124 3h79_A Thioredoxin-like protei 33.6 69 0.0024 18.3 4.3 47 67-115 52-101 (127)
125 1zcz_A Bifunctional purine bio 33.6 43 0.0015 25.2 3.6 27 86-112 405-433 (464)
126 3e2i_A Thymidine kinase; Zn-bi 33.6 44 0.0015 22.4 3.5 27 85-112 101-134 (219)
127 3zzm_A Bifunctional purine bio 33.4 42 0.0014 25.7 3.6 26 87-112 465-492 (523)
128 4efi_A 3-oxoacyl-(acyl-carrier 32.9 88 0.003 22.1 5.2 52 59-112 239-291 (354)
129 3h78_A PQS biosynthetic enzyme 32.7 84 0.0029 22.3 5.1 52 59-112 249-301 (359)
130 1byi_A Dethiobiotin synthase; 32.4 93 0.0032 19.8 5.0 43 67-114 95-146 (224)
131 1zgz_A Torcad operon transcrip 32.4 67 0.0023 17.8 4.8 30 85-114 46-81 (122)
132 1qd1_A Formiminotransferase-cy 32.2 29 0.00098 24.9 2.4 16 98-113 111-126 (325)
133 2oqr_A Sensory transduction pr 32.2 70 0.0024 20.4 4.3 32 85-116 48-85 (230)
134 1bhd_A Utrophin; calponin homo 32.1 16 0.00056 21.8 1.1 15 97-111 70-85 (118)
135 1zh2_A KDP operon transcriptio 32.1 61 0.0021 17.9 3.7 29 85-113 45-79 (121)
136 4a1f_A DNAB helicase, replicat 32.1 63 0.0022 23.0 4.3 42 70-113 143-203 (338)
137 4gxt_A A conserved functionall 32.0 35 0.0012 24.7 3.0 38 67-107 223-260 (385)
138 3il3_A 3-oxoacyl-[acyl-carrier 31.6 1.1E+02 0.0038 21.3 5.5 51 59-111 219-270 (323)
139 4ehi_A Bifunctional purine bio 31.5 45 0.0015 25.6 3.5 26 87-112 476-503 (534)
140 2hls_A Protein disulfide oxido 31.3 97 0.0033 20.5 5.0 26 86-113 65-93 (243)
141 3ga4_A Dolichyl-diphosphooligo 31.1 79 0.0027 20.3 4.3 49 66-116 62-113 (178)
142 3l0q_A Xylulose kinase; xlylul 30.8 1.7E+02 0.0059 22.0 8.3 53 59-113 418-474 (554)
143 2xdq_B Light-independent proto 30.8 60 0.0021 24.4 4.2 25 85-112 372-396 (511)
144 2itm_A Xylulose kinase, xylulo 30.7 1.5E+02 0.0052 21.8 6.3 58 55-114 358-419 (484)
145 4e7p_A Response regulator; DNA 30.5 84 0.0029 18.3 5.1 43 69-115 54-103 (150)
146 3c97_A Signal transduction his 30.5 73 0.0025 18.3 3.9 22 84-105 53-76 (140)
147 3c3w_A Two component transcrip 30.2 52 0.0018 21.1 3.4 31 85-115 47-84 (225)
148 1jbe_A Chemotaxis protein CHEY 30.1 76 0.0026 17.7 5.0 21 85-105 49-71 (128)
149 2gwr_A DNA-binding response re 30.1 56 0.0019 21.1 3.6 30 85-114 49-84 (238)
150 3eei_A 5-methylthioadenosine n 30.0 29 0.001 22.8 2.2 30 87-116 171-200 (233)
151 3zzx_A Thioredoxin; oxidoreduc 30.0 79 0.0027 17.8 4.9 28 85-114 51-81 (105)
152 2b4a_A BH3024; flavodoxin-like 29.8 82 0.0028 18.0 4.6 41 70-113 48-95 (138)
153 3ifr_A Carbohydrate kinase, FG 29.7 1.7E+02 0.0059 21.7 7.4 57 55-113 372-432 (508)
154 3cz5_A Two-component response 29.7 87 0.003 18.3 5.3 30 85-114 51-87 (153)
155 3q6o_A Sulfhydryl oxidase 1; p 29.6 1.2E+02 0.004 19.8 5.9 47 67-115 49-98 (244)
156 2lnb_A Z-DNA-binding protein 1 29.5 55 0.0019 18.3 2.8 12 98-109 37-48 (80)
157 3r0j_A Possible two component 29.3 83 0.0028 20.5 4.4 43 70-116 56-105 (250)
158 2nly_A BH1492 protein, diverge 29.2 1E+02 0.0034 21.0 4.7 39 67-111 114-155 (245)
159 3mm4_A Histidine kinase homolo 29.1 89 0.003 19.8 4.4 31 85-115 119-160 (206)
160 2pl1_A Transcriptional regulat 29.0 77 0.0026 17.4 5.1 30 85-114 44-80 (121)
161 2d88_A Protein mical-3; all al 29.0 19 0.00064 21.7 0.9 15 97-111 71-86 (121)
162 3eod_A Protein HNR; response r 28.9 82 0.0028 17.7 4.5 31 84-114 50-87 (130)
163 2y8t_B RON2, rhoptry NECK prot 28.8 48 0.0016 15.0 2.1 11 84-94 13-23 (37)
164 1q57_A DNA primase/helicase; d 28.8 1.1E+02 0.0037 22.7 5.3 29 85-113 354-401 (503)
165 3fgn_A Dethiobiotin synthetase 28.7 89 0.003 21.1 4.4 32 84-115 125-166 (251)
166 3ed3_A Protein disulfide-isome 28.3 1.3E+02 0.0044 20.6 5.3 45 67-116 54-101 (298)
167 3i8b_A Xylulose kinase; strain 28.2 1.9E+02 0.0064 21.7 8.0 59 54-114 395-457 (515)
168 2z5b_A Protein YPL144W, DMP1; 28.2 37 0.0013 21.4 2.2 34 85-118 83-124 (151)
169 2jba_A Phosphate regulon trans 28.0 60 0.002 18.1 3.1 31 85-115 46-85 (127)
170 1mio_B Nitrogenase molybdenum 28.0 73 0.0025 23.5 4.2 35 84-118 235-271 (458)
171 3dp9_A MTA/SAH nucleosidase; v 27.9 33 0.0011 22.5 2.1 30 87-116 168-197 (231)
172 3ktc_A Xylose isomerase; putat 27.8 38 0.0013 23.5 2.5 18 98-115 112-129 (333)
173 3hzh_A Chemotaxis response reg 27.7 98 0.0034 18.3 4.7 45 69-115 69-120 (157)
174 3s21_A 3-oxoacyl-[ACP] synthas 27.7 1.1E+02 0.0039 21.3 5.0 47 64-112 246-293 (345)
175 3i42_A Response regulator rece 27.7 80 0.0027 17.7 3.7 31 84-114 46-85 (127)
176 2qv0_A Protein MRKE; structura 27.6 91 0.0031 17.8 5.2 21 85-105 55-77 (143)
177 3nhm_A Response regulator; pro 27.4 88 0.003 17.6 5.2 30 85-114 47-85 (133)
178 3vot_A L-amino acid ligase, BL 27.3 55 0.0019 23.5 3.4 25 85-109 75-101 (425)
179 3kkj_A Amine oxidase, flavin-c 27.2 13 0.00045 23.7 0.0 13 2-14 19-31 (336)
180 2ayx_A Sensor kinase protein R 27.2 83 0.0029 20.7 4.1 41 71-115 163-210 (254)
181 1t1j_A Hypothetical protein; s 27.2 27 0.00094 21.3 1.5 17 99-115 104-120 (125)
182 1wjo_A T-plastin; CH domain, a 27.0 22 0.00076 21.7 1.0 14 98-111 77-90 (124)
183 1tjy_A Sugar transport protein 27.0 1.3E+02 0.0043 20.4 5.1 30 85-114 60-93 (316)
184 2wqd_A Phosphoenolpyruvate-pro 27.0 74 0.0025 24.5 4.1 26 86-111 178-205 (572)
185 1vi6_A 30S ribosomal protein S 26.8 62 0.0021 21.5 3.2 29 87-115 118-147 (208)
186 3aek_B Light-independent proto 26.8 71 0.0024 24.2 4.0 24 85-111 349-372 (525)
187 2hwg_A Phosphoenolpyruvate-pro 26.6 76 0.0026 24.5 4.1 26 86-111 176-203 (575)
188 1g8m_A Aicar transformylase-IM 26.6 46 0.0016 25.9 2.8 27 86-112 534-562 (593)
189 2dj0_A Thioredoxin-related tra 26.6 99 0.0034 17.9 4.2 28 85-114 59-95 (137)
190 2qsj_A DNA-binding response re 26.5 95 0.0032 18.1 4.0 30 85-114 50-86 (154)
191 3oit_A OS07G0271500 protein; t 26.5 84 0.0029 22.6 4.2 42 66-109 100-146 (387)
192 1i3c_A Response regulator RCP1 26.5 1E+02 0.0035 18.0 5.1 31 85-115 61-100 (149)
193 3q0i_A Methionyl-tRNA formyltr 26.4 1E+02 0.0036 21.7 4.6 28 84-111 31-68 (318)
194 1wyq_A Spectrin beta chain, br 26.4 20 0.00069 21.8 0.8 16 96-111 68-84 (127)
195 3o4v_A MTA/SAH nucleosidase; m 26.1 38 0.0013 22.3 2.1 30 87-116 169-198 (234)
196 1a0c_A Xylose isomerase; ketol 26.0 43 0.0015 24.8 2.6 20 97-116 171-190 (438)
197 2bw0_A 10-FTHFDH, 10-formyltet 26.0 1.2E+02 0.0041 21.4 4.9 30 84-113 46-79 (329)
198 3bch_A 40S ribosomal protein S 25.9 64 0.0022 22.2 3.2 31 85-115 151-183 (253)
199 3h5i_A Response regulator/sens 25.9 1E+02 0.0034 17.7 5.1 32 84-115 49-87 (140)
200 3a5r_A Benzalacetone synthase; 25.9 91 0.0031 22.3 4.3 42 66-109 102-148 (387)
201 3kht_A Response regulator; PSI 25.9 1E+02 0.0034 17.7 4.0 31 84-114 50-89 (144)
202 3s3l_A CERJ; acyltransferase, 25.7 53 0.0018 23.3 3.0 47 64-112 238-285 (357)
203 3bzy_B ESCU; auto cleavage pro 25.5 43 0.0015 18.8 2.0 27 85-111 19-45 (83)
204 3ll3_A Gluconate kinase; xylul 25.5 2.1E+02 0.0072 21.3 7.9 57 55-113 365-425 (504)
205 3luf_A Two-component system re 25.4 1.5E+02 0.0051 19.6 5.5 31 85-115 169-208 (259)
206 2etv_A Iron(III) ABC transport 25.4 99 0.0034 21.6 4.3 30 85-114 96-126 (346)
207 3bre_A Probable two-component 25.2 95 0.0032 21.4 4.2 31 85-115 63-102 (358)
208 3hz4_A Thioredoxin; NYSGXRC, P 25.1 1.1E+02 0.0037 17.9 5.0 39 68-113 44-85 (140)
209 2z3x_A SAsp, small, acid-solub 25.1 31 0.0011 18.5 1.2 11 99-109 17-27 (63)
210 3eul_A Possible nitrate/nitrit 24.8 1.1E+02 0.0037 17.8 4.2 41 70-114 50-97 (152)
211 2p0u_A Stilbenecarboxylate syn 24.7 1.8E+02 0.0061 21.0 5.7 42 66-109 124-170 (413)
212 4dfe_A 3-oxoacyl-[acyl-carrier 24.6 1.5E+02 0.005 20.6 5.1 48 62-111 232-280 (333)
213 1dz3_A Stage 0 sporulation pro 24.4 73 0.0025 18.0 3.0 20 85-104 48-69 (130)
214 1ee0_A 2-pyrone synthase; poly 24.3 1E+02 0.0035 22.2 4.3 42 66-109 111-157 (402)
215 1mvo_A PHOP response regulator 24.3 1E+02 0.0036 17.3 4.5 12 85-96 47-58 (136)
216 3eeq_A Putative cobalamin bios 24.0 1.5E+02 0.0053 21.1 5.1 42 69-114 228-269 (336)
217 1s8n_A Putative antiterminator 24.0 1.2E+02 0.004 18.9 4.2 31 85-115 58-94 (205)
218 2heo_A Z-DNA binding protein 1 23.9 31 0.0011 18.1 1.2 12 98-109 28-39 (67)
219 2uyt_A Rhamnulokinase; rhamnos 23.7 2.1E+02 0.0073 21.0 6.0 55 57-112 366-424 (489)
220 1nd9_A Translation initiation 23.7 33 0.0011 16.4 1.1 11 99-109 6-16 (49)
221 2x0s_A Pyruvate phosphate diki 23.7 58 0.002 26.7 3.1 26 86-111 470-497 (913)
222 3aek_A Light-independent proto 23.6 40 0.0014 24.8 2.0 32 85-117 230-262 (437)
223 1fmt_A Methionyl-tRNA FMet for 23.3 1.3E+02 0.0045 21.0 4.6 28 84-111 27-64 (314)
224 3bh0_A DNAB-like replicative h 23.3 1.7E+02 0.0058 20.1 5.2 29 85-113 179-228 (315)
225 3ksm_A ABC-type sugar transpor 23.2 1.1E+02 0.0037 19.8 4.1 29 86-114 60-92 (276)
226 2l57_A Uncharacterized protein 23.2 1.1E+02 0.0038 17.3 5.3 41 69-114 47-90 (126)
227 1xes_A Dihydropinosylvin synth 23.1 1.1E+02 0.0037 22.2 4.3 41 67-109 130-175 (413)
228 2zkq_b 40S ribosomal protein S 23.1 75 0.0026 22.4 3.2 30 86-115 119-150 (295)
229 4h08_A Putative hydrolase; GDS 23.1 1.4E+02 0.0048 18.4 4.6 19 96-114 143-161 (200)
230 4hn9_A Iron complex transport 23.0 87 0.003 21.7 3.7 31 85-115 116-146 (335)
231 2av4_A Thioredoxin-like protei 22.9 50 0.0017 21.1 2.1 41 66-113 59-102 (160)
232 3bgw_A DNAB-like replicative h 22.9 1.2E+02 0.0041 22.3 4.5 29 85-113 308-357 (444)
233 3aam_A Endonuclease IV, endoiv 22.6 53 0.0018 21.7 2.4 20 97-116 92-111 (270)
234 1bxb_A Xylose isomerase; xylos 22.5 53 0.0018 23.5 2.5 19 97-115 120-138 (387)
235 1w25_A Stalked-cell differenti 22.4 1.1E+02 0.0037 22.0 4.2 31 85-115 45-84 (459)
236 3jte_A Response regulator rece 22.4 1.2E+02 0.0041 17.3 5.2 31 84-114 48-85 (143)
237 4g9i_A Hydrogenase maturation 22.3 74 0.0025 25.5 3.4 27 85-111 452-483 (772)
238 2vt1_B Surface presentation of 22.3 53 0.0018 18.9 2.0 27 85-111 19-45 (93)
239 2vyc_A Biodegradative arginine 22.3 1.4E+02 0.0048 23.7 5.0 44 70-116 41-95 (755)
240 1i88_A CHS2, chalcone synthase 22.2 1.6E+02 0.0054 21.0 5.0 42 66-109 106-152 (389)
241 3uvt_A Thioredoxin domain-cont 22.1 78 0.0027 17.2 2.8 28 85-114 56-86 (111)
242 1xim_A D-xylose isomerase; iso 21.9 55 0.0019 23.4 2.5 19 97-115 120-138 (393)
243 1mio_A Nitrogenase molybdenum 21.9 1E+02 0.0035 23.5 4.0 32 70-111 448-479 (533)
244 3p2a_A Thioredoxin 2, putative 21.9 1.3E+02 0.0045 17.6 4.9 41 67-114 74-117 (148)
245 2d87_A Smoothelin splice isofo 21.8 33 0.0011 20.9 1.1 14 97-110 69-83 (128)
246 2p3r_A Glycerol kinase; glycer 21.8 2.5E+02 0.0086 20.9 7.1 58 55-113 372-433 (510)
247 3mfq_A TROA, high-affinity zin 21.8 1.4E+02 0.0049 20.4 4.5 29 85-113 212-245 (282)
248 2x3e_A 3-oxoacyl-[acyl-carrier 21.7 1.9E+02 0.0064 19.9 5.2 44 64-109 224-268 (331)
249 3ujp_A Mn transporter subunit; 21.6 85 0.0029 22.0 3.3 38 69-110 227-266 (307)
250 3j20_B 30S ribosomal protein S 21.6 90 0.0031 20.6 3.2 30 86-115 112-143 (202)
251 1toa_A Tromp-1, protein (perip 21.4 1.3E+02 0.0045 20.9 4.3 27 84-110 245-278 (313)
252 3c01_E Surface presentation of 21.4 56 0.0019 19.0 2.0 26 86-111 20-45 (98)
253 1qbj_A Protein (double-strande 21.4 37 0.0013 18.8 1.2 12 98-109 30-41 (81)
254 2d3m_A Pentaketide chromone sy 21.4 1.7E+02 0.0057 21.1 5.0 42 66-109 119-165 (406)
255 4dad_A Putative pilus assembly 21.4 1.2E+02 0.004 17.5 3.6 31 85-115 67-104 (146)
256 3rot_A ABC sugar transporter, 21.3 1.8E+02 0.0063 19.2 5.7 30 85-114 61-94 (297)
257 2r6a_A DNAB helicase, replicat 21.3 1.6E+02 0.0054 21.5 4.9 41 70-113 301-361 (454)
258 3bl6_A 5'-methylthioadenosine 21.3 53 0.0018 21.4 2.1 29 87-115 168-196 (230)
259 3f3q_A Thioredoxin-1; His TAG, 21.2 1.2E+02 0.004 16.8 4.7 28 85-114 55-85 (109)
260 3m9w_A D-xylose-binding peripl 21.1 1.5E+02 0.0052 19.7 4.5 30 85-114 58-91 (313)
261 3t7y_A YOP proteins translocat 21.0 58 0.002 18.9 2.0 20 92-111 41-60 (97)
262 3lua_A Response regulator rece 21.0 85 0.0029 18.0 2.9 12 85-96 50-61 (140)
263 3t8y_A CHEB, chemotaxis respon 20.9 1.4E+02 0.0049 17.7 4.3 42 69-114 59-106 (164)
264 3tqq_A Methionyl-tRNA formyltr 20.9 1.4E+02 0.0048 20.9 4.3 28 84-111 26-63 (314)
265 1a8l_A Protein disulfide oxido 20.8 1.7E+02 0.0058 18.5 5.7 30 84-113 53-85 (226)
266 3g25_A Glycerol kinase; IDP007 20.8 2.6E+02 0.0089 20.7 7.5 58 55-113 375-436 (501)
267 3cg4_A Response regulator rece 20.8 1.3E+02 0.0044 17.1 4.3 40 71-114 41-89 (142)
268 3cnb_A DNA-binding response re 20.8 1.3E+02 0.0043 17.0 3.7 12 85-96 54-65 (143)
269 2xdq_A Light-independent proto 20.7 62 0.0021 23.8 2.6 34 85-118 243-277 (460)
270 1oyi_A Double-stranded RNA-bin 20.5 37 0.0013 19.1 1.0 13 97-109 32-44 (82)
271 2bln_A Protein YFBG; transfera 20.5 1.6E+02 0.0054 20.5 4.5 30 84-113 24-60 (305)
272 2f9i_B Acetyl-coenzyme A carbo 20.5 58 0.002 22.7 2.2 33 84-116 121-166 (285)
273 4bc3_A Xylulose kinase; transf 20.3 2.8E+02 0.0095 20.8 6.4 58 55-114 406-467 (538)
274 1zos_A 5'-methylthioadenosine 20.2 58 0.002 21.2 2.2 29 87-115 167-195 (230)
275 1qtw_A Endonuclease IV; DNA re 20.2 64 0.0022 21.4 2.4 19 98-116 94-112 (285)
276 1qgu_B Protein (nitrogenase mo 20.1 1.4E+02 0.0048 22.5 4.4 25 85-112 434-465 (519)
277 2j48_A Two-component sensor ki 20.1 1.2E+02 0.0039 16.3 3.9 12 85-96 45-56 (119)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=99.93 E-value=7.3e-26 Score=169.89 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=91.5
Q ss_pred CcccccCC--CEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-ccccHHHHHHHHHHHchHHHHHHHHHh
Q 039753 1 SQWLVKHG--FTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-DRSELGKLTESLMRVMPRKREELIKDS 77 (125)
Q Consensus 1 a~~L~~~G--~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l 77 (125)
||+|++|| ++|||++|+.++.++.+... ...++|+|+.+|+|+|++. ...+....+..+.+.+...+++.++++
T Consensus 34 ak~L~~~g~~~~vT~~~t~~~~~~~~~~~~---~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (454)
T 3hbf_A 34 VKKIATEAPKVTFSFFCTTTTNDTLFSRSN---EFLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEA 110 (454)
T ss_dssp HHHHHHHCTTSEEEEEECHHHHHHSCSSSS---CCCTTEEEEECCCCCCTTCCCCSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEEeCHHHHHhhhcccc---cCCCCceEEecCCCCCCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999 99999999988877644321 1135799999999998763 222333344444444555677777665
Q ss_pred hhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhhC
Q 039753 78 NARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNCI 125 (125)
Q Consensus 78 ~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~h 125 (125)
..+.+ ++|+|||+|+|++|+.+||+|+|||+++|||++|+++++++|
T Consensus 111 ~~~~~-~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~ 157 (454)
T 3hbf_A 111 VAETG-KNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVY 157 (454)
T ss_dssp HHHHC-CCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHT
T ss_pred HhhcC-CCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHh
Confidence 33222 589999999999999999999999999999999999999876
No 2
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=99.82 E-value=5e-20 Score=138.89 Aligned_cols=124 Identities=26% Similarity=0.394 Sum_probs=89.1
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhcc-ccCCCceEEeecCCCCCCc---c-cccHHHHHHHHHHHchHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKN-YVLDQIHLISIPDGLETWE---D-RSELGKLTESLMRVMPRKREELIK 75 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~ 75 (125)
||+|++||++|||++|+.++.++.+...... ...++++|+.+|+++|+.+ . ..+...++..+.+.+.+.++++++
T Consensus 29 a~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 108 (482)
T 2pq6_A 29 AKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLT 108 (482)
T ss_dssp HHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECCCCC---------CCHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECCCCCCCcccccCcchhHHHHHHHHHHHhhHHHHHHHH
Confidence 5789999999999999988776543311000 0014799999998887521 1 234555565555678889999999
Q ss_pred HhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 76 DSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 76 ~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
++..+.+..+++|||+|++++|+.++|+++|||++.||+++++.+..++
T Consensus 109 ~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~ 157 (482)
T 2pq6_A 109 RLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVM 157 (482)
T ss_dssp HHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHT
T ss_pred HHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHH
Confidence 8864210157999999999999999999999999999999998877654
No 3
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=99.75 E-value=8.1e-18 Score=126.40 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=83.3
Q ss_pred CcccccC--CCEEEEEeCccchHH-HhhhhhhccccCCCceEEeecCC-CCCCcccccHHHHHHHHHHHchHHHHHHHHH
Q 039753 1 SQWLVKH--GFTITLSNTEYNHRQ-VMNILEEKNYVLDQIHLISIPDG-LETWEDRSELGKLTESLMRVMPRKREELIKD 76 (125)
Q Consensus 1 a~~L~~~--G~~VT~v~t~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (125)
||+|++| |++|||++|+.++.+ +.+.........++++|+.+|++ +|..+...+....+......+...+++++++
T Consensus 30 a~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 109 (463)
T 2acv_A 30 AKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKT 109 (463)
T ss_dssp HHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCCCCCcccccCCccHHHHHHHHhhhHHHHHHHHh
Confidence 5789998 999999999986421 11110000011257999999986 4432211111111333335677789999988
Q ss_pred hhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 77 SNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 77 l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
+ . + .+++|||+|++++|+.++|+++|||+++||+++++.+++++
T Consensus 110 ~-~-~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~ 153 (463)
T 2acv_A 110 I-L-S--NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLML 153 (463)
T ss_dssp H-C-C--TTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHH
T ss_pred c-c-C--CCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHH
Confidence 6 2 1 58999999999999999999999999999999999887664
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=99.75 E-value=2.9e-18 Score=128.61 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=81.3
Q ss_pred CcccccC--CCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-ccccHHHHHHHHHHHchHHHHHHHHHh
Q 039753 1 SQWLVKH--GFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-DRSELGKLTESLMRVMPRKREELIKDS 77 (125)
Q Consensus 1 a~~L~~~--G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l 77 (125)
||+|++| |+.|||++|+.+..++.+.... ...++|+|+.+|+++|++. ...+....+..+.+.+...++++++++
T Consensus 28 a~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~--~~~~~i~~~~i~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 105 (456)
T 2c1x_A 28 VRRLAAAAPHAVFSFFSTSQSNASIFHDSMH--TMQCNIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMA 105 (456)
T ss_dssp HHHHHHHCTTSEEEEEECHHHHHHHC---------CTTEEEEECCCCCCTTCCCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCeEEEEEeCchhHHHhhccccc--cCCCceEEEeCCCCCCCcccccCChHHHHHHHHHHhHHHHHHHHHHH
Confidence 5788887 5889999998776655432110 1124799999999887652 111222223333333345566666654
Q ss_pred hhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 78 NARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 78 ~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
..+.+ .+++|||+|++++|+.++|+++|||++.||+++++.++.++
T Consensus 106 ~~~~~-~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~ 151 (456)
T 2c1x_A 106 VAETG-RPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHV 151 (456)
T ss_dssp HHHHT-CCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHH
T ss_pred HhccC-CCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHh
Confidence 32211 58999999999999999999999999999999998877654
No 5
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=99.70 E-value=6e-17 Score=122.20 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=82.7
Q ss_pred CcccccC-CCEEEEEeCccch--HHHhhhhhhccccCCCceEEeecCCCCCC-cccccHHHHHHHHHHHchHHHHHHHHH
Q 039753 1 SQWLVKH-GFTITLSNTEYNH--RQVMNILEEKNYVLDQIHLISIPDGLETW-EDRSELGKLTESLMRVMPRKREELIKD 76 (125)
Q Consensus 1 a~~L~~~-G~~VT~v~t~~~~--~~~~~~~~~~~~~~~~i~~~~lp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (125)
||+|++| |++|||++++.++ ..+..... ...++++|+.+|++..++ ....+....+......+.+.+++++++
T Consensus 27 a~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 103 (480)
T 2vch_A 27 AKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD---SLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDS 103 (480)
T ss_dssp HHHHHHHHCCEEEEEECCSSSCC-CHHHHHC----CCTTEEEEECCCCCCTTSCTTCCHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEECCCcchhhhhhhhcc---ccCCCceEEEcCCCCCCCCCCchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 5789988 9999999998752 22222100 112479999999753222 111233333333445667889999988
Q ss_pred hhhcCCCCCe-eEEEecCCcccHHHHHHHhCCceEEEcchhHHHHHhhh
Q 039753 77 SNARETHENI-TYVIADGNVEQGIKVAEKLNIQSAAFWPAAAAVLALNC 124 (125)
Q Consensus 77 l~~~~~~~~~-~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 124 (125)
+... .++ +|||+|++++|+.++|+++|||++.||+++++.+++++
T Consensus 104 ~~~~---~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~ 149 (480)
T 2vch_A 104 FVEG---GRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFL 149 (480)
T ss_dssp HHHT---TCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHH
T ss_pred hccC---CCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHH
Confidence 7422 467 99999999999999999999999999999998877764
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.43 E-value=9.1e-13 Score=97.08 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=70.5
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-c----cccHHHHHHHHHHHchHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-D----RSELGKLTESLMRVMPRKREELIK 75 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~l~ 75 (125)
|++|.++|++||+++++.+...+... +++|+.+|++++.+. . ..+....+..+.+......+++.+
T Consensus 33 a~~L~~~Gh~V~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (424)
T 2iya_A 33 VQELVARGHRVSYAITDEFAAQVKAA---------GATPVVYDSILPKESNPEESWPEDQESAMGLFLDEAVRVLPQLED 103 (424)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHHHH---------TCEEEECCCCSCCTTCTTCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEeCHHHHHHHHhC---------CCEEEecCccccccccchhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998876554332 688998887654321 1 123222332222222233344444
Q ss_pred HhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhH
Q 039753 76 DSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 76 ~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a 117 (125)
.+.. .+|+|||+|.++.|+..+|+++|||.+.|++.++
T Consensus 104 ~l~~----~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~ 141 (424)
T 2iya_A 104 AYAD----DRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFV 141 (424)
T ss_dssp HTTT----SCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCC
T ss_pred HHhc----cCCCEEEEcCcccHHHHHHHhcCCCEEEEecccc
Confidence 3332 4789999999999999999999999999998765
No 7
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.06 E-value=3.2e-10 Score=83.48 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=64.8
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCC-cc-cccHHHHHHHHHHHchHHHHHHHHHhh
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETW-ED-RSELGKLTESLMRVMPRKREELIKDSN 78 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~ 78 (125)
|+.|.+||++|||++++.....+.. .+++|+.+|++..+. .. .......+..+ +...++++++++.
