Query 039754
Match_columns 147
No_of_seqs 124 out of 586
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 99.7 4.1E-16 8.9E-21 134.4 9.0 93 40-143 33-138 (345)
2 PF00544 Pec_lyase_C: Pectate 99.3 1.4E-12 3.1E-17 104.6 3.3 57 83-142 1-58 (200)
3 smart00656 Amb_all Amb_all dom 99.0 6.3E-10 1.4E-14 88.8 5.5 45 99-144 10-54 (190)
4 TIGR03805 beta_helix_1 paralle 92.9 0.34 7.5E-06 41.5 6.5 38 76-114 2-41 (314)
5 PLN02480 Probable pectinestera 92.1 0.87 1.9E-05 40.2 8.1 69 72-143 60-145 (343)
6 PLN02197 pectinesterase 90.3 2.1 4.6E-05 40.3 9.2 105 26-142 243-376 (588)
7 PLN02176 putative pectinestera 88.9 3.3 7.1E-05 36.6 8.8 68 73-143 52-135 (340)
8 PLN02304 probable pectinestera 83.1 5.9 0.00013 35.6 7.6 69 73-143 88-175 (379)
9 PF01696 Adeno_E1B_55K: Adenov 83.1 6.2 0.00013 35.7 7.7 66 75-142 57-133 (386)
10 PLN02416 probable pectinestera 82.7 6.2 0.00014 36.8 7.8 66 74-142 244-329 (541)
11 PLN02432 putative pectinestera 78.5 10 0.00022 32.9 7.2 70 72-143 23-107 (293)
12 PLN02773 pectinesterase 76.9 16 0.00036 31.9 8.1 70 72-143 17-115 (317)
13 PLN02682 pectinesterase family 76.7 13 0.00028 33.3 7.6 69 73-143 83-176 (369)
14 PLN02170 probable pectinestera 76.4 13 0.00028 34.9 7.7 69 73-143 238-326 (529)
15 PLN02665 pectinesterase family 74.7 16 0.00035 32.6 7.7 70 72-143 80-167 (366)
16 PLN02634 probable pectinestera 73.9 15 0.00033 32.8 7.2 69 73-143 69-162 (359)
17 PLN02506 putative pectinestera 71.0 19 0.0004 33.8 7.4 68 73-142 245-331 (537)
18 PLN02497 probable pectinestera 69.8 28 0.0006 30.8 7.9 69 73-143 45-128 (331)
19 PF01095 Pectinesterase: Pecti 69.3 23 0.0005 30.4 7.2 68 72-142 12-99 (298)
20 PLN02301 pectinesterase/pectin 68.9 20 0.00043 33.7 7.1 68 74-143 250-336 (548)
21 PLN02933 Probable pectinestera 67.8 24 0.00053 33.1 7.5 68 74-143 232-318 (530)
22 PLN02916 pectinesterase family 63.1 30 0.00065 32.3 7.1 69 73-143 200-290 (502)
23 PLN02484 probable pectinestera 63.0 26 0.00055 33.2 6.7 71 72-143 284-373 (587)
24 PF14592 Chondroitinas_B: Chon 59.6 30 0.00065 31.7 6.3 65 75-143 7-80 (425)
25 PRK10531 acyl-CoA thioesterase 57.8 68 0.0015 29.4 8.3 45 73-119 95-150 (422)
26 PLN02671 pectinesterase 57.0 74 0.0016 28.5 8.2 68 73-142 72-166 (359)
27 PLN02708 Probable pectinestera 56.0 50 0.0011 31.0 7.3 69 73-143 254-343 (553)
28 PLN02201 probable pectinestera 55.9 48 0.001 31.0 7.1 68 74-143 220-306 (520)
29 PLN02745 Putative pectinestera 55.1 55 0.0012 31.1 7.5 68 73-142 298-384 (596)
30 TIGR03805 beta_helix_1 paralle 54.5 54 0.0012 28.1 6.8 20 121-140 77-96 (314)
31 PF12708 Pectate_lyase_3: Pect 53.8 36 0.00079 25.8 5.2 39 75-114 21-62 (225)
32 PLN02488 probable pectinestera 53.6 44 0.00096 31.3 6.5 68 74-143 211-297 (509)
33 PLN02995 Probable pectinestera 53.1 49 0.0011 31.0 6.7 68 74-143 237-325 (539)
34 PLN02314 pectinesterase 52.4 59 0.0013 30.8 7.2 68 73-142 291-377 (586)
35 PF07602 DUF1565: Protein of u 52.0 68 0.0015 27.2 6.9 17 126-142 93-109 (246)
36 PLN02713 Probable pectinestera 51.6 78 0.0017 29.9 7.8 67 74-142 264-352 (566)
37 PLN02990 Probable pectinestera 51.5 60 0.0013 30.7 7.1 68 74-143 273-360 (572)
38 PLN02313 Pectinesterase/pectin 49.1 50 0.0011 31.2 6.2 68 74-143 289-375 (587)
39 PLN03043 Probable pectinestera 48.3 1E+02 0.0022 29.0 8.0 69 72-142 235-325 (538)
40 PLN02217 probable pectinestera 47.4 76 0.0016 30.7 7.2 68 74-143 264-350 (670)
41 PLN03010 polygalacturonase 46.8 41 0.00088 30.4 5.0 18 124-141 160-177 (409)
42 PLN02468 putative pectinestera 46.3 78 0.0017 29.8 7.0 67 74-142 272-357 (565)
43 PLN03003 Probable polygalactur 44.3 35 0.00076 31.4 4.3 51 84-141 104-158 (456)
44 cd06401 PB1_TFG The PB1 domain 43.9 25 0.00054 25.3 2.7 26 53-88 52-77 (81)
45 PLN02155 polygalacturonase 39.7 75 0.0016 28.5 5.6 19 123-141 147-165 (394)
46 COG2335 Secreted and surface p 39.4 30 0.00065 28.5 2.8 71 56-127 81-156 (187)
47 KOG1777 Putative Zn-finger pro 38.3 30 0.00065 32.6 2.9 52 88-142 458-513 (625)
48 TIGR03808 RR_plus_rpt_1 twin-a 36.3 1.4E+02 0.0031 27.7 6.9 42 99-140 81-125 (455)
49 PF04677 CwfJ_C_1: Protein sim 31.9 25 0.00054 26.4 1.1 76 17-92 7-94 (121)
50 TIGR03808 RR_plus_rpt_1 twin-a 31.0 48 0.001 30.7 3.0 34 108-142 123-156 (455)
51 PF12708 Pectate_lyase_3: Pect 29.2 46 0.00099 25.3 2.2 24 121-144 199-222 (225)
52 TIGR01451 B_ant_repeat conserv 27.4 1.4E+02 0.003 19.0 4.0 37 106-146 4-40 (53)
53 PF07822 Toxin_13: Neurotoxin 26.8 20 0.00044 23.8 -0.1 19 20-38 20-38 (55)
54 PLN02188 polygalacturonase/gly 26.8 68 0.0015 28.8 3.2 33 108-141 131-175 (404)
55 PF00295 Glyco_hydro_28: Glyco 24.3 2E+02 0.0043 24.6 5.5 20 121-140 142-161 (326)
56 KOG0389 SNF2 family DNA-depend 20.2 46 0.001 33.3 0.9 66 77-143 771-862 (941)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.1e-16 Score=134.44 Aligned_cols=93 Identities=28% Similarity=0.432 Sum_probs=84.6
Q ss_pred CCccccc-------CCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC------ceeecCCC
Q 039754 40 CVPGFGH-------KITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS------QELIMTND 106 (147)
Q Consensus 40 ~a~GfG~-------~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~------~~L~v~s~ 106 (147)
..+|||. +||||.||++++|++.+| |..+++..+|.++|+-++|+|.++ .+|++.||
T Consensus 33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sN 102 (345)
T COG3866 33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSN 102 (345)
T ss_pred cccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccc
Confidence 3677775 899999999999999998 888999999996666789999998 57888999
Q ss_pred ceEeccCCeeEEecCCcEEEeccCcEEEEceEEeeee
Q 039754 107 KTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIF 143 (147)
Q Consensus 107 kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~ 143 (147)
|||.|.+++..|. |.||.|+++.|||||||+|++..
