BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039757
(415 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
Length = 495
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/450 (53%), Positives = 304/450 (67%), Gaps = 52/450 (11%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHT----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS 58
+++ T +I S ++T+ LL+ T LL NTLLH Y L Y+ L+Q
Sbjct: 61 TTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPL----------YQPLRQF---- 106
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
+ P +D+F YSFL+ +C L G QLHA+ K+GF SHVYV TA++ MY + GF
Sbjct: 107 -PRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGF 165
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L D+ K+FDE+P+R+ VTWNV+ITGLVK+GEL+ AR +F++MP R VVSWT I+DGYTR+
Sbjct: 166 LLDAMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIIDGYTRL 225
Query: 179 NRSNGAS-----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
NR A+ EP+E+T+L + PAI GA++ CQ +H Y EK+GF D+R
Sbjct: 226 NRHEEAAGLFWRMVAHFGMEPNEVTLLTIFPAISNLGALKLCQSVHAYAEKKGFKVSDVR 285
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
++N LID YAKCGCI SA K+FE++S E KNLVSWTSIISGF MHGMGK A+E+FE M+K
Sbjct: 286 IANSLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIMEK 345
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
G +PNRVTFLS+++ACSHGGL HYG L+DMLGRAGR+E
Sbjct: 346 EGHEPNRVTFLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMHYGSLIDMLGRAGRIE 405
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+AEKIAL IP EI VV+ R LLGACSFHGNV M ERVT+++L ME GGDYVLM NI
Sbjct: 406 EAEKIALEIPKEIASVVIWRTLLGACSFHGNVSMAERVTQRILNMEGAYGGDYVLMSNIF 465
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A G+Y DAER RR+MD K PG+SLV
Sbjct: 466 AAAGKYGDAERWRRLMDSSKFSKIPGQSLV 495
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/456 (51%), Positives = 308/456 (67%), Gaps = 45/456 (9%)
Query: 1 SPSSNNVTTRIHSHLLTTN---SLLHHTL----LFNTLLHFYSLADSPKKAFLLYKQLQQ 53
PS ++HSH++T+ + H+TL LFN ++ YS P +A + Q
Sbjct: 52 DPSQRQPLQQVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQ- 110
Query: 54 IYTHSHSPLR-PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
H H+ L P D+F+++FL +Y + GTQLHA++ KVGFQ HVYV T L+ M
Sbjct: 111 ---HCHTFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALVFKVGFQFHVYVKTGLLQM 167
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y S G L +++++F E+ RNLV+WNV ITGL+KWGE+E A S+F +MP R+VVSWT ++
Sbjct: 168 YSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVI 227
Query: 173 DGYTRMNRSNGAST-----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
DGYTR N+ A T EP+E+T+L + PAI G ++ CQ +H Y EKRGF
Sbjct: 228 DGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGF 287
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
NAFD+R++N L+D YAKCGCI S + F++I +R+NLVSWTS ISGFAM+GMG+ A+E+
Sbjct: 288 NAFDVRITNALLDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALES 347
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
FE M+K GL+PN VTFL VL+ACSHGGL HYGC++DMLG
Sbjct: 348 FESMEKTGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLG 407
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
RAGRLE+AEK+AL +P E+ + V+ R LLGACS H NVE+G+RVT K+LEMERG+GGDYV
Sbjct: 408 RAGRLEEAEKVALQVPHEVANAVMWRTLLGACSVHNNVEIGQRVTNKILEMERGHGGDYV 467
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
LM NIL GVGR+ DAERLR V+D+R A K PG S V
Sbjct: 468 LMSNILVGVGRFKDAERLREVIDKRIAFKLPGYSFV 503
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/337 (68%), Positives = 264/337 (78%), Gaps = 33/337 (9%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY+S G L D+ LFDE+P+RN+VTWNVMITGLVKWG+LE+A SLF+EMP +NVVSWTGI
Sbjct: 1 MYLSSGVLGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGI 60
Query: 172 LDGYTRMNR-SNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
+DGY R N+ S G S +P+EITILA+LPAI G +++C LIHGY EKRG
Sbjct: 61 IDGYIRNNKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRG 120
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
FNAFDIRV+N +ID Y+KCGCI SA K FEDISVERKNLVSWTSIISGFAMHGM K AVE
Sbjct: 121 FNAFDIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVE 180
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
FERM+K GLKPNRVTFLSVLNACSHGGL HYGC+VDML
Sbjct: 181 YFERMEKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCVVDML 240
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR GRLE+AE +AL IPSEI +VV+ R LLGACSFHGNVEMGERVTRK++EMERG GGDY
Sbjct: 241 GRTGRLEEAENMALEIPSEIVNVVIWRTLLGACSFHGNVEMGERVTRKIMEMERGYGGDY 300
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLMYNI AG GRY DAERLR++M++RNA K PG SLV
Sbjct: 301 VLMYNIFAGAGRYEDAERLRKLMNKRNAFKLPGNSLV 337
>gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/440 (56%), Positives = 306/440 (69%), Gaps = 39/440 (8%)
Query: 10 RIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++HSHL+TT + H +N LL YSL P++AFLL++ L+ H + PL FD
Sbjct: 34 QLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLR--LHHVYPPLS--FD 89
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SF++SFL++ C L + G QLHA+ K+GF+ HVYV+T L+N+Y + G ++ ++FD
Sbjct: 90 SFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFD 149
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT I+DGYTRMN+ A
Sbjct: 150 EMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALAL 209
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P+EIT+LA+ PAI GA+ CQLIH YGEK G NA DIR+ L+DTY
Sbjct: 210 FLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTY 269
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM K A+ENFERMQK LKPNR+T
Sbjct: 270 AKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FLSVLNACSHGGL HYGCL+DMLGRAGRL++AEK+AL I
Sbjct: 330 FLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEI 389
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + +VV+ R LLGACSFHGNVEMG RVTRK+LEMER GGDYVL+ NI AGVGR+ D
Sbjct: 390 PDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAGVGRFWDV 449
Query: 395 ERLRRVMDERNALKFPGRSL 414
ER+RR+MDERNA K PG S
Sbjct: 450 ERVRRLMDERNASKVPGLSF 469
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/434 (56%), Positives = 305/434 (70%), Gaps = 39/434 (8%)
Query: 10 RIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++HSHL+TT + H +N LL YSL P++AFLL++ L+ H + PL FD
Sbjct: 34 QLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLR--LHHVYPPL--SFD 89
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SF++SFL++ C L + G QLHA+ K+GF+ HVYV+T L+N+Y + G ++ ++FD
Sbjct: 90 SFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFD 149
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P RN VTWNV ITGL KWGEL ARSL +EMP VVSWT I+DGYTRMN+ A
Sbjct: 150 EMPVRNSVTWNVFITGLAKWGELHLARSLLDEMPMPTVVSWTTIIDGYTRMNQPKQALAL 209
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P+EIT+LA+ PAI GA+ CQLIH YGEK G NA DIR+ L+DTY
Sbjct: 210 FLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTY 269
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA ++F +I + +NLVSWTSIIS FAMHGM K A+ENFERMQK LKPNR+T
Sbjct: 270 AKCGCIESASRVFGEIDAKSRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FLSVLNACSHGGL HYGCL+DMLGRAGRL++AEK+AL I
Sbjct: 330 FLSVLNACSHGGLVEEGLKFFTKMVNKYQISPDVKHYGCLIDMLGRAGRLDEAEKMALEI 389
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P+ + +VV+ R LLGACSFHGNVEMG RVTRK+LEME+ GGDYVL+ NI AGVGR+ D
Sbjct: 390 PNYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMEKKYGGDYVLLSNIFAGVGRFWDV 449
Query: 395 ERLRRVMDERNALK 408
ER+RR+MDERNA K
Sbjct: 450 ERVRRLMDERNASK 463
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/455 (50%), Positives = 306/455 (67%), Gaps = 45/455 (9%)
Query: 2 PSSNNVTTRIHSHLLTTN---SLLHHTL----LFNTLLHFYSLADSPKKAFLLYKQLQQI 54
PS ++HSH++T+ + H+TL LFN ++ YS P +A + Q
Sbjct: 67 PSQRQPLQQVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQ-- 124
Query: 55 YTHSHSPLR-PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113
H H L P D+F+++FL +Y + GTQLHA+I KVGFQ VYV T L+ MY
Sbjct: 125 --HCHIFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALIFKVGFQFQVYVQTRLLQMY 182
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
S G L +++++F E+ RNLV+WNV ITGL+K GE+E A S+F +MP R+VVSWT ++D
Sbjct: 183 SSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVID 242
Query: 174 GYTRMNRSNGAST-----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
GYTR N+ A T EP+E+T+L + PAI G ++ CQ +HGY EKRGFN
Sbjct: 243 GYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFN 302
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
AFD+R++N L+D YAKCGCI S + F++I +R+NLVSWTS ISGFAM+GMG+ A+E+F
Sbjct: 303 AFDVRITNALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESF 362
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
E M+K GL+PN VTFL VL+ACSHGGL HYGC++DMLGR
Sbjct: 363 ESMEKAGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGR 422
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AGRLE+AEKIAL +P E+ + V+ R LLGAC+ H NVE+G+RVT K+LEMERG+GGDYVL
Sbjct: 423 AGRLEEAEKIALQVPHEVANAVMWRTLLGACNVHNNVEIGQRVTNKILEMERGHGGDYVL 482
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
M NIL GVGR+ DAE+LR ++D+R A K PG S V
Sbjct: 483 MSNILVGVGRFKDAEKLREMIDKRIAFKLPGYSFV 517
>gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 337
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/337 (67%), Positives = 261/337 (77%), Gaps = 33/337 (9%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY++ GFL ++ FDE+PE+N VTWNVMITGLVKWG+LE+ARS F++MP +NVVSWTGI
Sbjct: 1 MYLASGFLGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGI 60
Query: 172 LDGYTRMNR-SNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
+DGY RMNR + G + PSEITILA+LPAI G ++NC LIH EKRG
Sbjct: 61 IDGYVRMNRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRG 120
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
FN+ DIRV+N +IDTYAKCGCI SA + FE+ISVERKNLVSWTSIISGFAMHGMG+ AV+
Sbjct: 121 FNSSDIRVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVK 180
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
FE M++ GLKPNRVTFLSVLNACSHGGL HYGCLVDML
Sbjct: 181 RFENMERTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCLVDML 240
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR GRLE+AEK+ALGIPSEI + V+ R LLGACSFHGN E+GERVTRK++EMERG GGDY
Sbjct: 241 GRTGRLEEAEKLALGIPSEIVNAVIWRTLLGACSFHGNSEIGERVTRKIMEMERGYGGDY 300
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLMYNI AGVGR+ DAERLR +MDERNA K PG SLV
Sbjct: 301 VLMYNIFAGVGRFEDAERLRVLMDERNAFKVPGHSLV 337
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/448 (49%), Positives = 297/448 (66%), Gaps = 48/448 (10%)
Query: 10 RIHSHLLTTNSLLHH---------TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
++HS ++T+ SL HH LLFN L+ YSL+ P ++ + THS S
Sbjct: 53 QLHSQIITS-SLFHHYPFHNNLTSLLLFNNLIRSYSLSLFPHESLKFFTHTLNNLTHSLS 111
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
DSFT +FL C L + G LH ++ K+GF++HV+V T L++MY + GFL
Sbjct: 112 -----LDSFTLTFLAHACANLDTTHFGFHLHCIVCKMGFENHVFVQTGLLHMYSNWGFLV 166
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D++++F E+P+RN VTWNV I+GL+KWG+LE+ARS+F+ M R+VVSWT ++DGYTRMN+
Sbjct: 167 DAAQVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNK 226
Query: 181 SNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
A EP+E+T+L V PAI G V+ C+ +HGY EKRGFNA DIR+
Sbjct: 227 PLKALALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIV 286
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LID YAKCGCI SA LF ++ R+N VSW S++SG+A GM + AV+ FE+M+K G
Sbjct: 287 NALIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAG 346
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
++PN V FLS+L+ACSH GL HYGC++DMLGRAGRL +A
Sbjct: 347 VRPNHVAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCVIDMLGRAGRLGEA 406
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
EK+AL +P E + V+ R LLGACS H NVE+G+RVT+K+LEME+G+GGDYVLM NI A
Sbjct: 407 EKVALEVPHEAANDVIWRTLLGACSVHDNVEIGKRVTKKILEMEKGHGGDYVLMSNIFAS 466
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
VGR+ D ERLR ++D+RN K PG S+V
Sbjct: 467 VGRFKDVERLREMIDKRNVFKLPGYSIV 494
>gi|334182414|ref|NP_172393.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116771|sp|Q680Z7.1|PPR24_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g09220, mitochondrial; Flags: Precursor
gi|51969004|dbj|BAD43194.1| hypothetical protein [Arabidopsis thaliana]
gi|51969582|dbj|BAD43483.1| hypothetical protein [Arabidopsis thaliana]
gi|51969876|dbj|BAD43630.1| hypothetical protein [Arabidopsis thaliana]
gi|62318861|dbj|BAD93927.1| hypothetical protein [Arabidopsis thaliana]
gi|332190294|gb|AEE28415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 293/457 (64%), Gaps = 45/457 (9%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHT-------LLFNTLLHFYSLADSPKKAFLLYKQLQQI- 54
S+ + ++HSH T+ LL H LFN LL YSL ++P A+ LY QLQ++
Sbjct: 48 SNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYDQLQRLH 107
Query: 55 YTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS--KVGFQSHVYVNTALVNM 112
+ H+ P FDSFTY FL++ +P+L + K+GF+SHVYV TALV M
Sbjct: 108 FLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFESHVYVQTALVGM 167
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y+ G + D+ K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT I+
Sbjct: 168 YLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTII 227
Query: 173 DGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
DGY R+++ A + +P+EITILA+LPA+W G ++ C +H Y KRGF
Sbjct: 228 DGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGF 287
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
DIRV+N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGK AV
Sbjct: 288 VPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSM 347
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDML 318
F+ M+++GLKPNRVT +SVLNACSHGGL HYGCLVDML
Sbjct: 348 FKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDML 407
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
R GRLE+AEKIAL IP E VV R+LLGACS + + E+ ERVTRK++E+ER +GGDY
Sbjct: 408 RRKGRLEEAEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDY 466
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLM NI G GR++DA+R R+ MD R K PG S V
Sbjct: 467 VLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
>gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera]
Length = 610
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/419 (56%), Positives = 289/419 (68%), Gaps = 39/419 (9%)
Query: 10 RIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++HSHL+TT + H +N LL YSL P++AFLL++ L+ H + PL FD
Sbjct: 34 QLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLR--LHHVYPPLS--FD 89
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SF++SFL++ C L + G QLHA+ K+GF+ HVYV+T L+N+Y + G ++ ++FD
Sbjct: 90 SFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFD 149
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT I+DGYTRMN+ A
Sbjct: 150 EMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALAL 209
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P+EIT+LA+ PAI GA+ CQLIH YGEK G NA DIR+ L+DTY
Sbjct: 210 FLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTY 269
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM K A+ENFERMQK LKPNR+T
Sbjct: 270 AKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FLSVLNACSHGGL HYGCL+DMLGRAGRL++AEK+AL I
Sbjct: 330 FLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEI 389
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
P + +VV+ R LLGACSFHGNVEMG RVTRK+LEMER GGDYVL+ NI AGVGR D
Sbjct: 390 PDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAGVGRIKD 448
>gi|302144057|emb|CBI23162.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 287/415 (69%), Gaps = 39/415 (9%)
Query: 10 RIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++HSHL+TT + H +N LL YSL P++AFLL++ L+ H + PL FD
Sbjct: 34 QLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLR--LHHVYPPLS--FD 89
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SF++SFL++ C L + G QLHA+ K+GF+ HVYV+T L+N+Y + G ++ ++FD
Sbjct: 90 SFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFD 149
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT I+DGYTRMN+ A
Sbjct: 150 EMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALAL 209
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P+EIT+LA+ PAI GA+ CQLIH YGEK G NA DIR+ L+DTY
Sbjct: 210 FLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTY 269
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM K A+ENFERMQK LKPNR+T
Sbjct: 270 AKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FLSVLNACSHGGL HYGCL+DMLGRAGRL++AEK+AL I
Sbjct: 330 FLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEI 389
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
P + +VV+ R LLGACSFHGNVEMG RVTRK+LEMER GGDYVL+ NI AGVG
Sbjct: 390 PDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAGVG 444
>gi|359475755|ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09220, mitochondrial-like [Vitis vinifera]
Length = 509
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/374 (56%), Positives = 260/374 (69%), Gaps = 38/374 (10%)
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+ C L + G QLHA+ K GF+ HVY++T L+N+Y G L ++ ++ DE+P RN V
Sbjct: 140 KACAYLQHRKGGLQLHALTLKAGFEFHVYLHTVLLNVYAVCGALLEAKQVLDEMPVRNSV 199
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------- 184
TWNV+ITGL KWGEL ARSLF+EMP VVSWT I+DGYTRMN+ A
Sbjct: 200 TWNVLITGLAKWGELHLARSLFDEMPMPTVVSWTTIIDGYTRMNQPKQALALFRTMFIDE 259
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
+P+EI +LA+ PAI GA+ CQL+H YGEK G NA DIR+ N L+DTYAKCGC+ S
Sbjct: 260 GIKPTEIALLAIFPAISNLGALELCQLVHMYGEKSGLNASDIRIRNSLLDTYAKCGCMES 319
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
++F +I+ + +NLVSWTS+IS FAMHGM K A+E + K LKPNR+TFLSVLNAC
Sbjct: 320 IXRVFGEIAAKSRNLVSWTSVISAFAMHGMAKEALE----ILKECLKPNRITFLSVLNAC 375
Query: 305 SHGGL-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
SHGGL HYG L+DMLGRAGRL++AEK+AL P ++ +V
Sbjct: 376 SHGGLVEEGRLKFFAKMVNEYQMSPDVKHYGGLIDMLGRAGRLDEAEKMALEFPDDVVNV 435
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ R LLGACSFHGNVEMG RVTRK+LEMER GGDYVL+ NI AGVGR+ D ER+RR+M
Sbjct: 436 VIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAGVGRFWDVERVRRLM 495
Query: 402 DERNALKFPGRSLV 415
DERNA K PG SLV
Sbjct: 496 DERNASKLPGLSLV 509
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/438 (46%), Positives = 275/438 (62%), Gaps = 44/438 (10%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSF 69
+IHS L+ ++ LL YS P++A L++ + D++
Sbjct: 45 QIHSQLVAHQVFDRRPTPWHALLKAYSHGPFPQEALNLFRDAHRNMAD---------DTY 95
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
+ F +R C L++P G QLH ++ + GF+ H YV+T+L+N YV G L D+ FDE+
Sbjct: 96 AFMFSLRACAGLAWPWTGAQLHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEM 155
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MN 179
P +N+V+WNVMITG GE+EYAR LFE MP RNVVSWTG++DGYTR +
Sbjct: 156 PVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLR 215
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
R P+EIT+LAV+PAI G + + +HGY EK G DIRV N LID YAK
Sbjct: 216 RMMAEGISPTEITVLAVVPAISDIGRILMGETLHGYCEKNGL-VLDIRVGNSLIDLYAKI 274
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G I S+LK+F + + R+NLVSWTSIISGFAMHG+ AVE F M++ G++PNRVTFLS
Sbjct: 275 GSIQSSLKVFHGM-LNRRNLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTFLS 333
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
VLNACSHGGL H+GC++DMLGRAGRL +AE++ G+P E
Sbjct: 334 VLNACSHGGLVEQGVEFFKSMVYEYNINPEIKHFGCIIDMLGRAGRLCEAEQVIGGLPME 393
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
+ +V R LL CS +G VEMG+R +K+L ER +GGD+V++ N+L +GR+ DAER
Sbjct: 394 VNSIVW-RTLLACCSKYGEVEMGKRAMKKILHTERESGGDFVVVSNMLTELGRFSDAERS 452
Query: 398 RRVMDERNALKFPGRSLV 415
R+++DERNA+K PG +LV
Sbjct: 453 RKLLDERNAVKVPGLALV 470
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 276/423 (65%), Gaps = 52/423 (12%)
Query: 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-----------DSFTYSFLIRTC 78
T L + + +P +AFL + Y+H PL L D+F ++F+++ C
Sbjct: 436 TALKVFDQSPAPWRAFL------KAYSHGPFPLEALHLFKHARQHLADDTFVFTFVLKAC 489
Query: 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
L + G QLHA++ + GF+ H YV+TAL+N+YV L ++ K+FDE+P +N+V+WN
Sbjct: 490 AGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWN 549
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEP 188
VMITG WGE+EYAR LF++MPCRNVVSWTG++DGYTR + P
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
SEIT+LAV+PAI G + ++++GY EK+G + D RV N LID YAK G + ++LK+
Sbjct: 610 SEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMS-DARVGNSLIDLYAKIGSVQNSLKV 668
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F+++ ++R+NLVSWTSIISGFAMHG+ A+E F M++ G+KPNR+TFLSV+NACSHGG
Sbjct: 669 FDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGG 727
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L H+GC++DMLGRAGRL +AE+I G+P E+ +V V RI
Sbjct: 728 LVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEV-NVTVWRI 786
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LLG CS +G V MGER + + ++ER +GGD+ ++ N+L +GR+ DAE+ R+++D+R
Sbjct: 787 LLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKI 846
Query: 407 LKF 409
+K
Sbjct: 847 VKL 849
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 210/411 (51%), Gaps = 44/411 (10%)
Query: 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80
L+ + +N+L+ YS + K+ L+K +Q + D T +I C
Sbjct: 1002 LVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQA--------DKVTMVKVISACTH 1053
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L ++ + I + VY+ L++ Y +G L+ + K+F ++ ++N VT N M
Sbjct: 1054 LGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAM 1113
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSE 190
IT K G L A+ +F+++P ++++SW+ ++ Y++ + + A +P
Sbjct: 1114 ITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDA 1173
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+ I +VL A GA+ + IH Y + A D + N LID +AKCGC+ AL++F
Sbjct: 1174 VVIASVLSACAHLGALDLGKWIHDYVRRNNIKA-DTIMENSLIDMFAKCGCVQEALQVFT 1232
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
D+ E K+ +SW SII G A +G A++ F M G +PN VTFL VL AC++ L
Sbjct: 1233 DM--EEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLV 1290
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGC+VD+L RAG+LE+A +P D VV RILL
Sbjct: 1291 EEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLA-PDPVVWRILL 1349
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
GAC HGNV + E T+K+ E++ GN D +L+ NI A R+ DA +RR
Sbjct: 1350 GACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVRR 1400
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 164/339 (48%), Gaps = 46/339 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+NTLL + +D+PK A + YK+ Q+ ++P D+ T+ F+++ C P
Sbjct: 905 TFLWNTLLRGLAQSDAPKDAIVFYKKAQE------KGMKP--DNLTFPFVLKACAKTCAP 956
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H + K+GF ++V+ +L+ +Y + G L + +F+E+ +++V+WN +I G
Sbjct: 957 KEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGY 1016
Query: 145 VKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSNGAST-----EPSEITILA 195
+ L+ +LF+ M V V+ ++ T + + A E + I +
Sbjct: 1017 SQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDV 1076
Query: 196 VLPAIWQNGAVRNCQLIHG---YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
L + R QL + + + N + N +I YAK G + SA K+F+ I
Sbjct: 1077 YLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTL---NAMITAYAKGGNLVSAKKIFDQI 1133
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHY 311
K+L+SW+S+I ++ ++E F +MQ+ +KP+ V SVL+AC+H G L
Sbjct: 1134 P--NKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDL 1191
Query: 312 G--------------------CLVDMLGRAGRLEQAEKI 330
G L+DM + G +++A ++
Sbjct: 1192 GKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQV 1230
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 92/202 (45%), Gaps = 10/202 (4%)
Query: 109 LVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVKWGEL---EYARSLFEEMPCRN 164
+++M G L ++ ++ + LP E N+ W +++ K+GE+ E A + ++ +
Sbjct: 755 IIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERES 814
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ + + T + R + A + ++ Q + + +H + G +
Sbjct: 815 GGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKL--QEAVMEAVKKLHAHLVVSGLHNC 872
Query: 225 DIRVSNCLIDTYA-KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
+S +I YA + SA K+F+ I E W +++ G A K A+ ++
Sbjct: 873 QYAMSK-VIRLYALHQSDLVSAHKVFKQI--ESPTTFLWNTLLRGLAQSDAPKDAIVFYK 929
Query: 284 RMQKVGLKPNRVTFLSVLNACS 305
+ Q+ G+KP+ +TF VL AC+
Sbjct: 930 KAQEKGMKPDNLTFPFVLKACA 951
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 276/423 (65%), Gaps = 52/423 (12%)
Query: 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-----------DSFTYSFLIRTC 78
T L + + +P +AFL + Y+H PL L D+F ++F+++ C
Sbjct: 436 TALKVFDQSPAPWRAFL------KAYSHGPFPLEALHLFKHARQHLADDTFVFTFVLKAC 489
Query: 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
L + G QLHA++ + GF+ H YV+TAL+N+YV L ++ K+FDE+P +N+V+WN
Sbjct: 490 AGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWN 549
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEP 188
VMITG WGE+EYAR LF++MPCRNVVSWTG++DGYTR + P
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
SEIT+LAV+PAI G + ++++GY EK+G + D RV N LID YAK G + ++LK+
Sbjct: 610 SEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMS-DARVGNSLIDLYAKIGSVQNSLKV 668
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F+++ ++R+NLVSWTSIISGFAMHG+ A+E F M++ G+KPNR+TFLSV+NACSHGG
Sbjct: 669 FDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGG 727
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L H+GC++DMLGRAGRL +AE+I G+P E+ +V V RI
Sbjct: 728 LVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEV-NVTVWRI 786
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LLG CS +G V MGER + + ++ER +GGD+ ++ N+L +GR+ DAE+ R+++D+R
Sbjct: 787 LLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKI 846
Query: 407 LKF 409
+K
Sbjct: 847 VKL 849
>gi|3249111|gb|AAC24094.1| T12M4.7 [Arabidopsis thaliana]
Length = 412
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/382 (51%), Positives = 243/382 (63%), Gaps = 35/382 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
+F YS L + L+ P S + + TALV MY+ G + D+ K+FD
Sbjct: 31 NFFYSILCFDAILLAKPLFMLTSSTTNSNDSISCLITIRTALVGMYLVGGNMIDAHKVFD 90
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+PERN VTWNVMITGL G+ E A E+MP R VVSWT I+DGY R+++ A
Sbjct: 91 EMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKEAILL 150
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ +P+EITILA+LPA+W G ++ C +H Y KRGF DIRV+N LID Y
Sbjct: 151 FSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAY 210
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA K F +I RKNLVSWT++IS FA+HGMGK AV F+ M+++GLKPNRVT
Sbjct: 211 AKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGLKPNRVT 270
Query: 297 FLSVLNACSHGGL-----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
+SVLNACSHGGL HYGCLVDML R GRLE+AEKIAL
Sbjct: 271 MISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEEAEKIALE 330
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
IP E VV R+LLGACS + + E+ ERVTRK++E+ER +GGDYVLM NI G GR++D
Sbjct: 331 IPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFCGTGRFLD 389
Query: 394 AERLRRVMDERNALKFPGRSLV 415
A+R R+ MD R K PG S V
Sbjct: 390 AQRFRKQMDVRGVAKLPGHSQV 411
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 134/309 (43%), Gaps = 54/309 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ Y+ D PK+A LL+ ++ + ++P + T ++ L +
Sbjct: 131 WTTIIDGYARVDKPKEAILLFSRMV-----ACDAIKP--NEITILAILPAVWNLGDLKMC 183
Query: 88 TQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELP--ERNLVTWNVMITGL 144
+HA + K GF + V +L++ Y G ++ + K F E+P +NLV+W MI+
Sbjct: 184 GSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAF 243
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G + A S+F++M +P+ +T+++VL A +G
Sbjct: 244 AIHGMGKEAVSMFKDM---------------------ERLGLKPNRVTMISVLNAC-SHG 281
Query: 205 AVRNCQLIHGYGEKRGFNAF----DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
+ + + + N + D++ CL+D + G + A K+ +I +E K +V
Sbjct: 282 GLAEEEFLEFFNTM--VNEYKITPDVKHYGCLVDMLRRKGRLEEAEKIALEIPIEEKAVV 339
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR 320
W ++ +++ + A ER+ + ++ R SHGG Y + ++
Sbjct: 340 -WRMLLGACSVYDDAELA----ERVTRKLMELER----------SHGG-DYVLMSNIFCG 383
Query: 321 AGRLEQAEK 329
GR A++
Sbjct: 384 TGRFLDAQR 392
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/431 (44%), Positives = 272/431 (63%), Gaps = 44/431 (10%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSF 69
+IHS L+ ++ LL YS P+ A L++ H+ D++
Sbjct: 40 QIHSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFR---------HARWHAADDTY 90
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++F ++ C L +P QLH ++ + GF+ YV+TALVN+Y+ G L DS F+E+
Sbjct: 91 AFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEM 150
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----- 184
P +N V+WNV+ITG WGE+EYAR LFE MPCRNVVSW+G++DGYTR R A
Sbjct: 151 PVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFR 210
Query: 185 -----STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
PSEIT+LAV+PA+ G + + +HGY EK G +D+RV N LID YAK
Sbjct: 211 RMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGL-VWDVRVGNSLIDLYAKI 269
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G I ++L++F+++ ++R+NLVSWTSIISGFAMHG+ AVE F M++ G++PNR+TFLS
Sbjct: 270 GSIQNSLRVFDEM-LDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLS 328
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
VL+ACSHGGL H+GC++DMLGRAGRL +AE+I P E
Sbjct: 329 VLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVE 388
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
+ + V R LLG CS +G VEMGER +K+L +ER GGD+V++ N+L + R+ DAE +
Sbjct: 389 V-NATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIV 447
Query: 398 RRVMDERNALK 408
R+++D+RN++K
Sbjct: 448 RKLVDQRNSVK 458
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 215/420 (51%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ YS + K L+K +Q + D T ++ C L ++
Sbjct: 621 WNSLICGYSQCNRFKDILALFKLMQNEGVKA--------DKVTMIKVVSACTRLGDYSMA 672
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ I + VY+ LV+ + G L+ + K+F + RN+VT N MI K
Sbjct: 673 DYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKG 732
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVL 197
++ AR +F+++P ++++SW+ ++ GY++ N + A +P I I +V+
Sbjct: 733 QDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVV 792
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
+ GA+ + +H Y + A D + N LID Y KCG AL++F+++ + K
Sbjct: 793 SSCAHLGALDLGKWVHEYVRRNNIKA-DTIMENSLIDMYMKCGSAKEALQVFKEM--KEK 849
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ +SW SII G A +G K ++ F+ M G +PN VTFL VL AC++ L
Sbjct: 850 DTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHF 909
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRAG+LE+A + +P + D VV RILLG+C+ HG
Sbjct: 910 ESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPID-PDPVVWRILLGSCNTHG 968
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+V + E VT+K+ E+E N G+Y L+ N A R+ +A +R+ M + + K PG S V
Sbjct: 969 DVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAV 1028
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 153/300 (51%), Gaps = 24/300 (8%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N L+ + +D+P A YK+ Q + P D+ T+ F+++ C ++
Sbjct: 517 TFLWNILIRGLAQSDAPADAIAFYKKAQG------GGMVP--DNLTFPFILKACARINAL 568
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
N G Q+H I+K+G S ++V+ +L+++Y + G L + +FDE+ +++V+WN +I G
Sbjct: 569 NEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGY 628
Query: 145 VKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
+ + +LF+ M V V+ ++ TR+ + A I + +
Sbjct: 629 SQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDV 688
Query: 201 WQNGAV-----RNCQLIHGYGEKRGFN--AFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ + R QL EK FN +I N +I YAK I SA K+F+ I
Sbjct: 689 YLGNTLVDYFGRRGQL--QSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIP 746
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
+K+L+SW+S+ISG++ A+E F +MQ+ +KP+ + SV+++C+H G L G
Sbjct: 747 --KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 804
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 47/250 (18%)
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+FD++ WN++I GL + + P D ++
Sbjct: 505 AHKVFDQIEAPTTFLWNILIRGLAQ-----------SDAPA----------DAIAFYKKA 543
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
G P +T +L A + A+ + +H + K G + DI VSN LI YA CG
Sbjct: 544 QGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS-DIFVSNSLIHLYAACGN 602
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A +F+++ V K++VSW S+I G++ K + F+ MQ G+K ++VT + V+
Sbjct: 603 LCYARSVFDEMVV--KDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVV 660
Query: 302 NACSHGG--------------------LHYG-CLVDMLGRAGRLEQAEKIALGIPSEITD 340
+AC+ G ++ G LVD GR G+L+ AEK+ + ++ +
Sbjct: 661 SACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM--KVRN 718
Query: 341 VVVRRILLGA 350
+V ++ A
Sbjct: 719 IVTMNAMIAA 728
>gi|48427660|gb|AAT42379.1| At1g09220 [Arabidopsis thaliana]
Length = 338
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/338 (54%), Positives = 227/338 (67%), Gaps = 35/338 (10%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY+ G + D+ K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT I
Sbjct: 1 MYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTI 60
Query: 172 LDGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
+DGY R+++ A + +P+EITILA+LPA+W G ++ C +H Y KRG
Sbjct: 61 IDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRG 120
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
F DIRV+N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGK AV
Sbjct: 121 FVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVS 180
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDM 317
F+ M+++GLKPNRVT +SVLNACSHGGL HYGCLVDM
Sbjct: 181 MFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDM 240
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
L R GRLE+AEKIAL IP E VV R+LLGACS + + E+ ERVTRK++E+ER +GGD
Sbjct: 241 LRRKGRLEEAEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGD 299
Query: 378 YVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVLM NI G GR++DA+R R+ MD R K PG S V
Sbjct: 300 YVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 337
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 134/309 (43%), Gaps = 54/309 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ Y+ D PK+A LL+ ++ + ++P + T ++ L +
Sbjct: 57 WTTIIDGYARVDKPKEAILLFSRMV-----ACDAIKP--NEITILAILPAVWNLGDLKMC 109
Query: 88 TQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELP--ERNLVTWNVMITGL 144
+HA + K GF + V +L++ Y G ++ + K F E+P +NLV+W MI+
Sbjct: 110 GSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAF 169
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G + A S+F++M +P+ +T+++VL A +G
Sbjct: 170 AIHGMGKEAVSMFKDM---------------------ERLGLKPNRVTMISVLNAC-SHG 207
Query: 205 AVRNCQLIHGYGEKRGFNAF----DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
+ + + + N + D++ CL+D + G + A K+ +I +E K +V
Sbjct: 208 GLAEEEFLEFFNTM--VNEYKITPDVKHYGCLVDMLRRKGRLEEAEKIALEIPIEEKAVV 265
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR 320
W ++ +++ + A ER+ + ++ R SHGG Y + ++
Sbjct: 266 -WRMLLGACSVYDDAELA----ERVTRKLMELER----------SHGG-DYVLMSNIFCG 309
Query: 321 AGRLEQAEK 329
GR A++
Sbjct: 310 TGRFLDAQR 318
>gi|297849224|ref|XP_002892493.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338335|gb|EFH68752.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 337
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 185/338 (54%), Positives = 226/338 (66%), Gaps = 35/338 (10%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY+ G + D+ K+FDE+PERN VTWNVMITGL G+ E A E+M R VVSWT I
Sbjct: 1 MYLVGGNMIDAYKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMLNRTVVSWTTI 60
Query: 172 LDGYTRMNRSNGAS-----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
+DGY R+N+ A+ +P+EITILA+LPA+W G ++ C +H Y KRG
Sbjct: 61 IDGYARVNKPKEATLLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRG 120
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
F DIRV+N LID YAKCGCI SA K F +I RKNLVSWT++IS FAMHGMGK AV
Sbjct: 121 FVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAMHGMGKEAVN 180
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDM 317
F+ M+++GLKPNRVT +SVLNACSHGGL HYGCLVDM
Sbjct: 181 MFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLKFFNKMVNKYKITPDVKHYGCLVDM 240
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
L R GRLE+AEKIAL IP + VV R+LLGAC+ + + EM ERVTRK++E+ER +GGD
Sbjct: 241 LRRKGRLEEAEKIALEIPID-QKAVVWRMLLGACNVYDDAEMAERVTRKLMELERSHGGD 299
Query: 378 YVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVLM NI G GR+ DA+R R++MD R K PG S V
Sbjct: 300 YVLMSNIFCGNGRFSDAQRFRKLMDVRGVAKLPGHSQV 337
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 141/318 (44%), Gaps = 55/318 (17%)
Query: 20 SLLHHTLL-FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC 78
+L+ T++ + T++ Y+ + PK+A LL+ ++ + ++P + T ++
Sbjct: 48 KMLNRTVVSWTTIIDGYARVNKPKEATLLFSRMV-----ACDAIKP--NEITILAILPAV 100
Query: 79 VTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELP--ERNLV 135
L + +HA + K GF + V +L++ Y G ++ + K F E+P +NLV
Sbjct: 101 WNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLV 160
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
+W MI+ G + A ++F++M +P+ +T+++
Sbjct: 161 SWTTMISAFAMHGMGKEAVNMFKDM---------------------ERLGLKPNRVTMIS 199
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAF----DIRVSNCLIDTYAKCGCIFSALKLFED 251
VL A +G + + + + + N + D++ CL+D + G + A K+ +
Sbjct: 200 VLNAC-SHGGLAEEEFLKFF--NKMVNKYKITPDVKHYGCLVDMLRRKGRLEEAEKIALE 256
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311
I +++K +V W ++ ++ + A ER+ + ++ R SHGG Y
Sbjct: 257 IPIDQKAVV-WRMLLGACNVYDDAEMA----ERVTRKLMELER----------SHGG-DY 300
Query: 312 GCLVDMLGRAGRLEQAEK 329
+ ++ GR A++
Sbjct: 301 VLMSNIFCGNGRFSDAQR 318
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 169/375 (45%), Positives = 241/375 (64%), Gaps = 44/375 (11%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
P +A L+K +Q D+F + F+++ C L + G QLHA++ + GF+
Sbjct: 181 PLEALHLFKHARQHLAD---------DTFVFKFVLKACAGLGWHRAGAQLHALVVQKGFE 231
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
H YV+ AL+N+YV L ++ K+FDE+P +N+V+WNVMITG W E+EYAR LF++M
Sbjct: 232 FHAYVHIALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQM 291
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
PCRNVVSWTG++DGYT + PSEI +LAV+PAI G + +
Sbjct: 292 PCRNVVSWTGLIDGYTHACLYAEALTLLRHMMAGGISPSEIIVLAVIPAISNLGGIVMGE 351
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
+++GY EK+G + D+RV N LID YAK G + ++LK+F+++ ++R+NLVSWTSIISGFA
Sbjct: 352 MLNGYCEKKGIMS-DVRVGNSLIDLYAKIGSVQNSLKVFDEM-LDRRNLVSWTSIISGFA 409
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------------- 309
MHG+ A+E F M++ G+KPNR+TFLSV+N CSHGGL
Sbjct: 410 MHGLSVEALELFAEMRRAGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEI 469
Query: 310 -HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
H+G ++DMLGRAGRL +AE+I G+P E+ +V V RILLG S +G VEMGER + +
Sbjct: 470 KHFGYIIDMLGRAGRLCEAEQIIEGLPMEV-NVTVWRILLGCFSKYGEVEMGERAIKMIS 528
Query: 369 EMERGNGGDYVLMYN 383
++ER +GGD++ Y
Sbjct: 529 DLERESGGDFLQGYE 543
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 169/375 (45%), Positives = 241/375 (64%), Gaps = 44/375 (11%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
P +A L+K +Q D+F + F+++ C L + G QLHA++ + GF+
Sbjct: 181 PLEALHLFKHARQHLAD---------DTFVFKFVLKACAGLGWHRAGAQLHALVVQKGFE 231
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
H YV+ AL+N+YV L ++ K+FDE+P +N+V+WNVMITG W E+EYAR LF++M
Sbjct: 232 FHAYVHIALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQM 291
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
PCRNVVSWTG++DGYT + PSEI +LAV+PAI G + +
Sbjct: 292 PCRNVVSWTGLIDGYTHACLYAEALTLLRHMMAGGISPSEIIVLAVIPAISNLGGIVMGE 351
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
+++GY EK+G + D+RV N LID YAK G + ++LK+F+++ ++R+NLVSWTSIISGFA
Sbjct: 352 MLNGYCEKKGIMS-DVRVGNSLIDLYAKIGSVQNSLKVFDEM-LDRRNLVSWTSIISGFA 409
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------------- 309
MHG+ A+E F M++ G+KPNR+TFLSV+N CSHGGL
Sbjct: 410 MHGLSVEALELFAEMRRAGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEI 469
Query: 310 -HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
H+G ++DMLGRAGRL +AE+I G+P E+ +V V RILLG S +G VEMGER + +
Sbjct: 470 KHFGYIIDMLGRAGRLCEAEQIIEGLPMEV-NVTVWRILLGCFSKYGEVEMGERAIKMIS 528
Query: 369 EMERGNGGDYVLMYN 383
++ER +GGD++ Y
Sbjct: 529 DLERESGGDFLQGYE 543
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 157/319 (49%), Positives = 221/319 (69%), Gaps = 35/319 (10%)
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------M 178
+P +N+V+WNV+ITG WGE+EYAR LF++MPCRNVVSWTG++DGYTR
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
PSEIT+LAV+PAI G + +++HGY K+G + D RV N LID YAK
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMS-DARVGNSLIDLYAK 119
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
G + ++LK+F+++ ++R+NLVSWTSIISGFAMHG+ A+E F M++ G++PNR+TFL
Sbjct: 120 IGSVQNSLKVFDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFL 178
Query: 299 SVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPS 336
SV+NACSHGGL H+GC++DMLGRAGRL +AE+I G+P
Sbjct: 179 SVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPV 238
Query: 337 EITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396
E+ +V+V RILLG CS +G VEMG+R + + ++ER +GGD+ ++ N+L +GR+ DAE+
Sbjct: 239 EV-NVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQ 297
Query: 397 LRRVMDERNALKFPGRSLV 415
R+++DER +K PG +LV
Sbjct: 298 ARKLLDERKIVKVPGLALV 316
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 216/427 (50%), Gaps = 44/427 (10%)
Query: 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80
L+ + +N+L+ YS + K+ L++ +Q + D T +I C
Sbjct: 472 LVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQA--------DKVTMVKVISACTH 523
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L ++ + I + + VY+ L++ Y +G L+ + K+F ++ ++N VT N M
Sbjct: 524 LGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAM 583
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSE 190
I K G L A+ +F+++P ++++SW+ ++ Y++ + + A +P
Sbjct: 584 IHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDA 643
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+ I +VL A GA+ + IH Y + D + N LID +AKCGC+ AL++F
Sbjct: 644 VVIASVLSACAHLGALDLGKWIHDYVRRNNIKT-DTIMENSLIDMFAKCGCMQEALQVFT 702
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ E K+ +SW SII G A +G A+ F M G +PN VTFL VL AC++ L
Sbjct: 703 EM--EEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLV 760
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGC+V +L RAG+LE+A+ +P D VV RILL
Sbjct: 761 QEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLA-PDPVVWRILL 819
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
GAC HGNV + E T+K+ E++ N GDY+L+ NI A R+ DA +R+ M + K
Sbjct: 820 GACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRK 879
Query: 409 FPGRSLV 415
P S+V
Sbjct: 880 SPACSVV 886
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 165/339 (48%), Gaps = 46/339 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+NTLL + +D+PK A + YK+ Q+ ++P D+ T+ F+++ C P
Sbjct: 375 TFLWNTLLRGLAQSDAPKDAIVFYKKAQE------KGMKP--DNMTFPFVLKACAKTYAP 426
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H+ + K+GF ++V+ +L+++Y + G L + +FDE+ +++V+WN +I G
Sbjct: 427 KEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGY 486
Query: 145 VKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSNGAST-----EPSEITILA 195
+ + +LFE M V V+ ++ T + + A E + I +
Sbjct: 487 SQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDV 546
Query: 196 VLPAIWQNGAVRNCQLIHG---YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
L + R QL + + + N + N +I YAK G + SA K+F+ I
Sbjct: 547 YLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTL---NAMIHAYAKGGNLVSAKKIFDQI 603
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHY 311
K+L+SW+S+I ++ ++E F +MQ+ +KP+ V SVL+AC+H G L
Sbjct: 604 P--NKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDL 661
Query: 312 G--------------------CLVDMLGRAGRLEQAEKI 330
G L+DM + G +++A ++
Sbjct: 662 GKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQV 700
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 46/264 (17%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMY-VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LHA + G + Y + ++ Y + L + K+F+++ WN ++ GL +
Sbjct: 329 KLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQ- 387
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ P +V + ++ +P +T VL A + A +
Sbjct: 388 ----------SDAPKDAIVFY----------KKAQEKGMKPDNMTFPFVLKACAKTYAPK 427
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + K GF DI VSN LI YA CG + A +F+++ V K++VSW S+I
Sbjct: 428 EGEQMHSHVIKLGF-LLDIFVSNSLIHLYAACGDLVCARSIFDEMLV--KDVVSWNSLIG 484
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG------------------- 308
G++ K + FE MQ ++ ++VT + V++AC+H G
Sbjct: 485 GYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEV 544
Query: 309 -LHYG-CLVDMLGRAGRLEQAEKI 330
++ G L+D R G+L+ AEK+
Sbjct: 545 DVYLGNTLIDYYCRIGQLQSAEKV 568
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 54/253 (21%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE-LPERNLVTWNVMITGL 144
+G LH K G S V +L+++Y +G +++S K+FDE L RNLV+W +I+G
Sbjct: 90 MGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGF 149
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G A LF EM A P+ IT L+V+ A G
Sbjct: 150 AMHGLSVEALELFAEM---------------------RRAGIRPNRITFLSVINACSHGG 188
Query: 205 AVRNC-----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
V +++ Y F C+ID + G + A ++ E + VE N+
Sbjct: 189 LVEQGLAFFKSMVYEYNIDPEIKHF-----GCIIDMLGRAGRLCEAEQIIEGLPVE-VNV 242
Query: 260 VSWTSIISGFAMHG---MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD 316
+ W ++ + +G MGK A++ +++ G + L +
Sbjct: 243 IVWRILLGCCSKYGEVEMGKRAIKMISDLER------------------ESGGDFAVLSN 284
Query: 317 MLGRAGRLEQAEK 329
+L GR AE+
Sbjct: 285 VLNELGRFSDAEQ 297
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/423 (38%), Positives = 246/423 (58%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++N+ L + DSP A +L+ +L+Q + P D+FT S ++R C+ L
Sbjct: 93 TFVWNSCLKALAEGDSPIDAIMLFYRLRQ---YDVCP-----DTFTCSSVLRACLNLLDL 144
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+ G LH V+ KVGF+S++Y+ +V++Y S G + ++ LF+++P+R++VTWN+MI L
Sbjct: 145 SNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQL 204
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITIL 194
+K G+ E A LF MP RNV SWT ++ GY + ++ A + +E+T++
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
AVL A GA+ IH Y + GF ++R+SN LID Y KCGC+ A K+FE++
Sbjct: 265 AVLAACADLGALDLGMRIHEYSNRHGFKR-NVRISNTLIDMYVKCGCLEEACKVFEEM-- 321
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E + +VSW+++I G AMHG + A+ F M +VG++PN VTF+ +L+ACSH GL
Sbjct: 322 EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGR 381
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+L RAG L +A + L +P + + VV LLGAC
Sbjct: 382 RFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMK-PNGVVWGALLGACR 440
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NVEM E + +LE++ N G YV++ NI A GR+ D R+R+ M +R K PG
Sbjct: 441 VHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGW 500
Query: 413 SLV 415
S +
Sbjct: 501 SSI 503
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/423 (38%), Positives = 246/423 (58%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++N+ L + DSP A +L+ +L+Q + P D+FT S ++R C+ L
Sbjct: 93 TFVWNSCLKALAEGDSPIDAIMLFYRLRQ---YDVCP-----DTFTCSSVLRACLNLLDL 144
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+ G LH V+ KVGF+S++Y+ +V++Y S G + ++ LF+++P+R++VTWN+MI L
Sbjct: 145 SNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQL 204
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITIL 194
+K G+ E A LF MP RNV SWT ++ GY + ++ A + +E+T++
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
AVL A GA+ IH Y + GF ++R+SN LID Y KCGC+ A K+FE++
Sbjct: 265 AVLAACADLGALDLGMRIHEYSNRHGFKR-NVRISNTLIDMYVKCGCLEEACKVFEEM-- 321
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E + +VSW+++I G AMHG + A+ F M +VG++PN VTF+ +L+ACSH GL
Sbjct: 322 EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGR 381
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+L RAG L +A + L +P + + VV LLGAC
Sbjct: 382 RFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMK-PNGVVWGALLGACR 440
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NVEM E + +LE++ N G YV++ NI A GR+ D R+R+ M +R K PG
Sbjct: 441 VHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGW 500
Query: 413 SLV 415
S +
Sbjct: 501 SSI 503
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 247/462 (53%), Gaps = 61/462 (13%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQ---------IYTHSHS 60
+IH+H++ SL L +L A ++++QL+ I T++H+
Sbjct: 25 KIHAHIVKL-SLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83
Query: 61 PLRPLF---------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
PL D FT+ F+I++C L LG Q+HA + K G ++H
Sbjct: 84 HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAIT 143
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
AL++MY G + + ++++E+ ER+ V+WN +I+G V+ G+++ AR +F+EMPCR +
Sbjct: 144 ENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTI 203
Query: 166 VSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
VSWT +++GY R EP EI++++VLPA Q GA+ + IH Y
Sbjct: 204 VSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKY 263
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
EK GF + V N L++ YAKCGCI A LF + K+++SW+++I G A HG G
Sbjct: 264 SEKSGFLK-NAGVFNALVEMYAKCGCIDEAWGLFNQMI--EKDVISWSTMIGGLANHGKG 320
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
AA+ FE MQK G+ PN VTF+ VL+AC+H GL HYGC
Sbjct: 321 YAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGC 380
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
LVD+LGR+G++EQA L +P + D LL +C H N+E+ ++L++E
Sbjct: 381 LVDLLGRSGQVEQALDTILKMPMQ-PDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPE 439
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G+YVL+ NI A + ++ +R+++ + K PG SL+
Sbjct: 440 ESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLI 481
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 248/463 (53%), Gaps = 78/463 (16%)
Query: 21 LLHH-----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
L HH T + NTL+ SL+ +P + + QL++ T L P DSFT++F +
Sbjct: 58 LFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPT-----LSP--DSFTFAFAL 110
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+ + G QLH+ + GF +H++V T L++MY G + ++FDE+ E N+V
Sbjct: 111 KAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVV 170
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR--------------- 180
TWN ++T + G++E A+ +F MP RN+ SW G+L GY +
Sbjct: 171 TWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRD 230
Query: 181 ------------SNGASTEP--------------SEITILAVLPAIWQNGAVRNCQLIHG 214
NG E +E+++ VL A Q GA +++HG
Sbjct: 231 EVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHG 290
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+ EK GF + V+N LIDTY+KCG + A +F+++ V R ++VSWTSII+G AMHG
Sbjct: 291 FVEKAGF-LYVGSVNNALIDTYSKCGNVAMARLVFQNMPVAR-SIVSWTSIIAGLAMHGC 348
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G+ A++ F M++ G++P+ +TF+S+L ACSH GL HYG
Sbjct: 349 GEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYG 408
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+VD+ GRA RL++A + +P + ++ R LLGACS HGN+EM E V ++ EM+
Sbjct: 409 CMVDLYGRAARLQKAYEFICEMPVS-PNAIIWRTLLGACSIHGNIEMAELVKARLAEMDP 467
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N GD+VL+ N+ A G++ D +RR M E + K PG S++
Sbjct: 468 DNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMI 510
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 251/436 (57%), Gaps = 44/436 (10%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
+SH + T+ L+NT++ S + +A LLY ++ S LR FD+++
Sbjct: 91 YSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILA------SDLR--FDTYSL 142
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
F+++ V L ++G Q+H G S ++V TAL+ MY S G + ++ +LFD +
Sbjct: 143 PFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCF 202
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----- 186
R++ WN M+ G K G+++ AR LFE MP RNV+SWT ++ GY +M+R N A T
Sbjct: 203 RDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM 262
Query: 187 -----EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
EP EI +LA L A GA+ + IH Y +K G + + ++N LID YAKCG
Sbjct: 263 QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKI-VPLNNALIDMYAKCGK 321
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I AL++F+++ E K++++WTS+I G A+HG+G+ A+E F M++ +KPN +TF+++L
Sbjct: 322 IEKALEVFKNM--EHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAIL 379
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+AC H GL HYGC++D+LGRAG L++A+++ G+P E
Sbjct: 380 SACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFE-A 438
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ + LL A HG+ E+G++ + ++++E N G+Y L+ NI A ++ +A +R+
Sbjct: 439 NAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRK 498
Query: 400 VMDERNALKFPGRSLV 415
VM + K PG S +
Sbjct: 499 VMRDTGVKKMPGGSCI 514
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 251/436 (57%), Gaps = 44/436 (10%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
+SH + T+ L+NT++ S + +A LLY ++ S LR FD+++
Sbjct: 91 YSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILA------SDLR--FDTYSL 142
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
F+++ V L ++G Q+H G S ++V TAL+ MY S G + ++ +LFD +
Sbjct: 143 PFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCF 202
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----- 186
R++ WN M+ G K G+++ AR LFE MP RNV+SWT ++ GY +M+R N A T
Sbjct: 203 RDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM 262
Query: 187 -----EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
EP EI +LA L A GA+ + IH Y +K G + + ++N LID YAKCG
Sbjct: 263 QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKI-VPLNNALIDMYAKCGK 321
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I AL++F+++ E K++++WTS+I G A+HG+G+ A+E F M++ +KPN +TF+++L
Sbjct: 322 IEKALEVFKNM--EHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAIL 379
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+AC H GL HYGC++D+LGRAG L++A+++ G+P E
Sbjct: 380 SACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFE-A 438
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ + LL A HG+ E+G++ + ++++E N G+Y L+ NI A ++ +A +R+
Sbjct: 439 NAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRK 498
Query: 400 VMDERNALKFPGRSLV 415
VM + K PG S +
Sbjct: 499 VMRDTGVKKMPGGSCI 514
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 155/477 (32%), Positives = 256/477 (53%), Gaps = 78/477 (16%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P + + R+ H + +H NTL+ + +D+P+ + + + ++++ T +P
Sbjct: 52 PDALDYARRLFLHFPNPDVFMH-----NTLIRGLAESDTPQNSLITFVEMRRRLT---AP 103
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
L DSF+++FL++ + G QLH G +H++V T LV+MY GF+
Sbjct: 104 L----DSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAF 159
Query: 122 SSKLFDEL-------------------------------PERNLVTWNVMITGLVKWGEL 150
+ K+F+E+ P RNL +WNVM+ G K GEL
Sbjct: 160 AKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGEL 219
Query: 151 EYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAI 200
E AR LF EMP ++ VSW+ ++ G+ P+E+++ L A
Sbjct: 220 ELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSAC 279
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
GA+ +++HG+ EK GF + + V+N L+DTY+KCG + A +FE + E++++V
Sbjct: 280 ADAGAIEFGKILHGFIEKSGF-LWMVSVNNALLDTYSKCGNVGMARLVFERMP-EKRSIV 337
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------- 309
SWTS+I+G AMHG G+ A++ F M++ G++P+ + F+S+L ACSH GL
Sbjct: 338 SWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKM 397
Query: 310 -----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
HYGC+VD+ GRAG+L++A + + +P + ++ R LLGACS HGNV+
Sbjct: 398 KDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPV-LPTAIIWRTLLGACSIHGNVK 456
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ERV ++ E++ N GD+VL+ NI A G++ D +RR M ++ K PG S++
Sbjct: 457 LAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMI 513
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 164/421 (38%), Positives = 223/421 (52%), Gaps = 50/421 (11%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFT-------------YSFLIRTCVTLSYPNLG 87
PK LY +L Q Y+ SH P F +T ++FL C +LS G
Sbjct: 43 PKPTVFLYNKLIQAYS-SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQG 101
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH K GF V+ TALV+MY LG L + K FDE+ R++ TWN MI G +
Sbjct: 102 RMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARC 161
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------STE--PSEITILAV 196
G+LE A LF MP RNV SWT ++ GY + + A TE P+E+T+ +V
Sbjct: 162 GDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
LPA GA+ + I Y G+ ++ VSN L++ YA+CG I A +FE+I R
Sbjct: 222 LPACANLGALEVGERIEVYARGNGYFK-NLYVSNALLEMYARCGRIDKAWGVFEEID-GR 279
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+NL SW S+I G A+HG A+E F +M + G P+ VTF+ VL AC+HGG+
Sbjct: 280 RNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHF 339
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC+VD+LGRAG L +A + L +P E D VV LLGACSFH
Sbjct: 340 FESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPME-PDSVVWGTLLGACSFH 398
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
G+VE+ E+ + E+E N G+YV++ NI A GR+ RLR++M K G S
Sbjct: 399 GHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSF 458
Query: 415 V 415
+
Sbjct: 459 I 459
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 246/454 (54%), Gaps = 73/454 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ NTL+ +D P+ + L + ++++ +S SP DSF+++F+++ L
Sbjct: 70 VFMHNTLIRGLYESDRPQDSLLKFIEMRR---NSFSPP----DSFSFAFIVKAAANLRSV 122
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+G QLH G +H++V T L++MY GF+ + K+FDE+PE N + WN M+T
Sbjct: 123 RVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTAC 182
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------------------------ 180
+ G+++ R LF+ MP RN++SW +L GYT+
Sbjct: 183 CRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIV 242
Query: 181 ---SNGASTE--------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
NG E P+E ++ VL A Q GA+ +++HG+ EK G A
Sbjct: 243 GFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGL-A 301
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
+ + V+N L+DTY+KCG + A +FE I ER N+VSWTS+++ AMHG G+ A+ F
Sbjct: 302 WIVSVNNALLDTYSKCGNVLMAQLVFERIMNER-NIVSWTSMMAALAMHGHGEEAIGIFH 360
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
+M++ G++P+ + F+S+L ACSH GL HYGC+VD+ GRA
Sbjct: 361 KMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRA 420
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G+L++A + +P T ++ R LLGACS HG+V++ E+V ++ E++ N D+VL+
Sbjct: 421 GQLQKAYEFVCQMPIPCT-AIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLL 479
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N A G++ DA +RR M E+ K PG S++
Sbjct: 480 SNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMI 513
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 241/422 (57%), Gaps = 39/422 (9%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ L+N ++ Y A +YKQ+ ++H +P+ P D FT+ F++++C L
Sbjct: 76 NAFLYNAMIRAYKHNKVYVLAITVYKQMLG-HSHGENPIFP--DKFTFPFVVKSCAGLMC 132
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+LG Q+H + K G +S+ V +LV MYV L D+ K+F+E+ ER+ V+WN +I+G
Sbjct: 133 YDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISG 192
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITI 193
V+ G++ AR++FEEM + + SWT I+ GY R+ R EP EI++
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
++VLPA Q GA+ + IH Y +K GF +I V N LI+ YAKCG I +LF+ ++
Sbjct: 253 VSVLPACAQLGALELGKWIHFYADKAGF-LRNICVCNALIEMYAKCGSIDEGRRLFDQMN 311
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
++++SW+++I G A HG A+E F+ MQK ++PN +TF+ +L+AC+H GL
Sbjct: 312 --ERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG 369
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGCLV++LG +GRL+QA ++ +P + D + LL +C
Sbjct: 370 LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMK-PDSAIWGSLLSSC 428
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H N+E+ +LE+E + G+YVL+ N+ A +G++ R+R++M ++ K PG
Sbjct: 429 RSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPG 488
Query: 412 RS 413
S
Sbjct: 489 CS 490
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 242/426 (56%), Gaps = 48/426 (11%)
Query: 27 LFNTLLHFYSLADS-PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ S + + PK + LY +Q + LRP DS+++ F ++ S
Sbjct: 44 LYNNIIKALSSSPTHPKASIFLYNNIQL------AGLRP--DSYSFPFALKAVTRFSSIQ 95
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLG--FLKDSSKLFD--ELPERNLVTWNVMI 141
G QLH+ + G S ++V TA V MY S G + D+ K+FD + ++ WN M+
Sbjct: 96 TGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAML 155
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEI 191
G K G+L AR LFE MP RNV+SWT ++ GY + NR + A + EP EI
Sbjct: 156 NGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEI 215
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+L L A + GA+ + I Y ++ G +I ++N LID YAK G I SAL++FE+
Sbjct: 216 AMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFEN 275
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
++ K +++WT++I+G A+HG+G A+E F RM++ +KPN +TF+++L+ACSH GL
Sbjct: 276 MN--HKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQ 333
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC++D+LGRAG L++A+ + +P E + V+ LL
Sbjct: 334 TGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFE-PNAVIWGSLLA 392
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC+ HG+ E+GE + +LE+E N G+Y L+ NI A GR+ ++ +R+VM + K
Sbjct: 393 ACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGVKKM 452
Query: 410 PGRSLV 415
PG SL+
Sbjct: 453 PGGSLI 458
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/422 (34%), Positives = 241/422 (57%), Gaps = 39/422 (9%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYT-HSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ ++ A L YK++ ++ S +P+ P D FT+ F+I++C L N
Sbjct: 79 LYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFP--DRFTFPFVIKSCSGLVCYN 136
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+HA + K G +S++ + AL++MY L D+ K+FD + ER+ ++WN +I+G V
Sbjct: 137 LGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHV 196
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G++ A +LF+ MP R +VSWT ++ GYTR+ A EP EI+I++
Sbjct: 197 GVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIIS 256
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VLPA Q GA+ + IH Y ++ G + N L++ Y+KCGCI A +LF+ +S
Sbjct: 257 VLPACAQLGALEVGKWIHMYCDRNGL-LRKTSICNALMEMYSKCGCIGQAYQLFDQMS-- 313
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
+ +++SW+++I G A HG + A+E F+RM+K ++PN +TFL +L+AC+H G
Sbjct: 314 KGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLA 373
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGCLVD+LGRAGRL QA + +P + D + LL +C
Sbjct: 374 YFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMK-PDSKIWGSLLSSCRT 432
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
H N+++ + E+E + G+YVL+ NI A + ++ R+R+++ ++ K PG S
Sbjct: 433 HSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSS 492
Query: 414 LV 415
L+
Sbjct: 493 LI 494
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 221/395 (55%), Gaps = 38/395 (9%)
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
Q+ THS + + P D FT+ F+I++C + LG Q+H ++ K G H AL++M
Sbjct: 98 QMLTHSTNSVFP--DKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDM 155
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y G L ++ K+F+E+ R++++WN +I G VK G++ AR LF++MP R +VSWT ++
Sbjct: 156 YTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMI 215
Query: 173 DGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
GY RM A EP EI+I+AVLPA Q GA+ + IH Y +K GF
Sbjct: 216 TGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGF- 274
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ N LI+ YAKCGCI A LF+ + K+++SW+++I G A HG G A++ F
Sbjct: 275 LRKTGICNALIEMYAKCGCIDEAWNLFDQLV--EKDVISWSTMIGGLANHGKGYEAIQLF 332
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
E M KV + PN +TFL VL ACSH GL HYGCL+D+LGR
Sbjct: 333 EEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGR 392
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
+G L QA +P + D + LL +C H N+++ ++++E+E G+YVL
Sbjct: 393 SGCLGQALDTISKMPIK-PDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVL 451
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ N+ A G++ D +R+++ + K PG S +
Sbjct: 452 LANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSI 486
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 136/306 (44%), Gaps = 49/306 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
++HA + K+ ++ T +++ +LG + ++ LF +L N+ T+N +I
Sbjct: 28 KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNR 87
Query: 149 ELEYARSLFEEMPCRN--------------VVSWTGILDGYTRMNRSNGASTEPSE---I 191
A S+F +M + + S TGIL M ++ I
Sbjct: 88 HHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCI 147
Query: 192 TILAVLPAIWQNGAVRN-CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T A++ + G + N C++ + D+ N LI Y K G + SA +LF+
Sbjct: 148 TENALIDMYTKFGDLTNACKVFEEMSHR------DVISWNSLIFGYVKLGQMNSARELFD 201
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGL 309
D+ V + +VSWT++I+G+ G A++ F MQ VG++P+ ++ ++VL AC+ G L
Sbjct: 202 DMPV--RTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGAL 259
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
G L++M + G +++A + + + DV+ ++G
Sbjct: 260 EVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEK--DVISWSTMIG 317
Query: 350 ACSFHG 355
+ HG
Sbjct: 318 GLANHG 323
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 227/405 (56%), Gaps = 43/405 (10%)
Query: 47 LYKQLQQIYTHSHSPLRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
YKQ+ + Y +S + + D FT+ F+++ C L NLG Q+HA K G +SH+
Sbjct: 73 FYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLIT 132
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
AL++MY L D+ LFDE+ ER ++WN +I+G V+ G++ AR+LF+EMP R +
Sbjct: 133 ENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTI 192
Query: 166 VSWTGILDGYTRM----------NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
VSWT I+ GYTR+ A EP E +I++VLPA + GA+ + IH +
Sbjct: 193 VSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMF 252
Query: 216 GEKRGFNAFDIR---VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
+ G +R + N LI+ Y KCGCI A +LF+ + ++++SW+++I G A H
Sbjct: 253 CARNGL----LRRTCICNALIEMYTKCGCIDQACQLFD--QMRGRDVISWSTMIGGLANH 306
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G + A+ FERM++ +KPN +TF+ +L+AC+H G H
Sbjct: 307 GKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEH 366
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
YG LVD+LGRAGRL QA I +P + D + LL +C H N+E+ + E+
Sbjct: 367 YGSLVDLLGRAGRLSQALDIVEKMPMK-PDSKIWGSLLSSCRTHCNIEVAVIAMEHLEEL 425
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E + G+YVL+ NI A +G++ D R+R+++ + K PG SL+
Sbjct: 426 EPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLI 470
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/331 (20%), Positives = 128/331 (38%), Gaps = 80/331 (24%)
Query: 13 SHLLTTNSLLHHTLLFNTLLHFYSLADS-------------------------------- 40
SHL+T N+L+ + LL ++L D
Sbjct: 128 SHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEM 187