T Consensus 21 a~~L~~~Gh~V~~~~~~~~~~~v~~---------~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 88 (415)
T 1iir_A 21 AVRVRDLGADVRMCAPPDCAERLAE---------VGVPHVPVGPSARAPIQRAKPLTAEDVRRF---TTEAIATQFDEIP 88 (415)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHHH---------TTCCEEECCC-------CCSCCCHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEcCHHHHHHHHH---------cCCeeeeCCCCHHHHhhcccccchHHHHHH---HHHHHHHHHHHHH
Confidence 4678889999999999875543322 268999888643211 01 11111111111 1222344444443
Q ss_pred hcCCCCCeeEEEecC-Cccc--HHHHHHHhCCceEEEcchhHH
Q 039753 79 ARETHENITYVIADG-NVEQ--GIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 79 ~~~~~~~~~~iI~D~-~~~w--~~~vA~~lgIP~~~f~t~~a~ 118 (125)
... .+|+|||+|. +..| +..+|+++|||.+.+++.++.
T Consensus 89 ~~~--~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~ 129 (415)
T 1iir_A 89 AAA--EGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSY 129 (415)
T ss_dssp HHT--TTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGG
T ss_pred HHh--cCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCc
Confidence 211 4799999998 7789 999999999999999988743
No 8
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.01 E-value=2.4e-09 Score=78.73 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=66.5
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-c----cccHHHHHHHHHHHchHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-D----RSELGKLTESLMRVMPRKREELIK 75 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~l~ 75 (125)
++.|.++|++||+++++.....+.. .+++++.+|...+.+. . ..+....+..+.......+.++.+
T Consensus 28 a~~L~~~G~~V~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (430)
T 2iyf_A 28 IRELVARGHRVTYAIPPVFADKVAA---------TGPRPVLYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQLAD 98 (430)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHHT---------TSCEEEECCCCSCCTTSCGGGGCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEeCHHHHHHHHh---------CCCEEEEcCCcCccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999998876443322 2688888886543221 1 112222222222222223344444
Q ss_pred HhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhH
Q 039753 76 DSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 76 ~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a 117 (125)
.+.. .+|++||+|.+..|+..+|+++|||.+.+++.++
T Consensus 99 ~l~~----~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (430)
T 2iyf_A 99 AYAD----DIPDLVLHDITSYPARVLARRWGVPAVSLSPNLV 136 (430)
T ss_dssp HHTT----SCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCC
T ss_pred Hhhc----cCCCEEEECCccHHHHHHHHHcCCCEEEEecccc
Confidence 3332 4789999999888999999999999999997653
No 9
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=98.91 E-value=5.5e-09 Score=75.80 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=66.1
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-----ccccHHHHHHH-HHHHchHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-----DRSELGKLTES-LMRVMPRKREELI 74 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~l 74 (125)
|+.|.++|++||+++++.....+.. .+++++.++..++... ...+....+.. +.......++++.
T Consensus 25 a~~L~~~GheV~v~~~~~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (402)
T 3ia7_A 25 VSELARRGHRITYVTTPLFADEVKA---------AGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILRAAE 95 (402)
T ss_dssp HHHHHHTTCEEEEEECHHHHHHHHH---------TTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEEcCHHHHHHHHH---------cCCEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999998766554432 2688888875332110 11222222222 2222333344544
Q ss_pred HHhhhcCCCCCeeEEEec-CCcccHHHHHHHhCCceEEEcchh
Q 039753 75 KDSNARETHENITYVIAD-GNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 75 ~~l~~~~~~~~~~~iI~D-~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
+.+.. .+|++||+| .+..|+..+|+++|||.+.+.+..
T Consensus 96 ~~l~~----~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~ 134 (402)
T 3ia7_A 96 EALGD----NPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGF 134 (402)
T ss_dssp HHHTT----CCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred HHHhc----cCCCEEEECchHHHHHHHHHHhhCCCEEEEeccc
Confidence 44433 479999999 888899999999999999987443
No 10
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.82 E-value=1.1e-08 Score=75.09 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=63.0
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCc-c--cccHHHHHHHHHHHchHHHHHHHHHh
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWE-D--RSELGKLTESLMRVMPRKREELIKDS 77 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~~l 77 (125)
|+.|.++|++|||++++...+.+... +++++.++....... . .......+..+ ......++++.+
T Consensus 21 a~~L~~~Gh~V~~~~~~~~~~~v~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l 88 (416)
T 1rrv_A 21 ADRLKALGVQTRMCAPPAAEERLAEV---------GVPHVPVGLPQHMMLQEGMPPPPPEEEQRL---AAMTVEMQFDAV 88 (416)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHHHH---------TCCEEECSCCGGGCCCTTSCCCCHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEeCHHHHHHHHHc---------CCeeeecCCCHHHHHhhccccchhHHHHHH---HHHHHHHHHHHH
Confidence 46788899999999998755444322 688888875421100 0 01111111111 112234444444
Q ss_pred hhcCCCCCeeEEEecC-Cccc--HHHHHHHhCCceEEEcchhH
Q 039753 78 NARETHENITYVIADG-NVEQ--GIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 78 ~~~~~~~~~~~iI~D~-~~~w--~~~vA~~lgIP~~~f~t~~a 117 (125)
.... .+|+|||+|. +..| +..+|+++|||.+.+++.++
T Consensus 89 ~~~~--~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~ 129 (416)
T 1rrv_A 89 PGAA--EGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPV 129 (416)
T ss_dssp HHHT--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGG
T ss_pred HHHh--cCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3111 4799999997 4556 89999999999999988764
No 11
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=98.80 E-value=1.6e-08 Score=73.91 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=65.4
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcc-----cccHHHHHHH-HHHHchHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWED-----RSELGKLTES-LMRVMPRKREELI 74 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~l 74 (125)
|+.|.++|++|++++++...+.+.. .+++++.++..++.... ..+....+.. +.......++++.
T Consensus 41 a~~L~~~Gh~V~v~~~~~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (415)
T 3rsc_A 41 VTELVRRGHRVSYVTAGGFAEPVRA---------AGATVVPYQSEIIDADAAEVFGSDDLGVRPHLMYLRENVSVLRATA 111 (415)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHHH---------TTCEEEECCCSTTTCCHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeCHHHHHHHHh---------cCCEEEeccccccccccchhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999998776655432 26889888865442210 0011111111 2222223344444
Q ss_pred HHhhhcCCCCCeeEEEec-CCcccHHHHHHHhCCceEEEcchh
Q 039753 75 KDSNARETHENITYVIAD-GNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 75 ~~l~~~~~~~~~~~iI~D-~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
+.+.. .+|++||+| .+..|+..+|+++|||.+.+.+..
T Consensus 112 ~~l~~----~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~ 150 (415)
T 3rsc_A 112 EALDG----DVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAF 150 (415)
T ss_dssp HHHSS----SCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHhc----cCCCEEEECchhhhHHHHHHHHhCCCEEEEEecc
Confidence 44432 478999999 788899999999999999987543
No 12
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.64 E-value=5.5e-08 Score=70.59 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=60.2
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCC-------CC----c---cc-ccHHHHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLE-------TW----E---DR-SELGKLTESLMRV 65 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-------~~----~---~~-~~~~~~~~~~~~~ 65 (125)
|+.|++||++|||++++....... .++.++.+.++.. .. . .. .....+...+...
T Consensus 43 A~~L~~rGh~Vt~~t~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (400)
T 4amg_A 43 AQALRALGHEVRYATGGDIRAVAE----------AGLCAVDVSPGVNYAKLFVPDDTDVTDPMHSEGLGEGFFAEMFARV 112 (400)
T ss_dssp HHHHHHTTCEEEEEECSSTHHHHT----------TTCEEEESSTTCCSHHHHSCCC------------CHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeCcchhhHHh----------cCCeeEecCCchhHhhhccccccccccccchhhhhHHHHHHHHHHH
Confidence 478899999999999876543221 1345555432211 00 0 00 0111111111112
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchhH
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a 117 (125)
....+.++++.+.. .+|++||+|.+..|+..+|+++|||.+.+++..+
T Consensus 113 ~~~~~~~l~~~~~~----~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~ 160 (400)
T 4amg_A 113 SAVAVDGALRTARS----WRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPA 160 (400)
T ss_dssp HHHHHHHHHHHHHH----HCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTT
T ss_pred HHHHHHHHHHHHHh----cCCCEEEECcchHHHHHHHHHcCCCceeeccccc
Confidence 22233444443332 3689999999999999999999999999876653
No 13
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.58 E-value=2.6e-07 Score=66.86 Aligned_cols=102 Identities=9% Similarity=-0.051 Sum_probs=60.8
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCC------------CCCcccc-cHHHHH-HH-HHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGL------------ETWEDRS-ELGKLT-ES-LMRV 65 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~------------~~~~~~~-~~~~~~-~~-~~~~ 65 (125)
|+.|.++|++||+++++...+.+.. .+++++.++... |...+.. .....+ .. +...
T Consensus 21 a~~L~~~Gh~V~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (384)
T 2p6p_A 21 ATAARNAGHQVVMAANQDMGPVVTG---------VGLPAVATTDLPIRHFITTDREGRPEAIPSDPVAQARFTGRWFARM 91 (384)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHHH---------TTCCEEESCSSCHHHHHHBCTTSCBCCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeCHHHHHHHHh---------CCCEEEEeCCcchHHHHhhhcccCccccCcchHHHHHHHHHHHHhh
Confidence 3578889999999998765433322 257787776432 1000010 111111 11 1111
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
....++++.+.+.. .+|++||+|.+..|+..+|+++|||.+.++..
T Consensus 92 ~~~~~~~l~~~l~~----~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~ 137 (384)
T 2p6p_A 92 AASSLPRMLDFSRA----WRPDLIVGGTMSYVAPLLALHLGVPHARQTWD 137 (384)
T ss_dssp HHHHHHHHHHHHHH----HCCSEEEEETTCTHHHHHHHHHTCCEEEECCS
T ss_pred HHHHHHHHHHHHhc----cCCcEEEECcchhhHHHHHHhcCCCEEEeccC
Confidence 12234444444332 36899999998889999999999999988754
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.46 E-value=8.2e-07 Score=65.67 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=63.2
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCC-Cc--c------------------cc--cHH-
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLET-WE--D------------------RS--ELG- 56 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~--~------------------~~--~~~- 56 (125)
|+.|.++|++||+++++...+.+.. .+++|+.++...+. +. . .. ...
T Consensus 41 a~~L~~~GheV~~~~~~~~~~~v~~---------~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (441)
T 2yjn_A 41 AWAFRAAGHEVRVVASPALTEDITA---------AGLTAVPVGTDVDLVDFMTHAGHDIIDYVRSLDFSERDPATLTWEH 111 (441)
T ss_dssp HHHHHHTTCEEEEEECGGGHHHHHT---------TTCCEEECSCCCCHHHHHHHTTHHHHHHHTTCCCTTCCGGGGSHHH
T ss_pred HHHHHHCCCeEEEEeCchhHHHHHh---------CCCceeecCCccchHHHhhhhhcccccccccccccccCcchhhhhh
Confidence 4678889999999998765433322 36889888754210 00 0 00 010
Q ss_pred --HHHHHHHHH----ch-H-HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 57 --KLTESLMRV----MP-R-KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 57 --~~~~~~~~~----~~-~-~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.....+.+. +. . .+.++++.+.+ .+|++||+|.+..|+..+|+++|||.+.+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~~~ 175 (441)
T 2yjn_A 112 LLGMQTVLTPTFYALMSPDTLIEGMVSFCRK----WRPDLVIWEPLTFAAPIAAAVTGTPHARLLWGP 175 (441)
T ss_dssp HHHHHHHHHHHTTTTSSCHHHHHHHHHHHHH----HCCSEEEECTTCTHHHHHHHHHTCCEEEECSSC
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHh----cCCCEEEecCcchhHHHHHHHcCCCEEEEecCC
Confidence 001111110 11 2 45555554443 378999999988899999999999999986543
No 15
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=98.39 E-value=3e-06 Score=61.70 Aligned_cols=98 Identities=10% Similarity=0.139 Sum_probs=60.1
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCC----------------------CCcccccHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLE----------------------TWEDRSELGKL 58 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----------------------~~~~~~~~~~~ 58 (125)
++.|.++|++|+++++ .....+.. .+++++.++.+.. +..........
T Consensus 41 a~~L~~~GheV~v~~~-~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (398)
T 3oti_A 41 AWGFRTAGHDVLIAVA-EHADRAAA---------AGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQ 110 (398)
T ss_dssp HHHHHHTTCEEEEEES-SCHHHHHT---------TTCEEEESSTTCCHHHHHHHHHHHCHHHHHTGGGSCCCSGGGGHHH
T ss_pred HHHHHHCCCEEEEecc-chHHHHHh---------CCCeeEecCCccCHHHHhhhcccCCccccccccCChhhhHHHHHHH
Confidence 3567889999999998 43333322 3688888874310 00011111222
Q ss_pred HHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 59 TESLMRVMPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
+......+...+.+++++ .+|++||+|....++..+|+++|||.+.....
T Consensus 111 ~~~~~~~~~~~l~~~l~~-------~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~ 160 (398)
T 3oti_A 111 IAAVNRPLVDGTMALVDD-------YRPDLVVYEQGATVGLLAADRAGVPAVQRNQS 160 (398)
T ss_dssp HHHHHGGGHHHHHHHHHH-------HCCSEEEEETTCHHHHHHHHHHTCCEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCCEEEECchhhHHHHHHHHcCCCEEEEecc
Confidence 222222333344444443 26899999988888999999999999987654
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=98.18 E-value=9e-06 Score=59.07 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=57.9
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCC---------CCc------ccccHHH-HHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLE---------TWE------DRSELGK-LTESLMR 64 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---------~~~------~~~~~~~-~~~~~~~ 64 (125)
++.|.++|++|++++++.....+.. .+++++.++.... .+. ....... ....+..
T Consensus 36 a~~L~~~GheV~v~~~~~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (398)
T 4fzr_A 36 SWALRAAGHEVLVAASENMGPTVTG---------AGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEKPLLEHIGRGYGR 106 (398)
T ss_dssp HHHHHHTTCEEEEEEEGGGHHHHHH---------TTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEcCHHHHHHHHh---------CCCeeEecCCccchHhhhhhhccCcccccccchhhHHHHHHHHHHH
Confidence 3567889999999987654444332 2577777763100 000 0001111 1111111
Q ss_pred HchHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 65 VMPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 65 ~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
.....++++.+.+.. .+|++||+|....++..+|+++|||.+.+...
T Consensus 107 ~~~~~~~~l~~~~~~----~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~ 153 (398)
T 4fzr_A 107 LVLRMRDEALALAER----WKPDLVLTETYSLTGPLVAATLGIPWIEQSIR 153 (398)
T ss_dssp HHHHHHHHHHHHHHH----HCCSEEEEETTCTHHHHHHHHHTCCEEEECCS
T ss_pred HHHHHHHHHHHHHHh----CCCCEEEECccccHHHHHHHhhCCCEEEeccC
Confidence 112223333333332 36899999998888999999999999987654
No 17
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.16 E-value=1.9e-06 Score=63.21 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=58.0
Q ss_pred CcccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCC--CcccccHHHHHHHHHHHchHHHHHHHHHhh
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLET--WEDRSELGKLTESLMRVMPRKREELIKDSN 78 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 78 (125)
|+.|.++|++|++++++.....+.. .+++++.++..... +............+...+...++++.+..
T Consensus 21 a~~L~~~Gh~V~v~~~~~~~~~v~~---------~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 90 (404)
T 3h4t_A 21 AARLRELGADARMCLPPDYVERCAE---------VGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFDKVPAAI- 90 (404)
T ss_dssp HHHHHHTTCCEEEEECGGGHHHHHH---------TTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCeEEEEeCHHHHHHHHH---------cCCceeecCCCHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3578889999999998765443322 26888888743210 00000000000111111222233333222
Q ss_pred hcCCCCCeeEEEecCCcccH---HHHHHHhCCceEEEcchhH
Q 039753 79 ARETHENITYVIADGNVEQG---IKVAEKLNIQSAAFWPAAA 117 (125)
Q Consensus 79 ~~~~~~~~~~iI~D~~~~w~---~~vA~~lgIP~~~f~t~~a 117 (125)
.+|++||+|....++ ..+|+++|||.+..+.+..
T Consensus 91 -----~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~ 127 (404)
T 3h4t_A 91 -----EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPD 127 (404)
T ss_dssp -----TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGG
T ss_pred -----cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCc
Confidence 258999999776655 7899999999997776654
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=98.10 E-value=1.4e-05 Score=57.77 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=26.8
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
+|++||+|.+..++..+|+++|||.+.+...
T Consensus 114 ~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~ 144 (391)
T 3tsa_A 114 RPSVLLVDVCALIGRVLGGLLDLPVVLHRWG 144 (391)
T ss_dssp CCSEEEEETTCHHHHHHHHHTTCCEEEECCS
T ss_pred CCCEEEeCcchhHHHHHHHHhCCCEEEEecC
Confidence 6899999987778888999999999988543
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=97.93 E-value=4.1e-05 Score=55.59 Aligned_cols=31 Identities=13% Similarity=-0.075 Sum_probs=26.4
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
+|++||+|....++..+|+++|||.+.....
T Consensus 130 ~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~ 160 (412)
T 3otg_A 130 RPDLVVQEISNYGAGLAALKAGIPTICHGVG 160 (412)
T ss_dssp CCSEEEEETTCHHHHHHHHHHTCCEEEECCS
T ss_pred CCCEEEECchhhHHHHHHHHcCCCEEEeccc
Confidence 6899999987777888999999999886544
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=96.58 E-value=0.0091 Score=43.11 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=49.2
Q ss_pred CcccccCCCEEEEEeCccchH-HHhhhhhhccccCCCceEEeecC-CCCCCccc---ccHHHHHHHHHHHchHHHHHHHH
Q 039753 1 SQWLVKHGFTITLSNTEYNHR-QVMNILEEKNYVLDQIHLISIPD-GLETWEDR---SELGKLTESLMRVMPRKREELIK 75 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~-~~~~~~~~~~~~~~~i~~~~lp~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~ 75 (125)
|+.|.++|++|+|++++.... ++... .+++++.+|. +++..... .....++..+. ....+++
T Consensus 23 a~~L~~~g~~V~~vg~~~g~e~~~v~~--------~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ 89 (365)
T 3s2u_A 23 AREFQARGYAVHWLGTPRGIENDLVPK--------AGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLF-----QALRVIR 89 (365)
T ss_dssp HHHHHHTTCEEEEEECSSSTHHHHTGG--------GTCCEEECC--------------CHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHhCCCEEEEEECCchHhhchhhh--------cCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 356778999999998765332 22111 2678888873 33211000 11222222111 1233444
Q ss_pred HhhhcCCCCCeeEEEecCCcc-c-HHHHHHHhCCceEEE
Q 039753 76 DSNARETHENITYVIADGNVE-Q-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 76 ~l~~~~~~~~~~~iI~D~~~~-w-~~~vA~~lgIP~~~f 112 (125)
+. +|++||+|.... + +.-.|+.+|||.++.
T Consensus 90 ~~-------~PDvVi~~g~~~s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 90 QL-------RPVCVLGLGGYVTGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp HH-------CCSEEEECSSSTHHHHHHHHHHTTCCEEEE
T ss_pred hc-------CCCEEEEcCCcchHHHHHHHHHcCCCEEEE
Confidence 43 689999997543 3 445688899999864
No 21
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=94.34 E-value=0.38 Score=33.78 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=48.7
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecC-CCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhc
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPD-GLETWEDRSELGKLTESLMRVMPRKREELIKDSNAR 80 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (125)
+.|.++|+.|++++....... .... ..+++++.++. +++.. .............. ....+.+++++
T Consensus 28 ~~L~~~G~~V~v~~~~~~~~~--~~~~-----~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~~l~~---- 94 (364)
T 1f0k_A 28 HHLMAQGWQVRWLGTADRMEA--DLVP-----KHGIEIDFIRISGLRGK-GIKALIAAPLRIFN-AWRQARAIMKA---- 94 (364)
T ss_dssp HHHHTTTCEEEEEECTTSTHH--HHGG-----GGTCEEEECCCCCCTTC-CHHHHHTCHHHHHH-HHHHHHHHHHH----
T ss_pred HHHHHcCCEEEEEecCCcchh--hhcc-----ccCCceEEecCCccCcC-ccHHHHHHHHHHHH-HHHHHHHHHHh----
Confidence 567788999999987643211 1111 12577777763 22211 10000000000000 11123333333
Q ss_pred CCCCCeeEEEecCCc--ccHHHHHHHhCCceEEEc
Q 039753 81 ETHENITYVIADGNV--EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 81 ~~~~~~~~iI~D~~~--~w~~~vA~~lgIP~~~f~ 113 (125)
.+|++|+++... .++..+|+..|+|.+...
T Consensus 95 ---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 126 (364)
T 1f0k_A 95 ---YKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 126 (364)
T ss_dssp ---HCCSEEEECSSTTHHHHHHHHHHTTCCEEEEE
T ss_pred ---cCCCEEEEeCCcCchHHHHHHHHcCCCEEEEe
Confidence 268999998643 245667888999988653
No 22
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=89.16 E-value=0.81 Score=30.75 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
++.+++......-..++.+||+|---.-..+.|+++|||.+.+-+.