T Consensus 103 kTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~ 138 (345)
T COG3866 103 KTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFY 138 (345)
T ss_pred cEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeec
Confidence 9999999999999 99999999999999999999876
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=99.29 E-value=1.4e-12 Score=104.62 Aligned_cols=57 Identities=30% Similarity=0.416 Sum_probs=50.9
Q ss_pred CCeEEEEeeceEEEeCceeecCCCceEeccCCeeEEecCCcEEEe-ccCcEEEEceEEeee
Q 039754 83 GPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQ-HVKNVILHGHSIHYI 142 (147)
Q Consensus 83 ~P~~IvF~vsG~I~L~~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~-~~sNVIIrnL~I~~v 142 (147)
+|+ ||+++|+|+++.+|.|.|||||+|+|+++.|. +.|+.+. +++|||||||+|+++
T Consensus 1 ~~~--ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~ 58 (200)
T PF00544_consen 1 EPL--IIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNV 58 (200)
T ss_dssp S-E--EEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECE
T ss_pred CcE--EEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEec
Confidence 355 55689999999999999999999999999999 9999997 999999999999985
No 3
>smart00656 Amb_all Amb_all domain.
Probab=98.99 E-value=6.3e-10 Score=88.82 Aligned_cols=45 Identities=42% Similarity=0.705 Sum_probs=42.1
Q ss_pred ceeecCCCceEeccCCeeEEecCCcEEEeccCcEEEEceEEeeeec
Q 039754 99 QELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP 144 (147)
Q Consensus 99 ~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~~ 144 (147)
.+|.|.|||||+|+|+++.|. |.||.+.+++|||||||+|++..+
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~ 54 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKP 54 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCcc
Confidence 578899999999999999998 999999999999999999998765
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=92.90 E-value=0.34 Score=41.51 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHhcCCCe-EEEEeeceEEEeCceeecC-CCceEeccCC
Q 039754 76 CHAVIQNGPL-WIIFARDMHIKLSQELIMT-NDKTIDARGA 114 (147)
Q Consensus 76 r~Av~~~~P~-~IvF~vsG~I~L~~~L~v~-s~kTI~G~ga 114 (147)
..|+.+..|- +|++ -.|+-+++..|.|. +++||.|.+.
T Consensus 2 Q~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~ 41 (314)
T TIGR03805 2 QEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGM 41 (314)
T ss_pred HhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCC
Confidence 4555554442 3333 46777776667665 6777777664
No 5
>PLN02480 Probable pectinesterase
Probab=92.07 E-value=0.87 Score=40.18 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=46.0
Q ss_pred CchHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec---------CCcEEEeccCcEEE
Q 039754 72 PGTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY---------GAGIMIQHVKNVIL 134 (147)
Q Consensus 72 ~GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~---------G~Gi~i~~~sNVII 134 (147)
--|+..||.. +..+++||=..|+-+ +.|.| ++|+||.|.+.+ ..|.. +.-|++ .++|+++
T Consensus 60 f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a 136 (343)
T PLN02480 60 FTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVA 136 (343)
T ss_pred cccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEE
Confidence 4489999865 223566665678766 56777 467899998743 44441 112333 6899999
Q ss_pred EceEEeeee
Q 039754 135 HGHSIHYIF 143 (147)
Q Consensus 135 rnL~I~~v~ 143 (147)
+||.|+|--
T Consensus 137 ~nLTf~Nta 145 (343)
T PLN02480 137 FGISIRNDA 145 (343)
T ss_pred EeeEEEecC
Confidence 999999873
No 6
>PLN02197 pectinesterase
Probab=90.25 E-value=2.1 Score=40.33 Aligned_cols=105 Identities=23% Similarity=0.319 Sum_probs=63.4
Q ss_pred CCcchhcc--ccCccCCCcccccCCCCCCCCcE---EEEcCCCCCCCCCCCCc---hHHHHHhc----CCCeEEEEeece
Q 039754 26 CWKDWANY--RPKLADCVPGFGHKITGGQKGPI---YIVTDSSDNDFINSKPG---TLCHAVIQ----NGPLWIIFARDM 93 (147)
Q Consensus 26 ~~~~W~~~--r~~la~~a~GfG~~ttGGrgG~v---y~VT~l~d~d~~~p~~G---sLr~Av~~----~~P~~IvF~vsG 93 (147)
..|.|-.. |+-|. +.+.|.++-||.++.+ ++|-- | +.| |+.+||.. +..++|||=..|
T Consensus 243 ~~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G 312 (588)
T PLN02197 243 GIPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAG 312 (588)
T ss_pred CCCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCc
Confidence 46888654 44443 3455566666665543 33332 2 444 78889854 334666666788
Q ss_pred EEEeCceeecC---CCceEeccCCe-eEEecC------CcE------E-EeccCcEEEEceEEeee
Q 039754 94 HIKLSQELIMT---NDKTIDARGAD-VHIAYG------AGI------M-IQHVKNVILHGHSIHYI 142 (147)
Q Consensus 94 ~I~L~~~L~v~---s~kTI~G~ga~-v~I~~G------~Gi------~-i~~~sNVIIrnL~I~~v 142 (147)
+-+ +.|.|. .|+|+.|.|.+ ..|+.. .|. + ...++++|.+||.|.|-
T Consensus 313 vY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Nt 376 (588)
T PLN02197 313 IYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNT 376 (588)
T ss_pred eEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeC
Confidence 854 556663 58899998864 333310 121 1 23589999999999985
No 7
>PLN02176 putative pectinesterase
Probab=88.89 E-value=3.3 Score=36.63 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=45.0
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec-------CC-cEEEeccCcEEEEc
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY-------GA-GIMIQHVKNVILHG 136 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~-------G~-Gi~i~~~sNVIIrn 136 (147)
-|+.+||.. +..+++||-..|+-+ +.|.| .+|+|+.|.|.+ ..|+- +. -++ ..++|++.+|
T Consensus 52 ~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~-v~a~~F~a~n 128 (340)
T PLN02176 52 KTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFT-SYASNIIITG 128 (340)
T ss_pred cCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEE-EECCCEEEEe
Confidence 378888854 223556665678766 55666 368999999864 33321 11 222 3689999999
Q ss_pred eEEeeee
Q 039754 137 HSIHYIF 143 (147)
Q Consensus 137 L~I~~v~ 143 (147)
|.|.|--
T Consensus 129 lT~~Nt~ 135 (340)
T PLN02176 129 ITFKNTY 135 (340)
T ss_pred eEEEeCC
Confidence 9999864
No 8
>PLN02304 probable pectinesterase
Probab=83.14 E-value=5.9 Score=35.61 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=45.2
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCee-EEecC-----------CcEEEeccCcEE
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGADV-HIAYG-----------AGIMIQHVKNVI 133 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~v-~I~~G-----------~Gi~i~~~sNVI 133 (147)
-|+.+||.. +..+++||=..|+-+ ++|.| ++|+|+.|.|.+- .|+.. ..-....++|++
T Consensus 88 ~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~ 165 (379)
T PLN02304 88 TTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFI 165 (379)
T ss_pred cCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeE
Confidence 378888854 233566665678654 66777 4789999998642 23311 111123589999
Q ss_pred EEceEEeeee
Q 039754 134 LHGHSIHYIF 143 (147)
Q Consensus 134 IrnL~I~~v~ 143 (147)
.+||.|.|--
T Consensus 166 a~nITf~Nta 175 (379)
T PLN02304 166 AKNISFMNVA 175 (379)
T ss_pred EEeeEEEecC
Confidence 9999999864
No 9
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=83.07 E-value=6.2 Score=35.65 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=48.7
Q ss_pred HHHHHhcCCCeEEEEeeceEEEeCceeecCCCceEeccCCeeEEe--cCCcEEEe---------ccCcEEEEceEEeee