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGT 88
P + + + + YT S + L D + ++ C L G
Sbjct: 188 PNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGK 247
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
+H ++ G + AL+ MY G + + +LFD++ R++++W+ MI GL G
Sbjct: 248 WIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHG 307
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA-----IWQN 203
++ A ++FE M N+ +P+ IT + +L A W+
Sbjct: 308 KVREAIAIFERMKQTNI---------------------KPNGITFVGLLSACAHAGFWEE 346
Query: 204 GAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
G L++ K+ F+ +I L+D + G + AL + E + ++ + + W
Sbjct: 347 G------LMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKI-W 399
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
S++S H + AV E +++ L+P+
Sbjct: 400 GSLLSSCRTHCNIEVAVIAMEHLEE--LEPD 428
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 249/456 (54%), Gaps = 55/456 (12%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLF-----------NTLLHFYSLADSPKKAFLLYK 49
SP S+ +R+ S +S + L+F NT L ++ DSP A L+
Sbjct: 43 SPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFY 102
Query: 50 QLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109
+L++ SP D +T SF+++ C L G +H + K+G QS++++ +
Sbjct: 103 RLREFDI---SP-----DHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMI 154
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
V++Y G + + K+FD++P+R+++TWN+MI LVK G+ E A LF EMP RNV SWT
Sbjct: 155 VHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWT 214
Query: 170 GILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
++ GY + +S A P+E+T++AVL A G + + IH + +
Sbjct: 215 SMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS 274
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
G+ +IRV N LID Y KCGC+ A ++F+++ E + +VSW+++I+G A HG + A+
Sbjct: 275 GYEK-NIRVCNTLIDMYVKCGCLEDACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDAL 331
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDM 317
F +M G+KPN VTF+ +L+ACSH G+ HYGC+VD+
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
RAG L++A + + +P + VV LLG C H N+++ E TR + +++ N G
Sbjct: 392 FSRAGLLQEAHEFIMNMPIA-PNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGY 450
Query: 378 YVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
YV++ NI A GR+ D R+R++M +R K PG S
Sbjct: 451 YVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWS 486
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 153/436 (35%), Positives = 233/436 (53%), Gaps = 48/436 (11%)
Query: 18 TNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
+ +LHH+ L+N L+ YS P+ + Q+ HS P + T++
Sbjct: 35 AHKVLHHSPKPTLFLYNKLIQAYS--SHPQHQHQCFSLYSQMLLHSFLP-----NQHTFN 87
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
FL C +LS P+LG LH K GF+ ++ TAL++MY +G L+ + KLFD++P R
Sbjct: 88 FLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVR 147
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------- 184
+ TWN M+ G ++G+++ A LF MP RNVVSWT ++ GY+R + A
Sbjct: 148 GVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRME 207
Query: 185 ---STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P+ +T+ ++ PA GA+ Q + Y K GF ++ VSN +++ YAKCG
Sbjct: 208 QEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFK-NLYVSNAVLEMYAKCGK 266
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A K+F +I R NL SW S+I G A+HG ++ +++M G P+ VTF+ +L
Sbjct: 267 IDVAWKVFNEIGSLR-NLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLL 325
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
AC+HGG+ HYGC+VD+LGRAG+L +A ++ +P +
Sbjct: 326 LACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMK-P 384
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D V+ LLGACSFH NVE+ E + +E N G+YV++ NI A G++ +LR+
Sbjct: 385 DSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRK 444
Query: 400 VMDERNALKFPGRSLV 415
VM K G S +
Sbjct: 445 VMKGSKITKSAGHSFI 460
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 246/438 (56%), Gaps = 43/438 (9%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
+++ + T+ +T L NT++ SL D + ++ + P D+FT+
Sbjct: 65 YAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAITVYRKFWAFCAKP-----DTFTF 119
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
F+++ V +S G Q+H GF S V+V T L+ MY S G L D+ K+FDE+
Sbjct: 120 PFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRV 179
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGA----- 184
R++ WN ++ G K GE++ AR L E MPC RN VSWT ++ GY R R++ A
Sbjct: 180 RDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQ 239
Query: 185 -----STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+ +P E+T+LAVL A G++ + I Y + RG N + ++N +ID YAK
Sbjct: 240 RMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMYAKS 298
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G I AL++FE SV +N+V+WT+II+G A HG G A+ F+RM K G+KPN VTF++
Sbjct: 299 GNITKALEVFE--SVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIA 356
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
+L+ACSH G HYGC++D+LGRAG+L +AE++ +P E
Sbjct: 357 ILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFE 416
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
++ + LL A + H ++++GER +++++E N G+Y+L+ N+ + +GR+ ++ +
Sbjct: 417 -SNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMM 475
Query: 398 RRVMDERNALKFPGRSLV 415
R++M K G S +
Sbjct: 476 RKMMKGIGVKKLAGESSI 493
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 239/454 (52%), Gaps = 74/454 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
++NTL+ S +D+P A L+ ++++ L DSF+++FL++
Sbjct: 70 VFMYNTLIRGLSDSDTPSNALQLFVEMRRKSV-------ALPDSFSFAFLLKAAANCRAL 122
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL--------------- 129
G QLH + G SH++V T L++MY L + K+FDE+
Sbjct: 123 TNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAAC 182
Query: 130 ----------------PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
P RNL +WN+M+ G K GEL+ AR +F +MP ++ VSW+ ++
Sbjct: 183 FRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIV 242
Query: 174 GYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
G+ N A P+E+++ VL A Q GA +++HG+ EK GF
Sbjct: 243 GFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQ 302
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
I V+N LIDTY+KCG + A +F+++ R++ VSWT++I+G AMHG G+ A+ F
Sbjct: 303 I-ISVNNALIDTYSKCGNLDMARLVFDNML--RRSAVSWTAMIAGMAMHGYGEEAIRLFN 359
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
M++ +KP+ +TF+S+L ACSH GL HYGC+VD+ GRA
Sbjct: 360 EMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRA 419
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G+L+QA +P D +V R LLGACS HGN+ + +V R++ E++ N GD+VL+
Sbjct: 420 GKLQQAYDFVCQMPISPND-IVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLL 478
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A G++ D LRR M + K PG S++
Sbjct: 479 SNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMI 512
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 236/424 (55%), Gaps = 48/424 (11%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N + +S P + +LLY Q+ + SP + ++++FL C +L
Sbjct: 49 LYNKFIQTFSSIGHPHRCWLLYCQM---CSQGCSP-----NQYSFTFLFPACASLFNVYP 100
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G LH+ K GF S ++ TAL++MY LG L+ + +LFDE+P R++ TWN +I G +
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-----------SNGASTEPSEITILA 195
G +E A LF +MP RNV+SWT ++ GY + + N T+P+E++I +
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
VLPA Q GA+ + I Y GF NA+ VSN +++ +A+CG I A ++F++I
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAY---VSNAVLELHARCGNIEEAQQVFDEIG 277
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+R NL SW ++I G A+HG A++ +++M ++P+ VTF+ +L AC+HGG+
Sbjct: 278 SKR-NLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEG 336
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGCLVD+LGRAG L++A + +P D V+ LLGAC
Sbjct: 337 RQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMA-PDSVIWGTLLGAC 395
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
SFHGNVE+GE + ++E N G+YV++ NI A G + RLR++M + K G
Sbjct: 396 SFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAG 455
Query: 412 RSLV 415
S +
Sbjct: 456 YSYI 459
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 50/449 (11%)
Query: 3 SSNNVTTRIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
SS+++ ++++ L T SL H + L+NT++ SL+ P + L+ ++Q +
Sbjct: 52 SSSSLGFSLYAYSLFT-SLTHPPNIFLYNTIIRALSLSPQPSLSIFLFNRIQS------A 104
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
LRP DS+++ F ++ + LS G Q H+ + G SH++V +L+ MY S +
Sbjct: 105 RLRP--DSYSFPFALKAVIRLSATKTGLQFHSQAIRFGLHSHLHVLVSLIRMYSS-SHIS 161
Query: 121 DSSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
D+ KLFD +P RN+ WN M+T K ++ A+ LF+ MP RN++SWT ++ GY +
Sbjct: 162 DARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHI 221
Query: 179 NRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
NR + A + P EIT+LAVL A Q GA+ + I Y + G + ++ +
Sbjct: 222 NRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHR-NVPL 280
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N LID YAK G I AL +FE S++ K +V+WT++I+G A+HG+G A+E F RM++
Sbjct: 281 HNALIDMYAKSGNIKRALLIFE--SMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERD 338
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+KPN +TF++VL+ACSH GL HYGC++D+LGRAG L++
Sbjct: 339 RVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQE 398
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A+++ +P E + + LL A HG+ +GER + ++E+E N G+Y L+ NI A
Sbjct: 399 AQQLLQQMPFE-PNAAIWGSLLAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSNIYA 457
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
+GR+ + +R++M +R K PG S +
Sbjct: 458 SLGRWKASRIVRKMMRDRGVKKIPGGSFI 486
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 236/424 (55%), Gaps = 48/424 (11%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N + +S P + +LLY Q+ + SP + ++++FL C +L
Sbjct: 49 LYNKFIQTFSSIGHPHRCWLLYCQM---CSQGCSP-----NQYSFTFLFPACASLFNVYP 100
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G LH+ K GF S ++ TAL++MY LG L+ + +LFDE+P R++ TWN +I G +
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-----------SNGASTEPSEITILA 195
G +E A LF +MP RNV+SWT ++ GY + + N T+P+E++I +
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
VLPA Q GA+ + I Y GF NA+ VSN +++ +A+CG I A ++F++I
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAY---VSNAVLELHARCGNIEEAQQVFDEIG 277
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+R NL SW ++I G A+HG A++ +++M ++P+ VTF+ +L AC+HGG+
Sbjct: 278 SKR-NLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEG 336
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGCLVD+LGRAG L++A + +P D V+ LLGAC
Sbjct: 337 RQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMA-PDSVIWGTLLGAC 395
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
SFHGNVE+GE + ++E N G+YV++ NI A G + RLR++M + K G
Sbjct: 396 SFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAG 455
Query: 412 RSLV 415
S +
Sbjct: 456 YSYI 459
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 243/436 (55%), Gaps = 56/436 (12%)
Query: 3 SSNNVTTRI-HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
S N TT + H+H L +LFNT+ Y+ D+P +AF L+ Q+ S
Sbjct: 63 SLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQIL------FSG 116
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
L P D +T+ L++ C + G QLH + K+G +VYV L+NMY + +
Sbjct: 117 LFP--DDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDC 174
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ ++FD++ E +VT+N MITG + A SLF E+ RN+
Sbjct: 175 ARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNL---------------- 218
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+P+++T+L+VL + GA+ + +H Y +K GFN F ++V LID YAKCG
Sbjct: 219 -----KPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRF-VKVDTALIDMYAKCGS 272
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A+ +FE+++V ++ +W+++I +A+HG G AV F+ M+K G +P+ +TFL +L
Sbjct: 273 LDDAVCVFENMAV--RDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLL 330
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
ACSH GL HYGC+VD+LGRAGRLE+A + +G+P T
Sbjct: 331 YACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPT 390
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
++ R LL AC HGNVE+G+RV ++ E++ +GGDY+++ N+ A GR+ D +R+
Sbjct: 391 PIL-WRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRK 449
Query: 400 VMDERNALKFPGRSLV 415
+M+ER +K PG S V
Sbjct: 450 LMNERGVVKIPGCSSV 465
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 239/423 (56%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT++ YS + P++A LLY + +Y HS +++T+ FL++ C ++S
Sbjct: 83 TFMWNTMIRGYSNSKEPEEALLLYHHM--LY---HSVPH---NAYTFPFLLKACSSMSAS 134
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
Q+HA I K+GF S +Y +L+N+Y G +K + LFD++ +R+ V+WN MI G
Sbjct: 135 EETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGY 194
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDG----------YTRMNRSNGASTEPSEITIL 194
K GE+E A +F MP RN++SWT ++ G +R A + + ++
Sbjct: 195 TKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALV 254
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ L A G + + IH Y +K D + LID YAKCG + A+++F +
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKKHEIE-IDPILGCVLIDMYAKCGDLEEAIEVFRKM-- 311
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E K + WT++ISG+A+HG G+ A+E F +MQ G++PN++TF +L ACSH GL
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG L++AE++ +P + + + LL AC
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK-PNAAIWGALLNACH 430
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGN+E+G+++ + +++++ G+GG Y+ + +I A G + A R+RR M E+ K PG
Sbjct: 431 IHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGC 490
Query: 413 SLV 415
S++
Sbjct: 491 SVI 493
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 42/246 (17%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + +FD + N WN MI G E E A L+ M +V
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 177 RMNRSNGASTEPSEI--------------TILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
+ S AS E +I T ++L ++G +++ +L+ ++R
Sbjct: 126 KACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQR--- 182
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
D N +ID Y KCG I A ++F + +N++SWTS+ISG G K A+ F
Sbjct: 183 --DTVSWNSMIDGYTKCGEIEMAYEIFNHMP--ERNIISWTSMISGCVGAGKPKEALNLF 238
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGG-------LH-------------YGC-LVDMLGRA 321
RMQ G+K + V +S L AC+ G +H GC L+DM +
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKC 298
Query: 322 GRLEQA 327
G LE+A
Sbjct: 299 GDLEEA 304
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 238/421 (56%), Gaps = 44/421 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+NT + S SP A LY +++ LRP DS++ +++ V LS +
Sbjct: 89 LYNTAIKALSKTSSPINAIWLYTRIRI------DGLRP--DSYSIPSVLKAVVKLSAVEV 140
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+H V V T+L+ MY S GF+ D+ KLFD + +++ WN M+ G VK
Sbjct: 141 GRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVK 200
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
GEL+ AR +F EMP RNV+SWT ++ GY + NR + A EP EI +LAV
Sbjct: 201 VGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAV 260
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A GA+ + IH Y EK G + + N LID YAK G I AL++FE++ ++
Sbjct: 261 LSACADLGALELGEWIHNYIEKHGLCRI-VSLYNALIDMYAKSGNIRRALEVFENM--KQ 317
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K++++W+++I+ A+HG+G A++ F RM+K ++PN VTF+++L+ACSH G+
Sbjct: 318 KSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYY 377
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC++D+L RAG L++A+K+ +P E + ++ LL A + H
Sbjct: 378 FDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFE-ANAMIWGSLLAASNTH 436
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
+ E+ + + + ++E GN G+YVL+ N A +G++ ++ +R++M K PG S+
Sbjct: 437 RDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSV 496
Query: 415 V 415
+
Sbjct: 497 I 497
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 238/424 (56%), Gaps = 43/424 (10%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T L NT++ SL D P + ++++ P D+FT+ F+++ V +S
Sbjct: 77 NTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKP-----DTFTFPFVLKIAVRVSD 131
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G Q+H + GF S V+V T L+ MY S G L D+ K+FDE+ +++ WN ++ G
Sbjct: 132 VWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAG 191
Query: 144 LVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGA----------STEPSEI 191
K GE++ ARSL E MPC RN VSWT ++ GY + R++ A + EP E+
Sbjct: 192 YGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEV 251
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+LAVL A G++ + I Y + RG N + ++N +ID YAK G I AL +FE
Sbjct: 252 TLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMYAKSGNITKALDVFE- 309
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
V +N+V+WT+II+G A HG G A+ F RM K G++PN VTF+++L+ACSH G
Sbjct: 310 -CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVD 368
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC++D+LGRAG+L +A+++ +P + + + LL
Sbjct: 369 LGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK-ANAAIWGSLLA 427
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
A + H ++E+GER +++++E N G+Y+L+ N+ + +GR+ ++ +R +M K
Sbjct: 428 ASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKM 487
Query: 410 PGRS 413
G S
Sbjct: 488 AGES 491
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-------------TEPSEITIL 194
G L YA S+F PC N ++ + ++ N S +P T
Sbjct: 61 GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFP 120
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
VL + V + IHG GF++ + V LI Y CG + A K+F+++ V
Sbjct: 121 FVLKIAVRVSDVWFGRQIHGQVVVFGFDS-SVHVVTGLIQMYFSCGGLGDARKMFDEMLV 179
Query: 255 ER-------------------------------KNLVSWTSIISGFAMHGMGKAAVENFE 283
+ +N VSWT +ISG+A G A+E F+
Sbjct: 180 KDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQ 239
Query: 284 RMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
RM ++P+ VT L+VL+AC+ G L G
Sbjct: 240 RMLMENVEPDEVTLLAVLSACADLGSLELG 269
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 239/422 (56%), Gaps = 39/422 (9%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ L+N ++ Y A +YKQ+ H +P+ P D FT+ F++++C L
Sbjct: 76 NAFLYNAMIRAYKHNKVYVLAITVYKQMLG-NPHGENPIFP--DKFTFPFVVKSCAGLMC 132
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+LG Q+H + K G +S+ V +LV MYV L D+ ++F+E+ ER+ V+WN +I+G
Sbjct: 133 YDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISG 192
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITI 193
V+ G++ AR++FEEM + + SWT I+ GY R+ R EP EI++
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
++VLP Q GA+ + IH Y +K GF +I V N LI+ YAKCG I +LF+ +
Sbjct: 253 VSVLPDCAQLGALELGKWIHIYADKAGF-LRNICVCNALIEMYAKCGSIDQGRRLFDQM- 310
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+ ++++SW+++I G A HG + A+E F+ MQK ++P+ +TF+ +L AC+H GL
Sbjct: 311 -KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG 369
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGCLV++LG +GRL+QA ++ +P + D + LL +C
Sbjct: 370 LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRK-PDSPIWGSLLSSC 428
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HGN+++ +LE+E + G+YVL+ N+ A +G++ R+R++M ++ K PG
Sbjct: 429 RSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPG 488
Query: 412 RS 413
S
Sbjct: 489 CS 490
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 239/423 (56%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT++ YS + P++A LLY + +Y HS +++T+ FL++ C ++S
Sbjct: 83 TFMWNTMIRGYSNSKEPEEALLLYHHM--LY---HSVPH---NAYTFPFLLKACSSMSAL 134
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
Q+HA I K+GF S +Y +L+N+Y G +K + LFD++ +R+ V+WN MI G
Sbjct: 135 EETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGY 194
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDG----------YTRMNRSNGASTEPSEITIL 194
K GE+E A +F MP RN++SWT ++ G +R A + + ++
Sbjct: 195 TKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALV 254
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ L A G + + IH Y +K D + LID YAKCG + A+++F +
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKKHEIE-IDPILGCVLIDMYAKCGDLEEAIEVFRKM-- 311
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E K + WT++ISG+A+HG G+ A+E F +MQ G++PN++TF +L ACSH GL
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG L++AE++ +P + + + LL AC
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK-PNAAIWGALLNACH 430
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGN+E+G+++ + +++++ G+GG Y+ + +I A G + A R+RR M E+ K PG
Sbjct: 431 IHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGC 490
Query: 413 SLV 415
S++
Sbjct: 491 SVI 493
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 42/246 (17%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + +FD + N WN MI G E E A L+ M +V
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 177 RMNRSNGASTEPSEI--------------TILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
+ S A E +I T ++L ++G +++ +L+ ++R
Sbjct: 126 KACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQR--- 182
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
D N +ID Y KCG I A ++F + +N++SWTS+ISG G K A+ F
Sbjct: 183 --DTVSWNSMIDGYTKCGEIEMAYEIFNHMP--ERNIISWTSMISGCVGAGKPKEALNLF 238
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGG-------LH-------------YGC-LVDMLGRA 321
RMQ G+K + V +S L AC+ G +H GC L+DM +
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKC 298
Query: 322 GRLEQA 327
G LE+A
Sbjct: 299 GDLEEA 304
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 145/421 (34%), Positives = 233/421 (55%), Gaps = 44/421 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
++NT+ Y + +Y ++ H + P + FTY LIR C
Sbjct: 87 IYNTIFRGYLRWQLARNCIFMYSRML------HKSVSP--NKFTYPPLIRACCIDYAIEE 138
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+HA + K GF + + L++MYV+ L+ + ++FD +P+R++V+W +ITG +
Sbjct: 139 GKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQ 198
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
WG ++ AR +FE MP RN VSW ++ Y + NR + A + + ++
Sbjct: 199 WGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASM 258
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A GA+ + IHGY EK G D +++ +ID Y KCGC+ A ++F ++ +
Sbjct: 259 LSACTGLGALEQGKWIHGYIEKSGIE-LDSKLATTVIDMYCKCGCLEKASEVFNELP--Q 315
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K + SW +I G AMHG G+AA+E F+ M++ + P+ +TF++VL+AC+H GL
Sbjct: 316 KGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHY 375
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
H+GC+VD+LGRAG LE+A K+ +P D V L+GAC H
Sbjct: 376 FQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN-PDAGVLGALVGACRIH 434
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
GN E+GE++ +KV+E+E N G YVL+ N+ A GR+ D ++R++M++R K PG S+
Sbjct: 435 GNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSM 494
Query: 415 V 415
+
Sbjct: 495 I 495
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 33/237 (13%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEP 188
+ + K G+L YA +F+++P + + I GY R +R S P
Sbjct: 59 IKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSP 118
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
++ T ++ A + A+ + IH + K GF A ++N LI Y + A ++
Sbjct: 119 NKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNN-LIHMYVNFQSLEQARRV 177
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F+++ ++++VSWTS+I+G++ G A E FE M P R N+ S
Sbjct: 178 FDNMP--QRDVVSWTSLITGYSQWGFVDKAREVFELM------PER-------NSVS--- 219
Query: 309 LHYGCLVDMLGRAGRLEQAEKI--ALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
+ ++ ++ RL +A + + + + + D V +L AC+ G +E G+ +
Sbjct: 220 --WNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWI 274
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 239/427 (55%), Gaps = 49/427 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVT 80
+ L+N+++ Y+ +YKQL LR F D FT+ F+ ++C +
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQL----------LRKSFELPDRFTFPFMFKSCAS 121
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L LG Q+H + K G + HV AL++MY+ L D+ K+FDE+ ER++++WN +
Sbjct: 122 LGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSL 181
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSE 190
++G + G+++ A+ LF M + +VSWT ++ GYT + A EP E
Sbjct: 182 LSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDE 241
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
I++++VLP+ Q G++ + IH Y E+RGF V N LI+ Y+KCG I A++LF
Sbjct: 242 ISLISVLPSCAQLGSLELGKWIHLYAERRGFLK-QTGVCNALIEMYSKCGVISQAIQLFG 300
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+E K+++SW+++ISG+A HG A+E F MQ+ +KPN +TFL +L+ACSH G+
Sbjct: 301 --QMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMW 358
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGCL+D+L RAG+LE+A +I +P + D + LL
Sbjct: 359 QEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK-PDSKIWGSLL 417
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
+C GN+++ ++E+E + G+YVL+ NI A +G++ D RLR+++ N K
Sbjct: 418 SSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK 477
Query: 409 FPGRSLV 415
PG SL+
Sbjct: 478 TPGGSLI 484
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 77/334 (23%)
Query: 140 MITGLV----KWGELEYARSLFEEMPCRNVVSWTGILDGYT---------RMNRS--NGA 184
M+T +V K +++YA LF ++ NV + I+ YT R+ + +
Sbjct: 44 MVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKS 103
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P T + + G+ + +HG+ K G F + N LID Y K +
Sbjct: 104 FELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVD 162
Query: 245 ALKLFEDISVER------------------------------KNLVSWTSIISGFAMHGM 274
A K+F+++ ER K +VSWT++ISG+ G
Sbjct: 163 AHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGC 221
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------C 313
A++ F MQ G++P+ ++ +SVL +C+ G L G
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNA 281
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
L++M + G + QA I L E DV+ ++ ++HGN EM+R
Sbjct: 282 LIEMYSKCGVISQA--IQLFGQMEGKDVISWSTMISGYAYHGN---AHGAIETFNEMQRA 336
Query: 374 ----NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
NG ++ + + + VG + + R +M +
Sbjct: 337 KVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/447 (34%), Positives = 245/447 (54%), Gaps = 55/447 (12%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLF-----------NTLLHFYSLADSPKKAFLLYK 49
SP S+ +R+ S +S + L+F NT L ++ DSP A L+
Sbjct: 43 SPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFY 102
Query: 50 QLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109
+L++ SP D +T SF+++ C L G +H + K+G QS++++ +
Sbjct: 103 RLREFDI---SP-----DHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMI 154
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
V++Y G + + K+FD++P+R+++TWN+MI LVK G+ E A LF EMP RNV SWT
Sbjct: 155 VHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWT 214
Query: 170 GILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
++ GY + +S A P+E+T++AVL A G + + IH + +
Sbjct: 215 SMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS 274
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
G+ +IRV N LID Y KCGC+ A ++F+++ E + +VSW+++I+G A HG + A+
Sbjct: 275 GYEK-NIRVCNTLIDMYVKCGCLEDACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDAL 331
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDM 317
F +M G+KPN VTF+ +L+ACSH G+ HYGC+VD+
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
RAG L++A + + +P + VV LLG C H NV++ E TR + +++ N G
Sbjct: 392 FSRAGLLQEAHEFIMNMPIA-PNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGY 450
Query: 378 YVLMYNILAGVGRYVDAERLRRVMDER 404
YV++ NI A GR+ D R+R++M +R
Sbjct: 451 YVVLSNIYAEAGRWEDVARVRKLMRDR 477
>gi|357514477|ref|XP_003627527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521549|gb|AET02003.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 241/479 (50%), Gaps = 100/479 (20%)
Query: 21 LLHH-----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
LLHH T L+N L+ S S + F LY Q+ Y H HSP + +T++FL
Sbjct: 38 LLHHSQKPTTFLYNKLIQACS---SKHQCFTLYSQM---YLHGHSP-----NQYTFNFLF 86
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
TC +LS +LG +H K GF+ V+ +TAL++MY LG LK + +FDE+ + L
Sbjct: 87 TTCTSLSSLSLGQMIHTQFMKSGFKHDVFASTALLDMYAKLGCLKFARNVFDEMSVKELA 146
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY-------------TRMNRSN 182
TWN M+ G ++G++E A LF MP RNVVSWT ++ GY RM R
Sbjct: 147 TWNAMMAGCTRFGDMERALELFWLMPSRNVVSWTTMVSGYLQNKQYEKALGLFMRMEREK 206
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
S P+E+T+ +VLPA GA+ Q + Y K GF ++ V N +++ YAKCG I
Sbjct: 207 DVS--PNEVTLASVLPACANLGALEIGQRVEVYARKNGFFK-NLFVCNAVLEMYAKCGKI 263
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM----------------- 285
A K+F++I R NL SW S+I G A+HG A++ +++M
Sbjct: 264 DVAWKVFDEIGRFR-NLCSWNSMIMGLAVHGQCHKAIQLYDQMLVSYSLYLLFISFAFIM 322
Query: 286 ---------------------------QKVGLKPNRVTFLSVLNACSHGGL--------- 309
+ G P+ VTF+ +L AC+HGG+
Sbjct: 323 IRGGHGLVNHINRTEPNLSVEMVRNNRTREGTLPDDVTFVGLLLACTHGGMVEKGKHVFQ 382
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+LGRAGRL +A ++ +P + D V+ LLGACSFHGN
Sbjct: 383 SMTRDFNIIPKLEHYGCMVDLLGRAGRLTEAYEVIKRMPMK-PDSVIWGTLLGACSFHGN 441
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VE+ E + +E N G+YV++ NI A G++ +LR+VM K G+S +
Sbjct: 442 VELAEVAAESLFVLEPWNPGNYVILSNIYASAGKWDGVAKLRKVMKGSKITKTAGQSFI 500
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 234/422 (55%), Gaps = 43/422 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+ NTL+ Y+ + +P A + Y ++ + S + P D T+ L++ C +
Sbjct: 101 FIANTLIRAYAFSPNPIDAVVFYSEMTE-----SSVVFP--DVHTFPLLLKACSEIPSLR 153
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +H+ + K+G+ S V V+ LV MY S G ++ + +FD PE + +WN+MI G +
Sbjct: 154 LGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL 213
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILA 195
K G + AR +FE MP R+VVSW+ +++GY + +R G EP+E ++
Sbjct: 214 KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVN 273
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L A GA+ Q I Y E++ +R+ LID Y+KCG + AL++F + +
Sbjct: 274 ALSACAHLGAMEQGQWIERYMERKNVR-LTVRLGTALIDMYSKCGSVERALEVFHKM--K 330
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
KN+++W+++I+G A++G GK A+ F +M+ G+KPN VTF+ +LNACSH L
Sbjct: 331 EKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCS 390
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
H+ C+VD+ GRAG L+QA+ + +P + + + LL AC
Sbjct: 391 FFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFK-PNSAIWGALLNACRI 449
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG+ E+GE+V +++LE++ +GG YVL+ NI A GR+ LRR+M ER K PG S
Sbjct: 450 HGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCS 509
Query: 414 LV 415
+
Sbjct: 510 FI 511
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/477 (33%), Positives = 244/477 (51%), Gaps = 75/477 (15%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P++ T ++H L T ++N ++ S + +P +A LY ++ + +
Sbjct: 51 PTATPTVTN-YAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKG--- 106
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV-NTALV--------NM 112
DS+T+ F+++ C L + N G+ +H ++ ++GF S+ V NT LV N+
Sbjct: 107 -----DSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNV 161
Query: 113 YVSL----------------------GFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
SL G LK + KLF+E+PER+LV+WNVMITG VK GE+
Sbjct: 162 ATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEM 221
Query: 151 EYARSLFEEMPCRNVVSWTGILDGYT----------RMNRSNGASTEPSEITILAVLPAI 200
E AR LF+E P ++VVSW ++ GY N A P E+T+L++L A
Sbjct: 222 ESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSAC 281
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
G + N + +H + + N LID YAKCG I +L +F S+ K+++
Sbjct: 282 ADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVF--WSITDKDVI 339
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG------------ 308
SW S+I G A+HG GK ++ F+ MQ+ + PN +TF+ VL ACSH G
Sbjct: 340 SWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLM 399
Query: 309 ----------LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
H GC+VDMLGRAG L++A K + E + ++ R LL AC HG+VE
Sbjct: 400 SSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIE-PNAIIWRTLLAACKVHGDVE 458
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + K+ M + + GDYVLM N+ A G + AE++R++MD+ K G S V
Sbjct: 459 LAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFV 515
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 151/353 (42%), Gaps = 88/353 (24%)
Query: 82 SYPNLGT--QLHAVISKVGFQSHV--------YVNTALVNMYVSLGFLKDSSKLFDELPE 131
+ PNL T Q+HA++ GF ++V ++T+LV + + +LF ++P+
Sbjct: 11 TLPNLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQ 70
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV-----SWTGILDGYTRMNRSNGAST 186
+ +NVMI G + A SL+ EM R+ V ++ +L TR+ N S
Sbjct: 71 PDTFMYNVMIRGSSQSPNPLRAISLYTEMH-RHFVKGDSYTFPFVLKACTRLFWVNTGSA 129
Query: 187 EPSEITILAVLPAIWQNGAVRN----------------------CQ--------LIHGYG 216
+ L N VRN C+ LI GY
Sbjct: 130 VHGMVLRL----GFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYA 185
Query: 217 EKRG--------FNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+RG FN D+ N +I Y K G + SA LF++ V K++VSW ++
Sbjct: 186 -RRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPV--KDVVSWNAM 242
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------------ 312
I+G+ + G+ K A+E F M + G+ P+ VT LS+L+AC+ G L G
Sbjct: 243 IAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISM 302
Query: 313 ---------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G ++++ + I + DV+ ++ + HG+
Sbjct: 303 GKLSTLLGNALIDMYAKCGNIKESLDVFWSITDK--DVISWNSVIVGMALHGH 353
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 243/471 (51%), Gaps = 76/471 (16%)
Query: 9 TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS 68
T ++H L + T ++NT++ + + SP A LY Q++ + +RP D
Sbjct: 62 TMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQME------NGCVRP--DK 113
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN---------------------- 106
FT+ F+++ C L + +G +H + ++GF+S+ +V
Sbjct: 114 FTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDG 173
Query: 107 ---------TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
+AL Y G L + +LFDE+P ++LV+WNVMITG K GE+E AR LF
Sbjct: 174 SAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLF 233
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTE-----------PSEITILAVLPAIWQNGAV 206
+E+P R+VV+W ++ GY + SN + E P E+T+L++L A G +
Sbjct: 234 DEVPKRDVVTWNAMIAGYV-LCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDL 292
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
Q IH + GF + + N LID YAKCG I AL++F+ + K++ +W S++
Sbjct: 293 DAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQ--GMREKDVSTWNSVL 350
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
G A HG + ++ F M+K+ ++P+ +TF+ VL ACSH G
Sbjct: 351 GGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNI 410
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+VD+LGRAG L +A + E + +V R LLGAC HGNVE+G R
Sbjct: 411 EPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIE-PNAIVWRTLLGACRIHGNVELGRRAN 469
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++L+M GDYVL+ NI A G + E++R++MD+ K G SL+
Sbjct: 470 MQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLI 520
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 79/355 (22%)
Query: 72 SFLIRTCVTLSYPNLGT--QLHAVISKVGFQSHVYVNTALV---NMYVSLGFLKDSSKLF 126
S L R+C T+ GT Q+HA + GF S+ L+ ++ +S G + + +LF
Sbjct: 17 SQLWRSCTTI-----GTLKQIHASMIVKGFNSNTSALRELIYASSIAIS-GTMAYAHQLF 70
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----------------VSWTG 170
+ E + WN MI G + A SL+ +M V + W
Sbjct: 71 PHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVK 130
Query: 171 ILDG-YTRMNRSNGASTEPSEITI---------LAVLPAIWQNGAVRNC----QLIHGYG 216
+ G + R+ R S T+ LAV A++ A R+ L GY
Sbjct: 131 MGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYA 190
Query: 217 EKRG--------FNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+RG F+ D+ N +I YAK G + SA KLF++ V ++++V+W ++
Sbjct: 191 -RRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDE--VPKRDVVTWNAM 247
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------------ 312
I+G+ + G + A+E FE M+ VG P+ VT LS+L+AC+ G L G
Sbjct: 248 IAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGF 307
Query: 313 ---------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
L+DM + G + +A ++ G+ + DV +LG +FHG+ E
Sbjct: 308 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREK--DVSTWNSVLGGLAFHGHAE 360
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 242/456 (53%), Gaps = 79/456 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVTLS 82
+FNTL+ YS +D P + ++ ++ +R F DSF+++F+++
Sbjct: 238 FMFNTLVRGYSESDEPHNSVAVFVEM----------MRKGFIFPDSFSFAFVVKAAANFR 287
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV------- 135
G Q+H K G SH++V T L+ MY G + + K+FDE+P+ NLV
Sbjct: 288 SLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVT 347
Query: 136 ------------------------TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
+WNVM+ G +K GELE A+ +F EMP R+ VSW+ +
Sbjct: 348 ACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTM 407
Query: 172 LDGYTRMNRSNG----------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+ G++ N A P+E+++ VL A Q+GA + +HG+ EK G+
Sbjct: 408 IVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGY 467
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
++ + V+N LID Y++CG + A +FE + E++++VSWTS+I+G AMHG G+ A+
Sbjct: 468 -SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRSIVSWTSMIAGLAMHGHGEEAIRI 525
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
F M + G+ P+ ++F+S+L ACSH GL HYGC+VD+ G
Sbjct: 526 FNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYG 585
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
R+G+L++A +P T +V R LLGACS HGN+E+ E+V +++ E++ N GD V
Sbjct: 586 RSGKLQKAYSFICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLV 644
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L+ N+ A G++ D +R+ M + K SLV
Sbjct: 645 LLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLV 680
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 243/471 (51%), Gaps = 76/471 (16%)
Query: 9 TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS 68
T ++H L + T ++NT++ + + SP A LY Q++ + +RP D
Sbjct: 27 TMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQME------NGCVRP--DK 78
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN---------------------- 106
FT+ F+++ C L + +G +H + ++GF+S+ +V
Sbjct: 79 FTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDG 138
Query: 107 ---------TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
+AL Y G L + +LFDE+P ++LV+WNVMITG K GE+E AR LF
Sbjct: 139 SAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLF 198
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTE-----------PSEITILAVLPAIWQNGAV 206
+E+P R+VV+W ++ GY + SN + E P E+T+L++L A G +
Sbjct: 199 DEVPKRDVVTWNAMIAGYV-LCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDL 257
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
Q IH + GF + + N LID YAKCG I AL++F+ + K++ +W S++
Sbjct: 258 DAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQ--GMREKDVSTWNSVL 315
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
G A HG + ++ F M+K+ ++P+ +TF+ VL ACSH G
Sbjct: 316 GGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNI 375
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+VD+LGRAG L +A + E + +V R LLGAC HGNVE+G R
Sbjct: 376 EPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIE-PNAIVWRTLLGACRIHGNVELGRRAN 434
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++L+M GDYVL+ NI A G + E++R++MD+ K G SL+
Sbjct: 435 MQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLI 485
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 68/305 (22%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----------- 165
G + + +LF + E + WN MI G + A SL+ +M V
Sbjct: 26 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85
Query: 166 -----VSWTGILDG-YTRMNRSNGASTEPSEITI---------LAVLPAIWQNGAVRNC- 209
+ W + G + R+ R S T+ LAV A++ A R+
Sbjct: 86 KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145
Query: 210 ---QLIHGYGEKRG--------FNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L GY +RG F+ D+ N +I YAK G + SA KLF++ V
Sbjct: 146 AWSALTAGYA-RRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDE--VP 202
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
++++V+W ++I+G+ + G + A+E FE M+ VG P+ VT LS+L+AC+ G L G
Sbjct: 203 KRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQR 262
Query: 313 -------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
L+DM + G + +A ++ G+ + DV +LG +F
Sbjct: 263 IHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREK--DVSTWNSVLGGLAF 320
Query: 354 HGNVE 358
HG+ E
Sbjct: 321 HGHAE 325
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 211/361 (58%), Gaps = 37/361 (10%)
Query: 86 LGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG QLH+++ + G S +V+ +LV +Y + + D+ +F E+ R++V WNVMI G
Sbjct: 96 LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGY 155
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
VK G+L +AR LF+ MP RNVVSWT ++ GY +M R A EP + +L
Sbjct: 156 VKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALL 215
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+VL A GAV + +H + +RG +I + N +ID Y KCGCI A+++FE +
Sbjct: 216 SVLSACGDLGAVDLGEWVHRFVVRRGLRQ-EIPLMNSIIDMYMKCGCIEKAVEVFE--GM 272
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E K++V+WT++I+GFA+HG+G AVE F RM++ + PN VTFL++L+ACSH GL
Sbjct: 273 EEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGR 332
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG L++A+ + +P + + + LL A
Sbjct: 333 WYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLK-ANAAIWGALLAASR 391
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HG+ ++GE ++E+E N G+Y+L+ NI A R+ D +LR+ M ER PG
Sbjct: 392 THGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGA 451
Query: 413 S 413
S
Sbjct: 452 S 452
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 109/257 (42%), Gaps = 52/257 (20%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ Y+ P++A +++++Q + P D ++ C L +LG
Sbjct: 179 WTTVIGGYAQMRRPEEAVEVFRRMQV------EGIEP--DGVALLSVLSACGDLGAVDLG 230
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + + G + + + ++++MY+ G ++ + ++F+ + E+++VTW +I G
Sbjct: 231 EWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALH 290
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +F RM R N A P+++T LA+L A G
Sbjct: 291 GLGLQAVEMFR------------------RMERENMA---PNDVTFLAILSACSHVGLT- 328
Query: 208 NCQLIHGYGEKRGFNAFDIRVSN-----------CLIDTYAKCGCIFSALKLFEDISVER 256
G F+I VS C++D + GC+ A L +D+ + +
Sbjct: 329 ----------DLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPL-K 377
Query: 257 KNLVSWTSIISGFAMHG 273
N W ++++ HG
Sbjct: 378 ANAAIWGALLAASRTHG 394
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 240/430 (55%), Gaps = 50/430 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI----RTCV 79
+T +NT++ Y+ + SP L+ Q++Q + D FT++FLI R
Sbjct: 80 NTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDP--------DEFTFNFLIKARSRVHK 131
Query: 80 TLSYPNL--GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
++P+ ++H + K GF SH++V AL+N+Y G + ++F+E ++V+W
Sbjct: 132 VHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSW 191
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS----------NGASTE 187
+ ++ V+ GELE AR +F++MP ++VVSWT ++ GY++ N S + A
Sbjct: 192 SGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIR 251
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P E+TI++V+ A G V +H Y + GF + + + N LI+ YAKCGC+ A +
Sbjct: 252 PDEVTIVSVISACTNLGDVETGMNVHSYINENGF-GWMVSLCNALINMYAKCGCVDRAWR 310
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+F ++ +RK+L++W S+IS A HG + A E F M G+ P+ +TFL++L A +H
Sbjct: 311 VFNNM--KRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHK 368
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+VDMLGRAGRLE+A ++ + +P D +V
Sbjct: 369 GLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSND-IVWG 427
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL AC +G+V MGERV +K+LE++ GG Y+L+ +I GR +A +R+ M E
Sbjct: 428 ALLAACRIYGDVNMGERVVKKLLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESG 487
Query: 406 ALKFPGRSLV 415
A+K PG S V
Sbjct: 488 AMKNPGYSWV 497
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 80/298 (26%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + +LFD++P+ N +N +I G K Y +LF +M
Sbjct: 64 GDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQM---------------- 107
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRN------CQLIHGYGEKRGFNAFDIRVSN 230
R N +P E T ++ A + V N C IHG K GF + + V N
Sbjct: 108 RQNH-----VDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCS-HLFVQN 161
Query: 231 CLIDTYAKCGCIFSALKLF-EDISVE----------------------------RKNLVS 261
LI+ YA G +A ++F E + V+ K++VS
Sbjct: 162 ALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVS 221
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------- 312
WT+++SG++ + A+E F M G++P+ VT +SV++AC++ G + G
Sbjct: 222 WTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYIN 281
Query: 313 ------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
L++M + G +++A ++ + + ++ ++ AC+ HG E
Sbjct: 282 ENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRK--SLITWNSMISACANHGYAE 337
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 233/424 (54%), Gaps = 45/424 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ ++NT++ Y+ + +P+ A ++ Q+ H+ + P D +T++F +++C + S
Sbjct: 73 SYMWNTIIRAYANSPTPEAALTIFHQML------HASVLP--DKYTFTFALKSCGSFSGV 124
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H + K G +++ L+++Y S G ++D+ L D + ER++V+WN +++
Sbjct: 125 EEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAY 184
Query: 145 VKWGELEYA-RSLFEEMPCRNVVSWTGILDGYTRMNR----------SNGASTEPSEITI 193
+ G +E A R +F E P +NVVSW ++ GY+ R A +P T+
Sbjct: 185 AERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTL 244
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
++VL A GA+ + +H Y +K G + D V+ L+D Y+KCG I AL++F S
Sbjct: 245 VSVLSACAHVGALSQGEWVHAYIDKNGI-SIDGFVATALVDMYSKCGSIEKALEVFN--S 301
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
RK++ +W SIISG + HG G+ A++ F M G KPN VTF+ VL+ACS GL
Sbjct: 302 CLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEG 361
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VD+LGR G LE+AE++ +P + VV LLGAC
Sbjct: 362 REMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWES-LLGAC 420
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HGNVE+ ERV +K+LE+ +V + N+ A +GR+ D +R+ M + K PG
Sbjct: 421 RNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPG 480
Query: 412 RSLV 415
S++
Sbjct: 481 CSMI 484
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 229/422 (54%), Gaps = 37/422 (8%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L N ++ Y+ + A +Y ++ + H + + D FTY FL++ C L+ L
Sbjct: 75 LHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRL 134
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+HA +++ G +SH V +L+ MY G L + K FD + E+++V+WN +I+ +
Sbjct: 135 GRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHAR 194
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAV 196
G++ AR LF MP + VVSWT ++ GYT + GA EP +++I+AV
Sbjct: 195 MGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAV 254
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
LPA Q GA+ + I+ Y K G + + N L++ YAKCGCI AL+LF +S
Sbjct: 255 LPACAQLGALELGRWIYAYCSKHGMLG-KVYICNALMEMYAKCGCIEEALQLFHGMS--E 311
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGL------ 309
K+++SW++ I G A HG + AV FE M + G + PN +TF+ +L+ACSH GL
Sbjct: 312 KDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLR 371
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR+GR+++A G+P D + LL AC
Sbjct: 372 YLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVP-PDGKIWGSLLSACRS 430
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG+VE +++E+E G+ G+ V++ N+ GR+ + R+ + R+ K PG S
Sbjct: 431 HGDVETAVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCS 490
Query: 414 LV 415
++
Sbjct: 491 MI 492
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 141/344 (40%), Gaps = 79/344 (22%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+RTC T + +L + H + ++ YV T +V++ + G ++++F ++P NL
Sbjct: 17 LRTCAT--FRDL-LRAHGLAVRLCLSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNL 73
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-----SNGASTEPS 189
N MI YA++ R+ V + Y RM R S +
Sbjct: 74 HLHNAMIKA--------YAQNHLH----RDAV------EVYVRMLRCLPHPSTAGFSVGD 115
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
T +L A A R + +H + + G + + V N LI+ Y +CG + +A K F
Sbjct: 116 RFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAV-VQNSLIEMYTRCGDLSTARKAF 174
Query: 250 EDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ + S+ K +VSWT+++SG+ G AVE
Sbjct: 175 DGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVE 234
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLG 319
F MQ G +P+ V+ ++VL AC+ G L G L++M
Sbjct: 235 VFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYA 294
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
+ G +E+A ++ G+ + DV+ +G + HG R+
Sbjct: 295 KCGCIEEALQLFHGMSEK--DVISWSTAIGGLAAHGRAREAVRL 336
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 214/381 (56%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT S +++ C +++ G Q H I K+GF+S V V TALV+MY G L+D+ +F
Sbjct: 9 NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
D++ ER+ TWN MITG + +++ A LF EM R+VVSWT ++ GY +
Sbjct: 69 DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
N+ + + +VL A A+ + H Y + GF A DI V + L+D Y
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGF-ALDIVVGSALVDMY 187
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AK G + A ++F+ + ++N VSW SII+G A HG G AV FE+M + G+KPN ++
Sbjct: 188 AKSGSMEDACQVFDKMP--QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL+ACSH GL HY C++D+LGRAG L++AE G+
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E DV V LLGAC HGN E+ +R+ +L ME G YVL+ NI A G++ DA
Sbjct: 306 PVE-PDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDA 364
Query: 395 ERLRRVMDERNALKFPGRSLV 415
++R++M +R +K PG S +
Sbjct: 365 AKVRKLMKDRGVMKQPGYSWI 385
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 53/223 (23%)
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
G +P++ T+ V+ A ++ + H Y K GF + D+ V L+ YA+CG +
Sbjct: 3 GKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFES-DVVVQTALVHMYARCGSL 61
Query: 243 FSALKLFEDIS-----------------------------VERKNLVSWTSIISGFAMHG 273
A +F+ +S + +++VSWT++I+G+A +G
Sbjct: 62 EDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNG 121
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------------------- 312
G ++ F +M+K G+K +R SVL+AC+ L G
Sbjct: 122 YGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGS 181
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
LVDM ++G +E A ++ +P +V I+ G C+ HG
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMPQR-NEVSWNSIITG-CAQHG 222
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 150/454 (33%), Positives = 235/454 (51%), Gaps = 75/454 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ ++NT++ Y+ + +P+ A ++ Q+ H+ + P D +T++F +++C + S
Sbjct: 73 SYMWNTIIRAYANSPTPEAALTIFHQML------HASVLP--DKYTFTFALKSCGSFSGV 124
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS---------------------- 122
G Q+H + K G +++ L+++Y S G ++D+
Sbjct: 125 EEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAY 184
Query: 123 ---------SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
LFDE+ ERN+ +WN MI+G V G LE AR +F E P +NVVSW ++
Sbjct: 185 AERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMIT 244
Query: 174 GYTRMNR----------SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
GY+ R A +P T+++VL A GA+ + +H Y +K G +
Sbjct: 245 GYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGI-S 303
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D V+ L+D Y+KCG I AL++F S RK++ +W SIISG + HG G+ A++ F
Sbjct: 304 IDGFVATALVDMYSKCGSIEKALEVFN--SCLRKDISTWNSIISGLSTHGSGQHALQIFS 361
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
M G KPN VTF+ VL+ACS GL HYGC+VD+LGR
Sbjct: 362 EMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRV 421
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G LE+AE++ +P + VV LLGAC HGNVE+ ERV +K+LE+ +V +
Sbjct: 422 GLLEEAEELVQKMPQKEASVVWES-LLGACRNHGNVELAERVAQKLLELSPQESSSFVQL 480
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ A +GR+ D +R+ M + K PG S++
Sbjct: 481 SNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMI 514
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 239/423 (56%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N ++ +S +D P+++ LLY+++ S +P +++T+ L++ C LS
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRM----LCSSAP----HNAYTFPSLLKACSNLSAF 131
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
TQ+HA I+K+G+++ VY +L+N Y G K + LFD +PE + V+WN +I G
Sbjct: 132 EETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGY 191
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--MNRS--------NGASTEPSEITIL 194
VK G+++ A +LF +M +N +SWT ++ GY + MN+ + EP +++
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLA 251
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A Q GA+ + IH Y K D + LID YAKCG + AL++F++I
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIR-MDSVLGCVLIDMYAKCGEMEEALEVFKNI-- 308
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++K++ +WT++ISG+A HG G+ A+ F MQK+G+KPN +TF +VL ACS+ GL
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG L++A++ +P + + V+ LL AC
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK-PNAVIWGALLKACR 427
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H N+E+GE + ++ ++ +GG YV NI A ++ A RR+M E+ K PG
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487
Query: 413 SLV 415
S +
Sbjct: 488 STI 490
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 52/323 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSL---GFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+HA + K G Y T ++ +S FL + +FD + WN+MI G
Sbjct: 32 QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91
Query: 146 KWGELEYARSLFEEMPC----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
E E + L++ M C N ++ +L + ++ + ++IT L +
Sbjct: 92 CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLG-----Y 146
Query: 202 QNGAVRNCQLIHGYGEKRGFN----AFDIRVS-------NCLIDTYAKCGCIFSALKLFE 250
+N LI+ Y F FD R+ N +I Y K G + AL LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFD-RIPEPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-- 308
++ KN +SWT++ISG+ M K A++ F MQ ++P+ V+ + L+AC+ G
Sbjct: 206 KMA--EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGAL 263
Query: 309 -----LH-------------YGC-LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
+H GC L+DM + G +E+A ++ I + V L+
Sbjct: 264 EQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKK--SVQAWTALIS 321
Query: 350 ACSFHGNVEMGERVTRKVLEMER 372
++HG+ G K +EM++
Sbjct: 322 GYAYHGH---GREAISKFMEMQK 341
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 233/429 (54%), Gaps = 51/429 (11%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL-FDSFTYSFLIRTCVTLSY 83
T+++N ++ YS S +++ L+ Q+ H RP D +T++F+ C +
Sbjct: 119 TIIWNLMIQAYSKTPSSQESLYLF---HQMLAHG----RPTSADKYTFTFVFTACS--RH 169
Query: 84 PNL---GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
P L G +H ++ K G++S ++V +LVNMY + D+ ++FDE+P+R+++TW +
Sbjct: 170 PTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSV 229
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPS 189
+ G GEL AR LF+ MP RN VSW ++ GY N A +P+
Sbjct: 230 VKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPN 289
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
E ++++L A GA+ + IH Y +K +S LID YAKCG I A ++F
Sbjct: 290 EAVLVSILSACAHLGALDQGKWIHVYIDKNRI-LLSSNISTALIDMYAKCGRIDCARRVF 348
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ + +++L++WTS+ISG +MHG+G + F M G KP+ +T L VLN CSH GL
Sbjct: 349 D--GLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGL 406
Query: 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
HYGCL+D+LGRAGRLE A + +P E DVV R L
Sbjct: 407 VEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPME-PDVVAWRAL 465
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGN-GGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
L AC HG+V++GER+ + E+ G+ GG YVL+ N+ A +G++ ++R+ M +R +
Sbjct: 466 LSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGS 525
Query: 407 LKFPGRSLV 415
PG S +
Sbjct: 526 EGCPGCSWI 534
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 79/322 (24%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGLVKW 147
Q+HA + G + + L++ Y+ L + +FD+ P + WN+MI K
Sbjct: 73 QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKT 132
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ + LF +M ++G T + T V A ++ +R
Sbjct: 133 PSSQESLYLFHQM-------------------LAHGRPTSADKYTFTFVFTACSRHPTLR 173
Query: 208 NC-QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +HG K G+ + DI V N L++ Y+ + A ++F+++ ++++++WTS++
Sbjct: 174 GYGENVHGMVVKDGYES-DIFVGNSLVNMYSIFSRMVDAKRVFDEMP--QRDVITWTSVV 230
Query: 267 SGFAMHGMGKAAVENFERMQK-------------VG-------------------LKPNR 294
G+AM G A E F+ M VG +KPN
Sbjct: 231 KGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNE 290
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+S+L+AC+H G L G L+DM + GR++ A ++ G
Sbjct: 291 AVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDG 350
Query: 334 IPSEITDVVVRRILLGACSFHG 355
+ D++ ++ S HG
Sbjct: 351 LHKR--DLLTWTSMISGLSMHG 370
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 235/424 (55%), Gaps = 43/424 (10%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ L+N+++ Y+ LY + +IY D FT+ F+ ++C +L
Sbjct: 72 NVFLYNSIIRAYTHNS-------LYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGS 124
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
LG Q+H + K G + HV AL++MY+ L D+ K+FDE+ ER++++WN +++G
Sbjct: 125 CYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSG 184
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITI 193
+ G+++ A+ LF M + +VSWT ++ GYT + A EP EI++
Sbjct: 185 YARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISL 244
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
++VLP+ G++ + IH Y E+RG V N LI+ Y+KCG + A++LFE
Sbjct: 245 ISVLPSCAHLGSLELGKWIHMYAERRGLLK-QTGVCNALIEMYSKCGMLSQAIQLFE--Q 301
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+ K+++SW+++ISG+A HG A E F MQ+ +KPN +TFL +L+ACSH GL
Sbjct: 302 TKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQG 361
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGCL+D+L RAG+LE+A +I +P + D + LL +C
Sbjct: 362 LKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVK-PDSKIWGSLLSSC 420
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
GN+++ ++E+E + G+YVL+ NI A +G++ D RLR+++ + N K PG
Sbjct: 421 RTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPG 480
Query: 412 RSLV 415
SL+
Sbjct: 481 CSLI 484
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 125/301 (41%), Gaps = 73/301 (24%)
Query: 140 MITGLV----KWGELEYARSLFEEMPCRNVVSWTGILDGYT---------RMNRSNGAST 186
M+T +V K G+++YA LF ++ NV + I+ YT R+ + T
Sbjct: 44 MVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKT 103
Query: 187 --EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P T + + G+ + +HG+ K G F + N LID Y K +
Sbjct: 104 IEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFG-PRFHVVTENALIDMYMKFDDLVD 162
Query: 245 ALKLFEDISVER------------------------------KNLVSWTSIISGFAMHGM 274
A K+F+++S ER K +VSWT++ISG+ G
Sbjct: 163 AHKVFDEMS-ERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGC 221
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------C 313
A++ F MQ G++P+ ++ +SVL +C+H G L G
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNA 281
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
L++M + G L QA I L ++ DV+ ++ ++HGN R +EM+R
Sbjct: 282 LIEMYSKCGMLSQA--IQLFEQTKGKDVISWSTMISGYAYHGN---AHRAFETFIEMQRA 336
Query: 374 N 374
Sbjct: 337 K 337
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/470 (32%), Positives = 241/470 (51%), Gaps = 74/470 (15%)
Query: 9 TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS 68
T ++H L ++NT++ + P A LY Q++ + +RP D
Sbjct: 62 TMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQME------NRGVRP--DK 113
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN---------------------- 106
FT+SF+++ C LS+ LG +H + K GFQS+ +V
Sbjct: 114 FTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDA 173
Query: 107 ---------TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
+AL Y G L + +LFDE+P ++LV+WNVMIT K GE+E AR LF
Sbjct: 174 SAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLF 233
Query: 158 EEMPCRNVVSWTGILDGY--TRMNRS--------NGASTEPSEITILAVLPAIWQNGAVR 207
+E+P ++VV+W ++ GY +R+N+ P ++T+L++L A G +
Sbjct: 234 DEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLE 293
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IH + +SN LID YAKCG I +AL++F+ + +K+ SW SII
Sbjct: 294 IGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQ--GMRKKDTSSWNSIIG 351
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG------------------- 308
G A+HG + ++ F+ M ++ +KPN +TF++VL ACSH G
Sbjct: 352 GLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIE 411
Query: 309 ---LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VD+LGRAG L +A + E + ++ R LLGAC HG+VE+G R
Sbjct: 412 PNIKHYGCMVDILGRAGLLIEAFDFIDTMEIE-PNAIIWRTLLGACRVHGDVELGRRANE 470
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++L+M + GDYVL+ NI A G + +++R++MD+ K G SL+
Sbjct: 471 QLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLI 520
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 71/370 (19%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL--VNMYVSLGFLKDSS 123
F+ F S L + C ++ +L QLHA + G S V L V+ V G + +
Sbjct: 11 FNRFQQSSLWQKCT--NFRSL-KQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAH 67
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----------------VS 167
+LF ++ + ++ WN MI G + + A SL+ +M R V +S
Sbjct: 68 QLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLS 127
Query: 168 WTGILDG-YTRMNRSNGASTEPSEITI---------LAVLPAIWQNGAVRNC----QLIH 213
W + G + ++ +S S T+ LA A++ A R L
Sbjct: 128 WVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTA 187
Query: 214 GYGEKRGFNAF----------DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GY + + D+ N +I YAK G + A KLF++ V +K++V+W
Sbjct: 188 GYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDE--VPKKDVVTWN 245
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG---------- 312
++I+G+ + + K A+E F+ M+ +G +P+ VT LS+L+A + G L G
Sbjct: 246 AMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDM 305
Query: 313 -----------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
L+DM + G + A ++ G+ + D ++G + HG+ E
Sbjct: 306 CCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKK--DTSSWNSIIGGLALHGHAEESI 363
Query: 362 RVTRKVLEME 371
+ +++L ++
Sbjct: 364 NLFQEMLRLK 373
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 244/451 (54%), Gaps = 53/451 (11%)
Query: 1 SPSSN----NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYT 56
PSS + +RI S + N +FN ++ +S + +P +AF Y Q Q+
Sbjct: 61 DPSSGTSLIDYASRIFSQIQNPN-----LFIFNAMIRGHSGSKNPDQAFHFYVQSQR--- 112
Query: 57 HSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 116
L P D+ T+ FL+++C L ++G+Q H I K GF+ VYV +LV+MY +
Sbjct: 113 ---QGLLP--DNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATF 167
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G + ++ +F + ++V+W MI G K G++E AR LF++MP +N+V+W+ ++ GY
Sbjct: 168 GDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYA 227
Query: 177 RMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
+ N + A +E +++V+ + GA+ + H Y K G ++
Sbjct: 228 QNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMT-LNL 286
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ L+D YA+CG I A+ +FED+ ++ +SWT++I+G AMHG + +++ F M
Sbjct: 287 ILGTALVDMYARCGSIDKAVWVFEDLP--ERDTLSWTALIAGLAMHGYSERSLKYFATMV 344
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
+ GL P +TF +VL+ACSHGGL HYGC+VD+LGRAG+L
Sbjct: 345 EAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKL 404
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
E+AE+ L +P + + V LLGAC H N E+GERV + ++++ + G YVL+ NI
Sbjct: 405 EEAERFVLKMPVK-PNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNI 463
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A + +R++M + K PG SL+
Sbjct: 464 YANAKEWEKVTEMRQMMKAKGLKKPPGHSLI 494
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 236/431 (54%), Gaps = 38/431 (8%)
Query: 20 SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD--SFTYSFLIRT 77
S +HH F+ +LADS L+ + SH L + FT+ +++
Sbjct: 73 SQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKA 132
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVT 136
C L+ G QLH + K+G S +V + LV +YV G +KD+ LF + E N+V
Sbjct: 133 CAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVL 192
Query: 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------ST 186
WNVMI G V+ G+L +R LF+ MP ++VVSW ++ G + A
Sbjct: 193 WNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDV 252
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+ +T+++VLPA+ + GA+ + +H + EK D+ + + LID Y+KCG I A+
Sbjct: 253 PPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDV-LGSALIDMYSKCGSIDKAV 311
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++FE I +KN ++W++II G AMHG + A+++F RMQ+ G+ P+ V ++ VL+ACSH
Sbjct: 312 QVFEGIR-NKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSH 370
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HYGC+VD+LGRAG LE+AE++ L +P + DV++
Sbjct: 371 AGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVIL- 429
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
+ LLGAC HGN+EMGER+ + ++ + G YV + N+ A G + ++R M E
Sbjct: 430 KALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKEL 489
Query: 405 NALKFPGRSLV 415
+ K PG S +
Sbjct: 490 DIRKDPGCSWI 500
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 135/323 (41%), Gaps = 74/323 (22%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGF---LKDSSKLFDELPERNLVTWNVMITGLV 145
Q+HA K G Q H + A + +++L +K + K F ++ N +WN +I L
Sbjct: 33 QIHAHFIKTG-QIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALA 91
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGIL-DGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
LF ++ ++ +L DG EP++ T VL A +
Sbjct: 92 D----SDDDDLFHVNSLEALLYFSHMLTDGL----------VEPNKFTFPCVLKACAKLA 137
Query: 205 AVRNCQLIHGYGEKRGFNAFD------IRVS-------------------------NCLI 233
+ + +HG+ K G + + +RV N +I
Sbjct: 138 RIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMI 197
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y + G + ++ +LF+ S+ K++VSW +ISG A +G K A+E F MQ + PN
Sbjct: 198 DGYVRMGDLRASRELFD--SMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPN 255
Query: 294 RVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
VT +SVL A S G + G L+DM + G +++A ++
Sbjct: 256 YVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFE 315
Query: 333 GIPSEITDVVVRRILLGACSFHG 355
GI ++ + + ++G + HG
Sbjct: 316 GIRNK-KNPITWSAIIGGLAMHG 337
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/424 (34%), Positives = 229/424 (54%), Gaps = 45/424 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N ++ S +D P ++ LLY H +++T+ FL++ C LS
Sbjct: 75 TFLWNLMIRGLSCSDQPDRSLLLY--------HRMLCCSAPHNAYTFPFLLKACSNLSAF 126
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
TQ+HA I+K G+ +Y +L+N Y G K + LFD + E + V+WN +I G
Sbjct: 127 QETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGY 186
Query: 145 VKWGELEYARSLFEEMPCR-NVVSWTGILDGYTR--MNRS--------NGASTEPSEITI 193