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~ 61 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPK 61 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGG
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChh
Confidence 4555555432211136899999965556889999999999987654
No 23
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=85.14 E-value=1.7 Score=29.12 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=24.1
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
++.+||+|---.-+.+.|+++|||.+.+-.
T Consensus 36 ~I~~Visn~~~a~~l~~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 36 EIVAVFSDKAEAGGLAKAEAAGIATQVFKR 65 (209)
T ss_dssp EEEEEEESCTTCTHHHHHHHTTCCEEECCG
T ss_pred EEEEEEECCcccHHHHHHHHcCCCEEEeCc
Confidence 688999985444568899999999998754
No 24
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=83.90 E-value=2.7 Score=28.03 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
++.+++...+....-.+.+||++-=-.-+.+.|++.|||.+.+-+
T Consensus 14 L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~ 58 (209)
T 1meo_A 14 LQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINH 58 (209)
T ss_dssp HHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECc
Confidence 445555443321014688999998666788999999999988765
No 25
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=82.07 E-value=2.6 Score=28.33 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=24.4
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
.+.+||+|---.-+.+.|+++|||.+.+-.
T Consensus 33 eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~ 62 (215)
T 3tqr_A 33 EIRAVISNRADAYGLKRAQQADIPTHIIPH 62 (215)
T ss_dssp EEEEEEESCTTCHHHHHHHHTTCCEEECCG
T ss_pred EEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 688999986555568899999999998743
No 26
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=81.04 E-value=6 Score=28.08 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=49.8
Q ss_pred CcccccCCCEEEEEeCccchHHHh---------hhhh--hccccCCCceEEeecCCCCCCccc-c-cHHHHHHHHHHHch
Q 039753 1 SQWLVKHGFTITLSNTEYNHRQVM---------NILE--EKNYVLDQIHLISIPDGLETWEDR-S-ELGKLTESLMRVMP 67 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~~~~~~~---------~~~~--~~~~~~~~i~~~~lp~~~~~~~~~-~-~~~~~~~~~~~~~~ 67 (125)
|+.|+.+|+.|+++++......-. .... .......++++..++...-..... . ....+...+. ...
T Consensus 28 a~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 106 (439)
T 3fro_A 28 SEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWDGLIRKAV-TFG 106 (439)
T ss_dssp HHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEEESGGGGCSSTTCSHHHHHHHHHH-HHH
T ss_pred HHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEecchhccccccccCCcchhhhhhH-HHH
Confidence 356788999999998543221100 0000 000012467777776411000000 1 1111111111 122
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcc-c-HHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVE-Q-GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~-w-~~~vA~~lgIP~~~f~ 113 (125)
..+..+++.+.... .+|+.|.+-.... + +.-+++..|+|.+...
T Consensus 107 ~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~ 152 (439)
T 3fro_A 107 RASVLLLNDLLREE--PLPDVVHFHDWHTVFAGALIKKYFKIPAVFTI 152 (439)
T ss_dssp HHHHHHHHHHTTTS--CCCSEEEEESGGGHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHhccC--CCCeEEEecchhhhhhHHHHhhccCCCEEEEe
Confidence 23444555542111 4677777654333 2 4556677899977643
No 27
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=80.73 E-value=2.7 Score=28.26 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=23.8
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
++.+||+|---.-+.+.|+++|||.+.+-.
T Consensus 37 ~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 37 VISCVISNNAEARGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp EEEEEEESCTTCTHHHHHHHTTCCEEECCB
T ss_pred EEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 588999985444478899999999998744
No 28
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=79.33 E-value=3.9 Score=29.30 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=45.6
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHH-hhhc
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKD-SNAR 80 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~ 80 (125)
+.|..+|+.|++++....... .... ....+++++.++..........+....+..+. ..+++. +...
T Consensus 53 ~~L~~~G~~V~v~~~~~~~~~-~~~~----~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 120 (438)
T 3c48_A 53 TELAKQGIEVDIYTRATRPSQ-GEIV----RVAENLRVINIAAGPYEGLSKEELPTQLAAFT-------GGMLSFTRREK 120 (438)
T ss_dssp HHHHHTTCEEEEEEECCCGGG-CSEE----EEETTEEEEEECCSCSSSCCGGGGGGGHHHHH-------HHHHHHHHHHT
T ss_pred HHHHhcCCEEEEEecCCCCCC-cccc----cccCCeEEEEecCCCccccchhHHHHHHHHHH-------HHHHHHHHhcc
Confidence 567778999999986543211 0000 01146788777642111101111111111111 112222 1111
Q ss_pred CCCCCeeEEEecCCc-c-cHHHHHHHhCCceEEEc
Q 039753 81 ETHENITYVIADGNV-E-QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 81 ~~~~~~~~iI~D~~~-~-w~~~vA~~lgIP~~~f~ 113 (125)
..++.|++.... . .+..+++.+|+|.+...
T Consensus 121 ---~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~ 152 (438)
T 3c48_A 121 ---VTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTA 152 (438)
T ss_dssp ---CCCSEEEEEHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ---CCCCEEEeCCccHHHHHHHHHHHcCCCEEEEe
Confidence 237887776533 2 23456778899987654
No 29
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=79.09 E-value=4.5 Score=26.99 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
++.+++.+....-...+.+||++---.-..+.|+++|||.+.+-.
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~ 58 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIA 58 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCG
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCc
Confidence 455555544321003578999986555678999999999988653
No 30
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=78.97 E-value=4.6 Score=26.51 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
...++.++++.++ .+++||.|.. +.+.|+++|+|.+...++-
T Consensus 129 ~e~~~~i~~l~~~----G~~vvVG~~~---~~~~A~~~Gl~~vli~sg~ 170 (196)
T 2q5c_A 129 DEITTLISKVKTE----NIKIVVSGKT---VTDEAIKQGLYGETINSGE 170 (196)
T ss_dssp GGHHHHHHHHHHT----TCCEEEECHH---HHHHHHHTTCEEEECCCCH
T ss_pred HHHHHHHHHHHHC----CCeEEECCHH---HHHHHHHcCCcEEEEecCH
Confidence 4567778777764 4789999854 6899999999988877643
No 31
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=75.91 E-value=3.1 Score=25.19 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHh---CCceEEE
Q 039753 70 REELIKDSNARETHENITYVIADGNVE--QGIKVAEKL---NIQSAAF 112 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~l---gIP~~~f 112 (125)
-++.++.+.. .+|++||.|..++ -+.++++++ ++|.+..
T Consensus 42 g~eAl~~~~~----~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~l 85 (123)
T 2lpm_A 42 MQEALDIARK----GQFDIAIIDVNLDGEPSYPVADILAERNVPFIFA 85 (123)
T ss_dssp HHHHHHHHHH----CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCB
T ss_pred HHHHHHHHHh----CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEE
Confidence 4555555543 4799999999986 356666654 7886544
No 32
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=75.62 E-value=5.5 Score=28.01 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
..+.+++.+.....-.-.+.+||+|-- -+..+|+++|||.+.+-
T Consensus 107 ~~l~~ll~~~~~g~l~~~i~~Visn~~--~~~~~A~~~gIp~~~~~ 150 (292)
T 3lou_A 107 HCLADLLFRWKMGELKMDIVGIVSNHP--DFAPLAAQHGLPFRHFP 150 (292)
T ss_dssp HHHHHHHHHHHHTSSCCEEEEEEESSS--TTHHHHHHTTCCEEECC
T ss_pred cCHHHHHHHHHcCCCCcEEEEEEeCcH--HHHHHHHHcCCCEEEeC
Confidence 356667766543211136889999863 35678999999998764
No 33
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=75.40 E-value=5.2 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.6
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
.+.+||+|---.-..+.|+++|||.+.+-+.
T Consensus 32 ~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~ 62 (212)
T 3av3_A 32 RVALLVCDRPGAKVIERAARENVPAFVFSPK 62 (212)
T ss_dssp EEEEEEESSTTCHHHHHHHHTTCCEEECCGG
T ss_pred eEEEEEeCCCCcHHHHHHHHcCCCEEEeCcc
Confidence 6788999854456788999999999876553
No 34
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=75.09 E-value=6.5 Score=26.22 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.7
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
.+.+||++---.-..+.|++.|||.+.+-+.
T Consensus 30 ~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~ 60 (216)
T 2ywr_A 30 SIELVISDNPKAYAIERCKKHNVECKVIQRK 60 (216)
T ss_dssp EEEEEEESCTTCHHHHHHHHHTCCEEECCGG
T ss_pred eEEEEEeCCCChHHHHHHHHcCCCEEEeCcc
Confidence 5788999865456788999999999886553
No 35
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=74.82 E-value=6.1 Score=27.69 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
..+.+++.+.....-.-.+.+||+|-- -+..+|+++|||.+.+-
T Consensus 102 ~~l~~ll~~~~~g~l~~~i~~Visn~~--~~~~~A~~~gIp~~~~~ 145 (286)
T 3n0v_A 102 HCLNDLLYRQRIGQLGMDVVAVVSNHP--DLEPLAHWHKIPYYHFA 145 (286)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEEESSS--TTHHHHHHTTCCEEECC
T ss_pred CCHHHHHHHHHCCCCCcEEEEEEeCcH--HHHHHHHHcCCCEEEeC
Confidence 456677766543211136889999853 35678999999998763
No 36
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=74.42 E-value=7.6 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
....++.++++.++ .+++||.|.. +.+.|+++|+|.+...+
T Consensus 140 ~ee~~~~i~~l~~~----G~~vVVG~~~---~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 140 EEDARGQINELKAN----GTEAVVGAGL---ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEESHH---HHHHHHHTTSEEEESSC
T ss_pred HHHHHHHHHHHHHC----CCCEEECCHH---HHHHHHHcCCcEEEECC
Confidence 45677888887764 4789999854 68999999999988774
No 37
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=74.16 E-value=19 Score=24.98 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=43.7
Q ss_pred CCCEEEEEeCccchHHHhhhhhhccccCCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhhcCCCCCe
Q 039753 7 HGFTITLSNTEYNHRQVMNILEEKNYVLDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDSNARETHENI 86 (125)
Q Consensus 7 ~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 86 (125)
+|+.|++++........... . ...++++..++....-. .. .. ...+.+++++ .++
T Consensus 33 ~g~~v~v~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~----~~-~~--------~~~l~~~~~~-------~~~ 87 (394)
T 3okp_A 33 DPESIVVFASTQNAEEAHAY-D----KTLDYEVIRWPRSVMLP----TP-TT--------AHAMAEIIRE-------REI 87 (394)
T ss_dssp CGGGEEEEEECSSHHHHHHH-H----TTCSSEEEEESSSSCCS----CH-HH--------HHHHHHHHHH-------TTC
T ss_pred cCCeEEEEECCCCccchhhh-c----cccceEEEEcccccccc----ch-hh--------HHHHHHHHHh-------cCC
Confidence 58889988766543311111 1 11357777776421100 11 01 1123344443 257
Q ss_pred eEEEecC--CcccHHHHHHHhCCceEEEcc
Q 039753 87 TYVIADG--NVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 87 ~~iI~D~--~~~w~~~vA~~lgIP~~~f~t 114 (125)
+.|+... ...+....++++|+|.+++..
T Consensus 88 Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (394)
T 3okp_A 88 DNVWFGAAAPLALMAGTAKQAGASKVIAST 117 (394)
T ss_dssp SEEEESSCTTGGGGHHHHHHTTCSEEEEEC
T ss_pred CEEEECCcchHHHHHHHHHhcCCCcEEEEe
Confidence 7777643 334677789999999666543
No 38
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=73.81 E-value=6.4 Score=27.44 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcchhHHHHH
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPAAAAVLA 121 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~~a~~~~ 121 (125)
..+.++++.+.. ..+.||+++...+ -+..+|++.|++.+.+-+.+...+.
T Consensus 224 ~~l~~l~~~ik~----~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~l~~~Y~~ 275 (291)
T 1pq4_A 224 QELKQLIDTAKE----NNLTMVFGETQFSTKSSEAIAAEIGAGVELLDPLAADWSS 275 (291)
T ss_dssp HHHHHHHHHHHT----TTCCEEEEETTSCCHHHHHHHHHHTCEEEEECTTCSSHHH
T ss_pred HHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHcCCeEEEEcCchhhHHH
Confidence 345555555544 4689999998775 4788999999999888766544333
No 39
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=73.06 E-value=6.6 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.5
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
.+.+||+|---.-+.+.|+++|||.+.+-+.
T Consensus 51 ~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~ 81 (229)
T 3auf_A 51 RVAVVISDRADAYGLERARRAGVDALHMDPA 81 (229)
T ss_dssp EEEEEEESSTTCHHHHHHHHTTCEEEECCGG
T ss_pred eEEEEEcCCCchHHHHHHHHcCCCEEEECcc
Confidence 5789999854445788999999999887653
No 40
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=72.48 E-value=6 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=24.2
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-------CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t~ 115 (125)
+|++||.|..++ -+.++++++ ++|.+.....
T Consensus 57 ~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 57 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECC
Confidence 689999999997 478888876 4787766554
No 41
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=72.21 E-value=5.8 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=23.3
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
++.+||+|-= .-+.+.|+++|||.+.+.
T Consensus 40 eI~~Vis~~~-a~~~~~A~~~gIp~~~~~ 67 (215)
T 3da8_A 40 RVVAVGVDRE-CRAAEIAAEASVPVFTVR 67 (215)
T ss_dssp EEEEEEESSC-CHHHHHHHHTTCCEEECC
T ss_pred eEEEEEeCCc-hHHHHHHHHcCCCEEEeC
Confidence 5889999875 347789999999999884
No 42
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=68.78 E-value=11 Score=21.61 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=22.3
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-------CCceEEEcch
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t~ 115 (125)
.+|++||.|..++ -+.++.+++ ++|.+++...
T Consensus 45 ~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 45 FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESC
T ss_pred cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecC
Confidence 3689999998875 366777665 4777766543
No 43
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=68.60 E-value=8.5 Score=27.20 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
..+.+++.......-.-.+.+||+|-- -+..+|+++|||.+.+
T Consensus 117 ~nl~~ll~~~~~g~l~~~I~~Visn~~--~~~~~A~~~gIp~~~~ 159 (302)
T 3o1l_A 117 HCLADLLHRWHSDELDCDIACVISNHQ--DLRSMVEWHDIPYYHV 159 (302)
T ss_dssp HHHHHHHHHHHTTCSCSEEEEEEESSS--TTHHHHHTTTCCEEEC
T ss_pred hhHHHHHHHHHCCCCCcEEEEEEECcH--HHHHHHHHcCCCEEEc
Confidence 456777776543211135889999753 2467899999999887
No 44
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=65.08 E-value=16 Score=21.33 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=21.8
Q ss_pred CCeeEEEecCCccc--HHHHHHHh-------CCceEEEcch
Q 039753 84 ENITYVIADGNVEQ--GIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~w--~~~vA~~l-------gIP~~~f~t~ 115 (125)
.+|++||.|..++- +.++.+++ ++|.+++...
T Consensus 47 ~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 47 NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecC
Confidence 36899999998763 55666554 5777766554
No 45
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=64.66 E-value=20 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEE--ecCCcccHHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVI--ADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI--~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
..+++++++. +|++|| -|....|+.-.|+++|||.+..-
T Consensus 84 ~~l~~~l~~~-------kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~e 124 (385)
T 4hwg_A 84 EKVDEVLEKE-------KPDAVLFYGDTNSCLSAIAAKRRKIPIFHME 124 (385)
T ss_dssp HHHHHHHHHH-------CCSEEEEESCSGGGGGHHHHHHTTCCEEEES
T ss_pred HHHHHHHHhc-------CCcEEEEECCchHHHHHHHHHHhCCCEEEEe
Confidence 3466666664 455544 46677788788999999976553
No 46
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=64.11 E-value=2.4 Score=34.13 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=19.3
Q ss_pred CCeeEEEecCC-ccc-HHHHHHHhCCceEEE
Q 039753 84 ENITYVIADGN-VEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~-~~w-~~~vA~~lgIP~~~f 112 (125)
.+|+.|.+-.. .++ +..+|+++|||.+.-
T Consensus 406 ~~PDVIHsH~~~sglva~llar~~gvP~V~T 436 (816)
T 3s28_A 406 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTI 436 (816)
T ss_dssp SCCSEEEEEHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 36888876432 222 567889999997653
No 47
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=62.87 E-value=15 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t 114 (125)
.+.++++.+.+ ..+.||+++...+ -+..+|++.|++.+.+.+
T Consensus 216 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~p 259 (286)
T 3gi1_A 216 QLKEIQDFVKE----YNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSP 259 (286)
T ss_dssp HHHHHHHHHHH----TTCCEEEECTTSCTHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHhCCeEEEecc
Confidence 44555555544 4689999998765 477899999999988754
No 48
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=62.41 E-value=22 Score=22.01 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=28.5
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
+.+.++++.++.. .++.++-.|. .--.++|+++|| |..+|+
T Consensus 53 iaPvleela~e~~-----~~v~~~KVdv--De~~~la~~ygV~siPTlilF 96 (137)
T 2qsi_A 53 LAVVLPELINAFP-----GRLVAAEVAA--EAERGLMARFGVAVCPSLAVV 96 (137)
T ss_dssp HHHHHHHHHHTST-----TTEEEEEECG--GGHHHHHHHHTCCSSSEEEEE
T ss_pred HHhHHHHHHHHcc-----CCcEEEEEEC--CCCHHHHHHcCCccCCEEEEE
Confidence 3455666655543 3677777774 567899999985 888776
No 49
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=62.24 E-value=18 Score=26.40 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=46.2
Q ss_pred cccccCCCEEEEEeCccchHHHhhhhhhcccc--CCCceEEeecCCCCCCcccccHHHHHHHHHHHchHHHHHHHHHhhh
Q 039753 2 QWLVKHGFTITLSNTEYNHRQVMNILEEKNYV--LDQIHLISIPDGLETWEDRSELGKLTESLMRVMPRKREELIKDSNA 79 (125)
Q Consensus 2 ~~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~--~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 79 (125)
+.|+.+|+.|++++.................. ..+++++.+|..-............+..+ ...+..++++..
T Consensus 44 ~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~- 118 (499)
T 2r60_A 44 LALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKFLPKEELWPYLHEY----VNKIINFYREEG- 118 (499)
T ss_dssp HHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEECCSCSSCCCGGGCGGGHHHH----HHHHHHHHHHHT-
T ss_pred HHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEecCCCcCCcCHHHHHHHHHHH----HHHHHHHHHhcC-
Confidence 56778999999998643221100000000000 24788888874211000111111111111 112333343321
Q ss_pred cCCCCCeeEEEecCCc-c-cHHHHHHHhCCceEEE
Q 039753 80 RETHENITYVIADGNV-E-QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 80 ~~~~~~~~~iI~D~~~-~-w~~~vA~~lgIP~~~f 112 (125)
.+++.|.+-... . .+..+++.+|+|.+..
T Consensus 119 ----~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~ 149 (499)
T 2r60_A 119 ----KFPQVVTTHYGDGGLAGVLLKNIKGLPFTFT 149 (499)
T ss_dssp ----CCCSEEEEEHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ----CCCCEEEEcCCcchHHHHHHHHhcCCcEEEE
Confidence 257777665432 2 2445678889997754
No 50
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=60.37 E-value=15 Score=25.80 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcch
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~ 115 (125)
.+.++++.+.+ ..+.||+++...+ -+..||++.|++.+.+.+.
T Consensus 227 ~l~~l~~~ik~----~~v~~If~e~~~~~~~~~~ia~e~g~~v~~l~~l 271 (312)
T 2o1e_A 227 SLAKLKTYAKE----HNVKVIYFEEIASSKVADTLASEIGAKTEVLNTL 271 (312)
T ss_dssp HHHHHHHHTTS----SCCCEEECSSCCCHHHHHHHHHHTCCEEECCCCT
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHhCCcEEEeccc
Confidence 34555555543 4689999999876 4888999999999887643
No 51
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=60.04 E-value=15 Score=26.44 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEe--cCCcccH-HHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIA--DGNVEQG-IKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~--D~~~~w~-~~vA~~lgIP~~~f~ 113 (125)
.+++++++. +|++|+. |....|+ .-.|++.|||.+.+.
T Consensus 102 ~l~~~l~~~-------kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ 142 (396)
T 3dzc_A 102 GMQQVLSSE-------QPDVVLVHGDTATTFAASLAAYYQQIPVGHVE 142 (396)
T ss_dssp HHHHHHHHH-------CCSEEEEETTSHHHHHHHHHHHTTTCCEEEET
T ss_pred HHHHHHHhc-------CCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 455666554 4665544 5555564 668889999987653
No 52
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=59.02 E-value=16 Score=21.62 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCeeEEEecCCccc--HHHHHHHhC---------CceEEEcch
Q 039753 84 ENITYVIADGNVEQ--GIKVAEKLN---------IQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~w--~~~vA~~lg---------IP~~~f~t~ 115 (125)
.+|++||.|.-++- +.++.+++. +|.+++...
T Consensus 57 ~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 57 EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 36899999998763 666766652 677766553
No 53
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=57.20 E-value=16 Score=25.22 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcchh
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+.++++.+.. ..+.||+++...+ -+..+|++.|++.+.+-+.+
T Consensus 211 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~ia~~~g~~v~~ld~l~ 256 (284)
T 2prs_A 211 RLHEIRTQLVE----QKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLG 256 (284)
T ss_dssp HHHHHHHHHHH----TTCCEEEECTTSCSHHHHHHTTTSCCEEEECCTTC
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHcCCeEEEeccCc
Confidence 34444444443 4689999998765 48889999999998775443
No 54
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=56.75 E-value=25 Score=19.93 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=20.4
Q ss_pred CCeeEEEecCCccc--HHHHHHH----hCCceEEEcch
Q 039753 84 ENITYVIADGNVEQ--GIKVAEK----LNIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~w--~~~vA~~----lgIP~~~f~t~ 115 (125)
.+|++||.|.-++- +.++.++ .++|.+++...
T Consensus 45 ~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 45 LQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp TCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECC
Confidence 36888999987753 4455544 36777666543
No 55
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=54.81 E-value=35 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=18.5
Q ss_pred CCeeEEEecCCcc------cHHHHHHHhCCceEEE
Q 039753 84 ENITYVIADGNVE------QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~------w~~~vA~~lgIP~~~f 112 (125)
.+| +|+.+.-.. -..++|+++|+|.+.-
T Consensus 35 krP-vil~G~g~~~~~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 35 KRP-LLMVGTLALDPELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp SSE-EEEECSTTCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCC-EEEECCCccchhHHHHHHHHHHHhCCCEEEC
Confidence 356 455555432 2568999999998764
No 56
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=53.68 E-value=4.6 Score=28.33 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
..+.+++.......-.-.+.+||+|---. +.+.|+++|||.+.+-
T Consensus 100 ~nl~~ll~~~~~g~l~~~i~~Visn~~~a-~~~~A~~~gIp~~~~~ 144 (287)
T 3nrb_A 100 HCLGDLLYRHRLGELDMEVVGIISNHPRE-ALSVSLVGDIPFHYLP 144 (287)
T ss_dssp HHHHHHHHHHHHTSSCCEEEEEEESSCGG-GCCCCCCTTSCEEECC
T ss_pred cCHHHHHHHHHCCCCCeEEEEEEeCChHH-HHHHHHHcCCCEEEEe
Confidence 34566666654321113688999986433 5567999999998864
No 57
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=53.68 E-value=19 Score=26.83 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.5
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.+|.. ++...+|+|+|||.+..
T Consensus 375 ~pDllig~---~~~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 375 QAQLVIGN---SHALASARRLGVPLLRA 399 (458)
T ss_dssp TCSEEEEC---TTHHHHHHHTTCCEEEC
T ss_pred CCCEEEEC---hhHHHHHHHcCCCEEEe
Confidence 67888876 56789999999998743
No 58
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=53.02 E-value=22 Score=24.79 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=28.7
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceE--EEc
Q 039753 70 REELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSA--AFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~--~f~ 113 (125)
+.++++.+.+ ..+.||+++...+ -+..+|++.|++.+ .|.
T Consensus 221 l~~l~~~ik~----~~v~~if~e~~~~~~~~~~ia~~~g~~v~~~~~~ 264 (294)
T 3hh8_A 221 ISSLIEKLKV----IKPSALFVESSVDRRPMETVSKDSGIPIYSEIFT 264 (294)
T ss_dssp HHHHHHHHHH----SCCSCEEEETTSCSHHHHHHHHHHCCCEEEEECS
T ss_pred HHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHhCCcEEeeecC
Confidence 4444444443 3688999988765 47889999999998 654
No 59
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=52.83 E-value=16 Score=25.20 Aligned_cols=42 Identities=7% Similarity=0.137 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceEEEcc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~~f~t 114 (125)
.+.++++.+.. ..+.||+++...+ -+..+|++.|++.+.+.+
T Consensus 214 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l~~ 257 (284)
T 3cx3_A 214 QLTEIQEFVKT----YKVKTIFTESNASSKVAETLVKSTGVGLKTLNP 257 (284)
T ss_dssp HHHHHHHHHHH----TTCCCEEECSSSCCHHHHHHHSSSSCCEEECCC
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHcCCeEEEecC
Confidence 34444455443 3688999998775 478899999999987754
No 60
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=51.27 E-value=25 Score=23.77 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCccc---------HHHHHHHhCCceEEEcch
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQ---------GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w---------~~~vA~~lgIP~~~f~t~ 115 (125)
.+.+.++++. ...+.+|.|.-.+| ..|+|+.++.|.+.=-..