Q 039754 75 LCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIA--YGAGIMIQ---------HVKNVILHGHSIHYI 142 (147)
Q Consensus 75 Lr~Av~~~~P~~IvF~vsG~I~L~~~L~v~s~kTI~G~ga~v~I~--~G~Gi~i~---------~~sNVIIrnL~I~~v 142 (147)
|..|+.+-.+. -.+=+-+-++++.+.|.+--+|+|+||-+.|. ++.+|.+. +..+|-+.|++|..-
T Consensus 57 le~~I~~haKV--aL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~ 133 (386)
T PF01696_consen 57 LEEAIRQHAKV--ALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR 133 (386)
T ss_pred HHHHHHhcCEE--EeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC
Confidence 89998775532 23445667788999999999999999988884 24446654 467888888888643
No 10
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=82.70 E-value=6.2 Score=36.84 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=45.4
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCee-EEecC----Cc--------EEEeccCcEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGADV-HIAYG----AG--------IMIQHVKNVI 133 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~v-~I~~G----~G--------i~i~~~sNVI 133 (147)
|+.+||.. +..++|||=..|+-+ +.|.| .+|+||.|.|.+- .|+.+ .| +.+ .++|++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 77788854 345777777788764 56666 3689999999743 34311 12 222 589999
Q ss_pred EEceEEeee
Q 039754 134 LHGHSIHYI 142 (147)
Q Consensus 134 IrnL~I~~v 142 (147)
.+||.|.|-
T Consensus 321 a~nitf~Nt 329 (541)
T PLN02416 321 ARDITIENT 329 (541)
T ss_pred EEeeEEEEC
Confidence 999999975
No 11
>PLN02432 putative pectinesterase
Probab=78.48 E-value=10 Score=32.86 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=43.5
Q ss_pred CchHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEecCCcE-------EEeccCcEEEEc
Q 039754 72 PGTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAYGAGI-------MIQHVKNVILHG 136 (147)
Q Consensus 72 ~GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~G~Gi-------~i~~~sNVIIrn 136 (147)
--|+..||.. +..+++||=..|+- .+.|.| .+|+|+.|.+.. ..|+...+. ....++|++.+|
T Consensus 23 f~TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~a~~f~a~n 100 (293)
T PLN02432 23 FRKIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVLASDFVGRF 100 (293)
T ss_pred ccCHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEECCCeEEEe
Confidence 3467778754 22345555567865 456666 468999998753 333211111 122679999999
Q ss_pred eEEeeee
Q 039754 137 HSIHYIF 143 (147)
Q Consensus 137 L~I~~v~ 143 (147)
|.|.+--
T Consensus 101 lt~~Nt~ 107 (293)
T PLN02432 101 LTIQNTF 107 (293)
T ss_pred eEEEeCC
Confidence 9999753
No 12
>PLN02773 pectinesterase
Probab=76.89 E-value=16 Score=31.90 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=43.9
Q ss_pred CchHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEecC----------------Cc----
Q 039754 72 PGTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAYG----------------AG---- 123 (147)
Q Consensus 72 ~GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~G----------------~G---- 123 (147)
--|+..||.. +..+++||=..|+-+ +.|.| ..|+||.|.+.. ..|+.+ .|
T Consensus 17 f~TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~S 94 (317)
T PLN02773 17 YCTVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGC 94 (317)
T ss_pred ccCHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCc
Confidence 3477788754 223555565678654 66777 357999998763 333311 01
Q ss_pred -EEEeccCcEEEEceEEeeee
Q 039754 124 -IMIQHVKNVILHGHSIHYIF 143 (147)
Q Consensus 124 -i~i~~~sNVIIrnL~I~~v~ 143 (147)
-.+..++|++.+||.|.+-.
T Consensus 95 aTv~v~a~~f~a~nlT~~Nt~ 115 (317)
T PLN02773 95 GTVIVEGEDFIAENITFENSA 115 (317)
T ss_pred eEEEEECCCeEEEeeEEEeCC
Confidence 11236899999999999864
No 13
>PLN02682 pectinesterase family protein
Probab=76.66 E-value=13 Score=33.31 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=43.9
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec----------CCc-------EEEe
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY----------GAG-------IMIQ 127 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~----------G~G-------i~i~ 127 (147)
-|...||.. +..+++||=..|+-+ +.|.| .+|+||.|.|.+ ..|+. |.. -...
T Consensus 83 ~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v 160 (369)
T PLN02682 83 TTIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV 160 (369)
T ss_pred cCHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE
Confidence 378888854 223455554678654 66666 478999999864 33331 110 1123
Q ss_pred ccCcEEEEceEEeeee
Q 039754 128 HVKNVILHGHSIHYIF 143 (147)
Q Consensus 128 ~~sNVIIrnL~I~~v~ 143 (147)
.++|++.+||.|.|--
T Consensus 161 ~a~~F~a~nlTf~Nt~ 176 (369)
T PLN02682 161 NSPYFIAKNITFKNTA 176 (369)
T ss_pred ECCCeEEEeeEEEccc
Confidence 6889999999999854
No 14
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=76.37 E-value=13 Score=34.87 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=45.7
Q ss_pred chHHHHHhc-----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec----CCcE-------EEeccCcE
Q 039754 73 GTLCHAVIQ-----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY----GAGI-------MIQHVKNV 132 (147)
Q Consensus 73 GsLr~Av~~-----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~----G~Gi-------~i~~~sNV 132 (147)
-|+.+||.. +..+++||=..|+-+ +.|.| .+|+|+.|.|.+ ..|+. +.|. ....++|+
T Consensus 238 ~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F 315 (529)
T PLN02170 238 KTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGF 315 (529)
T ss_pred hhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCe
Confidence 377788853 223666666788854 55666 368999999874 34431 1122 12368999
Q ss_pred EEEceEEeeee
Q 039754 133 ILHGHSIHYIF 143 (147)
Q Consensus 133 IIrnL~I~~v~ 143 (147)
+.+||.|+|--
T Consensus 316 ~a~nitf~Nta 326 (529)
T PLN02170 316 IARDITFVNSA 326 (529)
T ss_pred EEEeeEEEecC
Confidence 99999999863
No 15
>PLN02665 pectinesterase family protein
Probab=74.67 E-value=16 Score=32.60 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=45.6
Q ss_pred CchHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEecC----------CcEEEeccCcEE
Q 039754 72 PGTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAYG----------AGIMIQHVKNVI 133 (147)
Q Consensus 72 ~GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~G----------~Gi~i~~~sNVI 133 (147)
--|+.+|+.. +..++|||=..|+-+ +.|.| ++|+|+.|.+.. ..|+.+ .--....++|++
T Consensus 80 f~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~a~~F~ 157 (366)
T PLN02665 80 FKTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFM 157 (366)
T ss_pred ccCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEECCCeE
Confidence 3488888854 233566666778755 66666 368899998763 333311 111123689999
Q ss_pred EEceEEeeee
Q 039754 134 LHGHSIHYIF 143 (147)
Q Consensus 134 IrnL~I~~v~ 143 (147)
.+||.|.|--
T Consensus 158 a~nitf~Nta 167 (366)
T PLN02665 158 AANIIIKNSA 167 (366)
T ss_pred EEeeEEEeCC
Confidence 9999999864
No 16
>PLN02634 probable pectinesterase
Probab=73.92 E-value=15 Score=32.82 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=43.5
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCeeEEe-----------cCCcE-------EEe
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGADVHIA-----------YGAGI-------MIQ 127 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~v~I~-----------~G~Gi-------~i~ 127 (147)
-|+..||.. +..+++||=..|+-+ +.|.| .+|+|+.|.|.+..+. +|..+ ...