VK GE++ A +LF +MP + N +SWT ++ GY + MN+ ++ P +++
Sbjct: 187 VKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSL 246
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ L A Q GA+ + IH Y K D + LID YAKCG + AL +F+++
Sbjct: 247 ASALSACSQLGALEQGKWIHSYANKTR-TRIDSVLCCVLIDMYAKCGEMEEALGVFKNMK 305
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
K++ WT++ISG+A HG+G+ A+ F MQ +G+KPN +TF +VL ACS+ GL
Sbjct: 306 T--KSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEG 363
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VD+LGRAG L +A + +P + + V+ LL AC
Sbjct: 364 KSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLK-PNAVIWGSLLKAC 422
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H N+E+GE++ ++EM+ +GG YV M NI A ++ A RR+M E+ +K PG
Sbjct: 423 QIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPG 482
Query: 412 RSLV 415
S +
Sbjct: 483 CSAI 486
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 228/422 (54%), Gaps = 44/422 (10%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T+++NT+L YS ++ P+ A LLY Q+ H+ P +S+T+ FL++ C LS
Sbjct: 74 NTVIWNTMLRAYSNSNDPEAALLLYHQM----LHNSVP----HNSYTFPFLLKACSALSA 125
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
Q+HA I K GF VY +L+ +Y G ++ + LF++LP R++V+WN+MI G
Sbjct: 126 FEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDG 185
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEITI 193
+K+G L+ A +F+ MP +NV+SWT ++ G+ R+ A +P IT+
Sbjct: 186 YIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITL 245
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
L A GA+ + IH Y EK D + L D Y KCG + AL +F +
Sbjct: 246 SCSLSACAGLGALEQGKWIHTYIEKNEIK-IDPVLGCVLTDMYVKCGEMEKALLVFSKL- 303
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
E+K + +WT+II G A+HG G+ A++ F +MQK G+ PN +TF ++L ACSH GL
Sbjct: 304 -EKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEG 362
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VD++GRAG L++A + +P + + + LL AC
Sbjct: 363 KSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVK-PNAAIWGALLNAC 421
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H + E+G+ + + ++E++ + G Y+ + +I A G + R+R + R L PG
Sbjct: 422 QLHKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPG 481
Query: 412 RS 413
S
Sbjct: 482 CS 483
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 96/239 (40%), Gaps = 63/239 (26%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
L Y R +F+ + N V W +L Y+ N A S + T +L A
Sbjct: 60 LAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKA 119
Query: 200 IWQNGAVRNCQLIHGYGEKRGF-------NAF-----------------------DIRVS 229
A Q IH + KRGF N+ DI
Sbjct: 120 CSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSW 179
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N +ID Y K G + A K+F+ ++ KN++SWT++I GF GM K A+ ++M G
Sbjct: 180 NIMIDGYIKFGNLDMAYKIFQ--AMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAG 237
Query: 290 LKPNRVTFLSVLNACSHGG-------LH-------------YGC-LVDMLGRAGRLEQA 327
+KP+ +T L+AC+ G +H GC L DM + G +E+A
Sbjct: 238 IKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKA 296
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 234/421 (55%), Gaps = 44/421 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N+ + +S + P K+F Y Q ++ + L P D+ TY FL++ C +
Sbjct: 79 FIYNSFIRGFSGSKDPDKSFHFYVQSKR------NGLVP--DNLTYPFLVKACTQKGSLD 130
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G Q H I + GF S VYV +LV MY +LG +K +S +F + ++V+W M+ G +
Sbjct: 131 MGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYI 190
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
K G++ AR LF++MP +N+V+W+ ++ GY + + + A +E +++
Sbjct: 191 KSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVS 250
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ + GA+ + H Y + ++ + L+D YA+CG I A+ +F+ +
Sbjct: 251 VIASCAHLGALELGERAHDYILRNKMTV-NLILGTALVDMYARCGSIDKAIWVFDQLP-- 307
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++ +SWT++I+GFAMHG + A+E F RM+K GL P +TF +VL+ACSHGGL
Sbjct: 308 GRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLE 367
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGRAG+L +AEK +P + + + LLGAC
Sbjct: 368 LFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMK-PNAPIWGALLGACRI 426
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
H N E+ ER + ++E++ + G YVL+ NI A ++ + E +R++M ER +K PG +
Sbjct: 427 HKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYT 486
Query: 414 L 414
L
Sbjct: 487 L 487
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 237/442 (53%), Gaps = 43/442 (9%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLY-KQLQQIYTHSHSPLRPLF 66
R+ +H+ N LH N ++ Y+ + A +Y + L+ + S S +
Sbjct: 61 AARVFAHVPAPNLHLH-----NAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVG 115
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FTY FL++ C L+ LG Q+HA +++ G +SH V +L+ MY G L + K+F
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D + E++ V+WN +I+ + G++ AR LF MP + VVSWT ++ GYT + GA
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVE 235
Query: 187 ----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP +++I+AVLPA Q GA+ + I+ Y K G I + N L++ Y
Sbjct: 236 VFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLG-KIYICNALMEMY 294
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRV 295
AKCGCI AL+LF +S K+++SW++ I G A HG + AV+ FE M + G + PN +
Sbjct: 295 AKCGCIEEALQLFHGMS--EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGI 352
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ +L+ACSH GL HYGC+VD+LGR+GR+++A G
Sbjct: 353 TFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGG 412
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P D + LL AC H +V+ +++E+E + G+ V++ N+ A GR+ +
Sbjct: 413 MPIP-PDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGN 471
Query: 394 AERLRRVMDERNALKFPGRSLV 415
R+ + R+ K PG S++
Sbjct: 472 VASTRKEIRSRSTRKTPGCSMI 493
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 240/457 (52%), Gaps = 79/457 (17%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVTL 81
+FNTL+ YS +D P + ++ ++ +R F DSF+++F+I+
Sbjct: 70 AFMFNTLVRGYSESDEPHNSVAVFVEM----------MRKGFVFPDSFSFAFVIKAVENF 119
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV------ 135
G Q+H K G +SH++V T L+ MY G ++ + K+FDE+ + NLV
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179
Query: 136 -------------------------TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+WNVM+ G +K GELE A+ +F EMP R+ VSW+
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 171 ILDGYTRMNRSNG----------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ G N A P+E+++ VL A Q+G+ +++HG+ EK G
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ ++ + V+N LID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+ AV
Sbjct: 300 Y-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVR 357
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
F M G+ P+ ++F+S+L+ACSH GL HYGC+VD+
Sbjct: 358 LFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLY 417
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR+G+L++A +P T +V R LLGACS HGN+E+ E+V +++ E++ N GD
Sbjct: 418 GRSGKLQKAYDFICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDL 476
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VL+ N A G++ D +R+ M + K SLV
Sbjct: 477 VLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLV 513
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 29/217 (13%)
Query: 75 IRTCVTL--SYPNLG--TQLHAVISKVGFQSHVYVNTALV-NMYVSLG-FLKDSSKLFDE 128
I C++L S NL TQ+H + K G + Y L+ + +S+ L + +L
Sbjct: 5 IHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLC 64
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
PE + +N ++ G + E + ++F EM + V P
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVF--------------------P 104
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ V+ A+ ++R +H K G + + V LI Y CGC+ A K+
Sbjct: 105 DSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLES-HLFVGTTLIGMYGGCGCVEFARKV 163
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
F+++ + NLV+W ++I+ A E F++M
Sbjct: 164 FDEM--HQPNLVAWNAVITACFRGNDVAGAREIFDKM 198
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 230/423 (54%), Gaps = 47/423 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y + A ++++QQ + P D T + C L LG
Sbjct: 266 WNVMISGYVRCRRFEDAINTFREMQQ--EGNEKP-----DEATVVSTLSACTALKNLELG 318
Query: 88 TQLHAVISK-VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
++H + K +GF + + + AL++MY G L + +FDE+ +N++ W MI+G +
Sbjct: 319 DEIHNYVRKELGFTTRI--DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 376
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
G+L AR LF++ P R+VV WT +++GY + + + A +P + T++ +
Sbjct: 377 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTL 436
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L Q GA+ + IHGY ++ D+ V LI+ Y+KCGC+ +L++F ++ E
Sbjct: 437 LTGCAQLGALEQGKWIHGYLDENRI-TMDVVVGTALIEMYSKCGCVDKSLEIFYEL--ED 493
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K+ SWTSII G AM+G A+ F M++VG KP+ +TF+ VL+ACSHGGL
Sbjct: 494 KDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRF 553
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR--ILLGACS 352
HYGC++D+LGRAG L++AE++ IP E ++VV LL AC
Sbjct: 554 FNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACR 613
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NV+MGER+ +K+ +E + + L+ NI A V R+ DA+++RR M E K PG
Sbjct: 614 IHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGC 673
Query: 413 SLV 415
SL+
Sbjct: 674 SLI 676
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 70/322 (21%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N ++ Y+ +K LL++QL++ L P D FTY F+++ L
Sbjct: 163 FVYNVMVKIYAKRGILRKVLLLFQQLRE------DGLWP--DGFTYPFVLKAIGCLRDVR 214
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G ++ I K G YV +L++MY L ++++ KLFDE+ R+ V+WNVMI+G V
Sbjct: 215 QGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYV 274
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ E A + F EM + +P E T+++ L A A
Sbjct: 275 RCRRFEDAINTFREM--------------------QQEGNEKPDEATVVSTLSAC---TA 311
Query: 206 VRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
++N +L IH Y K F R+ N L+D YAKCGC+ A +F+++S+ KN++ W
Sbjct: 312 LKNLELGDEIHNYVRKEL--GFTTRIDNALLDMYAKCGCLNIARNIFDEMSM--KNVICW 367
Query: 263 TSIISGFAMHGMGKAAVENFER-------------------------------MQKVGLK 291
TS+ISG+ G + A + F++ MQ +K
Sbjct: 368 TSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIK 427
Query: 292 PNRVTFLSVLNACSH-GGLHYG 312
P++ T +++L C+ G L G
Sbjct: 428 PDKFTVVTLLTGCAQLGALEQG 449
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 47/269 (17%)
Query: 57 HSHSPL-------RPLFDSFTYSFL----------IRTCVTLSYPNLGTQLHAVISKVGF 99
HS SP+ +P F S + S L +R C ++ Q+ + I ++G
Sbjct: 69 HSKSPVYIPSFFFKPPFSSSSASNLQTNKKSCIECLRNCKSMDQLK---QIQSQIFRIGL 125
Query: 100 QSHVYVNTALVNMYV--SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
+ L+ SLG L+ + K+F+ + + +L +NVM+ K G L LF
Sbjct: 126 EGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLF 185
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
+++ R +G P T VL AI VR + + G+
Sbjct: 186 QQL-------------------REDGLW--PDGFTYPFVLKAIGCLRDVRQGEKVRGFIV 224
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K G + D V N LID Y + + +A KLF++++ ++ VSW +ISG+ +
Sbjct: 225 KTGMD-LDNYVYNSLIDMYYELSNVENAKKLFDEMTT--RDSVSWNVMISGYVRCRRFED 281
Query: 278 AVENFERMQKVG-LKPNRVTFLSVLNACS 305
A+ F MQ+ G KP+ T +S L+AC+
Sbjct: 282 AINTFREMQQEGNEKPDEATVVSTLSACT 310
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 240/457 (52%), Gaps = 79/457 (17%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVTL 81
+FNTL+ YS +D P + ++ ++ +R F DSF+++F+I+
Sbjct: 62 AFMFNTLVRGYSESDEPHNSVAVFVEM----------MRKGFVFPDSFSFAFVIKAVENF 111
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV------ 135
G Q+H K G +SH++V T L+ MY G ++ + K+FDE+ + NLV
Sbjct: 112 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 171
Query: 136 -------------------------TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+WNVM+ G +K GELE A+ +F EMP R+ VSW+
Sbjct: 172 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 231
Query: 171 ILDGYTRMNRSNG----------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ G N A P+E+++ VL A Q+G+ +++HG+ EK G
Sbjct: 232 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 291
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ ++ + V+N LID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+ AV
Sbjct: 292 Y-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVR 349
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
F M G+ P+ ++F+S+L+ACSH GL HYGC+VD+
Sbjct: 350 LFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLY 409
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR+G+L++A +P T +V R LLGACS HGN+E+ E+V +++ E++ N GD
Sbjct: 410 GRSGKLQKAYDFICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDL 468
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VL+ N A G++ D +R+ M + K SLV
Sbjct: 469 VLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLV 505
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 88 TQLHAVISKVGFQSHVYVNTALV-NMYVSLG-FLKDSSKLFDELPERNLVTWNVMITGLV 145
TQ+H + K G + Y L+ + +S+ L + +L PE + +N ++ G
Sbjct: 14 TQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYS 73
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ E + ++F EM + V P + V+ A+ +
Sbjct: 74 ESDEPHNSVAVFVEMMRKGFVF--------------------PDSFSFAFVIKAVENFRS 113
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+R +H K G + + V LI Y CGC+ A K+F+++ + NLV+W ++
Sbjct: 114 LRTGFQMHCQALKHGLES-HLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPNLVAWNAV 170
Query: 266 ISGFAMHGMGKAAVENFERM 285
I+ A E F++M
Sbjct: 171 ITACFRGNDVAGAREIFDKM 190
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 230/423 (54%), Gaps = 47/423 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y + A ++++QQ + P D T + C L LG
Sbjct: 312 WNVMISGYVRCRRFEDAINTFREMQQ--EGNEKP-----DEATVVSTLSACTALKNLELG 364
Query: 88 TQLHAVISK-VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
++H + K +GF + + + AL++MY G L + +FDE+ +N++ W MI+G +
Sbjct: 365 DEIHNYVRKELGFTTRI--DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 422
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
G+L AR LF++ P R+VV WT +++GY + + + A +P + T++ +
Sbjct: 423 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTL 482
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L Q GA+ + IHGY ++ D+ V LI+ Y+KCGC+ +L++F ++ E
Sbjct: 483 LTGCAQLGALEQGKWIHGYLDENRI-TMDVVVGTALIEMYSKCGCVDKSLEIFYEL--ED 539
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K+ SWTSII G AM+G A+ F M++VG KP+ +TF+ VL+ACSHGGL
Sbjct: 540 KDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRF 599
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR--ILLGACS 352
HYGC++D+LGRAG L++AE++ IP E ++VV LL AC
Sbjct: 600 FNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACR 659
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NV+MGER+ +K+ +E + + L+ NI A V R+ DA+++RR M E K PG
Sbjct: 660 IHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGC 719
Query: 413 SLV 415
SL+
Sbjct: 720 SLI 722
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 70/322 (21%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N ++ Y+ +K LL++QL++ L P D FTY F+++ L
Sbjct: 209 FVYNVMVKMYAKRGILRKVLLLFQQLRE------DGLWP--DGFTYPFVLKAIGCLRDVR 260
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G ++ I K G YV +L++MY L ++++ KLFDE+ R+ V+WNVMI+G V
Sbjct: 261 QGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYV 320
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ E A + F EM + +P E T+++ L A A
Sbjct: 321 RCRRFEDAINTFREM--------------------QQEGNEKPDEATVVSTLSAC---TA 357
Query: 206 VRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
++N +L IH Y K F R+ N L+D YAKCGC+ A +F+++S+ KN++ W
Sbjct: 358 LKNLELGDEIHNYVRKEL--GFTTRIDNALLDMYAKCGCLNIARNIFDEMSM--KNVICW 413
Query: 263 TSIISGFAMHGMGKAAVENFER-------------------------------MQKVGLK 291
TS+ISG+ G + A + F++ MQ +K
Sbjct: 414 TSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVK 473
Query: 292 PNRVTFLSVLNACSH-GGLHYG 312
P++ T +++L C+ G L G
Sbjct: 474 PDKFTVVTLLTGCAQLGALEQG 495
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYV--SLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+ + I ++G + L+ SLG L+ + K+F+ + + +L +NVM+ K
Sbjct: 161 QIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAK 220
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G L LF+++ R +G P T VL AI V
Sbjct: 221 RGILRKVLLLFQQL-------------------REDGLW--PDGFTYPFVLKAIGCLRDV 259
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
R + + G+ K G + D V N LID Y + + +A KLF++++ ++ VSW +I
Sbjct: 260 RQGEKVRGFIVKTGMD-LDNYVYNSLIDMYYELSNVENAKKLFDEMTT--RDSVSWNVMI 316
Query: 267 SGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACS 305
SG+ + A+ F MQ+ G KP+ T +S L+AC+
Sbjct: 317 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/423 (33%), Positives = 235/423 (55%), Gaps = 39/423 (9%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L+N ++ Y A ++KQ+ ++H +P P D FT+ F+++ C L
Sbjct: 51 AFLYNAMIRAYKHNKVYILAITVHKQMLG-HSHGENPXFP--DKFTFPFVVKXCAGLMCY 107
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
NLG Q+H K G +S+ + +LV MYV L D+ ++F+E+ ER+ V+WN +I+G
Sbjct: 108 NLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGH 167
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITIL 194
V+ G++ AR++FEE+ + + SWT I+ GY R+ R E EI+++
Sbjct: 168 VRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLV 227
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+VLPA Q GA+ + IH Y +K GF DI V N LI+ YAK G + +LF ++
Sbjct: 228 SVLPACAQLGALELGKWIHIYADKAGF-LRDICVCNALIEVYAKRGSMDEGRRLFHKMN- 285
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++++SW+++I G A HG + A+E F+ MQK ++PN +TF+ +L+AC+H GL
Sbjct: 286 -ERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGL 344
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLV++LG +GRL+QA ++ +P + D + +L +C
Sbjct: 345 GYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMK-PDSDIWGLLSSSCR 403
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGN+E+ +LE+E + G+Y+ + N+ A +G++ R+R++M + K PG
Sbjct: 404 SHGNLEIVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGC 463
Query: 413 SLV 415
S +
Sbjct: 464 SSI 466
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 130/318 (40%), Gaps = 76/318 (23%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR--------------MNRSNGASTE-PSEIT 192
GE EYA LF+ + N + ++ Y + S+G + P + T
Sbjct: 34 GETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFT 93
Query: 193 ILAVLPAIWQNGAVRNC----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
P + + A C + +HG+ K G + + + N L++ Y KC + A ++
Sbjct: 94 ----FPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTV-IENSLVEMYVKCDSLDDAHRV 148
Query: 249 FEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGKAAV 279
FE+++ ++ K + SWT+I+SG+A G A+
Sbjct: 149 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVAL 208
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLG-RAGRLEQAEKIALGIPSE 337
E F RMQ V ++ + ++ +SVL AC+ G L G + + +AG L
Sbjct: 209 EFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLR------------ 256
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA--- 394
D+ V L+ + G+++ G R+ K M + + M LA GR +A
Sbjct: 257 --DICVCNALIEVYAKRGSMDEGRRLFHK---MNERDVISWSTMIVGLANHGRAREAIEL 311
Query: 395 -ERLRRVMDERNALKFPG 411
+ +++ E N + F G
Sbjct: 312 FQEMQKAKVEPNIITFVG 329
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/435 (34%), Positives = 244/435 (56%), Gaps = 58/435 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ S ++ P A L++ ++ + S P + FT+ + + C G
Sbjct: 79 YNTLIRALSESNDPCDALLVF--IEMVEDCSVEP-----NCFTFPSVFKACGRAERLREG 131
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF---------DELPER------ 132
Q+H + K G S +V + +V MY+S G ++D+ +LF D + ++
Sbjct: 132 RQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDG 191
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSN 182
++V WNVMI G V+ GELE AR+LF+EMP R+VVSW ++ GY +
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
A P+ +T+++VLPA+ + GA+ + +H Y + D+ + + LID YAKCG I
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV-LGSALIDMYAKCGSI 310
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
AL++FE + ++N+V+W++II+G AMHG K +++FE M++ G+ P+ VT++ +L+
Sbjct: 311 EKALQVFE--GLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLS 368
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HYGC+VD+LGRAG LE++E++ L +P + D
Sbjct: 369 ACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD 428
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V+ + LLGAC HGNVEMG+RV ++E+ + G YV + NI A +G + ++R +
Sbjct: 429 VIW-KALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLM 487
Query: 401 MDERNALKFPGRSLV 415
M E + K PG S +
Sbjct: 488 MKEMDVRKDPGCSWI 502
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/424 (34%), Positives = 227/424 (53%), Gaps = 45/424 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+ L+ Y+L ++ LLY +++ + P+ SFT++ L++ C N
Sbjct: 105 FLWTALIRGYALQGPFMESVLLYNSMRR------QGIGPV--SFTFTALLKACSAALDVN 156
Query: 86 LGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG Q+H I GF S +YV L++MYV G L ++FDE+ +R++++W +I
Sbjct: 157 LGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAY 216
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITIL 194
K G +E A LF+ +P +++V+WT ++ GY + R A + E+T++
Sbjct: 217 AKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLV 276
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
V+ A Q GA + + E+ GF ++ V + LID YAKCG + A K+FE
Sbjct: 277 GVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE--R 334
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+E +N+ S++S+I GFAMHG+ AA+E F+ M K +KPNRVTF+ VL ACSH G+
Sbjct: 335 MEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQG 394
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGRAGRLE+A + +P V LLGAC
Sbjct: 395 QQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMN-PHGGVWGALLGAC 453
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HGN +M + + E+E G+Y+L+ NI A GR+ D ++R++M + K PG
Sbjct: 454 RIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPG 513
Query: 412 RSLV 415
S V
Sbjct: 514 CSWV 517
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 135/350 (38%), Gaps = 103/350 (29%)
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITILAVLPAIW 201
Y R +F+++ N WT ++ GY N P T A+L A
Sbjct: 91 YPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACS 150
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--------- 252
V + +H G D+ V N LID Y KCGC+ ++F+++
Sbjct: 151 AALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWT 210
Query: 253 --------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
+ K++V+WT++++G+A + + A+E FERMQ G+K
Sbjct: 211 SLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKT 270
Query: 293 NRVTFLSVLNACSH-GGLHYG----------------------CLVDMLGRAGRLEQAEK 329
+ VT + V++AC+ G Y L+DM + G +E A K
Sbjct: 271 DEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYK 330
Query: 330 I---------------------------ALGIPSEI--TDVVVRRI----LLGACSFHGN 356
+ A+ + E+ T++ R+ +L ACS G
Sbjct: 331 VFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGM 390
Query: 357 VEMGERVTRKVLEMERGNG-----GDYVLMYNILAGVGRYVDAERLRRVM 401
VE G+++ ME +G Y M ++L GR +A L ++M
Sbjct: 391 VEQGQQL---FAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMM 437
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 229/423 (54%), Gaps = 47/423 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L+ Y + A +++++QQ S LRP + T + C+ L LG
Sbjct: 201 WNVLISGYVKCRRYEDAVDVFRRMQQ-----QSSLRP--NEATVVSTLSACIALKMLELG 253
Query: 88 TQLHAVI-SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
++H + ++GF + + ALV+MY G L + ++F+++P + ++ W M++G V
Sbjct: 254 KEIHRYVREQLGFT--IKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVN 311
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
G+L+ AR LFE P R+VV WT +++GY + NR + A P T++A+
Sbjct: 312 CGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVAL 371
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L Q G + + IHGY ++ D V LI+ YAKCG I +L++F ++
Sbjct: 372 LTGCAQLGTLEQGKWIHGYIDENKI-MIDAVVGTALIEMYAKCGFIEKSLEIFN--GLKE 428
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K+ SWTSII G AM+G A+E F M + G+KP+ +TF+ VL+ACSHGGL
Sbjct: 429 KDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKH 488
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR--ILLGACS 352
HYGCL+D+LGRAG+L++AE++ P+ +V+V LL AC
Sbjct: 489 FRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACR 548
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNVEMGERV ++++ +E G+ + L+ NI A R+ D ++RR M + K PG
Sbjct: 549 THGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGC 608
Query: 413 SLV 415
S V
Sbjct: 609 SSV 611
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 170/367 (46%), Gaps = 86/367 (23%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N ++ ++ S +KA LL++QL++ SP D+FTY F+ + L
Sbjct: 98 FIYNLVIKAFTKNGSFRKAVLLFRQLRE---EGLSP-----DNFTYPFVFKAIGCLGEVR 149
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G +++ + K G + YV +L++MY +G +++ ++F+E+P+R++V+WNV+I+G V
Sbjct: 150 EGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYV 209
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K CR + +D + RM + +S P+E T+++ L A
Sbjct: 210 K---------------CRR---YEDAVDVFRRMQQQ--SSLRPNEATVVSTLSACIALKM 249
Query: 206 VRNCQLIHGY-GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + IH Y E+ GF I++ N L+D Y KCG + A ++F D+ + K ++ WTS
Sbjct: 250 LELGKEIHRYVREQLGFT---IKIGNALVDMYCKCGHLSIAREIFNDMPI--KTVICWTS 304
Query: 265 IISGFAMHGMGKAAVENFER-------------------------------MQKVGLKPN 293
++SG+ G A E FER MQ + P+
Sbjct: 305 MVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPD 364
Query: 294 RVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
R T +++L C+ G L G L++M + G +E++ +I
Sbjct: 365 RFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFN 424
Query: 333 GIPSEIT 339
G+ + T
Sbjct: 425 GLKEKDT 431
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 165/391 (42%), Gaps = 69/391 (17%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL-----SYPNLGTQLHAVISK 96
+ F L+K +T H +PL S + F ++C+ L S +L Q+ I +
Sbjct: 4 QTKFQLFK-----FTSLHFLSKPLHLSTSSHFTKKSCIFLLKNCKSMQHL-KQIQTQILR 57
Query: 97 VGF-QSHVYVNTALVNMY-VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
GF QS +N +V S+G L + ++F+ + L +N++I K G A
Sbjct: 58 TGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAV 117
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
LF ++ R G S P T V AI G VR + ++G
Sbjct: 118 LLFRQL-------------------REEGLS--PDNFTYPFVFKAIGCLGEVREGEKVYG 156
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+ K G FD V N L+D YA+ G + + ++FE++ ++++VSW +ISG+
Sbjct: 157 FVVKSGLE-FDTYVCNSLMDMYAEVGRVQNLRQVFEEMP--QRDVVSWNVLISGYVKCRR 213
Query: 275 GKAAVENFERM-QKVGLKPNRVTFLSVLNAC-SHGGLHYG-------------------C 313
+ AV+ F RM Q+ L+PN T +S L+AC + L G
Sbjct: 214 YEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNA 273
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
LVDM + G L A +I D+ ++ ++ G V G+ + L ER
Sbjct: 274 LVDMYCKCGHLSIAREI-------FNDMPIKTVICWTSMVSGYVNCGQLDEAREL-FERS 325
Query: 374 NGGDYVL---MYNILAGVGRYVDAERLRRVM 401
D VL M N R+ DA L R M
Sbjct: 326 PVRDVVLWTAMINGYVQFNRFDDAVALFREM 356
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 230/423 (54%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+++NT++ YS ++ P++A LLY Q+ H P +++T+ FL++ C LS
Sbjct: 76 TVMWNTMIRAYSNSNDPEEALLLYHQM----LHHSIP----HNAYTFPFLLKACSALSAL 127
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
Q+H I K GF S VY +L+ +Y G +K + LFD LP R++V+WN MI G
Sbjct: 128 AETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGY 187
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITIL 194
+K G +E A +F+ MP +NV+SWT ++ G+ R + + A +P +IT+
Sbjct: 188 IKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLS 247
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A GA+ + IH Y K D + LID Y KCG + AL +F +
Sbjct: 248 CSLSACAGLGALEQGKWIHTYIGKNKIK-IDPVLGCALIDMYVKCGEMKKALLVFSKL-- 304
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E+K + +WT+II GFA+HG G A++ F +MQK G+KP TF +VL ACSH GL
Sbjct: 305 EKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGK 364
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG L++A++ +P + + + LL AC
Sbjct: 365 SLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIK-PNAAIWGSLLNACH 423
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H ++E+G+ + + ++E++ + G Y+ + +I A G + +A ++R + + L PG
Sbjct: 424 LHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGC 483
Query: 413 SLV 415
S +
Sbjct: 484 STI 486
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 63/244 (25%)
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
+++ L YAR +F+ + N V W ++ Y+ N A S + T
Sbjct: 56 MEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFP 115
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNA------------------------FDIRVS- 229
+L A A+ IH KRGF + FD+ S
Sbjct: 116 FLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSR 175
Query: 230 -----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
N +ID Y KCG + A K+F+ ++ KN++SWTS+I GF GM K A+ ++
Sbjct: 176 DIVSWNTMIDGYIKCGNVEMAYKIFQ--AMPEKNVISWTSMIVGFVRTGMHKEALCLLQQ 233
Query: 285 MQKVGLKPNRVTFLSVLNACSHGG-------LH-------------YGC-LVDMLGRAGR 323
M G+KP+++T L+AC+ G +H GC L+DM + G
Sbjct: 234 MLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGE 293
Query: 324 LEQA 327
+++A
Sbjct: 294 MKKA 297
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 221/381 (58%), Gaps = 36/381 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D+FT SF+++ C+ LS G +H + K+GF S++++ ++N+Y G + D+
Sbjct: 7 LPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAML 66
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
LF+++P+R+ VTWN++I L K G+++ A F MP +NV SWT ++ G+ + + N A
Sbjct: 67 LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEA 126
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
+ P+E+T+++VL A G + +++H Y K GF ++ V N LID
Sbjct: 127 IDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKR-NVHVCNTLID 185
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y KCGC+ +A ++F ++ E + +VSW+++I+G AMHG + A+ F M K+G+KPN
Sbjct: 186 MYVKCGCLENARRVFYEM--EERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNG 243
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTF+ +L+ACSH GL HYGC+VD+ RAG LE+A + L
Sbjct: 244 VTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFIL 303
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + + VV LLG C H N+++ E + + E++ N G YV++ NI A R+
Sbjct: 304 SMPIK-PNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWE 362
Query: 393 DAERLRRVMDERNALKFPGRS 413
DA R+R++M +R K G S
Sbjct: 363 DAARVRKLMKDRGVKKTSGWS 383
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 142/423 (33%), Positives = 235/423 (55%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N ++ +S +D P+++ LLY+++ +P +++T+ L++ C LS
Sbjct: 109 TFLWNLMIRGFSCSDEPERSLLLYQRM----LCCSAP----HNAYTFPSLLKACSNLSAL 160
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
TQ+HA I+K+G+++ VY +L+N Y + G K + LFD +P+ + V+WN +I G
Sbjct: 161 EETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGY 220
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITIL 194
K G+++ A +LF +M +N +SWT ++ GY + + + EP +++
Sbjct: 221 AKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLA 280
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A Q GA+ + IH Y K D + LID YAKCG + AL++F++I
Sbjct: 281 NALSACAQLGALEQGKWIHSYLTKTRIR-MDSVLGCVLIDMYAKCGDMGEALEVFKNI-- 337
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+RK++ +WT++ISG+A HG G+ A+ F MQK+G+KPN +TF +VL ACS+ GL
Sbjct: 338 QRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGK 397
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+L RAG L++A++ +P + + V+ LL AC
Sbjct: 398 LIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLK-PNAVIWGALLKACR 456
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H N+E+GE + ++ ++ +GG YV NI A ++ A RR+M E+ K PG
Sbjct: 457 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGC 516
Query: 413 SLV 415
S +
Sbjct: 517 STI 519
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 147/348 (42%), Gaps = 52/348 (14%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL---GFLK 120
PL Y + T S Q+HA + K G Y T ++ +S FL
Sbjct: 36 PLLSGSCYCMMPNTETRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLP 95
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGILDGYT 176
+ +FD + WN+MI G E E + L++ M C N ++ +L +
Sbjct: 96 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACS 155
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN----AFDIRVS--- 229
++ + ++IT L ++N LI+ Y F FD R+
Sbjct: 156 NLSALEETTQIHAQITKLG-----YENDVYAVNSLINSYAATGNFKLAHLLFD-RIPKPD 209
Query: 230 ----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
N +I YAK G + AL LF + VE KN +SWT++ISG+ GM K A++ F M
Sbjct: 210 AVSWNSVIKGYAKAGKMDIALTLFRKM-VE-KNAISWTTMISGYVQAGMHKEALQLFHEM 267
Query: 286 QKVGLKPNRVTFLSVLNACSHGG-------LH-------------YGC-LVDMLGRAGRL 324
Q ++P+ V+ + L+AC+ G +H GC L+DM + G +
Sbjct: 268 QNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDM 327
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
+A ++ I + V L+ ++HG+ G K +EM++
Sbjct: 328 GEALEVFKNIQRK--SVQAWTALISGYAYHGH---GREAISKFMEMQK 370
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 234/429 (54%), Gaps = 51/429 (11%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ Y ++S +KA LLYK + + + + P D++TY +++ C
Sbjct: 95 FMWNTMMRAYIQSNSAEKALLLYKLMVK------NNVGP--DNYTYPLVVQACAVRLLEF 146
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G ++H + KVGF S VYV L+NMY G ++D+ KLFDE P + V+WN ++ G V
Sbjct: 147 GGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYV 206
Query: 146 KWGELEY---ARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEIT 192
K G++ A LF EM +++VSW+ ++ GY + N E+
Sbjct: 207 KKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVV 266
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI----DTYAKCGCIFSALKL 248
+++VL A V+ ++IHG + G ++ + + N LI D Y KCGC+ +AL++
Sbjct: 267 VVSVLSACAHLSIVKTGKMIHGLVIRMGIESY-VNLQNALIHMYSDMYMKCGCVENALEV 325
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F +E K + SW ++I G A++G+ + +++ F M+ G+ PN +TF+ VL AC H G
Sbjct: 326 FN--GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMG 383
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HYGC+VD+LGRAG L +AEK+ +P DV
Sbjct: 384 LVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMA-PDVATWGA 442
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LLGAC HG+ EMGERV RK++E++ + G +VL+ NI A G + D +R +M ++
Sbjct: 443 LLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGV 502
Query: 407 LKFPGRSLV 415
+K PG SL+
Sbjct: 503 VKTPGCSLI 511
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 67/259 (25%)
Query: 89 QLHAVISKV---GFQSHVYVNTALVNMYVSLGF--LKDSSKLFDELPERNLVTWNVMITG 143
Q + ++S++ GF S + + L+ F L S ++FD + N WN M+
Sbjct: 44 QFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRA 103
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
++ E A L++ M NV D YT P + Q
Sbjct: 104 YIQSNSAEKALLLYKLMVKNNVGP-----DNYT--------------------YPLVVQA 138
Query: 204 GAVRNCQL----IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV----- 254
AVR + IH + K GF++ D+ V N LI+ YA CG + A KLF++ V
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDS-DVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 197
Query: 255 ---------------------------ERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+ K++VSW+++ISG+ +GM + A+ F M
Sbjct: 198 WNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA 257
Query: 288 VGLKPNRVTFLSVLNACSH 306
G++ + V +SVL+AC+H
Sbjct: 258 NGMRLDEVVVVSVLSACAH 276
>gi|225433481|ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510 [Vitis vinifera]
gi|298205226|emb|CBI17285.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/396 (34%), Positives = 212/396 (53%), Gaps = 36/396 (9%)
Query: 54 IYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113
++ H H+ P D+F + +++C PNLG +HA ++K S+ +V ALV+MY
Sbjct: 33 LFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIHAHVTKFSLVSNPFVACALVDMY 92
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIL 172
+ + LFDE+P RN+V WN MI+ G + A LFE M N ++ I+
Sbjct: 93 GKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAII 152
Query: 173 DGYTRMN-----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
G + + R + + IT+LA+LPA A+ + IHGY + G
Sbjct: 153 SGLSGLEDGSFKALSFYRRMGEVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGI 212
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
+ + +CL++ Y +CGCI ++ +F+ IS+ +++V+W+S+IS +A+HG + A+E
Sbjct: 213 DPHP-HLRSCLVEAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALET 271
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
FE+M+ ++P+ +TFL VL ACSH GL HY C+VD L
Sbjct: 272 FEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALS 331
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
RAGRL +A +I G+P + T LLGAC +G VE+ E R + E+E N +YV
Sbjct: 332 RAGRLYEAYEIIQGMPVKST-AKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYV 390
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L+ I A VGR+ +A+R+RR M+E PG S V
Sbjct: 391 LLARIYASVGRHEEAQRMRREMNEMGVKAAPGSSWV 426
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 226/427 (52%), Gaps = 51/427 (11%)
Query: 25 TLLFNTLLH-FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
T L+NTL F+SL+ +P + L Y + Q H +P ++FT+ LIR C
Sbjct: 67 TFLYNTLFKAFFSLSQTPSLSLLFYSHMLQ---HCVTP-----NAFTFPSLIRAC---KL 115
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
QLHA + K GF Y L+++Y + G L D+ ++F + + N+V+W +++G
Sbjct: 116 EEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSG 175
Query: 144 LVKWGELEYARSLFEEMPCR-NVVSWTGILDGYTRMNRSNGA-----------STEPSEI 191
+WG ++ A +FE MPC+ N VSW ++ + + NR A E
Sbjct: 176 YSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRF 235
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+L A GA+ IH Y EK G D +++ +ID Y KCGC+ A +F
Sbjct: 236 VAATMLSACTGVGALEQGMWIHKYVEKTGI-VLDSKLATTIIDMYCKCGCLDKAFHVFCG 294
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGL- 309
+ V+R + SW +I GFAMHG G+ A+ F+ M++ + P+ +TF++VL AC+H GL
Sbjct: 295 LKVKR--VSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLV 352
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGC+VD+L RAGRLE+A+K+ +P D V LL
Sbjct: 353 EEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMS-PDAAVLGALL 411
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
GAC HGN+E+GE V +V+E++ N G YV++ N+ A G++ +R++MD+R K
Sbjct: 412 GACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKK 471
Query: 409 FPGRSLV 415
PG S++
Sbjct: 472 EPGFSMI 478
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 225/395 (56%), Gaps = 37/395 (9%)
Query: 52 QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALV 110
QQ H+ + LR ++ S + R L +L QLH+++ + G S +V+++LV
Sbjct: 61 QQTSDHAAALLRRVYPSVYLRDVARLPPHLLRRSLLGQLHSLLLRTGHVASDAHVSSSLV 120
Query: 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+Y + G + D+ +FDE+ R++V WNVMI G VK G+ +AR LF+ MP RNVVSWT
Sbjct: 121 QLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTT 180
Query: 171 ILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ GY +M R A E + +L+VL A GAV + +H + +RG
Sbjct: 181 VIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRG 240
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+I + N +ID Y KCGCI A+++FE +E K++V+WT++I+GFA+HG+G AVE
Sbjct: 241 LCQ-EIPLMNSIIDMYMKCGCIEKAVEVFE--GMEEKSVVTWTTLIAGFALHGLGLQAVE 297
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
F RM++ + PN VTFL++L+ACSH GL HYGC+VD+L
Sbjct: 298 MFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLL 357
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRAG L++A+ + +P + + + LL A HG+ +GE+ ++E+E N G+Y
Sbjct: 358 GRAGCLKEAQDLVKNMPLK-ANAAIWGALLAAARTHGDAGLGEQALLHLIELEPNNSGNY 416
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+L+ NI A R+ D +LR+ M ER PG S
Sbjct: 417 ILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGAS 451
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 236/459 (51%), Gaps = 78/459 (16%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS----PLRPLFDSFTYSFLIRTCVTL 81
++NTL+ + +D+P+ A +Y ++ + HS LRP D T+ F++R C +
Sbjct: 74 FMYNTLIRGAAHSDAPRDAVSIYARMAR---HSADCDLMTLRP--DKRTFPFVLRACAAM 128
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS------------------ 123
G Q+HA + K G +S +V AL+ M+ +LG L ++
Sbjct: 129 GAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMI 188
Query: 124 -------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+LFDE P ++LV+WNVMIT K G++ AR LF+ P R+VVSW
Sbjct: 189 SGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNA 248
Query: 171 ILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ GY R A +P +T+L++L A +G + + +HG+ R
Sbjct: 249 MISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGR- 307
Query: 221 FNAFD--IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
F+ + N LID YAKCG + SAL++F ++ KN+ +W SII G A+HG +
Sbjct: 308 FSRIGPTTALGNALIDMYAKCGSMTSALEVF--WLMQDKNVSTWNSIIGGLALHGHATES 365
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+ F +M + +KP+ +TF++VL ACSHGG+ HYGC+VD
Sbjct: 366 IAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVD 425
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
ML R G L++A + +G + V+ R LLGAC HG +E+ E R++L+ G
Sbjct: 426 MLSRGGLLKEAFEF-IGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASG 484
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
D+VL+ NI A VG + +E +R++MD+ K GR+++
Sbjct: 485 DFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVI 523
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 236/459 (51%), Gaps = 78/459 (16%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS----PLRPLFDSFTYSFLIRTCVTL 81
++NTL+ + +D+P+ A +Y ++ + HS LRP D T+ F++R C +
Sbjct: 74 FMYNTLIRGAAHSDAPRDAVSIYARMAR---HSADCDLMTLRP--DKRTFPFVLRACAAM 128
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS------------------ 123
G Q+HA + K G +S +V AL+ M+ +LG L ++
Sbjct: 129 GAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMI 188
Query: 124 -------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+LFDE P ++LV+WNVMIT K G++ AR LF+ P R+VVSW
Sbjct: 189 SGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNA 248
Query: 171 ILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ GY R A +P +T+L++L A +G + + +HG+ R
Sbjct: 249 MISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGR- 307
Query: 221 FNAFD--IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
F+ + N LID YAKCG + SAL++F ++ KN+ +W SII G A+HG +
Sbjct: 308 FSRIGPTTALGNALIDMYAKCGSMTSALEVF--WLMQDKNVSTWNSIIGGLALHGHATES 365
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+ F +M + +KP+ +TF++VL ACSHGG+ HYGC+VD
Sbjct: 366 IAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVD 425
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
ML R G L++A + +G + V+ R LLGAC HG +E+ E R++L+ G
Sbjct: 426 MLSRGGLLKEAFEF-IGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASG 484
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
D+VL+ NI A VG + +E +R++MD+ K GR+++
Sbjct: 485 DFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVI 523
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 207/362 (57%), Gaps = 37/362 (10%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG QLH+VI + G S +V+ +L+ Y S G + + +FD+ ++++ WNVMI+G
Sbjct: 86 TLGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGY 145
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITI 193
VK G L AR LF+ MP RNVVSWT ++ Y +M + A EP + +
Sbjct: 146 VKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVAL 205
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
L+VL A GAV + +H + +RG + I + N +ID Y K GC+ A+++FE
Sbjct: 206 LSVLSACGDLGAVDLGEWVHRFVVRRGL-CWQIPLMNAIIDMYVKLGCVRKAVEVFE--G 262
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+++K++V+WT++I+GFA+HG+G A+E F RM+ + PN VTFL++L+ACSH GL
Sbjct: 263 MDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLG 322
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VD+LGRAG L +A+ + +P + + + LL A
Sbjct: 323 RWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFK-ANAAIWGALLAAA 381
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG+ E+G++ ++E+E N G+Y+L+ NI A R+ D +LR+ M +R PG
Sbjct: 382 RTHGDAELGKQALLHLIELEPHNSGNYILLSNIYAEQERWDDVSKLRKQMKDRGLRNVPG 441
Query: 412 RS 413
S
Sbjct: 442 AS 443
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 110/260 (42%), Gaps = 42/260 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ Y+ P +A +++++Q + P D ++ C L +LG
Sbjct: 169 WTTVIGAYAQMKQPVEAVEVFRRMQ-----VEEGIEP--DGVALLSVLSACGDLGAVDLG 221
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + + G + + A+++MYV LG ++ + ++F+ + ++++VTW +I G
Sbjct: 222 EWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALH 281
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +F M NV P+++T LA+L A G
Sbjct: 282 GLGLEAIEMFRRMEMENVA---------------------PNDVTFLAILSACSHVGLTD 320
Query: 208 NCQ-----LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
+ ++ Y K+ + C++D + G + A L +D+ + N W
Sbjct: 321 LGRWYFKIMVSQYRIKQRVEHY-----GCMVDLLGRAGYLMEAQDLVQDMPF-KANAAIW 374
Query: 263 TSIISGFAMHG---MGKAAV 279
++++ HG +GK A+
Sbjct: 375 GALLAAARTHGDAELGKQAL 394
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 236/436 (54%), Gaps = 46/436 (10%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
L SL+ + +NT++ Y+ + P+ A L+ ++Q +S + P D FT+ L
Sbjct: 168 LFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ------NSGILP--DEFTFVALF 219
Query: 76 RTCVTLSYPNLGTQLHAVISK--VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL-PER 132
C L+ PN+G Q+HA + K S++ + +A+V+MY G + + ++F + +
Sbjct: 220 SVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSK 279
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------- 184
+ W+ M+ G + GE+ AR LF M R+V+SWT ++ GY++ + + A
Sbjct: 280 SAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEME 339
Query: 185 --STEPSEITILAVLPAIWQNGAVR-NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+P E+T++AVL A + GA +L H Y E FN I ++ ++D YAKCG
Sbjct: 340 ALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI-LTAAVMDMYAKCGS 398
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I SAL++F + K + S+I+G A HG+G+ A+ F + GLKP+ VTF+ VL
Sbjct: 399 IDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVL 458
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
AC H GL HYGC+VD+LGR G LE+A + +P E
Sbjct: 459 CACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE-A 517
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ V+ R LL AC HGNV++GE +K+LEME +G YVL+ NILA ++ +A ++R+
Sbjct: 518 NSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRK 577
Query: 400 VMDERNALKFPGRSLV 415
VM++ K PG S +
Sbjct: 578 VMEDHGIRKPPGWSYI 593
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 196/432 (45%), Gaps = 85/432 (19%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
HS LL + + ++NT++ YS +D+P++A +LY + I P ++FT+
Sbjct: 62 HSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLY--MSMIAKGIAPP-----NNFTF 114
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
FL+ +C LS G ++H+ I K GF+S ++V AL+++Y G L + LFDE
Sbjct: 115 PFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLV 174
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
R+LV++N MI G + + E A LF EM +N +GIL P E
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEM--QN----SGIL---------------PDEF 213
Query: 192 TILAVLPAIWQNGAVRNCQLIHG--YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
T +A+ + IH Y R ++ +I + + ++D YAKCG I A ++F
Sbjct: 214 TFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDS-NILLKSAIVDMYAKCGLINIAERVF 272
Query: 250 E----------------------DISVERK--------NLVSWTSIISGFAMHGMGKAAV 279
+I+V RK +++SWT++ISG++ G A+
Sbjct: 273 STMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEAL 332
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG---------------------CLVDM 317
E F+ M+ +G+KP+ VT ++VL+AC+ G G ++DM
Sbjct: 333 ELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 392
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
+ G ++ A +I + + V ++ + HG E V R+++ G D
Sbjct: 393 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELIST--GLKPD 450
Query: 378 YVLMYNILAGVG 389
V +L G
Sbjct: 451 EVTFVGVLCACG 462
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLP 198
L+++R LF ++ C N+ W ++ GY+R + A P+ T +L
Sbjct: 60 LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLN 119
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
+ + ++ +H + K GF + D+ V N LI Y+ G + A LF++ V ++
Sbjct: 120 SCARLSSLEPGHEVHSHIIKHGFES-DLFVRNALIHLYSVFGNLNLARTLFDESLV--RD 176
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
LVS+ ++I G+A ++A+ F MQ G+ P+ TF+++ + CS
Sbjct: 177 LVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCS 223
>gi|147777522|emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
Length = 513
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 211/395 (53%), Gaps = 36/395 (9%)
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
++ H H+ P D+F + +++C PNLG +HA ++K S+ +V ALV+M
Sbjct: 32 SLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIHAHVTKFSLVSNPFVACALVDM 91
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGI 171
Y + + LFDE+P RN+V WN MI+ G + A LFE M N ++ I
Sbjct: 92 YGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAI 151
Query: 172 LDGYTRMN-----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
+ G + + R + + IT+LA+LPA A+ + IHGY + G
Sbjct: 152 ISGLSGLEDGSFKALSFYRRMGEVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNG 211
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ + +CL++ Y +CGCI ++ +F+ IS+ +++V+W+S+IS +A+HG + A+E
Sbjct: 212 IDPHP-HLRSCLVEAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALE 270
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
FE+M+ ++P+ +TFL VL ACSH GL HY C+VD L
Sbjct: 271 TFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDAL 330
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
RAGRL +A +I G+P + T LLGAC +G VE+ E R + E+E N +Y
Sbjct: 331 SRAGRLYEAYEIIQGMPVKAT-AKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANY 389
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
VL+ I A VGR+ +A+R+RR M+E PG S
Sbjct: 390 VLLARIYASVGRHEEAQRMRREMNEMGVKAAPGSS 424
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 236/441 (53%), Gaps = 47/441 (10%)
Query: 11 IHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS 68
+HS+ S LH + + L+ Y+L +A Y +++ SP+ S
Sbjct: 58 LHSYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRK---RRVSPI-----S 109
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
FT+S L C + + LG QLHA + GF S +YVN A+++MYV G L+ + +FD
Sbjct: 110 FTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFD 169
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---------- 177
E+PER++++W +I + G++ AR LF+ +P +++V+WT ++ GY +
Sbjct: 170 EMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEV 229
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTY 236
R E E+T++ V+ A Q GA + I E GF D + V + LID Y
Sbjct: 230 FRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMY 289
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+KCG + A +F+ + +N+ S++S+I GFA+HG +AA++ F M + G+KPN VT
Sbjct: 290 SKCGNVEEAYDVFK--GMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVT 347
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL ACSH GL Y C+ D+L RAG LE+A ++ +
Sbjct: 348 FVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETM 407
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E +D V LLGA HGN ++ E ++++ E+E N G+Y+L+ N A GR+ D
Sbjct: 408 PME-SDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDV 466
Query: 395 ERLRRVMDERNALKFPGRSLV 415
++R+++ E+N K PG S V
Sbjct: 467 SKVRKLLREKNLKKNPGWSWV 487
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 160/502 (31%), Positives = 247/502 (49%), Gaps = 105/502 (20%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
+TR HL S T L N+++ + + AF LYK L++ + P D
Sbjct: 49 STRHARHLFDNRSHRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRR-----ETCFVP--D 101
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
+FT++ L + C G + H + K+GF +YV+TALV+MY G L + K+F+
Sbjct: 102 NFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFN 161
Query: 128 ELPERNLVTW-------------------------------NVMITGLVKWGELEYARSL 156
++P+R+LV+W N++I G VK G++E ARSL
Sbjct: 162 DMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSL 221
Query: 157 FEEMPCRNVVSWTGILDGYT---------------------------------------- 176
F+EMP RNV+SWT ++ GY
Sbjct: 222 FDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEAL 281
Query: 177 RMNRSNGAST--EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
++ R +ST EP+E+T++++LPAI GA+ + +H + +++ +A + V L+D
Sbjct: 282 KLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDA-AVNVCTSLVD 340
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y KCG I A K+F +I +K +W ++I+GFAM+G+ A+E F MQ+ G+KPN
Sbjct: 341 MYLKCGEISKARKVFSEIP--KKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPND 398
Query: 295 VTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALG 333
+T VL+ACSHGGL HYGCLVD+LGRAG L++AE +
Sbjct: 399 ITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKS 458
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P E +++ AC F +V +RV + + ME GN G YV+M N+ A R+ D
Sbjct: 459 MPFEANGIILSSFSF-ACGFSNDVTRAQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKD 517
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+ + +M R A K G S +
Sbjct: 518 VKEINGLMRRRGAKKEVGSSAI 539
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
FL++ C T Q+HA+I + ++V + T + L + + LFD R
Sbjct: 7 FLLQRCRTRKTL---LQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNRSHR 63
Query: 133 -NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
+ N MI V +L A +L++++ + D +T
Sbjct: 64 GDTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCF----VPDNFT--------------F 105
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+LA A+ AV HG+ K GF FD+ VS L+D YAK G + A K+F D
Sbjct: 106 TVLAKCCAL--RMAVWEGLETHGHVVKIGF-CFDMYVSTALVDMYAKFGNLGLARKVFND 162
Query: 252 ISVERKNLVSWTSIISGFAMHG-MGKA 277
+ ++LVSWT++I G+ G MG A
Sbjct: 163 MP--DRSLVSWTALIGGYVRRGDMGNA 187
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 220/397 (55%), Gaps = 52/397 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+ +++ C S G Q+H +I K GF +V + LV MYV ++D+ LF
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180
Query: 127 D------------ELPER----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
EL +R N+V WN+MI G V+ G+++ A++LF+EMP R+VVSW
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNV 240
Query: 171 ILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ GY + ++ +P+ +T+++VLPAI + GA+ + IH Y K
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK 300
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
D+ + + L+D Y+KCG I AL++FE ++ ++N ++W++II FAMHG + A+
Sbjct: 301 IEIDDV-LGSALVDMYSKCGSIDEALQVFE--TLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
+F M K G+ PN V ++ +L+ACSH GL HYGC+VD+L
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRAG LE+AE++ +P E D V+ + LLGAC H N++MGERV ++E+ + G Y
Sbjct: 418 GRAGHLEEAEELIRNMPIEPDD-VIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSY 476
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V + N+ A +G + R+R M + K PG S +
Sbjct: 477 VALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWI 513
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 114/291 (39%), Gaps = 85/291 (29%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS--------------TEPSEITIL 194
+++YAR++F +MP N W IL N + S +P+ T
Sbjct: 67 DIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS------------------------- 229
+VL A + +R + IHG K GF+ + +S
Sbjct: 127 SVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVD 186
Query: 230 ---------------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
N +ID + G I SA LF+++ ++++VSW +ISG
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--QRSVVSWNVMISG 244
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------- 312
+A +G A+ F+ MQ + PN VT +SVL A + G L G
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEID 304
Query: 313 -----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
LVDM + G +++A ++ +P + + ++GA + HG E
Sbjct: 305 DVLGSALVDMYSKCGSIDEALQVFETLPKR--NAITWSAIIGAFAMHGRAE 353
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 231/426 (54%), Gaps = 55/426 (12%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+H L L +LFN + Y+ ++SP AF L+ +L S L P D +T+
Sbjct: 82 HAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLC------SGLLP--DDYTF 133
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
S L++ C + G LH K+G ++Y+ L+NMY + + +FDE+ +
Sbjct: 134 SSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQ 193
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
+V++N +ITG + + A SLF E+ N+ EP+++
Sbjct: 194 PCIVSYNAIITGYARSSQPNEALSLFRELQASNI---------------------EPTDV 232
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+L+V+ + GA+ + IH Y +K+GF+ + ++V+ LID +AKCG + A+ +FE
Sbjct: 233 TMLSVIMSCALLGALDLGKWIHEYVKKKGFDKY-VKVNTALIDMFAKCGSLTDAISIFEG 291
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ V ++ +W+++I FA HG G A+ FE M++ G++P+ +TFL +L ACSH GL
Sbjct: 292 MRV--RDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVE 349
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAG L++A + + T ++ R LL
Sbjct: 350 QGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPIL-WRTLLS 408
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
ACS HGNVEM +RV ++ E++ +GGDYV++ N+ A VGR+ D LR++M +R +K
Sbjct: 409 ACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKV 468
Query: 410 PGRSLV 415
PG S V
Sbjct: 469 PGCSSV 474
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 220/397 (55%), Gaps = 52/397 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+ +++ C S G Q+H +I K GF +V + LV MYV ++D+ LF
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180
Query: 127 D------------ELPER----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
EL +R N+V WN+MI G V+ G+++ A++LF+EMP R+VVSW
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNV 240
Query: 171 ILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ GY + ++ +P+ +T+++VLPAI + GA+ + IH Y K
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK 300
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
D+ + + L+D Y+KCG I AL++FE ++ ++N ++W++II FAMHG + A+
Sbjct: 301 VEIDDV-LGSALVDMYSKCGSIDKALQVFE--TLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
+F M K G+ PN V ++ +L+ACSH GL HYGC+VD+L
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRAG LE+AE++ +P E D V+ + LLGAC H N++MGERV ++E+ + G Y
Sbjct: 418 GRAGHLEEAEELIRNMPIEPDD-VIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSY 476
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V + N+ A +G + R+R M + K PG S +
Sbjct: 477 VALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWI 513
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 113/291 (38%), Gaps = 85/291 (29%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS--------------TEPSEITIL 194
+++YAR++F +MP N W IL N + S +P+ T
Sbjct: 67 DIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS------------------------- 229
+VL A + +R + IHG K GF+ + +S
Sbjct: 127 SVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVD 186
Query: 230 ---------------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
N +ID + G I SA LF+++ +++VSW +ISG
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--PRSVVSWNVMISG 244
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------- 312
+A +G A+ F+ MQ + PN VT +SVL A + G L G
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEID 304
Query: 313 -----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
LVDM + G +++A ++ +P + + ++GA + HG E
Sbjct: 305 DVLGSALVDMYSKCGSIDKALQVFETLPKR--NAITWSAIIGAFAMHGRAE 353
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 235/454 (51%), Gaps = 75/454 (16%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ S + +P K LLY Q++ + ++P D FT+SFL++ C L +
Sbjct: 79 FMWNTMMRGSSQSKNPSKVVLLYTQME------NRGVKP--DKFTFSFLLKGCTRLEWRK 130
Query: 86 LGTQLHAVISKVGFQSHVYVN-------------------------------TALVNMYV 114
G +H + K GF+ + +V +AL Y
Sbjct: 131 TGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYA 190
Query: 115 SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
G L + ++FDE+P ++LV+WNVMITG VK GE+E AR+LF+E P ++VV+W ++ G
Sbjct: 191 RRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAG 250
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
Y A P E+T+L++L A G ++ + +H +
Sbjct: 251 YVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDL 310
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ + N L+D YAKCG I AL++F+ + K++ +W S+I G A HG + +++ F
Sbjct: 311 SVLLGNALVDMYAKCGSIEIALQVFK--KMREKDVTTWNSVIGGLAFHGHAEESIKLFAE 368
Query: 285 MQKV-GLKPNRVTFLSVLNACSHGG----------------------LHYGCLVDMLGRA 321
MQ + +KPN +TF+ V+ ACSH G +H+GC+VD+LGRA
Sbjct: 369 MQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRA 428
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G L +A ++ + E + ++ R LLGAC HGNVE+G ++L++ R GDYVL+
Sbjct: 429 GLLSEAFELIAKMEIE-PNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLL 487
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A G + AE +R++MD+ K GRSL+
Sbjct: 488 SNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLI 521
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 228/422 (54%), Gaps = 44/422 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+FN L+ +S P KAF Y Q+ + S + P D+ T+ FLI+ +
Sbjct: 85 FVFNVLIRCFSTGAEPSKAFGFYTQMLK------SRIWP--DNITFPFLIKASTEMECVV 136
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G Q H+ I + GFQ+ VYV +LV+MY + G + + ++F ++P R++V+W M+ G
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
K G +E AR +F+EMP RN+ +W+ +++GY + N A +E +++
Sbjct: 197 KCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVS 256
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ + GA+ + H Y K ++ + L+D Y +CG I A+++FE++
Sbjct: 257 VISSCAHLGALEFGERAHEYVVKSHMTV-NLILGTALVDMYWRCGEIEKAIRVFEELP-- 313
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K+ +SW+SII G A+HG A+ F +M ++G P +T +VL+ACSHGGL
Sbjct: 314 DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLE 373
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VDMLGRAG+L +AE L +P + + + LLGAC
Sbjct: 374 IYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVK-PNAPILGALLGACKI 432
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ N E+ ERV ++E++ + G YVL+ NI A G++ E LR +M E+ K PG S
Sbjct: 433 YKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWS 492
Query: 414 LV 415
L+
Sbjct: 493 LI 494
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 228/433 (52%), Gaps = 48/433 (11%)
Query: 21 LLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
+LHH+ L+N L+ YS P+ + QI H P + T++FL
Sbjct: 2 VLHHSSKPTLFLYNKLIQAYS--SHPQHQHRCFSLYSQIRLHGFLP-----NQHTFNFLF 54
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
C +LS +LG LH K GF+ ++ TAL++MY +G L+ + KLFDE+P R +
Sbjct: 55 SACTSLSSSSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVP 114
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------- 184
WN M+ GL ++G+++ A LF MP RNVV WT ++ GY+ + + A
Sbjct: 115 RWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEK 174
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P+ +T++++LPA A+ Q + Y K GF + SN +++ Y KCG I +
Sbjct: 175 GIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGFFK-NXYASNAVLEMYVKCGKIDA 233
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F +I R NL SW S++ G A+HG A+E +++M G P+ VTF+ +L AC
Sbjct: 234 AWRVFNEIGSLR-NLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLAC 292
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
+ GG+ HYGC+VD+LGRAG+L +A ++ + S D V
Sbjct: 293 TQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSM-SMKPDSV 351
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
+ LLGACSFHGNVE+ E + +E N G+YV++ NI A G++ +LR+VM
Sbjct: 352 IWGALLGACSFHGNVELAEIAAESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMK 411
Query: 403 ERNALKFPGRSLV 415
K G S +
Sbjct: 412 GSKITKSAGHSFI 424
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 228/454 (50%), Gaps = 74/454 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT + S + P A LY Q+ Q ++P D+FT+ F+++ C L +
Sbjct: 72 TFMWNTYIRGSSQSHDPVHAVALYAQMDQ------RSVKP--DNFTFPFVLKACTKLFWV 123
Query: 85 NLGTQLHAVISKVGFQSHVYVN-------------------------------TALVNMY 113
N G+ +H + ++GF S+V V +AL+ Y
Sbjct: 124 NTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGY 183
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
G L + KLFDE+P+R+LV+WNVMIT K GE+E AR LF+E P +++VSW ++
Sbjct: 184 AQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIG 243
Query: 174 GYT--RMNRSN--------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
GY +NR G P E+T+L++L A G + + + +H +
Sbjct: 244 GYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGK 303
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
+ N L+D YAKCG I A+++F + K++VSW S+ISG A HG + ++ F
Sbjct: 304 LSTLLGNALVDMYAKCGNIGKAVRVF--WLIRDKDVVSWNSVISGLAFHGHAEESLGLFR 361
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGG----------------------LHYGCLVDMLGRA 321
M+ + P+ VTF+ VL ACSH G H GC+VDMLGRA
Sbjct: 362 EMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRA 421
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G L++A + E + +V R LLGAC HG+VE+ +R ++L M GDYVL+
Sbjct: 422 GLLKEAFNFIASMKIE-PNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLL 480
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ A G + AE +R++MD+ K G S V
Sbjct: 481 SNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFV 514
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 60/341 (17%)
Query: 85 NLGT--QLHAVI------SKVGFQSHVYVNTAL--VNMYVSLGFLKDSSKLFDELPERNL 134
N+GT Q+HA++ S VGF + + TA+ V + ++ + ++F ++P+ +
Sbjct: 13 NVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDT 72
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
WN I G + + +A +L+ +M R+V +P T
Sbjct: 73 FMWNTYIRGSSQSHDPVHAVALYAQMDQRSV---------------------KPDNFTFP 111
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
VL A + V +HG + GF + ++ V N L+ +AKCG + A +F+D
Sbjct: 112 FVLKACTKLFWVNTGSAVHGRVLRLGFGS-NVVVRNTLLVFHAKCGDLKVATDIFDD--S 168
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL---------------- 298
++ ++V+W+++I+G+A G A + F+ M K L V
Sbjct: 169 DKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFD 228
Query: 299 --SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
+ + S L G ++ L R E +G E D V LL AC+ G+
Sbjct: 229 EAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVG---ECPDEVTMLSLLSACADLGD 285
Query: 357 VEMGERVTRKVLEMERGN-----GGDYVLMYNILAGVGRYV 392
+E GE+V K++EM +G G V MY +G+ V
Sbjct: 286 LESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAV 326
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 217/380 (57%), Gaps = 37/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
SFT+S L + C +LG Q+HA I GF S +YV +++++YV GFL + K+F
Sbjct: 142 SFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVF 201
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+ ER++V+W +I K+G++E A LF+++P +++V+WT ++ GY + R A
Sbjct: 202 DEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALE 261
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDT 235
E E+T+ V+ A Q GAV++ I E+ GF + ++ V + LID
Sbjct: 262 YFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDM 321
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCG A K+FE ++ +N+ S++S+I G+AMHG +A++ F M K ++PN+V
Sbjct: 322 YSKCGSPDEAYKVFE--VMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKV 379
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ +L+ACSH GL HY C+VD+LGRAG LE+A +