T Consensus 120 ~I~~~~~~l~-----~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 120 NLTQRLHNFT-----KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp HHHHHHHHGG-----GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHH-----hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcC
Confidence 4455555554 25678888875444 379999999998765443
No 61
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=48.45 E-value=30 Score=19.91 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=20.8
Q ss_pred CeeEEEecCCcc---cHHHHHHHh----CCceEEEcch
Q 039753 85 NITYVIADGNVE---QGIKVAEKL----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~---w~~~vA~~l----gIP~~~f~t~ 115 (125)
+|++||.|..++ -+.++.+++ ++|.+++...
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecC
Confidence 578999998663 355555554 6887777554
No 62
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=47.97 E-value=45 Score=21.20 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceE
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSA 110 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~ 110 (125)
..+.+.++|+.+...+ -+-+|++...-.++..+++++|+..+
T Consensus 93 ~~~g~~~~l~~l~~~g---~~~~ivS~~~~~~~~~~~~~~g~~~~ 134 (232)
T 3fvv_A 93 LTVQAVDVVRGHLAAG---DLCALVTATNSFVTAPIARAFGVQHL 134 (232)
T ss_dssp CCHHHHHHHHHHHHTT---CEEEEEESSCHHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHCC---CEEEEEeCCCHHHHHHHHHHcCCCEE
Confidence 3567888888887653 45688998888889999999999743
No 63
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=47.68 E-value=37 Score=19.22 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=20.1
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
.+|+++|.|.-++ -+.++.+++ ++|.+++...
T Consensus 46 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 46 VRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp CCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECC
Confidence 3578888888765 345555554 5676666543
No 64
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=47.51 E-value=42 Score=19.82 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=19.2
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
+|++||.|.-++ -+.++.+++ ++|.+++...
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 51 SVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECG
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecC
Confidence 578888887664 244555443 5676666544
No 65
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=47.41 E-value=35 Score=18.92 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=18.9
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~t~ 115 (125)
+|+++|.|.-++ .+.++.+++ ++|.+++...
T Consensus 45 ~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 45 QPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESC
T ss_pred CCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecC
Confidence 578888887664 244444443 5776666543
No 66
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=47.11 E-value=40 Score=21.18 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
.+|++||.|..++ -+.++++++ ++|.+++...
T Consensus 47 ~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 47 EQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp TSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4689999998775 355666554 5777776543
No 67
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=46.67 E-value=36 Score=19.74 Aligned_cols=30 Identities=7% Similarity=0.069 Sum_probs=19.0
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~t 114 (125)
+|++||.|.-++ -+.++.+++ .+|.+++..
T Consensus 48 ~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 48 KYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 578888888664 355555554 567666544
No 68
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.54 E-value=7 Score=23.55 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=12.7
Q ss_pred ccHHHHHHHhCCceEE
Q 039753 96 EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 96 ~w~~~vA~~lgIP~~~ 111 (125)
--+.++|+++|||.+.
T Consensus 70 ~~af~~a~~LGi~~ll 85 (119)
T 2d89_A 70 KKAYDGFASIGISRLL 85 (119)
T ss_dssp HHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhCCCccc
Confidence 3577889999999853
No 69
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=46.43 E-value=41 Score=19.45 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=18.5
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-------CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-------NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t 114 (125)
+|++||.|..++ -+.++.+++ ++|.+++..
T Consensus 47 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 47 PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEEC
Confidence 578888888764 345555544 466666543
No 70
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=46.30 E-value=7.5 Score=27.25 Aligned_cols=45 Identities=9% Similarity=-0.024 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~ 113 (125)
..+.+++.......-.-.+.+||+|--- -+...|+++|||.+.+-
T Consensus 101 ~nl~~ll~~~~~g~l~~~i~~Visn~p~-~~~~~A~~~gIp~~~~~ 145 (288)
T 3obi_A 101 HCLADILYRWRVGDLHMIPTAIVSNHPR-ETFSGFDFGDIPFYHFP 145 (288)
T ss_dssp HHHHHHHHHHHTTSSCEEEEEEEESSCG-GGSCCTTTTTCCEEECC
T ss_pred CCHHHHHHHHHCCCCCeEEEEEEcCCCh-hHHHHHHHcCCCEEEeC
Confidence 4566777666432111257899998611 13467999999998864
No 71
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=45.56 E-value=46 Score=19.76 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=19.2
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-------CCceEEEcc
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-------NIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t 114 (125)
.+|++||.|.-++ -+.++++++ ++|.+++..
T Consensus 50 ~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 50 TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEEC
Confidence 3688888888764 244555443 567666553
No 72
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=45.14 E-value=21 Score=24.54 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=12.2
Q ss_pred cHHHHHHHhCCceEE
Q 039753 97 QGIKVAEKLNIQSAA 111 (125)
Q Consensus 97 w~~~vA~~lgIP~~~ 111 (125)
-+.-+|+++|||.++
T Consensus 189 H~AIlAR~lgIPavv 203 (258)
T 1zym_A 189 HTSIMARSLELPAIV 203 (258)
T ss_dssp HHHHHHHHHTCCEEC
T ss_pred HHHHHHHHcCCCEEE
Confidence 345599999999886
No 73
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=45.04 E-value=43 Score=19.21 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=17.9
Q ss_pred CeeEEEecCCcc-------cHHHHHHHh-----CCceEEEcch
Q 039753 85 NITYVIADGNVE-------QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~-------w~~~vA~~l-----gIP~~~f~t~ 115 (125)
++++||.|.-++ -+.++.+++ ++|.+++...
T Consensus 47 ~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~ 89 (140)
T 2qr3_A 47 NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAY 89 (140)
T ss_dssp CEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEG
T ss_pred CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECC
Confidence 578888887654 234444433 5666666543
No 74
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=44.86 E-value=32 Score=24.10 Aligned_cols=30 Identities=17% Similarity=-0.079 Sum_probs=22.7
Q ss_pred CeeEEEecCCccc--HHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~lgIP~~~f~t 114 (125)
++.-+|.|.|++- +..+|.++|...+..=.
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~ 282 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEM 282 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeC
Confidence 4556899999975 77788899987766533
No 75
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=44.44 E-value=40 Score=18.75 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=16.8
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|+++|.|..++ -+.++.+++ ++|.+++..
T Consensus 47 ~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (120)
T 1tmy_A 47 KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSA 83 (120)
T ss_dssp CCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEEC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeC
Confidence 467777777664 244444443 456555543
No 76
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=44.01 E-value=32 Score=24.21 Aligned_cols=30 Identities=13% Similarity=-0.114 Sum_probs=22.6
Q ss_pred CeeEEEecCCccc--HHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~lgIP~~~f~t 114 (125)
++.-+|.|.|++. +..+|.++|...+.+=.
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~ 272 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGRNSICTDA 272 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTCEEEEEES
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCCcEEEEEC
Confidence 3456899999975 67788899987766543
No 77
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=43.30 E-value=42 Score=19.28 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=18.5
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|.-++ -+.++.+++ ++|.+++..
T Consensus 49 ~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (133)
T 3b2n_A 49 NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTT 85 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEec
Confidence 578888888765 245555544 466666543
No 78
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=43.28 E-value=12 Score=20.83 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=11.2
Q ss_pred cHHHHHHHhCCce
Q 039753 97 QGIKVAEKLNIQS 109 (125)
Q Consensus 97 w~~~vA~~lgIP~ 109 (125)
=+.++|++||++.
T Consensus 31 Ta~~IAkkLg~sK 43 (75)
T 1sfu_A 31 TAISLSNRLKINK 43 (75)
T ss_dssp CHHHHHHHTTCCH
T ss_pred HHHHHHHHHCCCH
Confidence 4899999999974
No 79
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=42.33 E-value=39 Score=22.73 Aligned_cols=30 Identities=20% Similarity=0.009 Sum_probs=22.0
Q ss_pred CeeEEEecCCccc--HHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~lgIP~~~f~t 114 (125)
++.-+|.|.|++- +..+|.++|...+..=.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~ 242 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDM 242 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeC
Confidence 3456899999975 66788889987665533
No 80
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=42.24 E-value=1.1e+02 Score=23.21 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCcc-----cHHHHHHHhCCceEEEcc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNVE-----QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~-----w~~~vA~~lgIP~~~f~t 114 (125)
...+..++.+...-.+++.++.+...+ .+++-|+.+.-.. |.+-.|+-+|+|..+--.
T Consensus 411 ~~~l~RAvlEgia~~~r~~~~~l~~~g--~~~~~i~~~GGga~ks~~~~Qi~ADv~g~pV~~~~~ 473 (572)
T 3jvp_A 411 PEEIYRALLEATAFGTRAIVDAFHGRG--VEVHELYACGGLPQKNHLLMQIFADVTNREIKVAAS 473 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEEESSHHHHCHHHHHHHHHHHTSCEEEBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcCEEEEEcCchhhCHHHHHHHHHHHCCeeEecCC
Confidence 445555665555566777777776533 5678888877555 999999999999876543
No 81
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=42.22 E-value=35 Score=21.16 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=25.3
Q ss_pred HHHHHHhhhcCCCCCeeEEEecCCccc--HHHHHHHh-----CCceEEEcch
Q 039753 71 EELIKDSNARETHENITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 71 ~~~l~~l~~~~~~~~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t~ 115 (125)
++.++.+.. .+|++||.|..++- +.++++++ ++|.+++...
T Consensus 41 ~~al~~~~~----~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 41 DEALKLAGA----EKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHTT----SCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHhh----CCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCC
Confidence 444554433 46899999998753 55555543 5776666543
No 82
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=42.14 E-value=49 Score=19.08 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=19.1
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|+++|.|..++ -+.++.+++ ++|.+++..
T Consensus 44 ~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~ 80 (139)
T 2jk1_A 44 WVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITG 80 (139)
T ss_dssp CEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEES
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeC
Confidence 688999998775 355555544 466666543
No 83
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=42.05 E-value=50 Score=19.21 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=19.0
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|.-++ -+.++.+++ ++|.+++..
T Consensus 49 ~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 49 PPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 578899888765 355555544 466665543
No 84
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=42.00 E-value=49 Score=19.07 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=14.9
Q ss_pred CeeEEEecCCccc--HHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|. ++- +.++.+++ ++|.+++..
T Consensus 48 ~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 48 KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 567777776 532 33333332 366655543
No 85
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=41.28 E-value=50 Score=18.90 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=18.3
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|..++ -+.++.+++ ++|.+++..
T Consensus 47 ~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 47 FFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred CCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 578888888765 244444443 466666544
No 86
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=41.12 E-value=47 Score=20.64 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCc-c-----cHHHHHHHhCC
Q 039753 69 KREELIKDSNARETHENITYVIADGNV-E-----QGIKVAEKLNI 107 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~-~-----w~~~vA~~lgI 107 (125)
.+++.++++.++.+ ..+..++.+-+- + |+.++++++||
T Consensus 32 ~l~~~l~~le~~t~-~qi~Vvtv~~~~~g~~i~~~A~~l~~~wgi 75 (153)
T 3pvh_A 32 DLKKLLSDLEYRKK-LRLNFITVRKLTSKADAFEYADQVLEKWYP 75 (153)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEESCCSSSCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhC-CEEEEEEEcCCCCCCCHHHHHHHHHHHhCC
Confidence 34555555543322 467777777664 2 89999999886
No 87
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=40.68 E-value=49 Score=18.65 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=15.5
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL 105 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l 105 (125)
.+|+++|.|.-++ -+.++.+++
T Consensus 50 ~~~dlvl~D~~l~~~~g~~~~~~l 73 (129)
T 1p6q_A 50 NPHHLVISDFNMPKMDGLGLLQAV 73 (129)
T ss_dssp SCCSEEEECSSSCSSCHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3678999998775 356666655
No 88
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=40.31 E-value=31 Score=19.99 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=5.4
Q ss_pred CeeEEEecCCc
Q 039753 85 NITYVIADGNV 95 (125)
Q Consensus 85 ~~~~iI~D~~~ 95 (125)
+|++||.|..+
T Consensus 50 ~~dlvi~D~~l 60 (136)
T 3kto_A 50 DAIGMIIEAHL 60 (136)
T ss_dssp TEEEEEEETTG
T ss_pred CCCEEEEeCcC
Confidence 34555555443
No 89
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=39.99 E-value=47 Score=18.63 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=17.2
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|+++|.|.-++ -+.++++++ ++|.+++..
T Consensus 47 ~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 47 RPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 467888887664 244444443 466655543
No 90
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=39.83 E-value=49 Score=18.43 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=17.5
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-------CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-------NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t 114 (125)
+|+++|.|..++ -+.++.+++ ++|.+++..
T Consensus 45 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 45 KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEEC
Confidence 578888888765 244555443 456665543
No 91
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=39.73 E-value=52 Score=18.70 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=21.0
Q ss_pred CeeEEEecCCccc--HHHHHHHh-------CCceEEEcch
Q 039753 85 NITYVIADGNVEQ--GIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~l-------gIP~~~f~t~ 115 (125)
++++||.|..++- +.++++++ ++|.+++...
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCC
Confidence 6889999998763 56666654 4676666543
No 92
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=39.72 E-value=51 Score=18.64 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=17.5
Q ss_pred CeeEEEecCCccc--HHHHHHHh------CCceEEEcch
Q 039753 85 NITYVIADGNVEQ--GIKVAEKL------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~l------gIP~~~f~t~ 115 (125)
+|++||.|..++. +.++.+++ ..|.+++.+.
T Consensus 50 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 50 EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 5778888876643 44555443 2455555443
No 93
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=39.55 E-value=55 Score=19.27 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=17.4
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
+|++||.|..++ -+.++.+++ ++|.+++...
T Consensus 47 ~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 47 FAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECC
Confidence 567777777654 244444433 5666665443
No 94
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=39.48 E-value=39 Score=23.44 Aligned_cols=29 Identities=17% Similarity=0.005 Sum_probs=19.9
Q ss_pred CeeEEEe--cCCcccH-HHHHHHhCCceEEEc
Q 039753 85 NITYVIA--DGNVEQG-IKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~--D~~~~w~-~~vA~~lgIP~~~f~ 113 (125)
+|++|++ +....|. .-+|++.|||.+...
T Consensus 91 ~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~ 122 (376)
T 1v4v_A 91 GADYVLVHGDTLTTFAVAWAAFLEGIPVGHVE 122 (376)
T ss_dssp TCSEEEEESSCHHHHHHHHHHHHTTCCEEEET
T ss_pred CCCEEEEeCChHHHHHHHHHHHHhCCCEEEEe
Confidence 6788777 4344453 567888999987543
No 95
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=39.23 E-value=49 Score=18.22 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|+++|.|..++ .+.++.+++ ++|.+++..
T Consensus 45 ~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 45 NYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEEC
Confidence 689999998775 355555544 467666544
No 96
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=38.91 E-value=82 Score=22.01 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=33.0
Q ss_pred HHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceE
Q 039753 57 KLTESLMRVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSA 110 (125)
Q Consensus 57 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~ 110 (125)
+.+....+.+.+.++++|++..-+. ..++.+|.-..... ...+++++|+|.-
T Consensus 242 ~v~~~a~~~~~~~i~~~L~~~gl~~--~did~~v~Hq~~~~i~~~~~~~Lgl~~~ 294 (350)
T 4ewp_A 242 SVFRWAVWSMAKVAREALDAAGVEP--EDLAAFIPHQANMRIIDEFAKQLKLPES 294 (350)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCCG--GGEEEEEECCSCHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHhhhHHHHHHHHhhcCCh--hHhceEEecCCCHHHHHHHHHHcCcChH
Confidence 3344444455666777777653222 35888887666655 5569999999853
No 97
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=38.47 E-value=12 Score=22.09 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.3
Q ss_pred ccHHHHHH-HhCCceEE
Q 039753 96 EQGIKVAE-KLNIQSAA 111 (125)
Q Consensus 96 ~w~~~vA~-~lgIP~~~ 111 (125)
.-+.++|+ ++|||.+.
T Consensus 64 ~~af~~Ae~~lgi~~ll 80 (109)
T 1bkr_A 64 QNAFNLAEQHLGLTKLL 80 (109)
T ss_dssp HHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHcCCCccC
Confidence 35788997 79999764
No 98
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=38.43 E-value=41 Score=17.16 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=16.0
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---ceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---QSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---P~~~f 112 (125)
++..+-.| -.++++++|| |.+++
T Consensus 31 ~~~~~~v~-----~~~~~~~~~v~~~Pt~~~ 56 (77)
T 1ilo_A 31 DAEFEKIK-----EMDQILEAGLTALPGLAV 56 (77)
T ss_dssp CEEEEEEC-----SHHHHHHHTCSSSSCEEE
T ss_pred ceEEEEec-----CHHHHHHCCCCcCCEEEE
Confidence 56666666 5688999875 66665
No 99
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=38.25 E-value=65 Score=20.38 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=21.9
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcchh
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPAA 116 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~~ 116 (125)
.+|++||.|..++ -+.++.+++ ++|.+++....
T Consensus 45 ~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 45 EPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 3689999998775 355555544 57777765543
No 100
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.15 E-value=58 Score=18.80 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=17.2
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|..++ .+.++.+++ ++|.+++..
T Consensus 48 ~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~ 84 (137)
T 3cfy_A 48 KPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATA 84 (137)
T ss_dssp CCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEe
Confidence 467888887664 345555544 355555543
No 101
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=38.10 E-value=65 Score=20.52 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
.+|++||.|..++ -+.++.+++ ++|.+++..
T Consensus 50 ~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 50 NRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp SCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 3689999999775 355555544 577776654
No 102
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=38.09 E-value=52 Score=18.26 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=15.5
Q ss_pred CeeEEEecCCcc---cHHHHHHHh-------CCceEEE
Q 039753 85 NITYVIADGNVE---QGIKVAEKL-------NIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~---w~~~vA~~l-------gIP~~~f 112 (125)
+|+++|.|.-++ -+.++.+++ ++|.+++
T Consensus 49 ~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 49 RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 467777777554 233433332 4666666
No 103
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=38.04 E-value=58 Score=22.23 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHhhhcCCCCCeeEEEecCCcc-c--HHHHHH----HhCCceEEEcch
Q 039753 71 EELIKDSNARETHENITYVIADGNVE-Q--GIKVAE----KLNIQSAAFWPA 115 (125)
Q Consensus 71 ~~~l~~l~~~~~~~~~~~iI~D~~~~-w--~~~vA~----~lgIP~~~f~t~ 115 (125)
++.++.+.. .+|++||.|+.|+ - +.++++ .-++|.+++...
T Consensus 195 ~eAl~~~~~----~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 195 GEALEAVTR----RTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHH----CCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHh----CCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCC
Confidence 455555543 4789999999988 2 333333 337998877654
No 104
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=37.98 E-value=13 Score=27.02 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=15.1
Q ss_pred CcccccCCCEEEEEeCcc
Q 039753 1 SQWLVKHGFTITLSNTEY 18 (125)
Q Consensus 1 a~~L~~~G~~VT~v~t~~ 18 (125)
|+.|+.+|++|++++...
T Consensus 72 a~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 72 FEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp HTTSCTTTCEEEEEESSC
T ss_pred HHHHHHcCCceEEEEecC
Confidence 467899999999998753
No 105
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=37.87 E-value=12 Score=22.41 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=12.0
Q ss_pred cHHHHHHH-hCCceEE
Q 039753 97 QGIKVAEK-LNIQSAA 111 (125)
Q Consensus 97 w~~~vA~~-lgIP~~~ 111 (125)
-+.++|++ +|||.+.
T Consensus 69 ~af~~Ae~~lgi~~lL 84 (116)
T 1wyl_A 69 WALKVAENELGITPVV 84 (116)
T ss_dssp HHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHcCCcccc
Confidence 57889997 9999753
No 106
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=37.71 E-value=54 Score=18.27 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=17.8
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~t 114 (125)
+|+++|.|..++ -+.++++++ ++|.+++..
T Consensus 47 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~ 82 (123)
T 1xhf_A 47 DINLVIMDINLPGKNGLLLARELREQANVALMFLTG 82 (123)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEES
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence 577888887664 244455443 466665543
No 107
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=37.57 E-value=63 Score=19.00 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCCCeeEEEecCCccc--HHHHHHHh-----CCceEEEcch
Q 039753 71 EELIKDSNARETHENITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 71 ~~~l~~l~~~~~~~~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t~ 115 (125)
++.++.+.. .+|++||.|..++- +.++.+++ ++|.+++...
T Consensus 48 ~~a~~~l~~----~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 48 TQALQLLAS----REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHH----SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHc----CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECC
Confidence 444444433 36899999987753 45555543 5676665543
No 108
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=37.39 E-value=33 Score=25.70 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=20.8
Q ss_pred CCeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
.+|+.+|.. +....+|+|+|||.+.+
T Consensus 400 ~~pDL~ig~---~~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 400 YQADILIAG---GRNMYTALKGRVPFLDI 425 (483)
T ss_dssp TTCSEEECC---GGGHHHHHHTTCCBCCC
T ss_pred cCCCEEEEC---CchhHHHHHcCCCEEEe
Confidence 368899874 56788999999998754
No 109
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=37.06 E-value=41 Score=25.32 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=20.6
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.+|.. +....+|+++|||.+-.
T Consensus 417 ~pDL~ig~---~~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 417 KPDLIGSG---IKEKFIFQKMGIPFREM 441 (492)
T ss_dssp CCSEEEEC---HHHHHHHHHTTCCEEES
T ss_pred CCcEEEeC---cchhHHHHHcCCCEEec
Confidence 68888885 56788999999998853
No 110
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=36.80 E-value=60 Score=18.60 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=20.6
Q ss_pred CCeeEEEecCCccc--HHHHHHHh-------CCceEEEcch
Q 039753 84 ENITYVIADGNVEQ--GIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~w--~~~vA~~l-------gIP~~~f~t~ 115 (125)
.+|++||.|..++- +.++.+++ ++|.+++...
T Consensus 49 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 49 RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecC
Confidence 36899999987753 45555443 5676666544
No 111
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=36.68 E-value=58 Score=18.35 Aligned_cols=31 Identities=23% Similarity=0.135 Sum_probs=20.2
Q ss_pred CeeEEEecCCcc---cHHHHHHHh-----CCceEEEcch
Q 039753 85 NITYVIADGNVE---QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~---w~~~vA~~l-----gIP~~~f~t~ 115 (125)
+|++||.|..++ -+.++.+++ ++|.+++...
T Consensus 50 ~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp CCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 688999998764 245555544 5777776543
No 112
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=36.51 E-value=50 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCeeEEEecCCccc--HHHHHHHh-----CCceEEEcch
Q 039753 84 ENITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t~ 115 (125)
.+|++||.|..++- +.++++++ ++|.+++...
T Consensus 48 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~ 86 (394)
T 3eq2_A 48 EQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGA 86 (394)
T ss_dssp SCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcC
Confidence 36899999998863 66777665 5787766544
No 113
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=36.26 E-value=66 Score=22.64 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceE
Q 039753 70 REELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSA 110 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~ 110 (125)
+.++++.+.+ ..+.||+++...+ -+..+|++.|++.+
T Consensus 242 l~~l~~~ik~----~~v~~If~e~~~~~~~~~~iA~e~g~~v~ 280 (321)
T 1xvl_A 242 VQTVIEEVKT----NNVPTIFCESTVSDKGQKQVAQATGARFG 280 (321)
T ss_dssp HHHHHHHHHT----TTCSEEEEETTSCSHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHH----cCCcEEEEeCCCChHHHHHHHHhcCCcee
Confidence 3444444443 4688999998775 46789999999986
No 114
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=35.96 E-value=67 Score=23.83 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=24.4
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE-cchhHH
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF-WPAAAA 118 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f-~t~~a~ 118 (125)
..+++++......+..+.+++|+|.+.+ .+.+..
T Consensus 238 ~~ni~~~~~~~~~A~~Le~~~GiP~~~~~~p~G~~ 272 (458)
T 3pdi_B 238 VATLVVGQSLAGAADALAERTGVPDRRFGMLYGLD 272 (458)
T ss_dssp SCEEEESGGGHHHHHHHHHHSCCCEEEECCSCHHH
T ss_pred cEEEEecHHHHHHHHHHHHHHCCCEEecCCCcCHH
Confidence 5666777665566777889999999987 355543
No 115
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=35.94 E-value=73 Score=21.90 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCc---ccHHHHHHHhCCceEE
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNV---EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~---~w~~~vA~~lgIP~~~ 111 (125)
...++.+++.+.+. ..+..|.-. +=+..+|+++|||.+.
T Consensus 141 ~~~M~~vm~~L~~~------gL~FlDS~Ts~~S~a~~~A~~~gvp~~~ 182 (261)
T 2qv5_A 141 QSALEPVMRDIGKR------GLLFLDDGSSAQSLSGGIAKAISAPQGF 182 (261)
T ss_dssp HHHHHHHHHHHHHT------TCEEEECSCCTTCCHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHC------CCEEEcCCCCcccHHHHHHHHcCCCeEE
Confidence 45677777777653 245567665 5689999999999875
No 116
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=35.53 E-value=50 Score=20.86 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=18.4
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|..++ .+.++++++ ++|.+++..