T Consensus 69 ~TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V 146 (359)
T PLN02634 69 RSVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV 146 (359)
T ss_pred cCHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE
Confidence 367778754 223455555678744 55666 4689999998754332 01111 122
Q ss_pred ccCcEEEEceEEeeee
Q 039754 128 HVKNVILHGHSIHYIF 143 (147)
Q Consensus 128 ~~sNVIIrnL~I~~v~ 143 (147)
.++|++.+||.|.|--
T Consensus 147 ~a~~F~a~niTf~Nta 162 (359)
T PLN02634 147 YANYFTARNISFKNTA 162 (359)
T ss_pred ECCCeEEEeCeEEeCC
Confidence 6789999999999875
No 17
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=71.00 E-value=19 Score=33.77 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=43.6
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEecC----CcE-------EEeccCcEE
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAYG----AGI-------MIQHVKNVI 133 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~G----~Gi-------~i~~~sNVI 133 (147)
-|+.+||.. +..+++||=..|+-+ +.|.| ..|+|+.|.|.+ ..|+.+ .|. ....++|++
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~ 322 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFI 322 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeE
Confidence 467778754 334666766788654 44555 368899998864 333311 121 223689999
Q ss_pred EEceEEeee
Q 039754 134 LHGHSIHYI 142 (147)
Q Consensus 134 IrnL~I~~v 142 (147)
.+||.|.|-
T Consensus 323 a~nit~~Nt 331 (537)
T PLN02506 323 ARDITFRNT 331 (537)
T ss_pred EEeeEEEeC
Confidence 999999875
No 18
>PLN02497 probable pectinesterase
Probab=69.76 E-value=28 Score=30.76 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=43.9
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEe--c-----CCcEEEeccCcEEEEce
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIA--Y-----GAGIMIQHVKNVILHGH 137 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~--~-----G~Gi~i~~~sNVIIrnL 137 (147)
-|+..||.. +..+++||=..|+- ++.|.| ++++|+.|.|.+ ..|+ + +..-....++|++.+||
T Consensus 45 ~TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~a~~f~a~nl 122 (331)
T PLN02497 45 TTIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKSI 122 (331)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEecCCeEEEcc
Confidence 377778754 23355555567865 455666 468999998863 2232 1 11222346899999999
Q ss_pred EEeeee
Q 039754 138 SIHYIF 143 (147)
Q Consensus 138 ~I~~v~ 143 (147)
.|.|--
T Consensus 123 T~~Nt~ 128 (331)
T PLN02497 123 TFANSY 128 (331)
T ss_pred EEEeCC
Confidence 999864
No 19
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=69.33 E-value=23 Score=30.41 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=39.4
Q ss_pred CchHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCe-eEEec------------CCcEEEeccCc
Q 039754 72 PGTLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGAD-VHIAY------------GAGIMIQHVKN 131 (147)
Q Consensus 72 ~GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~-v~I~~------------G~Gi~i~~~sN 131 (147)
--|+..||.. +..+++||=..|+-+ +.|.|. ++++|.|.+.. ..|+. .+-|.+ .++|
T Consensus 12 f~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~ 88 (298)
T PF01095_consen 12 FTTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADD 88 (298)
T ss_dssp BSSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT
T ss_pred ccCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-cccc
Confidence 3467788764 234566666788766 556664 58999999874 33431 111222 5899
Q ss_pred EEEEceEEeee
Q 039754 132 VILHGHSIHYI 142 (147)
Q Consensus 132 VIIrnL~I~~v 142 (147)
++++||.|.+-
T Consensus 89 f~~~nit~~Nt 99 (298)
T PF01095_consen 89 FTAENITFENT 99 (298)
T ss_dssp -EEEEEEEEEH
T ss_pred eeeeeeEEecC
Confidence 99999999874
No 20
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=68.89 E-value=20 Score=33.72 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=44.6
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCeeE-Ee------cCCc-----EEEeccCcEEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGADVH-IA------YGAG-----IMIQHVKNVIL 134 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~v~-I~------~G~G-----i~i~~~sNVII 134 (147)
|+.+||.. +..+++||=..|+-+ +.|.|. .|+|+.|.|.+-. |+ +|.+ -....++|++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 77778854 234667776788854 566663 6899999987433 33 1211 11225799999
Q ss_pred EceEEeeee
Q 039754 135 HGHSIHYIF 143 (147)
Q Consensus 135 rnL~I~~v~ 143 (147)
+||.|+|--
T Consensus 328 ~nitf~Nta 336 (548)
T PLN02301 328 QDIWFQNTA 336 (548)
T ss_pred EeeEEEECC
Confidence 999999753
No 21
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=67.80 E-value=24 Score=33.05 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=43.4
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec------CC-----cEEEeccCcEEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY------GA-----GIMIQHVKNVIL 134 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~------G~-----Gi~i~~~sNVII 134 (147)
|..+||.. +..+++||=..|+-+ +.|.| ..|+|+.|.|.+ ..|+. |. .-....++|++.
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F~a 309 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGFIA 309 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCEEE
Confidence 77788854 233566665678876 55666 357899998864 33431 11 011125799999
Q ss_pred EceEEeeee
Q 039754 135 HGHSIHYIF 143 (147)
Q Consensus 135 rnL~I~~v~ 143 (147)
+||.|.|--
T Consensus 310 ~nitf~Nta 318 (530)
T PLN02933 310 KDISFVNYA 318 (530)
T ss_pred EeeEEEECC
Confidence 999999753
No 22
>PLN02916 pectinesterase family protein
Probab=63.11 E-value=30 Score=32.30 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=44.2
Q ss_pred chHHHHHhc-------CCCeEEEEeeceEEEeCceeecC---CCceEeccCCe-eEEec------CCc-----EEEeccC
Q 039754 73 GTLCHAVIQ-------NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGAD-VHIAY------GAG-----IMIQHVK 130 (147)
Q Consensus 73 GsLr~Av~~-------~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~-v~I~~------G~G-----i~i~~~s 130 (147)
-|+.+||.. +..+++||=..|+-+ +.|.|. +|+|+.|.|.+ ..|+. |.+ -....++
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~ 277 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGD 277 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECC
Confidence 477788743 234666666778765 556663 58899999864 33431 111 1123588
Q ss_pred cEEEEceEEeeee
Q 039754 131 NVILHGHSIHYIF 143 (147)
Q Consensus 131 NVIIrnL~I~~v~ 143 (147)
+++.+||.|.|--
T Consensus 278 ~F~A~nitf~Nta 290 (502)
T PLN02916 278 GFWARDITFENTA 290 (502)
T ss_pred CEEEEeeEEEeCC
Confidence 9999999999753
No 23
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=63.01 E-value=26 Score=33.20 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=45.8
Q ss_pred CchHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCe-eEEecCC----cE-E------EeccCcE
Q 039754 72 PGTLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGAD-VHIAYGA----GI-M------IQHVKNV 132 (147)
Q Consensus 72 ~GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~-v~I~~G~----Gi-~------i~~~sNV 132 (147)
--|+.+||.. +..++|||=..|+-+-+ .|.|. .|+|+.|.|.+ ..|+.+. +. + ...++|+
T Consensus 284 f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F 362 (587)
T PLN02484 284 FKTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGF 362 (587)
T ss_pred cccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCE
Confidence 3467788854 23466766678886542 36663 68899999874 4444221 11 1 1258999
Q ss_pred EEEceEEeeee
Q 039754 133 ILHGHSIHYIF 143 (147)
Q Consensus 133 IIrnL~I~~v~ 143 (147)
+.|||.|.|--
T Consensus 363 ~a~~itf~Nta 373 (587)
T PLN02484 363 IARDMTFENWA 373 (587)
T ss_pred EEEeeEEEECC
Confidence 99999999853
No 24
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=59.60 E-value=30 Score=31.71 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=39.7
Q ss_pred HHHHHhcCCC--eEEEEeeceEEEeCceeecC-CC-----ceEeccCC-eeEEecCCcEEEeccCcEEEEceEEeeee
Q 039754 75 LCHAVIQNGP--LWIIFARDMHIKLSQELIMT-ND-----KTIDARGA-DVHIAYGAGIMIQHVKNVILHGHSIHYIF 143 (147)
Q Consensus 75 Lr~Av~~~~P--~~IvF~vsG~I~L~~~L~v~-s~-----kTI~G~ga-~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~ 143 (147)
|..|+.+-.| .+++ .+|+-+ ..+|.+. +. .||..+.. .+.|.+...|.| ..+.++|.+|.|++-.