Sbjct: 380 TFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT 439
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P E + V LLGAC HGN ++ + ++ ++E G+Y+L+ NI A GR+ +
Sbjct: 440 MPME-PNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEE 498
Query: 394 AERLRRVMDERNALKFPGRS 413
+LR+V+ E+ K PG S
Sbjct: 499 VSKLRKVIREKGFKKNPGCS 518
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/468 (31%), Positives = 239/468 (51%), Gaps = 71/468 (15%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H++L+ ++NTL+ + +P+ A LY ++ + +RP D T+
Sbjct: 60 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM--LRRGGGGGVRP--DKLTF 115
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-------- 123
F++R C + + G Q+HA + K G +S +V AL+ M+ S G L ++
Sbjct: 116 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 175
Query: 124 -----------------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
LFDE P ++LV+WNVMIT K G++ AR LF+++
Sbjct: 176 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 235
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
P R+VVSW ++ GY R + +P +T+L++L A +G + Q
Sbjct: 236 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 295
Query: 211 LIH-GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+H + N F + + N LID YAKCG + SA ++F S+ K++ +W SI+ G
Sbjct: 296 RLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGL 353
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A+HG +++ FE+M K ++P+ +TF++VL ACSHGG+
Sbjct: 354 ALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPN 413
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VDMLGRAG L++A + + E + V+ R LL AC HG +E+ + R++
Sbjct: 414 IKHYGCMVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQL 472
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L+ GDYVL+ NI A VG + +E++R++MD+ K G++ V
Sbjct: 473 LKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFV 520
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 140/373 (37%), Gaps = 120/373 (32%)
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSH-------VYVNTALVNMYVSLGFLKDSSKLFDE 128
R C +L + Q+HAV++ GF S ++ + V ++ +L +FD+
Sbjct: 16 RRCRSLRHIK---QMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYL-----VFDQ 67
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM-NRSNGASTE 187
+P + +N +I G A SL YTRM R G
Sbjct: 68 IPRPDRFMYNTLIRGAAHTAAPRDAVSL------------------YTRMLRRGGGGGVR 109
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P ++T VL A GA +H + K G + D V N LI +A CG + A
Sbjct: 110 PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCES-DAFVKNALIGMHASCGNLGIAAA 168
Query: 248 LFE---------------------DISVER--------KNLVSWTSIISGFAMHG-MGKA 277
LF+ DI R K+LVSW +I+ +A G M A
Sbjct: 169 LFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALA 228
Query: 278 ------------------------------AVENFERMQKVGLKPNRVTFLSVLNACSHG 307
A+E FE+MQ++G KP+ VT LS+L+AC+
Sbjct: 229 RELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADS 288
Query: 308 G-------LHYG----------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
G LH L+DM + G ++ A ++ + + DV
Sbjct: 289 GDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDK--DVSTW 346
Query: 345 RILLGACSFHGNV 357
++G + HG+V
Sbjct: 347 NSIVGGLALHGHV 359
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 217/380 (57%), Gaps = 37/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
SFT+S L + C +LG Q+HA I GF S +YV +++++YV GFL + K+F
Sbjct: 142 SFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVF 201
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+ ER++V+W +I K+G++E A LF+++P +++V+WT ++ GY + R A
Sbjct: 202 DEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALE 261
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDT 235
E E+T+ V+ A Q GAV++ I E+ GF + ++ V + LID
Sbjct: 262 YFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDM 321
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCG A K+FE ++ +N+ S++S+I G+AMHG +A++ F M K ++PN+V
Sbjct: 322 YSKCGSPDEAYKVFE--VMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKV 379
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ +L+ACSH GL HY C+VD+LGRAG LE+A +
Sbjct: 380 TFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT 439
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P E + V LLGAC HGN ++ + ++ ++E G+Y+L+ NI A GR+ +
Sbjct: 440 MPME-PNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEE 498
Query: 394 AERLRRVMDERNALKFPGRS 413
+LR+V+ E+ K PG S
Sbjct: 499 VSKLRKVIREKGFKKNPGCS 518
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/425 (34%), Positives = 239/425 (56%), Gaps = 58/425 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ S ++ P A L++ ++ + S P + FT+ + + C G
Sbjct: 56 YNTLIRALSESNDPCDALLVF--IEMVEDCSVEP-----NCFTFPSVFKACGRAERLREG 108
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF---------DELPER------ 132
Q+H + K G S +V + +V MY+S G ++D+ +LF D + ++
Sbjct: 109 RQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDG 168
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSN 182
++V WNVMI G V+ GELE AR+LF+EMP R+VVSW ++ GY +
Sbjct: 169 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 228
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
A P+ +T+++VLPA+ + GA+ + +H Y + D+ + + LID YAKCG I
Sbjct: 229 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV-LGSALIDMYAKCGSI 287
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
AL++FE + ++N+V+W++II+G AMHG K +++FE M++ G+ P+ VT++ +L+
Sbjct: 288 EKALQVFEGLP--KRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLS 345
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HYGC+VD+LGRAG LE++E++ L +P + D
Sbjct: 346 ACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD 405
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V+ + LLGAC HGNVEMG+RV ++E+ + G YV + NI A +G + ++R +
Sbjct: 406 VIW-KALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLM 464
Query: 401 MDERN 405
M E +
Sbjct: 465 MKEMD 469
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/416 (34%), Positives = 213/416 (51%), Gaps = 76/416 (18%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T F+++ C G ++H K+G S VYV+ L+ MY ++ + K+F
Sbjct: 139 DNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF 198
Query: 127 DELPERNLVTWNVMITGLVKW----------------------------------GELEY 152
D P+R+LV+W MI G VK G+ +
Sbjct: 199 DTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANF 258
Query: 153 ARSLFEEMPCRNVVSWTGILDG-------------YTRMNRSNGASTEPSEITILAVLPA 199
AR +F+EMP +NVVSW ++ G + +M R +P ++T++AVL +
Sbjct: 259 ARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQR---LGVKPDDVTLVAVLNS 315
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G + + +H Y ++ A D + N L+D YAKCG I A +F+ ++ RK++
Sbjct: 316 CANLGVLELGKWVHAYLDRNQIRA-DGFIGNALVDMYAKCGSIDQACWVFQ--AMNRKDV 372
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
S+T++I G AMHG G A++ F M K+G++P+ VTF+ VL ACSH GL
Sbjct: 373 YSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFED 432
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HYGC+VD+LGRAG + +AE+ +P E D V LLGAC HG V
Sbjct: 433 MSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIE-PDAFVLGALLGACKIHGKV 491
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
E+GE V +K+ ++E G YVLM NI + R+ DA +LR+ M ERN K PG S
Sbjct: 492 ELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCS 547
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 20/142 (14%)
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE--------------PSEITILAVL 197
YA SL ++ N+ + I+ G + SN S E P TI VL
Sbjct: 91 YALSLLAQLRTPNLPLYNAIIRG---LATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVL 147
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A ++ AVR + +HG K G A D+ VSN L+ YA C I SA K+F D S +R
Sbjct: 148 KACAESRAVREGEEVHGQAIKMGL-ASDVYVSNTLMRMYAVCDVIRSARKVF-DTSPQR- 204
Query: 258 NLVSWTSIISGFAMHGMGKAAV 279
+LVSWT++I G+ G + V
Sbjct: 205 DLVSWTTMIQGYVKMGFAREGV 226
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 231/438 (52%), Gaps = 69/438 (15%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFT 70
+HS LL TNS+L LLY + Q L ++FT
Sbjct: 99 LHSQLLPTNSIL-----------------------LLYSHMLQNSV--------LPNNFT 127
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+ L+ C + + G Q+HA + K GF +H +L++MYV+ L+++ ++F +P
Sbjct: 128 FPSLLIACRKIQH---GMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIP 184
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------ 184
+ V+W +I+G KWG ++ A ++F+ MP +N SW ++ Y + NR + A
Sbjct: 185 HPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDR 244
Query: 185 -----STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+ + +L A GA+ + IH Y ++ G D +++ ++D Y KC
Sbjct: 245 MKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIE-LDSKLTTAIVDMYCKC 303
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
GC+ AL++F + + + + SW +I G AMHG G+AA++ F+ M++ + P+ +TFL+
Sbjct: 304 GCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLN 363
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
+L AC+H GL H+GC+VD+LGRAG + +A K+ +P
Sbjct: 364 LLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVS 423
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
DV V LLGAC H N+E+GE + R+V+E+E N G YVL+ N+ A G++ DA ++
Sbjct: 424 -PDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKV 482
Query: 398 RRVMDERNALKFPGRSLV 415
R++MD+R K PG S++
Sbjct: 483 RKLMDDRGVKKAPGFSMI 500
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 139/358 (38%), Gaps = 85/358 (23%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYV---SLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q H+ I ++G SH ++ L+N + L + KLFD +P+ + +N +I G +
Sbjct: 40 QYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFL 99
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
++ IL Y+ M ++ S P+ T ++L A +
Sbjct: 100 H----------------SQLLPTNSILLLYSHMLQN---SVLPNNFTFPSLLIACRK--- 137
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+++ IH + K GF A + + N LI Y + A ++F ++ + VSWTS+
Sbjct: 138 IQHGMQIHAHLFKFGFGAHSVCL-NSLIHMYVTFQALEEARRVFH--TIPHPDSVSWTSL 194
Query: 266 ISGFAMHGMGKAAVENFERMQKVG-----------LKPNR-------------------- 294
ISG++ G+ A F+ M + ++ NR
Sbjct: 195 ISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLD 254
Query: 295 -VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
++L+AC+ G L G +VDM + G LE+A ++
Sbjct: 255 KFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFH 314
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN-GGDYVLMYNILAGVG 389
+P + ++G + HGN GE + EMER D + N+L
Sbjct: 315 SLPLPCRWISSWNCMIGGLAMHGN---GEAAIQLFKEMERQRVAPDDITFLNLLTACA 369
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 232/431 (53%), Gaps = 53/431 (12%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+ ++ Y+ A LLY+ + + RP + F Y ++++C + P
Sbjct: 121 LYTAMITAYASHSDHTSALLLYRNMVR-------RRRPWPNHFIYPHVLKSCTQVVGPGS 173
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL-FDELPERNLVTWNVMITGLV 145
+H + + GF+ + V TAL++ Y+ +S++L FDE+ ERN+V+W MI+G
Sbjct: 174 ARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYT 233
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYT-------------RM----NRSNGASTEP 188
+ G++ A LFEEMP R+V SW ++ GYT RM + G P
Sbjct: 234 RLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRP 293
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+++T + L A G +R + IHGY + G D VSN L+D Y KCGC+ A ++
Sbjct: 294 NQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGL-GLDSFVSNALVDMYGKCGCLKEARRV 352
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNACSH 306
F D ++ER +L SW S+I+ A+HG + A+ FE M G+KP+ VTF+ +LNAC+H
Sbjct: 353 F-DRTLER-SLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTH 410
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GGL HYGCLVD+LGRAG+ E+A ++ G+ E D V+
Sbjct: 411 GGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIE-PDEVIW 469
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LL C HG+ ++ E +K+++M+ NGG +++ NI +G++ + ++R+V+ E+
Sbjct: 470 GSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQ 529
Query: 405 NALKFPGRSLV 415
NA K PG S +
Sbjct: 530 NAHKTPGCSWI 540
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 59/304 (19%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L+ C+ L++ QL A + +G Q+H Y L ++L L + +FD +
Sbjct: 61 LLERCIHLNHLK---QLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIFDHVESP 117
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEM-----PCRNVVSWTGILDGYTRMNRSNGAST- 186
N+ + MIT + A L+ M P N + +L T++ A
Sbjct: 118 NVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMV 177
Query: 187 ---------EPSEITILAVLPA---IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
E + A+L A W + V + +L+ +R ++ +I
Sbjct: 178 HCQVLRSGFEQYPVVQTALLDAYLRFWSD--VESARLLFDEMTERNVVSW-----TAMIS 230
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV------ 288
Y + G I +A+ LFE++ +++ SW ++I+G+ +G+ A+ F RM V
Sbjct: 231 GYTRLGQIGNAVLLFEEMP--ERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWG 288
Query: 289 -GLKPNRVTFLSVLNACSHGG-LHYG--------------------CLVDMLGRAGRLEQ 326
G +PN+VT + L+AC H G L G LVDM G+ G L++
Sbjct: 289 QGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKE 348
Query: 327 AEKI 330
A ++
Sbjct: 349 ARRV 352
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/468 (32%), Positives = 238/468 (50%), Gaps = 71/468 (15%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H++L+ ++NTL+ + +P+ A LY ++ + S +RP D T+
Sbjct: 60 HAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMAR--RGSCGGVRP--DKITF 115
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-------- 123
F++R C + G Q+HA + K G +S +V AL+ M+ S G L +S
Sbjct: 116 PFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRAR 175
Query: 124 -----------------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
KLFDE P ++ V+WNVMIT K GE+ AR LF +
Sbjct: 176 EDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRI 235
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
P R+VVSW ++ G+ R + +P +T+L++L A +G + +
Sbjct: 236 PERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGR 295
Query: 211 LIHG-YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+H E F + + N LID YAKCG + SAL++F + K++ +W SII G
Sbjct: 296 RLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVF--WVMRDKDVSTWNSIIGGL 353
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A+HG +++ F++M K ++P+ +TF++VL ACSHGG+
Sbjct: 354 ALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPN 413
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VDMLGRAG L++A + + E + V+ R LLGAC HG +E+ E R++
Sbjct: 414 VKHYGCMVDMLGRAGLLKEAFEFIDTMKVE-PNSVIWRTLLGACRVHGEIELAEHANRQL 472
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L+ GDYVL+ NI A G + ++E++R++MD+ K GR++V
Sbjct: 473 LKARNDESGDYVLLSNIYASAGEWSESEKMRKLMDDSGVNKQAGRTVV 520
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 132/354 (37%), Gaps = 113/354 (31%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
F S V V A+ + Y+ +FD++P +L +N +I G A SL+
Sbjct: 48 FASAVAVRGAIAHAYL----------VFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYA 97
Query: 159 EMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
M R + P +IT VL A GA +H + K
Sbjct: 98 RMA-----------------RRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVK 140
Query: 219 RGFNAFDIRVSNCLIDTYAKC--------------------------GC-----IFSALK 247
G + D V N LI +A C GC I +A K
Sbjct: 141 AGCES-DAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARK 199
Query: 248 LFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMGKAA 278
LF++ V+ +++VSW ++ISG G A
Sbjct: 200 LFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYA 259
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGG-------LHYG----------------CLV 315
+E FE+MQ++G KP+ VT LS+L+AC+ G LH L+
Sbjct: 260 MELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALI 319
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
DM + G ++ A ++ + + DV ++G + HG+V V +K+L+
Sbjct: 320 DMYAKCGSMKSALQVFWVMRDK--DVSTWNSIIGGLALHGHVLESIDVFKKMLK 371
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/422 (33%), Positives = 228/422 (54%), Gaps = 48/422 (11%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+ ++H ++L ++A Y Q+ T P ++FT+S +++ C
Sbjct: 94 FFWTAIIHGHALRGLHEQALNFYAQM---LTQGVEP-----NAFTFSSILKLCPI----E 141
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G LH+ K+GF S +YV T L+++Y G + + +LFD +PE++LV+ M+T
Sbjct: 142 PGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYA 201
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILA 195
K GEL+ AR LF+ M R+ V W ++DGYT+ N A +P+E+T+L+
Sbjct: 202 KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS 261
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q GA+ + + +H Y E G F++ V L+D Y+KCG + A +F+ I +
Sbjct: 262 VLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGTALVDMYSKCGSLEDARLVFDKI--D 318
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K++V+W S+I G+AMHG + A++ F+ M ++GL P +TF+ +L+AC H G
Sbjct: 319 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 378
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+V++LGRAG +EQA ++ + E D V+ LLGAC
Sbjct: 379 IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-PDPVLWGTLLGACRL 437
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG + +GE++ +++ N G Y+L+ NI A VG + RLR +M + K PG S
Sbjct: 438 HGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 497
Query: 414 LV 415
+
Sbjct: 498 SI 499
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 124/317 (39%), Gaps = 78/317 (24%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+HAV+ + G H +N L Y SLG L S LF ++ W +I G G
Sbjct: 48 QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
E A + + +M + V EP+ T ++L +
Sbjct: 108 LHEQALNFYAQMLTQGV---------------------EPNAFTFSSILKLC----PIEP 142
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI---------------- 252
+ +H K GF++ D+ V L+D YA+ G + SA +LF+ +
Sbjct: 143 GKALHSQAVKLGFDS-DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYA 201
Query: 253 -------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
+E ++ V W +I G+ +GM A+ F RM K KPN VT LS
Sbjct: 202 KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS 261
Query: 300 VLNACSHGG--------------------LHYG-CLVDMLGRAGRLEQAEKIALGIPSEI 338
VL+AC G +H G LVDM + G LE A + I +
Sbjct: 262 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK- 320
Query: 339 TDVVVRRILLGACSFHG 355
DVV ++ + HG
Sbjct: 321 -DVVAWNSMIVGYAMHG 336
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 233/436 (53%), Gaps = 44/436 (10%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H++LL + + ++NT+L ++ P LYK + + P +++T+
Sbjct: 40 HAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLS------TGFLP--NNYTF 91
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
SFL++ C LS + G LHA ++G++++ +V L+++Y S + + +LFD
Sbjct: 92 SFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVN 151
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRS 181
R++VTW +I G K G++ AR LF+EMP +N VSW+ ++ GY ++ N
Sbjct: 152 RDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDM 211
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A P+ I+ L A GA+ + IH Y + R D + LID YAKCGC
Sbjct: 212 QIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVD-RNRMVLDRILGTALIDMYAKCGC 270
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ +A ++F+++ +++ ++TS+ISG A HG A+E F RMQ G+ PN VTF+ +L
Sbjct: 271 VETACRVFDEML--DRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLL 328
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACS GL HYGCLVD+LGRAG LE A+++ +P E
Sbjct: 329 SACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLE-P 387
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D V LL AC HG+VE+G+ + E +GG +VL+ N+ A ++ D ++R+
Sbjct: 388 DSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRK 447
Query: 400 VMDERNALKFPGRSLV 415
M+E+ K PG SL+
Sbjct: 448 GMEEKKVKKVPGCSLI 463
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 113/293 (38%), Gaps = 85/293 (29%)
Query: 100 QSHVYVNTALVNMYVS---LGFLKDSSK--------LFDELPERNLVTWNVMITGLVKWG 148
QSH+ V+ L + + + + F S++ LF LP R WN M+
Sbjct: 8 QSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKK 67
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
E SL++ M TG L P+ T +L A Q +
Sbjct: 68 EPATVLSLYKYMLS------TGFL---------------PNNYTFSFLLQACAQLSDLSF 106
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER------------ 256
L+H + G+ A+D V N L+ YA C C+ SA +LF D SV R
Sbjct: 107 GILLHAQAVRLGWEAYDF-VQNGLLHLYASCNCMDSARRLF-DGSVNRDVVTWTAVINGY 164
Query: 257 ------------------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
KN VSW+++I+G+A G+ + A+E F MQ G +PN +
Sbjct: 165 AKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIV 224
Query: 299 SVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
L AC+ G L G L+DM + G +E A ++
Sbjct: 225 GALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRV 277
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 233/436 (53%), Gaps = 44/436 (10%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H++LL + + ++NT+L ++ P LYK + + P +++T+
Sbjct: 65 HAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLS------TGFLP--NNYTF 116
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
SFL++ C LS + G LHA ++G++++ +V L+++Y S + + +LFD
Sbjct: 117 SFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVN 176
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRS 181
R++VTW +I G K G++ AR LF+EMP +N VSW+ ++ GY ++ N
Sbjct: 177 RDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDM 236
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A P+ I+ L A GA+ + IH Y + R D + LID YAKCGC
Sbjct: 237 QIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVD-RNRMVLDRILGTALIDMYAKCGC 295
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ +A ++F+++ +++ ++TS+ISG A HG A+E F RMQ G+ PN VTF+ +L
Sbjct: 296 VETACRVFDEML--DRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLL 353
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACS GL HYGCLVD+LGRAG LE A+++ +P E
Sbjct: 354 SACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLE-P 412
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D V LL AC HG+VE+G+ + E +GG +VL+ N+ A ++ D ++R+
Sbjct: 413 DSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRK 472
Query: 400 VMDERNALKFPGRSLV 415
M+E+ K PG SL+
Sbjct: 473 GMEEKKVKKVPGCSLI 488
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 115/308 (37%), Gaps = 75/308 (24%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L+ CVT+++ Q H +S F + G + + LF LP R
Sbjct: 19 LLDQCVTMAHIK-QIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRT 77
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
WN M+ E SL++ M TG L P+ T
Sbjct: 78 SFIWNTMLRAFTDKKEPATVLSLYKYMLS------TGFL---------------PNNYTF 116
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+L A Q + L+H + G+ A+D V N L+ YA C C+ SA +LF D S
Sbjct: 117 SFLLQACAQLSDLSFGILLHAQAVRLGWEAYDF-VQNGLLHLYASCNCMDSARRLF-DGS 174
Query: 254 VER------------------------------KNLVSWTSIISGFAMHGMGKAAVENFE 283
V R KN VSW+++I+G+A G+ + A+E F
Sbjct: 175 VNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFN 234
Query: 284 RMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAG 322
MQ G +PN + L AC+ G L G L+DM + G
Sbjct: 235 DMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCG 294
Query: 323 RLEQAEKI 330
+E A ++
Sbjct: 295 CVETACRV 302
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 240/428 (56%), Gaps = 48/428 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI--RTCVTL 81
+T +NTL+ YS + SP ++ L+ Q+++ + + P D FT++FL+ R+ + +
Sbjct: 305 NTFFYNTLIRGYSKSSSPSQSVQLFNQMRR------NCVDP--DGFTFTFLLKGRSRMRI 356
Query: 82 SYPNL--GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
P + ++H + K+GF H++V AL+++Y + G + ++F+E+ ++V+W+
Sbjct: 357 DLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSG 416
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPS 189
++ V+ GELE AR +F+EMP R+VVSWT ++ GY + RS A P
Sbjct: 417 LVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPD 476
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
E+ ++ V+ A G + +H Y ++ GF + + + N LID YAKCGC+ A ++F
Sbjct: 477 EVAMVIVISACTSLGDLETGFEVHRYIDENGF-GWMVSLCNALIDMYAKCGCMDLAWQVF 535
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
++ ERK+L++W S+IS A HG + A F M G++P+ VTFL++L A +H G
Sbjct: 536 NNM--ERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGW 593
Query: 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
HYGC+VDMLGRAGRLE+A K+ + DVV L
Sbjct: 594 VDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVW-GAL 652
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
L AC +G+VEMGERV +K++E++ GG Y+L+ +I GR +A LRR MD A
Sbjct: 653 LAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAK 712
Query: 408 KFPGRSLV 415
K G S V
Sbjct: 713 KTLGCSWV 720
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 225/410 (54%), Gaps = 55/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ +++P A LY+Q+ S + P D+ TY FL++ L G
Sbjct: 108 WNTMIRGYAESENPMPALELYRQMHV------SCIEP--DTHTYPFLLKAIAKLMDVREG 159
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H++ + GF+S V+V LV+MY + G + + KLF+ + ERNLVTWN +I G
Sbjct: 160 EKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALN 219
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +LF EM R V EP T++++L A + GA+
Sbjct: 220 GRPNEALTLFREMGLRGV---------------------EPDGFTMVSLLSACAELGALA 258
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ H Y K G + ++ N L+D YAKCG I A K+F+++ E K++VSWTS+I
Sbjct: 259 LGRRAHVYMVKVGLDG-NLHAGNALLDLYAKCGSIRQAHKVFDEM--EEKSVVSWTSLIV 315
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G A++G GK A+E F+ +++ GL P+ +TF+ VL ACSH G+
Sbjct: 316 GLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIV 375
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VD+LGRAG ++QA + +P + + VV R LLGAC+ HG++ +GE
Sbjct: 376 PKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQ-PNAVVWRTLLGACTIHGHLALGEVARA 434
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++L++E + GDYVL+ N+ A R+ D ++RR M K PG SLV
Sbjct: 435 QLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLV 484
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 128/281 (45%), Gaps = 63/281 (22%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
++F IR V L+ P++G Y+ L++ + + + ++F ++
Sbjct: 60 HAFSIRHGVPLTNPDMGK---------------YLIFTLLSFCSPMSY---AHQIFSQIQ 101
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
N+ TWN MI G YA S MP L+ Y +M+ S EP
Sbjct: 102 NPNIFTWNTMIRG--------YAESE-NPMPA---------LELYRQMHVS---CIEPDT 140
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T +L AI + VR + +H + GF + + V N L+ YA CG SA KLFE
Sbjct: 141 HTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESL-VFVQNTLVHMYAACGHAESAHKLFE 199
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH---- 306
++ +NLV+W S+I+G+A++G A+ F M G++P+ T +S+L+AC+
Sbjct: 200 LMA--ERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGAL 257
Query: 307 ----------------GGLHYG-CLVDMLGRAGRLEQAEKI 330
G LH G L+D+ + G + QA K+
Sbjct: 258 ALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKV 298
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 234/456 (51%), Gaps = 71/456 (15%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H++L+ ++NTL+ + +P+ A LY ++ + +RP D T+
Sbjct: 30 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM--LRRGGGGGVRP--DKLTF 85
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-------- 123
F++R C + + G Q+HA + K G +S +V AL+ M+ S G L ++
Sbjct: 86 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 145
Query: 124 -----------------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
LFDE P ++LV+WNVMIT K G++ AR LF+++
Sbjct: 146 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
P R+VVSW ++ GY R + +P +T+L++L A +G + Q
Sbjct: 206 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 265
Query: 211 LIH-GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+H + N F + + N LID YAKCG + SA ++F S+ K++ +W SI+ G
Sbjct: 266 RLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGL 323
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A+HG +++ FE+M K ++P+ +TF++VL ACSHGG+
Sbjct: 324 ALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPN 383
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VDMLGRAG L++A + + E + V+ R LL AC HG +E+ + R++
Sbjct: 384 IKHYGCMVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQL 442
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ GDYVL+ NI A VG + +E++R++MD+
Sbjct: 443 LKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDD 478
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 126/343 (36%), Gaps = 115/343 (33%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
F S V V A+ + Y+ +FD++P + +N +I G A SL
Sbjct: 18 FASAVAVRGAIAHAYL----------VFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSL-- 65
Query: 159 EMPCRNVVSWTGILDGYTRM-NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
YTRM R G P ++T VL A GA +H +
Sbjct: 66 ----------------YTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVV 109
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE---------------------DISVER 256
K G + D V N LI +A CG + A LF+ DI R
Sbjct: 110 KAGCES-DAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAAR 168
Query: 257 --------KNLVSWTSIISGFAMHG-MGKA------------------------------ 277
K+LVSW +I+ +A G M A
Sbjct: 169 DLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLH 228
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LHYG----------------CL 314
A+E FE+MQ++G KP+ VT LS+L+AC+ G LH L
Sbjct: 229 ALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNAL 288
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
+DM + G ++ A ++ + + DV ++G + HG+V
Sbjct: 289 IDMYAKCGSMKSAHEVFWSMRDK--DVSTWNSIVGGLALHGHV 329
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 203/362 (56%), Gaps = 39/362 (10%)
Query: 89 QLHAVISKVGFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+HA++ K G S VY +T+LV +Y LG L D+ K+FD +P + +V+WNV++ G+V
Sbjct: 83 QIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDGIV 142
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITIL 194
+ +L+ A +F EMP RNVVSW ++ G+ R A P E T++
Sbjct: 143 RASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMV 202
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ A+ G + + HGY +R F+ D + LI+ Y +CG + A + F SV
Sbjct: 203 GFVSAVRDMGVLGIGRCAHGYVIRREFS-LDGALGVALINMYTRCGSMGDAFRCFS--SV 259
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
KN+ WTS+I GFA HG + A+ F M+++G++PN VTFL+VLNACSHGGL
Sbjct: 260 ASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGF 319
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGCL+D+LGRAG LE+A ++A +P E +V+ LL AC
Sbjct: 320 KYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLP-EDPGLVIWSSLLAACQS 378
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGNVEM E RK+ E +G YVL+ N A G++ D +R RR M+E +K PG S
Sbjct: 379 HGNVEMAEVAARKLAHAEPRHGSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLS 438
Query: 414 LV 415
+
Sbjct: 439 WI 440
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 50/256 (19%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ + ++A L+ ++ +Y L P D T + + +G
Sbjct: 165 WNTVIAGFVRHGWVQEAVDLFAEMTVVYG-----LAP--DEATMVGFVSAVRDMGVLGIG 217
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
H + + F + AL+NMY G + D+ + F + +N+ W +I G
Sbjct: 218 RCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFAAH 277
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A LF EM R G EP+ +T LAVL A G V
Sbjct: 278 GHPEMALRLFTEM-------------------RQLG--IEPNGVTFLAVLNACSHGGLV- 315
Query: 208 NCQLIHGYGEKRGFNAFDIRVS----------NCLIDTYAKCGCIFSALKLFEDISVERK 257
GF F++ S CLID + G + A +L + E
Sbjct: 316 ----------NEGFKYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLP-EDP 364
Query: 258 NLVSWTSIISGFAMHG 273
LV W+S+++ HG
Sbjct: 365 GLVIWSSLLAACQSHG 380
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 234/456 (51%), Gaps = 71/456 (15%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H++L+ ++NTL+ + +P+ A LY ++ + +RP D T+
Sbjct: 30 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM--LRRGGGGGVRP--DKLTF 85
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-------- 123
F++R C + + G Q+HA + K G +S +V AL+ M+ S G L ++
Sbjct: 86 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 145
Query: 124 -----------------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
LFDE P ++LV+WNVMIT K G++ AR LF+++
Sbjct: 146 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
P R+VVSW ++ GY R + +P +T+L++L A +G + Q
Sbjct: 206 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 265
Query: 211 LIH-GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+H + N F + + N LID YAKCG + SA ++F S+ K++ +W SI+ G
Sbjct: 266 RLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGL 323
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A+HG +++ FE+M K ++P+ +TF++VL ACSHGG+
Sbjct: 324 ALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPN 383
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VDMLGRAG L++A + + E + V+ R LL AC HG +E+ + R++
Sbjct: 384 IKHYGCMVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQL 442
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ GDYVL+ NI A VG + +E++R++MD+
Sbjct: 443 LKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDD 478
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 126/343 (36%), Gaps = 115/343 (33%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
F S V V A+ + Y+ +FD++P + +N +I G A SL
Sbjct: 18 FASAVAVRGAIAHAYL----------VFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSL-- 65
Query: 159 EMPCRNVVSWTGILDGYTRM-NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
YTRM R G P ++T VL A GA +H +
Sbjct: 66 ----------------YTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVV 109
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE---------------------DISVER 256
K G + D V N LI +A CG + A LF+ DI R
Sbjct: 110 KAGCES-DAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAAR 168
Query: 257 --------KNLVSWTSIISGFAMHG-MGKA------------------------------ 277
K+LVSW +I+ +A G M A
Sbjct: 169 DLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLH 228
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LHYG----------------CL 314
A+E FE+MQ++G KP+ VT LS+L+AC+ G LH L
Sbjct: 229 ALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNAL 288
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
+DM + G ++ A ++ + + DV ++G + HG+V
Sbjct: 289 IDMYAKCGSMKSAHEVFWSMRDK--DVSTWNSIVGGLALHGHV 329
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 234/456 (51%), Gaps = 71/456 (15%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H++L+ ++NTL+ + +P+ A LY ++ + +RP D T+
Sbjct: 30 HAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRM--LRRGGGGGVRP--DKLTF 85
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-------- 123
F++R C + + G Q+HA + K G +S +V AL+ M+ S G L ++
Sbjct: 86 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 145
Query: 124 -----------------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
LFDE P ++LV+WNVMIT K G++ AR LF+++
Sbjct: 146 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
P R+VVSW ++ GY R + +P +T+L++L A +G + Q
Sbjct: 206 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 265
Query: 211 LIH-GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+H + N F + + N LID YAKCG + SA ++F S+ K++ +W SI+ G
Sbjct: 266 RLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGL 323
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A+HG +++ FE+M K ++P+ +TF++VL ACSHGG+
Sbjct: 324 ALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPN 383
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VDMLGRAG L++A + + E + V+ R LL AC HG +E+ + R++
Sbjct: 384 IKHYGCIVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQL 442
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ GDYVL+ NI A VG + +E++R++MD+
Sbjct: 443 LKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDD 478
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 126/343 (36%), Gaps = 115/343 (33%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
F S V V A+ + Y+ +FD++P + +N +I G A SL
Sbjct: 18 FASAVAVRGAIAHAYL----------VFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSL-- 65
Query: 159 EMPCRNVVSWTGILDGYTRM-NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
YTRM R G P ++T VL A GA +H +
Sbjct: 66 ----------------YTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVV 109
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE---------------------DISVER 256
K G + D V N LI +A CG + A LF+ DI R
Sbjct: 110 KAGCES-DAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAAR 168
Query: 257 --------KNLVSWTSIISGFAMHG-MGKA------------------------------ 277
K+LVSW +I+ +A G M A
Sbjct: 169 DLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLH 228
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LHYG----------------CL 314
A+E FE+MQ++G KP+ VT LS+L+AC+ G LH L
Sbjct: 229 ALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNAL 288
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
+DM + G ++ A ++ + + DV ++G + HG+V
Sbjct: 289 IDMYAKCGSMKSAHEVFWSMRDK--DVSTWNSIVGGLALHGHV 329
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/425 (33%), Positives = 233/425 (54%), Gaps = 44/425 (10%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T ++N ++ YS +D P+ AFL Y+Q+ S P +S+T+ FL+R C L
Sbjct: 52 NTFMWNAIIRAYSNSDEPELAFLSYQQM----LSSSVP----HNSYTFPFLLRACRNLLA 103
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
Q+H ++ K+GF S V+ AL+++Y G + + +LFD +PER+ V+WN+MI G
Sbjct: 104 MGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDG 163
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS----------NGASTEPSEITI 193
+K G+++ A +F +MP +NVVSWT ++ G +S A E + I
Sbjct: 164 YIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAI 223
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC-LIDTYAKCGCIFSALKLFEDI 252
++L A GA+ + +H Y G + RV C L++ Y KCG + AL +F +
Sbjct: 224 ASLLTACANLGALDQGRWLHFYVLNNGVDV--DRVIGCALVNMYVKCGDMEEALSVFGKL 281
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+K++ WT++I GFA+HG G A+E F RM++ G++PN +TF +VL ACS+GGL
Sbjct: 282 KGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEE 341
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC+VD+LGR+GRL++A+++ +P + + V+ LL A
Sbjct: 342 GKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPS-AVIWGALLKA 400
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C H + +G +V ++E++ + G Y+ + ILA G++ +A +R M P
Sbjct: 401 CWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISP 460
Query: 411 GRSLV 415
G+S V
Sbjct: 461 GKSSV 465
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 111/288 (38%), Gaps = 62/288 (21%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
G+L YA+ +F + N W I+ Y+ + +S + T +L
Sbjct: 36 GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI----- 252
A A+ +HG K GF + D+ N L+ YA CG I A +LF++I
Sbjct: 96 RACRNLLAMGEALQVHGLVIKLGFGS-DVFALNALLHVYALCGEIHCARQLFDNIPERDA 154
Query: 253 ------------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
+ KN+VSWTS+ISG G A+ MQ
Sbjct: 155 VSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNA 214
Query: 289 GLKPNRVTFLSVLNACSHGG-------LHY-------------GC-LVDMLGRAGRLEQA 327
G + + V S+L AC++ G LH+ GC LV+M + G +E+A
Sbjct: 215 GFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEA 274
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHG-NVEMGERVTRKVLEMERGN 374
+ + DV + ++ + HG VE E R E R N
Sbjct: 275 LSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPN 322
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 240/428 (56%), Gaps = 48/428 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI--RTCVTL 81
+T +NTL+ YS + SP ++ L+ Q+++ + + P D FT++FL+ R+ + +
Sbjct: 246 NTFFYNTLIRGYSKSSSPSQSVQLFNQMRR------NCVDP--DGFTFTFLLKGRSRMRI 297
Query: 82 SYPNL--GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
P + ++H + K+GF H++V AL+++Y + G + ++F+E+ ++V+W+
Sbjct: 298 DLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSG 357
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPS 189
++ V+ GELE AR +F EMP R+VVSWT ++ GY + RS A P
Sbjct: 358 LVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPD 417
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
E+ +++V+ A G + +H Y ++ GF + + + N LID YAKCGC+ A ++F
Sbjct: 418 EVAMVSVISACTSLGDLETGFEVHRYIDENGF-GWMVSLCNALIDMYAKCGCMDLAWQVF 476
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
++ ERK+L++W S+IS A HG + A F M G++P+ VTFL++L A +H G
Sbjct: 477 NNM--ERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGW 534
Query: 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
HYGC+VDMLGRAGRLE+A K+ + D VV L
Sbjct: 535 VDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCND-VVWGAL 593
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
L AC +G+VEMGERV +K++E++ GG Y+L+ +I GR +A LRR MD A
Sbjct: 594 LAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAK 653
Query: 408 KFPGRSLV 415
K G S V
Sbjct: 654 KTLGCSWV 661
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 236/437 (54%), Gaps = 61/437 (13%)
Query: 28 FNTLLHFYSLADSPKKAF---LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+NT++ +S +D K L Y+ + + P R FT+ +++ C
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVE---PNR-----FTFPSVLKACAKTGKI 144
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERNLVT------- 136
G Q+H + K GF +V + LV MYV GF+KD+ LF + E+++V
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 137 ------WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNR 180
WNVMI G ++ G+ + AR LF++M R+VVSW ++ GY+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P+ +T+++VLPAI + G++ + +H Y E G D+ + + LID Y+KCG
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCG 323
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
I A+ +FE + R+N+++W+++I+GFA+HG A++ F +M++ G++P+ V ++++
Sbjct: 324 IIEKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381
Query: 301 LNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
L ACSHGGL HYGC+VD+LGR+G L++AE+ L +P +
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
DV+ + LLGAC GNVEMG+RV +++M + G YV + N+ A G + + +R
Sbjct: 442 DDVIW-KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMR 500
Query: 399 RVMDERNALKFPGRSLV 415
M E++ K PG SL+
Sbjct: 501 LRMKEKDIRKDPGCSLI 517
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 116/285 (40%), Gaps = 80/285 (28%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-------------ASTEPSEITILA 195
+L+YA +F +MP RN SW I+ G++ + EP+ T +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A + G ++ + IHG K GF + +SN L+ Y CG + A LF +E
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSN-LVRMYVMCGFMKDARVLFYKNIIE 192
Query: 256 R-------------------------------------------KNLVSWTSIISGFAMH 272
+ +++VSW ++ISG++++
Sbjct: 193 KDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLN 252
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------------------- 312
G K AVE F M+K ++PN VT +SVL A S G L G
Sbjct: 253 GFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG 312
Query: 313 -CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G +E+A + +P E +V+ ++ + HG
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRE--NVITWSAMINGFAIHGQ 355
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 233/425 (54%), Gaps = 52/425 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT++ + + +AF LYK + + S P ++FT+SF+IR C+ +
Sbjct: 77 TFIWNTMMQAFVEKNEAVRAFSLYKHMLE------SNYLP--NNFTFSFVIRACIDVFNL 128
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+G H + K G++S+ +V L+++Y + GF+ + +FD +R++VTW +I+G
Sbjct: 129 QMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGY 188
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI------------- 191
+ G++ AR LF+ MP +N VSW ++ GY R+ G E E+
Sbjct: 189 LNSGQVLIARELFDRMPEKNPVSWGALIAGYVRI----GFFKEALEVFYDMQVSGFRLNR 244
Query: 192 -TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+I+ L A GA+ + IH Y KR + D + LID YAKCGCI A +F+
Sbjct: 245 ASIVGALTACAFLGALDQGRWIHAY-VKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFD 303
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ + +++ ++T +ISG A H +AA++ F RMQ G+ PN VTF+ VLNACS G+
Sbjct: 304 EM--DDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMV 361
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGCLVD+LGRAG++E+A+++ +P + D LL
Sbjct: 362 DEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQ-PDSYTLGALL 420
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
AC HG+V++GE + +++ +GG +VL+ N+ A ++ DA ++R+ M+++N K
Sbjct: 421 DACRVHGDVQLGEEMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRK 480
Query: 409 FPGRS 413
PG S
Sbjct: 481 LPGCS 485
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 222/422 (52%), Gaps = 47/422 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ L+ Y P KAF ++ L HS LRP DSF + C + G
Sbjct: 71 WTCLISLYLHTSQPCKAFSIFSHL------FHSGLRP--DSFCVVGAVSACGHRKDLSNG 122
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H ++ + S V AL++MY G ++ + +F + +++ +W ++ G +K
Sbjct: 123 RIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKC 182
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSNGASTEPSEITILA 195
++E AR +F+EMP RN VSWT ++ GY + R+ G P+ ITI+A
Sbjct: 183 NDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDW-PTVITIVA 241
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL GA +HGY K + D+ V+N L+D YAK G + ALK+F+++
Sbjct: 242 VLSGCADIGAFDLGSSVHGYVNKTNLD-LDVTVNNALMDMYAKSGALVLALKIFQEMP-- 298
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++++ SWT++ISG A+HG G A+E F M K G+ PN VT LSVL+ACSH GL
Sbjct: 299 KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRS 358
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGRAG L +A+++ +P + D V+ R LL AC
Sbjct: 359 LFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIK-PDSVIWRSLLSACLV 417
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN+ + E + ++E+E + G Y+L++NI R+ DA + R+ M +R K PG S
Sbjct: 418 HGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCS 477
Query: 414 LV 415
V
Sbjct: 478 WV 479
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 129/340 (37%), Gaps = 80/340 (23%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGF--QSHVYVNTALVNMYVSLGFLKDSSKLFD 127
T+ FL++ C +L Q+H +G ++ L+N Y LG D+ K+F+
Sbjct: 5 TFYFLLQKCGSLEKLK---QIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFN 61
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ ++V+W +I+ L PC+ ++ + R
Sbjct: 62 HIQNPDIVSWTCLIS-----------LYLHTSQPCKAFSIFSHLFHSGLR---------- 100
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P ++ + A + N +++HG + + D V N LID Y++ G I A
Sbjct: 101 PDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGS-DPIVGNALIDMYSRSGAIEVACS 159
Query: 248 LFE---------------------DISVER--------KNLVSWTSIISGFAMHGMGKAA 278
+F+ DI R +N VSWT++I+G+ +
Sbjct: 160 VFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPG 219
Query: 279 VENFERMQKVGLK-PNRVTFLSVLNACSH-GGLHYG--------------------CLVD 316
+E F+ M+ G P +T ++VL+ C+ G G L+D
Sbjct: 220 LELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMD 279
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
M ++G L A KI +P DV ++ + HG
Sbjct: 280 MYAKSGALVLALKIFQEMPKR--DVFSWTTMISGLALHGK 317
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNC-LIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
G++ + IHG G + C L++TY + G A K+F I + ++VSW
Sbjct: 14 GSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHI--QNPDIVSW 71
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRA 321
T +IS + A F + GL+P+ + ++AC H L G +V G
Sbjct: 72 TCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVH--GMV 129
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
R E LG +D +V L+ S G +E+ V K +E++ D
Sbjct: 130 FRFE------LG-----SDPIVGNALIDMYSRSGAIEVACSVF-KTMEIK-----DVSSW 172
Query: 382 YNILAGVGRYVDAERLRRVMDE---RNALKF 409
++L G + D E RR+ DE RN++ +
Sbjct: 173 TSLLNGFIKCNDIEAARRIFDEMPMRNSVSW 203
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 221/422 (52%), Gaps = 47/422 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ L+ Y P KAF ++ L HS LRP DSF + C + G
Sbjct: 322 WTCLISLYLHTSQPCKAFSIFSHL------FHSGLRP--DSFCVVGAVSACGHRKDLSNG 373
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H ++ + S V AL++MY G ++ + +F + +++ +W ++ G +K
Sbjct: 374 RIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKC 433
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSNGASTEPSEITILA 195
++E AR +F+EMP RN VSWT ++ GY + R+ G P+ ITI+A
Sbjct: 434 NDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDW-PTVITIVA 492
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL GA +HGY K + D+ V+N L+D YAK G + ALK+F+++
Sbjct: 493 VLSGCADIGAFDLGSSVHGYVNKTNLD-LDVTVNNALMDMYAKSGALVLALKIFQEMP-- 549
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++++ SWT++ISG A+HG G A+E F M K G PN VT LSVL+ACSH GL
Sbjct: 550 KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRS 609
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGRAG L +A+++ +P + D V+ R LL AC
Sbjct: 610 LFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIK-PDSVIWRSLLSACLV 668
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN+ + E + ++E+E + G Y+L++NI R+ DA + R+ M +R K PG S
Sbjct: 669 HGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCS 728
Query: 414 LV 415
V
Sbjct: 729 WV 730
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/381 (20%), Positives = 142/381 (37%), Gaps = 90/381 (23%)
Query: 39 DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFT----------YSFLIRTCVTLSYPNLGT 88
D + ++ Y++ + + P F S+T + FL++ C +L
Sbjct: 215 DGSMRLYINYREFNKSXSTERWPSXKKFASYTNRNAHMNTQTFYFLLQKCGSLEKLK--- 271
Query: 89 QLHAVISKVGF--QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+H +G ++ L+N Y LG D+ K+F+ + ++V+W +I+
Sbjct: 272 QIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLIS---- 327
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
L PC+ ++ + R P ++ + A +
Sbjct: 328 -------LYLHTSQPCKAFSIFSHLFHSGLR----------PDSFCVVGAVSACGHRKDL 370
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE---------------- 250
N +++HG + + D V N LID Y++ G I A +F+
Sbjct: 371 SNGRIVHGMVFRFELGS-DPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNG 429
Query: 251 -----DISVER--------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVT 296
DI R +N VSWT++I+G+ + +E F+ M+ G P +T
Sbjct: 430 FIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVIT 489
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
++VL+ C+ G G L+DM ++G L A KI +P
Sbjct: 490 IVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP 549
Query: 336 SEITDVVVRRILLGACSFHGN 356
DV ++ + HG
Sbjct: 550 KR--DVFSWTTMISGLALHGK 568
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNC-LIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
G++ + IHG G + C L++TY + G A K+F I + ++VSW
Sbjct: 265 GSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHI--QNPDIVSW 322
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRA 321
T +IS + A F + GL+P+ + ++AC H L G +V G
Sbjct: 323 TCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVH--GMV 380
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
R E LG +D +V L+ S G +E+ V K +E++ D
Sbjct: 381 FRFE------LG-----SDPIVGNALIDMYSRSGAIEVACSVF-KTMEIK-----DVSSW 423
Query: 382 YNILAGVGRYVDAERLRRVMDE---RNALKF 409
++L G + D E RR+ DE RN++ +
Sbjct: 424 TSLLNGFIKCNDIEAARRIFDEMPMRNSVSW 454
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 216/386 (55%), Gaps = 41/386 (10%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D T+ FL+++ ++ P+ G QLHA I +G + +V T+L+NMY S G + +
Sbjct: 60 LPDLHTFPFLLQS---INTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQ 116
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT-------- 176
FDE+ + +L +WN +I K G + AR LF++MP +NV+SW+ ++ GY
Sbjct: 117 AFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAA 176
Query: 177 -----RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
+ G+ P+E T+ +VL A + GA+++ + +H Y +K G D+ +
Sbjct: 177 LSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMK-IDVVLGTS 235
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LID YAKCG I A +F+++ E K++++W+++I+ F+MHG+ + +E F RM G++
Sbjct: 236 LIDMYAKCGSIERAKCIFDNLGPE-KDVMAWSAMITAFSMHGLSEECLELFARMVNDGVR 294
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
PN VTF++VL AC HGGL HYGC+VD+ RAGR+E A
Sbjct: 295 PNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWN 354
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P E DV++ LL HG+VE E K+LE++ N YVL+ N+ A +G
Sbjct: 355 VVKSMPME-PDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLG 413
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
R+ + LR +M+ R K PG SLV
Sbjct: 414 RWREVRHLRDLMEVRGIKKLPGCSLV 439
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/448 (33%), Positives = 233/448 (52%), Gaps = 72/448 (16%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T +N + + +++P++A +LYK++ Q +P D++TY L + C LS
Sbjct: 114 NTFSWNVAIRGFLDSENPREAVVLYKRVLQC-----DGTKP--DNYTYPLLFKACARLSL 166
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+G+++ + +GF S ++V+ A++++ VS G L + K+FD+ R+LV+WN MI G
Sbjct: 167 IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 226
Query: 144 -------------------LVKW----------GELEYARSLFEEMPCRNVVSWTGILDG 174
+V W G L+ A LF+EMP ++VV W ++ G
Sbjct: 227 YCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGG 286
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
Y NR A + P E+T+++ L A Q GA+ IH Y EK +
Sbjct: 287 YVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SL 345
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
++ + LID YAKCG I A+++F+++ +N ++WT+IISG A+HG A+ F
Sbjct: 346 NVALGTALIDMYAKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGNAHGAIAYFSE 403
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M + P+ VTFL +L+AC HGGL HY C+VD+LGRAG
Sbjct: 404 MIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAG 463
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
LE+AE++ +P E D VV L AC HGNV MGER K+L+M+ + G YVL+
Sbjct: 464 LLEEAEELIKSMPIE-ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLA 522
Query: 383 NILAGVGRYVDAERLRRVMDERNALKFP 410
N+ + +A + R++M +R K P
Sbjct: 523 NMYGEAEMWKEAGKARKLMRQRGVEKTP 550
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 116/311 (37%), Gaps = 97/311 (31%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWT----GILDG---------YTRMNRSNGAS 185
+ + +W +L+Y ++ N SW G LD Y R+ + +G
Sbjct: 89 IAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDG-- 146
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+P T + A + +R I G+ GF++ DI VSN +I CG + A
Sbjct: 147 TKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS-DIFVSNAVIHLLVSCGDLDGA 205
Query: 246 LKLFE-----DI----------------------SVERKNLVSWTSIISGFAMHGM---- 274
K+F+ D+ S+ K +VSWT+++ G+A G+
Sbjct: 206 RKMFDKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMA 265
Query: 275 ---------------------------GKAAVENFERMQKVGLKPNRVTFLSVLNACSH- 306
GK A+ F MQ + + P+ VT +S L+ACS
Sbjct: 266 WKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQL 325
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G L G L+DM + G++ +A ++ +P + +
Sbjct: 326 GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR--NSLTWTA 383
Query: 347 LLGACSFHGNV 357
++ + HGN
Sbjct: 384 IISGLALHGNA 394
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 240/428 (56%), Gaps = 48/428 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI--RTCVTL 81
+T +NTL+ YS + SP ++ L+ Q+++ + + P D FT++FL+ R+ + +
Sbjct: 59 NTFFYNTLIRGYSKSSSPSQSVQLFNQMRR------NCVDP--DGFTFTFLLKGRSRMRI 110
Query: 82 SYPNL--GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
P + ++H + K+GF H++V AL+++Y + G + ++F+E+ ++V+W+
Sbjct: 111 DLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSG 170
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPS 189
++ V+ GELE AR +F EMP R+VVSWT ++ GY + RS A P
Sbjct: 171 LVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPD 230
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
E+ +++V+ A G + +H Y ++ GF + + + N LID YAKCGC+ A ++F
Sbjct: 231 EVAMVSVISACTSLGDLETGFEVHRYIDENGF-GWMVSLCNALIDMYAKCGCMDLAWQVF 289
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
++ ERK+L++W S+IS A HG + A F M G++P+ VTFL++L A +H G
Sbjct: 290 NNM--ERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGW 347
Query: 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
HYGC+VDMLGRAGRLE+A K+ + D VV L
Sbjct: 348 VDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCND-VVWGAL 406
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
L AC +G+VEMGERV +K++E++ GG Y+L+ +I GR +A LRR MD A
Sbjct: 407 LAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAK 466
Query: 408 KFPGRSLV 415
K G S V
Sbjct: 467 KTLGCSWV 474
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 212/385 (55%), Gaps = 36/385 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D+FT F++++C LS +G +H +VG + YV +L++MYV G + D+ K
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK 237
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS--- 181
LFD++ R++ +WN +I G +K GE+ A LFE M RN+VSWT ++ GYT+ +
Sbjct: 238 LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQA 297
Query: 182 ---------NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+G+ +P+ +TI++VLPA Q+ A+ + IH + G + + V L
Sbjct: 298 LGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH-LNSSVQTAL 356
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
YAKC + A F+ I+ KNL++W ++I+ +A HG G AV FE M + G++P
Sbjct: 357 AGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQP 416
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
+ VTF+ +L+ CSH GL HY C+VD+LGRAGRL +A+++
Sbjct: 417 DAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 476
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+P + V LL AC H N+E+ E R++ +E N G+YVL+ N+ A G
Sbjct: 477 ISQMPMQ-AGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 535
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+ + ++LR ++ + K PG S +
Sbjct: 536 WEEVKKLRALLKYQGMKKSPGCSWI 560
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 119/284 (41%), Gaps = 62/284 (21%)
Query: 62 LRPLFDSF----TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
L+P+ F +Y+ + + ++ LG Q HA I G Q + ++ +V MY S G
Sbjct: 67 LQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSG 126
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
L + +FD + + + +N +I + G E + + G D +T
Sbjct: 127 DLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLG--DNFT- 183
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGA--VRNC--QLIHGYGEKRGFNAFDIRVSNCLI 233
LP + ++ A R C + +HG G + G D V LI
Sbjct: 184 -------------------LPFVLKSCADLSRVCMGRCVHGQGLRVGLEG-DFYVGASLI 223
Query: 234 DTYAKCGCIFSALKLFEDISV-----------------------------ERKNLVSWTS 264
D Y KCG I A KLF+ + V E +N+VSWT+
Sbjct: 224 DMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTA 283
Query: 265 IISGFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSH 306
+ISG+ +G + A+ F+ M + G +KPN VT +SVL AC+
Sbjct: 284 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ 327
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 242/455 (53%), Gaps = 55/455 (12%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
+ +SNN + H+ L+ N L + ++N+++ Y L+ SP +A L Y +
Sbjct: 53 AATSNNPSFFSHACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGL---- 108
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPN--LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
L +++T+ LI+ C TL + +G +HA + GF +V +AL+ Y SL F
Sbjct: 109 ----LANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFY-SLNF 163
Query: 119 -LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
+ + LFD +P R++V W MI G K G++E+AR LFE+MP RN +SW+ ++ Y+R
Sbjct: 164 DMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSR 223
Query: 178 MN----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
+ R A T P+E +++VL A GA+ +H Y ++ F++ I
Sbjct: 224 VGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPI- 282
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
++ L+D Y+KCGC+ SAL F+ I K+ +W ++ISG AM+G ++E F +M
Sbjct: 283 LATALVDMYSKCGCVESALSTFQGIP--NKDAGAWNAMISGVAMNGDAWKSLELFNKMIS 340
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
G +P TF++VL AC+H L HY CLVD++ RAG L
Sbjct: 341 NGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLA 400
Query: 326 QAEKIALGIPSEI-----TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
+AEK I ++ D V +LGAC +GN+E+G RV +K+ +M + G +VL
Sbjct: 401 EAEKF---IEEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKKLADMGVADCGTHVL 457
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YN+ G ++A+R+RR++ E K PG S++
Sbjct: 458 SYNLYREAGWDMEAKRVRRLISEAGMKKKPGCSII 492
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 233/449 (51%), Gaps = 85/449 (18%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N ++ ++ S +KA LL++QL++ SP D+FTY F+ + L
Sbjct: 98 FIYNLVIKAFTKNGSFRKAVLLFRQLRE---EGLSP-----DNFTYPFVFKAIGCLGEVR 149
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G +++ + K G + YV +L++MY +G +++ ++F+E+P+R++V+WNV+I+G V
Sbjct: 150 EGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYV 209
Query: 146 K-------------------------W----------GELEYARSLFEEMPCRNVVSWTG 170
K W G+L+ AR LFE P R+VV WT
Sbjct: 210 KCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTA 269
Query: 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
+++GY + NR + A E+ I V P + A+ D V
Sbjct: 270 MINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLT----------------DAVVGT 313
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LI+ YAKCG I +L++F ++ K+ SWTSII G AM+G A+E F M + G+
Sbjct: 314 ALIEMYAKCGFIEKSLEIFN--GLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGV 371
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ +TF+ VL+ACSHGGL HYGCL+D+LGRAG+L++AE
Sbjct: 372 KPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAE 431
Query: 329 KIALGIPSEITDVVVRR--ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
++ P+ +V+V LL AC HGNVEMGERV ++++ +E G+ + L+ NI A
Sbjct: 432 ELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYA 491
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
R+ D ++RR M + K PG S V
Sbjct: 492 SADRWEDVTKVRRKMKDLGVKKVPGCSSV 520
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 235/465 (50%), Gaps = 76/465 (16%)
Query: 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL 74
L T + + ++N ++ + + P +A LY Q+ + SP S+T+ L
Sbjct: 35 LAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANV---SP-----TSYTFPSL 86
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
I+ C +S +H + + GF SHV+V T+LV+ Y S+G +++S ++FDE+PER++
Sbjct: 87 IKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDV 146
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS--------- 185
W M++GLV+ G++ A LF+ MP RN+ +W ++DGY R+ + A
Sbjct: 147 FAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPAR 206
Query: 186 --------------------------------TEPSEITILAVLPAIWQNGAVRNCQLIH 213
P E+T+ V+ A GA+ + IH
Sbjct: 207 DIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIH 266
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
Y + GFN D+ + + LID YAKCG + +L +F + KNL W S+I G A+HG
Sbjct: 267 YYIMQHGFN-LDVYIGSALIDMYAKCGSLDRSLLMF--FKLREKNLFCWNSVIEGLAVHG 323
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
+ A+ F++M++ +KPN VTF+SVL+AC+H GL HY
Sbjct: 324 YAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHY 383
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VD+L +AG LE+A ++ + E + V+ LL C H N+E+ + K++ +E
Sbjct: 384 GCMVDLLSKAGLLEEALQLIRTMKLE-PNAVIWGALLSGCKLHRNLEIAQVAANKLMVLE 442
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPGRSLV 415
GN G Y L+ N+ A V R+ +A ++R M E+ K PG S +
Sbjct: 443 PGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWI 487
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 144/452 (31%), Positives = 237/452 (52%), Gaps = 74/452 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT++ Y + +P+++ L+ Q++ H P+ DS++ S +I+ C L P
Sbjct: 69 TFIWNTMIRAYLNSQNPQESMSLFFQMR------HQECIPI-DSYSLSLVIQACGRLKDP 121
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMY------------------------------- 113
G +LH + K+G S ++V TAL+ MY
Sbjct: 122 GNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEY 181
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
V +G + + LFD +PER+LV+WN MI G G++ A+ LF+ R+++SW+ ++
Sbjct: 182 VRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIA 241
Query: 174 GYTRMNRSNG----------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
Y + +SN A+ P ++T+++VL A GA+ ++IH E+
Sbjct: 242 AYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIE- 300
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D+++ L+D YAKCG I ++L++F + +++ +W+++I G A HG G+ A+++F
Sbjct: 301 IDLKLGTSLVDMYAKCGDIDNSLRVFN--GMNNRDVFAWSAMIMGLANHGFGELALDHFS 358
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
+M +KPN VTF+ VL+ACSH GL HYGC+VD+LGRA
Sbjct: 359 KMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRA 418
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
GRL++A ++ +P D +V R LLGAC + NVE+ E T +LE+E G+YVL+
Sbjct: 419 GRLQEAMELIKSMPFA-PDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLL 477
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
NI + + +RR+M N K PG S
Sbjct: 478 SNIYSQAKEWDKVVNVRRMMKNINIQKVPGSS 509
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 113/282 (40%), Gaps = 47/282 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD---SSKLFDELPERNLVTWNVMITGLV 145
Q+HA+I K + +V L+ + D + +FDE+P + WN MI +
Sbjct: 21 QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80
Query: 146 KWGELEYARSLFEEMPCRNVV-----SWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
+ + SLF +M + + S + ++ R+ +++ + + +
Sbjct: 81 NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140
Query: 201 WQNGAVRNCQLIHGYGE-KRGFNAF------DIRVSNCLIDTYAKCGCIFSALKLFE--- 250
+ A+ ++ +G+ + N D+ N L+ Y + G I A LF+
Sbjct: 141 FVETAL--IEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMP 198
Query: 251 ------------------DISVERK--------NLVSWTSIISGFAMHGMGKAAVENFER 284
D+ +K +L+SW+S+I+ +A A+ F
Sbjct: 199 ERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHE 258
Query: 285 MQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRAGRLE 325
MQ + P++VT +SVL+AC G L G ++ R+E
Sbjct: 259 MQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIE 300
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 140/422 (33%), Positives = 227/422 (53%), Gaps = 48/422 (11%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+ ++H ++L ++A Y Q+ T P ++FT+S +++ C
Sbjct: 41 FFWTAIIHGHALRGLHEQALNFYAQM---LTQGVEP-----NAFTFSSILKLCPI----E 88
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G LH+ K+GF S +YV T L+++Y G + + +LFD +PE++LV+ M+T
Sbjct: 89 PGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYA 148
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILA 195
K GEL+ AR LF+ M R+ V W ++DGYT+ N A +P+E+T+L+
Sbjct: 149 KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS 208
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q GA+ + + +H Y E G F++ V L+D Y+KCG + A +F+ I +
Sbjct: 209 VLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGTALVDMYSKCGSLEDARLVFDKI--D 265
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K++V+W S+I G+AM G + A++ F+ M ++GL P +TF+ +L+AC H G
Sbjct: 266 DKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 325
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+V++LGRAG +EQA ++ + E D V+ LLGAC
Sbjct: 326 IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-PDPVLWGTLLGACRL 384
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG + +GE++ +++ N G Y+L+ NI A VG + RLR +M + K PG S
Sbjct: 385 HGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 444
Query: 414 LV 415
+
Sbjct: 445 SI 446
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 101/265 (38%), Gaps = 76/265 (28%)
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y SLG L S LF ++ W +I G G E A + + +M + V
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV------- 71
Query: 173 DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
EP+ T ++L + + +H K GF++ D+ V L
Sbjct: 72 --------------EPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDS-DLYVRTGL 112