T Consensus 51 ~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~ 87 (215)
T 1a04_A 51 DPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSV 87 (215)
T ss_dssp CCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEEC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEEC
Confidence 578888888765 345555544 456555544
No 117
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=35.42 E-value=44 Score=22.13 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=27.6
Q ss_pred HHHHHHHH-hhhcCCCCCeeEEEecCCccc---------HHHHHHHhCCceEEEcc
Q 039753 69 KREELIKD-SNARETHENITYVIADGNVEQ---------GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 69 ~~~~~l~~-l~~~~~~~~~~~iI~D~~~~w---------~~~vA~~lgIP~~~f~t 114 (125)
.+.+.+++ +. ...+.+|.|.-.+| ..++|+.++.|.+.--.
T Consensus 98 ~i~~~~~~~l~-----~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~ 148 (228)
T 3of5_A 98 NLKQFIEDKYN-----QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSA 148 (228)
T ss_dssp HHHHHHHGGGG-----SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHH-----ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEc
Confidence 34555555 43 35688898875433 58999999999876443
No 118
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A
Probab=34.63 E-value=92 Score=22.11 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEE
Q 039753 58 LTESLMRVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAA 111 (125)
Q Consensus 58 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~ 111 (125)
.+....+.+...++++|++..-+. ..++++|.--.... ...+++++|||.-.
T Consensus 260 v~~~~~~~~~~~i~~~L~~~gl~~--~did~~v~Hq~n~~i~~~~~~~Lgl~~ek 312 (365)
T 3gwa_A 260 VMAFSLAEVPRAADRLLALAGEPR--ENIDCFVLHQANRFMLDALRKKMKIPEHK 312 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCG--GGCSEEEECCCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCH--HHCCEEEEcCCCHHHHHHHHHHhCCCHHH
Confidence 343344555666777777653221 35788887776654 56699999998543
No 119
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=34.49 E-value=78 Score=20.79 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc--HHHHHHHh----CCceEEEcchh
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ--GIKVAEKL----NIQSAAFWPAA 116 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w--~~~vA~~l----gIP~~~f~t~~ 116 (125)
.++.++.+.. .+|++||.|..++- +.++.+++ ++|.+++....
T Consensus 70 ~~~al~~~~~----~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 70 AMNGLIKARE----DHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHH----SCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHhc----CCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 3455555543 46899999998863 45566554 57877765543
No 120
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=34.35 E-value=53 Score=23.64 Aligned_cols=38 Identities=13% Similarity=-0.060 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEe--cCCccc-HHHHHHHhCCceEEEc
Q 039753 69 KREELIKDSNARETHENITYVIA--DGNVEQ-GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~--D~~~~w-~~~vA~~lgIP~~~f~ 113 (125)
.+++++++. +|++|+. |....| +...|++.|||.+..-
T Consensus 105 ~l~~~l~~~-------kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ 145 (403)
T 3ot5_A 105 GINEVIAAE-------NPDIVLVHGDTTTSFAAGLATFYQQKMLGHVE 145 (403)
T ss_dssp HHHHHHHHH-------CCSEEEEETTCHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHc-------CCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 456666654 4565543 555556 4678899999987554
No 121
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=34.34 E-value=1.5e+02 Score=22.26 Aligned_cols=60 Identities=7% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEcch
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~t~ 115 (125)
...+..++.+...-.+++.++.+....+ .+++-|+.+.-. .|.+-.|+-+|+|...--..
T Consensus 373 ~~~i~RAvlEgia~~~r~~le~l~~~~g-~~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~~~ 436 (526)
T 3ezw_A 373 ANHIIRATLESIAYQTRDVLEAMQADSG-IRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVR 436 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEECchhhCHHHHHHHHHHHCCEEEeCCCC
Confidence 3445555555555567777777654222 567778777644 49999999999999876543
No 122
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=33.96 E-value=50 Score=20.41 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhhcCCCCC-eeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 67 PRKREELIKDSNARETHEN-ITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~-~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
.+.++++.++.. .+ +..+-.|. .--.++|+++|| |..+||-
T Consensus 55 aPvleela~e~~-----g~~v~~~KVdv--De~~~lA~~ygV~sIPTlilFk 99 (140)
T 2qgv_A 55 PVMIGELLHEFP-----DYTWQVAIADL--EQSEAIGDRFGAFRFPATLVFT 99 (140)
T ss_dssp HHHHHHHHTTCT-----TSCCEEEECCH--HHHHHHHHHHTCCSSSEEEEEE
T ss_pred HhHHHHHHHHcC-----CCeEEEEEEEC--CCCHHHHHHcCCccCCEEEEEE
Confidence 344555554442 35 66666663 356889999975 8877763
No 123
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=33.60 E-value=58 Score=21.36 Aligned_cols=30 Identities=20% Similarity=0.006 Sum_probs=18.7
Q ss_pred CeeEEEecCCcccHHH-HHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQGIK-VAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~-vA~~lgIP~~~f~t 114 (125)
.++.||.-....-..+ .+++.|||.+.+..
T Consensus 64 ~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~ 94 (277)
T 3e61_A 64 NCTGMISTAFNENIIENTLTDHHIPFVFIDR 94 (277)
T ss_dssp TCSEEEECGGGHHHHHHHHHHC-CCEEEGGG
T ss_pred CCCEEEEecCChHHHHHHHHcCCCCEEEEec
Confidence 5777776554333445 66677999887754
No 124
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=33.59 E-value=69 Score=18.32 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcch
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWPA 115 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~ 115 (125)
.+.++++-+.+........+..+-.|.- --.++++++|| |.+.|+..
T Consensus 52 ~p~~~~la~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~ 101 (127)
T 3h79_A 52 MRLWDDLSMSQSQKRNHLTFVAARIDGE--KYPDVIERMRVSGFPTMRYYTR 101 (127)
T ss_dssp HHHHHHHHHHHHTSTTTTTEEEEEEETT--TCHHHHHHTTCCSSSEEEEECS
T ss_pred hHHHHHHHHHHHhcccCCCeEEEEEEcc--ccHhHHHhcCCccCCEEEEEeC
Confidence 3445555444432111134666666653 35789999975 77777653
No 125
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=33.58 E-value=43 Score=25.19 Aligned_cols=27 Identities=4% Similarity=0.065 Sum_probs=23.1
Q ss_pred eeEEEecCCccc--HHHHHHHhCCceEEE
Q 039753 86 ITYVIADGNVEQ--GIKVAEKLNIQSAAF 112 (125)
Q Consensus 86 ~~~iI~D~~~~w--~~~vA~~lgIP~~~f 112 (125)
=+++-+|.|+++ ..+.|.+.||-.++=
T Consensus 405 G~vlASDAFFPF~D~v~~aa~aGv~aIiQ 433 (464)
T 1zcz_A 405 GAVAASDAFFPFPDSLEILAQAGVKAVVA 433 (464)
T ss_dssp TCEEEESSCCSSHHHHHHHHHTTCCEEEE
T ss_pred CeEEEecccCCchhhHHHHHHhCCeEEEc
Confidence 368999999987 889999999987763
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=33.55 E-value=44 Score=22.42 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=20.2
Q ss_pred CeeEEEecC--Ccc-----cHHHHHHHhCCceEEE
Q 039753 85 NITYVIADG--NVE-----QGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~--~~~-----w~~~vA~~lgIP~~~f 112 (125)
+++||+.|= |++ +..++| +.|||.+++
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la-~~gi~Vi~~ 134 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLS-ADGHRVIVA 134 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHH-HTTCEEEEE
T ss_pred CCCEEEEechhcCCHHHHHHHHHHH-HCCCEEEEe
Confidence 678999996 444 355566 689999886
No 127
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=33.42 E-value=42 Score=25.67 Aligned_cols=26 Identities=8% Similarity=0.150 Sum_probs=22.6
Q ss_pred eEEEecCCccc--HHHHHHHhCCceEEE
Q 039753 87 TYVIADGNVEQ--GIKVAEKLNIQSAAF 112 (125)
Q Consensus 87 ~~iI~D~~~~w--~~~vA~~lgIP~~~f 112 (125)
+++.+|.|+++ ..+.|.+.||-.++=
T Consensus 465 ~vlaSDAFFPF~D~ve~aa~aGv~aIiQ 492 (523)
T 3zzm_A 465 AVAASDAFFPFPDGLETLAAAGVTAVVH 492 (523)
T ss_dssp CEEEESSCCSSHHHHHHHHHTTCCEEEE
T ss_pred eEEEeccCcCCCccHHHHHHcCCEEEEC
Confidence 68999999987 888999999987753
No 128
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}
Probab=32.90 E-value=88 Score=22.09 Aligned_cols=52 Identities=6% Similarity=0.029 Sum_probs=33.3
Q ss_pred HHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEEE
Q 039753 59 TESLMRVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~f 112 (125)
+....+.+...++++|++..-+. ..++++|.--.... ...+++++|+|.-.+
T Consensus 239 ~~~~~~~~~~~i~~~l~~~gl~~--~did~~v~Hq~~~~i~~~~~~~Lgl~~ek~ 291 (354)
T 4efi_A 239 FNFTLNAVPKLVSRTLDIAGRDK--DSYDAFLFHQANLFMLKHLAKKAGLPAERV 291 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCG--GGCSEEEECCCCHHHHHHHHHHTTCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH--HHCCEEEeCCCCHHHHHHHHHHhCcCHHHH
Confidence 33334455666777777653221 35788888777755 566999999985433
No 129
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=32.73 E-value=84 Score=22.31 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEEE
Q 039753 59 TESLMRVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~f 112 (125)
+....+.+...++++|++..-+. ..++++|.--.... ...+++++|+|.-.+
T Consensus 249 ~~~~~~~~~~~i~~~L~~~gl~~--~did~~v~Hq~n~~i~~~~~~~lgl~~ek~ 301 (359)
T 3h78_A 249 FEHASQTLVRIAGEMLAAHELTL--DDIDHVICHQPNLRILDAVQEQLGIPQHKF 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCG--GGCSEEEECCSCHHHHHHHHHHHTCCGGGB
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH--HHCCEEEECCCCHHHHHHHHHHhCcCHHHh
Confidence 33334455566677776643221 35788887777655 566999999985433
No 130
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=32.43 E-value=93 Score=19.79 Aligned_cols=43 Identities=5% Similarity=-0.010 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcc---------cHHHHHHHhCCceEEEcc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVE---------QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~---------w~~~vA~~lgIP~~~f~t 114 (125)
...+++.++++. ...++||.|.-.+ -..++|+.++.|.+.-..
T Consensus 95 ~~~l~~~l~~l~-----~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~ 146 (224)
T 1byi_A 95 SLVMSAGLRALE-----QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVG 146 (224)
T ss_dssp HHHHHHHHHHHH-----TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHH-----HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEec
Confidence 345667777764 3578999998733 247899998877655443
No 131
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=32.39 E-value=67 Score=17.80 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=17.8
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~t 114 (125)
+|+++|.|.-++ -+.++.+++ ++|.+++..
T Consensus 46 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~ 81 (122)
T 1zgz_A 46 SVDLILLDINLPDENGLMLTRALRERSTVGIILVTG 81 (122)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEES
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEEC
Confidence 567888887664 245555554 456555543
No 132
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=32.18 E-value=29 Score=24.88 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHhCCceEEEc
Q 039753 98 GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~ 113 (125)
+.++++++|||.|.|=
T Consensus 111 g~~i~~~l~VPVyLYg 126 (325)
T 1qd1_A 111 GQRLAEELGVPVYLYG 126 (325)
T ss_dssp HHHHHHHHTCCEEEEE
T ss_pred HHHHhhhcCCcEEeeh
Confidence 5667778999998774
No 133
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=32.16 E-value=70 Score=20.35 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=21.6
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEcchh
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFWPAA 116 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~t~~ 116 (125)
+|++||.|..++ -+.++++++ ++|.+++....
T Consensus 48 ~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~ 85 (230)
T 2oqr_A 48 GADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARD 85 (230)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCC
Confidence 588999998775 345555544 68877776544
No 134
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=32.15 E-value=16 Score=21.85 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=12.1
Q ss_pred cHHHHHH-HhCCceEE
Q 039753 97 QGIKVAE-KLNIQSAA 111 (125)
Q Consensus 97 w~~~vA~-~lgIP~~~ 111 (125)
-+.++|+ ++|||.+.
T Consensus 70 ~af~~Ae~~lgi~~ll 85 (118)
T 1bhd_A 70 HAFSKAQTYLGIEKLL 85 (118)
T ss_dssp HHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHcCCCccc
Confidence 4788997 99999764
No 135
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=32.14 E-value=61 Score=17.85 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=15.3
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~ 113 (125)
+|+++|.|..++ -+.++.+++ .+|.+++.
T Consensus 45 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 45 KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 456777776554 244444443 35555543
No 136
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=32.12 E-value=63 Score=23.01 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=27.3
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc-------------------cHHHHHHHhCCceEEEc
Q 039753 70 REELIKDSNARETHENITYVIADGNVE-------------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~-------------------w~~~vA~~lgIP~~~f~ 113 (125)
++..++++..+. +.+..||.|.+.. ....+|+++|||.++..
T Consensus 143 i~~~ir~l~~~~--gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~ls 203 (338)
T 4a1f_A 143 IRLQLRKLKSQH--KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALV 203 (338)
T ss_dssp HHHHHHHHHHHC--TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHhc--CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444445544331 2589999996432 12568999999998864
No 137
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=32.03 E-value=35 Score=24.72 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI 107 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI 107 (125)
.+..+++++.+.+.+ -..+||+-.+-.++..+|+++|+
T Consensus 223 ~p~~~eLi~~L~~~G---~~v~IVSgg~~~~v~~ia~~lg~ 260 (385)
T 4gxt_A 223 LDEMVDLYRSLEENG---IDCYIVSASFIDIVRAFATDTNN 260 (385)
T ss_dssp CHHHHHHHHHHHHTT---CEEEEEEEEEHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHHCC---CeEEEEcCCcHHHHHHHHHHhCc
Confidence 577899999998764 45689999999999999999864
No 138
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=31.56 E-value=1.1e+02 Score=21.28 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEE
Q 039753 59 TESLMRVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAA 111 (125)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~ 111 (125)
+....+.+...+++++++..-+. ..++++|.-..... ...+++++|+|.-.
T Consensus 219 ~~~~~~~~~~~i~~~l~~~gl~~--~did~~v~Hq~~~~i~~~~~~~lgl~~ek 270 (323)
T 3il3_A 219 FKLAVRELSNVVEETLLANNLDK--KDLDWLVPHQANLRIITATAKKLEMDMSQ 270 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCT--TTCCEEEECCSCHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH--HHCCEEEEcCCCHHHHHHHHHHcCcCHHH
Confidence 33334445556666666543221 45888887776654 56699999998543
No 139
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=31.55 E-value=45 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=22.6
Q ss_pred eEEEecCCccc--HHHHHHHhCCceEEE
Q 039753 87 TYVIADGNVEQ--GIKVAEKLNIQSAAF 112 (125)
Q Consensus 87 ~~iI~D~~~~w--~~~vA~~lgIP~~~f 112 (125)
+++-+|.|+++ ..+.|.+.||-.++=
T Consensus 476 ~vlASDAFFPF~D~ve~Aa~aGV~aIiQ 503 (534)
T 4ehi_A 476 CVLASEAFFPFRDSIDEASKVGVKAIVE 503 (534)
T ss_dssp CEEECSSCCCSTHHHHHHHHTTCCEEEE
T ss_pred eEEEeccccCCCccHHHHHHcCCEEEEC
Confidence 68999999986 889999999987753
No 140
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=31.34 E-value=97 Score=20.45 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=19.4
Q ss_pred eeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 86 ITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 86 ~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
+..+..|. .--.++|+++|| |.+.++
T Consensus 65 v~~~~vd~--d~~~~~~~~~gv~~~Pt~~i~ 93 (243)
T 2hls_A 65 LKLNVYYR--ESDSDKFSEFKVERVPTVAFL 93 (243)
T ss_dssp EEEEEEET--TTTHHHHHHTTCCSSSEEEET
T ss_pred eEEEEecC--CcCHHHHHhcCCCcCCEEEEE
Confidence 77777773 334789999997 887776
No 141
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=31.14 E-value=79 Score=20.29 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=29.4
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcchh
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWPAA 116 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~~ 116 (125)
+.+.++++-++........++...-.|+= -..++|+++|| |.+.++.-+
T Consensus 62 l~P~~e~lA~~~~~~~~~~~v~f~kvD~d--~~~~la~~~~I~siPtl~~F~~g 113 (178)
T 3ga4_A 62 FEKTYHAVADVIRSQAPQSLNLFFTVDVN--EVPQLVKDLKLQNVPHLVVYPPA 113 (178)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEEETT--TCHHHHHHTTCCSSCEEEEECCC
T ss_pred HHHHHHHHHHHhhhccCCCCEEEEEEECc--cCHHHHHHcCCCCCCEEEEEcCC
Confidence 44556666665542110024555556643 47899999985 888877654
No 142
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=30.82 E-value=1.7e+02 Score=22.03 Aligned_cols=53 Identities=13% Similarity=0.007 Sum_probs=36.9
Q ss_pred HHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEc
Q 039753 59 TESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~ 113 (125)
..++.+...-.+++.++.+...+ .+++-|+.+.-. .|.+-+|+-+|+|..+--
T Consensus 418 ~rAvlEgia~~~r~~~e~l~~~g--~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~ 474 (554)
T 3l0q_A 418 YLATIQALALGTRHIIETMNQNG--YNIDTMMASGGGTKNPIFVQEHANATGCAMLLPE 474 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT--CCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCCCEEEEeCccccCHHHHHHHHHhhCCeEEecC
Confidence 44555555556777777765533 466777776644 399999999999988764
No 143
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=30.81 E-value=60 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=18.9
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f 112 (125)
+|+.+|.+ ++...+|+++|||.+.+
T Consensus 372 ~pDl~ig~---~~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 372 EPAAIFGT---QMERHVGKRLNIPCGVI 396 (511)
T ss_dssp CCSEEEEC---HHHHHHHHHHTCCEEEC
T ss_pred CCCEEEec---cchHHHHHhcCCCeEec
Confidence 46666654 46788999999998764
No 144
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=30.67 E-value=1.5e+02 Score=21.81 Aligned_cols=58 Identities=10% Similarity=-0.129 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEcc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~t 114 (125)
...+..++.+...-.+++.++.+...+ .++.-|+.+.-. .|.+-+|+-+|+|.+.--.
T Consensus 358 ~~~~~rAvlEgia~~~~~~~~~l~~~g--~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~ 419 (484)
T 2itm_A 358 PNELARAVLEGVGYALADGMDVVHACG--IKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTG 419 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCC
Confidence 444555555555666777777775433 345555555532 4999999999999987654
No 145
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=30.48 E-value=84 Score=18.33 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
..+++++.+.. .+|++||.|.-++ -+.++.+++ ++|.+++...
T Consensus 54 ~~~~al~~l~~----~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 54 NGQEAIQLLEK----ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp SHHHHHHHHTT----SCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred CHHHHHHHhhc----cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCC
Confidence 34556665543 4689999998764 355555543 5676666543
No 146
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=30.45 E-value=73 Score=18.29 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL 105 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l 105 (125)
.+|++||.|.-++ -+.++.+++
T Consensus 53 ~~~dlvllD~~lp~~~g~~~~~~l 76 (140)
T 3c97_A 53 RQFDVIIMDIQMPVMDGLEAVSEI 76 (140)
T ss_dssp SCCSEEEECTTCCSSCHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHH
Confidence 3689999999775 355565554
No 147
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=30.19 E-value=52 Score=21.12 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=20.3
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
+|++||.|..++ -+.++++++ ++|.+++...
T Consensus 47 ~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 47 RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY 84 (225)
T ss_dssp CCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECC
Confidence 589999999775 355555544 5666665443
No 148
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=30.13 E-value=76 Score=17.73 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=13.6
Q ss_pred CeeEEEecCCcc--cHHHHHHHh
Q 039753 85 NITYVIADGNVE--QGIKVAEKL 105 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l 105 (125)
+|+++|.|..++ -+.++.+++
T Consensus 49 ~~dlvi~D~~l~~~~g~~l~~~l 71 (128)
T 1jbe_A 49 GYGFVISDWNMPNMDGLELLKTI 71 (128)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH
Confidence 578888888765 355555554
No 149
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=30.13 E-value=56 Score=21.11 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=18.8
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~t 114 (125)
+|++||.|..++ -+.++.+++ ++|.+++..
T Consensus 49 ~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~ 84 (238)
T 2gwr_A 49 RPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTA 84 (238)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeC
Confidence 578888888764 244555444 577776654
No 150
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=30.03 E-value=29 Score=22.84 Aligned_cols=30 Identities=3% Similarity=-0.036 Sum_probs=25.0
Q ss_pred eEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 87 TYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 87 ~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+...||=..-...+|+++|+|.+++.+.+
T Consensus 171 ga~~veME~aa~a~~a~~~gip~~~ir~Is 200 (233)
T 3eei_A 171 EVKAVEMEAAAIAQTCHQLETPFVIIRAVS 200 (233)
T ss_dssp TEEEEESSHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CceEEechHHHHHHHHHHcCCCEEEEEEEe
Confidence 678889888888889999999988876543
No 151
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=29.95 E-value=79 Score=17.84 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=18.3
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
.+..+-.|. .-..++|+++|| |.+.|+-
T Consensus 51 ~~~~~~vd~--d~~~~l~~~~~V~~~PT~~~~~ 81 (105)
T 3zzx_A 51 DVVFLKVDV--DECEDIAQDNQIACMPTFLFMK 81 (105)
T ss_dssp TEEEEEEET--TTCHHHHHHTTCCBSSEEEEEE
T ss_pred CeEEEEEec--ccCHHHHHHcCCCeecEEEEEE
Confidence 344555553 346789999985 7777763
No 152
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=29.77 E-value=82 Score=17.97 Aligned_cols=41 Identities=2% Similarity=0.024 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHh-----CCceEEEc
Q 039753 70 REELIKDSNARETHENITYVIADGNVE--QGIKVAEKL-----NIQSAAFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~ 113 (125)
.++.++.+... .+++++|.|..++ -+.++.+++ ++|.+++.
T Consensus 48 ~~~al~~l~~~---~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 48 GSAFFQHRSQL---STCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHTGGGG---GSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHhC---CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 34555554430 1589999999875 466777766 46766664
No 153
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=29.72 E-value=1.7e+02 Score=21.74 Aligned_cols=57 Identities=11% Similarity=-0.050 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~ 113 (125)
...++.+..+...-.+++.++.+.+.+ .+++.|+.+.-. .|.+-+|+-+|+|...--
T Consensus 372 ~~~l~rAvlEgia~~~~~~~~~l~~~g--~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~ 432 (508)
T 3ifr_A 372 RGHLWRALLEAVALAFRHHVAVLDDIG--HAPQRFFASDGGTRSRVWMGIMADVLQRPVQLLA 432 (508)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCcccCHHHHHHHHHHhCCeEEecC
Confidence 444555555555556667776665433 466777777644 399999999999988765
No 154
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=29.67 E-value=87 Score=18.28 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=16.6
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|.-++ -+.++.+++ ++|.+++..
T Consensus 51 ~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 87 (153)
T 3cz5_A 51 TPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTM 87 (153)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEEC
Confidence 567777777654 234444433 466665543
No 155
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=29.59 E-value=1.2e+02 Score=19.76 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhC---CceEEEcch
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLN---IQSAAFWPA 115 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lg---IP~~~f~t~ 115 (125)
.+.++++.+++.... ..+..+-.|.-..--.++++++| +|.+.|+-.
T Consensus 49 ~p~~~~l~~~~~~~~--~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~ 98 (244)
T 3q6o_A 49 APTWXALAEDVKAWR--PALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXA 98 (244)
T ss_dssp HHHHHHHHHHTGGGT--TTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECT
T ss_pred HHHHHHHHHHHHhcc--CcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeC
Confidence 345566665554311 35777777865555788999996 588877753
No 156
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=29.50 E-value=55 Score=18.30 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=9.5
Q ss_pred HHHHHHHhCCce
Q 039753 98 GIKVAEKLNIQS 109 (125)
Q Consensus 98 ~~~vA~~lgIP~ 109 (125)
+.+||++.|||.
T Consensus 37 ageIae~~GvdK 48 (80)
T 2lnb_A 37 LAQLVKECQAPK 48 (80)
T ss_dssp HHHHHHHHTSCH
T ss_pred HHHHHHHHCCCH
Confidence 778888888863
No 157
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=29.33 E-value=83 Score=20.47 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc--HHHHHHHh-----CCceEEEcchh
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWPAA 116 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t~~ 116 (125)
.++.++.+.. .+|++||.|..++- +.++++++ ++|.+++....
T Consensus 56 ~~~al~~~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 56 GAQALDRARE----TRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp HHHHHHHHHH----HCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECST
T ss_pred HHHHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3455555443 36899999998763 56666654 57777766543
No 158
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=29.20 E-value=1e+02 Score=20.97 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCC---cccHHHHHHHhCCceEE
Q 039753 67 PRKREELIKDSNARETHENITYVIADGN---VEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~---~~w~~~vA~~lgIP~~~ 111 (125)
...++.+++.+...+ .+..|.- -+=+..+|++.|||.+.