T Consensus 7 lq~Ai~~a~pGD~I~L--~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~ 80 (425)
T PF14592_consen 7 LQSAIDNAKPGDTIVL--ADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGY 80 (425)
T ss_dssp HHHHHHH--TT-EEEE---SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE-
T ss_pred HHHHHHhCCCCCEEEE--CCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCC
Confidence 8999976444 4444 588887 3355542 32 68877654 588885566777 4799999999998753
No 25
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=57.77 E-value=68 Score=29.40 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=28.4
Q ss_pred chHHHHHhc-----CCCeEEEEeeceEEEeCceeec---CCCceEeccCC---eeEEe
Q 039754 73 GTLCHAVIQ-----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGA---DVHIA 119 (147)
Q Consensus 73 GsLr~Av~~-----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga---~v~I~ 119 (147)
-|+.+||.. +..+++||=..|+-+ +.|.| .+|+|+.|.|. .+.|+
T Consensus 95 ~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt 150 (422)
T PRK10531 95 TTVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIG 150 (422)
T ss_pred cCHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEE
Confidence 377778863 223556665678655 55666 46899999763 35555
No 26
>PLN02671 pectinesterase
Probab=56.98 E-value=74 Score=28.48 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=42.5
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCC---eeEEecCC--------c--E-------E
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGA---DVHIAYGA--------G--I-------M 125 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga---~v~I~~G~--------G--i-------~ 125 (147)
-|...||.. +..+++||=..|+-+ +.|.| .+|+|+.|.+. +..|+.+. | + .
T Consensus 72 ~TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 72 LTVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred cCHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 377778754 223455555678644 66666 36889999863 44555110 1 1 1
Q ss_pred EeccCcEEEEceEEeee
Q 039754 126 IQHVKNVILHGHSIHYI 142 (147)
Q Consensus 126 i~~~sNVIIrnL~I~~v 142 (147)
...++|++.+||.|.|-
T Consensus 150 ~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 150 TIESDYFCATGITFENT 166 (359)
T ss_pred EEECCceEEEeeEEEcC
Confidence 23578999999999886
No 27
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=56.02 E-value=50 Score=31.05 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=44.6
Q ss_pred chHHHHHhc-----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec----C-CcE------E-EeccCc
Q 039754 73 GTLCHAVIQ-----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY----G-AGI------M-IQHVKN 131 (147)
Q Consensus 73 GsLr~Av~~-----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~----G-~Gi------~-i~~~sN 131 (147)
-|..+||.. +..+.|||=..|+-+ +.|.| ..|+||.|.|.+ ..|+. + .|+ + ...+++
T Consensus 254 ~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v~~~~ 331 (553)
T PLN02708 254 KTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDG 331 (553)
T ss_pred cCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEEEcCC
Confidence 377788754 133666666788765 45555 368999999864 33431 1 231 1 136789
Q ss_pred EEEEceEEeeee
Q 039754 132 VILHGHSIHYIF 143 (147)
Q Consensus 132 VIIrnL~I~~v~ 143 (147)
++.+||.|.|--
T Consensus 332 f~a~~it~~Nta 343 (553)
T PLN02708 332 FMARDLTIQNTA 343 (553)
T ss_pred eEEEeeEEEcCC
Confidence 999999998753
No 28
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=55.87 E-value=48 Score=31.01 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=43.5
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCe-eEEec----CCcE------E-EeccCcEEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGAD-VHIAY----GAGI------M-IQHVKNVIL 134 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~-v~I~~----G~Gi------~-i~~~sNVII 134 (147)
|+.+||.. +..+++||=..|+-+ +.|.|. .|+|+.|.|.+ ..|+. ..|. + ...++|++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 77788854 223566665778764 556663 57899998864 33331 1111 1 135889999
Q ss_pred EceEEeeee
Q 039754 135 HGHSIHYIF 143 (147)
Q Consensus 135 rnL~I~~v~ 143 (147)
+||.|+|--
T Consensus 298 ~nitf~Nta 306 (520)
T PLN02201 298 RDITFQNTA 306 (520)
T ss_pred EeeEEEECC
Confidence 999999864
No 29
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=55.08 E-value=55 Score=31.10 Aligned_cols=68 Identities=9% Similarity=0.174 Sum_probs=44.2
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCee-EEecC----CcE-E------EeccCcEE
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGADV-HIAYG----AGI-M------IQHVKNVI 133 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~v-~I~~G----~Gi-~------i~~~sNVI 133 (147)
-|+.+||.. +..+++|+=..|+-+ +.|.|. .|+|+.|.|.+- .|+.. .|. + ...++|++
T Consensus 298 ~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~ 375 (596)
T PLN02745 298 TTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFM 375 (596)
T ss_pred ccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCCEE
Confidence 378888854 233566665678765 556663 588999998743 33311 121 1 12589999
Q ss_pred EEceEEeee
Q 039754 134 LHGHSIHYI 142 (147)
Q Consensus 134 IrnL~I~~v 142 (147)
.+||.|+|-
T Consensus 376 a~nitf~Nt 384 (596)
T PLN02745 376 AKSMGFRNT 384 (596)
T ss_pred EEeeEEEEC
Confidence 999999985
No 30
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=54.54 E-value=54 Score=28.11 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=16.7
Q ss_pred CCcEEEeccCcEEEEceEEe
Q 039754 121 GAGIMIQHVKNVILHGHSIH 140 (147)
Q Consensus 121 G~Gi~i~~~sNVIIrnL~I~ 140 (147)
+.||.+.+++|++|+|+++.