Query: 233 IDTYAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWT 263
+D YA+ G + SA +LF+ + +E ++ V W
Sbjct: 113 LDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 172
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG--------------- 308
+I G+ +GM A+ F RM K KPN VT LSVL+AC G
Sbjct: 173 VMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 232
Query: 309 -----LHYG-CLVDMLGRAGRLEQA 327
+H G LVDM + G LE A
Sbjct: 233 GIQFNVHVGTALVDMYSKCGSLEDA 257
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 208/383 (54%), Gaps = 45/383 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+ I++C L + G Q H GF+ ++V++ALV+MY G L+D+ LFDE+
Sbjct: 78 TFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 137
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
RN+V+W MITG V+ + A +F+ M R+V+SW I+ Y + NG STE
Sbjct: 138 SHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQ----NGMSTESM 193
Query: 190 EI---------------TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
EI T+ AVL A +G+ R + IH K G + ++ V +ID
Sbjct: 194 EIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES-NVFVGTSIID 252
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y KCG + A K F+ + KN+ SW+++++G+ MHG K A+E F M G+KPN
Sbjct: 253 MYCKCGKVEMARKAFD--RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNY 310
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+SVL ACSH GL HYGC+VD+LGRAG L++A +
Sbjct: 311 ITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIK 370
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
G+ D VV LLGAC H NV++GE RK+ E++ N G YVL+ NI A GR+
Sbjct: 371 GMKLR-PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWE 429
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
D ER+R +M +K PG SLV
Sbjct: 430 DVERMRILMKNSGLVKPPGFSLV 452
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 32/212 (15%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
+++ T S ++ C LG +H + K+G +S+V+V T++++MY G ++ + K
Sbjct: 207 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKA 266
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + E+N+ +W+ M+ G G + A +F EM N A
Sbjct: 267 FDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEM---------------------NMAG 305
Query: 186 TEPSEITILAVLPAIWQNGAVRNC-----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+P+ IT ++VL A G + + H + + G + C++D + G
Sbjct: 306 VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY-----GCMVDLLGRAG 360
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
+ A L + + + R + V W +++ MH
Sbjct: 361 YLKEAFDLIKGMKL-RPDFVVWGALLGACRMH 391
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 21/98 (21%)
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----HGG 308
V++ N+ SW S+I+ A G A+ F M+K+ LKPNR TF + +CS H G
Sbjct: 36 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95
Query: 309 -------LHYG---------CLVDMLGRAGRLEQAEKI 330
L +G LVDM + G L A +
Sbjct: 96 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTL 133
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 231/443 (52%), Gaps = 56/443 (12%)
Query: 17 TTNSLLHHTL------------LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP 64
+T +LLH+ + ++N L+ S +++P+ +F Y + + L P
Sbjct: 62 STTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRF------GLLP 115
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
D+ T+ FL++ C L +G Q H K GF+ YV +LV+MY S+G + +
Sbjct: 116 --DNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARS 173
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F + ++V+W MI G + G+ + AR LF+ MP RN+V+W+ ++ GY R N A
Sbjct: 174 VFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKA 233
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
+E ++ V+ + GA+ + H Y + + ++ + ++D
Sbjct: 234 VETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKL-SLNLILGTAVVD 292
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YA+CG + A+ +FE + K+++ WT++I+G AMHG + A+ F M K G P
Sbjct: 293 MYARCGNVEKAVMVFEQLP--EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRD 350
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF +VL ACSH G+ HYGC+VD+LGRAG+L +AEK L
Sbjct: 351 ITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVL 410
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + + + R LLGAC H NVE+GERV + +LEM+ G YVL+ NI A ++
Sbjct: 411 KMPVK-PNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWK 469
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
D +R++M ++ K PG SL+
Sbjct: 470 DVTVMRQMMKDKGVRKPPGYSLI 492
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 212/385 (55%), Gaps = 36/385 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D+FT F++++C LS +G +H +VG + YV +L++MYV G + D+ K
Sbjct: 104 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK 163
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS--- 181
LFD++ R++ +WN +I G +K GE+ A LFE M RN+VSWT ++ GYT+ +
Sbjct: 164 LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQA 223
Query: 182 ---------NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+G+ +P+ +TI++VLPA Q+ A+ + IH + G + + V L
Sbjct: 224 LGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH-LNSSVQTAL 282
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
YAKC + A F+ I+ KNL++W ++I+ +A HG G AV FE M + G++P
Sbjct: 283 AGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQP 342
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
+ VTF+ +L+ CSH GL HY C+VD+LGRAGRL +A+++
Sbjct: 343 DAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 402
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+P + V LL AC H N+E+ E R++ +E N G+YVL+ N+ A G
Sbjct: 403 ISQMPMQ-AGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 461
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+ + ++LR ++ + K PG S +
Sbjct: 462 WEEVKKLRALLKYQGMKKSPGCSWI 486
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/475 (29%), Positives = 234/475 (49%), Gaps = 65/475 (13%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQI------ 54
+P + N RIHSH+ + L ++ N L+ Y +S ++A ++ ++ +
Sbjct: 270 TPEALNRGRRIHSHI-SERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWS 328
Query: 55 -----YTHSHSPLRPLFDSF-----------------TYSFLIRTCVTLSYPNLGTQLHA 92
Y S + D T+ ++R C G Q+HA
Sbjct: 329 AMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHA 388
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
+SKVGF+ + TA+ NMY G + ++ ++F ++ +N+V W ++ +K G+L
Sbjct: 389 ELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSS 448
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQ 202
A +F EMP RNVVSW ++ GY + ++ +P +T++ +L A
Sbjct: 449 AEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGA 508
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
+ +L+H K G + D V+ LI Y+KCG + A +F+ +S ++ V+W
Sbjct: 509 LAGLERGKLVHAEAVKLGLES-DTVVATSLIGMYSKCGQVAEARTVFDKMS--NRDTVAW 565
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
++++G+ HG G AV+ F+RM K + PN +T +V++ACS GL
Sbjct: 566 NAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HYGC+VD+LGRAGRL++AE+ +P E D+ V LLGAC H NV++
Sbjct: 626 DFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCE-PDISVWHALLGACKSHNNVQLA 684
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
ER +LE+E Y+ + NI A GR+ D+ ++RRVMD+R K G S +
Sbjct: 685 ERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSI 739
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 155/297 (52%), Gaps = 38/297 (12%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
L + +++++ Y+ + P KAF ++++ + + + P + T+ +++ C
Sbjct: 119 LRDVVTWSSMIAAYAGNNHPAKAFDTFERM------TDANIEP--NRITFLSILKACNNY 170
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
S G ++H ++ +G ++ V V TAL+ MY G + + ++F ++ ERN+V+W +I
Sbjct: 171 SILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAII 230
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+ +L A L+E+M A P+ +T +++L +
Sbjct: 231 QANAQHRKLNEAFELYEQML---------------------QAGISPNAVTFVSLLNSCN 269
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A+ + IH + +RG D+ V+N LI Y KC + A ++F+ +S +++++S
Sbjct: 270 TPEALNRGRRIHSHISERGLET-DMIVANALITMYCKCNSVQEAREIFDRMS--KRDVIS 326
Query: 262 WTSIISGFAMHG-MGKAAVEN----FERMQKVGLKPNRVTFLSVLNACS-HGGLHYG 312
W+++I+G+A G K +++ ERM++ G+ PN+VTF+S+L AC+ HG L G
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQG 383
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 176/410 (42%), Gaps = 106/410 (25%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+AF LY+Q+ Q + + P ++ T+ L+ +C T N G ++H+ IS+ G ++
Sbjct: 241 EAFELYEQMLQ------AGISP--NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD 292
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+ V AL+ MY K ++ AR +F+ M
Sbjct: 293 MIVANALITMYC-------------------------------KCNSVQEAREIFDRMSK 321
Query: 163 RNVVSWTGILDGYTRMNRSNGASTE---------------PSEITILAVLPAIWQNGAVR 207
R+V+SW+ ++ GY + + S + P+++T +++L A +GA+
Sbjct: 322 RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--------------- 252
+ IH K GF D + + + YAKCG I+ A ++F +
Sbjct: 382 QGRQIHAELSKVGFE-LDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMY 440
Query: 253 -------SVER-------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
S E+ +N+VSW +I+G+A +G E M+ G +P+RVT +
Sbjct: 441 IKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVI 500
Query: 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
++L AC G L + G+L AE + LG+ S D VV L+G S G V
Sbjct: 501 TILEAC-------GALAGL--ERGKLVHAEAVKLGLES---DTVVATSLIGMYSKCGQVA 548
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA----ERLRRVMDER 404
V K+ + D V +LAG G++ D + +R++ ER
Sbjct: 549 EARTVFDKM------SNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKER 592
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L +S TY +I C G +H + ++G + +Y+ +L+N Y + + +
Sbjct: 53 LVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQ 112
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F + R++VTW+ MI G A++ D + RM +N
Sbjct: 113 VFRRMTLRDVVTWSSMIAAYA--GNNHPAKA----------------FDTFERMTDAN-- 152
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP+ IT L++L A + + IH + G D+ V+ LI Y+KCG I
Sbjct: 153 -IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMET-DVAVATALITMYSKCGEISV 210
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F ++ +N+VSWT+II A H A E +E+M + G+ PN VTF+S+LN+C
Sbjct: 211 ACEVFHKMT--ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268
Query: 305 S 305
+
Sbjct: 269 N 269
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/455 (31%), Positives = 234/455 (51%), Gaps = 71/455 (15%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NTL+ + + +P+ A +Y ++ + +RP D T+ F++R C +
Sbjct: 74 FMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRP--DKRTFPFVLRACAAMGASE 131
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS---------------------- 123
G Q+HA + K G +S +V AL+ M+ + G L ++
Sbjct: 132 TGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFA 191
Query: 124 ---------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
+LFDE P ++LV+WNVMIT K G++ AR LF+ P R+VVSW ++ G
Sbjct: 192 RRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISG 251
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
Y R A +P +T+L++L A +G + + +H + R F+
Sbjct: 252 YVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGR-FSRI 310
Query: 225 --DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ N LID YAKCG + SAL++F ++ KN+ +W SII G A+HG A++ F
Sbjct: 311 GPSTVLGNALIDMYAKCGSMTSALEVF--WLMQDKNVSTWNSIIGGLALHGHVTEAIDVF 368
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
++M + +KP+ +TF++VL ACSHGG+ HYGC+VDML R
Sbjct: 369 QKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSR 428
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG L++A + +G + V+ R LLGAC HG +E+ E +++L+ GD+VL
Sbjct: 429 AGLLKEAFEF-IGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVL 487
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ NI A VG ++ +E +R++MD+ K G ++V
Sbjct: 488 LSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVV 522
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 228/441 (51%), Gaps = 52/441 (11%)
Query: 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
V T+IHS L + +NT++ +S + +P A L+ + + S P R
Sbjct: 80 VFTQIHSPNLFS---------WNTIIRGFSQSSTPHHAISLF--IDMLIVSSVQPHR--- 125
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
TY + + L + G QLH + K+G Q ++ ++ MY + GFL + K F
Sbjct: 126 --LTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAF 183
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
E + ++V WN MI GL K GE++ +R LF+EMP RN VSW ++ GY R R A
Sbjct: 184 YERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALD 243
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+PSE T++++L A + GA++ + IH Y K F ++ V+ +ID Y
Sbjct: 244 LFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFE-LNVIVTASIIDMY 302
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCG I A ++FE + K L SW ++I G AM+G A++ F R++ L+P+ VT
Sbjct: 303 CKCGSIGEAFQVFEMAPL--KGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVT 360
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL AC++ GL HY C+VD LGRAG LE+AE++ +
Sbjct: 361 FVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNM 420
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P D ++ LL AC HGNVE+ +R + +++++ + YVL+ NI A ++ +A
Sbjct: 421 PVN-PDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEA 479
Query: 395 ERLRRVMDERNALKFPGRSLV 415
R M E+ K PG SL+
Sbjct: 480 MEQRLSMKEKQIEKEPGCSLI 500
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 50/242 (20%)
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKW------GELEYARSLFEEMPCRNVVSWTGIL 172
+KD K+ L + L + ++ ++ + G++ YA +F ++ N+ SW I+
Sbjct: 37 MKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTII 96
Query: 173 DGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
G+++ + + A S +P +T +V A Q G +HG K G
Sbjct: 97 RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGL 156
Query: 222 N------------------------------AFDIRVSNCLIDTYAKCGCIFSALKLFED 251
FDI N +I AKCG + + KLF++
Sbjct: 157 QFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDE 216
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLH 310
+ + +N VSW S+ISG+ +G + A++ F +MQ+ +KP+ T +S+LNA + G L
Sbjct: 217 MPL--RNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALK 274
Query: 311 YG 312
G
Sbjct: 275 QG 276
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 208/394 (52%), Gaps = 42/394 (10%)
Query: 57 HSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI-SKVGFQSHVYVNTALVNMYVS 115
S L P D T + C L LG ++H + V F + AL++MY
Sbjct: 230 QEESGLMP--DEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTP--IIGNALLDMYCK 285
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
G L + +F+E+P +N++ W M++G GELE AR LFE P R+VV WT +++GY
Sbjct: 286 CGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGY 345
Query: 176 TRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+ NR + A +P + ++++L Q GA+ + IH + ++ D
Sbjct: 346 VQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI-PID 404
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
V LI+ YAKCG I AL++F + V K+ SWTSII G AM+G A+E F +M
Sbjct: 405 AVVGTALIEMYAKCGFIEKALEIFYGLRV--KDTASWTSIICGLAMNGKTSKALELFSKM 462
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGR 323
++ G++P+ +TF+ VL+ACSHGGL HYGCLVD+LGRAG
Sbjct: 463 KQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGL 522
Query: 324 LEQAEKIALGIPSEITDVVVRRI--LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
L +AE++ IP E + V LL AC +GNVEMGERV +++++ E + + L+
Sbjct: 523 LNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLL 582
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A R+ D ++RR M + K PG S +
Sbjct: 583 ANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSI 616
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 195/478 (40%), Gaps = 130/478 (27%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++N ++ ++ + K+ +L+ +L++ L P D+FTY F+ + L +
Sbjct: 103 LIYNLIIKAFAKKGNYKRTLVLFSKLRE------DGLWP--DNFTYPFVFKAIGYLGEVS 154
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+L +++K G + YV +L++MY L LFDE+P+R++++WNVMI+G V
Sbjct: 155 KAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYV 214
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K E A ++F RM +G P E T+++ L A
Sbjct: 215 KCRRFEDAINVF------------------CRMQEESGLM--PDEATVVSTLSACTALKR 254
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IH Y R F + N L+D Y KCGC+ A +FE++ KN++ WT++
Sbjct: 255 LELGKKIHHY--VRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMP--SKNVICWTTM 310
Query: 266 ISGFAMHGMGKAAVENFE-------------------------------RMQKVGLKPNR 294
+SG+A G + A E FE MQ +KP++
Sbjct: 311 VSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDK 370
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+S+L C+ G + G L++M + G +E+A +I G
Sbjct: 371 FIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYG 430
Query: 334 I-------------------------------------PSEITDVVVRRILLGACSFHGN 356
+ P +IT + V L ACS G
Sbjct: 431 LRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGV----LSACSHGGL 486
Query: 357 VEMGERVTRKVLEME---RGNGGDYVLMYNILAGVGRYVDAERL-RRVMDERNALKFP 410
VE G + + ME + Y + ++L G +AE L +++ DE A+ P
Sbjct: 487 VEEGRKFFNS-MRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVP 543
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 30/234 (12%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL--GFLKDSSKLFDELPER 132
+++C ++++ Q+HA I +VG + L+ G L + K+F +
Sbjct: 44 LKSCKSMTHLK---QIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYP 100
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
L+ +N++I K G + LF ++ R +G P T
Sbjct: 101 CLLIYNLIIKAFAKKGNYKRTLVLFSKL-------------------REDGLW--PDNFT 139
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
V AI G V + + G K G FD V N LID YA+ LF+++
Sbjct: 140 YPFVFKAIGYLGEVSKAEKLRGLVTKTGLE-FDTYVRNSLIDMYAQLALTDVMKMLFDEM 198
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGLKPNRVTFLSVLNACS 305
++++SW +ISG+ + A+ F RMQ + GL P+ T +S L+AC+
Sbjct: 199 P--DRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACT 250
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFD 127
T+ FL R L+ P L LH+ ++G +++ + V+MY + + +LFD
Sbjct: 61 LTFPFLGRAAARLASPRLALSLHSHPLRLGLLPCDLHIANSFVHMYAACALPDLARRLFD 120
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------- 180
E+P N V+WN ++ G K +L AR +F+ MP R+VVSW+ ++DG +
Sbjct: 121 EIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALAL 180
Query: 181 -------SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
+ G +++T++++L A G +R + +H Y ++RGF ++R++ L+
Sbjct: 181 FEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGF-LLNLRLATSLV 239
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D YAKCG I AL++F + V +++ W ++I G A+HGMG VE F+ MQ G+ P+
Sbjct: 240 DMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVVPD 299
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+T+L +L+AC HGGL HY CLVD+L RAGRLE+A +
Sbjct: 300 EITYLGLLSACVHGGLVDEAWRFFCSLEAQGLRPHVEHYACLVDVLSRAGRLEEAYGVVK 359
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P E + V V +L AC HG VE+GE V R+++ ++ + G Y+ + NI A R+
Sbjct: 360 SMPMEPS-VSVLGAILNACHLHGWVELGEVVGRQLVRLQPDHDGRYIGLSNIYAVAKRWQ 418
Query: 393 DAERLRRVMDERNALKFPGRS 413
+A++ R+VM ER K PG S
Sbjct: 419 EAKKARKVMSERGLKKIPGFS 439
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 230/421 (54%), Gaps = 44/421 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N+L+ S + +P +A LY + Q S L+P D TY F+I+ C S
Sbjct: 133 LYNSLIRALSSSKTPLEALPLYHTMLQ------SGLKP--DHMTYPFVIKACNESSVTWF 184
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G +H + K GF+ Y+ ++L+++Y + L + +LF+ R++V+WN MI G VK
Sbjct: 185 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 244
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
E+ +AR +F+ M CR+V+SW +++GY + N A +P+E T++++
Sbjct: 245 HVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSL 304
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A GA+ +H Y I V L+D YAKCG I A ++F ++E
Sbjct: 305 LSACAHLGALDKGLHLHTYINDNRIEVNSI-VGTALVDMYAKCGKISLATQVFN--AMES 361
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K++++W +II+G A+HG K A + F+ M++ G++PN +TF+++L+ACSH G+
Sbjct: 362 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 421
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC++D+L RAG LE+A ++ +P E + LLG C H
Sbjct: 422 LDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGA-LLGGCRIH 480
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
GN E+GE V ++++ ++ + G Y+L+ NI A ++ DA ++R +M K PG S+
Sbjct: 481 GNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 540
Query: 415 V 415
+
Sbjct: 541 I 541
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 233/443 (52%), Gaps = 55/443 (12%)
Query: 12 HSHLLTTNSLLHHTL-----LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
H + + +L H T+ LF ++ S+ +AFLLY QL S + P
Sbjct: 77 HGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS------SEINP-- 128
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+S L+++C T S G +H + K G YV T LV++Y G + + K+F
Sbjct: 129 NEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVF 184
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D +PER+LV+ MIT K G +E AR+LF+ M R++VSW ++DGY + N A
Sbjct: 185 DRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALM 244
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+P EIT++A L A Q GA+ + IH + + +++V LID
Sbjct: 245 LFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIR-LNVKVCTGLIDM 303
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNR 294
Y+KCG + A+ +F D RK++V+W ++I+G+AMHG + A+ F MQ + GL+P
Sbjct: 304 YSKCGSLEEAVLVFND--TPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+ L AC+H GL HYGCLV +LGRAG+L++A +
Sbjct: 362 ITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIK 421
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+ + D V+ +LG+C HG+ +G+ + ++ + N G YVL+ NI A VG Y
Sbjct: 422 NMNMD-ADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
++R +M E+ +K PG S +
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTI 503
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 212/384 (55%), Gaps = 38/384 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T+ FL+++ + S +LG +HA I + G +V T+L++MY S G L + ++F
Sbjct: 63 DFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVF 122
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+P+ +L +WN +I + G ++ AR+LF MP RNV+SW+ +++GY R + A
Sbjct: 123 DEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALA 182
Query: 185 -----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
P+E T+ VL A + GA+ + + H Y +K G D+ + LI
Sbjct: 183 LFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV-DVVLGTALI 241
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D YAKCG + A +F ++ K++++W+++ISG AMHG+ + V F +M G++PN
Sbjct: 242 DMYAKCGSVEKATWVFSNLG-PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPN 300
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
VTFL+V AC HGGL HYGC+VD+ GRAGR+++A +
Sbjct: 301 AVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVV 360
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P E DV+V LL HG++E E +K++E+E N G YVL+ N+ A GR+
Sbjct: 361 KSMPME-PDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRW 419
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
D +R +M+ K PG SL+
Sbjct: 420 EDVRHVRDLMETMGIKKVPGCSLI 443
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 233/448 (52%), Gaps = 52/448 (11%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
S+N + H++ L T ++NT++ ++ + P+KA +L+K + +S
Sbjct: 55 SSNQFSLSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNML------YSNFL 108
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P +++TYSFL + C L+ LG H K+G++ + +V LV+M+ G + +
Sbjct: 109 P--NNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSAR 166
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
KLFD R+++TW +I G V+ G++ R LF++MP RN VSW+ ++ GY R+ G
Sbjct: 167 KLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRV----G 222
Query: 184 ASTEPSEITILAVLPAIWQN--------------GAVRNCQLIHGYGEKRGFNAFDIRVS 229
E E+ ++ W N GA+ + IH Y KR D +
Sbjct: 223 FFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCY-IKRNRMDLDRVMG 281
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
LID YAKCGCI A +F ++ +++ +T +ISG A HG AVE FERM G
Sbjct: 282 AALIDMYAKCGCIEIACSIFGEL--RNRDVHVYTCLISGLANHGQSATAVELFERMHSEG 339
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
+ PN VTF+SVLNACS GL HYGCLVD+LGRAG+LE+A
Sbjct: 340 VVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEA 399
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+K+ +P + D V LL A +G+VE+GE + ++ + G +V++ N+ A
Sbjct: 400 KKLVKEMPMK-PDSYVLGALLNASRVYGDVELGEETVESLAQLSLDHSGVHVVLSNMYAS 458
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
++ + R+RR M ++ K PG SL+
Sbjct: 459 ANKWDEVARVRRGMGDKKVRKVPGCSLI 486
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 226/422 (53%), Gaps = 38/422 (9%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L N ++ Y+ + A +Y ++ + T S D FTY FL++ C + L
Sbjct: 79 LHNAMIKAYAQNHQHRDAVAVYIRMLRCPT-SPPDGHAGGDRFTYPFLLKACGGTAALEL 137
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+H + + G S V +L+ MY G L + K+FDE+ ER++V+WN++I+ +
Sbjct: 138 GKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHAR 197
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAV 196
G++ A +LF MP + +V+WT ++ GYT + GA EP +++I+AV
Sbjct: 198 LGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAV 257
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
LPA Q GA+ + I+ Y ++ G + N L++ YAKCGCI AL+LF+ ++
Sbjct: 258 LPACAQLGALELGRWIYAYCKRHGM-LTSTHICNALMEMYAKCGCIDQALQLFDGMA--D 314
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGL------ 309
K+++SW+++I G A HG AV F M+K G ++PN +TF+ +L+ACS+ GL
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLS 374
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR+G++ +A + +P D V LL AC
Sbjct: 375 HFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVP-ADAKVWGSLLSACRS 433
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG+V+ +++E+E + G+ V++ N+ A R+ D R+ + R+ K PG S
Sbjct: 434 HGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCS 493
Query: 414 LV 415
L+
Sbjct: 494 LI 495
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 226/422 (53%), Gaps = 38/422 (9%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L N ++ Y+ + A +Y ++ + T S D FTY FL++ C + L
Sbjct: 79 LHNAMIKAYAQNHQHRDAVAVYIRMLRCPT-SPPDGHAGGDRFTYPFLLKACGGTAALEL 137
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+H + + G S V +L+ MY G L + K+FDE+ ER++V+WN++I+ +
Sbjct: 138 GKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHAR 197
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAV 196
G++ A +LF MP + +V+WT ++ GYT + GA EP +++I+AV
Sbjct: 198 LGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAV 257
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
LPA Q GA+ + I+ Y ++ G + N L++ YAKCGCI AL+LF+ ++
Sbjct: 258 LPACAQLGALELGRWIYAYCKRHGM-LTSTHICNALMEMYAKCGCIDQALQLFDGMA--D 314
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGL------ 309
K+++SW+++I G A HG AV F M+K G ++PN +TF+ +L+ACS+ GL
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLS 374
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR+G++ +A + +P D V LL AC
Sbjct: 375 HFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVP-ADAKVWGSLLSACRS 433
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG+V+ +++E+E + G+ V++ N+ A R+ D R+ + R+ K PG S
Sbjct: 434 HGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCS 493
Query: 414 LV 415
L+
Sbjct: 494 LI 495
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 212/384 (55%), Gaps = 38/384 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DS+++ F+++ V LS ++G Q+H G SH V T+LV MY S L + KLF
Sbjct: 126 DSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVVTSLVQMYSSCAHLSSARKLF 185
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGA 184
D ++ WN M+ G K G + AR+LFE MP R+VVSWT ++ GYT+ + N A
Sbjct: 186 DGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEA 245
Query: 185 ST----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLI 233
T +P EI ILAVL A GA++ + IH Y EK + + N LI
Sbjct: 246 ITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPLCNSLI 305
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D YAK G I A +LF+++ + K +++WT++ISG A+HG GK A++ F M+K +KPN
Sbjct: 306 DMYAKSGDISKARQLFQNM--KHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVKPN 363
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
VT ++VL+ACSH GL HYGC++D+LGRAG L++A ++
Sbjct: 364 EVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQEAMELV 423
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+PSE + V LL A + +G+ + R + +E N G+Y L+ N A +G +
Sbjct: 424 RVMPSE-ANAAVWGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNYSLLSNTYAALGWW 482
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
+A +R+VM + A K PG S V
Sbjct: 483 KEAAMVRKVMRDTCAEKVPGVSFV 506
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/399 (34%), Positives = 218/399 (54%), Gaps = 44/399 (11%)
Query: 54 IYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113
++ H + L D + + ++++C + P LGT +HA I K+GF S+ +V +ALV+MY
Sbjct: 49 LFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVHAHIVKMGFLSNPFVASALVDMY 108
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS------ 167
+ + KLFDE+P+RN+V WN MI+ + A +F+ M VS
Sbjct: 109 GKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVSTFNALI 168
Query: 168 --WTGILDG-------YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
+G+ DG Y +M + +P+ IT+LA+LPA A+ + IHGY +
Sbjct: 169 YGLSGVKDGSIKAIAFYWKMRQ---LGLKPNLITLLALLPACVGIAALNLIREIHGYSIR 225
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+ ++ + L+D Y +CGC+ +A +F ++ +++V+W+S+IS +A+HG K A
Sbjct: 226 NDIDRHP-QLGSGLLDAYGRCGCLINASNVF--CGMKERDVVAWSSLISAYALHGEAKNA 282
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+E F +M+ ++P+ +TFL+VL ACSH GL HY CLVD
Sbjct: 283 LEIFRQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQEGYRLQAVSDHYSCLVD 342
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+L RAGRL +A K+ +P ++T LLGAC +G +E+ E V R + E+E N
Sbjct: 343 VLSRAGRLYEAYKVIQEMPVKVT-AKAWGALLGACRTYGEIELAEIVGRALFEIEPDNPA 401
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+YVL+ I A VGRY +A+R+RR M ER PG S V
Sbjct: 402 NYVLLARIYASVGRYDEAQRIRREMKERGVKVSPGSSWV 440
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 231/435 (53%), Gaps = 55/435 (12%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL 62
S+ + + H+H + +LFNT+ Y+ D P +A LL Q+ S L
Sbjct: 78 SNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLC------SGL 131
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
P D +T+S L++ C L G QLH + K+G ++YV L+NMY + + +
Sbjct: 132 LP--DDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAA 189
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
++FD++ E +V +N +IT + A +LF E+
Sbjct: 190 RRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFREL---------------------Q 228
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ +P+++T+L L + GA+ + IH Y +K GF+ + ++V+ LID YAKCG +
Sbjct: 229 ESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQY-VKVNTALIDMYAKCGSL 287
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A+ +F+D+ R++ +W+++I +A HG G A+ M+K ++P+ +TFL +L
Sbjct: 288 DDAVSVFKDMP--RRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILY 345
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HYGC++D+LGRAGRLE+A K +P + T
Sbjct: 346 ACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTP 405
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
++ R LL +CS HGNVEM + V +++ E++ +GGDYV++ N+ A GR+ D LR++
Sbjct: 406 -ILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKM 464
Query: 401 MDERNALKFPGRSLV 415
M ++ ALK PG S +
Sbjct: 465 MVDKGALKVPGCSSI 479
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 135/331 (40%), Gaps = 65/331 (19%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + P +A L+++LQ+ S L+P T + +C L +LG
Sbjct: 204 YNAIITSCARNSRPNEALALFRELQE------SGLKPT--DVTMLVALSSCALLGALDLG 255
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + K GF +V VNTAL++MY G L D+ +F ++P R+ W+ MI
Sbjct: 256 RWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATH 315
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A S+ EM A +P EIT L +L A G V
Sbjct: 316 GHGSQAISMLREM---------------------KKAKVQPDEITFLGILYACSHTGLVE 354
Query: 208 N-CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ H + G I+ C+ID + G + A K +++ ++ ++ W +++
Sbjct: 355 EGYEYFHSMTHEYGI-VPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPIL-WRTLL 412
Query: 267 SGFAMHG---MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR 323
S + HG M K ++ + SHGG Y L ++ R GR
Sbjct: 413 SSCSSHGNVEMAKLVIQRIFELDD-----------------SHGG-DYVILSNLCARNGR 454
Query: 324 LEQ--------AEKIALGIPS----EITDVV 342
+ +K AL +P E+ +VV
Sbjct: 455 WDDVNHLRKMMVDKGALKVPGCSSIEVNNVV 485
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 232/437 (53%), Gaps = 44/437 (10%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH-SHSPLRPLFDSFT 70
+++L+ T + ++NT++ +S + +P A L+ + ++T + P R T
Sbjct: 47 YAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLF--IDMMFTSPTTQPQR-----LT 99
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y + + L + G QLH + K+G ++ ++ ++NMYV+ GFL ++ ++FD
Sbjct: 100 YPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGAT 159
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNR 180
++VTWN MI GL K GE++ +R LF++M RN VSW ++ GY R +R
Sbjct: 160 GFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSR 219
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+PSE T++++L A GA+R + IH Y K F A + V +ID Y+KCG
Sbjct: 220 MQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNF-ALNSIVITAIIDMYSKCG 278
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
I AL++F+ S +K L W S+I G AM G G AV F +++ LKP+ V+F+ V
Sbjct: 279 SIDKALQVFK--SAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGV 336
Query: 301 LNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
L AC+H G+ HY C+VD+LGRAG LE+AE++ +P
Sbjct: 337 LTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVN- 395
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D ++ LL +C +GN+EM ++ ++V E++ ++L+ N+ A + +A R
Sbjct: 396 PDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQR 455
Query: 399 RVMDERNALKFPGRSLV 415
+ E+ K PG SL+
Sbjct: 456 LSLKEKQMDKEPGCSLI 472
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 231/421 (54%), Gaps = 45/421 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
LFN+++ +SL+ ++ LL+ ++ H P D +T++ L+++C L +
Sbjct: 73 FLFNSIIKAHSLSVPFHQSLLLFSSMK---NHRIVP-----DQYTFAPLLKSCANLCEYS 124
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG + + + + GF + +V +YV ++D+ K+FDE+ R++V WN+MI G
Sbjct: 125 LGQCVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFC 184
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE-----------PSEITIL 194
K G +++ LF +M R++VSW I+ + NR + + E P E+T++
Sbjct: 185 KTGNVDFGLCLFRQMSERSLVSWNTIISCLAQ-NRRDVEALELFQQMEEHGFKPDEVTVV 243
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+LP + GA+ Q IH Y +G V N LID Y KCG I A +F+ ++
Sbjct: 244 TMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTC 303
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K++VSW +II GFA++G G+ A++ F M+K LKPN TF++VL AC H GL
Sbjct: 304 --KSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGR 361
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
H+GC+VD+LGR G +E+A K+ +P + + + +LGAC
Sbjct: 362 ELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQ-PNATLWGAVLGACR 420
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGN+++ E ++++ +E N G+YVL+ N+LA GR+ + E +R+ M E++ K PG+
Sbjct: 421 THGNLKLAEMAVKELISLEPWNSGNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKAPGQ 480
Query: 413 S 413
S
Sbjct: 481 S 481
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 233/443 (52%), Gaps = 55/443 (12%)
Query: 12 HSHLLTTNSLLHHTL-----LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
H + + +L H T+ LF ++ S+ +AFLLY QL S + P
Sbjct: 75 HGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS------SQINP-- 126
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+S ++++C T S G +H + K G YV T LV++Y G + + K+F
Sbjct: 127 NEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVF 182
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D +PER+LV+ MIT K G +E AR+LF+ M R++VSW ++DGY++ + A
Sbjct: 183 DRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALM 242
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+P EIT++A L A Q GA+ + IH + +++V LID
Sbjct: 243 LFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIR-LNVKVCTALIDM 301
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNR 294
Y+KCG + A+ +F D RK++V+W ++I+G+AMHG + A+ F+ MQ + GL+P
Sbjct: 302 YSKCGSLEEAVLVFND--TPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTD 359
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+ L AC+H GL HYGCLV +LGRAG+L++A +I
Sbjct: 360 ITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIK 419
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+ E D V+ +LG+C HG +G+ + ++ N G YVL+ NI A VG Y
Sbjct: 420 NMNME-ADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYE 478
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
++R +M E+ +K PG S +
Sbjct: 479 GVAKVRNLMKEKGIVKEPGISTI 501
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/424 (33%), Positives = 228/424 (53%), Gaps = 45/424 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T +N ++ ++L S A + Q+++ + P F S Y F ++ C L
Sbjct: 102 TFCYNVIIRLHTLHSSALSALHFFLQMRRF------SVPPDFHS--YPFALKACAHLRVL 153
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+L LH+ + K GF S +YV +L+++Y L + ++FDE +R++V++N ++ G
Sbjct: 154 SLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVVSYNALVDGF 213
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITIL 194
VK GE AR +F+ MP R+ VSW ++ GY + + N G EP I ++
Sbjct: 214 VKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLEPDNIALV 273
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ L A Q G + + IH Y +K A D +S L+D YAK GCI +A+K+FE +S
Sbjct: 274 SALSACAQLGELEKGKQIHDYIKKNRIQA-DSFLSTGLVDFYAKSGCIDTAIKVFE-LSP 331
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+ K+L++W +++ G AMHG + F RM + G+KP+ ++FL VL CSHGGL
Sbjct: 332 D-KSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVGCSHGGLVDEAK 390
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+ D+L RAG +++A ++ G+P D+ V LLG C
Sbjct: 391 KLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMG-GDIFVWSGLLGGCR 449
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF-PG 411
HGN+E+ E+ ++V+E++ +GG Y ++ N+ A R+ D ++RR M A+K G
Sbjct: 450 IHGNIEIAEQAAKQVMELKPEDGGVYSILANVYANADRWEDVVKIRRSMSSNRAVKKNAG 509
Query: 412 RSLV 415
RS +
Sbjct: 510 RSSI 513
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 229/455 (50%), Gaps = 80/455 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ + P KA LLY ++ + HS RP + +TY +++ C
Sbjct: 104 FLWNCMIKVCIENNEPFKAILLYYEM--VVAHS----RP--NKYTYPAVLKACSDSGVVA 155
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE----------------- 128
G Q+HA + K G ++ ++ + MY S G L ++ ++ D+
Sbjct: 156 EGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGY 215
Query: 129 ---------------LPERNLV-TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
+P+R+++ TWN MI+G + G +E AR F+EM R+ +SW+ ++
Sbjct: 216 LRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMI 275
Query: 173 DGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
DGY + ++ P + + +VL A GA+ + IH Y KR
Sbjct: 276 DGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA-KRNSI 334
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
D + L+D YAKCG I A ++FE +S K + SW ++I G AMHG + A++ F
Sbjct: 335 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGRAEDAIDLF 392
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
+M + PN +TF+ VLNAC+HGGL HYGC+VD+LGR
Sbjct: 393 SKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGR 449
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG L +AEK+ IP+E T V LLGAC HGNVE+GERV + +LE+E N G Y L
Sbjct: 450 AGLLTEAEKVVSSIPTEPTPAVWG-ALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 508
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ NI A GR+ + +R++M ER PG S++
Sbjct: 509 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSII 543
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 141/372 (37%), Gaps = 111/372 (29%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-----LKDSSKLFDE 128
L+ T T S +L Q HA+I + G Y+ +LV Y ++ + S ++FD
Sbjct: 39 LLNTQCTTSLHHL-KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDF 97
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ + N+ WN MI ++ E A L+ EM VV A + P
Sbjct: 98 VRKPNVFLWNCMIKVCIENNEPFKAILLYYEM----VV-----------------AHSRP 136
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA------------------------- 223
++ T AVL A +G V +H + K G
Sbjct: 137 NKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRIL 196
Query: 224 ------FDIRVSNCLIDTYAKCGCIFSALKLFEDI------------------------- 252
D N +ID Y + G + +A +LFE +
Sbjct: 197 DDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVA 256
Query: 253 -----SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH- 306
++ ++ +SW+++I G+ G A+E F +MQK ++P + SVL+AC++
Sbjct: 257 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 316
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G L G LVDM + GR++ A ++ + ++ +V
Sbjct: 317 GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK--EVSSWNA 374
Query: 347 LLGACSFHGNVE 358
++G + HG E
Sbjct: 375 MIGGLAMHGRAE 386
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 239/462 (51%), Gaps = 60/462 (12%)
Query: 6 NVTTRIHSHLL-----TTNSLLHHTLLFNTLLHFYSLADSPKK-AFLLYKQLQQIYTHSH 59
N ++H+H L T LL LL L++ L D + LY +L Q Y+ H
Sbjct: 2 NQIKQLHAHCLRTGVDETKDLLQRLLLIPNLVYARKLFDLHRNPCIFLYNKLIQSYSVHH 61
Query: 60 SP--------------LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
P +RP + T++F+ + S LH+ + GF+S +
Sbjct: 62 QPHESIVLYNLLSFDGIRP--NHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
TAL+ Y LG L + ++FDE+ R++ WN MITG + G+++ A LF+ MP +NV
Sbjct: 120 CTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNV 179
Query: 166 VSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHG 214
SWT ++ G+++ + A S +P+ IT+++VLPA G + + + G
Sbjct: 180 TSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIGRRLEG 239
Query: 215 YGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
Y + GF FD I V N ++ Y+KCG I A +LF++I +R NL+SW S+I A HG
Sbjct: 240 YARENGF--FDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQR-NLISWNSMIGSLATHG 296
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
A+E + +M + G +P+ VTF+ +L AC HGG+ HY
Sbjct: 297 KHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISPKLEHY 356
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC++D+LGR G+L++A + +P + D VV LLGACSFHGNVE+ E + ++++E
Sbjct: 357 GCMIDLLGRVGKLQEACDLIKTMPMK-PDAVVWGTLLGACSFHGNVEIAEIASEALMKLE 415
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
N G+ V+M NI A ++ R+R++M + K G S
Sbjct: 416 PTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYS 457
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 214/382 (56%), Gaps = 39/382 (10%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLFD 127
T+ FL R L+ P L +HA + G H ++V+ +LV+MY + + +LFD
Sbjct: 63 LTFPFLARAAARLATPRLARAVHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLARRLFD 122
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P N V+WN ++ G K +L AR +F MP R+VVSW+ ++DG + A
Sbjct: 123 EIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAV 182
Query: 185 ------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+++T+++VL A G + + +H Y E+ GF +IR++ L
Sbjct: 183 FEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGF-PLNIRLATSL 241
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
+D YAKCG I AL++F+ + VE +++ W ++I G A+HGM + +++ F++M+ G+ P
Sbjct: 242 VDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVP 301
Query: 293 NRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIA 331
+ +T+LS+L+AC HGGL HY CLVD+LGRAGRLE+A +
Sbjct: 302 DEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVDVLGRAGRLEEAYGVV 361
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P + + V V LL AC HG VE+GE V R+++ ++ + G Y+ + NI A R+
Sbjct: 362 KSMPMKPS-VSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRW 420
Query: 392 VDAERLRRVMDERNALKFPGRS 413
+A++ R+VM+ER K PG S
Sbjct: 421 QEAKKARKVMEERGVKKVPGFS 442
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 212/381 (55%), Gaps = 38/381 (9%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFD 127
T+ FL R L+ P L LHA ++G +YV +LV+MY + + +LFD
Sbjct: 61 LTFPFLGRAAARLASPRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARRLFD 120
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---------- 177
E+P NLV+WN ++ G K +L AR +F MP R+VVSW+ ++DG +
Sbjct: 121 EIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREALAL 180
Query: 178 --MNRSNGAS--TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
M + GA +++T+++VL A G + + +H Y ++ GF ++R++ L+
Sbjct: 181 FEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGF-LLNLRLATSLV 239
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D YAKCG I AL++F + V +++ W ++I G A+HG+ +VE F+ MQ G+ P+
Sbjct: 240 DMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPD 299
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+T+L +L+AC HGGL HY CLVD+LGRAG LE+A +
Sbjct: 300 EITYLVLLSACVHGGLVGEAWRLFRSLEVQGLRPHVEHYACLVDVLGRAGHLEEAYGVVK 359
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P E +V V LL AC HG VE+GE V R++++++ + G Y+ + NI A R+
Sbjct: 360 SMPME-PNVSVLGALLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAIARRWQ 418
Query: 393 DAERLRRVMDERNALKFPGRS 413
+A++ R+VM+ER K PG S
Sbjct: 419 EAKKARKVMEERGVKKIPGFS 439
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 148/455 (32%), Positives = 227/455 (49%), Gaps = 80/455 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ + P KA LLY ++ + RP + +TY +++ C
Sbjct: 103 FLWNCMIKVCIENNEPFKAILLYYEMMVAH------FRP--NKYTYPAVLKACSDAGVVA 154
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE----------------- 128
G Q+HA + K G ++ ++ + MY S G L ++ ++ D+
Sbjct: 155 EGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGY 214
Query: 129 ---------------LPERNLV-TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
+P+R+++ TWN MI+G + G +E AR F+EM R+ +SW+ ++
Sbjct: 215 LRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMI 274
Query: 173 DGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
DGY + ++ P + + +VL A GA+ + IH Y KR
Sbjct: 275 DGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA-KRNSI 333
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
D + L+D YAKCG I A ++FE +S K + SW ++I G AMHG + A++ F
Sbjct: 334 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGRAEDAIDLF 391
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
+M + PN +TF+ VLNAC+HGGL HYGC+VD+LGR
Sbjct: 392 SKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGR 448
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG L +AEK+ IP+E T V LLGAC HGNVE+GERV + +LE+E N G Y L
Sbjct: 449 AGLLTEAEKVVSSIPTEPTPAVWG-ALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 507
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ NI A GR+ + +R++M ER PG S++
Sbjct: 508 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSII 542
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 137/372 (36%), Gaps = 111/372 (29%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-----LKDSSKLFDE 128
L+ T T S +L Q HA+I + G Y+ +LV Y ++ + S ++FD
Sbjct: 38 LLNTQCTTSLHHL-KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDF 96
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ + N+ WN MI ++ E A L+ EM A P
Sbjct: 97 VRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMV---------------------AHFRP 135
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA------------------------- 223
++ T AVL A G V +H + K G
Sbjct: 136 NKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRIL 195
Query: 224 ------FDIRVSNCLIDTYAKCGCIFSALKLFEDI------------------------- 252
D N +ID Y + G + +A +LFE +
Sbjct: 196 DDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVA 255
Query: 253 -----SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH- 306
++ ++ +SW+++I G+ G A+E F +MQK ++P + SVL+AC++
Sbjct: 256 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 315
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G L G LVDM + GR++ A ++ + ++ +V
Sbjct: 316 GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK--EVSSWNA 373
Query: 347 LLGACSFHGNVE 358
++G + HG E
Sbjct: 374 MIGGLAMHGRAE 385
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 233/438 (53%), Gaps = 50/438 (11%)
Query: 20 SLLHHTLLFNTLLH-FYSLADSPKKAFLLYKQLQ---QIYTHS-HSPLRPLFDSFTYSFL 74
SL H LF + H + ++ KAF+L +L QIY+ + L P D++T ++
Sbjct: 54 SLPHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQMLENGLYP--DNYTLPYV 111
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C L +LG H K+GF ++V L+ MY S G ++ + +FDE+P
Sbjct: 112 LKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTA 171
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT------------RMNRSN 182
V+W VMI+G K G++E AR LF+E P ++ W I+ GY R+ +S
Sbjct: 172 VSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQST 231
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
G EP E ++++L A GA+ +H Y ++ G + +R+S LID YAKCG +
Sbjct: 232 G--LEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLG-HPLSVRLSTGLIDMYAKCGSL 288
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A KLF+ +S +++ + W ++ISG AM+G G A+ F M+K G+KP+ +TF+++
Sbjct: 289 DIAKKLFDGMS--QRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFT 346
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP---SE 337
ACS+ G+ HYGC+VD+LGRAG L++A+++ L +P S
Sbjct: 347 ACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSP 406
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
+ R LL AC HG E+ E +++ +E + G YVL+ N+ A G+ R+
Sbjct: 407 TEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLEH-HSGAYVLLSNLYAAAGKQDHVRRI 465
Query: 398 RRVMDERNALKFPGRSLV 415
R++M+ R K PG S V
Sbjct: 466 RKMMENRGVDKAPGCSSV 483
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 120/312 (38%), Gaps = 87/312 (27%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + KLF ++ + N MI V G+L ++ +M
Sbjct: 53 GSLPHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQM---------------- 96
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLI 233
NG P T+ VL A +++C L HG K GF FDI V N LI
Sbjct: 97 ---LENG--LYPDNYTLPYVLKAC---AGLQSCHLGESAHGQSVKLGF-WFDIFVGNTLI 147
Query: 234 DTYAKCG------CIF-------------------------SALKLFEDISVERKNLVSW 262
Y+ G CIF +A LF++ ++ + + W
Sbjct: 148 AMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGI--W 205
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGC-------- 313
SIISG+ + K ++ F MQ GL+P+ +S+L AC+H G + G
Sbjct: 206 GSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQ 265
Query: 314 ------------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
L+DM + G L+ A+K+ G+ D + ++ + +G+ G+
Sbjct: 266 LGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQR--DTICWNAMISGMAMNGD---GD 320
Query: 362 RVTRKVLEMERG 373
R EME+
Sbjct: 321 NALRLFSEMEKA 332
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 192/336 (57%), Gaps = 37/336 (11%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY G L + K+FDE+P +N++ W M++G V +GEL+ AR LFE P ++VV WT +
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 172 LDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
++GY + N + A +P + ++A+L Q GA+ IHGY +++G
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGI 120
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
D V LI+ Y+KCGCI AL++F + K+ +WTSII G AM+G A+E
Sbjct: 121 -PVDAVVGTSLIEMYSKCGCIEKALRIF--CGLREKDTATWTSIICGLAMNGKTSKALEL 177
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
F +M++V P+ VTF+ VL+ACSHGGL HYGCL+D+LG
Sbjct: 178 FSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLG 237
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRI--LLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
RAG+L++AE++ I + +++V LL AC + NV+MGERV +++++E +
Sbjct: 238 RAGQLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSV 297
Query: 378 YVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ L+ NI A GR+VD R+RR M + K PG S
Sbjct: 298 HTLLANIYASAGRWVDVNRVRREMKDLGVKKVPGCS 333
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 47/246 (19%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
L S + +L+ +++ Y + +A L++++Q ++P D F L+
Sbjct: 45 LFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQI------QRVKP--DKFVLVALL 96
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
C + GT +H I + G V T+L+ MY G ++ + ++F L E++
Sbjct: 97 TGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTA 156
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
TW +I GL G+ A LF +M + P E+T +
Sbjct: 157 TWTSIICGLAMNGKTSKALELFSKMKQVEAI---------------------PDEVTFIG 195
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGF-----NAFDIRVS----NCLIDTYAKCGCIFSAL 246
VL A G V E R F + ++I CLID + G + A
Sbjct: 196 VLSACSHGGLVE---------EGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAE 246
Query: 247 KLFEDI 252
+L + I
Sbjct: 247 ELIKKI 252
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 225/422 (53%), Gaps = 38/422 (9%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L N ++ Y+ + A +Y ++ + T S D FTY FL++ C + L
Sbjct: 79 LHNAMIKAYAQNHQHRDAVAVYIRMLRCPT-SPPDGHAGGDRFTYPFLLKACGGTAALEL 137
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+H + + G S V +L+ MY G L + K+FDE+ ER++V+WN++I+ +
Sbjct: 138 GKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHAR 197
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAV 196
G++ A +LF MP + +V+WT ++ GYT + GA EP +++I+AV
Sbjct: 198 LGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAV 257
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
LPA Q G + + I+ Y ++ G + N L++ YAKCGCI AL+LF+ ++
Sbjct: 258 LPACAQLGTLELGRWIYAYCKRHGM-LTSTHICNALMEMYAKCGCIDQALQLFDGMA--D 314
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGL------ 309
K+++SW+++I G A HG AV F M+K G ++PN +TF+ +L+ACS+ GL
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLS 374
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR+G++ +A + +P D V LL AC
Sbjct: 375 HFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVP-ADAKVWGSLLSACRS 433
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG+V+ +++E+E + G+ V++ N+ A R+ D R+ + R+ K PG S
Sbjct: 434 HGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCS 493
Query: 414 LV 415
L+
Sbjct: 494 LI 495
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 220/412 (53%), Gaps = 32/412 (7%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
++ +F L+ +S +P ++ +LY ++ +S F+ +++ C L
Sbjct: 71 NSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV------EFSIPSVLKACGKLLA 124
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+ G Q+H + K +V ++V MY+ G ++ + ++FD +P R++V+WN MI G
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+K GE+E A LF+EMP R++VS ++DGY + S G P I++VL AI
Sbjct: 185 YLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLG--LRPDGPAIVSVLSAIADL 242
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
G V + +H Y + + LID Y+KCG I +A +F IS R+N+ W
Sbjct: 243 GFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS-HRRNIGDWN 301
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
S+ISG A+HG+ + A++ F M+++ ++PN +TFL +L+ CSHGGL
Sbjct: 302 SMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEK 361
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HYGC++D+ GRAGRLE A + +P E D++ + +L A HG++E+G+
Sbjct: 362 YKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFE-ADLLAWKAILSASMKHGHIEIGK 420
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ +E+ + YVL+ NI A GR+ D ++R +M +R K G S
Sbjct: 421 SAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 472
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 230/436 (52%), Gaps = 55/436 (12%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ L+ ++ Y+ PK AFLLY+ + + +RP ++F Y ++R+C +
Sbjct: 106 NVFLYTAMITAYASYPDPKAAFLLYRNMVR-----RGAIRP--NNFIYPHVLRSCPDVLG 158
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELPERNLVTWNVMIT 142
N +H + K GF + V TA+V+ Y + + ++FDE+ ER +V+W MI+
Sbjct: 159 SNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMIS 218
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDG-------------YTRM------NRSNG 183
G + G + A LFE MP R+V +W ++ G + RM +N
Sbjct: 219 GYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNND 278
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+P++ T+ + L A G + + IHGY K + D +SN L+D Y KCG +
Sbjct: 279 RENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKT-YPGQDSFISNALLDMYGKCGNLK 337
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVL 301
A ++F+ I++ KNL SW S+I+ A+HG +A++ F + G +KPN VTF+ VL
Sbjct: 338 VARRVFDMITL--KNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVL 395
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
NAC+HGGL H+GCL+D+LGRAGR E+A ++ G+ E
Sbjct: 396 NACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIE-P 454
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D VV LL AC HG ++ E +K++EM+ NGG +++ NI A G++ + ++RR
Sbjct: 455 DEVVWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRR 514
Query: 400 VMDERNALKFPGRSLV 415
++ E+NA K PG S +
Sbjct: 515 LLKEKNAYKTPGCSWI 530
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 47/249 (18%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD L N+ + MIT + + + A L+ M R + + + + +
Sbjct: 98 IFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVL 157
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGY-------GEKRGFNAFDIRVS------NC 231
+ +++ VL + + V ++ Y G R FD +
Sbjct: 158 GSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSAR--QMFDEMLERTVVSWTA 215
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL- 290
+I YA+ G SA++LFE S+ +++ +W ++I+G A +G A+ F+RM + L
Sbjct: 216 MISGYARLGNFDSAIELFE--SMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALE 273
Query: 291 --------KPNRVTFLSVLNACSHGG-LHYG--------------------CLVDMLGRA 321
KPN+ T S L+AC H G LH G L+DM G+
Sbjct: 274 GNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKC 333
Query: 322 GRLEQAEKI 330
G L+ A ++
Sbjct: 334 GNLKVARRV 342
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 224/409 (54%), Gaps = 53/409 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + + +P AF YK + S R + D+ T SF+++ C +
Sbjct: 73 WNAIIRGFIQSPNPTNAFAWYKSMI-------SKSRKV-DALTCSFVLKACARVLARLES 124
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H I + GF + + T L+++Y +G + + K+FDE+ +R++ +WN +I+G +
Sbjct: 125 IQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQG 184
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ A SLF+ M +DG+ +P+EI++L L A Q G +
Sbjct: 185 SKPTEALSLFKRME----------IDGF-----------KPNEISVLGALSACAQLGDFK 223
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IHGY + F+ + +V N +ID YAKCG + A +FE +S RK++V+W ++I
Sbjct: 224 EGEKIHGYIKVERFD-MNAQVCNVVIDMYAKCGFVDKAYLVFESMSC-RKDIVTWNTMIM 281
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
FAMHG G A+E FE+M + G+ P+ V++L+VL AC+HGGL
Sbjct: 282 AFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKP 341
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYG +VD+LGRAGRL +A I +P+ + D+V+ + LLGA H NVE+ E V+RK
Sbjct: 342 NVKHYGSVVDLLGRAGRLHEAYDIVNSMPT-VPDIVLWQTLLGASRTHRNVEIAETVSRK 400
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++EM + GD+VL+ N+ A R+ D R+R M R+ K PG S +
Sbjct: 401 LVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYI 449
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/451 (32%), Positives = 221/451 (49%), Gaps = 77/451 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+ N ++ Y+ A +P AF +Y+++ + S LRP D+FT+ +L+R C L
Sbjct: 65 FMHNAMVRGYAHAGAPGDAFAVYRRMTEA-----SRLRP--DAFTFCYLLRACAGLPGSR 117
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS---------------------- 123
G Q+H + K+GF YV AL+NM+ G L+ +S
Sbjct: 118 AGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHA 177
Query: 124 ---------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
K+FDE +++V WNVM+ K GE+E AR LF+ P ++VVSW I+ G
Sbjct: 178 ARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITG 237
Query: 175 YTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG--YGEKRGFN 222
Y + A P E TI+++L G + ++IH + E+R +
Sbjct: 238 YAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPW- 296
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
I V N L+ YAKCG + +A++ F +++ ++ +W S+I G A HG + +V F
Sbjct: 297 -ISIVVGNALVSMYAKCGDLHTAVEGFN--TMKDTDVWTWNSVIGGLAFHGQAEQSVRFF 353
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
++M + + PN ++FL VL ACSH GL HY C+VDMLGR
Sbjct: 354 KKMLEKRIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGR 413
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG L++A I + E + VV R LLGAC HGN+ +G+ V K+L M DYVL
Sbjct: 414 AGLLDEAYAIVSNMRCEPS-AVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVL 472
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPG 411
+ I A G ++ E RR MD R K G
Sbjct: 473 LSGIYASSGEWLGVETERRSMDRRGIRKAAG 503
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 116/316 (36%), Gaps = 98/316 (31%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
G + YAR +F+ +P ++ ++ GY A P T +
Sbjct: 47 GRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYL 106
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE------ 250
L A R + +HG K GF D V N LI+ +AKCG + A L +
Sbjct: 107 LRACAGLPGSRAGRQVHGAVVKLGFLK-DAYVRNALINMFAKCGDLRVASVLLDEAGEGD 165
Query: 251 ---------------DISVERK-------------------------------------- 257
D++ RK
Sbjct: 166 VVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPE 225
Query: 258 -NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
++VSW +II+G+A GM K A+E F+ M+ G P+ T +S+L+ C++ GL
Sbjct: 226 KDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMI 285
Query: 310 HY---------------GCLVDMLGRAGRLEQAEKIALGIPS-EITDVVVRRILLGACSF 353
H+ LV M + G L A + G + + TDV ++G +F
Sbjct: 286 HHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVE---GFNTMKDTDVWTWNSVIGGLAF 342
Query: 354 HGNVEMGERVTRKVLE 369
HG E R +K+LE
Sbjct: 343 HGQAEQSVRFFKKMLE 358
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/426 (32%), Positives = 226/426 (53%), Gaps = 49/426 (11%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T +NT++ ++L SP A +++ +++++ S P D+ T+ F ++ C L
Sbjct: 94 TFGYNTMIRAHTLLSSPLAALVIFVRMRRL---SVPP-----DTHTFPFCLKACSLLPAL 145
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+L LH+ K GF + ++V L+++Y L + ++F+E +++V++N +I G
Sbjct: 146 SLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGF 205
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-----------MNRSNGASTEPSEITI 193
+K G+ + AR LF++MP R+ VSW +L GY + NR ++ P I +
Sbjct: 206 IKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIAL 265
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
++ L A Q G + + IH Y ++ NAF +S L+D YAKCGCI +A ++FE
Sbjct: 266 VSALSACAQLGELEQGKSIHVYIKQNRIPINAF---LSTGLVDLYAKCGCIETAREIFE- 321
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
S KNL +W +++ G MHG G ++ F RM + G+KP+ V+FL +L C H GL
Sbjct: 322 -SSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVC 380
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+ D+LGRAG + +A ++ +P DV V +LG
Sbjct: 381 EARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMG-GDVFVWGGVLG 439
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
C HGNVE+ E+ V+ + + G Y +M +I A GR+ D R+RR+M R K
Sbjct: 440 GCRIHGNVEIAEKAAENVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKN 499
Query: 410 PGRSLV 415
PG SLV
Sbjct: 500 PGCSLV 505
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 36/379 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T ++ +C L +LG + H I + G + V + AL++MY+ G L+ + KLF
Sbjct: 207 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 266
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D + + +V+W M+ G + G L+ A LF+EMP ++VV W ++ GY NR A
Sbjct: 267 DSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALA 326
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ P E+T+++ L A Q GA+ IH Y EK + ++ + LID Y
Sbjct: 327 LFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVALGTALIDMY 385
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG I A+++F+++ +N ++WT+IISG A+HG A+ F M + P+ VT
Sbjct: 386 AKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 443
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FL +L+AC HGGL HY C+VD+LGRAG LE+AE++ +
Sbjct: 444 FLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSM 503
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E D VV L AC HGNV MGER K+L+M+ + G YVL+ N+ + +A
Sbjct: 504 PIE-ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEA 562
Query: 395 ERLRRVMDERNALKFPGRS 413
+ R++M +R K PG S
Sbjct: 563 GKARKLMRQRGVEKTPGCS 581
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 177/385 (45%), Gaps = 85/385 (22%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T +N + + +++P++A +LYK++ Q +P D++TY L + C LS
Sbjct: 70 NTFSWNVAIRGFLDSENPREAVVLYKRVLQC-----DGTKP--DNYTYPLLFKACARLSL 122
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+G+++ + +GF S ++V+ A++++ VS G L + K+FD+ R+LV+WN MI G
Sbjct: 123 IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 182
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V+ G A + + EM + +P E+T++ V+ + Q
Sbjct: 183 YVRRGWAYEALNFYREMKVEGI---------------------KPDEVTMIGVVSSCAQL 221
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
+ + H Y E+ G + ++N L+D Y KCG + SA KLF+ S+ K +VSWT
Sbjct: 222 EDLDLGRESHCYIEENGLK-LTVPLANALMDMYMKCGNLESARKLFD--SMTNKTMVSWT 278
Query: 264 SIISGFAMHGM-------------------------------GKAAVENFERMQKVGLKP 292
+++ G+A G+ GK A+ F MQ + + P
Sbjct: 279 TMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINP 338
Query: 293 NRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIA 331
+ VT +S L+ACS G L G L+DM + G++ +A ++
Sbjct: 339 DEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVF 398
Query: 332 LGIPSEITDVVVRRILLGACSFHGN 356
+P + + ++ + HGN
Sbjct: 399 QELPGR--NSLTWTAIISGLALHGN 421
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 39/226 (17%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWT----GILDG---------YTRMNRSNGAS 185
+ + +W +L+Y ++ N SW G LD Y R+ + +G
Sbjct: 45 IAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDG-- 102
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+P T + A + +R I G+ GF++ DI VSN +I CG + A
Sbjct: 103 TKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS-DIFVSNAVIHLLVSCGDLDGA 161
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
K+F+ V ++LVSW S+I+G+ G A+ + M+ G+KP+ VT + V+++C+
Sbjct: 162 RKMFDKSCV--RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCA 219
Query: 306 H----------------GGLHY-----GCLVDMLGRAGRLEQAEKI 330
GL L+DM + G LE A K+
Sbjct: 220 QLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKL 265
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 151/500 (30%), Positives = 239/500 (47%), Gaps = 111/500 (22%)
Query: 15 LLTTNSLLHH-----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSF 69
L ++ HH L+N+L+ S + +P +A LY + Q S L+P D
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQ------SGLKP--DHM 196
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS---------HVYVN-------------- 106
TY F+I+ C S G +H + K GF+ H+Y N
Sbjct: 197 TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 256
Query: 107 ---------------------------------------TALVNMYVSLGFLKDSSKLFD 127
++N Y +G + ++ +LFD
Sbjct: 257 SARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFD 316
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+PERNLV+WN M+ G VK G +E A LF EMPCR+VVSW +L Y + + N A
Sbjct: 317 EMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 376
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+P+E T++++L A GA+ +H Y I V L+D YA