T Consensus 114 ~~~m~~vm~~l~~~g------L~fvDS~Ts~~S~a~~~A~~~gvp~~~ 155 (245)
T 2nly_A 114 EKIMRAILEVVKEKN------AFIIDSGTSPHSLIPQLAEELEVPYAT 155 (245)
T ss_dssp HHHHHHHHHHHHHTT------CEEEECCCCSSCSHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCC------CEEEcCCCCcccHHHHHHHHcCCCeEE
Confidence 456777777776532 4566665 35689999999999875
No 159
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=29.08 E-value=89 Score=19.75 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=22.0
Q ss_pred CeeEEEecCCcc--cHHHHHHH---------hCCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEK---------LNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~---------lgIP~~~f~t~ 115 (125)
+|++||.|..++ -+.+++++ -++|.+++...
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 789999999876 35555544 35787777664
No 160
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=29.05 E-value=77 Score=17.44 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=17.8
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
+|+++|.|..++ -+.++.+++ ++|.+++..
T Consensus 44 ~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 80 (121)
T 2pl1_A 44 IPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (121)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEES
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEec
Confidence 578888887664 244444443 466666544
No 161
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=28.97 E-value=19 Score=21.70 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.7
Q ss_pred cHHHHHHH-hCCceEE
Q 039753 97 QGIKVAEK-LNIQSAA 111 (125)
Q Consensus 97 w~~~vA~~-lgIP~~~ 111 (125)
.+.++|++ +|||.+.
T Consensus 71 ~af~~Ae~~lgi~~lL 86 (121)
T 2d88_A 71 LAFDIAEKELGISPIM 86 (121)
T ss_dssp HHHHHHHHHTCCCCSS
T ss_pred HHHHHHHHHcCCCCcC
Confidence 47889985 9999753
No 162
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.90 E-value=82 Score=17.70 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=15.1
Q ss_pred CCeeEEEecCCccc--HHHHHHHh-----CCceEEEcc
Q 039753 84 ENITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t 114 (125)
.+|++||.|..++- +.++.+++ ++|.+++..
T Consensus 50 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~ 87 (130)
T 3eod_A 50 FTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISA 87 (130)
T ss_dssp CCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEEC
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 35777777776542 33333332 456555543
No 163
>2y8t_B RON2, rhoptry NECK protein 2; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8s_B*
Probab=28.83 E-value=48 Score=15.02 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=8.7
Q ss_pred CCeeEEEecCC
Q 039753 84 ENITYVIADGN 94 (125)
Q Consensus 84 ~~~~~iI~D~~ 94 (125)
+|++|+-...+
T Consensus 13 ppvscvtneil 23 (37)
T 2y8t_B 13 PPVSCVTNEIL 23 (37)
T ss_dssp CCCSEEEETTT
T ss_pred CChhhhhhhhh
Confidence 78899977764
No 164
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=28.83 E-value=1.1e+02 Score=22.66 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=21.8
Q ss_pred CeeEEEecCCcc-------------------cHHHHHHHhCCceEEEc
Q 039753 85 NITYVIADGNVE-------------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~-------------------w~~~vA~~lgIP~~~f~ 113 (125)
.+..||.|.+.. ....+|+++|||.++..
T Consensus 354 ~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~ 401 (503)
T 1q57_A 354 GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVIC 401 (503)
T ss_dssp CCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEE
Confidence 578999998653 23467899999988763
No 165
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=28.74 E-value=89 Score=21.11 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=23.4
Q ss_pred CCeeEEEecCCccc----------HHHHHHHhCCceEEEcch
Q 039753 84 ENITYVIADGNVEQ----------GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~w----------~~~vA~~lgIP~~~f~t~ 115 (125)
...+.+|.|.-++| ..++|+.++.|.+.--..
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~ 166 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTA 166 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECS
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcC
Confidence 35688898875433 468999999998865544
No 166
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=28.25 E-value=1.3e+02 Score=20.61 Aligned_cols=45 Identities=4% Similarity=0.122 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcchh
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWPAA 116 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t~~ 116 (125)
.+.++++.+.+. ..+..+..|+=..--.++|+++|| |.+.|+-.+
T Consensus 54 ~p~~~~la~~~~-----~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g 101 (298)
T 3ed3_A 54 SSTFRKAAKRLD-----GVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPP 101 (298)
T ss_dssp HHHHHHHHHHTT-----TTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECC
T ss_pred HHHHHHHHHHcc-----CCcEEEEEEccCccCHHHHHhCCCCccceEEEEECC
Confidence 345555555553 235666666554446889999975 777776543
No 167
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=28.25 E-value=1.9e+02 Score=21.67 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEcc
Q 039753 54 ELGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~t 114 (125)
+...+..++.+.+.-.+++.++.+...+ .+++.|+.+.-. .|.+-+|+-+|+|.+.--.
T Consensus 395 ~~~~l~RAvlEgia~~~r~~l~~l~~~g--~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~ 457 (515)
T 3i8b_A 395 TRENLARAFVEGLLCSQRDCLELIRSLG--ASITRILLIGGGAKSEAIRTLAPSILGMDVTRPAT 457 (515)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCEEEEECchhcCHHHHHHHHHHhCCceEecCC
Confidence 3445555665555556777777765433 456667766644 4999999999999887543
No 168
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=28.17 E-value=37 Score=21.43 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=22.9
Q ss_pred CeeEEEecCCccc--------HHHHHHHhCCceEEEcchhHH
Q 039753 85 NITYVIADGNVEQ--------GIKVAEKLNIQSAAFWPAAAA 118 (125)
Q Consensus 85 ~~~~iI~D~~~~w--------~~~vA~~lgIP~~~f~t~~a~ 118 (125)
.++-.++|.--.+ +.-+|+|++.|+|+=|.+...
T Consensus 83 visT~L~~t~~~~~~D~a~rlAkiLarR~~~P~YVg~S~~~s 124 (151)
T 2z5b_A 83 VVGIPLLDTKDDRIRDMARHMATIISERFNRPCYVTWSSLPS 124 (151)
T ss_dssp EEEEEEECCSCHHHHHHHHHHHHHHHHHHTSCEEEEEEECTT
T ss_pred ceEEEeeccCCccHHHHHHHHHHHHHHHhCCCeEEEeecccc
Confidence 4555666633333 445778899999998877655
No 169
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=28.05 E-value=60 Score=18.14 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=18.2
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-------CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t~ 115 (125)
+|+++|.|..++ -+.++.+++ ++|.+++...
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (127)
T 2jba_A 46 WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTAR 85 (127)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEET
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCC
Confidence 578888887664 244555443 4566665443
No 170
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.99 E-value=73 Score=23.53 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=25.2
Q ss_pred CCeeEEEecCC-cccHHHHHHHhCCceEEE-cchhHH
Q 039753 84 ENITYVIADGN-VEQGIKVAEKLNIQSAAF-WPAAAA 118 (125)
Q Consensus 84 ~~~~~iI~D~~-~~w~~~vA~~lgIP~~~f-~t~~a~ 118 (125)
...+++++... ...+..+.+++|+|.+.+ .+.+..
T Consensus 235 A~~niv~~~~~~~~~A~~Le~~~GiP~~~~~~p~G~~ 271 (458)
T 1mio_B 235 SDLTLSLGSYASDLGAKTLEKKCKVPFKTLRTPIGVS 271 (458)
T ss_dssp CSEEEEESHHHHHHHHHHHHHHSCCCEEEECCCBHHH
T ss_pred CCEEEEEchhhHHHHHHHHHHHhCCCEEecCCCcCHH
Confidence 35667776654 467777888999999988 466543
No 171
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1
Probab=27.95 E-value=33 Score=22.52 Aligned_cols=30 Identities=3% Similarity=0.048 Sum_probs=24.9
Q ss_pred eEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 87 TYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 87 ~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+...||=..-...+|+++|+|.+.+.+.+
T Consensus 168 g~~~veME~aa~a~~a~~~~ip~~~ir~IS 197 (231)
T 3dp9_A 168 SVVAVEMEASAIAQTCHQFKVPFVVVRAIS 197 (231)
T ss_dssp TEEEEESSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCcEEechHHHHHHHHHHcCCCEEEEEEEe
Confidence 578889888888899999999988877543
No 172
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=27.79 E-value=38 Score=23.48 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=16.2
Q ss_pred HHHHHHHhCCceEEEcch
Q 039753 98 GIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~ 115 (125)
+.++|+++|.+.+++|+.
T Consensus 112 ~i~~A~~LGa~~vv~~~g 129 (333)
T 3ktc_A 112 SAGIVRELGANYVKVWPG 129 (333)
T ss_dssp HHHHHHHHTCSEEEECCT
T ss_pred HHHHHHHhCCCEEEECCC
Confidence 678999999999999976
No 173
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=27.74 E-value=98 Score=18.25 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
..+++++.+.... +++++||.|..++ -+.++.+++ ++|.+++...
T Consensus 69 ~~~~al~~l~~~~--~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 69 DGEEAVIKYKNHY--PNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp SHHHHHHHHHHHG--GGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred CHHHHHHHHHhcC--CCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEecc
Confidence 3455555554321 2689999998765 355555544 5777666543
No 174
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A
Probab=27.71 E-value=1.1e+02 Score=21.29 Aligned_cols=47 Identities=6% Similarity=0.018 Sum_probs=29.5
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEEE
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAAF 112 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~f 112 (125)
+.+...+++++++..-+. ..++++|.-..... ...+++++|+|.-.+
T Consensus 246 ~~~~~~i~~~l~~~gl~~--~did~~v~Hq~~~~i~~~~~~~lgl~~ek~ 293 (345)
T 3s21_A 246 KLAQKTFVAAKQVLGWAV--EELDQFVIHQVSRPHTAAFVKSFGIDPAKV 293 (345)
T ss_dssp HHHHHHHHHHHHHHCCCG--GGCSEEEECCSCHHHHHHHHHHHTCCGGGB
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEeCCCCHHHHHHHHHHcCcCHHHc
Confidence 344455666666542211 35788888777655 566999999985433
No 175
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=27.70 E-value=80 Score=17.65 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=18.9
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-------CCceEEEcc
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-------NIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t 114 (125)
.+|++||.|..++ -+.++.+++ ++|.+++..
T Consensus 46 ~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 46 RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 3688999998764 245555433 456655543
No 176
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=27.61 E-value=91 Score=17.84 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=14.2
Q ss_pred CeeEEEecCCcc--cHHHHHHHh
Q 039753 85 NITYVIADGNVE--QGIKVAEKL 105 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l 105 (125)
+|++||.|..++ -+.++++++
T Consensus 55 ~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 55 KVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHH
Confidence 578888887664 355666665
No 177
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.35 E-value=88 Score=17.58 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=18.5
Q ss_pred CeeEEEecCCccc--HHHHHHHh-------CCceEEEcc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKL-------NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~l-------gIP~~~f~t 114 (125)
+|++||.|..++- +.++.+++ ++|.+++..
T Consensus 47 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 47 PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 6889999987642 44444332 567666654
No 178
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=27.31 E-value=55 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=17.9
Q ss_pred CeeEEE--ecCCcccHHHHHHHhCCce
Q 039753 85 NITYVI--ADGNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 85 ~~~~iI--~D~~~~w~~~vA~~lgIP~ 109 (125)
+++.|+ +|.....+..+|++||+|.
T Consensus 75 ~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 75 PFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp CCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred CCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 567666 3555666778889999883
No 179
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=27.22 E-value=13 Score=23.66 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=9.5
Q ss_pred cccccCCCEEEEE
Q 039753 2 QWLVKHGFTITLS 14 (125)
Q Consensus 2 ~~L~~~G~~VT~v 14 (125)
..|+.+|++|+++
T Consensus 19 ~~La~~G~~V~v~ 31 (336)
T 3kkj_A 19 QALTAAGHQVHLF 31 (336)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHCCCCEEEE
Confidence 4567778887777
No 180
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=27.22 E-value=83 Score=20.74 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcch
Q 039753 71 EELIKDSNARETHENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 71 ~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t~ 115 (125)
++.++.+.. .++++||.|..++ -+.++++++ ++|.+++...
T Consensus 163 ~eal~~l~~----~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~ 210 (254)
T 2ayx_A 163 VDALNVLSK----NHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTAN 210 (254)
T ss_dssp HHHHHHHHH----SCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESS
T ss_pred HHHHHHHHh----CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 344444433 3689999999875 244555544 6887776553
No 181
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=27.18 E-value=27 Score=21.25 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=13.7
Q ss_pred HHHHHHhCCceEEEcch
Q 039753 99 IKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 99 ~~vA~~lgIP~~~f~t~ 115 (125)
.++|+++|+|...|...
T Consensus 104 i~~A~~~g~pV~~~~~~ 120 (125)
T 1t1j_A 104 MEFFEAGGQRVSLWSEV 120 (125)
T ss_dssp HHHHHHTTCEEEEHHHH
T ss_pred HHHHHHCCCcEEEEccc
Confidence 56999999999877543
No 182
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=27.03 E-value=22 Score=21.66 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=11.0
Q ss_pred HHHHHHHhCCceEE
Q 039753 98 GIKVAEKLNIQSAA 111 (125)
Q Consensus 98 ~~~vA~~lgIP~~~ 111 (125)
+.++|+++|+|.+.
T Consensus 77 ais~ArklG~~~~l 90 (124)
T 1wjo_A 77 AVSMARRIGARVYA 90 (124)
T ss_dssp HHHHHHHTCCSCCC
T ss_pred HHHHHHHcCCCccc
Confidence 66889999998743
No 183
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=27.02 E-value=1.3e+02 Score=20.39 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=19.8
Q ss_pred CeeEEEecCCccc----HHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQ----GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w----~~~vA~~lgIP~~~f~t 114 (125)
.++.||.....+- ..+-|++.|||.+.+..
T Consensus 60 ~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 60 GYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDS 93 (316)
T ss_dssp TCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecC
Confidence 5777776544322 34557778999998864
No 184
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=27.00 E-value=74 Score=24.55 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=18.2
Q ss_pred eeEEEecCC--cccHHHHHHHhCCceEE
Q 039753 86 ITYVIADGN--VEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 86 ~~~iI~D~~--~~w~~~vA~~lgIP~~~ 111 (125)
+..||.+.- .+-+.-+|+++|||.++
T Consensus 178 ~~Givt~~Gg~tSHaAIvAR~lgIPaVv 205 (572)
T 2wqd_A 178 VQGFATNIGGRTSASAIMSRSLEIPAIV 205 (572)
T ss_dssp EEEEEESSCCTTSHHHHHHHHTTCCEEE
T ss_pred eeEEEEcCCCcccHHHHHHHHcCCCEEE
Confidence 345555542 24567799999999887
No 185
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=26.81 E-value=62 Score=21.54 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=22.6
Q ss_pred eEEEecCCc-ccHHHHHHHhCCceEEEcch
Q 039753 87 TYVIADGNV-EQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 87 ~~iI~D~~~-~w~~~vA~~lgIP~~~f~t~ 115 (125)
..+|.|.-- ..+..=|.++|||.+.+.=+
T Consensus 118 lliV~Dp~~e~~ai~EA~~l~IPvIalvDT 147 (208)
T 1vi6_A 118 VVFVNDPAIDKQAVSEATAVGIPVVALCDS 147 (208)
T ss_dssp EEEESCTTTTHHHHHHHHHTTCCEEEEECT
T ss_pred EEEEECCCcchhHHHHHHHhCCCEEEEeCC
Confidence 367789865 36888899999999998643
No 186
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=26.76 E-value=71 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.5
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
+|+.+|.+ ++...+|+++|||.+.
T Consensus 349 ~pDL~ig~---~~~~~~a~~~giP~~~ 372 (525)
T 3aek_B 349 APELILGT---QMERNIAKKLGLPCAV 372 (525)
T ss_dssp CCSEEEEC---HHHHHHHHHHTCCEEE
T ss_pred CCCEEEec---chhHHHHHHcCCCEEE
Confidence 57888766 4788899999999875
No 187
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=26.64 E-value=76 Score=24.51 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=18.5
Q ss_pred eeEEEecCCc--ccHHHHHHHhCCceEE
Q 039753 86 ITYVIADGNV--EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 86 ~~~iI~D~~~--~w~~~vA~~lgIP~~~ 111 (125)
+..||.+.-. +-+.-+|+++|||.++
T Consensus 176 ~~Givt~~Gg~tSHaAIvAR~lgIPaVv 203 (575)
T 2hwg_A 176 VLGFITDAGGRTSHTSIMARSLELPAIV 203 (575)
T ss_dssp EEEEEESSCCTTSHHHHHHHHTTCCEEE
T ss_pred eeEEEEcCCCcccHHHHHHHHCCCCEEE
Confidence 4456665432 4567799999999887
No 188
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=26.61 E-value=46 Score=25.87 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=23.1
Q ss_pred eeEEEecCCccc--HHHHHHHhCCceEEE
Q 039753 86 ITYVIADGNVEQ--GIKVAEKLNIQSAAF 112 (125)
Q Consensus 86 ~~~iI~D~~~~w--~~~vA~~lgIP~~~f 112 (125)
=.++-+|.|+++ ..+.|.+-||-.++=
T Consensus 534 G~vlaSDAFFPF~D~v~~A~~aGV~aIiQ 562 (593)
T 1g8m_A 534 AVSLSSDAFFPFRDNVDRAKRIGVQFIVA 562 (593)
T ss_dssp CEEEEESSCCSSTHHHHHHHTTTEEEEEE
T ss_pred ceEEEeccccCCchhHHHHHHhCCeEEEC
Confidence 378999999987 889999999987763
No 189
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.57 E-value=99 Score=17.92 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=18.5
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---------ceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---------QSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---------P~~~f~t 114 (125)
.+..+-.|. .-..++++++|| |.+.|+-
T Consensus 59 ~v~~~~vd~--~~~~~~~~~~~v~~~~~~~~~Pt~~~~~ 95 (137)
T 2dj0_A 59 GLNFGKVDV--GRYTDVSTRYKVSTSPLTKQLPTLILFQ 95 (137)
T ss_dssp SCEEEECCT--TTCHHHHHHTTCCCCSSSSCSSEEEEES
T ss_pred CeEEEEEeC--ccCHHHHHHccCcccCCcCCCCEEEEEE
Confidence 466666665 335678898865 7777763
No 190
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.51 E-value=95 Score=18.09 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=14.4
Q ss_pred CeeEEEecCCccc--HHHHHHHh-----CCceEEEcc
Q 039753 85 NITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t 114 (125)
+|++||.|.-++- +.++.+++ ++|.+++..
T Consensus 50 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 86 (154)
T 2qsj_A 50 TVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISG 86 (154)
T ss_dssp CCSEEEECC------CHHHHHHHHHHCTTSEEEEC--
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeC
Confidence 5788888876542 33444433 466665543
No 191
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A
Probab=26.46 E-value=84 Score=22.59 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecC-----CcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIADG-----NVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~-----~~~w~~~vA~~lgIP~ 109 (125)
.....+++|++..-.. ..+++||+=. +.+-+..|++++|++.
T Consensus 100 a~~Aa~~AL~~ag~~~--~dId~li~~t~t~~~~p~~a~~v~~~LGl~~ 146 (387)
T 3oit_A 100 AAEAAKKAIAEWGRPA--ADITHLVVTTNSGAHVPGVDFRLVPLLGLRP 146 (387)
T ss_dssp HHHHHHHHHHHHTSCG--GGCCEEEEEESSCCEESCHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHcCCCH--HHCCEEEEEeeCCCCcccHHHHHHHHhCCCC
Confidence 3444556665532211 3577777532 2234778999999984
No 192
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=26.45 E-value=1e+02 Score=17.96 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=20.6
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-------CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t~ 115 (125)
+|++||.|.-++ -+.++.+++ ++|.+++...
T Consensus 61 ~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~ 100 (149)
T 1i3c_A 61 RPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTS 100 (149)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECC
Confidence 689999998775 245555543 4677776554
No 193
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=26.39 E-value=1e+02 Score=21.66 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=20.3
Q ss_pred CCeeEEEe--cC--------CcccHHHHHHHhCCceEE
Q 039753 84 ENITYVIA--DG--------NVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 84 ~~~~~iI~--D~--------~~~w~~~vA~~lgIP~~~ 111 (125)
..+.+||+ |- ..+-..+.|+++|||.+.
T Consensus 31 ~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~ 68 (318)
T 3q0i_A 31 HEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQ 68 (318)
T ss_dssp SEEEEEECCCC---------CCCHHHHHHHHTTCCEEC
T ss_pred CcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEc
Confidence 46788888 32 234578999999999754
No 194
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=26.39 E-value=20 Score=21.76 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=12.4
Q ss_pred ccHHHHHH-HhCCceEE
Q 039753 96 EQGIKVAE-KLNIQSAA 111 (125)
Q Consensus 96 ~w~~~vA~-~lgIP~~~ 111 (125)
--+.++|+ ++|||.+.
T Consensus 68 ~~af~~Ae~~Lgi~~ll 84 (127)
T 1wyq_A 68 QNAFNLAEKELGLTKLL 84 (127)
T ss_dssp HHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHcCCCccc
Confidence 35888998 79999764
No 195
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=26.14 E-value=38 Score=22.31 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=25.1
Q ss_pred eEEEecCCcccHHHHHHHhCCceEEEcchh
Q 039753 87 TYVIADGNVEQGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 87 ~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+...||=..-...+|+++|+|.++..+.+
T Consensus 169 ga~~veME~aa~a~va~~~~ip~~~ir~IS 198 (234)
T 3o4v_A 169 QAIAVEMEATAIAHVCHNFNVPFVVVRAIS 198 (234)
T ss_dssp TEEEEESSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CccEeehhHHHHHHHHHHhCCCEEEEEEEe
Confidence 578889888888899999999998887643
No 196
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=26.02 E-value=43 Score=24.79 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=17.2
Q ss_pred cHHHHHHHhCCceEEEcchh
Q 039753 97 QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~~ 116 (125)
.+.++|+++|++.+++|+..
T Consensus 171 ~aId~A~~LGa~~vv~~~G~ 190 (438)
T 1a0c_A 171 KALEITKELGGENYVFWGGR 190 (438)
T ss_dssp HHHHHHHHTTCSEEEECCTT
T ss_pred HHHHHHHHcCCCEEEEccCC
Confidence 56678999999999999764
No 197
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=26.01 E-value=1.2e+02 Score=21.41 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=21.1
Q ss_pred CCeeEEEe--cC--CcccHHHHHHHhCCceEEEc
Q 039753 84 ENITYVIA--DG--NVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 84 ~~~~~iI~--D~--~~~w~~~vA~~lgIP~~~f~ 113 (125)
..+.+||+ |- -..-..+.|++.|||.+..-
T Consensus 46 ~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~ 79 (329)
T 2bw0_A 46 HEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYS 79 (329)
T ss_dssp CEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECS
T ss_pred CeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecC
Confidence 36788888 32 12346689999999988753
No 198
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=25.95 E-value=64 Score=22.21 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred Cee-EEEecCCcc-cHHHHHHHhCCceEEEcch
Q 039753 85 NIT-YVIADGNVE-QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~-~iI~D~~~~-w~~~vA~~lgIP~~~f~t~ 115 (125)
.|+ .||.|.--. .+..=|.++|||.+.+.=+
T Consensus 151 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDT 183 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNT 183 (253)
T ss_dssp SCSEEEESCTTTTHHHHHHHHHTTCCEEEEECT
T ss_pred CCCEEEEECCCccchHHHHHHHhCCCEEEEEcC
Confidence 354 567888663 5788899999999998644
No 199
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.94 E-value=1e+02 Score=17.71 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=20.8
Q ss_pred CCeeEEEecCCcc---cHHHHHHH----hCCceEEEcch
Q 039753 84 ENITYVIADGNVE---QGIKVAEK----LNIQSAAFWPA 115 (125)
Q Consensus 84 ~~~~~iI~D~~~~---w~~~vA~~----lgIP~~~f~t~ 115 (125)
.+|++||.|.-++ -+.++.++ -++|.+++...
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 3689999998773 24555544 36787766543
No 200
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Probab=25.89 E-value=91 Score=22.26 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEec-----CCcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIAD-----GNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D-----~~~~w~~~vA~~lgIP~ 109 (125)
.....+++|++..-.. ..+++||+= .+.+.+..|++++|++.
T Consensus 102 a~~Aa~~aL~~ag~~~--~~Id~li~~t~~~~~~p~~a~~v~~~lGl~~ 148 (387)
T 3a5r_A 102 GKEAALKAIKEWGQPK--SKITHLIVCCLAGVDMPGADYQLTKLLDLDP 148 (387)
T ss_dssp HHHHHHHHHHHHCSCG--GGCCEEEEEESSCCEESCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHcCCCH--HHCCEEEEEecCCCCCCcHHHHHHHHcCcCC
Confidence 3344555665532111 357777652 22235789999999975
No 201
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.87 E-value=1e+02 Score=17.72 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=17.9
Q ss_pred CCeeEEEecCCccc--HHHHHHHh-------CCceEEEcc
Q 039753 84 ENITYVIADGNVEQ--GIKVAEKL-------NIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~w--~~~vA~~l-------gIP~~~f~t 114 (125)
.+|++||.|..++- +.++.+++ ++|.+++..