T Consensus 77 ~~GI~v~~s~~i~I~n~~i~ 96 (314)
T TIGR03805 77 GDGVKVKGSDGIIIRRLRVE 96 (314)
T ss_pred CCeEEEeCCCCEEEEeeEEE
Confidence 56788888899999998885
No 31
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=53.81 E-value=36 Score=25.80 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHH--hc-CCCeEEEEeeceEEEeCceeecCCCceEeccCC
Q 039754 75 LCHAV--IQ-NGPLWIIFARDMHIKLSQELIMTNDKTIDARGA 114 (147)
Q Consensus 75 Lr~Av--~~-~~P~~IvF~vsG~I~L~~~L~v~s~kTI~G~ga 114 (147)
|..|+ .+ .+..+|.| -.|+..++..|.+.|+++|.|.|.
T Consensus 21 iq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCC
Confidence 77777 22 34455555 689999999999999999999876
No 32
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=53.64 E-value=44 Score=31.31 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=43.5
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCee-EEecC----CcE-E------EeccCcEEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGADV-HIAYG----AGI-M------IQHVKNVIL 134 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~v-~I~~G----~Gi-~------i~~~sNVII 134 (147)
|+.+||.. +..+++||=..|+-+ +.|.| .+|+|+.|.|.+- .|+.+ .|. + ...++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67788854 233566665778654 55666 3689999998753 33311 111 1 125789999
Q ss_pred EceEEeeee
Q 039754 135 HGHSIHYIF 143 (147)
Q Consensus 135 rnL~I~~v~ 143 (147)
+||.|+|--
T Consensus 289 ~nitf~Nta 297 (509)
T PLN02488 289 IDMCFRNTA 297 (509)
T ss_pred EeeEEEECC
Confidence 999999753
No 33
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=53.10 E-value=49 Score=31.03 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=44.2
Q ss_pred hHHHHHhc-C-----CCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEecCC----cE-E------EeccCcE
Q 039754 74 TLCHAVIQ-N-----GPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAYGA----GI-M------IQHVKNV 132 (147)
Q Consensus 74 sLr~Av~~-~-----~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~G~----Gi-~------i~~~sNV 132 (147)
|..+||.. + ..+++||=..|+-+ +.|.| .+|+|+.|.|.+ ..|+.+. |. + ...++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 78888854 1 23566665678755 44555 369999999874 4444211 11 1 1268999
Q ss_pred EEEceEEeeee
Q 039754 133 ILHGHSIHYIF 143 (147)
Q Consensus 133 IIrnL~I~~v~ 143 (147)
+.+||.|.|--
T Consensus 315 ~a~nitf~Nta 325 (539)
T PLN02995 315 IAKGITFRNTA 325 (539)
T ss_pred EEEeeEEEeCC
Confidence 99999999853
No 34
>PLN02314 pectinesterase
Probab=52.35 E-value=59 Score=30.76 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=44.0
Q ss_pred chHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCe-eEEec----CCcE-E------EeccCcEE
Q 039754 73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGAD-VHIAY----GAGI-M------IQHVKNVI 133 (147)
Q Consensus 73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~-v~I~~----G~Gi-~------i~~~sNVI 133 (147)
-|+.+||.. +..++|||=..|+-+ +.|.|. .|+|+.|.|.+ ..|+. ..|. + ...+++++
T Consensus 291 ~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~F~ 368 (586)
T PLN02314 291 KTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKGFI 368 (586)
T ss_pred cCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCCeE
Confidence 478888854 334667766788855 556563 58899998864 33331 0111 1 12678999
Q ss_pred EEceEEeee
Q 039754 134 LHGHSIHYI 142 (147)
Q Consensus 134 IrnL~I~~v 142 (147)
.|||.|+|-
T Consensus 369 a~~itf~Nt 377 (586)
T PLN02314 369 AKDMGFINT 377 (586)
T ss_pred EEeeEEEEC
Confidence 999999976
No 35
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=52.01 E-value=68 Score=27.16 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=7.8
Q ss_pred EeccCcEEEEceEEeee
Q 039754 126 IQHVKNVILHGHSIHYI 142 (147)
Q Consensus 126 i~~~sNVIIrnL~I~~v 142 (147)
|...++..|+.++|++-
T Consensus 93 I~~~~~~~i~GvtItN~ 109 (246)
T PF07602_consen 93 IILANNATISGVTITNP 109 (246)
T ss_pred EEecCCCEEEEEEEEcC
Confidence 33444444555554443
No 36
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=51.63 E-value=78 Score=29.90 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=42.9
Q ss_pred hHHHHHhc-C------CCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEe------cCCc-----EEEeccCc
Q 039754 74 TLCHAVIQ-N------GPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIA------YGAG-----IMIQHVKN 131 (147)
Q Consensus 74 sLr~Av~~-~------~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~------~G~G-----i~i~~~sN 131 (147)
|..+||.. + ..+++|+=..|+-+ +.|.| ..|+|+.|.|.+ ..|+ +|.+ -....+++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v~~~~ 341 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQN 341 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEEECCC
Confidence 77778754 1 12566665678865 55666 358899998864 3343 1211 11236799
Q ss_pred EEEEceEEeee
Q 039754 132 VILHGHSIHYI 142 (147)
Q Consensus 132 VIIrnL~I~~v 142 (147)
++.+||.|.|-
T Consensus 342 F~a~nitf~Nt 352 (566)
T PLN02713 342 FVAVNITFRNT 352 (566)
T ss_pred eEEEeeEEEeC
Confidence 99999999985
No 37
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=51.46 E-value=60 Score=30.69 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=44.0
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCe-eEEecC----Cc-E-E------EeccCcEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGAD-VHIAYG----AG-I-M------IQHVKNVI 133 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~-v~I~~G----~G-i-~------i~~~sNVI 133 (147)
|+.+||.. +..+++||=..|+-+ +.|.|. .|+|+.|.|.+ ..|+.. .| . + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 78888854 233566666778655 556663 68999999864 344311 11 1 1 12578999
Q ss_pred EEceEEeeee
Q 039754 134 LHGHSIHYIF 143 (147)
Q Consensus 134 IrnL~I~~v~ 143 (147)
.|||.|.|--
T Consensus 351 a~nitf~Nta 360 (572)
T PLN02990 351 AKNIGFENTA 360 (572)
T ss_pred EEeeEEEeCC
Confidence 9999998753
No 38
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=49.08 E-value=50 Score=31.24 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=43.5
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCe-eEEe------cCCc----EE-EeccCcEEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGAD-VHIA------YGAG----IM-IQHVKNVIL 134 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~-v~I~------~G~G----i~-i~~~sNVII 134 (147)
|+.+||.. +..++|||=..|+-+ +.|.|. .|+++.|.|.+ ..|+ +|.+ -+ ...+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 77778854 234666666788654 556663 58899998874 3333 1111 11 125789999
Q ss_pred EceEEeeee
Q 039754 135 HGHSIHYIF 143 (147)
Q Consensus 135 rnL~I~~v~ 143 (147)
+||.|+|--
T Consensus 367 ~~itf~Nta 375 (587)
T PLN02313 367 RDITFQNTA 375 (587)
T ss_pred EeeEEEeCC
Confidence 999999863
No 39
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=48.32 E-value=1e+02 Score=28.95 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=44.4
Q ss_pred CchHHHHHhc---CC----CeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEe------cCC-----cEEEecc
Q 039754 72 PGTLCHAVIQ---NG----PLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIA------YGA-----GIMIQHV 129 (147)
Q Consensus 72 ~GsLr~Av~~---~~----P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~------~G~-----Gi~i~~~ 129 (147)
--|+.+||.. .. -+++||=..|+-+ +.|.| ..|+||.|.|.+ ..|+ +|. --....+
T Consensus 235 f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v~~ 312 (538)
T PLN03043 235 FTTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAVSG 312 (538)
T ss_pred CcCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEEEC
Confidence 3477888854 11 1566666788865 55666 368999999864 3333 121 1112367
Q ss_pred CcEEEEceEEeee
Q 039754 130 KNVILHGHSIHYI 142 (147)
Q Consensus 130 sNVIIrnL~I~~v 142 (147)
+++|.+||.|+|-
T Consensus 313 ~~F~a~~it~~Nt 325 (538)
T PLN03043 313 ERFVAVDVTFRNT 325 (538)
T ss_pred CCEEEEeeEEEEC
Confidence 9999999999985
No 40
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=47.37 E-value=76 Score=30.73 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=43.0
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCee-EEec----CCcE-E------EeccCcEEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGADV-HIAY----GAGI-M------IQHVKNVIL 134 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~v-~I~~----G~Gi-~------i~~~sNVII 134 (147)
|+.+||.. +..++|||=..|+-+ +.|.|. .|+++.|.|.+- .|+. ..|. + ...+++++.