Sbjct: 377 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI-VGTALVDMYA 435
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG I A ++F ++E K++++W +II+G A+HG K A + F+ M++ G++PN +TF
Sbjct: 436 KCGKISLATQVFN--AMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 493
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+++L+ACSH G+ HYGC++D+L RAG LE+A ++ +P
Sbjct: 494 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 553
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
E + LLG C HGN E+GE V ++++ ++ + G Y+L+ NI A ++ DA
Sbjct: 554 MEPNPSAL-GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDAR 612
Query: 396 RLRRVMDERNALKFPGRSLV 415
++R +M K PG S++
Sbjct: 613 KVRNLMKVNGISKVPGVSVI 632
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 224/423 (52%), Gaps = 46/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N L+ Y + P ++ +LY L S LRP T++F+ + S
Sbjct: 47 TFLYNKLIQAYYVHHQPHESIVLYNLL------SFDGLRP--SHHTFNFIFAASASFSSA 98
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LH+ + GF+S + T L+ Y LG L + ++FDE+ +R++ WN MITG
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 158
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITI 193
+ G+++ A LF+ MP +NV SWT ++ G+++ + A S +P+ IT+
Sbjct: 159 QRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITV 218
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDI 252
++VLPA G + + + GY + GF FD I V N I+ Y+KCG I A +LFE++
Sbjct: 219 VSVLPACANLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+R NL SW S+I A HG A+ F +M + G KP+ VTF+ +L AC HGG+
Sbjct: 277 GNQR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVK 335
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC++D+LGR G+L++A + +P + D VV LLGA
Sbjct: 336 GQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGTLLGA 394
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
CSFHGNVE+ E + + ++E N G+ V+M NI A ++ R+R++M + K
Sbjct: 395 CSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAA 454
Query: 411 GRS 413
G S
Sbjct: 455 GYS 457
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 226/429 (52%), Gaps = 50/429 (11%)
Query: 23 HH----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC 78
HH T L+N L+ Y + P ++ +LY L S LRP T++F+
Sbjct: 34 HHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLL------SFDGLRP--SHHTFNFIFAAS 85
Query: 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
+ S LH+ + GF+S + T L+ Y LG L + ++FDE+ +R++ WN
Sbjct: 86 ASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWN 145
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STE 187
MITG + G+++ A LF+ MP +NV SWT ++ G+++ + A S +
Sbjct: 146 AMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVK 205
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSAL 246
P+ IT+++VLPA G + + + GY + GF FD I V N I+ Y+KCG I A
Sbjct: 206 PNHITVVSVLPACANLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAK 263
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+LFE++ +R NL SW S+I A HG A+ F +M + G KP+ VTF+ +L AC H
Sbjct: 264 RLFEELGNQR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 322
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GG+ HYGC++D+LGR G+L++A + +P + D VV
Sbjct: 323 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVW 381
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLGACSFHGNVE+ E + + ++E N G+ V+M NI A ++ R+R++M +
Sbjct: 382 GTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKE 441
Query: 405 NALKFPGRS 413
K G S
Sbjct: 442 TMTKAAGYS 450
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 229/439 (52%), Gaps = 49/439 (11%)
Query: 14 HLLTTNSLLHHTLLFNTLLHFYSLADSP-KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
H++ L + ++ + S D+ KA +LYKQ+ + P + T+
Sbjct: 79 HMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQM---FCKDIVP-----NCLTFP 130
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
FL++ C G +H + K GF VYV +L+++Y++ G L ++ K+FDE+
Sbjct: 131 FLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVT 190
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG-------------YTRMN 179
++VTWN M+ G ++ G L+ A LF +M RN+++W I+ G + M
Sbjct: 191 DVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQ 250
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+ +P +ITI +VL A Q GA+ + + +HGY + G D+ + L++ Y KC
Sbjct: 251 ILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIEC-DVVIGTALVNMYGKC 309
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + A ++FE++ K+ +WT +IS FA+HG+G A F M+K G+KPN VTF+
Sbjct: 310 GDVQKAFEIFEEMP--EKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVG 367
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
+L+AC+H GL HY C+VD+L RA +++E + +P +
Sbjct: 368 LLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMK 427
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
DV V LLG C HGNVE+GE+V ++++E N YV +I A G + A+R+
Sbjct: 428 -PDVYVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRI 486
Query: 398 RRVMDE-RNALKFPGRSLV 415
R +M E R K PG S++
Sbjct: 487 RNIMKEKRIEKKIPGCSMI 505
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 233/454 (51%), Gaps = 59/454 (12%)
Query: 7 VTTRIHSHLLTTNSLLHH------------TLLFNTLLHFYSLADSPKKAFLLYKQLQQI 54
+TT+ S ++ SLLH+ T +NT++ ++L P A + Q++++
Sbjct: 61 LTTKAKSK--SSTSLLHYAKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRL 118
Query: 55 YTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV 114
PL DS ++ F ++ C L LH + K GF S +YV +L++ Y+
Sbjct: 119 SV-------PL-DSHSFPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYM 170
Query: 115 SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
D+ K+FDE P+R++V++NV+I G VK G++ AR LF+ MP R+ VSW I+ G
Sbjct: 171 VSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAG 230
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ + A P + +++ L A Q G + + IH Y E+
Sbjct: 231 CAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKV- 289
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
D +S L+D YAKCGC+ ALK+F+ S KNL +W +++ G AMHG G+ +E F R
Sbjct: 290 DTFLSTGLVDFYAKCGCVDIALKIFD--SSSDKNLFTWNAMLVGLAMHGYGELLLEYFSR 347
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M + G+KP+ ++ L VL CSH GL HYGC+ D+LGRAG
Sbjct: 348 MIEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAG 407
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
+++ ++ +P D+ V LLG C HG+VE+ E+ + ++E++ +GG Y ++
Sbjct: 408 LIKKVMEMIKDMPRG-GDMSVWSGLLGGCRIHGDVEIAEKAAKHLMELKPDDGGVYSILA 466
Query: 383 NILAGVGRYVDAERLRRVMDE-RNALKFPGRSLV 415
N+ A R+ D +RR + R K G SL+
Sbjct: 467 NVYANAERWEDVMNIRRSLSSNRVVTKIAGFSLI 500
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 66/429 (15%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
K + IY + + + FTY L + C G Q+H + K G S V++ +A
Sbjct: 113 KLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSA 172
Query: 109 LVNMYVSLGFLKDSSK------------------------------LFDELPERNLVTWN 138
++MY S G L+D+ K LF ++P +N+ +WN
Sbjct: 173 GIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWN 232
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
VMI GL K G L AR LF+EM R+ +SW+ ++DGY R A T P
Sbjct: 233 VMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRP 292
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ +VL A GA+ + +H Y KR D + L+D YAKCG + ++
Sbjct: 293 GRFILSSVLAACSNIGAIDQGRWVHAY-LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
FE++ + + + +W ++I G A+HG + A+E F ++Q+ +KPN +T + VL AC+H G
Sbjct: 352 FEEM--KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
HYGC+VD+LGR+G +AE + +P + + V
Sbjct: 410 FVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMK-PNAAVWGA 468
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LLGAC HGN ++ ERV + +LE+E N G YVL+ NI A VGR+ D ++R++M +R
Sbjct: 469 LLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI 528
Query: 407 LKFPGRSLV 415
PG S+V
Sbjct: 529 KTVPGVSIV 537
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 150/387 (38%), Gaps = 117/387 (30%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGF--LKD 121
LFDS ++ +L Y TQLH ++ + G FQ H YV+ AL+ Y + F
Sbjct: 37 LFDS-------KSITSLQYL---TQLHGLVLRSGHFQDH-YVSGALLKCYANPHFSNFDF 85
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+F +P N+ WN++I G ++ +L A + M ++D
Sbjct: 86 ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM----------VID-------- 127
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG--------------FNAF--- 224
P++ T + A AV+ + IHG+ K G + +F
Sbjct: 128 ----ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRL 183
Query: 225 ------------DIRVSNCLIDTYAKCGCIFSALKLFEDISVE----------------- 255
D+ N +ID Y KCG + +A LF + V+
Sbjct: 184 EDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGN 243
Query: 256 ------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
++ +SW+S++ G+ G K A+E F++MQ+ +P R SVL A
Sbjct: 244 LGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAA 303
Query: 304 CSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
CS+ G + G L+DM + GRL+ ++ + ++
Sbjct: 304 CSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER--EIF 361
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLE 369
++G + HG E + K+ E
Sbjct: 362 TWNAMIGGLAIHGRAEDALELFSKLQE 388
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 222/418 (53%), Gaps = 44/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ YS + K+ L+ + + D+ T +I C L
Sbjct: 185 WNTLICGYSQYNKYKEVLRLFDAMTAANIKA--------DAVTMVKIILACSHLGDWEFA 236
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ I + + VY+ L++MY + + +FD + ERN+V+WN ++ G K
Sbjct: 237 DSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKV 296
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
G L AR LF+ MP R+V+SWT ++ GY++ ++ + A +P ++T+ +VL
Sbjct: 297 GNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVL 356
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A G + +H Y + G A DI V N LID Y KCG + AL++F ++ K
Sbjct: 357 SACAHLGKLDVGWAVHHYIRRHGVQA-DIYVGNSLIDMYCKCGMVEKALEVFH--RMKDK 413
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ VSWTS+ISG A++G +A++ F +M + G++P TF+ +L AC+H GL
Sbjct: 414 DSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYF 473
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+L R+G +++A + +P + DVVV RILL AC HG
Sbjct: 474 ESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPI-VPDVVVWRILLSACKLHG 532
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
NV + E T+++LE++ + G+YVL+ N AGV R+ DA ++R +M++ + K G S
Sbjct: 533 NVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSS 590
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 181/383 (47%), Gaps = 61/383 (15%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSP-KKAFLLYKQLQ----QIYTH- 57
S + + +H+HL+ T L L + ++ YSL+ + KA L++ Q++ ++ H
Sbjct: 29 STDTSKELHAHLIRTQ-LHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHM 87
Query: 58 ------SHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99
S P+ + ++ T FL + C +S G ++H K+GF
Sbjct: 88 IRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGF 147
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
+S+++V+ AL++MY G L + K+FD + +R+LV+WN +I G ++ + + LF+
Sbjct: 148 ESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDA 207
Query: 160 MPCRNV----VSWTGILDGYTRMNRSNGASTEPS-------EITILAVLPAIWQNGAVRN 208
M N+ V+ I+ + + A + EI + I G
Sbjct: 208 MTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSL 267
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+L G ++ +I N L+ +AK G + +A KLF+++ +++++SWTS+I+G
Sbjct: 268 AELAQGVFDR--MRERNIVSWNALVMGHAKVGNLTAARKLFDNMP--KRDVISWTSMITG 323
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------HY--------- 311
++ AV+ F+ M +KP++VT SVL+AC+H G HY
Sbjct: 324 YSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQAD 383
Query: 312 ----GCLVDMLGRAGRLEQAEKI 330
L+DM + G +E+A ++
Sbjct: 384 IYVGNSLIDMYCKCGMVEKALEV 406
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 222/412 (53%), Gaps = 45/412 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
LL+NTL+ + P AF ++ ++Q + D+FTY FL++ C +
Sbjct: 81 LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCA--------DNFTYPFLLKACSGKVWVR 132
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ +HA + K+GF ++V +L++ Y LG L ++ +LFDE+PER+ V+WN ++ G V
Sbjct: 133 VVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYV 192
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K GE+ A LFE+MP RNVVSW+ + G + +G T++++L A +G
Sbjct: 193 KAGEMNAAFELFEKMPARNVVSWSTMEAG---LKFDDG--------TVISILSACAVSGL 241
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H E+ F VSN LID YAKCG + +AL +F + RK++VSW +I
Sbjct: 242 LGLGKRVHASIERTRFKC-STPVSNALIDMYAKCGSLENALSIFHGMV--RKDVVSWNAI 298
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I G AMHG G+ A++ F RM+ G P++VTF+ VL AC+H G
Sbjct: 299 IQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYG 358
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HYGC+VD+LGR GRL++A ++ +P E + ++ LLGAC H + E V
Sbjct: 359 VPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLE-PNAIIWGTLLGACRMHSATGLAEEV 417
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++++ E + G+ ++ NI A G + + +R M + K G S +
Sbjct: 418 FDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSI 469
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 225/455 (49%), Gaps = 75/455 (16%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ +FN ++ + P KA Y ++ + H+ RP + FTY L + C
Sbjct: 94 NVFVFNIIIKGCLQNNEPCKAICCYYKM--MIAHA----RP--NKFTYPTLFKACTAAEA 145
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG-------------------------- 117
G Q+HA + K G V++ +A + MY S G
Sbjct: 146 AEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDG 205
Query: 118 FLK-----DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
+LK + +LF + ++N+ +WNVM++G+ K G +E AR LF EM +N +SW+ ++
Sbjct: 206 YLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMI 265
Query: 173 DGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
DGY + N P + + +VL A GA+ + IH Y N
Sbjct: 266 DGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNS-N 324
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+FD + L+D YAKCG + A +FE + E+K + +W ++I G MHG + A+E F
Sbjct: 325 SFDAVLGTALVDMYAKCGRLDMAWDVFEKM--EKKEVFTWNAMICGLGMHGRAEDAIELF 382
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
+MQK +PN +T L VL+AC+H G+ HYGC+VD+LGR
Sbjct: 383 FKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGR 442
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG L +AE++ +P E + V LLGAC HG+VE+GERV + +LE+E N G Y L
Sbjct: 443 AGLLGEAEEVMYSMPMEPS-AAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYAL 501
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ NI A GR+ D +R++M ER G S++
Sbjct: 502 LSNIYARAGRWDDVANVRKLMKERGVKTSTGISMI 536
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 139/343 (40%), Gaps = 87/343 (25%)
Query: 89 QLHAVISKVG-FQSHVYVNTALVNMYVSLGF--LKDSSKLFDELPERNLVTWNVMITGLV 145
Q+HAV + G FQ H YV+ LV Y + F L + K+F+ +P N+ +N++I G +
Sbjct: 48 QVHAVALRTGHFQDH-YVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------SNGASTEPSEITILAVLPA 199
+ E PC+ + + ++ + R N+ + + + V
Sbjct: 107 QNNE-----------PCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAH 155
Query: 200 IWQNG-----AVRNC--QLIHGYGEKRGFNAF-------DIRVSNCLIDTYAKCGCIFSA 245
+ + G +R+ Q+ +GE G D+ N +ID Y KCG + +A
Sbjct: 156 VIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAA 215
Query: 246 LKLF---EDISV--------------------------ERKNLVSWTSIISGFAMHGMGK 276
+LF ED +V + KN +SW+++I G+ G K
Sbjct: 216 KELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYK 275
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLV 315
A+E F MQ+ ++P + SVL AC++ G L G LV
Sbjct: 276 EALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALV 335
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
DM + GRL+ A + + E +V ++ HG E
Sbjct: 336 DMYAKCGRLDMAWDVFEKM--EKKEVFTWNAMICGLGMHGRAE 376
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 208/382 (54%), Gaps = 36/382 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D ++ C LS G +H ++ ++G +S+V + AL++MY G + D+ KL
Sbjct: 302 LDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKL 361
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------- 177
F+ + ++WN MI+G +K G +E AR+LF+ MP +++VSW+ ++ GY +
Sbjct: 362 FNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETL 421
Query: 178 --MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+ P E +++V+ A A+ + +H Y K G ++ + L+D
Sbjct: 422 ALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKV-NVILGTTLLDM 480
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y KCGC+ +AL++F +E K + SW ++I G A++G+ + +++ F M+ G+ PN +
Sbjct: 481 YMKCGCVENALEVFN--GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEI 538
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ VL AC H GL HYGC+VD+LGRAG L +AEK+
Sbjct: 539 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 598
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P DV LLGAC HG+ EMGERV RK++E++ + G +VL+ NI A G + D
Sbjct: 599 MPMA-PDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWED 657
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+R +M ++ +K PG SL+
Sbjct: 658 VLEVRGMMKQQGVVKTPGCSLI 679
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 163/351 (46%), Gaps = 79/351 (22%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ Y ++S +KA LLYK + + + + P D++TY +++ C
Sbjct: 107 FMWNTMMRAYIQSNSAEKALLLYKLMVK------NNVGP--DNYTYPLVVQACAVRLLEF 158
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G ++H + KVGF S VYV L+NMY G ++D+ KLFDE P + V+WN ++ G V
Sbjct: 159 GGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYV 218
Query: 146 KWGELEYARSLFEEMPCRNV-------------------------------VSWTGILDG 174
K G++E A+ +F++MP RN+ VSW+ ++ G
Sbjct: 219 KKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISG 278
Query: 175 YTRMN----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
Y + N E+ +++VL A V+ ++IHG + G ++
Sbjct: 279 YEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESY 338
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDI-------------------SVER--------- 256
+ + N LI Y+ G I A KLF SVE+
Sbjct: 339 -VNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMP 397
Query: 257 -KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K++VSW+++ISG+A H + F MQ ++P+ +SV++AC+H
Sbjct: 398 EKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTH 448
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 55/251 (21%)
Query: 89 QLHAVISKV---GFQSHVYVNTALVNMYVSLGF--LKDSSKLFDELPERNLVTWNVMITG 143
Q + ++S++ GF S + + L+ F L S ++FD + N WN M+
Sbjct: 56 QFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRA 115
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
++ E A L++ M NV D YT P + Q
Sbjct: 116 YIQSNSAEKALLLYKLMVKNNVGP-----DNYT--------------------YPLVVQA 150
Query: 204 GAVRNCQL----IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
AVR + IH + K GF++ D+ V N LI+ YA CG + A KLF++ V +
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDS-DVYVQNTLINMYAVCGNMRDARKLFDESPV--LDS 207
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG 319
VSW SI++G+ G + A F++M P R S ++ +LG
Sbjct: 208 VSWNSILAGYVKKGDVEEAKLIFDQM------PQRNIVAS------------NSMIVLLG 249
Query: 320 RAGRLEQAEKI 330
+ G++ +A K+
Sbjct: 250 KMGQVMEAWKL 260
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 233/467 (49%), Gaps = 78/467 (16%)
Query: 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQL--QQIYTHSHSPLRPLFDSFTYS 72
L T + ++ ++ T++ Y+ +P++AF Y ++ Q Y + + FT++
Sbjct: 88 LFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYP--------NDFTFT 139
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL----------------------- 109
++ C + G Q HA + K F+ V+ +L
Sbjct: 140 YVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEG 199
Query: 110 ---------VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
+N YV G L ++ +LFDE+PER++V+W +M+ G G L A LF+EM
Sbjct: 200 PDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEM 259
Query: 161 PCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
P RN+VSW+ ++ GY ++ A + E+ + +L A + GA+ +
Sbjct: 260 PKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGR 319
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
+H Y +K G D +S LID Y+KCG I A K+F++ K + W+S+I G A
Sbjct: 320 WLHMYIDKHGIKV-DAHLSTALIDMYSKCGRIDMAWKVFQETG--DKKVFVWSSMIGGLA 376
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------------- 309
MH G+ A+E F +M + G++P+ +T++++L AC+H GL
Sbjct: 377 MHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRM 436
Query: 310 -HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
HYGC+VD+LGRAG L A ++ +P + D + R LL AC H NVE+GE+V R ++
Sbjct: 437 QHYGCIVDLLGRAGLLHDAFRVVETMPVK-ADPAIWRALLSACKLHRNVELGEQVGRILI 495
Query: 369 EMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ME N +YVL N+ A V R+ + +LRR M R K PG S +
Sbjct: 496 KMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSI 542
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/423 (34%), Positives = 227/423 (53%), Gaps = 54/423 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
F+ ++H + + +AF Y Q+ + P ++FT+S ++++C S G
Sbjct: 113 FSAIIHSHVQSRLFDRAFGYYSQMLS------CGVEP--NAFTFSSVLKSCSLES----G 160
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH K+G S +YV T LV++Y G + + +LFD++PER+LV+ M+T K
Sbjct: 161 KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKM 220
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEITILAVL 197
GEL+ ARSLFE M R+VV W ++ GY + N A P+E+T+LAVL
Sbjct: 221 GELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVL 280
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ + + IH Y E +G ++ V LID Y+KCG + A +F+ I K
Sbjct: 281 SACGQLGALESGRWIHSYIENKGIQ-INVHVGTALIDMYSKCGSLEDARLVFDRI--RDK 337
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++V+W S+I G+AMHG + A++ FE M + G KP +TF+ +L+AC HGGL
Sbjct: 338 DVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFF 397
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT---DVVVRRILLGACS 352
HYGC+V++LGRAG LE+ A G+ +T D V+ LLG C
Sbjct: 398 RLMRDKYGIEPKIEHYGCMVNLLGRAGHLEE----AYGLVKNMTIAADPVLWGTLLGCCR 453
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H N+++GE + + +++ + N G YVL+ N+ A G + ++R +M E K G
Sbjct: 454 LHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGC 513
Query: 413 SLV 415
S +
Sbjct: 514 SSI 516
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 80/318 (25%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+HA + + G + +N L Y +LG L S +F+ E N+ +++ +I V+
Sbjct: 65 QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI-WQNGAVR 207
+ A + +M V EP+ T +VL + ++G V
Sbjct: 125 LFDRAFGYYSQMLSCGV---------------------EPNAFTFSSVLKSCSLESGKVL 163
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--------------- 252
+CQ I K G + D+ V L+D YA+ G + A +LF+ +
Sbjct: 164 HCQAI-----KLGLGS-DLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCY 217
Query: 253 --------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
++ +++V W +I G+A G+ +++ F RM PN VT L
Sbjct: 218 SKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVL 277
Query: 299 SVLNACSHGG--------------------LHYG-CLVDMLGRAGRLEQAEKIALGIPSE 337
+VL+AC G +H G L+DM + G LE A + I +
Sbjct: 278 AVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDK 337
Query: 338 ITDVVVRRILLGACSFHG 355
DVV ++ + HG
Sbjct: 338 --DVVAWNSMIVGYAMHG 353
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 236/476 (49%), Gaps = 67/476 (14%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQL--------- 51
+P + N RIHSH+ + L ++ N L+ Y + + A + ++
Sbjct: 292 TPEALNRGRRIHSHI-SERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWS 350
Query: 52 -------QQIYTHSHSPLRPLF-------------DSFTYSFLIRTCVTLSYPNLGTQLH 91
Q Y S L +F + T+ +++ C G Q+H
Sbjct: 351 AMIAGYAQSGYQDKES-LDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH 409
Query: 92 AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELE 151
A ISKVGF+S + TA+ NMY G + ++ ++F ++ +N+V W ++T +K G+L
Sbjct: 410 AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLT 469
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIW 201
A +F EM RNVVSW ++ GY + ++ +P +TI+++L A
Sbjct: 470 SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACG 529
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A+ +L+H K G + D V+ LI Y+KCG + A +F+ IS ++ V+
Sbjct: 530 ALSALERGKLVHAEAVKLGLES-DTVVATSLIGMYSKCGEVTEARTVFDKIS--NRDTVA 586
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W ++++G+ HG+G AV+ F+RM K + PN +TF +V++AC GL
Sbjct: 587 WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQ 646
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HYGC+VD+LGRAGRL++AE+ +P E D+ V LLGAC H NV++
Sbjct: 647 EDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCE-PDISVWHALLGACKSHDNVQL 705
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E +L +E N YV + NI A GR+ D+ ++R+VMD++ K G S +
Sbjct: 706 AEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSI 761
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 187/394 (47%), Gaps = 54/394 (13%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
L + +++++ Y+ + P KAF +++++ + + P + T+ +++ C
Sbjct: 141 LRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD------ANIEP--NRITFLSILKACNNY 192
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
S ++H V+ G ++ V V TAL+ MY G + + ++F ++ ERN+V+W +I
Sbjct: 193 SMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAII 252
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+ +L A L+E+M A P+ +T +++L +
Sbjct: 253 QANAQHRKLNEAFELYEKML---------------------QAGISPNAVTFVSLLNSCN 291
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A+ + IH + +RG D+ V+N LI Y KC CI A + F+ +S +++++S
Sbjct: 292 TPEALNRGRRIHSHISERGLET-DVVVANALITMYCKCNCIQDARETFDRMS--KRDVIS 348
Query: 262 WTSIISGFAMHG-MGKAAVEN----FERMQKVGLKPNRVTFLSVLNACS-HGGLHYGCLV 315
W+++I+G+A G K +++ ERM++ G+ PN+VTF+S+L ACS HG L
Sbjct: 349 WSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALE----- 403
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
GR AE +G S D ++ + + G++ E+V K ME N
Sbjct: 404 -----QGRQIHAEISKVGFES---DRSLQTAIFNMYAKCGSIYEAEQVFSK---MENKNV 452
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+ + + G AE++ M RN + +
Sbjct: 453 VAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSW 486
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L +S TY +I C L G +H + ++G +Y+ +L+N Y G + +
Sbjct: 75 LVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQ 134
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F + R++VTW+ MI G A++ D + RM +N
Sbjct: 135 VFRRMTLRDVVTWSSMIAAYA--GNNHPAKA----------------FDTFERMKDAN-- 174
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP+ IT L++L A + + IH + G D+ V+ LI Y+KCG I
Sbjct: 175 -IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMET-DVAVATALITMYSKCGEISL 232
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F+ + + +N+VSWT+II A H A E +E+M + G+ PN VTF+S+LN+C
Sbjct: 233 ACEIFQKM--KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290
Query: 305 S 305
+
Sbjct: 291 N 291
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 225/411 (54%), Gaps = 50/411 (12%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP-NLGTQLHAVISKVGFQS 101
KA +LYKQ+ + + P ++ T+ FL++ C L Y +G +HA + K GF +
Sbjct: 111 KALMLYKQML------NKGIVP--NNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLN 162
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
V+V +L++++++ G K++ K+FDE+ R++V+WN M+ G ++ GE+E A +LF +M
Sbjct: 163 DVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMN 222
Query: 162 CRNVVSWTGILDGYTRMNR--------------SNGASTEPSEITILAVLPAIWQNGAVR 207
RN+++W I+ G + S +P +ITI +VL A G++
Sbjct: 223 GRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSID 282
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + +H Y K D+ + L++ Y KCG + A+++F D+ K+ +WT++IS
Sbjct: 283 HGKWVHAYLRKNDIEC-DVVIGTALVNMYGKCGDVQQAIEIFNDMP--EKDASAWTAMIS 339
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
FA+HG GK A + F M+K G+KPN VTF+ +L+ACSH GL
Sbjct: 340 VFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIE 399
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY C+VD+L RA ++A + +P + DV V LLG C HGN+++GE+V
Sbjct: 400 PQIYHYACMVDILSRARLFDEALFLIRSMPMK-PDVYVWGALLGGCQMHGNIKLGEKVAH 458
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN-ALKFPGRSLV 415
++++E N Y+ + +I G+Y A+R+R M ER K PG S++
Sbjct: 459 YLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSII 509
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 206/412 (50%), Gaps = 68/412 (16%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SFT+S L++ C +S G +H I K GF SHV+V TALV+ Y + G + ++ ++FD
Sbjct: 10 SFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFD 69
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-- 185
E+ ER++ W MI+ + G++ AR LF+EMP RN SW ++DGY+R+ A
Sbjct: 70 EMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELL 129
Query: 186 ---------------------------------------TEPSEITILAVLPAIWQNGAV 206
+P E+T+ ++ A GA+
Sbjct: 130 FSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGAL 189
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y + GF+ D+ + + LID YAKCG + +L +F + +KNL W SII
Sbjct: 190 DLGKEIHLYAMEMGFD-LDVYIGSALIDMYAKCGSLDKSLVVF--FKLRKKNLFCWNSII 246
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
G A+HG + A+ F RMQ+ +KPN VTF+SVL AC+H GL
Sbjct: 247 EGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSI 306
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+VD+LG+AG LE A ++ + E + V+ LLG C H N+++ +
Sbjct: 307 PPEIEHYGCMVDLLGKAGLLEDALELVRSMRME-PNSVIWGALLGGCKLHRNLKIAQVAV 365
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF-PGRSLV 415
+ +E N G Y L+ N+ A V R+ + +R M E K PG S +
Sbjct: 366 NESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWI 417
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 44/252 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ YS ++A ++ ++Q T+ P D T + +I C L +LG
Sbjct: 141 WTTMIACYSQNKQFREALAVFNEMQ---TNGIDP-----DEVTMATIISACAHLGALDLG 192
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H ++GF VY+ +AL++MY G L S +F +L ++NL WN +I GL
Sbjct: 193 KEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVH 252
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A ++F +RM R +P+ +T ++VL A G V
Sbjct: 253 GYAEEALAMF------------------SRMQREK---IKPNGVTFISVLGACTHAGLVE 291
Query: 208 NCQLIHGYGEKRGFNAF-------DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
G KR + +I C++D K G + AL+L + +E N V
Sbjct: 292 E-------GRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRME-PNSV 343
Query: 261 SWTSIISGFAMH 272
W +++ G +H
Sbjct: 344 IWGALLGGCKLH 355
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 207/382 (54%), Gaps = 36/382 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ T++FL C + G +H K GF VY TALV+MY LG L + ++F
Sbjct: 9 NELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVF 68
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
DE+ R++ TWN +I G + G++E A LF+ MP R+VVSWT ++ GY++
Sbjct: 69 DEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALE 128
Query: 178 --MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+ P+E+TI +V A + GA+ + I Y G ++ VSN L++
Sbjct: 129 MFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMK-NLYVSNTLLEM 187
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
YA+CG I +A +F +I +R+NL SW S++ G A+HG A++ +++M G++P+ V
Sbjct: 188 YARCGKIDAARHVFNEIG-KRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDV 246
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ ++ AC+HGGL HYGC+VD+LGRAG L++A +
Sbjct: 247 TFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKS 306
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + D V+ LLGACSFH NVE E + ++E N G+YV++ NI A R+
Sbjct: 307 MPMK-PDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASAQRWDG 365
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+LR++M K G S++
Sbjct: 366 VAKLRKLMKGGQITKAAGYSVI 387
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 32/164 (19%)
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P+E+T + PA ++ + ++IH + K GF+ FD+ L+D YAK G + A +
Sbjct: 8 PNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFD-FDVYALTALVDMYAKLGVLMLARQ 66
Query: 248 LFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMGKAA 278
+F++++V +++VSWT++ISG++ +GM A
Sbjct: 67 VFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKA 126
Query: 279 VENFERMQK-VGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGR 320
+E F +M+K ++PN VT SV +AC+ G L G ++ R
Sbjct: 127 LEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYAR 170
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 219/418 (52%), Gaps = 44/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N++++ Y +AF LY ++ + L + D T ++ L LG
Sbjct: 224 WNSIINGYVRCGLADEAFDLYYKMGE--------LNVMPDEVTMIGVVSASAQLENLALG 275
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH I ++G V + AL++MY+ ++ + LF+ + ++ +V+W M+ G K+
Sbjct: 276 RKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G LE A LF EMP ++VV W ++ G+ + RS A S P +IT++ L
Sbjct: 336 GLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCL 395
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ +H Y +K ++ + L+D YAKCG I A+++FE++ +
Sbjct: 396 SACSQLGALDVGIWMHHYVDKHNLT-MNVALGTALVDMYAKCGNIKKAIQVFEEMP--GR 452
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N ++WT+II G A+HG AA+ F M +GL P+ +TF+ VL+AC HGGL
Sbjct: 453 NSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYF 512
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CLVD+LGRAG LE+AE++ +P E D VV L HG
Sbjct: 513 YQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFE-PDAVVWGALFFGSRIHG 571
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
NV MGER K+LE++ +GG YVL+ N+ + A ++R++M+ER K PG S
Sbjct: 572 NVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 163/360 (45%), Gaps = 83/360 (23%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + Y +++P A LLY+ + + S P D++TY L + C S
Sbjct: 122 WNMAIRGYVESENPINAVLLYRNM--LRKGSAIP-----DNYTYPLLFKVCAGFSLSWTA 174
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++ + ++GF S ++V+ A++++ VS G L + KLFDE R+LV+WN +I G V+
Sbjct: 175 NEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRC 234
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A L+ +M NV+ P E+T++ V+ A Q +
Sbjct: 235 GLADEAFDLYYKMGELNVM---------------------PDEVTMIGVVSASAQLENLA 273
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H E+ G N + ++N L+D Y KC I +A LFE+++ +K +VSWT+++
Sbjct: 274 LGRKLHQSIEEMGLN-LTVPLANALMDMYIKCKNIEAAKILFENMT--KKTVVSWTTMVI 330
Query: 268 GFAMHGM-------------------------------GKAAVENFERMQKVGLKPNRVT 296
G+A G+ K A+ F MQ + P+++T
Sbjct: 331 GYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT 390
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
++ L+ACS G L G LVDM + G +++A ++ +P
Sbjct: 391 VVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP 450
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 14/179 (7%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-----------MNRSNGASTE 187
V + +W L+Y + N SW + GY N S
Sbjct: 93 VAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T + I G+ + GF++ D+ V N +I CG + +A K
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDS-DLFVHNAIIHVLVSCGELLAARK 211
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
LF++ V ++LVSW SII+G+ G+ A + + +M ++ + P+ VT + V++A +
Sbjct: 212 LFDESCV--RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 219/418 (52%), Gaps = 44/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N++++ Y +AF LY ++ + L + D T ++ L LG
Sbjct: 224 WNSIINGYVRCGLADEAFDLYYKMGE--------LNVMPDEVTMIGVVSASAQLENLALG 275
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH I ++G V + AL++MY+ ++ + LF+ + ++ +V+W M+ G K+
Sbjct: 276 RKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G LE A LF EMP ++VV W ++ G+ + RS A S P +IT++ L
Sbjct: 336 GLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCL 395
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ +H Y +K ++ + L+D YAKCG I A+++FE++ +
Sbjct: 396 SACSQLGALDVGIWMHHYVDKHNLT-MNVALGTALVDMYAKCGNIKKAIQVFEEMP--GR 452
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N ++WT+II G A+HG AA+ F M +GL P+ +TF+ VL+AC HGGL
Sbjct: 453 NSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYF 512
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CLVD+LGRAG LE+AE++ +P E D VV L HG
Sbjct: 513 YQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFE-PDAVVWGALFFGSRIHG 571
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
NV MGER K+LE++ +GG YVL+ N+ + A ++R++M+ER K PG S
Sbjct: 572 NVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 163/360 (45%), Gaps = 83/360 (23%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + Y +++P A LLY+ + + S P D++TY L + C S
Sbjct: 122 WNMAIRGYVESENPINAVLLYRNM--LRKGSAIP-----DNYTYPLLFKVCAGFSLSWTA 174
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++ + ++GF S ++V+ A++++ VS G L + KLFDE R+LV+WN +I G V+
Sbjct: 175 NEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRC 234
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A L+ +M NV+ P E+T++ V+ A Q +
Sbjct: 235 GLADEAFDLYYKMGELNVM---------------------PDEVTMIGVVSASAQLENLA 273
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H E+ G N + ++N L+D Y KC I +A LFE+++ +K +VSWT+++
Sbjct: 274 LGRKLHQSIEEMGLN-LTVPLANALMDMYIKCKNIEAAKILFENMT--KKTVVSWTTMVI 330
Query: 268 GFAMHGM-------------------------------GKAAVENFERMQKVGLKPNRVT 296
G+A G+ K A+ F MQ + P+++T
Sbjct: 331 GYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT 390
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
++ L+ACS G L G LVDM + G +++A ++ +P
Sbjct: 391 VVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP 450
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-----------MNRSNGASTE 187
V + +W L+Y + NV SW + GY N S
Sbjct: 93 VAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T + I G+ + GF++ D+ V N +I CG + +A K
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDS-DLFVHNAIIHVLVSCGELLAARK 211
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
LF++ V ++LVSW SII+G+ G+ A + + +M ++ + P+ VT + V++A +
Sbjct: 212 LFDESCV--RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/413 (32%), Positives = 225/413 (54%), Gaps = 57/413 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLY-KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+LFN++ YS +++P KA L+ K L L D +T+ L++ CV
Sbjct: 93 VLFNSMFRGYSRSNAPLKAISLFIKALN---------YNLLPDDYTFPSLLKACVVAKAF 143
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G QLH + K+G + YV L+NMY + + ++FDE+ E +V++N +ITG
Sbjct: 144 QQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGY 203
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ A SLF ++ R + +P+++T+L+VL + G
Sbjct: 204 ARSSRPNEALSLFRQLQARKL---------------------KPNDVTVLSVLSSCALLG 242
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ + IH Y +K G + + ++V+ LID YAKCG + A+ +FE +SV ++ +W++
Sbjct: 243 ALDLGKWIHEYVKKNGLDKY-VKVNTALIDMYAKCGSLDGAISVFESMSV--RDTQAWSA 299
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I +AMHG G+ + FE M + ++P+ +TFL +L ACSH GL
Sbjct: 300 MIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVY 359
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+VD+LGRAG L +A K +P + T ++ R LL +CS HGN+E+ ++
Sbjct: 360 GIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTP-ILWRTLLSSCSSHGNLELAKQ 418
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V ++LE++ +GGDYV++ N+ A G++ D + LR++M + A+K PG S +
Sbjct: 419 VMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSI 471
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 39/258 (15%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
++YA LFE +P ++V + + GY+R N A + P + T ++L
Sbjct: 75 ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A A + + +H K G N + V LI+ YA C + A ++F++I
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNE-NPYVCPTLINMYAGCNDVDGAQRVFDEIL--EP 191
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGGLHYG---- 312
+VS+ +II+G+A A+ F ++Q LKPN VT LSVL++C+ G L G
Sbjct: 192 CVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIH 251
Query: 313 ----------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G L+ A I++ + D ++ A + HG
Sbjct: 252 EYVKKNGLDKYVKVNTALIDMYAKCGSLDGA--ISVFESMSVRDTQAWSAMIVAYAMHGQ 309
Query: 357 VEMGERVTRKVLEMERGN 374
G+ V EM R
Sbjct: 310 ---GQDVMSMFEEMARAK 324
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 225/461 (48%), Gaps = 90/461 (19%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT + S + P A LY Q+ +H ++P D+FT+ +++ C L +
Sbjct: 72 TFMWNTYIRGSSQSHDPVHAVALYAQM------THRSVKP--DNFTFPLVLKACTKLFWV 123
Query: 85 NLGTQLHAVISKVGFQSHVYVN-------------------------------TALVNMY 113
N G+ +H + ++GF S+V V +AL+ Y
Sbjct: 124 NTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGY 183
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
G L + KLFDE+P+R+LV+WNVMIT K GE+E AR LF+E P ++VVSW ++
Sbjct: 184 AQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVG 243
Query: 174 GYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
GY N + A P E+T+L++L A C + GEK
Sbjct: 244 GYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSA---------CADLGDXGEKVHAKI 294
Query: 224 FDIR-------VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
++ + N L+D YAKCG I + +F + K++VSW S+I G A HG +
Sbjct: 295 MELNKGKLSTLLGNALVDMYAKCGNIGKGVCVF--WLIRDKDMVSWNSVIGGLAFHGHAE 352
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGG----------------------LHYGCL 314
++ F MQ+ + P+ +TF+ VL ACSH G H GC+
Sbjct: 353 ESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCV 412
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VDML RAG L++A + E + +V R LLGAC HG+VE+ +R T ++L M
Sbjct: 413 VDMLARAGLLKEAFDFIASMKIE-PNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQ 471
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
GDYVL+ N+ A G + AE +R++MD+ K G S V
Sbjct: 472 SGDYVLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSSFV 512
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 149/357 (41%), Gaps = 54/357 (15%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y L + ++A L+ ++ ++ P D T L+ C L + G
Sbjct: 238 WNAMVGGYVLHNLNQEALELFDEMCEV---GECP-----DEVTMLSLLSACADLG--DXG 287
Query: 88 TQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
++HA I ++ + + ALV+MY G + +F + ++++V+WN +I GL
Sbjct: 288 EKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAF 347
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G E + LF EM V P EIT + VL A G V
Sbjct: 348 HGHAEESLGLFREMQRTKVC---------------------PDEITFVGVLAACSHTGNV 386
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + +IR C++D A+ G + A + +E N + W S++
Sbjct: 387 DEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIE-PNAIVWRSLL 445
Query: 267 SGFAMHG---MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG----GLHYGCLVDMLG 319
+HG + K A E RM +V + V +V SHG + L+D G
Sbjct: 446 GACKVHGDVELAKRATEQLLRM-RVDQSGDYVLLSNVY--ASHGEWDGAENVRKLMDDNG 502
Query: 320 ----RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
R +A +I P+ + R LLGAC +G+VE+ +RV ++L + R
Sbjct: 503 VTKTRGSSFVEAYRIE---PNPVNG----RTLLGACIVYGDVELAKRVNEELLRLRR 552
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 147/338 (43%), Gaps = 56/338 (16%)
Query: 85 NLGT--QLHAVI------SKVGFQSHVYVNTAL--VNMYVSLGFLKDSSKLFDELPERNL 134
NLGT Q+HA++ S VGF + + TA+ V + + + ++F ++P+ +
Sbjct: 13 NLGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDT 72
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
WN I G + + +A +L+ +M R+V +P T
Sbjct: 73 FMWNTYIRGSSQSHDPVHAVALYAQMTHRSV---------------------KPDNFTFP 111
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
VL A + V ++HG + GF + ++ V N L+ +AKCG + A +F+D
Sbjct: 112 LVLKACTKLFWVNTGSVVHGRVFRLGFGS-NVVVRNTLLVFHAKCGDLKVANDIFDD--S 168
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN----ACSHGGLH 310
++ ++V+W+++I+G+A G A + F+ M K L V + C+
Sbjct: 169 DKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFD 228
Query: 311 YGCLVDMLGRAGR-----LEQAEKIALGIPSEITDV------VVRRILLGACSFHGNVEM 359
+ D++ L + AL + E+ +V V LL AC+ G +
Sbjct: 229 EAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG--DX 286
Query: 360 GERVTRKVLEMERGN-----GGDYVLMYNILAGVGRYV 392
GE+V K++E+ +G G V MY +G+ V
Sbjct: 287 GEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGV 324
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 234/456 (51%), Gaps = 71/456 (15%)
Query: 6 NVTTRIHSHLLTTN-SLLHH-----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH 59
N I H+L + L HH T ++NTL+ S + +P + + QL + H
Sbjct: 51 NCAVSISDHVLNYSLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLR-----H 105
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPN-LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
L P DSF+++F ++ G QLH+ + GF H++V T L++MY G
Sbjct: 106 PTLLP--DSFSFAFTLKGIANDGCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGC 163
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWG-------ELEYARSLFEEMPCRNVVSWTGI 171
+ + K+FDE+ + N+V WN ++T + G + +F EM R+ SW+ +
Sbjct: 164 YEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTM 223
Query: 172 LDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+ G+ + + A PSE+++ VL A Q GA +++HG+ EK GF
Sbjct: 224 IVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGF 283
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
+ V+N LIDTY+KCG + A KL +IS+ AMHG A+
Sbjct: 284 LCI-VSVNNALIDTYSKCGNVDMA-KLVFNISL---------------AMHGRADEAIRV 326
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
F M++ G++P+ VTF+S+L ACSH GL HYGC+VD+ G
Sbjct: 327 FHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYG 386
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
RA RL++A + +P + +V++ R LLGACS HGN+E+ E V ++ EM+ N GD+V
Sbjct: 387 RAARLQKAYEFIRQMPI-LPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHV 445
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L+ N+ A G++ D +RR M E++ K PG S++
Sbjct: 446 LLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMI 481
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 211/429 (49%), Gaps = 66/429 (15%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
K + IY + + + FTY L + C G Q+H + K G S V++ +A
Sbjct: 113 KLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSA 172
Query: 109 LVNMYVSLGFLKDSSK------------------------------LFDELPERNLVTWN 138
+ MY S G L+D+ K LF ++P +N+ +WN
Sbjct: 173 GIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWN 232
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
VMI GL K G L AR LF+EM R+ +SW+ ++DGY R A T P
Sbjct: 233 VMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRP 292
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ +VL A GA+ + +H Y KR D + L+D YAKCG + ++
Sbjct: 293 GRFILSSVLAACSNIGAIDQGRWVHAY-LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
FE++ + + + +W ++I G A+HG + A+E F ++Q+ +KPN +T + VL AC+H G
Sbjct: 352 FEEM--KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
HYGC+VD+LGR+G +AE + +P + + V
Sbjct: 410 FVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMK-PNAAVWGA 468
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LLGAC HGN ++ ERV + +LE+E N G YVL+ NI A VGR+ D ++R++M R
Sbjct: 469 LLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGI 528
Query: 407 LKFPGRSLV 415
PG S+V
Sbjct: 529 KTVPGVSIV 537
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 151/387 (39%), Gaps = 117/387 (30%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGF--LKD 121
LFDS ++ +L Y TQLHA++ + G FQ H YV+ AL+ Y + F
Sbjct: 37 LFDS-------KSITSLQYL---TQLHALVLRSGHFQDH-YVSGALLKCYANPHFSNFDF 85
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+F +P N+ WN++I G ++ +L A + M ++D
Sbjct: 86 ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM----------VID-------- 127
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG--------------FNAF--- 224
P++ T + A AV+ + IHG+ K G + +F
Sbjct: 128 ----ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRL 183
Query: 225 ------------DIRVSNCLIDTYAKCGCIFSALKLFEDISVE----------------- 255
D+ N +ID Y KCG + +A LF + V+
Sbjct: 184 EDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGN 243
Query: 256 ------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
++ +SW+S++ G+ G K A+E F++MQ+ +P R SVL A
Sbjct: 244 LGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAA 303
Query: 304 CSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
CS+ G + G L+DM + GRL+ ++ + ++
Sbjct: 304 CSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER--EIF 361
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLE 369
++G + HG E + K+ E
Sbjct: 362 TWNAMIGGLAIHGRAEDALELFSKLQE 388
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 49/305 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+++++ Y A K+A +++Q+Q+ T RP F S ++ C + + G
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREET------RP--GRFILSSVLAACSNIGAIDQG 313
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+HA + + + + TAL++MY G L ++F+E+ ER + TWN MI GL
Sbjct: 314 RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIH 373
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A LF ++ +P+ IT++ VL A G V
Sbjct: 374 GRAEDALELFSKL---------------------QEGRMKPNGITLVGVLTACAHAGFVD 412
Query: 208 NCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
I + R F D + + C++D + G A L + + + N W ++
Sbjct: 413 KGLRI--FQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPM-KPNAAVWGAL 469
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLE 325
+ +HG NF+ ++VG L L + G Y L ++ + GR +
Sbjct: 470 LGACRIHG-------NFDLAERVG------KILLELEPQNSG--RYVLLSNIYAKVGRFD 514
Query: 326 QAEKI 330
KI
Sbjct: 515 DVSKI 519
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 220/405 (54%), Gaps = 44/405 (10%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+A +YK+++ +RP + T +I +C + NLG + H I + G +
Sbjct: 242 EAIKIYKEMEA------EKVRP--NEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFT 293
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+ + AL++MYV G L + LFD + ++ LV+W M+ G ++G L+ AR + ++P
Sbjct: 294 IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPE 353
Query: 163 RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLI 212
++VV W I+ G + + A + EP ++T++ L A Q GA+ I
Sbjct: 354 KSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWI 413
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y E+ + D+ + L+D YAKCG I AL++FE+I ++N ++WT++I G A+H
Sbjct: 414 HHYIERHKL-SIDVALGTALVDMYAKCGNIARALQVFEEIP--QRNCLTWTAVICGLALH 470
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G + A+ F +M +G+ P+ +TFL VL+AC HGGL H
Sbjct: 471 GNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKH 530
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
Y C+VD+LGRAG LE+AE++ +P D V L AC +GNV++GER K+LE+
Sbjct: 531 YSCMVDLLGRAGHLEEAEELVKNMPMA-ADAAVLGALFFACRVYGNVQIGERTAFKLLEI 589
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + G+YVL+ ++ + + +A R++M+++ K PG SLV
Sbjct: 590 DPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 169/383 (44%), Gaps = 85/383 (22%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + Y + + F+LYK++ T L+P D+ TY L++ C LG
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGT-----LKP--DNHTYPLLLKGCCGQYSSCLG 177
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + K GF+ ++V+ A + M +S G L + +F++ R+LVTWN MITG VK
Sbjct: 178 LGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKR 237
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +++EM V P+EIT++ ++ + Q +
Sbjct: 238 GLAIEAIKIYKEMEAEKV---------------------RPNEITMIGMISSCSQVQDLN 276
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ H Y ++ G F I ++N L+D Y KCG + +A LF++++ +K LVSWT+++
Sbjct: 277 LGKEFHCYIKEHGLE-FTIPLTNALMDMYVKCGELLTARVLFDNMA--QKTLVSWTTMVL 333
Query: 268 GFAMHGM-------------------------------GKAAVENFERMQKVGLKPNRVT 296
G+A G GK A+ F MQ ++P++VT
Sbjct: 334 GYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVT 393
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
++ L+ACS G L G LVDM + G + +A ++ IP
Sbjct: 394 MVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP 453
Query: 336 SEITDVVVRRILLGACSFHGNVE 358
+ + ++ + HGN +
Sbjct: 454 QR--NCLTWTAVICGLALHGNAQ 474
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTE 187
V L + EL+Y + + NV SW + GY G + +
Sbjct: 96 VAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLK 155
Query: 188 PSEITILAVLPAIWQNGAVRNC--QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P T +L G +C + G+ K GF DI V N I CG + A
Sbjct: 156 PDNHTYPLLLKGCC--GQYSSCLGLGVLGHVLKFGFEC-DIFVHNASITMLLSCGELSVA 212
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+F V ++LV+W S+I+G G+ A++ ++ M+ ++PN +T + ++++CS
Sbjct: 213 YDVFNKSRV--RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCS 270
Query: 306 H 306
Sbjct: 271 Q 271
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 239/455 (52%), Gaps = 59/455 (12%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
S N +SH + + + LFNT++H L DS +++ +Y +++ L
Sbjct: 52 SFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRK------EGLS 105
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P DSFT+ FL++ C L LG +LH ++ K G +S +VNT+LV++Y GF+ ++
Sbjct: 106 P--DSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAF 163
Query: 124 KLFDELPERNLVTWNVMITGLVKWGE-------LEYARSLFEEMPCRNVVSWTGILDGYT 176
K+FD++PE+N+ W +I+G + G+ A S+F+ M +++VSW+ ++ GY
Sbjct: 164 KVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYA 223
Query: 177 RMNRSNGASTE--------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
SNG E P ++ VL A + GA+ ++ F
Sbjct: 224 ----SNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFL 279
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ + LID YAKCG + SA ++F + +K++V W + ISG AM G KAA F
Sbjct: 280 GNPV-LGTALIDMYAKCGRMDSAWEVFR--GMRKKDIVVWNAAISGLAMSGHVKAAFGLF 336
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
+M+K G++P+ TF+ +L AC+H GL HYGC+VD+LGR
Sbjct: 337 GQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGR 396
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG L++A ++ +P E + +V LLG C H + ++ E V ++++ +E N G+YVL
Sbjct: 397 AGFLDEAHQLVKSMPME-ANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVL 455
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ NI + ++ DA ++R +M ER K PG S +
Sbjct: 456 LSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWI 490
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 129/327 (39%), Gaps = 81/327 (24%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
+HA + ++G Y+ ++ + G S ++F + E N+ +N MI GLV
Sbjct: 28 HVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLND 87
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
+ + ++ M R G S P T +L A + +
Sbjct: 88 SFQESIEIYHSM-------------------RKEGLS--PDSFTFPFLLKACARLLDSKL 126
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------------- 255
+HG K G + D V+ L+ Y KCG I +A K+F+DI +
Sbjct: 127 GIKLHGLVVKAGCES-DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYI 185
Query: 256 -----------------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
K++VSW+S+I G+A +G+ K A++ F +M G +P
Sbjct: 186 GVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRP 245
Query: 293 NRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIA 331
+ + VL AC+ G L G L+DM + GR++ A ++
Sbjct: 246 DCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVF 305
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVE 358
G+ + D+VV + + G+V+
Sbjct: 306 RGMRKK--DIVVWNAAISGLAMSGHVK 330
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 223/437 (51%), Gaps = 61/437 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + YS PK LY ++ + ++P D +TY FL + LG
Sbjct: 82 WNIMFKGYSRIACPKLGVSLYLEMLE------RNVKP--DCYTYPFLFKGFTRSVALQLG 133
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI------ 141
+LH + K G S+V+ + AL+NMY G + + +FD + ++VTWN MI
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRI 193
Query: 142 -----------TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------R 180
TG V G+++ AR F +MP R+ VSWT ++DGY R+N
Sbjct: 194 KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFRE 253
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+ +P E T+++VL A Q GA+ + I Y +K D V N LID Y KCG
Sbjct: 254 MQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKN-DTFVGNALIDMYFKCG 312
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ AL +F ++ +++ +WT+++ G A++G G+ A+ F +M K + P+ VT++ V
Sbjct: 313 NVEMALSIFN--TLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGV 370
Query: 301 LNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
L+AC+H G+ HYGC+VD+LG+AG L++A +I +P +
Sbjct: 371 LSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMK- 429
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
+ +V LLGAC H + EM ER ++LE+E NG YVL NI A ++ LR
Sbjct: 430 PNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELR 489
Query: 399 RVMDERNALKFPGRSLV 415
+VM +R K PG SL+
Sbjct: 490 QVMMDRGIKKTPGCSLI 506
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 68/312 (21%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS--LGFLKDSSKLFDELPE 131
L TC ++ + Q+H+ K G + + +++ S G + + +LFD +PE
Sbjct: 20 LFETCKSMYHLK---QIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPE 76
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSNGASTE 187
++ +WN+M G + + SL+ EM RNV ++ + G+TR
Sbjct: 77 PSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTR---------- 126
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
Q G +C ++ K G ++ ++ N LI+ Y+ CG I A
Sbjct: 127 ----------SVALQLGRELHCHVV-----KYGLDS-NVFAHNALINMYSLCGLIDMARG 170
Query: 248 LFEDISVE----------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
+F D+S + +K+++SWT+I++GF G AA + F +M +
Sbjct: 171 IF-DMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMP----E 225
Query: 292 PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
+ V++ ++++ G L C + L R Q KI P E T V V L AC
Sbjct: 226 RDHVSWTAMID----GYLRLNCYKEAL-MLFREMQTSKIK---PDEFTMVSV----LTAC 273
Query: 352 SFHGNVEMGERV 363
+ G +E+GE +
Sbjct: 274 AQLGALELGEWI 285
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 203/366 (55%), Gaps = 47/366 (12%)
Query: 89 QLHAVISKVGFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+HA++ K G S V V+T+L+ Y LG + D+ K+FD +P+R +VTWNV++ LV
Sbjct: 78 QIHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDALV 137
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE---------------PSE 190
+ G+L+ A +F EMP RNVVSW I+ G+TR NG + E P E
Sbjct: 138 RDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTR----NGWAQEAVDLFVEMTVAYGLAPDE 193
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T++ + A+ G + + HGY +R F+ D + LI Y +CG + +A F
Sbjct: 194 ATMVGFVSAVRDIGLLGIGKSAHGYVLRREFS-LDGALGVALISMYTRCGSMGAAHSCF- 251
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+SV KN+ WTS+I+GFA HG + A+ F M++VG++PN VTF++VLNAC+HGGL
Sbjct: 252 -LSVTTKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLV 310
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGCLVD+LGRAG L++A +A +P E V+ LL
Sbjct: 311 SEGFKYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLP-EDPGFVIWSSLLA 369
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC HG+VEM E K+ + + +G YVL+ N A ++ D R RR M+E K
Sbjct: 370 ACHSHGDVEMAELTASKLADAKPSHGSSYVLLSNTYARAKQWEDLRRTRRRMEEHGVTKK 429
Query: 410 PGRSLV 415
PG S +
Sbjct: 430 PGLSWI 435
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 97/256 (37%), Gaps = 50/256 (19%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ ++ ++A L+ ++ Y L P D T + + +G
Sbjct: 160 WNTIIAGFTRNGWAQEAVDLFVEMTVAYG-----LAP--DEATMVGFVSAVRDIGLLGIG 212
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
H + + F + AL++MY G + + F + +N+ W +I G
Sbjct: 213 KSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAH 272
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ E A LF EM R V GI EP+ +T +AVL A G V
Sbjct: 273 GQPEKALRLFAEM--RRV----GI---------------EPNGVTFVAVLNACNHGGLV- 310
Query: 208 NCQLIHGYGEKRGFNAFDIRVS----------NCLIDTYAKCGCIFSALKLFEDISVERK 257
GF FD+ S CL+D + G + A L ++ E
Sbjct: 311 ----------SEGFKYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLP-EDP 359
Query: 258 NLVSWTSIISGFAMHG 273
V W+S+++ HG
Sbjct: 360 GFVIWSSLLAACHSHG 375
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 220/405 (54%), Gaps = 44/405 (10%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+A +YK+++ +RP + T +I +C + NLG + H I + G +
Sbjct: 242 EAIKIYKEMEA------EKVRP--NEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFT 293
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+ + AL++MYV G L + LFD + ++ LV+W M+ G ++G L+ AR + ++P
Sbjct: 294 IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPE 353
Query: 163 RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLI 212
++VV W I+ G + + A + EP ++T++ L A Q GA+ I
Sbjct: 354 KSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWI 413
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y E+ + D+ + L+D YAKCG I AL++FE+I ++N ++WT++I G A+H
Sbjct: 414 HHYIERHKL-SIDVALGTALVDMYAKCGNIARALQVFEEIP--QRNCLTWTAVICGLALH 470
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G + A+ F +M +G+ P+ +TFL VL+AC HGGL H
Sbjct: 471 GNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKH 530
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
Y C+VD+LGRAG LE+AE++ +P D V L AC +GNV++GER K+LE+
Sbjct: 531 YSCMVDLLGRAGHLEEAEELVKNMPMA-ADAAVLGALFFACRVYGNVQIGERTAFKLLEI 589
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + G+YVL+ ++ + + +A R++M+++ K PG SLV
Sbjct: 590 DPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 169/383 (44%), Gaps = 85/383 (22%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + Y + + F+LYK++ T L+P D+ TY L++ C LG
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGT-----LKP--DNHTYPLLLKGCCGQYSSCLG 177
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + K GF+ ++V+ A + M +S G L + +F++ R+LVTWN MITG VK
Sbjct: 178 LGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKR 237
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +++EM V P+EIT++ ++ + Q +
Sbjct: 238 GLAIEAIKIYKEMEAEKV---------------------RPNEITMIGMISSCSQVQDLN 276
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ H Y ++ G F I ++N L+D Y KCG + +A LF++++ +K LVSWT+++
Sbjct: 277 LGKEFHCYIKEHGLE-FTIPLTNALMDMYVKCGELLTARVLFDNMA--QKTLVSWTTMVL 333
Query: 268 GFAMHGM-------------------------------GKAAVENFERMQKVGLKPNRVT 296
G+A G GK A+ F MQ ++P++VT
Sbjct: 334 GYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVT 393
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
++ L+ACS G L G LVDM + G + +A ++ IP
Sbjct: 394 MVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP 453
Query: 336 SEITDVVVRRILLGACSFHGNVE 358
+ + ++ + HGN +
Sbjct: 454 QR--NCLTWTAVICGLALHGNAQ 474
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTE 187
V L + EL+Y + + NV SW + GY G + +
Sbjct: 96 VAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLK 155
Query: 188 PSEITILAVLPAIWQNGAVRNC--QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P T +L G +C + G+ K GF DI V N I CG + A
Sbjct: 156 PDNHTYPLLLKGCC--GQYSSCLGLGVLGHVLKFGFEC-DIFVHNASITMLLSCGELSVA 212
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+F V ++LV+W S+I+G G+ A++ ++ M+ ++PN +T + ++++CS
Sbjct: 213 YDVFNKSRV--RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCS 270
Query: 306 H 306
Sbjct: 271 Q 271
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/421 (31%), Positives = 227/421 (53%), Gaps = 45/421 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ + P++A L+++++ T + P + T ++ C S G
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEME---TQNVKP-----NGITMVGVLSACAKKSDFEFG 256
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+ I + + ++ A+++MY G ++D+ +LFD++PE+++V+W M+ G K
Sbjct: 257 RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
GE + A+ +F+ MP +++ +W ++ Y + + A + +P E+T+++
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A Q GA+ IH Y +K+G + ++ LID Y KCG + AL +F SVER
Sbjct: 377 LSACAQLGAMDLGGWIHVYIKKQGMK-LNCHLTTSLIDMYCKCGDLQKALMVFH--SVER 433
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K++ W+++I+G AMHG GK A+ F +MQ+ +KPN VTF ++L ACSH GL
Sbjct: 434 KDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 493
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C+VD+LGRAG LE+A ++ +P V LLGAC+ H
Sbjct: 494 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA-ASVWGALLGACTIH 552
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
NV + E+ +++E+E GN G YVL+ NI A G++ LR++M + K PG S
Sbjct: 553 ENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSS 612
Query: 415 V 415
+
Sbjct: 613 I 613
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 88/383 (22%)
Query: 28 FNTLLHFYSLADSPKKAFLLY-KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+NTL+ Y+ + +P ++ L++ + L Q SP P D FT+ FLI+ L
Sbjct: 103 WNTLIRAYASSSNPHQSLLIFLRMLHQ------SPDFP--DKFTFPFLIKAASELEELFT 154
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G H ++ KV S V++ +L++ Y G L ++F +P R++V+WN MIT V+
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQ 214
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G E A LF+EM +NV +P+ IT++ VL A +
Sbjct: 215 GGCPEEALELFQEMETQNV---------------------KPNGITMVGVLSACAKKSDF 253
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +H Y E+ + +SN ++D Y KCG + A +LF+ + K++VSWT+++
Sbjct: 254 EFGRWVHSYIERNRIGE-SLTLSNAMLDMYTKCGSVEDAKRLFDKMP--EKDIVSWTTML 310
Query: 267 SGFA-------------------------------MHGMGKAAVENFERMQ-KVGLKPNR 294
G+A G K A+E F +Q KP+
Sbjct: 311 VGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDE 370
Query: 295 VTFLSVLNACSH----------------GGLHYGC-----LVDMLGRAGRLEQAEKIALG 333
VT +S L+AC+ G+ C L+DM + G L++A +
Sbjct: 371 VTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHS 430
Query: 334 IPSEITDVVVRRILLGACSFHGN 356
+ E DV V ++ + HG+
Sbjct: 431 V--ERKDVFVWSAMIAGLAMHGH 451
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 41/250 (16%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
FD L+T L + L+YA+ +F+++P N+ +W ++ Y + + +
Sbjct: 64 FFDPFSASRLIT----AAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119
Query: 185 -----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
P + T ++ A + + + HG K + D+ + N LI
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS-DVFILNSLI 178
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
YAKCG + ++F +++ R+++VSW S+I+ F G + A+E F+ M+ +KPN
Sbjct: 179 HFYAKCGELGLGYRVF--VNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPN 236
Query: 294 RVTFLSVLNACS-HGGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
+T + VL+AC+ +G ++DM + G +E A+++
Sbjct: 237 GITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFD 296
Query: 333 GIPSEITDVV 342
+P + D+V
Sbjct: 297 KMPEK--DIV 304
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 221/420 (52%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ Y + P++A L+ +L + + +RP D T + C + LG
Sbjct: 190 WNTLIGGYVRSGLPREALELFWRLAE----DGNAVRP--DEVTVIGAVSGCAQMGDLELG 243
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH + G + V + A+++MYV G L+ ++ +F+ + R V+W MI G +
Sbjct: 244 KRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARL 303
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G +E AR LF+EMP R+V W ++ GY + + A +P+EIT++ +L
Sbjct: 304 GMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLL 363
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ +H Y ++ + + + L+D YAKCG I A+ +F +I V+
Sbjct: 364 SACSQLGALEMGMWVHHYIDRHKLH-LSVALGTSLVDMYAKCGNIKKAICVFNEIPVQ-- 420
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N ++WTS+I G A HG A+E F+RM +GL+P+ +TF+ VL+AC H GL
Sbjct: 421 NALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFF 480
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C++D+LGRAG L++AE++ +P + D VV L AC HG
Sbjct: 481 SLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMD-PDAVVWGALFFACRMHG 539
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ +GE+ K++E++ + G YVL+ N+ A A+++R +M K PG S +
Sbjct: 540 NITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCI 599
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 128/529 (24%), Positives = 198/529 (37%), Gaps = 156/529 (29%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTL---------------------LFNTLLHFYSLADS 40
P S V ++H+H L + L H+ L + L SL