T Consensus 50 ~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 50 AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeC
Confidence 35788888876642 44444433 456665544
No 202
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Probab=25.68 E-value=53 Score=23.32 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEe-cCCcccHHHHHHHhCCceEEE
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIA-DGNVEQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~-D~~~~w~~~vA~~lgIP~~~f 112 (125)
+.+...++++|++..-+. ..++++|. -........+++++|||.-.+
T Consensus 238 ~~~~~~i~~~L~~~gl~~--~did~~v~~hq~~~~~~~~~~~lgl~~ek~ 285 (357)
T 3s3l_A 238 DLLVAAKTQALEDAGTAI--EDIAHAVIPVSRRGTGHELHDLLGLPDERT 285 (357)
T ss_dssp HHHHHHHHHHHHHTTCCG--GGCSEEECCSCCCCSSCCHHHHHTSCGGGB
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEecCcChHHHHHHHHHcCCCHHHh
Confidence 345555666666543221 35889984 665555677999999985443
No 203
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=25.52 E-value=43 Score=18.78 Aligned_cols=27 Identities=26% Similarity=0.132 Sum_probs=19.1
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
.+.+-=.|..---..++|++.|||.+-
T Consensus 19 ~VvAKG~~~~A~~I~~~A~e~~VPi~e 45 (83)
T 3bzy_B 19 LVIETGKDAKALQIIKLAELYDIPVIE 45 (83)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHcCCCEEe
Confidence 344555566666678899999999764
No 204
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=25.49 E-value=2.1e+02 Score=21.28 Aligned_cols=57 Identities=7% Similarity=-0.010 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~ 113 (125)
...+..++.+...-.+++.++.+...+ .+++-|+.+.-. .|.+-.|+-+|+|...--
T Consensus 365 ~~~l~RAvlEgia~~~r~~~~~l~~~g--~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~ 425 (504)
T 3ll3_A 365 KPEMARAVIEGIIFNLYDAASNLIKNT--KKPVAINATGGFLKSDFVRQLCANIFNVPIVTMK 425 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--CCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCEEEEeCchhcCHHHHHHHHHhhCCeEEecC
Confidence 445555665555566777777775443 356667777644 399999999999998863
No 205
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=25.36 E-value=1.5e+02 Score=19.57 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=21.2
Q ss_pred CeeEEEecCCccc--HHHHHHHh-------CCceEEEcch
Q 039753 85 NITYVIADGNVEQ--GIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~l-------gIP~~~f~t~ 115 (125)
+|++||.|..++- +.++.+++ .+|.+++...
T Consensus 169 ~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~ 208 (259)
T 3luf_A 169 AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVS 208 (259)
T ss_dssp TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEcc
Confidence 5899999998873 56666554 3666655543
No 206
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=25.35 E-value=99 Score=21.59 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=19.9
Q ss_pred CeeEEEecCCcc-cHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVE-QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~-w~~~vA~~lgIP~~~f~t 114 (125)
+|+.||...... -..+..+++|||.+.+-.
T Consensus 96 ~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 96 QPDVVFITYVDRXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp CCSEEEEESCCHHHHHHHHHHHTSCEEEECC
T ss_pred CCCEEEEeCCccchHHHHHHhcCCcEEEEec
Confidence 578888754321 234456788999998853
No 207
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=25.18 E-value=95 Score=21.38 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=20.8
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-------CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t~ 115 (125)
+|++||.|.-++ -+.++.+++ ++|.+++...
T Consensus 63 ~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~ 102 (358)
T 3bre_A 63 KPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTK 102 (358)
T ss_dssp CCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCC
Confidence 578999998876 356666665 3666666543
No 208
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=25.11 E-value=1.1e+02 Score=17.89 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 68 RKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 68 ~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
+.++++.+++. ..+..+-.|. .-..++++++|| |.++++
T Consensus 44 ~~l~~l~~~~~-----~~v~~~~vd~--~~~~~l~~~~~v~~~Pt~~~~ 85 (140)
T 3hz4_A 44 PYFEEYAKEYG-----SSAVFGRINI--ATNPWTAEKYGVQGTPTFKFF 85 (140)
T ss_dssp HHHHHHHHHHT-----TTSEEEEEET--TTCHHHHHHHTCCEESEEEEE
T ss_pred HHHHHHHHHhC-----CceEEEEEEC--CcCHhHHHHCCCCcCCEEEEE
Confidence 34455555543 2466666664 345789999987 666665
No 209
>2z3x_A SAsp, small, acid-soluble spore protein C; alpha/beta-type SAsp, bacillus subtils spore; 2.10A {Bacillus subtilis}
Probab=25.07 E-value=31 Score=18.46 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=9.0
Q ss_pred HHHHHHhCCce
Q 039753 99 IKVAEKLNIQS 109 (125)
Q Consensus 99 ~~vA~~lgIP~ 109 (125)
.++|+|||++-
T Consensus 17 ~EiA~ElGv~~ 27 (63)
T 2z3x_A 17 LEIASEFGVQL 27 (63)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCcc
Confidence 46899999975
No 210
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.82 E-value=1.1e+02 Score=17.79 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=24.0
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 70 REELIKDSNARETHENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
.+++++.+.. .+|++||.|..++ -+.++.+++ ++|.+++..
T Consensus 50 ~~~a~~~l~~----~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 97 (152)
T 3eul_A 50 GAAALELIKA----HLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISA 97 (152)
T ss_dssp HHHHHHHHHH----HCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEc
Confidence 4455555443 3578999998764 245555543 466665544
No 211
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type transferase; 1.90A {Marchantia polymorpha}
Probab=24.65 E-value=1.8e+02 Score=21.03 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEec-----CCcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIAD-----GNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D-----~~~~w~~~vA~~lgIP~ 109 (125)
.....+++|++..-.. ..+++||+= .+...+..|++++|+|.
T Consensus 124 a~~Aa~~aL~~agl~~--~dId~li~~t~~~~~~p~~a~~v~~~LGl~~ 170 (413)
T 2p0u_A 124 AKEASMNAIKEWGRPK--SEITHIVMATTSGVNMPGAELATAKLLGLRP 170 (413)
T ss_dssp HHHHHHHHHHHHTSCG--GGCCEEEEEESSCCCBSCHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCcCH--HHCCEEEEEecCCcccCcHHHHHHHHhCCCC
Confidence 3445566665542111 357777642 12234789999999985
No 212
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=24.56 E-value=1.5e+02 Score=20.58 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=30.2
Q ss_pred HHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCceEE
Q 039753 62 LMRVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQSAA 111 (125)
Q Consensus 62 ~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~~~ 111 (125)
..+.+...+++++++..-+. ..+++++.-..... ...+++++|+|.-.
T Consensus 232 ~~~~~~~~i~~~l~~~gl~~--~did~~~~Hq~~~~i~~~~~~~lgl~~~~ 280 (333)
T 4dfe_A 232 AVNVLEKVAVEALEKANLSA--EQIDWLIPHQANIRIMQSTCRKLGLPQER 280 (333)
T ss_dssp HHHHHHHHHHHHHHHTTCCG--GGCSEEEECCSCHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHCCEEEEcCCCHHHHHHHHHHhCCCHHH
Confidence 33445556666666543211 35788887776655 56699999998543
No 213
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=24.39 E-value=73 Score=17.97 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=12.3
Q ss_pred CeeEEEecCCcc--cHHHHHHH
Q 039753 85 NITYVIADGNVE--QGIKVAEK 104 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~ 104 (125)
+|+++|.|..++ -+.++.++
T Consensus 48 ~~dlvllD~~l~~~~g~~~~~~ 69 (130)
T 1dz3_A 48 RPDILLLDIIMPHLDGLAVLER 69 (130)
T ss_dssp CCSEEEEESCCSSSCHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHH
Confidence 468888887764 24444443
No 214
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase; HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2 c.95.1.2 PDB: 1qlv_A
Probab=24.33 E-value=1e+02 Score=22.18 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecC-----CcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIADG-----NVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~-----~~~w~~~vA~~lgIP~ 109 (125)
.....+++|++..-.. ..+++||+=. +.+.+..|++++|++.
T Consensus 111 a~~Aa~~aL~~agl~~--~~Id~vi~~t~~~~~~p~~a~~v~~~lGl~~ 157 (402)
T 1ee0_A 111 GKEAAVKAIDEWGLPK--SKITHLIFCTTAGVDMPGADYQLVKLLGLSP 157 (402)
T ss_dssp HHHHHHHHHHHHCSCG--GGCCEEEEECSSCCEESCHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHcCCCH--HHCCEEEEEecCCCCCChHHHHHHHHcCcCC
Confidence 3444556665532111 3577777522 2234789999999975
No 215
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=24.28 E-value=1e+02 Score=17.34 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=7.2
Q ss_pred CeeEEEecCCcc
Q 039753 85 NITYVIADGNVE 96 (125)
Q Consensus 85 ~~~~iI~D~~~~ 96 (125)
+|+++|.|.-++
T Consensus 47 ~~dlvl~D~~l~ 58 (136)
T 1mvo_A 47 KPDLIVLDVMLP 58 (136)
T ss_dssp CCSEEEEESSCS
T ss_pred CCCEEEEecCCC
Confidence 456667666553
No 216
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=24.05 E-value=1.5e+02 Score=21.06 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEEEcc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t 114 (125)
.+++.|++..-.. ..+.+|-+=-.= ..++|+++|+|...|..
T Consensus 228 ai~~aL~~~~l~~--~~v~~iasid~K--L~~~A~~l~~pl~~~~~ 269 (336)
T 3eeq_A 228 GIYKVLERLNLKR--ERIGIIASIREE--VKKIADEFNVRFRLVNE 269 (336)
T ss_dssp HHHHHHHHHTCCG--GGEEEEEESCTT--HHHHHHHHTCEEEECCH
T ss_pred HHHHHHHHcCCCH--HHhhEEEcHHHH--HHHHHHHhCCCEEEeCH
Confidence 3444454443211 245555432222 89999999999888753
No 217
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=24.01 E-value=1.2e+02 Score=18.86 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=20.2
Q ss_pred CeeEEEecCCcc--cHHHHHHHh----CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l----gIP~~~f~t~ 115 (125)
+|++||.|..++ -+.++++++ ..|.+++...
T Consensus 58 ~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~ 94 (205)
T 1s8n_A 58 KPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAF 94 (205)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEG
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecC
Confidence 689999999875 355555543 4566665443
No 218
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.91 E-value=31 Score=18.11 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=10.8
Q ss_pred HHHHHHHhCCce
Q 039753 98 GIKVAEKLNIQS 109 (125)
Q Consensus 98 ~~~vA~~lgIP~ 109 (125)
..++|+++|+|+
T Consensus 28 ~~eLA~~lglsr 39 (67)
T 2heo_A 28 IFQLVKKCQVPK 39 (67)
T ss_dssp HHHHHHHHCSCH
T ss_pred HHHHHHHHCcCH
Confidence 788999999985
No 219
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=23.73 E-value=2.1e+02 Score=20.98 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEE
Q 039753 57 KLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAF 112 (125)
Q Consensus 57 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f 112 (125)
.+..+..+...-.+++.++.+....+ .+++-|+.+.-. .|.+-.|+-+|+|.+.-
T Consensus 366 ~l~RAvlEgia~~~r~~~~~l~~~~g-~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~ 424 (489)
T 2uyt_A 366 ELARCIFDSLALLYADVLHELAQLRG-EDFSQLHIVGGGCQNTLLNQLCADACGIRVIAG 424 (489)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEeCChhhhHHHHHHHHHHHCCeeecC
Confidence 34444554445556666666654211 356667777644 39999999999998753
No 220
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=23.69 E-value=33 Score=16.44 Aligned_cols=11 Identities=9% Similarity=0.018 Sum_probs=8.3
Q ss_pred HHHHHHhCCce
Q 039753 99 IKVAEKLNIQS 109 (125)
Q Consensus 99 ~~vA~~lgIP~ 109 (125)
.++|+++|++.
T Consensus 6 ~~lAkel~~~~ 16 (49)
T 1nd9_A 6 KTLAAERQTSV 16 (49)
T ss_dssp THHHHHHSSSH
T ss_pred HHHHHHHCcCH
Confidence 46888888863
No 221
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=23.67 E-value=58 Score=26.66 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=19.8
Q ss_pred eeEEEecCCc--ccHHHHHHHhCCceEE
Q 039753 86 ITYVIADGNV--EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 86 ~~~iI~D~~~--~w~~~vA~~lgIP~~~ 111 (125)
...||.+--. +-+.-||+++|||.|+
T Consensus 470 a~gIvT~~GG~TSHAAIvAR~LGIPaVV 497 (913)
T 2x0s_A 470 ACGILTARGGMTSHAAVVARGMGKCCVS 497 (913)
T ss_dssp SSEEEESSCCTTCHHHHHHHTTTCCEEE
T ss_pred HHHHHHHccCCCChHHHHHHHcCCCeec
Confidence 3567777633 5688899999999986
No 222
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=23.58 E-value=40 Score=24.82 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=24.6
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE-cchhH
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF-WPAAA 117 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f-~t~~a 117 (125)
..+.+++......+..+ +++|+|.+.+ ++.+.
T Consensus 230 ~~niv~~~~~~~~A~~L-e~~GiP~i~~~~P~G~ 262 (437)
T 3aek_A 230 TRFILAQPFLGETTGAL-ERRGAKRIAAPFPFGE 262 (437)
T ss_dssp CEEEESSTTCHHHHHHH-HHTTCEECCCCCSCHH
T ss_pred cEEEEECccHHHHHHHH-HHcCCCeEecCCCcCH
Confidence 46677777666678889 9999999998 55553
No 223
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=23.31 E-value=1.3e+02 Score=21.04 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=20.9
Q ss_pred CCeeEEEecCC----------cccHHHHHHHhCCceEE
Q 039753 84 ENITYVIADGN----------VEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 84 ~~~~~iI~D~~----------~~w~~~vA~~lgIP~~~ 111 (125)
..+.+||++.= .+-..+.|+++|||.+.
T Consensus 27 ~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~ 64 (314)
T 1fmt_A 27 HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQ 64 (314)
T ss_dssp CEEEEEECCCCBC------CBCCHHHHHHHHTTCCEEC
T ss_pred CcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEe
Confidence 46888998731 24588899999999754
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=23.27 E-value=1.7e+02 Score=20.14 Aligned_cols=29 Identities=21% Similarity=0.035 Sum_probs=20.9
Q ss_pred Cee--EEEecCCcc-------------------cHHHHHHHhCCceEEEc
Q 039753 85 NIT--YVIADGNVE-------------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~--~iI~D~~~~-------------------w~~~vA~~lgIP~~~f~ 113 (125)
.+. .||.|.+.. ....+|+++|||.++..
T Consensus 179 ~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~ls 228 (315)
T 3bh0_A 179 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALS 228 (315)
T ss_dssp SSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 355 999998642 13456899999988864
No 225
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.24 E-value=1.1e+02 Score=19.84 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=19.2
Q ss_pred eeEEEecCCc----ccHHHHHHHhCCceEEEcc
Q 039753 86 ITYVIADGNV----EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 86 ~~~iI~D~~~----~w~~~vA~~lgIP~~~f~t 114 (125)
++.||.-... .-..+.+++.|||.+.+..
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDS 92 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEec
Confidence 7887776532 2244556677999988854
No 226
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=23.18 E-value=1.1e+02 Score=17.27 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
.++++.+++. ..+..+-.|.-..--.++++++|| |.++++-
T Consensus 47 ~l~~~~~~~~-----~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~ 90 (126)
T 2l57_A 47 ELSYVSKERE-----GKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLD 90 (126)
T ss_dssp HHHHHHHHSS-----SSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEEC
T ss_pred HHHHHHHHhc-----CCeEEEEEeCCCCchHHHHHHcCCcceeEEEEEC
Confidence 4455554442 246666666434556789999875 7777653
No 227
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Probab=23.09 E-value=1.1e+02 Score=22.18 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEe-c----CCcccHHHHHHHhCCce
Q 039753 67 PRKREELIKDSNARETHENITYVIA-D----GNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~-D----~~~~w~~~vA~~lgIP~ 109 (125)
....+++|++..-.. ..+++||+ . .+...+..|++++|++.
T Consensus 130 ~~Aa~~AL~~agl~~--~~Id~li~~t~~~~~~p~~a~~v~~~lGl~~ 175 (413)
T 1xes_A 130 KEAAEKAIQEWGQSK--SGITHLIFCSTTTPDLPGADFEVAKLLGLHP 175 (413)
T ss_dssp HHHHHHHHHHHCSCG--GGCCEEEEEESCCCEESCHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHcCCCH--HHCCEEEEEEeCCCccchHHHHHHHHcCcCC
Confidence 344555555532111 35777764 2 22235788999999975
No 228
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.08 E-value=75 Score=22.38 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=23.1
Q ss_pred ee-EEEecCCcc-cHHHHHHHhCCceEEEcch
Q 039753 86 IT-YVIADGNVE-QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 86 ~~-~iI~D~~~~-w~~~vA~~lgIP~~~f~t~ 115 (125)
|+ .||.|..-. -+..=|.++|||.+.+.=+
T Consensus 119 PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDT 150 (295)
T 2zkq_b 119 PRLLVVTDPRADHQPLTEASYVNLPTIALCNT 150 (295)
T ss_dssp CSEEEESCTTTTHHHHHHHHHHTCCEEEEECT
T ss_pred CCeEEEeCCCcchhHHHHHHHhCCCEEEEecC
Confidence 44 567888664 5778899999999998644
No 229
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=23.08 E-value=1.4e+02 Score=18.44 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=14.3
Q ss_pred ccHHHHHHHhCCceEEEcc
Q 039753 96 EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 96 ~w~~~vA~~lgIP~~~f~t 114 (125)
.+..++|++.|++.+=++.
T Consensus 143 ~~~~~~a~~~~v~~iD~~~ 161 (200)
T 4h08_A 143 QIALKHINRASIEVNDLWK 161 (200)
T ss_dssp HHHHHHHHHTTCEEECHHH
T ss_pred HHHHHHhhhcceEEEecHH
Confidence 3567889999999876554
No 230
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=22.98 E-value=87 Score=21.70 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=19.3
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
+|+.||......-..+--++.|||.+.+-..
T Consensus 116 ~PDLIi~~~~~~~~~~~L~~~gipvv~~~~~ 146 (335)
T 4hn9_A 116 TPDVVFLPMKLKKTADTLESLGIKAVVVNPE 146 (335)
T ss_dssp CCSEEEEEGGGHHHHHHHHHTTCCEEEECCC
T ss_pred CCCEEEEeCcchhHHHHHHHcCCCEEEEcCC
Confidence 6888887643222233335679999988643
No 231
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=22.92 E-value=50 Score=21.05 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=23.6
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 66 MPRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
+.+.++++-++.. ..+..+-.|. .-..++|+++|| |.+.|+
T Consensus 59 m~PvleelA~e~~-----~~v~f~kVDV--De~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 59 MDELLYKVADDIK-----NFCVIYLVDI--TEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp HHHHHHHHHHHHT-----TTEEEEEEET--TTCCTTTTTTTCCSSEEEEEE
T ss_pred HHHHHHHHHHHcc-----CCcEEEEEEC--CCCHHHHHHcCCCCCCEEEEE
Confidence 3445566555542 2455666665 234678888874 777654
No 232
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=22.92 E-value=1.2e+02 Score=22.27 Aligned_cols=29 Identities=21% Similarity=0.035 Sum_probs=21.4
Q ss_pred Cee--EEEecCCcc-------------------cHHHHHHHhCCceEEEc
Q 039753 85 NIT--YVIADGNVE-------------------QGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~--~iI~D~~~~-------------------w~~~vA~~lgIP~~~f~ 113 (125)
.++ .||.|.+.. ....+|+++|||.++..
T Consensus 308 ~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ls 357 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALS 357 (444)
T ss_dssp CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 467 999998642 22467899999988865
No 233
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=22.58 E-value=53 Score=21.75 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=16.6
Q ss_pred cHHHHHHHhCCceEEEcchh
Q 039753 97 QGIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~~ 116 (125)
...++|+++|.+.+++++..
T Consensus 92 ~~i~~a~~lGa~~vv~h~g~ 111 (270)
T 3aam_A 92 DDLEKAALLGVEYVVVHPGS 111 (270)
T ss_dssp HHHHHHHHHTCCEEEECCCB
T ss_pred HHHHHHHHcCCCEEEECCCC
Confidence 45688999999999998764
No 234
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=22.47 E-value=53 Score=23.47 Aligned_cols=19 Identities=16% Similarity=0.543 Sum_probs=16.2
Q ss_pred cHHHHHHHhCCceEEEcch
Q 039753 97 QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~ 115 (125)
-+.++|+++|.+.+++|+.
T Consensus 120 ~~i~~A~~LGa~~vv~~~G 138 (387)
T 1bxb_A 120 ETMDLGAELGAEIYVVWPG 138 (387)
T ss_dssp HHHHHHHHHTCCEEEECCT
T ss_pred HHHHHHHHhCCCEEEECCC
Confidence 3567899999999999985
No 235
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=22.39 E-value=1.1e+02 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=21.4
Q ss_pred CeeEEEecCCcc--cHHHHHHHh-------CCceEEEcch
Q 039753 85 NITYVIADGNVE--QGIKVAEKL-------NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t~ 115 (125)
+|++||.|..++ -+.++.+++ ++|.+++...
T Consensus 45 ~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~ 84 (459)
T 1w25_A 45 LPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITAL 84 (459)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECC
Confidence 589999999886 355666554 4677776554
No 236
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=22.36 E-value=1.2e+02 Score=17.31 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=18.7
Q ss_pred CCeeEEEecCCcc--cHHHHHHHh-----CCceEEEcc
Q 039753 84 ENITYVIADGNVE--QGIKVAEKL-----NIQSAAFWP 114 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA~~l-----gIP~~~f~t 114 (125)
.+|++||.|..++ -+.++.+++ ++|.+++..
T Consensus 48 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTG 85 (143)
T ss_dssp TTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEEC
Confidence 3678888887664 244555443 466665544
No 237
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=22.34 E-value=74 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeeEEEecCCc-----ccHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNV-----EQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~-----~w~~~vA~~lgIP~~~ 111 (125)
|+..|++|.-- -|+..+|.++|+|.+.
T Consensus 452 p~~~i~~D~HP~y~st~~Ak~lA~~~~iPli~ 483 (772)
T 4g9i_A 452 NLDLIIADLHPAYNTTKLAMEMANELDVELLQ 483 (772)
T ss_dssp CSSCEEEESCTTCHHHHHHHHHHTTTTCCCCE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHhcCCCeee
Confidence 44799999853 2888999999999764
No 238
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=22.29 E-value=53 Score=18.88 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=18.9
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
.+.+-=.|..---..++|++.|||.+-
T Consensus 19 ~VvAKG~~~~A~~I~e~A~e~gVPi~e 45 (93)
T 2vt1_B 19 FISLIETNQCALAVRKYANEVGIPTVR 45 (93)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHcCCCEEE
Confidence 344445565666678899999999764
No 239
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=22.28 E-value=1.4e+02 Score=23.66 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=27.2
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc----------HHHHHHH-hCCceEEEcchh
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ----------GIKVAEK-LNIQSAAFWPAA 116 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w----------~~~vA~~-lgIP~~~f~t~~ 116 (125)
.++.++.+.+. .+++|||.|..++- ...+-++ .++|.+.+..-+
T Consensus 41 g~~al~~~~~~---~~~d~vilDi~lp~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~ 95 (755)
T 2vyc_A 41 FDDGFAILSSN---EAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDRE 95 (755)
T ss_dssp HHHHHHHHTTT---CCCSEEEEECCCCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHH
T ss_pred HHHHHHHHhcC---CCCcEEEEeCCCCcccccccHHHHHHHHHHhCCCCCEEEEecCC
Confidence 45556555432 35899999999854 2223322 359988876543
No 240
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A*
Probab=22.16 E-value=1.6e+02 Score=21.00 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEec-----CCcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIAD-----GNVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D-----~~~~w~~~vA~~lgIP~ 109 (125)
.....+++|++..-.. ..+++||+= .+.+.+..|++++|++.
T Consensus 106 a~~Aa~~aL~~agl~~--~~Id~li~~t~~~~~~p~~a~~v~~~lGl~~ 152 (389)
T 1i88_A 106 GKEAAVKAIKEWGQPK--SKITHLIVCTTSGVDMPGADYQLTKLLGLRP 152 (389)
T ss_dssp HHHHHHHHHHHHCSCG--GGCCEEEEEESSCCCSSCHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHcCCCH--HHCCEEEEEECCCCCCchHHHHHHHHcCcCC
Confidence 3344556665532111 357777642 22235788999999975
No 241
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=22.12 E-value=78 Score=17.22 Aligned_cols=28 Identities=7% Similarity=0.181 Sum_probs=18.1
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
.+..+-.|. .-..++++++|| |.++++.