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a 341 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGIYK--EYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIA 341 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCceE--EEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEE
Confidence 77888854 234666665678643 556664 478899988643 3331 1121 1 125789999
Q ss_pred EceEEeeee
Q 039754 135 HGHSIHYIF 143 (147)
Q Consensus 135 rnL~I~~v~ 143 (147)
|||.|+|--
T Consensus 342 ~nitf~Nta 350 (670)
T PLN02217 342 KNIGFENTA 350 (670)
T ss_pred EeeEEEeCC
Confidence 999999753
No 41
>PLN03010 polygalacturonase
Probab=46.80 E-value=41 Score=30.41 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=9.9
Q ss_pred EEEeccCcEEEEceEEee
Q 039754 124 IMIQHVKNVILHGHSIHY 141 (147)
Q Consensus 124 i~i~~~sNVIIrnL~I~~ 141 (147)
|.+.+.+||.|++|++++
T Consensus 160 l~~~~~~nv~v~gitl~n 177 (409)
T PLN03010 160 LHISKCDNLTINGITSID 177 (409)
T ss_pred EEEEeecCeEEeeeEEEc
Confidence 445555666666555543
No 42
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=46.32 E-value=78 Score=29.84 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=42.4
Q ss_pred hHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCCeeE-Ee------cCCc-----EEEeccCcEEE
Q 039754 74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGADVH-IA------YGAG-----IMIQHVKNVIL 134 (147)
Q Consensus 74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga~v~-I~------~G~G-----i~i~~~sNVII 134 (147)
|..+||.. +..++|||=..|+-+ +.|.|. .|+|+.|.|.+-. |+ +|.. -....+++++.
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v~~~~f~a 349 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKGFMA 349 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeEECCCeEE
Confidence 67778754 233566666788765 556663 5789999886432 32 1110 11125789999
Q ss_pred EceEEeee
Q 039754 135 HGHSIHYI 142 (147)
Q Consensus 135 rnL~I~~v 142 (147)
|||.|.|-
T Consensus 350 ~~itf~Nt 357 (565)
T PLN02468 350 RDMGFRNT 357 (565)
T ss_pred EEEEEEeC
Confidence 99999875
No 43
>PLN03003 Probable polygalacturonase At3g15720
Probab=44.30 E-value=35 Score=31.39 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=27.3
Q ss_pred CeEEEEeeceEEEeCceeecCCCceEeccCCeeE----EecCCcEEEeccCcEEEEceEEee
Q 039754 84 PLWIIFARDMHIKLSQELIMTNDKTIDARGADVH----IAYGAGIMIQHVKNVILHGHSIHY 141 (147)
Q Consensus 84 P~~IvF~vsG~I~L~~~L~v~s~kTI~G~ga~v~----I~~G~Gi~i~~~sNVIIrnL~I~~ 141 (147)
..||.|.-- + -|.|...=||+|+|..-. -. -.-|.+.+++||.|++|++.+
T Consensus 104 ~~wI~f~~~-----~-~i~I~G~GtIDGqG~~wW~~~~~r-P~~l~f~~~~nv~I~gitl~N 158 (456)
T PLN03003 104 DQWILFTDI-----E-GLVIEGDGEINGQGSSWWEHKGSR-PTALKFRSCNNLRLSGLTHLD 158 (456)
T ss_pred cceEEEEcc-----c-ceEEeccceEeCCchhhhhcccCC-ceEEEEEecCCcEEeCeEEec
Confidence 347777421 1 234433347888775211 01 123566677777777777654
No 44
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=43.91 E-value=25 Score=25.32 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEE
Q 039754 53 KGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWII 88 (147)
Q Consensus 53 gG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~Iv 88 (147)
-|..++||+-+| ||.|+...+++-+.
T Consensus 52 dGDlVTIts~~d----------L~~A~~~~~~~~l~ 77 (81)
T cd06401 52 DGDLITIFDSSD----------LSFAIQCSRILKLT 77 (81)
T ss_pred CCCEEEeccHHH----------HHHHHhcCcceEEE
Confidence 478999999877 99998888877554
No 45
>PLN02155 polygalacturonase
Probab=39.66 E-value=75 Score=28.50 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=13.4
Q ss_pred cEEEeccCcEEEEceEEee
Q 039754 123 GIMIQHVKNVILHGHSIHY 141 (147)
Q Consensus 123 Gi~i~~~sNVIIrnL~I~~ 141 (147)
-|.+.+.+||.|++|++++
T Consensus 147 ~i~~~~~~nv~i~gitl~n 165 (394)
T PLN02155 147 SISFNSAKDVIISGVKSMN 165 (394)
T ss_pred ceeEEEeeeEEEECeEEEc
Confidence 3666777777777777764
No 46
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=39.44 E-value=30 Score=28.45 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCCCCCCCchHHHHHh--cCCCeEEEEe---eceEEEeCceeecCCCceEeccCCeeEEecCCcEEEe
Q 039754 56 IYIVTDSSDNDFINSKPGTLCHAVI--QNGPLWIIFA---RDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQ 127 (147)
Q Consensus 56 vy~VT~l~d~d~~~p~~GsLr~Av~--~~~P~~IvF~---vsG~I~L~~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~ 127 (147)
-|+|.-+.+.-..+--+||+..-+. ...-+..+.. |.|.+....-....+-+|+-|---.+.+. +.++.+.
T Consensus 81 p~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~~~~l~~~~~v~t~~G~~~~i~~~-~~~~~Vn 156 (187)
T COG2335 81 PFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKITAADLKSSGSVKTVQGADLKIKVT-GGGVYVN 156 (187)
T ss_pred CeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcccHHHhhccccceeecCceEEEEEc-CCcEEEe
Confidence 4566665443355667788766654 2222222221 57887776544467777777766666666 5567664
No 47
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=38.29 E-value=30 Score=32.65 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=35.2
Q ss_pred EEeeceE---EEeCceeecCCCceEeccCCeeEEec-CCcEEEeccCcEEEEceEEeee
Q 039754 88 IFARDMH---IKLSQELIMTNDKTIDARGADVHIAY-GAGIMIQHVKNVILHGHSIHYI 142 (147)
Q Consensus 88 vF~vsG~---I~L~~~L~v~s~kTI~G~ga~v~I~~-G~Gi~i~~~sNVIIrnL~I~~v 142 (147)
+||-+|. |+-.+.-.+.-||--+||+.+++|.+ |+||.- +|-|+||--|++.