Sbjct: 18 PPSFRVLLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHSDPASPRPLLHALAILASLPSP 77
Query: 41 PKKAFLLYKQLQQIYTHSHSPL-----RPLF-----------DSFTYSFLIRTCVTLSYP 84
P AF + + H L PL+ D T+ FLI+ C L Y
Sbjct: 78 PDSAFPYNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYR 137
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+ G + + K+GF + V+V A ++ + G + + +LFDE P R++V+WN +I G
Sbjct: 138 SYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGY 197
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
V+ G A LF + +G + P E+T++ + Q G
Sbjct: 198 VRSGLPREALELFWRLA-------------------EDGNAVRPDEVTVIGAVSGCAQMG 238
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + +H + + +G +R+ N ++D Y KCG + A +FE IS + VSWT+
Sbjct: 239 DLELGKRLHEFVDNKGVRC-TVRLMNAVMDMYVKCGSLELANSVFERIS--NRTAVSWTT 295
Query: 265 IISGFAMHGM-------------------------------GKAAVENFERMQKVGLKPN 293
+I G A GM GK A+ F MQK + PN
Sbjct: 296 MIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPN 355
Query: 294 RVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQA----- 327
+T +++L+ACS G L G LVDM + G +++A
Sbjct: 356 EITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFN 415
Query: 328 -------------------------------EKIALGI-PSEITDVVVRRILLGACSFHG 355
I LG+ P EIT + V L AC G
Sbjct: 416 EIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGV----LSACCHAG 471
Query: 356 NVEMGER---VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
VE G + + +ER Y M ++L G +AE+L M
Sbjct: 472 LVEAGRQFFSLMHAKYHLER-KMKHYSCMIDLLGRAGHLDEAEQLVNAM 519
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 208/381 (54%), Gaps = 51/381 (13%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
H + P + FTY LIR C G Q+HA + K GF + + L++MYV+
Sbjct: 87 HKSVSP--NKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQS 144
Query: 119 LKDSSKLFDELPER--NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
L+ + ++FD +P+R N V+WN MI V+ L A +LF+ M NVV LD +
Sbjct: 145 LEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV-----LDKFV 199
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
++L A GA+ + IHGY EK G D +++ +ID Y
Sbjct: 200 ----------------AASMLSACTGLGALEQGKWIHGYIEKSGIE-LDSKLATTVIDMY 242
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCGC+ A ++F ++ +K + SW +I G AMHG G+AA+E F+ M++ + P+ +T
Sbjct: 243 CKCGCLEKASEVFNELP--QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 300
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F++VL+AC+H GL H+GC+VD+LGRAG LE+A K+ +
Sbjct: 301 FVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM 360
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P D V L+GAC HGN E+GE++ +KV+E+E N G YVL+ N+ A GR+ D
Sbjct: 361 PVN-PDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDV 419
Query: 395 ERLRRVMDERNALKFPGRSLV 415
++R++M++R K PG S++
Sbjct: 420 AKVRKLMNDRGVKKAPGFSMI 440
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/438 (32%), Positives = 224/438 (51%), Gaps = 48/438 (10%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
TR+ +H N LLFN ++ +SL +F + ++ T + SP D
Sbjct: 59 ATRLFAHTHNPN-----ILLFNAIIKAHSLHPPFHASFSFFSLMK---TRAISP-----D 105
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
+T + L ++ L Y LG +HA + ++GF H V A + +Y S + D+SK+FD
Sbjct: 106 EYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFD 165
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+ + ++V WN+MI G K G+LE +F +M R VVSW ++ + N+ A
Sbjct: 166 EMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALEL 225
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
EP + +++ VLP + GAV + IH Y +GF I V N L+D Y
Sbjct: 226 FNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYC 285
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + +A +F D++ KN+VSW ++ISG A +G G+ V FE M G +PN TF
Sbjct: 286 KCGNLQAAWSIFNDMA--SKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTF 343
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL C+H GL HYGC+VD+LGR G + +A + +P
Sbjct: 344 VGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMP 403
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ T + LL AC +G+ E+ E ++++ +E N G+YVL+ N+ A GR+ + E
Sbjct: 404 LKPT-AALWGALLSACRTYGDREIAENAAKELVRLEPWNSGNYVLLSNVYAEEGRWDEVE 462
Query: 396 RLRRVMDERNALKFPGRS 413
++R +M K PG+S
Sbjct: 463 KVRVLMRGGGVKKVPGQS 480
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 45/309 (14%)
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
T++H + G Q + V++ SL + +++LF N++ +N +I
Sbjct: 25 TEIHGHFLRHGLQQSNQILAHFVSVCASLRRVPYATRLFAHTHNPNILLFNAIIKAHSLH 84
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ S F M R + D YT AS + V + + G R
Sbjct: 85 PPFHASFSFFSLMKTRAISP-----DEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTR 139
Query: 208 NCQL------IHGYGEKRG-----FNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ + ++ E+ G F+ D+ V N +I + K G + + +K+F +
Sbjct: 140 HASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQM- 198
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
+ + +VSW ++S A + + A+E F M + G +P+ + ++VL C+ G + G
Sbjct: 199 -KERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIG 257
Query: 313 ---------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
LVD + G L+ A I + S+ +VV ++
Sbjct: 258 EWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASK--NVVSWNAMISGL 315
Query: 352 SFHGNVEMG 360
+++G E+G
Sbjct: 316 AYNGEGEVG 324
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 232/436 (53%), Gaps = 43/436 (9%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+ LL T L+NT+ Y+ + +P A LL++ + + H P D++T+
Sbjct: 39 HARLLFDAVYHPSTYLYNTMFRVYAASPTPLHALLLHRHM---FRHGPPP-----DTYTF 90
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
FL++ C L++ G +LH K G HV+V +L+++Y S + + ++FD +
Sbjct: 91 PFLLKACSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGY 150
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------- 184
R++ +W ++ +E AR +F+EMP R+VVS++ +L Y R NR A
Sbjct: 151 RDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFREL 210
Query: 185 ---STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
EPS+ +++VL A GA+ + ++ + + D R++ LID + KCG
Sbjct: 211 FSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGS 270
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I AL +FE + K++ WT+++SG AMHG+G+ +E FE+M G+KP+ VTF+++L
Sbjct: 271 IEHALLVFE--GAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALL 328
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ CSH GL H+GC+VD+LGRAG ++QA ++ +P E
Sbjct: 329 SGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFE-P 387
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ + LL AC + NVE+GE + +++ E NG Y+ + ++ GR+ + E+++
Sbjct: 388 NAAIWGALLNACRVYKNVEVGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKL 447
Query: 400 VMDERNALKFPGRSLV 415
M E K PG SL+
Sbjct: 448 KMKEVGCRKGPGCSLI 463
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 227/421 (53%), Gaps = 45/421 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ + SP++A L+K+++ RP + T ++ C G
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKM------ENARP--NRVTMVGVLSACAKRIDLEFG 251
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
I + G ++ ++ A+++MYV G L+D+ +LFD++ E+++V+W MI G K
Sbjct: 252 RWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKV 311
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
G+ + AR +F+ MP ++ +W ++ Y + + A +T+P+E+T+ +
Sbjct: 312 GDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLAST 371
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A Q GA+ IH Y +K+G + ++ LID Y+KCG + AL++F SVER
Sbjct: 372 LAACAQLGAMDLGGWIHVYIKKQGIK-LNFHITTSLIDMYSKCGHLEKALEVF--YSVER 428
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++ W+++I+G AMHG G+AA++ F +MQ+ +KPN VTF ++L ACSH GL
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C+VD+LGRAG LE+A ++ +P + V LLGAC +
Sbjct: 489 FNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPI-VPSASVWGALLGACRIY 547
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
GNVE+ E ++LE + N G YVL+ NI A G++ RLR+ M K PG S
Sbjct: 548 GNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSS 607
Query: 415 V 415
+
Sbjct: 608 I 608
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 180/409 (44%), Gaps = 91/409 (22%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
SPSS + ++ + N +NTL+ ++ + P + L++ +Q ++
Sbjct: 76 SPSSLDYACKVFDQIPRPN-----LYTWNTLIRAFASSPKPIQGLLVF--IQMLHESQRF 128
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
P +S+T+ F+I+ +S G +H ++ K F S ++++ +L++ Y SLG L
Sbjct: 129 P-----NSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLD 183
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ +F ++ E+++V+WN MI+G V+ G E A LF+ M N
Sbjct: 184 SAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMEN---------------- 227
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P+ +T++ VL A + + + Y E+ G + ++ +SN ++D Y KCG
Sbjct: 228 -----ARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGID-INLILSNAMLDMYVKCG 281
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL---------- 290
+ A +LF+ + E K++VSWT++I G+A G AA F+ M + +
Sbjct: 282 SLEDARRLFDKM--EEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSY 339
Query: 291 ----------------------KPNRVTFLSVLNACSH-GGLHYG--------------- 312
KPN VT S L AC+ G + G
Sbjct: 340 QQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLN 399
Query: 313 -----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G LE+A ++ + E DV V ++ + HG+
Sbjct: 400 FHITTSLIDMYSKCGHLEKALEVFYSV--ERRDVFVWSAMIAGLAMHGH 446
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 150/343 (43%), Gaps = 53/343 (15%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-----K 124
T LI C + QLHA + + G + + ++ + SS K
Sbjct: 32 TVPILIDKCANKKHLK---QLHAHMLRTGL---FFDPPSATKLFTACALSSPSSLDYACK 85
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD++P NL TWN +I P + ++ + +L R
Sbjct: 86 VFDQIPRPNLYTWNTLIRAFAS-----------SPKPIQGLLVFIQMLHESQRF------ 128
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P+ T V+ A + ++ Q IHG K F + D+ +SN LI Y+ G + S
Sbjct: 129 ---PNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGS-DLFISNSLIHFYSSLGDLDS 184
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A +F I VE K++VSW S+ISGF G + A++ F+RM+ +PNRVT + VL+AC
Sbjct: 185 AYLVFSKI-VE-KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSAC 242
Query: 305 SHG-GLHYG-CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
+ L +G D + R G I L + + + D+ V+ C G++E R
Sbjct: 243 AKRIDLEFGRWACDYIERNGI-----DINLILSNAMLDMYVK------C---GSLEDARR 288
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
+ K ME + + M + A VG Y A R+ VM +
Sbjct: 289 LFDK---MEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPRED 328
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 240/461 (52%), Gaps = 55/461 (11%)
Query: 1 SPSSNNVTTRIHSHLLTTNSL------LHHTLLFNTLLHFY--SLADSPKKAFLLYKQLQ 52
SPSSN++ + HS TN+ L HT +N + + S+AD K L+ K
Sbjct: 19 SPSSNSLPNQTHSTFSNTNTNTNQGLSLRHTTKYNDPIVSWTTSIADYCKSGHLV-KAAS 77
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN-----LGTQLHAVISKVGFQ-SHVYVN 106
+ + + P + T+ L+ C YP+ GT +HA + K+G + V V
Sbjct: 78 KFVQMREAAIEP--NHITFITLLSACA--HYPSRSSISFGTAIHAHVRKLGLDINDVMVG 133
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
TAL++MY G ++ + FD++ RNLV+WN MI G ++ G+ E A +F+ +P +N +
Sbjct: 134 TALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAI 193
Query: 167 SWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
SWT ++ G+ + + A P +T++AV+ A G + +H
Sbjct: 194 SWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLV 253
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
+ F +++VSN LID Y++CGCI A ++F+ + ++ LVSW SII GFA++G+
Sbjct: 254 MTQDFRN-NVKVSNSLIDMYSRCGCIDLARQVFD--RMPQRTLVSWNSIIVGFAVNGLAD 310
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A+ F MQ+ G KP+ V++ L ACSH GL HYGCL
Sbjct: 311 EALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCL 370
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+ RAGRLE+A + +P + +V++ LL AC GN+ + E V ++E++ G
Sbjct: 371 VDLYSRAGRLEEALNVLKNMPMKPNEVILGS-LLAACRTQGNIGLAENVMNYLIELDSGG 429
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+YVL+ NI A VG++ A ++RR M ER K PG S +
Sbjct: 430 DSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSI 470
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/425 (34%), Positives = 219/425 (51%), Gaps = 67/425 (15%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF------------DSFTYS 72
LLF FY DS L + + YT S+ L +F DS T+
Sbjct: 95 ALLFT---QFYGFIDSD-----LCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFP 146
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
++++ L LG +H I ++GF+S+VYV+TALVNMY + + D+ ++FDE+P+R
Sbjct: 147 TVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDR 206
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
N+V+WN +ITG +F EM A +P E+T
Sbjct: 207 NIVSWNALITGYNHNRMFRKVIDVFREMQI---------------------AGAKPVEVT 245
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
++ VL A GA+ + I Y + ++ V LID YAKCG + A K+F+ +
Sbjct: 246 MVGVLLACAHLGALNQGRWIDDYIDHNRLR-LNVFVGTALIDMYAKCGVVDEAEKIFKAM 304
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
V KN+ +W +ISG+AM+G G++A++ F RM KP+ VTFL VL AC H GL
Sbjct: 305 RV--KNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNE 362
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC+VD+LGRAG L++A+++ + + D ++ R LLGA
Sbjct: 363 GRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQ-PDPIIWRELLGA 421
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C HGN+++GE +K+LE+E NG +YVL+ N+ A R+ +R +MD R K P
Sbjct: 422 CRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVP 481
Query: 411 GRSLV 415
G S +
Sbjct: 482 GCSSI 486
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 232/428 (54%), Gaps = 45/428 (10%)
Query: 22 LHH--TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79
+HH T L+NT+ Y+ + +P A LL++ + + H P D++T+ FL++ C
Sbjct: 48 IHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLR---HGPPP-----DTYTFPFLLKACS 99
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
L++ G +LH K G HV+V +L+++Y S + + ++FD + R++ +W
Sbjct: 100 ALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTT 159
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPS 189
++ ++ AR +F+EMP R+V+S++ ++ Y R NR A EPS
Sbjct: 160 LLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPS 219
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ +++VL A GA+ + ++ Y + + D R++ LID + KCG I AL +F
Sbjct: 220 DSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVF 279
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
E + K++ WT+++SG AMHG+G+ +E FE+M G+KPN VTF+++L+ CSH GL
Sbjct: 280 E--GAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGL 337
Query: 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
H+GC+VD+LGRAG ++QA ++ +P E + + L
Sbjct: 338 VNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFE-PNAAIWGSL 396
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
L AC + NVE+GE + +++ E NG Y+ + ++ GR+ + E+++ M E
Sbjct: 397 LNACRVYKNVEIGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCR 456
Query: 408 KFPGRSLV 415
K PG SL+
Sbjct: 457 KGPGCSLI 464
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/519 (29%), Positives = 237/519 (45%), Gaps = 141/519 (27%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ +S + P++AF+++ + + D F++S +++ C L
Sbjct: 88 FLWNAIIKSFSHGEDPREAFVIFNLMLENGV--------CVDKFSFSLVLKACSRLGLIK 139
Query: 86 LGTQLHAVISKVGFQSHVYVNTAL-------------------------------VNMYV 114
G Q+H ++ ++ S V++ L ++ YV
Sbjct: 140 EGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYV 199
Query: 115 SLGFLKDSSKLFD----------------------------------ELPERNLVTWNVM 140
G +K + +LFD E+P+R+L++WN M
Sbjct: 200 KHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSM 259
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-------------------- 180
I G VK G++E A LF +MP R+VVSW ++DGY ++
Sbjct: 260 IDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCN 319
Query: 181 -------SNGASTE---------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
NG E P T+L L AI Q G +H Y E
Sbjct: 320 AMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIED 379
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
GF+ + ++ LID YAKCG I +AL +FEDI + K++ W +II G A+HG+G+ A
Sbjct: 380 NGFSLSE-KLGVALIDMYAKCGSIDNALSVFEDI--DDKSIDHWNAIIGGLAIHGLGEVA 436
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
E F M+K+ +KP+ +TF+ VLNAC+H GL HYGC+VD
Sbjct: 437 FELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVD 496
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+LGRAG +E+A+K +P E D VV R LL AC H N +GE V + ++ ++ N
Sbjct: 497 ILGRAGHVEEAKKFVEKMPIEPND-VVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPS 555
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVL+ NI AG G + D R+R +M +R+ K PG S +
Sbjct: 556 SYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQI 594
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 102/432 (23%), Positives = 188/432 (43%), Gaps = 83/432 (19%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAF--------------------LL 47
+IHS L+TT + + +L +L+F S + P F L
Sbjct: 30 VNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFL 89
Query: 48 YKQLQQIYTHSHSPLRPLF-------------DSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
+ + + ++H P R F D F++S +++ C L G Q+H ++
Sbjct: 90 WNAIIKSFSHGEDP-REAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 148
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
++ S V++ L+ +Y+ G L + +LFD + +R+ V++N MI G VK G ++ AR
Sbjct: 149 GRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSAR 208
Query: 155 SLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSE-------ITILAVLPAIWQNGA 205
LF+ MP +N++SW ++ GY R + E E I+ +++ + G
Sbjct: 209 ELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGK 268
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ N + KR D+ ++D YAK G I A LF+++ ++++S ++
Sbjct: 269 MENAHHLFNQMPKR-----DVVSWANMVDGYAKLGEIDIARGLFDEMP--ERDVISCNAM 321
Query: 266 ISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACSHGGLHYG------------ 312
++G+ +G A+ F M + L P+ T L L+A + G H+
Sbjct: 322 MAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLG-HFDEGVALHCYIEDN 380
Query: 313 ----------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR--ILLGACSFHGNVEMG 360
L+DM + G ++ AL + +I D + ++G + HG +G
Sbjct: 381 GFSLSEKLGVALIDMYAKCGSIDN----ALSVFEDIDDKSIDHWNAIIGGLAIHG---LG 433
Query: 361 ERVTRKVLEMER 372
E +EME+
Sbjct: 434 EVAFELFMEMEK 445
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 219/418 (52%), Gaps = 44/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L++ Y P++A +Y QQ+ T P D T ++ C L LG
Sbjct: 223 WNSLINGYVRRRQPREAMGIY---QQMITEHVKP-----DEVTMIGVVSACAQLESLKLG 274
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H I + G + + AL++MYV G L+ LFD + ++ +V+W MI G K
Sbjct: 275 REIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKN 334
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G L+ A LF +MP +NVV+W ++ + N S A + +P ++T+L L
Sbjct: 335 GLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCL 394
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ H Y +K + D+ + LID YAKCG + AL++F ++ R+
Sbjct: 395 SACSQLGALDTGMWTHNYIKKHNL-SLDVALGTALIDMYAKCGNMTKALQVFNEMP--RR 451
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N ++WT+II G A++G A+ F +M GL P+ +TFL VL AC HGGL
Sbjct: 452 NSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYF 511
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+V++LGRAG LE+AE++ +P E D +V L AC H
Sbjct: 512 DQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPME-ADAMVWGALFFACGIHR 570
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
N+ +GER K+L+++ + G YVL+ N+ G++ +A+ +R++M ER K PG S
Sbjct: 571 NLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSS 628
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 176/372 (47%), Gaps = 85/372 (22%)
Query: 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97
+++P+K +LYK++ + + RP D++TYSFL + C L +G ++ + K+
Sbjct: 131 SENPQKGLVLYKRML-----TRAGCRP--DNYTYSFLFKVCANLVLSYMGFEILGQVLKM 183
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
GF +Y+ +++M VS+G + K+FDE R+LV+WN +I G V+ + A ++
Sbjct: 184 GFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIY 243
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
++M +V +P E+T++ V+ A Q +++ + IH Y E
Sbjct: 244 QQMITEHV---------------------KPDEVTMIGVVSACAQLESLKLGREIHRYIE 282
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM--- 274
+ G N I + N L+D Y KCG + + LF+++ +K +VSWT++I G+A +G+
Sbjct: 283 ESGLN-LKISLVNALMDMYVKCGDLEAGKVLFDNM--RKKTVVSWTTMIVGYAKNGLLDM 339
Query: 275 -GK---------------------------AAVENFERMQKVGLKPNRVTFLSVLNACSH 306
GK A+E F MQ +KP++VT L L+ACS
Sbjct: 340 AGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQ 399
Query: 307 -GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G L G L+DM + G + +A ++ +P + +
Sbjct: 400 LGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRR--NSLTWT 457
Query: 346 ILLGACSFHGNV 357
++G + +GNV
Sbjct: 458 AIIGGLALYGNV 469
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 224/428 (52%), Gaps = 55/428 (12%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
++HL+ + ++ NT++ YS P +A L+ + P P D FTY
Sbjct: 46 YAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLC------QPTSPRPDKFTY 99
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
FL+++C L P +G QLH +I K G +S YV+ L++MY S G + K+F ++ +
Sbjct: 100 PFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRD 159
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
R++V+W MI G V A LFEEM + DG EP+E
Sbjct: 160 RDVVSWTSMIDGFVDDDRALEAIRLFEEM----------VEDG-----------VEPNEA 198
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+++VL A GAV + + G E+R + V LID YAKCG I SA K+F+
Sbjct: 199 TVVSVLRACADAGAVGMGRRVQGVIEERKI-GLEANVRTALIDMYAKCGSIGSARKVFDG 257
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
I K++ +WT++ISG A HG+ + AV F++M+ GL+P+ T +VL+AC + G
Sbjct: 258 IV--NKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFS 315
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+L R G L++AE+ +P E DVV+ R L+
Sbjct: 316 EGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIE-PDVVLWRTLIW 374
Query: 350 ACSFHGNVEMGERV--TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
A HG+++ E++ R +L+M+ + G YVL+ N+ A G++ D ++R +M+++
Sbjct: 375 ASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLS 434
Query: 408 KFPGRSLV 415
K PG S +
Sbjct: 435 KPPGCSRI 442
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 221/466 (47%), Gaps = 91/466 (19%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L NT+L Y+L +P+ A + + P DSFTYSFLI+
Sbjct: 417 AFLANTMLRAYALGGAPRDALAAFSAM------------PRRDSFTYSFLIKALSAAGVA 464
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+ +H+ + K+G +V AL++ Y G D+ K+FDE+PER++V+WN + +
Sbjct: 465 PV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAM 523
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYT-------------RMNRSN--------- 182
V+ GEL AR LF+EMP ++ VSW ILDGYT RM N
Sbjct: 524 VREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVS 583
Query: 183 -------------------------------GASTEPSEITILAVLPAIWQNGAVRNCQL 211
AS E ++++L A ++G++ +
Sbjct: 584 GYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKR 643
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
IH Y KR V N LID + KCGC+ A +F+ +V+ K+ VSW SII GFAM
Sbjct: 644 IHRYVRKRNLGR-STHVCNALIDMFCKCGCVNRADYVFDTETVQ-KDSVSWNSIIGGFAM 701
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------- 309
HG G A+E F +M++ G P+ VT ++VL+AC+H G
Sbjct: 702 HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIE 761
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
HYGC++D+LGR G +++A + +P E +V+ LL AC H NVE E ++ +
Sbjct: 762 HYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGS-LLSACRLHKNVEYAEIAVNELSK 820
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ N G+Y ++ NI A G++ D + R M + K G S V
Sbjct: 821 LQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWV 866
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 128/297 (43%), Gaps = 36/297 (12%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL--PERNLVTWNVMITGLVK 146
+LHA + K G + LV+ Y L L S ++FD + P + N M+
Sbjct: 370 ELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYAL 429
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G A + F MP R+ +++ ++ + A P + AV + + G+V
Sbjct: 430 GGAPRDALAAFSAMPRRDSFTYSFLIKALS------AAGVAP----VRAVHSHVVKLGSV 479
Query: 207 RNC----QLIHGYGEKRGFNAF----------DIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+ LI Y + GF+ D+ N + + G + A KLF+++
Sbjct: 480 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEM 539
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA-CSHGGLHY 311
K+ VSW +I+ G+ G +AA E F+RM + N V++ ++++ C G L
Sbjct: 540 P--EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER----NVVSWSTMVSGYCKKGDLEM 593
Query: 312 GCLV-DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
++ D + G+ I + S DV +L AC+ G++ +G+R+ R V
Sbjct: 594 ARVIFDKM--PGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 648
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 231/437 (52%), Gaps = 55/437 (12%)
Query: 19 NSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC 78
N L + ++N+++ Y L+ SP +A L Y + L +++T+ LI+ C
Sbjct: 343 NLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGL--------LANNYTFPPLIKAC 394
Query: 79 VTLSYPN--LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELPERNLV 135
TL + +G +HA + GF +V +AL+ Y SL F + + LFD +P R++V
Sbjct: 395 TTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFY-SLNFDMGTARTLFDRIPNRDVV 453
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGAS 185
W MI G K G++E+AR LFE+MP RN +SW+ ++ Y+R+ R A
Sbjct: 454 LWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAG 513
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T P+E +++VL A GA+ +H Y ++ F++ I ++ L+D Y+KCGC+ SA
Sbjct: 514 TMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPI-LATALVDMYSKCGCVESA 572
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
L F+ I K+ +W ++ISG AM+G ++E F +M G +P TF++VL AC+
Sbjct: 573 LSTFQGIP--NKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACT 630
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI----- 338
H L HY CLVD++ RAG L +AEK I ++
Sbjct: 631 HARLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKF---IEEKMGGLGR 687
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D V LGAC +GN+E+G RV +K+ +M + G +VL YN+ G ++A+R+R
Sbjct: 688 GDANVWGAXLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVR 747
Query: 399 RVMDERNALKFPGRSLV 415
R++ E K PG S++
Sbjct: 748 RLISEXGMKKKPGCSII 764
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 211/382 (55%), Gaps = 39/382 (10%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFD 127
T+ FL R L+ P L +HA + G ++V+ +LV+MY + + +LFD
Sbjct: 63 LTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARRLFD 122
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P N V+WN ++ G K +L AR +F MP R+VVSW+ ++DG + A
Sbjct: 123 EIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAV 182
Query: 185 ------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+++T+++VL A G + + +H Y E+ GF +IR++ L
Sbjct: 183 FEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGF-PLNIRLATSL 241
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
+D YAKCG I AL++F + VE +++ W ++I G A+HGM + +++ F++M+ G+ P
Sbjct: 242 VDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVP 301
Query: 293 NRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIA 331
+ +T+L +L+AC HGGL HY CLVD+LGRAGRLE+A +
Sbjct: 302 DEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYGVV 361
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P + + V V LL AC HG VE+GE V R+++ ++ + G Y+ + NI A R+
Sbjct: 362 KSMPMKPS-VSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRW 420
Query: 392 VDAERLRRVMDERNALKFPGRS 413
+A++ R+VM+ER K PG S
Sbjct: 421 QEAKKARKVMEERGVKKVPGFS 442
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 226/422 (53%), Gaps = 42/422 (9%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+LFN ++ YSL +++F L+ ++ + + P D +T + L++ C +L
Sbjct: 73 ILFNAMIKGYSLNGPFEESFRLFSSMK------NRGIWP--DEYTLAPLLKACSSLGVLQ 124
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +H + VGF+ + ++ +Y S G ++D+ K+FDE+ +R+++ WN+MI G
Sbjct: 125 LGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFC 184
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
K G+++ LF +M R+VVSW ++ + R + A +P E T++
Sbjct: 185 KRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVT 244
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VLP + G+V + IH Y + G + V N L+D Y K G +A ++F+++
Sbjct: 245 VLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMP-- 302
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
RKN++SW ++ISG A++G G+ VE E M G++PN TF+ VL+ C+H GL
Sbjct: 303 RKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRE 362
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR+G + +A + +P + + LL AC
Sbjct: 363 LLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGSLLSACRT 422
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG+VE+ ++++++E N G+YVL+ N+ A R+ +R +M E+N K PG+S
Sbjct: 423 HGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMREKNVKKTPGQS 482
Query: 414 LV 415
++
Sbjct: 483 VI 484
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 236/445 (53%), Gaps = 48/445 (10%)
Query: 6 NVTTRIHSHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
+V T +H + ++ +HT LLFN+++ +S ++F + ++ TH+
Sbjct: 49 SVCTSLHQ-IPYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKM--THNIL 105
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
P D+FT+ L++ L +LG LHA ++ +GF H V L+ +Y + G ++
Sbjct: 106 P-----DNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKME 160
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D++K+FDE+ R +V WN+MI G K G+LE LF+ M R+VVSW ++ + +
Sbjct: 161 DANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKK 220
Query: 181 SNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
A EP + T++ VLP + G V + IH Y + +G I V N
Sbjct: 221 DGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGN 280
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+D Y KCG + +A K+F +++ +KN+VSW ++ISG ++G G+ VE FE+M + G+
Sbjct: 281 SLVDFYCKCGNLEAAWKVFNEMT--KKNVVSWNAMISGLGLNGKGELGVELFEKMARKGV 338
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
P+ TF+ VL C+H G HYGC+VD+LGR G +++A
Sbjct: 339 TPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAY 398
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + + + LL AC HG+ E+ E ++++ +E GN G+YVL+ N+ A
Sbjct: 399 DLIRNMPL-MPNAALWGALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEE 457
Query: 389 GRYVDAERLRRVMDERNALKFPGRS 413
++ + E++R +M K PG+S
Sbjct: 458 RKWNEVEKVRVLMQGVGIKKNPGQS 482
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 146/484 (30%), Positives = 235/484 (48%), Gaps = 107/484 (22%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N++ Y+ ++S ++ L+ Q++ + +RP + FT+ ++++C ++
Sbjct: 166 LWNSMFRGYAQSESYREVVFLFFQMKGM------DIRP--NCFTFPVVLKSCGKINALIE 217
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK---------------------- 124
G Q+H + K GF+ + +V T L++MY + G + D+ K
Sbjct: 218 GEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYIL 277
Query: 125 ---------LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
LFD PER++V WN+M++G ++ G++ AR LF EMP R+V+ W +L GY
Sbjct: 278 SADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGY 337
Query: 176 T-------------RMNRSN-----------------------------GASTEPSEITI 193
M N + P++ T+
Sbjct: 338 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 397
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ VL A + GA+ + +H Y E G ++ V N L+D YAKCG I +A+ +F
Sbjct: 398 VTVLSACARLGALDLGKWVHVYAESSGLKG-NVYVGNALMDMYAKCGIIENAISVFR--G 454
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
++ K+L+SW ++I G AMH G A+ F +M+ G KP+ +TF+ +L AC+H GL
Sbjct: 455 MDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 514
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VDML RAGRLEQA +P E D V+ LLGAC
Sbjct: 515 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVE-ADGVIWAGLLGAC 573
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
+ NVE+ E ++++E+E N +YV++ NI GR+ D RL+ M + K PG
Sbjct: 574 RIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPG 633
Query: 412 RSLV 415
SL+
Sbjct: 634 CSLI 637
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 152/380 (40%), Gaps = 74/380 (19%)
Query: 9 TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIY--------THSHS 60
T +S + SL H + F + F+SL+ PK LQ IY S
Sbjct: 31 TSNYSQTIPVFSLFHLSNSFPKIW-FFSLSGQPK--------LQPIYIGLESHPLKQSSH 81
Query: 61 PLRPLFDSFTYSFLIR----TCVTLSYPNLGT-----QLHAVISKVGFQSHVYVNTALVN 111
L P S T +R C+ + + T Q+ A I GFQ + Y+ LV
Sbjct: 82 GLNPCGRSPTGGGHLRLTALRCLRENMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVT 141
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
+ +L + + +LFD++P+ N+ WN M G + LF +M
Sbjct: 142 ICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQM----------- 190
Query: 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVS 229
G P+ T VL + + A+ + +H + K GF N F V
Sbjct: 191 ----------KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPF---VG 237
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
LID Y+ G + A K+F ++ +N+V+WTS+I+G+ + +A F+
Sbjct: 238 TTLIDMYSAGGTVGDAYKIFCEMF--ERNVVAWTSMINGYILSADLVSARRLFD------ 289
Query: 290 LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
L P R L + +V G + +A K+ +P+ DV+ +L
Sbjct: 290 LAPERDVVL------------WNIMVSGYIEGGDMVEARKLFXEMPNR--DVMFWNTVLK 335
Query: 350 ACSFHGNVEMGERVTRKVLE 369
+ +GNVE E + ++ E
Sbjct: 336 GYATNGNVEALEGLFEEMPE 355
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 229/446 (51%), Gaps = 60/446 (13%)
Query: 14 HLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS 68
HL + +L H T L+ +++ ++ D A Y Q+ TH P++P ++
Sbjct: 70 HLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQM---LTH---PIQP--NA 121
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT S L++ C +P HA+ K G SH+YV+T LV+ Y G + + KLFD
Sbjct: 122 FTLSSLLKACTL--HPARAVHSHAI--KFGLSSHLYVSTGLVDAYARGGDVASAQKLFDA 177
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---- 184
+PER+LV++ M+T K G L AR LFE M ++VV W ++DGY + N A
Sbjct: 178 MPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFF 237
Query: 185 -------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
P+EIT++AVL + Q GA+ + +H Y E G ++RV
Sbjct: 238 RKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKV-NVRVGTA 296
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
L+D Y KCG + A K+F+ +E K++V+W S+I G+ +HG A++ F M +G+K
Sbjct: 297 LVDMYCKCGSLEDARKVFD--VMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVK 354
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+ +TF++VL AC+H GL HYGC+V++LGRAGR+++A
Sbjct: 355 PSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYD 414
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ + E D V+ LL AC H NV +GE + ++ + G YVL+ N+ A
Sbjct: 415 LVRSMEVE-PDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAAR 473
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
+V ++R +M K PG S +
Sbjct: 474 NWVGVAKVRSMMKGSGVEKEPGCSSI 499
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 99/414 (23%), Positives = 149/414 (35%), Gaps = 134/414 (32%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+HA + + G H +N L Y SLG L S LF P N+ W +I +
Sbjct: 41 QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
+A S + +M + +P+ T+ ++L A +
Sbjct: 101 LFHHALSYYSQMLTHPI---------------------QPNAFTLSSLLKAC----TLHP 135
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER------------ 256
+ +H + K G ++ + VS L+D YA+ G + SA KLF D ER
Sbjct: 136 ARAVHSHAIKFGLSSH-LYVSTGLVDAYARGGDVASAQKLF-DAMPERSLVSYTAMLTCY 193
Query: 257 ------------------KNLVSWTSIISGFAMHGMGKAAVENFER-------MQKVGLK 291
K++V W +I G+A HG A+ F + ++
Sbjct: 194 AKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVR 253
Query: 292 PNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
PN +T ++VL++C G L G LVDM + G LE A K+
Sbjct: 254 PNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKV 313
Query: 331 ------------------------------------ALGI-PSEITDVVVRRILLGACSF 353
+G+ PS+IT V V L AC+
Sbjct: 314 FDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAV----LTACAH 369
Query: 354 HGNVEMGERVTRKVLEMERGNGGD-----YVLMYNILAGVGRYVDAERLRRVMD 402
G V G V M+ G G + Y M N+L GR +A L R M+
Sbjct: 370 AGLVSKGWEVFD---SMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSME 420
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 146/484 (30%), Positives = 235/484 (48%), Gaps = 107/484 (22%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N++ Y+ ++S ++ L+ Q++ + +RP + FT+ ++++C ++
Sbjct: 103 LWNSMFRGYAQSESYREVVFLFFQMKGM------DIRP--NCFTFPVVLKSCGKINALIE 154
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK---------------------- 124
G Q+H + K GF+ + +V T L++MY + G + D+ K
Sbjct: 155 GEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYIL 214
Query: 125 ---------LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
LFD PER++V WN+M++G ++ G++ AR LF EMP R+V+ W +L GY
Sbjct: 215 SADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGY 274
Query: 176 T-------------RMNRSN-----------------------------GASTEPSEITI 193
M N + P++ T+
Sbjct: 275 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 334
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ VL A + GA+ + +H Y E G ++ V N L+D YAKCG I +A+ +F
Sbjct: 335 VTVLSACARLGALDLGKWVHVYAESSGLKG-NVYVGNALMDMYAKCGIIENAISVFR--G 391
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
++ K+L+SW ++I G AMH G A+ F +M+ G KP+ +TF+ +L AC+H GL
Sbjct: 392 MDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 451
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VDML RAGRLEQA +P E D V+ LLGAC
Sbjct: 452 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVE-ADGVIWAGLLGAC 510
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
+ NVE+ E ++++E+E N +YV++ NI GR+ D RL+ M + K PG
Sbjct: 511 RIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPG 570
Query: 412 RSLV 415
SL+
Sbjct: 571 CSLI 574
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 132/317 (41%), Gaps = 53/317 (16%)
Query: 55 YTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV 114
Y P R L + F L+++C T + Q+ A I GFQ + Y+ LV +
Sbjct: 27 YLAPKPPHRLLEERFIS--LLQSCKTSKQVH---QIQAQIIANGFQYNEYITPKLVTICA 81
Query: 115 SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
+L + + +LFD++P+ N+ WN M G + LF +M
Sbjct: 82 TLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQM-------------- 127
Query: 175 YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVSNCL 232
G P+ T VL + + A+ + +H + K GF N F V L
Sbjct: 128 -------KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPF---VGTTL 177
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID Y+ G + A K+F ++ +N+V+WTS+I+G+ + +A F+ L P
Sbjct: 178 IDMYSAGGTVGDAYKIFCEMF--ERNVVAWTSMINGYILSADLVSARRLFD------LAP 229
Query: 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
R L + +V G + +A K+ +P+ DV+ +L +
Sbjct: 230 ERDVVL------------WNIMVSGYIEGGDMVEARKLFHEMPNR--DVMFWNTVLKGYA 275
Query: 353 FHGNVEMGERVTRKVLE 369
+GNVE E + ++ E
Sbjct: 276 TNGNVEALEGLFEEMPE 292
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/422 (31%), Positives = 223/422 (52%), Gaps = 41/422 (9%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T +NTL+ +S +P + ++ ++ Q + SP D TY FL++ L
Sbjct: 78 TFNWNTLIRAFSNTKNPNPSITVFIKMLQ---NGVSP-----DYLTYPFLVKATSKLLNQ 129
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG +H I K G + ++ +L++MY S + + K+FDE+P +NLVTWN M+ G
Sbjct: 130 ELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGY 189
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITIL 194
K G+L AR +F MP ++VVSW+ ++DGY + R + +E+T++
Sbjct: 190 AKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLV 249
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ L A GA+ + +++H Y + I + L+D YAKCG I AL +F S+
Sbjct: 250 SALCACAHLGALEHGRMMHRYIVENEL-PLTIVLQTSLVDMYAKCGAIHEALTVFRACSL 308
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+ +++ W +II G A HG+ K A+ F M+ VG+ P+ +T+L +L+ C+HGGL
Sbjct: 309 QEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAW 368
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HY C+VD L RAG++ +A + +P + T ++ +L G C
Sbjct: 369 YFFDCLRKHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSG-CMK 427
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG +++ + V R+++E++ + G YV + NI A R+ DA+ +R M+ + K PG S
Sbjct: 428 HGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFS 487
Query: 414 LV 415
+
Sbjct: 488 FI 489
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 237/466 (50%), Gaps = 74/466 (15%)
Query: 20 SLLHHTLLFNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHS----PLRPLFDSFTYSF 73
+L H L+FN L F ++ ++ KAF + ++ ++ P P D +T++
Sbjct: 73 NLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTS 132
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
+++ C L+ G ++H ++K G +S+++V +LV++Y +G + KLFDE+ R+
Sbjct: 133 VLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRD 192
Query: 134 LVTWNVMITG---------------------LVKW----------GELEYARSLFEEMPC 162
+V+WN +I+G LV W G LE AR LFE MP
Sbjct: 193 VVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPM 252
Query: 163 RNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQL 211
RNVVSW ++ GY + + A P+++T+++VL A GA+ +
Sbjct: 253 RNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKW 312
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
IH + +R + + N L D YAKCGC+ A +F ++ ++++SW+ II G AM
Sbjct: 313 IHRFI-RRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEM--HERDVISWSIIIMGLAM 369
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------- 309
+G A F M + GL+PN ++F+ +L AC+H GL
Sbjct: 370 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 429
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
HYGC+VD+L RAGRL+QAE + +P + +V+V LLG C + + E GERV ++LE
Sbjct: 430 HYGCVVDLLSRAGRLDQAESLINSMPMQ-PNVIVWGALLGGCRIYKDAERGERVVWRILE 488
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ + G V + N+ A +GR DA R M + ++K PG S +
Sbjct: 489 LDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWI 534
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 224/418 (53%), Gaps = 55/418 (13%)
Query: 22 LHHTLL--FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79
L H L+ +NT++ S++DSP+K LLY+ +++ + D + SF +++C+
Sbjct: 64 LSHPLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAA--------DPLSSSFAVKSCI 115
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
Y G Q+H I K G Q + TA++++Y D+ K+FDE+P R+ V WNV
Sbjct: 116 RFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNV 175
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
MI+ ++ A SLF+ M + + EP ++T L +L A
Sbjct: 176 MISCCIRNNRTRDALSLFDVM-------------------QGSSYKCEPDDVTCLLLLQA 216
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
A+ + IHGY +RG+ + + N LI Y++CGC+ A ++F+ + KN+
Sbjct: 217 CAHLNALEFGERIHGYIMERGYRD-ALNLCNSLISMYSRCGCLDKAYEVFKGMG--NKNV 273
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
VSW+++ISG AM+G G+ A+E FE M ++G+ P+ TF VL+ACS+ G+
Sbjct: 274 VSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHR 333
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HYGC+VD+LGRAG L++A ++ + + + D + R LLGAC HG+V
Sbjct: 334 MSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVK-PDSTMWRTLLGACRIHGHV 392
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+GERV ++E++ GDYVL+ NI + G + +R++M ++ PG S +
Sbjct: 393 TLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTI 450
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 226/452 (50%), Gaps = 76/452 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ + A +P+KA Y ++Q + FT+ F+++ G
Sbjct: 94 WTTMIRGFVEAKNPEKALEFYGLMRQRGVE--------LNKFTFLFVLKAYGLRPSYQEG 145
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + KVGF V+ AL++MY+ G + D+ LFDE+P N+VTWN MITG
Sbjct: 146 RIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGC 205
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNR--------------------------- 180
G+ E AR LF EMP RNV SW ++ GY+++
Sbjct: 206 GDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYV 265
Query: 181 SNGASTEPSE--------------ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
NG + E E I I ++L A Q GA+ + IH Y KR D+
Sbjct: 266 QNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAY-MKRSKLRNDV 324
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ L+D YAKCGCI +A +F ++ RKNL SW +++SG A+HG G AA+E F++M+
Sbjct: 325 FLDTALVDMYAKCGCIDTAFGVFN--TMPRKNLCSWNAMLSGLAIHGHGFAALELFKQME 382
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
G+ PN +TF++VL+ACSH G HYGC+VD+L R G +
Sbjct: 383 STGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLI 442
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+A+++ +P E +VV+ LL AC HG +GE V + ++ +GG YVL+ NI
Sbjct: 443 NEAKEMIRTMPLE-PNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNI 501
Query: 385 LAGVGRYVDAERLRRVMDERNA-LKFPGRSLV 415
A ++ + E+ R++M + K PG S +
Sbjct: 502 FAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSI 533
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 215/436 (49%), Gaps = 56/436 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+L+NT + YS S L+ ++++ S P D FTY LI+ C +
Sbjct: 136 TVLWNTYIKGYSENYSVSLTVSLFIRMKR------SDAVP--DKFTYPSLIKACSKVCGV 187
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G H + G V+V T+L+++Y G + + K+FDE+ ERN+V+W MI G
Sbjct: 188 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 247
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------------------- 184
+ +L AR LF+EMP +N VSW I+ GY + A
Sbjct: 248 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSAL 307
Query: 185 ---STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+ +P E +++++ A Q G++ + + Y K + V LID AKCG
Sbjct: 308 ISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGS 367
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A KLFE++ +++L+S+ S++ G ++HG G AV F RM GL P+ V F +L
Sbjct: 368 MDRATKLFEEMP--KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVIL 425
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
ACS GL HY C+VD+LGRAGRL++A ++ +P E
Sbjct: 426 TACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVE-P 484
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
LLGAC H ++E+GE V ++ E+E N G+YVL+ NI A +++D LR
Sbjct: 485 HAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRN 544
Query: 400 VMDERNALKFPGRSLV 415
M ER K PG S +
Sbjct: 545 KMRERGIRKIPGCSWI 560
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 131/321 (40%), Gaps = 60/321 (18%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
LR + + S L++ C T S Q+HA I + G ++ + + + SL
Sbjct: 67 LRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSY 123
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
++ +F+ + + V WN I G + + SLF RM RS
Sbjct: 124 TTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLF------------------IRMKRS 165
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+ P + T +++ A + V+ HG + G D+ V LID Y KCG
Sbjct: 166 DAV---PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGE 221
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A K+F+++ +N+VSWT++I+G+A A + F+ M P +
Sbjct: 222 ILCARKVFDEMG--ERNVVSWTAMIAGYASFSDLVEARKLFDEM------PEK------- 266
Query: 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV---------------VRRI 346
NA S + G + + G L A K+ +P DVV +
Sbjct: 267 NAVSWNAIISGYV-----KCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVS 321
Query: 347 LLGACSFHGNVEMGERVTRKV 367
L+ ACS G++E+ + V V
Sbjct: 322 LMSACSQMGSLELAKWVDDYV 342
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ Y +P +A L+ ++ + +RP D T + C + LG
Sbjct: 194 WNTLIGGYVRRGNPAEALELFWRM----VAEDAVVRP--DEVTMIAAVSGCGQMRDLELG 247
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH + G V + AL++MY+ G L+ + +F+ + R +V+W MI G K+
Sbjct: 248 RRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKF 307
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS----------NGASTEPSEITILAVL 197
G ++ AR +F+EMP R+V W ++ GY + + AS P EIT++ +L
Sbjct: 308 GLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLL 367
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ +H Y EK F + + LID YAKCG I A+ +F++I K
Sbjct: 368 TACSQLGALEMGMWVHRYIEKHRL-VFSVALGTSLIDMYAKCGNIEKAIHIFKEIP--EK 424
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N ++WT++I G A HG A+E+F M ++G KP+ +TF+ VL+AC H GL
Sbjct: 425 NALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFF 484
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C++D+LGRAG L++AE++ +P E D VV + AC G
Sbjct: 485 SLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPME-PDAVVWGAIFFACRMQG 543
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ +GE+ K++E++ + G YVL+ N+ A A+++R +M K PG S +
Sbjct: 544 NISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCI 603
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 160/354 (45%), Gaps = 53/354 (14%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP D T+ FL++ C L G A + ++G S V+V A + G ++D+
Sbjct: 122 RP--DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDA 179
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+LFD P R+LV+WN +I G V+ G A LF M + V
Sbjct: 180 RRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAV---------------- 223
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
P E+T++A A+ G +R+ +L +HG+ + G + +R+ N L+D Y KC
Sbjct: 224 ---VRPDEVTMIA---AVSGCGQMRDLELGRRLHGFVDSDGVSC-TVRLMNALMDMYIKC 276
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + A +FE I E + +VSWT++I GFA G+ A + F+ M P R F
Sbjct: 277 GSLEMAKSVFERI--EHRTVVSWTTMIVGFAKFGLMDDARKVFDEM------PERDVF-- 326
Query: 300 VLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
NA G + + L +++A +P EIT V LL ACS G +EM
Sbjct: 327 PWNALMTGYVQCKQCKEALSLFHEMQEASV----VPDEITMVN----LLTACSQLGALEM 378
Query: 360 GERVTRKV----LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
G V R + L G + MY A G A + + + E+NAL +
Sbjct: 379 GMWVHRYIEKHRLVFSVALGTSLIDMY---AKCGNIEKAIHIFKEIPEKNALTW 429
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 221/420 (52%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L++ Y +KA +YK ++ ++P D T L+ +C L N G
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLMES------EGVKP--DDVTMIGLVSSCSMLGDLNRG 276
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + + + G + + + AL++M+ G + ++ ++FD L +R +V+W MI+G +
Sbjct: 277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARC 336
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G L+ +R LF++M ++VV W ++ G + R A +T+P EIT++ L
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCL 396
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ IH Y EK + ++ + L+D YAKCG I AL +F I + +
Sbjct: 397 SACSQLGALDVGIWIHRYIEKYSL-SLNVALGTSLVDMYAKCGNISEALSVFHGI--QTR 453
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N +++T+II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+
Sbjct: 454 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 513
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY +VD+LGRAG LE+A+++ +P E D V LL C HG
Sbjct: 514 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME-ADAAVWGALLFGCRMHG 572
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NVE+GE+ +K+LE++ + G YVL+ + + DA+R RR+M+ER K PG S +
Sbjct: 573 NVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 177/382 (46%), Gaps = 83/382 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + +S +++PK++FLLYKQ+ + H RP D FTY L + C L +LG
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLR---HGCCESRP--DHFTYPVLFKVCADLRLSSLG 175
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + K+ + +V+ A ++M+ S G ++++ K+FDE P R+LV+WN +I G K
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE E A +++ M V +P ++T++ ++ + G +
Sbjct: 236 GEAEKAIYVYKLMESEGV---------------------KPDDVTMIGLVSSCSMLGDLN 274
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + Y ++ G I + N L+D ++KCG I A ++F+++ E++ +VSWT++IS
Sbjct: 275 RGKEFYEYVKENGLR-MTIPLVNALMDMFSKCGDIHEARRIFDNL--EKRTIVSWTTMIS 331
Query: 268 GFAMHGM-------------------------------GKAAVENFERMQKVGLKPNRVT 296
G+A G+ G+ A+ F+ MQ KP+ +T
Sbjct: 332 GYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEIT 391
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+ L+ACS G L G LVDM + G + +A + GI
Sbjct: 392 MIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGI- 450
Query: 336 SEITDVVVRRILLGACSFHGNV 357
+ + + ++G + HG+
Sbjct: 451 -QTRNSLTYTAIIGGLALHGDA 471
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 140/440 (31%), Positives = 225/440 (51%), Gaps = 46/440 (10%)
Query: 13 SHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++L N LL+H N+++ YS + +P K+F Y + ++ SP D
Sbjct: 57 TNLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSP-----D 111
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
++T++FL+RTC L G +H + K GF+ +V T LV MY LG L +FD
Sbjct: 112 NYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFD 171
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E +LVT M+ K G++++AR +F+EMP R+ V+W ++ GY + RS A
Sbjct: 172 GAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDV 231
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+ +E++++ VL A + + + +H Y E+ + + L+D YA
Sbjct: 232 FHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVR-MTVTLGTALVDMYA 290
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + A+++F ++ +N+ +W+S I G AM+G G+ +++ F M++ G++PN +TF
Sbjct: 291 KCGNVDRAMQVF--WGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITF 348
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+SVL CS GL HYG +VDM GRAGRL++A +P
Sbjct: 349 ISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMP 408
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
V LL AC + N E+GE RK++E+E N G YVL+ NI A +
Sbjct: 409 MR-PHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVS 467
Query: 396 RLRRVMDERNALKFPGRSLV 415
LR+ M + K PG S++
Sbjct: 468 SLRQTMKAKGVKKLPGCSVI 487
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 205/383 (53%), Gaps = 36/383 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT+ F++++ V L +G +H +I ++G Q +YV T+L+ +Y G + D+ K+F
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D + R++ +WN ++ G K G ++ A ++FE MP RN+VSWT ++ GY++ + A
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
P+ +TI++VLPA Q + + IH + G N+ + V L
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS-NASVLIALTA 311
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YAKCG + A F+ ++ KNL++W ++I+ +A +G G AV F M + G++P+
Sbjct: 312 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 371
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF +L+ CSH GL HY C+ D+LGRAGRL +A K+
Sbjct: 372 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 431
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + LL AC H N+EM E RK+ +E N G+YVL+ N+ A GR+
Sbjct: 432 EMPMPAGPSIWGS-LLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQ 490
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
+ ++LR ++ + K PG S +
Sbjct: 491 EVDKLRAIVKSQGTKKSPGCSWI 513
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 205/383 (53%), Gaps = 36/383 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT+ F++++ V L +G +H +I ++G Q +YV T+L+ +Y G + D+ K+F
Sbjct: 170 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 229
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D + R++ +WN ++ G K G ++ A ++FE MP RN+VSWT ++ GY++ + A
Sbjct: 230 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 289
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
P+ +TI++VLPA Q + + IH + G N+ + V L
Sbjct: 290 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS-NASVLIALTA 348
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YAKCG + A F+ ++ KNL++W ++I+ +A +G G AV F M + G++P+
Sbjct: 349 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 408
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF +L+ CSH GL HY C+ D+LGRAGRL +A K+
Sbjct: 409 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 468
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + LL AC H N+EM E RK+ +E N G+YVL+ N+ A GR+
Sbjct: 469 EMPMPAGPSIWGS-LLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQ 527
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
+ ++LR ++ + K PG S +
Sbjct: 528 EVDKLRAIVKSQGTKKSPGCSWI 550
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 55/287 (19%)
Query: 51 LQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110
LQ + +P P S+ F T L+ LG Q+HA + G Q V + +V
Sbjct: 55 LQNLLQPLSAPGPPPILSYAPVFQFLT--GLNMLKLGHQVHAHMLLRGLQPTALVGSKMV 112
Query: 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
Y S G + S +F+ + E + + +N MI ++G E + + M SW
Sbjct: 113 AFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMH-----SWGF 167
Query: 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
D +T P + L ++W + +HG + G FD+ V+
Sbjct: 168 TGDYFTF----------PFVLKSSVELLSVWMG------KCVHGLILRIGLQ-FDLYVAT 210
Query: 231 CLIDTYAKCGCIFSALKLFEDISV--------------------------ER---KNLVS 261
LI Y KCG I A K+F+++++ ER +N+VS
Sbjct: 211 SLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVS 270
Query: 262 WTSIISGFAMHGMGKAAVENFERMQK--VGLKPNRVTFLSVLNACSH 306
WT++ISG++ G+ + A+ F+ M K G++PN VT +SVL AC+
Sbjct: 271 WTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQ 317
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 225/410 (54%), Gaps = 53/410 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ YS++ SP++ F LY+++++ P PL + SF++++C+ +S G
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRR----RGVPPNPL----SSSFVMKSCIRISSLMGG 187
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+HA I + G QS + T L+++Y +++ K+FDE+P+ + V+WNV+I+ +
Sbjct: 188 LQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHN 247
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
A +F+ M DG+ EP ++T L +L A GA+
Sbjct: 248 RRTRDALRMFDIM--------QSTADGF-----------EPDDVTCLLLLQACANLGALE 288
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H Y E+ G++ + + N LI Y++CG + A +F+ ++ +N+VSW+++IS
Sbjct: 289 FGERVHNYIEEHGYDGA-LNLCNSLITMYSRCGRLEKAYSIFK--RMDERNVVSWSAMIS 345
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
GFAMHG G+ A+E FE+MQ++G+ P+ T VL+ACSH GL
Sbjct: 346 GFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIE 405
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VD+LGRAG L+QA ++ + + + D + R LLGAC H + +GERV
Sbjct: 406 PNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIK-PDSTLWRTLLGACRIHRHATLGERVIG 464
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++E++ GDYVL+ NI + VG + LR+ M E+ PG S +
Sbjct: 465 HLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTI 514
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 233/488 (47%), Gaps = 115/488 (23%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
++N + YS +S K +L++Q++ L + + FT+ ++++CV ++
Sbjct: 18 IWNAMFRGYSQNESHKDVIVLFRQMKG--------LDVMPNCFTFPVILKSCVKINALKE 69
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---------------------------- 118
G ++H + K GF+++ +V T L++MY S G
Sbjct: 70 GEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYIT 129
Query: 119 ---LKDSSKLFDELPERNLVTWNVMITGLVK---------------------W------- 147
L + +LFD PER++V WN MI+G ++ W
Sbjct: 130 CCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGY 189
Query: 148 ---GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE---------------PS 189
G++ LFEEMP RNV SW ++ GYTR NG +E P+
Sbjct: 190 ASNGDVMACERLFEEMPERNVFSWNALIGGYTR----NGCFSEVLSAFKRMLVDGTVVPN 245
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ T++ VL A + GA+ + +H Y E G+ ++ V N L+D YAKCG + +AL +F
Sbjct: 246 DATLVNVLSACARLGALDLGKWVHVYAESHGYKG-NVYVRNALMDMYAKCGVVETALDVF 304
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ S++ K+L+SW +II G A+HG G A+ F M+ G P+ +TF+ +L AC+H GL
Sbjct: 305 K--SMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGL 362
Query: 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
HYGC+VD+LGRAG L A +P E D V+ L
Sbjct: 363 VEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIE-ADAVIWAAL 421
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
LGAC + NVE+ E K++E E N +YV++ NI GR+ D RL+ M +
Sbjct: 422 LGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFK 481
Query: 408 KFPGRSLV 415
K PG SL+
Sbjct: 482 KLPGCSLI 489
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 24/151 (15%)
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
++++ K+FD++PE N WN M G + + LF +M
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQM------------------ 42
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
G P+ T +L + + A++ + +H + K GF A + V+ LID YA
Sbjct: 43 ---KGLDVMPNCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRA-NPFVATTLIDMYAS 98
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGF 269
G I +A ++F ++ +ER N+++WT++I+G+
Sbjct: 99 GGAIHAAYRVFGEM-IER-NVIAWTAMINGY 127
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 211/373 (56%), Gaps = 36/373 (9%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L N+G +H++ K+G +S++ + AL+ MY G + + KLFDE +L
Sbjct: 383 LSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDL 442
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGA 184
++WN MI+G +K ++ A+++F+ MP ++VVSW+ ++ GY + +
Sbjct: 443 ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMS 502
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
+P E T+++V+ A + A+ + +H Y ++ G ++ + LID Y KCGC+ +
Sbjct: 503 GFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLT-INVILGTTLIDMYMKCGCVET 561
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
AL++F + K + +W ++I G AM+G+ +++++ F M+K + PN +TF+ VL AC
Sbjct: 562 ALEVF--YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 619
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
H GL HYGC+VD+LGRAG+L++AE++ +P DV
Sbjct: 620 RHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPM-TPDVA 678
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
LLGAC HG+ EMG RV RK++E++ + G +VL+ NI A G++ D +R +M
Sbjct: 679 TWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMT 738
Query: 403 ERNALKFPGRSLV 415
+ LK PG S++
Sbjct: 739 KHRVLKIPGCSMI 751
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/493 (23%), Positives = 191/493 (38%), Gaps = 143/493 (29%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y +SP AF LYK + Y + D++TY LI+ C Q+H +
Sbjct: 188 YIQTNSPHFAFTLYKSMLSNYLGA--------DNYTYPLLIQACSIRRSEWEAKQVHNHV 239
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K+GF S VYV L+N + + D+ ++F+E + V+WN ++ G ++ G +E A+
Sbjct: 240 LKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAK 299
Query: 155 SLFEEMPCRNV-------------------------------VSWTGILDGYTRMNRSNG 183
++ +MP R++ V+W+ ++ + +
Sbjct: 300 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 359
Query: 184 A----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
A E+ ++ L A V +LIH K G ++ I + N LI
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY-INLQNALI 418
Query: 234 DTYAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTS 264
Y+KCG I A KLF++ S+ K++VSW+S
Sbjct: 419 YMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 478
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG----------- 312
+ISG+A + + + F+ MQ G KP+ T +SV++AC+ L G
Sbjct: 479 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 538
Query: 313 ---------CLVDMLGRAGRLEQAEKIALGI----------------------------- 334
L+DM + G +E A ++ G+
Sbjct: 539 LTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFS 598
Query: 335 --------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER--GNGGDYVLMYNI 384
P+EIT + V LGAC G V+ G+ ++ + N Y M ++
Sbjct: 599 NMKKCHVTPNEITFMGV----LGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDL 654
Query: 385 LAGVGRYVDAERL 397
L G+ +AE L
Sbjct: 655 LGRAGKLQEAEEL 667
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 204/377 (54%), Gaps = 59/377 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ TY+ +++ C T G ++H I + G+ ++V AL+ MY G LK++ KLF
Sbjct: 297 NKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLF 356
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+LP R++VTW M+TG + G + A LF M + +
Sbjct: 357 GDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI--------------------- 395
Query: 187 EPSEITILAVL-----PAIWQNGAVRNCQLIH-GYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+P ++T + L PA Q G + QL+H GY + D+ + + L+ YAKCG
Sbjct: 396 KPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGY-------SLDVYLQSALVSMYAKCG 448
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ A +F +S +N+V+WT++I+G A HG + A+E FE+M+K G+KP++VTF SV
Sbjct: 449 SMDDARLVFNQMS--ERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSV 506
Query: 301 LNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
L+AC+H GL HY C VD+LGRAG LE+AE + L +P +
Sbjct: 507 LSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQ- 565
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
V LL AC H +VE GER VL+++ + G YV + NI A GRY DAE++R
Sbjct: 566 PGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVR 625
Query: 399 RVMDERNALKFPGRSLV 415
+VM++R+ +K PG+S +
Sbjct: 626 QVMEKRDVVKEPGQSWI 642
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 149/310 (48%), Gaps = 47/310 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T+ L+ +G ++H I+K G + V T+LV MY G + + +F
Sbjct: 196 DKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIF 255
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D+LPE+N+VTW ++I G + G+++ A L E+M A
Sbjct: 256 DKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKM---------------------QQAEV 294
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P++IT ++L A+ + + +H Y + G+ +I V N LI Y KCG + A
Sbjct: 295 APNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGR-EIWVVNALITMYCKCGGLKEAR 353
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
KLF D+ +++V+WT++++G+A G A++ F RMQ+ G+KP+++TF S L +CS
Sbjct: 354 KLFGDLP--HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSS 411
Query: 307 GG------------LHYG---------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
+H G LV M + G ++ A ++ SE +VV
Sbjct: 412 PAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDA-RLVFNQMSE-RNVVAWT 469
Query: 346 ILLGACSFHG 355
++ C+ HG
Sbjct: 470 AMITGCAQHG 479
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 45/289 (15%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S + L++ C L G ++HA I K G Q + Y+ L++MY G L D+ ++FD
Sbjct: 96 SDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD 155
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ +RN+V+W MI V + A +E M A +
Sbjct: 156 GIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL---------------------AGCK 194
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P ++T +++L A ++ Q +H K G + RV L+ YAKCG I A
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE-LEPRVGTSLVGMYAKCGDISKAQV 253
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-- 305
+F+ + KN+V+WT +I+G+A G A+E E+MQ+ + PN++T+ S+L C+
Sbjct: 254 IFDKLP--EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTP 311
Query: 306 ----HG-GLH-------YG-------CLVDMLGRAGRLEQAEKIALGIP 335
HG +H YG L+ M + G L++A K+ +P
Sbjct: 312 LALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 211/382 (55%), Gaps = 37/382 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FTY FL++ C L +LG Q+H + + G +S+ V +L+ MY G L + K+F
Sbjct: 117 DRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVF 176
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D + ER++V+WN +I+ + G++ AR++F MP + VVSWT ++ GYT +GA
Sbjct: 177 DGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVE 236
Query: 187 ----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP +++I+AVLPA Q GA+ + I+ Y + + V N L++ Y
Sbjct: 237 AFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQM-LRETYVCNALVEMY 295
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRV 295
AKCGCI AL+LF ++ K+++SW++++ G A HG + AV+ F M++ G +KPN +
Sbjct: 296 AKCGCIDQALQLFNGMA--EKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGI 353
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ +L+ACSH GL HYGC+VD+L R+G++++ +