T Consensus 56 ~~~~~~vd~--~~~~~l~~~~~v~~~Pt~~~~~ 86 (111)
T 3uvt_A 56 GVKIAEVDC--TAERNICSKYSVRGYPTLLLFR 86 (111)
T ss_dssp CEEEEEEET--TTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceEEEEEec--cccHhHHHhcCCCcccEEEEEe
Confidence 455555554 345789999875 7777653
No 242
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=21.90 E-value=55 Score=23.44 Aligned_cols=19 Identities=11% Similarity=0.485 Sum_probs=16.2
Q ss_pred cHHHHHHHhCCceEEEcch
Q 039753 97 QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 97 w~~~vA~~lgIP~~~f~t~ 115 (125)
-+.++|+++|.+.+++|+.
T Consensus 120 ~~i~~A~~LGa~~vv~~~G 138 (393)
T 1xim_A 120 RQMDLGAELGAKTLVLWGG 138 (393)
T ss_dssp HHHHHHHHHTCCEEEEECT
T ss_pred HHHHHHHHhCCCEEEECCC
Confidence 3567899999999999975
No 243
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=21.89 E-value=1e+02 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=23.5
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCCceEE
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
+++++++. +|+.+|.- .+...+|+|+|||.+.
T Consensus 448 l~~~i~~~-------~pDl~ig~---~~~~~~a~k~gIP~~~ 479 (533)
T 1mio_A 448 MEVVLEKL-------KPDMFFAG---IKEKFVIQKGGVLSKQ 479 (533)
T ss_dssp HHHHHHHH-------CCSEEEEC---HHHHHHHHHTTCEEEE
T ss_pred HHHHHHhc-------CCCEEEcc---cchhHHHHhcCCCEEE
Confidence 45555543 57888754 5678899999999984
No 244
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=21.85 E-value=1.3e+02 Score=17.61 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhhhcCCCCCeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 67 PRKREELIKDSNARETHENITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 67 ~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
.+.++++.++.. ..+..+-.|. ..-.++++++|| |.++|+-
T Consensus 74 ~p~l~~~~~~~~-----~~~~~~~vd~--~~~~~l~~~~~v~~~Pt~~~~~ 117 (148)
T 3p2a_A 74 APIFAETAAERA-----GKVRFVKVNT--EAEPALSTRFRIRSIPTIMLYR 117 (148)
T ss_dssp HHHHHHHHHHTT-----TTCEEEEEET--TTCHHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHHHHcC-----CceEEEEEEC--cCCHHHHHHCCCCccCEEEEEE
Confidence 345555555543 2455555554 345688999876 7777763
No 245
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=21.83 E-value=33 Score=20.86 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=11.3
Q ss_pred cHHHHHHH-hCCceE
Q 039753 97 QGIKVAEK-LNIQSA 110 (125)
Q Consensus 97 w~~~vA~~-lgIP~~ 110 (125)
-+.++|++ +|||.+
T Consensus 69 ~af~~Ae~~lgip~l 83 (128)
T 2d87_A 69 VAFSSAETHADCPQL 83 (128)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHcCCCCcc
Confidence 47888987 799876
No 246
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=21.83 E-value=2.5e+02 Score=20.88 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~ 113 (125)
...+..++.+...-.+++.++.+....+ .+++.|+.+.-. .|.+-+|+-+|+|...--
T Consensus 372 ~~~l~RAvlEgia~~~r~~~~~l~~~~g-~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~ 433 (510)
T 2p3r_A 372 ANHIIRATLESIAYQTRDVLEAMQADSG-IRLHALRVDGGAVANNFLMQFQSDILGTRVERPE 433 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccEEEEeCchhcCHHHHHHHHHHhCCceEecC
Confidence 3445555555555566777777654211 456667766644 499999999999987654
No 247
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=21.79 E-value=1.4e+02 Score=20.38 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=21.6
Q ss_pred CeeEEEecCCccc--HHH---HHHHhCCceEEEc
Q 039753 85 NITYVIADGNVEQ--GIK---VAEKLNIQSAAFW 113 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~---vA~~lgIP~~~f~ 113 (125)
.+.||+++...+- +.. +|++.|+|.+.+.
T Consensus 212 ~v~~if~e~~~~~~~~~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 212 NIKAIFTESTTNPERMKKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp TCCEEECBTTSCTHHHHHHHHHHHTTSCCCEEET
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHhcCCceEEec
Confidence 6889999886653 333 4779999998864
No 248
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}
Probab=21.70 E-value=1.9e+02 Score=19.92 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=28.9
Q ss_pred HHchHHHHHHHHHhhhcCCCCCeeEEEecCCccc-HHHHHHHhCCce
Q 039753 64 RVMPRKREELIKDSNARETHENITYVIADGNVEQ-GIKVAEKLNIQS 109 (125)
Q Consensus 64 ~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~~w-~~~vA~~lgIP~ 109 (125)
+.+...++++|++..-+. ..+++++.-..... ...++++||+|.
T Consensus 224 ~~~~~~i~~aL~~agl~~--~did~~~~H~~~~~~~d~~~~~lg~~~ 268 (331)
T 2x3e_A 224 TQMSDSVRRVLDRVGWQA--SDLHHLVPHQANTRILAAVADQLDLPV 268 (331)
T ss_dssp HHHHHHHHHHHHHHTCCG--GGCSEEEECCCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHcCCCH--HHCCEEEEcCCCHHHHHHHHHHcCCCH
Confidence 344556666666543222 35788888887765 455999999974
No 249
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=21.58 E-value=85 Score=21.96 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHhCCceE
Q 039753 69 KREELIKDSNARETHENITYVIADGNVE--QGIKVAEKLNIQSA 110 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~lgIP~~ 110 (125)
.+.++++.+.+ ..+.||+++...+ -+..+|++.|++..
T Consensus 227 ~l~~l~~~ik~----~~v~~If~e~~~~~k~~~~ia~e~g~~v~ 266 (307)
T 3ujp_A 227 QVQTVIEEVKT----NNVPTIFCESTVSDKGQKQVAQATGARFG 266 (307)
T ss_dssp HHHHHHHHHHT----TTCSEEEEETTSCSHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHh----cCCcEEEEeCCCChHHHHHHHHHhCCcee
Confidence 34444555543 4688999998665 47889999999964
No 250
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.55 E-value=90 Score=20.64 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=23.0
Q ss_pred ee-EEEecCCcc-cHHHHHHHhCCceEEEcch
Q 039753 86 IT-YVIADGNVE-QGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 86 ~~-~iI~D~~~~-w~~~vA~~lgIP~~~f~t~ 115 (125)
|+ .+|.|.--. .+..=|.++|||.+.+.=+
T Consensus 112 Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DT 143 (202)
T 3j20_B 112 PDVLIVTDPRADHQAMREAVEIGIPIVALVDT 143 (202)
T ss_dssp CSEEEESCTTTSHHHHHHHHHHTCCEEEEECT
T ss_pred CCeEEEeCCccchHHHHHHHHcCCCEEEEEcC
Confidence 44 578888653 5777899999999988743
No 251
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=21.44 E-value=1.3e+02 Score=20.94 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=21.7
Q ss_pred CCeeEEEecCCcc--cHHHHH-----HHhCCceE
Q 039753 84 ENITYVIADGNVE--QGIKVA-----EKLNIQSA 110 (125)
Q Consensus 84 ~~~~~iI~D~~~~--w~~~vA-----~~lgIP~~ 110 (125)
..+.||+++...+ -+..+| ++.|+|..
T Consensus 245 ~~v~~If~e~~~~~~~~~~la~~~~A~e~gv~v~ 278 (313)
T 1toa_A 245 RKLPAIFIESSIPHKNVEALRDAVQARGHVVQIG 278 (313)
T ss_dssp TTCSEEEEETTSCTHHHHHHHHHHHTTTCCCEEE
T ss_pred cCCCEEEEeCCCChHHHHHHHccchhhhcCCcee
Confidence 4688999998775 377888 99999964
No 252
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=21.43 E-value=56 Score=18.98 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=18.4
Q ss_pred eeEEEecCCcccHHHHHHHhCCceEE
Q 039753 86 ITYVIADGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 86 ~~~iI~D~~~~w~~~vA~~lgIP~~~ 111 (125)
+.+-=.|..---..++|++.|||.+-
T Consensus 20 VvAKG~~~~A~~I~e~A~e~gVPi~e 45 (98)
T 3c01_E 20 ISVYETNQRALAVRAYAEKVGVPVIV 45 (98)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHcCCCeec
Confidence 44445565556678899999999764
No 253
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.43 E-value=37 Score=18.80 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=10.6
Q ss_pred HHHHHHHhCCce
Q 039753 98 GIKVAEKLNIQS 109 (125)
Q Consensus 98 ~~~vA~~lgIP~ 109 (125)
+.++|+++||++
T Consensus 30 ~~eLA~~Lgvsr 41 (81)
T 1qbj_A 30 AHDLSGKLGTPK 41 (81)
T ss_dssp HHHHHHHHTCCH
T ss_pred HHHHHHHHCcCH
Confidence 789999999975
No 254
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A*
Probab=21.42 E-value=1.7e+02 Score=21.06 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhhhcCCCCCeeEEEecC-----CcccHHHHHHHhCCce
Q 039753 66 MPRKREELIKDSNARETHENITYVIADG-----NVEQGIKVAEKLNIQS 109 (125)
Q Consensus 66 ~~~~~~~~l~~l~~~~~~~~~~~iI~D~-----~~~w~~~vA~~lgIP~ 109 (125)
.....+++|++..-.. ..+++||+=. +...+..|++++|++.
T Consensus 119 a~~Aa~~aL~~ag~~~--~~Id~vi~~t~~~~~~p~~a~~v~~~lGl~~ 165 (406)
T 2d3m_A 119 GTEAAVKAIEEWGRPK--SEITHLVFCTSCGVDMPSADFQCAKLLGLHA 165 (406)
T ss_dssp HHHHHHHHHHHHCSCG--GGCCEEEEEESSCCEESCHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHcCCCH--HHCCEEEEEecCCCCCCCHHHHHHHHcCcCC
Confidence 3344555665532111 3577776521 2235789999999975
No 255
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.38 E-value=1.2e+02 Score=17.47 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=20.2
Q ss_pred CeeEEEecCCccc--HHHHHHHh-----CCceEEEcch
Q 039753 85 NITYVIADGNVEQ--GIKVAEKL-----NIQSAAFWPA 115 (125)
Q Consensus 85 ~~~~iI~D~~~~w--~~~vA~~l-----gIP~~~f~t~ 115 (125)
+|++||.|..++- +.++.+++ ++|.+++...
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCC
Confidence 6889999998753 44555443 5777666543
No 256
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.34 E-value=1.8e+02 Score=19.16 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=19.4
Q ss_pred CeeEEEecCCccc----HHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVEQ----GIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w----~~~vA~~lgIP~~~f~t 114 (125)
.++.||.-....- ..+-+++.|||.+.+-.
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDT 94 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcC
Confidence 5777776443322 34456777999998764
No 257
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=21.34 E-value=1.6e+02 Score=21.50 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCCCCeeEEEecCCccc--------------------HHHHHHHhCCceEEEc
Q 039753 70 REELIKDSNARETHENITYVIADGNVEQ--------------------GIKVAEKLNIQSAAFW 113 (125)
Q Consensus 70 ~~~~l~~l~~~~~~~~~~~iI~D~~~~w--------------------~~~vA~~lgIP~~~f~ 113 (125)
++..++++..+ ..++.||.|.+..- ...+|+++|+|.++..
T Consensus 301 i~~~~~~l~~~---~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~s 361 (454)
T 2r6a_A 301 IRAKCRRLKQE---SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALS 361 (454)
T ss_dssp HHHHHHHHHTT---TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHH---cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 34444444433 35789999975421 4567889999988764
No 258
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}
Probab=21.27 E-value=53 Score=21.38 Aligned_cols=29 Identities=3% Similarity=-0.002 Sum_probs=23.3
Q ss_pred eEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 87 TYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 87 ~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
.+...||=..-...+|+++|+|.++..+.
T Consensus 168 g~~~veME~a~~~~~a~~~~~~~~~ir~I 196 (230)
T 3bl6_A 168 NAMAVEMEATAIAQTCYQFNVPFVVVRAV 196 (230)
T ss_dssp TEEEEESSHHHHHHHHHHHTCCEEEEEEE
T ss_pred CcEEEEchHHHHHHHHHHcCCCEEEEEEe
Confidence 57788887777888899999998877654
No 259
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=21.22 E-value=1.2e+02 Score=16.78 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=17.7
Q ss_pred CeeEEEecCCcccHHHHHHHhCC---ceEEEcc
Q 039753 85 NITYVIADGNVEQGIKVAEKLNI---QSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~t 114 (125)
.+..+..|. .-..++++++|| |.++|+-
T Consensus 55 ~~~~~~vd~--~~~~~l~~~~~v~~~Pt~~~~~ 85 (109)
T 3f3q_A 55 QADFYKLDV--DELGDVAQKNEVSAMPTLLLFK 85 (109)
T ss_dssp TSEEEEEET--TTCHHHHHHTTCCSSSEEEEEE
T ss_pred CCEEEEEEC--CCCHHHHHHcCCCccCEEEEEE
Confidence 345555554 345678999875 7777753
No 260
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.14 E-value=1.5e+02 Score=19.75 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=18.5
Q ss_pred CeeEEEecCCcc----cHHHHHHHhCCceEEEcc
Q 039753 85 NITYVIADGNVE----QGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 85 ~~~~iI~D~~~~----w~~~vA~~lgIP~~~f~t 114 (125)
.++.||...... -..+-+++.|||.+.+..
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 58 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESS
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECC
Confidence 567766654432 234456677999887754
No 261
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=21.05 E-value=58 Score=18.88 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=11.5
Q ss_pred cCCcccHHHHHHHhCCceEE
Q 039753 92 DGNVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 92 D~~~~w~~~vA~~lgIP~~~ 111 (125)
|..---..++|++.|||.+-
T Consensus 41 ~~~A~~I~~~A~e~gVPi~e 60 (97)
T 3t7y_A 41 NLRAKRIIAEAEKYGVPIMR 60 (97)
T ss_dssp HHHHHHHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHHHHcCCeEEE
Confidence 33333455677777777653
No 262
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.00 E-value=85 Score=17.96 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=7.6
Q ss_pred CeeEEEecCCcc
Q 039753 85 NITYVIADGNVE 96 (125)
Q Consensus 85 ~~~~iI~D~~~~ 96 (125)
+|++||.|..++
T Consensus 50 ~~dlvi~D~~l~ 61 (140)
T 3lua_A 50 SITLIIMDIAFP 61 (140)
T ss_dssp CCSEEEECSCSS
T ss_pred CCcEEEEeCCCC
Confidence 466666666655
No 263
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=20.91 E-value=1.4e+02 Score=17.72 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhcCCCCCeeEEEecCCccc--HHHHHH----HhCCceEEEcc
Q 039753 69 KREELIKDSNARETHENITYVIADGNVEQ--GIKVAE----KLNIQSAAFWP 114 (125)
Q Consensus 69 ~~~~~l~~l~~~~~~~~~~~iI~D~~~~w--~~~vA~----~lgIP~~~f~t 114 (125)
..+++++.+.. .+|++||.|.-++. +.++.+ ...+|.+++..
T Consensus 59 ~~~~al~~l~~----~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 59 DGLEAVEKAIE----LKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp SHHHHHHHHHH----HCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEES
T ss_pred CHHHHHHHhcc----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEec
Confidence 34555555543 36899999987753 444444 34566665544
No 264
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=20.85 E-value=1.4e+02 Score=20.95 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=19.5
Q ss_pred CCeeEEEe--cC--------CcccHHHHHHHhCCceEE
Q 039753 84 ENITYVIA--DG--------NVEQGIKVAEKLNIQSAA 111 (125)
Q Consensus 84 ~~~~~iI~--D~--------~~~w~~~vA~~lgIP~~~ 111 (125)
..+.+||+ |- ..+-..+.|+++|||.+.
T Consensus 26 ~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~ 63 (314)
T 3tqq_A 26 HRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ 63 (314)
T ss_dssp SEEEEEECCCC----------CCHHHHHHHHTTCCEEC
T ss_pred CeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC
Confidence 35778887 42 234577999999999653
No 265
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=20.80 E-value=1.7e+02 Score=18.49 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=21.4
Q ss_pred CCeeEEEecCCcccHHHHHHHhCC---ceEEEc
Q 039753 84 ENITYVIADGNVEQGIKVAEKLNI---QSAAFW 113 (125)
Q Consensus 84 ~~~~~iI~D~~~~w~~~vA~~lgI---P~~~f~ 113 (125)
+.+..+..|.--+-..++|+++|| |.+.++
T Consensus 53 ~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~ 85 (226)
T 1a8l_A 53 DKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT 85 (226)
T ss_dssp TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEE
T ss_pred CceEEEEEeCCCcccHHHHHHcCCCcCceEEEE
Confidence 468888888543225789999986 777776
No 266
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=20.80 E-value=2.6e+02 Score=20.68 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~ 113 (125)
...+..++.+...-.+++.++.+....+ .+++.|+.+.-. .|.+-+|+-+|+|...--
T Consensus 375 ~~~l~RAvlEgia~~~~~~~~~l~~~~g-~~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~ 436 (501)
T 3g25_A 375 KEHFIRATLESLCYQTRDVMEAMSKDSG-IDVQSLRVDGGAVKNNFIMQFQADIVNTSVERPE 436 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEecchhcCHHHHHHHHHHhCCceEecC
Confidence 4445555655555667777777754212 456667776644 399999999999987654
No 267
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.79 E-value=1.3e+02 Score=17.09 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=22.8
Q ss_pred HHHHHHhhhcCCCCCeeEEEecCCcc--cHHHHHHHh-------CCceEEEcc
Q 039753 71 EELIKDSNARETHENITYVIADGNVE--QGIKVAEKL-------NIQSAAFWP 114 (125)
Q Consensus 71 ~~~l~~l~~~~~~~~~~~iI~D~~~~--w~~~vA~~l-------gIP~~~f~t 114 (125)
++.++.+.. .++++||.|.-++ -+.++.+++ ++|.+++..
T Consensus 41 ~~a~~~l~~----~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 41 GQCIDLLKK----GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHHHHHHHT----CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred HHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 444444433 3689999998764 344555443 356655543
No 268
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.78 E-value=1.3e+02 Score=17.04 Aligned_cols=12 Identities=17% Similarity=-0.008 Sum_probs=7.4
Q ss_pred CeeEEEecCCcc
Q 039753 85 NITYVIADGNVE 96 (125)
Q Consensus 85 ~~~~iI~D~~~~ 96 (125)
+|++||.|.-++
T Consensus 54 ~~dlii~d~~l~ 65 (143)
T 3cnb_A 54 KPDVVMLDLMMV 65 (143)
T ss_dssp CCSEEEEETTCT
T ss_pred CCCEEEEecccC
Confidence 466777776553
No 269
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=20.70 E-value=62 Score=23.79 Aligned_cols=34 Identities=6% Similarity=-0.034 Sum_probs=24.8
Q ss_pred CeeEEEecCCcccHHHHHHHhCCceEEE-cchhHH
Q 039753 85 NITYVIADGNVEQGIKVAEKLNIQSAAF-WPAAAA 118 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~lgIP~~~f-~t~~a~ 118 (125)
...|+++-.....+..+.+++|+|.+.+ ++.+..
T Consensus 243 ~~ni~~~~~~~~~A~~Le~~~giP~~~~~~P~G~~ 277 (460)
T 2xdq_A 243 YYVAGVNPFLSRTATTLIRRRKCQLITAPFPIGPD 277 (460)
T ss_dssp CEEEESSTTCHHHHHHHHHTTCCEEECCCCSBHHH
T ss_pred cEEEEcCHhHHHHHHHHHHHcCCCceecCcCccHH
Confidence 3566766666666778889999999987 466544
No 270
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.54 E-value=37 Score=19.06 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=11.1
Q ss_pred cHHHHHHHhCCce
Q 039753 97 QGIKVAEKLNIQS 109 (125)
Q Consensus 97 w~~~vA~~lgIP~ 109 (125)
-+.++|+++||+.
T Consensus 32 sa~eLAk~LgiSk 44 (82)
T 1oyi_A 32 TAAQLTRQLNMEK 44 (82)
T ss_dssp EHHHHHHHSSSCH
T ss_pred CHHHHHHHHCcCH
Confidence 4899999999974
No 271
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=20.52 E-value=1.6e+02 Score=20.53 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=22.2
Q ss_pred CCeeEEEecC-------CcccHHHHHHHhCCceEEEc
Q 039753 84 ENITYVIADG-------NVEQGIKVAEKLNIQSAAFW 113 (125)
Q Consensus 84 ~~~~~iI~D~-------~~~w~~~vA~~lgIP~~~f~ 113 (125)
..+.+||++. ..+-..+.|+++|||.+..-
T Consensus 24 ~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~ 60 (305)
T 2bln_A 24 YEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD 60 (305)
T ss_dssp CEEEEEECCCC------CCCCHHHHHHHHTCCEECCS
T ss_pred CcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCC
Confidence 4678888863 22458899999999987653
No 272
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=20.48 E-value=58 Score=22.68 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=23.0
Q ss_pred CCeeEEEecCCc---cc----------HHHHHHHhCCceEEEcchh
Q 039753 84 ENITYVIADGNV---EQ----------GIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 84 ~~~~~iI~D~~~---~w----------~~~vA~~lgIP~~~f~t~~ 116 (125)
.++..+..|.-. ++ +.+.|.++|+|.+.|.-++
T Consensus 121 ~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsg 166 (285)
T 2f9i_B 121 MKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASG 166 (285)
T ss_dssp EEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred EEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456677777521 22 5678899999999997654
No 273
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=20.34 E-value=2.8e+02 Score=20.81 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhcCCCCCeeEEEecCCc----ccHHHHHHHhCCceEEEcc
Q 039753 55 LGKLTESLMRVMPRKREELIKDSNARETHENITYVIADGNV----EQGIKVAEKLNIQSAAFWP 114 (125)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~iI~D~~~----~w~~~vA~~lgIP~~~f~t 114 (125)
...++.++.+...-.+++.++.+...+ .+++-|+.+.-. .|.+-.|+-+|+|...--.
T Consensus 406 ~~~l~RAvlEgia~~~r~~~~~l~~~g--~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~ 467 (538)
T 4bc3_A 406 GDVEVRALIEGQFMAKRIHAEGLGYRV--MSKTKILATGGASHNREILQVLADVFDAPVYVIDT 467 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC--CTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCeEEEEcchhcCHHHHHHHHHHhCCceEecCC
Confidence 344555555555556677777765432 345556655533 3999999999999887543
No 274
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*
Probab=20.25 E-value=58 Score=21.19 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=23.3
Q ss_pred eEEEecCCcccHHHHHHHhCCceEEEcch
Q 039753 87 TYVIADGNVEQGIKVAEKLNIQSAAFWPA 115 (125)
Q Consensus 87 ~~iI~D~~~~w~~~vA~~lgIP~~~f~t~ 115 (125)
.+...||=..-...+|+++|+|.++..+.
T Consensus 167 g~~~veME~aa~~~~a~~~~~~~~~ir~I 195 (230)
T 1zos_A 167 EVLAVEMEGAAIAQAAHTLNLPVLVIRAM 195 (230)
T ss_dssp TEEEEESSHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCcEehhhHHHHHHHHHHcCCCEEEEEEe
Confidence 57788887777888899999998877654
No 275
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=20.16 E-value=64 Score=21.38 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.0
Q ss_pred HHHHHHHhCCceEEEcchh
Q 039753 98 GIKVAEKLNIQSAAFWPAA 116 (125)
Q Consensus 98 ~~~vA~~lgIP~~~f~t~~ 116 (125)
..++|+++|.+.+++++..
T Consensus 94 ~i~~A~~lGa~~v~~~~g~ 112 (285)
T 1qtw_A 94 EMQRCEQLGLSLLNFHPGS 112 (285)
T ss_dssp HHHHHHHTTCCEEEECCCB
T ss_pred HHHHHHHcCCCEEEECcCC
Confidence 5778999999999998753
No 276
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=20.11 E-value=1.4e+02 Score=22.53 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=20.2
Q ss_pred CeeEEEecCCcccHHHHHHHh-------CCceEEE
Q 039753 85 NITYVIADGNVEQGIKVAEKL-------NIQSAAF 112 (125)
Q Consensus 85 ~~~~iI~D~~~~w~~~vA~~l-------gIP~~~f 112 (125)
+|+.+|.+. +...+|+++ |||.+.+
T Consensus 434 ~pDLiig~~---~~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 434 QPDFMIGNS---YGKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp CCSEEEECG---GGHHHHHHHHHHCGGGCCCEEEC
T ss_pred CCCEEEECc---chHHHHHHhhcccccCCCCeEEe
Confidence 588888875 578899999 9999754
No 277
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.08 E-value=1.2e+02 Score=16.30 Aligned_cols=12 Identities=0% Similarity=-0.161 Sum_probs=7.5
Q ss_pred CeeEEEecCCcc
Q 039753 85 NITYVIADGNVE 96 (125)
Q Consensus 85 ~~~~iI~D~~~~ 96 (125)
+|+++|.|..++
T Consensus 45 ~~dlii~d~~~~ 56 (119)
T 2j48_A 45 QPIVILMAWPPP 56 (119)
T ss_dssp CCSEEEEECSTT
T ss_pred CCCEEEEecCCC
Confidence 466777776553
Done!