T Consensus 458 IFDNaMagVwIKTds~PtlrRNKI~dgRdgGicifngGkGlle---~neif~Nalit~S 513 (625)
T KOG1777|consen 458 IFDNAMAGVWIKTDSNPTLRRNKIYDGRDGGICIFNGGKGLLE---HNEIFRNALITDS 513 (625)
T ss_pred chhhhhcceEEecCCCcceeecceecCCCCcEEEecCCceeee---chhhhhccccccC
Confidence 6666654 45555556677899999999999995 566643 5666666555443
No 48
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=36.25 E-value=1.4e+02 Score=27.69 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=18.6
Q ss_pred ceeecCCCceEeccCCee--EEecCCcEE-EeccCcEEEEceEEe
Q 039754 99 QELIMTNDKTIDARGADV--HIAYGAGIM-IQHVKNVILHGHSIH 140 (147)
Q Consensus 99 ~~L~v~s~kTI~G~ga~v--~I~~G~Gi~-i~~~sNVIIrnL~I~ 140 (147)
..|.+.++.||.|...-. .|..+.++. -.+++||-|++|+|+
T Consensus 81 G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtId 125 (455)
T TIGR03808 81 GPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLD 125 (455)
T ss_pred ccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEE
Confidence 345555555555553211 233222222 134555555555554
No 49
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=31.86 E-value=25 Score=26.38 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCCCcccccCCcchhccccCccC-CCcccccCCCCCC-CC-----cEEEEcCCCCCCC-----CCCCCchHHHHHhcCCC
Q 039754 17 TNPVDRCWRCWKDWANYRPKLAD-CVPGFGHKITGGQ-KG-----PIYIVTDSSDNDF-----INSKPGTLCHAVIQNGP 84 (147)
Q Consensus 17 ~n~id~cwr~~~~W~~~r~~la~-~a~GfG~~ttGGr-gG-----~vy~VT~l~d~d~-----~~p~~GsLr~Av~~~~P 84 (147)
....|+||.|++|=...+.-+.. +..=|=+-..|.. .| .+.++.++...|. .+--.-+|+......+.
T Consensus 7 ~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~ 86 (121)
T PF04677_consen 7 NKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQGK 86 (121)
T ss_pred CCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34689999999663322222221 3333444444543 23 2334444432110 01123445555555566
Q ss_pred eEEEEeec
Q 039754 85 LWIIFARD 92 (147)
Q Consensus 85 ~~IvF~vs 92 (147)
-.|+|+..
T Consensus 87 ~vvf~E~~ 94 (121)
T PF04677_consen 87 DVVFFERV 94 (121)
T ss_pred CEEEEEEe
Confidence 67778764
No 50
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=31.00 E-value=48 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=22.1
Q ss_pred eEeccCCeeEEecCCcEEEeccCcEEEEceEEeee
Q 039754 108 TIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI 142 (147)
Q Consensus 108 TI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v 142 (147)
||+|.|..-.=. ..+|.+.+++++.|++.+|.+.
T Consensus 123 tIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gs 156 (455)
T TIGR03808 123 TLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGS 156 (455)
T ss_pred EEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcC
Confidence 444544322212 4577788889999999998764
No 51
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=29.21 E-value=46 Score=25.26 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.3
Q ss_pred CCcEEEeccCcEEEEceEEeeeec
Q 039754 121 GAGIMIQHVKNVILHGHSIHYIFP 144 (147)
Q Consensus 121 G~Gi~i~~~sNVIIrnL~I~~v~~ 144 (147)
..|+.+...++++|+|.+|+++..
T Consensus 199 ~~gi~i~~~~~~~i~n~~i~~~~~ 222 (225)
T PF12708_consen 199 GNGINIEGGSNIIISNNTIENCDD 222 (225)
T ss_dssp SESEEEEECSEEEEEEEEEESSSE
T ss_pred ceeEEEECCeEEEEEeEEEECCcc
Confidence 468888889999999999998763
No 52
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=27.38 E-value=1.4e+02 Score=18.97 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=26.1
Q ss_pred CceEeccCCeeEEecCCcEEEeccCcEEEEceEEeeeecCC
Q 039754 106 DKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFPAS 146 (147)
Q Consensus 106 ~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~~~~ 146 (147)
+++.+-.|..+..+ |++.+..+.-.+|+.|.|..|.+
T Consensus 4 d~~~~~~Gd~v~Yt----i~v~N~g~~~a~~v~v~D~lP~g 40 (53)
T TIGR01451 4 DKTVATIGDTITYT----ITVTNNGNVPATNVVVTDILPSG 40 (53)
T ss_pred CccccCCCCEEEEE----EEEEECCCCceEeEEEEEcCCCC
Confidence 44445556666666 77888777778888888887764
No 53
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=26.76 E-value=20 Score=23.80 Aligned_cols=19 Identities=47% Similarity=0.842 Sum_probs=13.2
Q ss_pred CcccccCCcchhccccCcc
Q 039754 20 VDRCWRCWKDWANYRPKLA 38 (147)
Q Consensus 20 id~cwr~~~~W~~~r~~la 38 (147)
-|+|=||-..|+-+|-.-|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 5899999999999886544
No 54
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=26.76 E-value=68 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=0.0
Q ss_pred eEeccCC------------eeEEecCCcEEEeccCcEEEEceEEee
Q 039754 108 TIDARGA------------DVHIAYGAGIMIQHVKNVILHGHSIHY 141 (147)
Q Consensus 108 TI~G~ga------------~v~I~~G~Gi~i~~~sNVIIrnL~I~~ 141 (147)
||+|+|. +-... ..-|.+.+++||.|++|+|++
T Consensus 131 ~IDG~G~~ww~~~~~~~~~~~~~r-P~~i~f~~~~nv~i~gitl~n 175 (404)
T PLN02188 131 TFDGQGAAAWPFNKCPIRKDCKLL-PTSVKFVNMNNTVVRGITSVN 175 (404)
T ss_pred EEeCCCcccccccccccCCCCCcC-ceEEEEEeeeeEEEeCeEEEc
No 55
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=24.31 E-value=2e+02 Score=24.57 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=16.5
Q ss_pred CCcEEEeccCcEEEEceEEe
Q 039754 121 GAGIMIQHVKNVILHGHSIH 140 (147)
Q Consensus 121 G~Gi~i~~~sNVIIrnL~I~ 140 (147)
..||.+...+||.|+|..|+
T Consensus 142 tDGid~~~s~nv~I~n~~i~ 161 (326)
T PF00295_consen 142 TDGIDIDSSKNVTIENCFID 161 (326)
T ss_dssp --SEEEESEEEEEEESEEEE
T ss_pred cceEEEEeeeEEEEEEeecc
Confidence 57899999999999999985
No 56
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=20.19 E-value=46 Score=33.30 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHhcCCCeEEEEeeceEEEe---CceeecC--CCceEeccCC-----------------eeEE----ecCCcEEEeccC
Q 039754 77 HAVIQNGPLWIIFARDMHIKL---SQELIMT--NDKTIDARGA-----------------DVHI----AYGAGIMIQHVK 130 (147)
Q Consensus 77 ~Av~~~~P~~IvF~vsG~I~L---~~~L~v~--s~kTI~G~ga-----------------~v~I----~~G~Gi~i~~~s 130 (147)
--+.++|-|+.+|. .-|--| .--|.+- +|.-+||.+. .|.| ++|-||.|..|+
T Consensus 771 p~~k~~G~RVLiFS-QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 771 PKIKKKGDRVLIFS-QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred HHHhhcCCEEEEee-HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 33455777888883 111111 1122221 4677788775 1222 379999999999
Q ss_pred cEEEEceEEeeee
Q 039754 131 NVILHGHSIHYIF 143 (147)
Q Consensus 131 NVIIrnL~I~~v~ 143 (147)
+||||.+-|....
T Consensus 850 ~VIihD~dFNP~d 862 (941)
T KOG0389|consen 850 TVIIHDIDFNPYD 862 (941)
T ss_pred eEEEeecCCCCcc
Confidence 9999999886443
Done!