Sbjct: 354 TFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISD 413
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P D + +L AC HG+V+ +++ +E + G+ V++ N+ A R+ +
Sbjct: 414 MPLP-ADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSE 472
Query: 394 AERLRRVMDERNALKFPGRSLV 415
R+ + R+ K PG SL+
Sbjct: 473 VANTRKAIRSRSMRKTPGCSLI 494
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 217/416 (52%), Gaps = 59/416 (14%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-DSFTYSFLIRTCVTLSY 83
+FNT++ + A+ P+KAF YK++Q+ R L DSFT+SFL++ C L
Sbjct: 53 AFIFNTMIRGFGKANDPRKAFDYYKRMQE---------RGLVSDSFTFSFLLKVCGQLGL 103
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
LG +H K G SHV+V LV+MY + ++ S +LF+E+P LV WN++I
Sbjct: 104 VLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDC 163
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V G+ A +F M + EP E T + +L A
Sbjct: 164 HVSCGKFNEALEMFSRMLKFGI---------------------EPDEATFVVILSACSAL 202
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA+ + +H G V+N L+D YAKCG + A ++F ++ +KN V+W
Sbjct: 203 GALDFGRWVHSCISNIGHGCI-TEVNNSLLDMYAKCGALQEAFEIFNGMN--KKNTVTWN 259
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGL------------- 309
++I G A HG A+ F M + L P+ +TFL VL+ACSHGG+
Sbjct: 260 TMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACSHGGMVDKGWRFFDIMKK 319
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HYGC+VD+LGRAG +E+A ++ +P + + +V R LL AC HGNVE+G
Sbjct: 320 EYHIQPTIKHYGCMVDILGRAGFVEEAYRLISNMPMQ-CNAIVWRTLLAACRLHGNVELG 378
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPGRSLV 415
++V +++LE+E + DYVL+ N A GR+ +A R+R+ M +R K PG S+V
Sbjct: 379 KQVRKQLLELEPDHSSDYVLLANTYASAGRWNEAMRVRKTMHKRGVQKPEPGNSVV 434
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 36/239 (15%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVL 197
G++ YA S+FE++ + + ++ G+ + N R T +L
Sbjct: 36 GDMNYAVSVFEKIGDPDAFIFNTMIRGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLL 95
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
Q G V +L+H KRG N+ + V N L+ Y I ++ +LFE+I
Sbjct: 96 KVCGQLGLVLLGRLMHCSTLKRGLNS-HVFVRNTLVHMYGTFKDIEASRQLFEEIP--NP 152
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG--------- 308
LV+W II G A+E F RM K G++P+ TF+ +L+ACS G
Sbjct: 153 ELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVH 212
Query: 309 -----LHYGC-------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
+ +GC L+DM + G L++A +I G+ + T V ++LG S HG
Sbjct: 213 SCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNT-VTWNTMILGLAS-HG 269
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 200/358 (55%), Gaps = 37/358 (10%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGLVKW 147
QLH+++ + G + + + +LV Y S G + + ++FDE ++V+WNVMI G VK
Sbjct: 92 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G+L AR LF+ MP RNVVSWT ++ Y +M + A EP + +L+VL
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A G V + +H + +RG +I + N +ID Y KCG + AL++FE +E+K
Sbjct: 212 SACGDLGVVDLGEWVHRFVLRRGL-CQEIPLMNAIIDMYVKCGSVKKALEVFE--GMEQK 268
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++V+WT++I+GFA+HG+G AVE F RM+K + PN +TFL+VL+ CSH GL
Sbjct: 269 SIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYF 328
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC++D+LGRAG L +A + +P + + + LL A HG
Sbjct: 329 KTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFK-ANAAIWGALLAAARTHG 387
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ E+GE+ ++E+E N G+Y+L+ NI A R+ LR M +R PG S
Sbjct: 388 DTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGAS 445
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 40/244 (16%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y+ P++A +++++Q + P D ++ C L +LG +H +
Sbjct: 179 YAQMKQPEEAIEVFRRMQV------EGIEP--DGVALLSVLSACGDLGVVDLGEWVHRFV 230
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
+ G + + A+++MYV G +K + ++F+ + ++++VTW MI G G A
Sbjct: 231 LRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAV 290
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ---- 210
LF M NV P++IT LAVL G +
Sbjct: 291 ELFRRMEKENV---------------------SPNDITFLAVLSVCSHVGLTDLGRWYFK 329
Query: 211 -LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
++ Y K + C+ID + GC+ A L +D+ + N W ++++
Sbjct: 330 TMVSQYKIKPRVEHY-----GCMIDLLGRAGCLMEARGLIQDMPF-KANAAIWGALLAAA 383
Query: 270 AMHG 273
HG
Sbjct: 384 RTHG 387
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 211/373 (56%), Gaps = 36/373 (9%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L N+G +H++ K+G +S++ + AL+ MY G + + KLFDE +L
Sbjct: 248 LSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDL 307
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGA 184
++WN MI+G +K ++ A+++F+ MP ++VVSW+ ++ GY + +
Sbjct: 308 ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMS 367
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
+P E T+++V+ A + A+ + +H Y ++ G ++ + LID Y KCGC+ +
Sbjct: 368 GFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGL-TINVILGTTLIDMYMKCGCVET 426
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
AL++F + K + +W ++I G AM+G+ +++++ F M+K + PN +TF+ VL AC
Sbjct: 427 ALEVF--YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 484
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
H GL HYGC+VD+LGRAG+L++AE++ +P DV
Sbjct: 485 RHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMT-PDVA 543
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
LLGAC HG+ EMG RV RK++E++ + G +VL+ NI A G++ D +R +M
Sbjct: 544 TWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMT 603
Query: 403 ERNALKFPGRSLV 415
+ LK PG S++
Sbjct: 604 KHRVLKIPGCSMI 616
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 120/522 (22%), Positives = 204/522 (39%), Gaps = 148/522 (28%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
+ T RI + + TN ++N ++ Y +SP AF LYK + Y +
Sbjct: 29 DYTRRIFNFIENTN-----CFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGA------- 76
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D++TY LI+ C Q+H + K+GF S VYV L+N + + D+ ++
Sbjct: 77 -DNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRV 135
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV-------------------- 165
F+E + V+WN ++ G ++ G +E A+ ++ +MP R++
Sbjct: 136 FNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEAC 195
Query: 166 -----------VSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNG 204
V+W+ ++ + + A E+ ++ L A
Sbjct: 196 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 255
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI------------ 252
V +LIH K G ++ I + N LI Y+KCG I A KLF++
Sbjct: 256 VVNMGKLIHSLSLKIGTESY-INLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMI 314
Query: 253 -----------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
S+ K++VSW+S+ISG+A + + + F+ MQ G KP+
Sbjct: 315 SGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDET 374
Query: 296 TFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T +SV++AC+ L G L+DM + G +E A ++ G+
Sbjct: 375 TLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM 434
Query: 335 -------------------------------------PSEITDVVVRRILLGACSFHGNV 357
P+EIT + V LGAC G V
Sbjct: 435 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGV----LGACRHMGLV 490
Query: 358 EMGERVTRKVLEMER--GNGGDYVLMYNILAGVGRYVDAERL 397
+ G+ ++ + N Y M ++L G+ +AE L
Sbjct: 491 DEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 532
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 223/424 (52%), Gaps = 48/424 (11%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T N+++ Y+ + P++A L Y QL + L P D FT+ L ++C L
Sbjct: 43 TFTCNSIIRGYTNKNLPRQAILFY-QLMML-----QGLDP--DRFTFPSLFKSCGVLCE- 93
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G QLH +K+GF S Y+ L+NMY + G L + K+FD++ +++V+W MI
Sbjct: 94 --GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 151
Query: 145 VKWGELEYARSLFEEMP-CRNVVSWTGILDGYTR----------MNRSNGASTEPSEITI 193
+W A LF M N+ W +++G+ N + + ++T+
Sbjct: 152 AQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTM 211
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
++L A GA+ + +H Y EK D+ + L+D YAKCG I SA+++F+++
Sbjct: 212 ASLLIACTHLGALELGKWLHVYIEKEKIEV-DVALGTALVDMYAKCGSIESAMRVFQEMP 270
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
K++++WT++I G AM G G A+E F MQ +KP+ +TF+ VL ACSH GL
Sbjct: 271 --EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 328
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VDMLGRAGR+ +AE + +P D V LL AC
Sbjct: 329 IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMA-PDYFVLVGLLSAC 387
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HGN+ + ER ++++E++ NGG YVL+ NI + + + A+++R +M ERN K PG
Sbjct: 388 RIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPG 447
Query: 412 RSLV 415
S +
Sbjct: 448 CSAI 451
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 108/263 (41%), Gaps = 71/263 (26%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
V L G L YAR +F ++P + I+ GYT N A +P
Sbjct: 17 VAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDP 76
Query: 189 SEITILAVLPAIWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
T P+++++ G + + +H + K GF A D + N L++ Y+ CGC+ SA K
Sbjct: 77 DRFT----FPSLFKSCGVLCEGKQLHCHSTKLGF-ASDAYIQNTLMNMYSNCGCLVSARK 131
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER----------------------- 284
+F+ + K++VSW ++I +A + A++ F R
Sbjct: 132 VFDKMV--NKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDY 189
Query: 285 ---------MQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CL 314
MQ G+K ++VT S+L AC+H G L G L
Sbjct: 190 EEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTAL 249
Query: 315 VDMLGRAGRLEQAEKIALGIPSE 337
VDM + G +E A ++ +P +
Sbjct: 250 VDMYAKCGSIESAMRVFQEMPEK 272
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 232/436 (53%), Gaps = 47/436 (10%)
Query: 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKK---AFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
LL S LFNT + +S A P + LL+ ++ + L P ++FT+
Sbjct: 44 LLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVL------SLAP--NNFTF 95
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
+FL + C +LG Q H ++ K F+ V+V +++ Y G L D+ +FDE E
Sbjct: 96 TFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSE 155
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------- 184
++V+WN MI G ++ G + A SLF +M RN +SW ++ GY + + A
Sbjct: 156 LDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREM 215
Query: 185 ---STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
EP+ +++VL A Q GA+ + +H Y K+ D +S LID YAKCG
Sbjct: 216 QMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRV-DSILSAALIDMYAKCGS 274
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A++ F + ++++ ++T+ ISG AM+G + A++ FE+M+ G+ P+ V++++VL
Sbjct: 275 IDLAMQAFS--TSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVL 332
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
ACSH G HY C+VD+LGRAG LE+AEK +P +
Sbjct: 333 CACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIK-P 391
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D V+ LLGAC +GN EMG+RV ++E ++ + G Y+L+ NI A + DAE++R+
Sbjct: 392 DNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRK 451
Query: 400 VMDERNALKFPGRSLV 415
M R + PG SL+
Sbjct: 452 TMRRRKVDRVPGCSLI 467
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 227/490 (46%), Gaps = 111/490 (22%)
Query: 20 SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79
SL+H +NT++ Y +L+ +L H + P D+FT +I+ C
Sbjct: 77 SLIH----WNTIIKCYVENQFSHDGIVLFHEL----VHEYLP-----DNFTLPCVIKGCA 123
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD------------ 127
L G Q+H + K+GF S V+V +LVNMY G + + K+FD
Sbjct: 124 RLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNS 183
Query: 128 -------------------ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
E+PER+ +W V++ GL K G++E AR LF++MPCRN+VSW
Sbjct: 184 LIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSW 243
Query: 169 TGILDGYTRMNRSNGA-----------------------------------------STE 187
+++GY + + A +
Sbjct: 244 NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR 303
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
PS T+++VL A+ + + IH Y EK GF D + LI+ YAKCGCI SAL
Sbjct: 304 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFE-LDGILGTSLIEMYAKCGCIESALT 362
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+F ++++K + WT+II G +HGM A+ F M K GLKPN + F+ VLNAC+H
Sbjct: 363 VFR--AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 420
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGCLVD+L RAG LE+A+ +P V+
Sbjct: 421 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 480
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LLG HG +++GE ++V+E+ G Y+L+ N+ A G + +R +M +R
Sbjct: 481 -LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRG 539
Query: 406 ALKFPGRSLV 415
K PG S V
Sbjct: 540 FRKDPGCSSV 549
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 111/264 (42%), Gaps = 59/264 (22%)
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L P QLHA K +H +V++ L+ +Y P+ N
Sbjct: 23 LCAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSD--------------PKIN------- 61
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------STEPSEI 191
+L YARS+F+ + R+++ W I+ Y S+ P
Sbjct: 62 --------DLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNF 113
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ V+ + G V+ + IHG K GF + D+ V L++ Y+KCG I A K+F+
Sbjct: 114 TLPCVIKGCARLGVVQEGKQIHGLALKIGFGS-DVFVQGSLVNMYSKCGEIDCARKVFDG 172
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311
+ K++V W S+I G+A G A++ FE M P R F +
Sbjct: 173 MI--DKDVVLWNSLIDGYARCGEIDIALQLFEEM------PERDAF------------SW 212
Query: 312 GCLVDMLGRAGRLEQAEKIALGIP 335
LVD L + G++E A K+ +P
Sbjct: 213 TVLVDGLSKCGKVESARKLFDQMP 236
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 224/422 (53%), Gaps = 44/422 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+FN L+ +S P KAF Y Q+ + S + P D+ T+ FLI+ +
Sbjct: 83 FVFNLLIRCFSTGAEPSKAFGFYTQMLK------SRIWP--DNITFPFLIKASSEMECVL 134
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G Q H+ I + GFQ+ VYV +LV+MY + GF+ + ++F ++ R++V+W M+ G
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
K G +E AR +F+EMP RN+ +W+ +++GY + N A +E +++
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ + GA+ + + Y K ++ + L+D + +CG I A+ +FE +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTV-NLILGTALVDMFWRCGDIEKAIHVFEGLP-- 311
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
+ +SW+SII G A+HG A+ F +M +G P VTF +VL+ACSHGGL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VDMLGRAG+L +AE L + + + + LLGAC
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVK-PNAPILGALLGACKI 430
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ N E+ ERV +++++ + G YVL+ NI A G++ E LR +M E+ K PG S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490
Query: 414 LV 415
L+
Sbjct: 491 LI 492
>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 491
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 197/362 (54%), Gaps = 39/362 (10%)
Query: 89 QLHAVISKVGFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+H ++ K G S VY +T+L +Y G L D+ K+FD +PE +V+WNV++ G V
Sbjct: 86 QIHTLLVKSGLPRSVSGVYASTSLARVYARHGRLADARKVFDGMPETTVVSWNVLLDGFV 145
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITIL 194
+ G+L+ A LF EM RNVVSW ++ G+ R+ R+ A P E T++
Sbjct: 146 RAGDLDAAWELFVEMTERNVVSWNTVMVGFARLGRAQEAVELFVEMTTVYGLVPDEATMV 205
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ A+ G + + HGY +R F+ D + LI+ Y +CG + +A F SV
Sbjct: 206 GFVSAVRNIGLLGLGRSAHGYVIRREFS-LDGALGVGLINMYTRCGSMTAAYLCFS--SV 262
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
KN+ WTS I GFA HG A+ F M+++G++PN VTF++VLNACSHGGL
Sbjct: 263 TSKNVEHWTSAIGGFAAHGHPDMALRLFAEMRELGIEPNDVTFVAVLNACSHGGLVDEGF 322
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGCLVD+LGRAG LE+A +A +P + V LL AC
Sbjct: 323 KYFNMMRKMGIRPSIQHYGCLVDLLGRAGFLEEAFNLASSLPKD-PGFVTWSSLLAACQT 381
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGNV+M E +K+ + E +G YVL+ N A G++ D +R R M+ A+K PG S
Sbjct: 382 HGNVDMAEVAAQKLADAEPNHGSSYVLLSNAYARAGQWEDLKRTRSRMEAHRAVKKPGLS 441
Query: 414 LV 415
+
Sbjct: 442 WI 443
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 30/246 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ ++ ++A L+ ++ +Y L P D T + + LG
Sbjct: 168 WNTVMVGFARLGRAQEAVELFVEMTTVYG-----LVP--DEATMVGFVSAVRNIGLLGLG 220
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
H + + F + L+NMY G + + F + +N+ W I G
Sbjct: 221 RSAHGYVIRREFSLDGALGVGLINMYTRCGSMTAAYLCFSSVTSKNVEHWTSAIGGFAAH 280
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A LF EM R G EP+++T +AVL A G V
Sbjct: 281 GHPDMALRLFAEM-------------------RELG--IEPNDVTFVAVLNACSHGGLVD 319
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
K G I+ CL+D + G + A L + + V+W+S+++
Sbjct: 320 EGFKYFNMMRKMGIRP-SIQHYGCLVDLLGRAGFLEEAFNLASSLPKD-PGFVTWSSLLA 377
Query: 268 GFAMHG 273
HG
Sbjct: 378 ACQTHG 383
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 200/358 (55%), Gaps = 37/358 (10%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE-LPERNLVTWNVMITGLVKW 147
QLH+++ + G + + + +LV Y S G + + ++FDE ++V+WNVMI G VK
Sbjct: 96 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G+L AR LF+ MP RNVVSWT ++ Y +M + A EP + +L+VL
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 215
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A G V + +H + +RG +I + N +ID Y KCG + AL++FE +E+K
Sbjct: 216 SACGDLGVVDLGEWVHRFVLRRGL-CQEIPLMNAIIDMYVKCGSVKKALEVFE--GMEQK 272
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++V+WT++I+GFA+HG+G AVE F RM+K + PN +TFL+VL+ CSH GL
Sbjct: 273 SIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYF 332
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC++D+LGRAG L +A + +P + + + LL A HG
Sbjct: 333 KTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFK-ANAAIWGALLAAARTHG 391
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ E+GE+ ++E+E N G+Y+L+ NI A R+ LR M +R PG S
Sbjct: 392 DTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGAS 449
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 40/244 (16%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y+ P++A +++++Q + P D ++ C L +LG +H +
Sbjct: 183 YAQMKQPEEAIEVFRRMQV------EGIEP--DGVALLSVLSACGDLGVVDLGEWVHRFV 234
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
+ G + + A+++MYV G +K + ++F+ + ++++VTW MI G G A
Sbjct: 235 LRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAV 294
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ---- 210
LF M NV P++IT LAVL G +
Sbjct: 295 ELFRRMEKENV---------------------SPNDITFLAVLSVCSHVGLTDLGRWYFK 333
Query: 211 -LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
++ Y K + C+ID + GC+ A L +D+ + N W ++++
Sbjct: 334 TMVSQYKIKPRVEHY-----GCMIDLLGRAGCLMEARGLIQDMPF-KANAAIWGALLAAA 387
Query: 270 AMHG 273
HG
Sbjct: 388 RTHG 391
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 218/393 (55%), Gaps = 43/393 (10%)
Query: 60 SPLRPLFDSFTYSFLIRTCV-----TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV 114
SP P + T ++ C L+ P L LHA K+ F SH+ ++T L Y+
Sbjct: 61 SPAAPAPNDVTLLTVLSACADSPSSPLARP-LALTLHARALKL-FPSHLLLSTCLARFYL 118
Query: 115 SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
+ + +LFD +P R++VT+N M++GL++ G ++ A +F+ MP + VSWT ++DG
Sbjct: 119 ASRLPHLALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDG 178
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ + R + A S EP +T++AV+ A + GA+ +H ++G
Sbjct: 179 FVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLER- 237
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
++RV+N LID YA+CG + A ++F S+ ++ +VSW S+I G A +G+ A+E FE
Sbjct: 238 NVRVANSLIDMYARCGQVKLAAQVFH--SIRKRTVVSWNSMIVGLAANGLCTEAIELFEE 295
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M++ G KP+ VT VL ACSH GL HYGC+VD+LGRAG
Sbjct: 296 MRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAG 355
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
RL++A + +P +VV+ +L G C HG+++M E++ + + E++ G +YVL+
Sbjct: 356 RLDEAMHVVETMPMRPNEVVLGALLAG-CRMHGDLDMAEQLMQHLFELDPGGDANYVLLS 414
Query: 383 NILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A VG++ A ++R +M R K PG S+V
Sbjct: 415 NIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIV 447
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 203/379 (53%), Gaps = 39/379 (10%)
Query: 70 TYSFLIRTCVTLSYP--NLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLF 126
T+ L+ C L +LG LHA K+G + ++ V TALV+MY G ++ S F
Sbjct: 12 TFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCF 71
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------- 179
DEL +N +WN MI G V+ G++ A +F+EMP R V+SWT +++G+ +M
Sbjct: 72 DELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALE 131
Query: 180 ---RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ + EP +TI+ VL A GA+ +H Y K+G ++++ N LID Y
Sbjct: 132 WFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRD-NVKICNSLIDLY 190
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
++CG I A ++FE + + LVSW SII G A +G + A+E+F+ MQK G KPN V+
Sbjct: 191 SRCGAIELARQVFEKMG--ERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVS 248
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F L ACSH GL HYGC+VD+ RAGRLE A + +
Sbjct: 249 FTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNM 308
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + +VVV LL AC G+VE+ ER+ ++ ++ G +YVL+ NI A VGR+ A
Sbjct: 309 PMKPNEVVVGS-LLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRWDGA 367
Query: 395 ERLRRVMDERNALKFPGRS 413
+ R M K PG S
Sbjct: 368 CKQRMTMKALGIQKKPGFS 386
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 220/424 (51%), Gaps = 45/424 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T FNTL+ ++L SP A L+ L+++ L P D T+ F+++ L
Sbjct: 74 TFSFNTLIRIHTLLLSPLPALHLFSTLRRL------SLPP--DFHTFPFVLKASAQLHSL 125
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+L LH+ K G ++ L+ +Y + D+ KLF E P ++V++N +I GL
Sbjct: 126 SLAQSLHSQALKFGLLPDLFSLNTLIGVYSIHHRVNDAHKLFYECPHGDVVSYNALIHGL 185
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
VK ++ AR LF+EMP R+ +SW ++ GY+ + N A +P I ++
Sbjct: 186 VKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALV 245
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+VL A Q G + ++H Y KR D ++ L+D YAKCGC+ +A +FE S
Sbjct: 246 SVLSACAQLGELEQGSIVHDY-IKRNRIRVDSYLATGLVDLYAKCGCVETARDVFE--SC 302
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K + +W +++ GFA+HG G +E F RM G+KP+ VT L VL CSH GL
Sbjct: 303 MEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDGVTLLGVLVGCSHAGLVLEAR 362
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+ DML RAG +E+ ++ +PS DV LLG C
Sbjct: 363 RIFDEMENVYGVKREGKHYGCMADMLARAGLIEEGVEMVKAMPSG-GDVFAWGGLLGGCR 421
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD-ERNALKFPG 411
HGNVE+ ++ ++V+E++ +GG Y +M NI A ++ D ++RR + + A K G
Sbjct: 422 IHGNVEVAKKAAQQVMEIKPEDGGVYSVMANIYAHTEQWDDLVKVRRSLSANKRAKKITG 481
Query: 412 RSLV 415
RSL+
Sbjct: 482 RSLI 485
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 233/435 (53%), Gaps = 43/435 (9%)
Query: 20 SLLHHTLLFNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHS----PLRPLFDSFTYSF 73
+L H L+FN L F ++ ++ KAF + ++ ++ P P D +T++
Sbjct: 73 NLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTS 132
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
+++ C L+ G ++H ++K G +S+++V +LV++Y +G + KLFDE+ R+
Sbjct: 133 VLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRD 192
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
+V+WN +I+G G ++ AR +F+ M +N+VSW+ ++ GY R + A
Sbjct: 193 VVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQH 252
Query: 185 --STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P+++T+++VL A GA+ + IH + + + + N L D YAKCGC+
Sbjct: 253 EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEV-GLFLGNALADMYAKCGCV 311
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +F ++ ++++SW+ II G AM+G A F M + GL+PN ++F+ +L
Sbjct: 312 LEAKGVFHEM--HERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLT 369
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC+H GL HYGC+VD+L RAGRL+QAE + +P + +
Sbjct: 370 ACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQ-PN 428
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V+V LLG C + + E GERV ++LE++ + G V + N+ A +GR DA R
Sbjct: 429 VIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLR 488
Query: 401 MDERNALKFPGRSLV 415
M + ++K PG S +
Sbjct: 489 MRDNKSMKTPGCSWI 503
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 228/420 (54%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N +L Y+ KK+ +L+ ++++ SP +S T ++ C L G
Sbjct: 176 WNIMLSGYNRVKQFKKSKMLFIEMEK---RGVSP-----NSVTLVLMLSACSKLKDLEGG 227
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++ I+ + ++ + L++M+ + G + ++ +FD + R++++W ++TG
Sbjct: 228 KHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANI 287
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNR----------SNGASTEPSEITILAVL 197
G+++ AR F+++P R+ VSWT ++DGY RMNR ++ +P E T++++L
Sbjct: 288 GQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSIL 347
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA+ + + Y +K D V N LID Y KCG + A K+F+++ K
Sbjct: 348 TACAHLGALELGEWVKTYIDKNSIKN-DTFVGNALIDMYFKCGNVGKAKKVFKEM--HHK 404
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ +WT++I G A++G G+ A+ F M + + P+ +T++ VL AC+H G+
Sbjct: 405 DKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFF 464
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRAGRLE+A ++ + +P + + +V LLGAC H
Sbjct: 465 ISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVK-PNSIVWGSLLGACRVHK 523
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NV++ E +++LE+E NG YVL+ NI A R+ + ++R++M ER K PG SL+
Sbjct: 524 NVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLM 583
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 156/359 (43%), Gaps = 88/359 (24%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ YS + P+ +Y + S ++P D FT+ FL++
Sbjct: 73 FIWNTMIKGYSRINHPQNGVSMYLLMLA------SNIKP--DRFTFPFLLKGFTRNMALQ 124
Query: 86 LGTQL--HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G L HAV K GF S+++V A ++M+ + + K+FD +VTWN+M++G
Sbjct: 125 YGKVLLNHAV--KHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSG 182
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ + + ++ LF EM R V P+ +T++ +L A +
Sbjct: 183 YNRVKQFKKSKMLFIEMEKRGV---------------------SPNSVTLVLMLSACSKL 221
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
+ + I+ Y G ++ + N LID +A CG + A +F+++ + ++++SWT
Sbjct: 222 KDLEGGKHIYKYING-GIVERNLILENVLIDMFAACGEMDEAQSVFDNM--KNRDVISWT 278
Query: 264 SIISGFAMHGMGKAAVENFER-------------------------------MQKVGLKP 292
SI++GFA G A + F++ MQ +KP
Sbjct: 279 SIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKP 338
Query: 293 NRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
+ T +S+L AC+H G L G L+DM + G + +A+K+
Sbjct: 339 DEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKV 397
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 45/292 (15%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-SNGAS---------TEPSEITILAVL 197
G++ YAR +F+ +P + W ++ GY+R+N NG S +P T +L
Sbjct: 55 GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
+N A++ +++ + K GF++ ++ V I ++ C + A K+F+ +
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDS-NLFVQKAFIHMFSLCRLVDLARKVFD--MGDAW 171
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----HGGLHY- 311
+V+W ++SG+ K + F M+K G+ PN VT + +L+ACS GG H
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY 231
Query: 312 ---------------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM G +++A+ + + + DV+ ++ + G
Sbjct: 232 KYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNR--DVISWTSIVTGFANIGQ 289
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAG---VGRYVDAERLRRVMDERN 405
+++ + ++ E DYV ++ G + R+++A L R M N
Sbjct: 290 IDLARKYFDQIPER------DYVSWTAMIDGYLRMNRFIEALALFREMQMSN 335
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 221/423 (52%), Gaps = 42/423 (9%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
++ +F L+ +S +P ++ +LY ++ +S F+ +++ C L
Sbjct: 71 NSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV------EFSIPSVLKACGKLLA 124
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+ G Q+H + K +V ++V MY+ G ++ + ++FD +P R++V+WN MI G
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE-----------PSEIT 192
+K GE+E A+ +FE M ++VV+WT ++ Y + NR + + P
Sbjct: 185 YLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQ-NRCPMKALDLFREMLSLGLRPDGPA 243
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
I++VL AI G V + +H Y + + LID Y+KCG I +A +F I
Sbjct: 244 IVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI 303
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
S R+N+ W S+ISG A+HG+ + A++ F M+++ ++PN +TFL +L+ CSHGGL
Sbjct: 304 S-HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEE 362
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC++D+ GRAGRLE A + +P E D++ + +L A
Sbjct: 363 GQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFE-ADLLAWKAILSA 421
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
HG++E+G+ + +E+ + YVL+ NI A GR+ D ++R +M +R K
Sbjct: 422 SMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIA 481
Query: 411 GRS 413
G S
Sbjct: 482 GCS 484
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 238/442 (53%), Gaps = 49/442 (11%)
Query: 7 VTTRIHSHLLTTNSLLHHTLL-FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
V IH + + TL+ +N+++ Y+ + K+AFLL++++++ + P
Sbjct: 135 VCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMRE------WGMEP- 187
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT+ L+ C +LG +H I G + + V ALV+MY G L + +
Sbjct: 188 -DGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAI 246
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------- 177
FD E+N+V+W MI+ + G +E AR +F++MP +NVVSW ++ Y R
Sbjct: 247 FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREAL 306
Query: 178 --MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG-EKRGFNAFDIRVSNCLID 234
N+ + P E T++++L A Q G + + IH Y +G A+ + + N LID
Sbjct: 307 DLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKG--AYGVTLYNSLID 364
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YAKCG + +AL +F + + KNLVSW II A+HG G A++ FE MQ G P+
Sbjct: 365 MYAKCGPVVTALDIF--LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 422
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+T +L+ACSH GL HY C+VD+LGR G L +A ++
Sbjct: 423 ITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIG 482
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + DVVV LLGAC HGNVE+G+++ +++LE+E +GG YVL+ NI R+
Sbjct: 483 RMPMK-PDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWE 541
Query: 393 DAERLRRVMDERNALKFPGRSL 414
D +++R++M +R K GR++
Sbjct: 542 DVKKIRKLMIDRGIKK--GRAI 561
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 169/384 (44%), Gaps = 86/384 (22%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++N+L+ YS +D P A LL++++ S L P + FT F+++ C S
Sbjct: 52 NKFMYNSLIRGYSNSDDPIDAVLLFRRM------ICSGLSP--NEFTLPFVLKACGCKSA 103
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+H + K+G S V+V AL+ +YV G + + KLFD++ ++ LV+WN MI G
Sbjct: 104 YWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGG 163
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
G + A LF +M W EP T + +L Q+
Sbjct: 164 YAHMGNWKEAFLLFRKMR-----EW----------------GMEPDGFTFVNLLSVCSQS 202
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
+ + +H E G DI V N L+D YAKCG + SA +F+ + KN+VSWT
Sbjct: 203 RDLDLGRYVHFCIEITGVK-IDIIVRNALVDMYAKCGNLHSAQAIFD--RTQEKNVVSWT 259
Query: 264 SIISGFAMH-------------------------------GMGKAAVENFERMQKVGLKP 292
S+IS +A H G + A++ F +M+ + P
Sbjct: 260 SMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVP 319
Query: 293 NRVTFLSVLNACSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKIA 331
+ T +S+L ACS G +H Y L+DM + G + A I
Sbjct: 320 DEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIF 379
Query: 332 LGIPSEITDVVVRRILLGACSFHG 355
L +P + ++V +++GA + HG
Sbjct: 380 LEMPGK--NLVSWNVIIGALALHG 401
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 45/292 (15%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVL 197
G+L+YA+ +F+++P N + ++ GY+ + R + P+E T+ VL
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A A L+HG K G + + V N LI Y CG I A KLF+DI+ K
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSL-VFVQNALIAVYVVCGLIHCARKLFDDIT--DK 152
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LH 310
LVSW S+I G+A G K A F +M++ G++P+ TF+++L+ CS +H
Sbjct: 153 TLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVH 212
Query: 311 Y--------------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
+ LVDM + G L A+ A+ ++ +VV ++ A + HG+
Sbjct: 213 FCIEITGVKIDIIVRNALVDMYAKCGNLHSAQ--AIFDRTQEKNVVSWTSMISAYAQHGS 270
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
+E V R++ + G V+ +N + + Y+ + R +D N ++
Sbjct: 271 IE----VARQIFDQMPGKN---VVSWNSM--ISCYLREGQYREALDLFNKMR 313
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/435 (31%), Positives = 234/435 (53%), Gaps = 48/435 (11%)
Query: 18 TNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
N + H T LLFN+++ YSL + + LL+ Q++ + + P D FT++
Sbjct: 60 ANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMK------NRGIWP--DEFTFA 111
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L+++C + +G +H V+ VGF+ + ++++Y S G ++D+ K+FDE+ +R
Sbjct: 112 PLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDR 171
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------- 184
+++ WN+MI G K G++E LF +M R+VVSW ++ G + R A
Sbjct: 172 DVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMW 231
Query: 185 --STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
EP + T++ +LP + GAV + IH Y E I V N L+D Y KCG +
Sbjct: 232 DHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGIL 291
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
+A ++F ++ +KN+VSW ++ISG +G G+ + FE M G++PN TF+ VL+
Sbjct: 292 ETAWRVFNEMP--QKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLS 349
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
C+H GL H+GC+VD+L R G +E+A + +P +
Sbjct: 350 CCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMR-PN 408
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V+ LL A G+V+ E ++++E+E N G+YVL+ N+ A G++ + E++R +
Sbjct: 409 AVLWGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRAL 468
Query: 401 MDERNALKFPGRSLV 415
M E+N K PG+S+V
Sbjct: 469 MKEKNIRKNPGQSMV 483
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 218/413 (52%), Gaps = 43/413 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ ++ +A Y + +Q+ + F+++ ++ CV L L
Sbjct: 160 WNTMVIAHAQCGYWDEALRFYSEFRQLGIQC--------NGFSFAGVLTVCVKLKEVGLT 211
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H I GF S+V +++++++ YV G + D+ KLFDE+ R+++ W M++G KW
Sbjct: 212 RQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKW 271
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G+++ A LF EMP +N VSWT ++ GY R + A P + T + L
Sbjct: 272 GDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCL 331
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A ++++ + IH Y + F I VS LID Y+KCG + K+F D+ +
Sbjct: 332 CACASIASLKHGKQIHAYLLRINFQPNTIVVS-ALIDMYSKCGSLGIGRKVF-DLMGNKL 389
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++V W +IIS A HG G+ A++ + M + G KP+++TF+ +LNACSH GL
Sbjct: 390 DVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFF 449
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CL+D+LGRAG E+ +P + D V LLG C HG
Sbjct: 450 ESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVW-NALLGVCRIHG 508
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
++E+G + +++E+E + YVL+ +I A +GR+ +++R++M+ER K
Sbjct: 509 HIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKK 561
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 173/385 (44%), Gaps = 73/385 (18%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSK 124
DS T + L++ C G ++H + G + +++ L+NMY G ++ K
Sbjct: 57 LDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARK 116
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD++ RNL +WN M++G K G ++ AR LF++MP ++VVSW ++ + + + A
Sbjct: 117 VFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEA 176
Query: 185 STEPSEIT-------------ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
SE +L V + + G R +HG GF + ++ +S+
Sbjct: 177 LRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQ---VHGQILVAGFLS-NVVLSSS 232
Query: 232 LIDTYAKCGCIFSALKLFEDIS-----------------------------VERKNLVSW 262
++D Y KCG + A KLF+++S + KN VSW
Sbjct: 233 VLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSW 292
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGLHYG--------- 312
T++ISG+A +GMG A+E F +M ++P++ TF S L AC S L +G
Sbjct: 293 TALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLR 352
Query: 313 -----------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
L+DM + G L K+ + DVV+ ++ A + HG GE
Sbjct: 353 INFQPNTIVVSALIDMYSKCGSLGIGRKV-FDLMGNKLDVVLWNTIISALAQHG---CGE 408
Query: 362 RVTRKVLEMER-GNGGDYVLMYNIL 385
+ + +M R G D + IL
Sbjct: 409 EAIQMLDDMVRSGAKPDKITFVVIL 433
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 215/406 (52%), Gaps = 44/406 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ YS + K+ L+ +++ + DS T +I C L +
Sbjct: 226 WNSLICGYSQCNRFKEVLDLFNLMREANVTA--------DSVTMVKVILACSYLCEDGVV 277
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ I VY+ +L++MY G + + ++FD + E+N+V+WN M+TG
Sbjct: 278 DSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATA 337
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
G+L A+ LF EMP RNV+SWT ++ G + N+ + A+ +P EIT+ +VL
Sbjct: 338 GDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVL 397
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A G + Q +H Y + + D+ V N LID Y KCG + AL++F D+ ++K
Sbjct: 398 SACSHLGLLDTGQTVHEYMCRHDIKS-DVYVGNALIDMYCKCGVVDKALEVFHDM--KKK 454
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ VSWTS+I G A++G E F +M + GL+P +F+ +L AC+H GL
Sbjct: 455 DSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYF 514
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+L R+G L++A + +P + DVV+ RILL AC H
Sbjct: 515 ESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPV-VPDVVLWRILLSACKLHR 573
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
N+ + E T K+LE++ N G+YVL+ N AG R+ DA R+R +M
Sbjct: 574 NLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLM 619
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 103/367 (28%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+FN L+ S +++P +A ++Y L +Y L D+ T+ +L + C +
Sbjct: 122 LIFNYLIRGLSQSENPNEAIVMYSDL--MYNQG-----ILGDNLTFIYLFKACSRVKDVL 174
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G H + K+GF S++++ +L+ MY G+
Sbjct: 175 HGQVFHVQVLKLGFGSYLFIENSLIRMY---GY--------------------------- 204
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR----------SNGASTEPSEITILA 195
+GEL YA+ +F++M R++VSW ++ GY++ NR A+ +T++
Sbjct: 205 -FGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVK 263
Query: 196 VLPA---IWQNGAVRNC-----------------QLIHGYGEKRGF-----NAFD----- 225
V+ A + ++G V + LI YG +RG FD
Sbjct: 264 VILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYG-RRGLVDLARRVFDRMQEK 322
Query: 226 -IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
I N ++ YA G + +A KLF ++ + +N++SWT +ISG A A++ F+
Sbjct: 323 NIVSWNAMLTGYATAGDLVAAKKLFNEMPI--RNVISWTCMISGCAQANQCSDALKLFQE 380
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL--------HYGC-------------LVDMLGRAGR 323
M +KP+ +T SVL+ACSH GL Y C L+DM + G
Sbjct: 381 MMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGV 440
Query: 324 LEQAEKI 330
+++A ++
Sbjct: 441 VDKALEV 447
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 228/449 (50%), Gaps = 65/449 (14%)
Query: 13 SHLLTTNSLLHHTLLF---------------------NTLLHFYSLADSPKKAFLLYKQL 51
S+L +N+L+H + F N+++ Y + KK L++++
Sbjct: 146 SYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREM 205
Query: 52 QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111
Q I + DS T I LS +G L I + G +Y+ L++
Sbjct: 206 QAINVRA--------DSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLID 257
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY G + + ++F ++ E+N+V+WN MI G K G L A+ LF EMP R+V+SWT +
Sbjct: 258 MYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSM 317
Query: 172 LDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+ GY+ + A +P EIT+ L A G++ + +H Y K
Sbjct: 318 IIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDI 377
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
+ D+ V N LID Y KCG + AL++F D+ + ++ VSWTSIISG A++G ++A+
Sbjct: 378 KS-DVFVGNSLIDMYCKCGVVEKALQVFNDM--KTRDSVSWTSIISGLAVNGFAESALNV 434
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
F++M K G+ P TF+ VL AC+H GL HYGC+VD+L
Sbjct: 435 FDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLC 494
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
R+G L+ A +P + DVV+ RILL AC HGN+ + E V++K+L ++ N G+YV
Sbjct: 495 RSGYLDMAYNFIKKMPI-VPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYV 553
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALK 408
L + AG R+ D ++R++M+ N K
Sbjct: 554 LSSSTYAGSDRWDDVIKIRKLMEVTNLQK 582
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 64/347 (18%)
Query: 26 LLFNTLLHFYSLADSPKKAF-----LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80
L++N ++H S +D P A + YK +Q SH T+ FL ++C
Sbjct: 79 LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQG----SH---------LTFIFLFKSCAR 125
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
+S G + K+GF+S+++V+ AL++MYV G L + K+FD + ER++V+WN +
Sbjct: 126 VSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSI 185
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL-PA 199
I G ++ + LF EM NV + D T M ++ A+ SE + L
Sbjct: 186 ICGYYQFNRFKKVLDLFREMQAINVRA-----DSVTMM-KAISATCFLSEWEMGDYLVKY 239
Query: 200 IWQNGAVRNC----QLIHGYGEKRGFNAFDIRVS-----------NCLIDTYAKCGCIFS 244
I ++G V + LI YG +RG F RV N +I YAK G + +
Sbjct: 240 IDEHGVVVDLYLGNTLIDMYG-RRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVA 298
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A KLF ++ ++++SWTS+I G+++ AV+ F+ M +KP+ +T + L+AC
Sbjct: 299 AKKLFNEMP--SRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSAC 356
Query: 305 SH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
+H G L G L+DM + G +E+A ++
Sbjct: 357 AHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQV 403
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/419 (31%), Positives = 222/419 (52%), Gaps = 45/419 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ ++ + P+ A L+ ++++ + P +S T ++ C G
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMER------ENVMP--NSVTMVGVLSACAKKLDLEFG 246
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + I + G + + + A+++MY G + D+ KLFDE+PER++ +W +M+ G K
Sbjct: 247 RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKM 306
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
G+ + AR +F MP + + +W ++ Y + + A +P E+T+++
Sbjct: 307 GDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVST 366
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A Q GA+ IH Y ++ G + + + L+D YAKCG + AL++F SVE
Sbjct: 367 LSACAQLGAIDLGGWIHVYIKREGI-VLNCHLISSLVDMYAKCGSLEKALEVF--YSVEE 423
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++ W+++I+G MHG GKAA++ F MQ+ +KPN VTF +VL ACSH GL
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVF 483
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C+VD+LGRAG LE+A ++ + S V LLGACS H
Sbjct: 484 FHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMEL-INEMSTTPSASVWGALLGACSLH 542
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
NVE+GE + ++L++E N G VL+ NI A GR+ LR++M + K PG S
Sbjct: 543 MNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCS 601
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 167/398 (41%), Gaps = 85/398 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ Y+ + P ++F+++ L L + FT+ F+I+ L +G
Sbjct: 93 WNTLIRAYASSSDPFQSFVIFLDLLD-------KCEDLPNKFTFPFVIKAASELKASRVG 145
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
T +H + K+ F +Y+ +LV Y + G L + +LF + +++V+WN MI+ +
Sbjct: 146 TAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQG 205
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
E A LF +M NV+ P+ +T++ VL A + +
Sbjct: 206 NCPEDALELFLKMERENVM---------------------PNSVTMVGVLSACAKKLDLE 244
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--------------- 252
+ + Y E++G D+ + N ++D Y KCG + A KLF+++
Sbjct: 245 FGRWVCSYIERKGIKV-DLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGY 303
Query: 253 --------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTF 297
++ K + +W +IS + +G K A+ F +Q + KP+ VT
Sbjct: 304 AKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTL 363
Query: 298 LSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPS 336
+S L+AC+ G + G LVDM + G LE+A ++ +
Sbjct: 364 VSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSV-- 421
Query: 337 EITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
E DV V ++ HG G+ EM+
Sbjct: 422 EERDVYVWSAMIAGLGMHGR---GKAAIDLFFEMQEAK 456
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 41/271 (15%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR------- 177
FD L T + L + L+YAR+LF+++P N+ +W ++ Y
Sbjct: 54 FFDPFSASKLFT----ASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQS 109
Query: 178 ----MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
++ + P++ T V+ A + A R +HG K F D+ + N L+
Sbjct: 110 FVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSF-GMDLYILNSLV 168
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
Y CG + A +LF+ IS K++VSW S+IS FA + A+E F +M++ + PN
Sbjct: 169 RFYGACGDLSMAERLFKGISC--KDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPN 226
Query: 294 RVTFLSVLNACSHG-GLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
VT + VL+AC+ L +G ++DM + G ++ A+K+
Sbjct: 227 SVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFD 286
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERV 363
+P DV I+L + G+ + V
Sbjct: 287 EMPER--DVFSWTIMLDGYAKMGDYDAARLV 315
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 228/415 (54%), Gaps = 55/415 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++NTL+ Y+ + AF LY++++ + P D+ TY FLI+ T++
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMR-----VSGLVEP--DTHTYPFLIKAVTTMAD 136
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
LG +H+V+ + GF S +YV +L+++Y + G + + K+FD++PE++LV WN +I G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ G+ E A +L+ EM N +P TI+++L A +
Sbjct: 197 FAENGKPEEALALYTEM---------------------NSKGIKPDGFTIVSLLSACAKI 235
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA+ + +H Y K G ++ SN L+D YA+CG + A LF+++ KN VSWT
Sbjct: 236 GALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--DKNSVSWT 292
Query: 264 SIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGL------------- 309
S+I G A++G GK A+E F+ M+ GL P +TF+ +L ACSH G+
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
H+GC+VD+L RAG++++A + +P + +VV+ R LLGAC+ HG+ ++
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLA 411
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E ++L++E + GDYVL+ N+ A R+ D +++R+ M K PG SLV
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 215/392 (54%), Gaps = 43/392 (10%)
Query: 61 PLRPLFDSFTYSFLIRTCV-----TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS 115
P P + T ++ C L+ P L LHA+ K+ F ++ + T L Y++
Sbjct: 61 PAAPPPNDVTLLTVLSACAGDSSSALARP-LALSLHALAVKL-FPCNLLLCTCLARFYLA 118
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
+ KLFD +P+R++VT+N MITGL++ G + AR +F+EMP + VSWT ++DG
Sbjct: 119 SRLPHLAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGC 178
Query: 176 TRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+ R + A EP +T++A + A + GA+ +H + + +
Sbjct: 179 VKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLE-HN 237
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+RV+N LID YA+CG + A ++F I ++ +VSW S+I GFA +G AVE+FE M
Sbjct: 238 VRVANSLIDMYARCGQVDFARQVFGRI--RKRTVVSWNSMIVGFAANGQYADAVEHFEAM 295
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGR 323
++ G KP+ VTF VL ACSH GL HYGC+VD+LGRAGR
Sbjct: 296 RREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGR 355
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
L +A ++ +P +VV+ +L G C HG+V++ E++ + +LE + G +YVL+ N
Sbjct: 356 LGEAMRVVESMPMRPNEVVLGALLAG-CRMHGDVDLAEQLMQHLLEQDPGGDSNYVLLSN 414
Query: 384 ILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
I A VG++ A ++R +M R K PG+S V
Sbjct: 415 IYAAVGKWGGAGKVRSLMKSRGVKKRPGQSTV 446
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 48/225 (21%)
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNG------------ASTEPSEITILAVLPAI 200
A S +P R+VVSWT + R G A+ P+++T+L VL A
Sbjct: 19 ATSKPRRLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSAC 78
Query: 201 WQNG---------------AVR--NCQLIHGYGEKRGFNA----------FD------IR 227
+ AV+ C L+ R + A FD +
Sbjct: 79 AGDSSSALARPLALSLHALAVKLFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVV 138
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
N +I + G + +A ++F+++ K VSWT++I G +G A++ F M +
Sbjct: 139 TYNTMITGLMRNGLVAAAREVFDEMPAPDK--VSWTALIDGCVKNGRHDEAIDCFHSMLR 196
Query: 288 VGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRAGRLEQAEKIA 331
G++P+ VT ++ ++AC+ G L G V RLE ++A
Sbjct: 197 DGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVA 241
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 224/417 (53%), Gaps = 51/417 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ + A Y++L+++ ++ ++++ L+ CV + L
Sbjct: 151 WNTMVIAYAKSGFCNDALRFYRELRRLGIG--------YNEYSFAGLLNICVKVKELELS 202
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q H + GF S++ +++++++ Y + D+ +LFDE+ R+++ W M++G +W
Sbjct: 203 KQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQW 262
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++E AR LF+ MP +N V+WT ++ GY R + + A + P + T + L
Sbjct: 263 GDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCL 322
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A ++ + + IHGY + I VS+ LID Y+KCGC+ +L D+ ++
Sbjct: 323 CASASIASLNHGKQIHGYLIRTNIRPNTIVVSS-LIDMYSKCGCL-EVGRLVFDLMGDKW 380
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++V W +IIS A HG G+ A++ F+ M ++G+KP+R+T + +LNACSH GL
Sbjct: 381 DVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLY 440
Query: 310 --------------HYGCLVDMLGRAGRLE----QAEKIALGIPSEITDVVVRRILLGAC 351
HY CL+D+LGRAG + Q EK+ EI + LLG C
Sbjct: 441 ESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNA-----LLGVC 495
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
HGN+E G V K++E++ + YVL+ +I A VGR+ E +R++M+ER+ K
Sbjct: 496 RMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRK 552
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 170/370 (45%), Gaps = 67/370 (18%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKLF 126
S T ++L++ C LG +H + G + + ++ L+NMY G + K+F
Sbjct: 50 SKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVF 109
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+ RNL +WN M++G K G+++ AR LF++MP ++VVSW ++ Y + N A
Sbjct: 110 DEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALR 169
Query: 187 EPSEITILAVLPAIWQNGAVRN----------CQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
E+ L + + + N + HG GF + ++ +S+ ++D Y
Sbjct: 170 FYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLS-NLVISSSVLDAY 228
Query: 237 AKCGCIFSALKLFE---------------------DISVER--------KNLVSWTSIIS 267
AKC + A +LF+ D+ R KN V+WTS+I+
Sbjct: 229 AKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIA 288
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS------HGGLHYG--------- 312
G+A H +G A+E F +M + ++P++ TF S L A + HG +G
Sbjct: 289 GYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRP 348
Query: 313 ------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN----VEMGER 362
L+DM + G LE ++ + + DVV+ ++ + + HG ++M +
Sbjct: 349 NTIVVSSLIDMYSKCGCLEVG-RLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDD 407
Query: 363 VTRKVLEMER 372
+ R ++ +R
Sbjct: 408 MVRLGMKPDR 417
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 219/420 (52%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ Y + P++A L+ +L + +RP D T + C + LG
Sbjct: 190 WNTLIGGYVRSGLPREALELFWRLVE----DGKAVRP--DEVTMIGAVSGCAQMGDLELG 243
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH + G + V + A+++MYV G L+ + +F+ + + +V+W MI G +
Sbjct: 244 KRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARL 303
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G +E AR LF+EMP R+V W ++ GY + + A +P+EIT++ +L
Sbjct: 304 GMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLL 363
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ +H Y ++ + + L+D YAKCG I A+ +F++I K
Sbjct: 364 SACSQLGALEMGMWVHHYIDRHQLY-LSVALGTSLVDMYAKCGNIKKAICIFKEIP--DK 420
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N ++WT++I G A HG A+E F+RM +GL+P+ +TF+ VL+AC H GL
Sbjct: 421 NALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFF 480
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C++D+LGRAG L++AE++ +P + D VV L AC HG
Sbjct: 481 SLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMD-PDAVVWGALFFACRMHG 539
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ +GE+ K++E++ + G YVL+ N+ A A+++R +M K PG S +
Sbjct: 540 NITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCI 599
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 144/330 (43%), Gaps = 76/330 (23%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
S RP D T+ FL++ C L Y G + + K+GF + V+V A V+ + G +
Sbjct: 115 SSARP--DHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSM 172
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ +LFDE P R++V+WN +I G V+ G A LF W + D
Sbjct: 173 VLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELF----------WRLVED------ 216
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
G + P E+T++ + Q G + + +H + + +G +R+ N ++D Y KC
Sbjct: 217 ---GKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRC-TVRLMNAVMDMYVKC 272
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM------------------------- 274
G + A +FE I + K +VSWT++I G A GM
Sbjct: 273 GSLELAKSVFERI--DNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330
Query: 275 ------GKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------- 312
GK A+ F MQ+ + PN +T +++L+ACS G L G
Sbjct: 331 YVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLS 390
Query: 313 -----CLVDMLGRAGRLEQAEKIALGIPSE 337
LVDM + G +++A I IP +
Sbjct: 391 VALGTSLVDMYAKCGNIKKAICIFKEIPDK 420
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 218/413 (52%), Gaps = 44/413 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ Y + KK L++++Q I + DS T I LS +G
Sbjct: 141 WNSIICGYYQFNRFKKVLDLFREMQAINVRA--------DSVTMMKAISATCFLSEWEMG 192
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
L I + G +Y+ L++MY G + + ++F ++ E+N+V+WN MI G K
Sbjct: 193 DYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKV 252
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G L A+ LF EMP R+V+SWT ++ GY+ + A +P EIT+ L
Sbjct: 253 GNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATAL 312
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A G++ + +H Y K + D+ V N LID Y KCG + AL++F D+ + +
Sbjct: 313 SACAHLGSLDAGEAVHDYIRKHDIKS-DVFVGNSLIDMYCKCGVVEKALQVFNDM--KTR 369
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ VSWTSIISG A++G ++A+ F++M K G+ P TF+ VL AC+H GL
Sbjct: 370 DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHF 429
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+L R+G L+ A +P + DVV+ RILL AC HG
Sbjct: 430 KSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPI-VPDVVIWRILLSACKLHG 488
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
N+ + E V++K+L ++ N G+YVL + AG R+ D ++R++M+ N K
Sbjct: 489 NLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQK 541
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 165/347 (47%), Gaps = 64/347 (18%)
Query: 26 LLFNTLLHFYSLADSPKKAF-----LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80
L++N ++H S +D P A + YK +Q SH T+ FL ++C
Sbjct: 38 LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQG----SH---------LTFIFLFKSCAR 84
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
+S G + K+GF+S +V+ AL++MYV G L + K+FD + ER++V+WN +
Sbjct: 85 VSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSI 144
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL-PA 199
I G ++ + LF EM NV + D T M ++ A+ SE + L
Sbjct: 145 ICGYYQFNRFKKVLDLFREMQAINVRA-----DSVTMM-KAISATCFLSEWEMGDYLVKY 198
Query: 200 IWQNGAVRNC----QLIHGYGEKRGFNAFDIRVS-----------NCLIDTYAKCGCIFS 244
I ++G V + LI YG +RG F RV N +I YAK G + +
Sbjct: 199 IDEHGVVVDLYLGNTLIDMYG-RRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVA 257
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A KLF ++ ++++SWTS+I G+++ AV+ F+ M +KP+ +T + L+AC
Sbjct: 258 AKKLFNEMP--SRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSAC 315
Query: 305 SH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
+H G L G L+DM + G +E+A ++
Sbjct: 316 AHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQV 362
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 224/418 (53%), Gaps = 56/418 (13%)
Query: 25 TLLFNTLLH-FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ L+NT++ F + A +K++Q +H P D+FT+SF+++ L +
Sbjct: 75 SFLWNTMIRGFGNSTTHSHNAIHFFKRMQL----AHRP-----DNFTFSFILKIIARLRF 125
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
NLG QLH + K GF++H YV +L++MY L ++ + +LF+E+ + NLV+WN +I
Sbjct: 126 VNLGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDC 185
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V G+ A LF +M + NG +P T++ L A
Sbjct: 186 HVYCGKYNEAIDLFTKMV----------------QQQHNGMELQPDHATLVVTLSACGAI 229
Query: 204 GAVRNCQLIHGYGEKRGFNAF--DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
G++ + +H + + G N+F I V N L+D YAKCG + A + F ++ +RKN+VS
Sbjct: 230 GSLDFGRKVHSF-VRDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNM--KRKNVVS 286
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGL----------- 309
W +I GFA HG G+ A+ F RM + +P+ +TFL VL ACSHGGL
Sbjct: 287 WNVMILGFASHGNGEEALALFTRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIM 346
Query: 310 -----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
HYGC+VD+LGRAG +A ++ +P E + ++ R LL AC +GNVE
Sbjct: 347 NRDYNIKPTIKHYGCMVDLLGRAGLFVEAYELIKSMPVE-CNAIIWRTLLAACRNYGNVE 405
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPGRSLV 415
+GE+V + ++E+E + DYVL+ N+ A G++ + + RR M ER K PG S +
Sbjct: 406 LGEKVRKHLMELEPDHSSDYVLLANMYASTGQWNEMSKERRSMQERRVRKPEPGNSFI 463
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 148/455 (32%), Positives = 227/455 (49%), Gaps = 80/455 (17%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIR-------- 76
+ L N LLH Y+ P A L+ ++ HSH DS Y+ LIR
Sbjct: 49 SFLLNALLHLYASCPLPSHARKLFDRI----PHSHK------DSVDYTALIRCSHPLDAL 98
Query: 77 -----------------------TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113
C L NL Q+H + K GF H V +++ Y
Sbjct: 99 RFYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGY 158
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
V G + ++ ++F+E+ E ++V+W V++ G+VK +E + +F+EMP RN V+WT ++
Sbjct: 159 VKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIK 218
Query: 174 GYT-------------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
GY M G + IT+ +VL A Q+G V + +H Y K
Sbjct: 219 GYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAV 278
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ V L+D YAKCG I +AL +F + R+N+V+W +++ G AMHGMGK VE
Sbjct: 279 GWDLGVMVGTSLVDMYAKCGRISAALMVFRHMP--RRNVVAWNAMLCGLAMHGMGKVVVE 336
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
F M + +KP+ VTF+++L++CSH GL HY C+VD+L
Sbjct: 337 MFACMVE-EVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLL 395
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRAGRLE+AE + +P +VV+ LLGAC HG + +GE++ R++++M+ N +
Sbjct: 396 GRAGRLEEAEDLVKKLPIPPNEVVLGS-LLGACYAHGKLRLGEKIMRELVQMDPLNTEYH 454
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+L+ N+ A G+ A LR+V+ R K PG S
Sbjct: 455 ILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMS 489
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 206/381 (54%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ T ++ C +L + + I + + VY+ L++MY G + + +F
Sbjct: 177 DAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVF 236
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D++ RNLV+WN MI G K G L AR LF+ M R+V+SWT ++ Y++ + A
Sbjct: 237 DQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALR 296
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P EIT+ +VL A G++ + H Y +K A DI V N LID Y
Sbjct: 297 LFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKA-DIYVGNALIDMY 355
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCG + AL++F+++ +K+ VSWTSIISG A++G +A++ F RM + ++P+
Sbjct: 356 CKCGVVEKALEVFKEM--RKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGA 413
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ +L AC+H GL HYGC+VD+L R+G L++A + +
Sbjct: 414 FVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEM 473
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P DVV+ RILL A HGN+ + E T+K+LE++ N G+YVL N AG R+ DA
Sbjct: 474 PV-TPDVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDA 532
Query: 395 ERLRRVMDERNALKFPGRSLV 415
++R +M++ N K G S +
Sbjct: 533 VKMRELMEKSNVQKPSGSSCI 553
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 155/297 (52%), Gaps = 31/297 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+N ++ +S++D P +A +Y + Y L ++ TY FL + C + +
Sbjct: 44 FWNIMIRGWSVSDQPNEAIRMYNLM---YRQG-----LLGNNLTYLFLFKACARVPDVSC 95
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G+ +HA + K+GF+SH+YV+ AL+NMY S G L + K+FDE+PER+LV+WN ++ G +
Sbjct: 96 GSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQ 155
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL-AVLPAIWQNGA 205
+FE M G+ M + A T E + A++ I +N
Sbjct: 156 CKRFREVLGVFEAMRV------AGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNV 209
Query: 206 VRNC----QLIHGYGEK------RG-FNAFDIR--VS-NCLIDTYAKCGCIFSALKLFED 251
+ LI YG + RG F+ R VS N +I Y K G + +A +LF+
Sbjct: 210 EIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDA 269
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
+S +++++SWT++I+ ++ G A+ F+ M + +KP+ +T SVL+AC+H G
Sbjct: 270 MS--QRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTG 324
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 24/184 (13%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
LF ++ L WN+MI G W + E + N++ G+L
Sbjct: 33 LFQQIHRPTLPFWNIMIRG---WSVSDQPN---EAIRMYNLMYRQGLLG----------- 75
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
+ +T L + A + V IH K GF + + VSN LI+ Y CG +
Sbjct: 76 ----NNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESH-LYVSNALINMYGSCGHLGL 130
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A K+F+++ ++LVSW S++ G+ + + FE M+ G+K + VT + V+ AC
Sbjct: 131 AQKVFDEMP--ERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLAC 188
Query: 305 SHGG 308
+ G
Sbjct: 189 TSLG 192
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 152/458 (33%), Positives = 229/458 (50%), Gaps = 88/458 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L N LLH Y P A L+ ++ Q SH DS Y+ LIR C
Sbjct: 58 FLRNALLHLYGSCSLPSHARKLFDEIPQ----SHK------DSVDYTALIRHCPPFESLK 107
Query: 86 L---------------------------------GTQLHAVISKVGFQSHVYVNTALVNM 112
L G+Q+H + K GF V AL+N+
Sbjct: 108 LFIQMRQFDLPLDGVVMVCALNACARLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNV 167
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
YV G + ++ K+F+ + R++V+W+ + GLVKW +E R LF+EMP RN V+WT ++
Sbjct: 168 YVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMI 227
Query: 173 DGYTRMNRSNGASTEP---------------SEITILAVLPAIWQNGAVRNCQLIHGYGE 217
GY NG + E S +T+ +VL A Q+G V + +H Y
Sbjct: 228 VGYV----GNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAV 283
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K F + V L+D YAKCG I +AL +F S+ ++N+V+W +++ G AMHGMGK
Sbjct: 284 KEMGLDFGVMVGTSLVDMYAKCGRINAALSVFR--SMLKRNVVAWNAMLGGLAMHGMGKI 341
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
AV+ F M + +KP+ VTF+++L+ACSH GL HY C+V
Sbjct: 342 AVDMFPSMVE-EVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMV 400
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
+LGRAGRLE+AE + + +VV+ L+G+C HG +++GE++ R +LEM+ N
Sbjct: 401 GLLGRAGRLEEAEIMVKNMRIPPNEVVLGS-LIGSCYAHGRLQLGEKIMRDLLEMDPLNT 459
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
++++ N+ A G+ A LR+V+ +R K PG S
Sbjct: 460 EYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMS 497
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 146/473 (30%), Positives = 245/473 (51%), Gaps = 60/473 (12%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLH----HTLL-------FNTLLHFYSLADS-PKKAFLLY 48
S S N + H+HL+TT +LH + LL F +L + + L D PK +Y
Sbjct: 24 SCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIY 83
Query: 49 KQLQQ----IYTHSHSPLRPLF----------DSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
+ + I T SH+ +R + +T+ F+ + C G Q+
Sbjct: 84 NTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHA 143
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K+G +S+++V A++ MY + G + ++ ++FD +++L +WN+MI G V GE+ A+
Sbjct: 144 IKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAK 203
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNG 204
+F+EM R+VVSWT I+ GY ++ A P+E T+ + L A
Sbjct: 204 EMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLV 263
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ + IH Y +K + R+ L+D YAKCG I A K+F D + + W +
Sbjct: 264 ALDQGRWIHVYIDKSEIK-MNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNA 322
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I G+AMHG K A++ FE+M+ + PN+VTF+++LNACSHG L
Sbjct: 323 MIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSY 382
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+VD+LGR+G L++AE+ +P D + LLGAC H ++E G+R
Sbjct: 383 GIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMA-PDATIWGALLGACRIHKDIERGQR 441
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + + E++ + G +VL+ N+ + G++ +A+ +R+ ++ K PG S +
Sbjct: 442 IGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 494
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 144/465 (30%), Positives = 238/465 (51%), Gaps = 67/465 (14%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHF-YSLADSPKKAFLLYKQLQQI-----------YTH 57
+IH+H++ T L HHT+ + +L F S + A+LL+ + ++
Sbjct: 43 KIHAHIIKTG-LAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSR 101
Query: 58 SHSP---LRPLFDSFTYSFLIRTCVTLSYPNL------------GTQLHAVISKVGFQSH 102
S +P + D S L + L+YP++ G QLH + K+G +
Sbjct: 102 SSTPHLAISLFVDMLCSSVLPQR---LTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKD 158
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
++ ++ MY + G L ++ ++FDEL + ++V N MI GL K GE++ +R LF+ MP
Sbjct: 159 QFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPT 218
Query: 163 RNVVSWTGILDGYTRMNR----------SNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212
R V+W ++ GY R R G EPSE T++++L A GA+++ + +
Sbjct: 219 RTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWV 278
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y KRG ++ V +ID Y KCG I A+++FE + + L W SII G A++
Sbjct: 279 HDY-VKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFE--ASPTRGLSCWNSIIIGLALN 335
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G + A+E F +++ LKP+ V+F+ VL AC + G H
Sbjct: 336 GYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKH 395
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
Y C+V++LG+A LE+AE++ G+P + D ++ LL +C HGNVE+ +R ++V E+
Sbjct: 396 YTCMVEVLGQAALLEEAEQLIKGMPLK-ADFIIWGSLLSSCRKHGNVEIAKRAAQRVCEL 454
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ Y+LM N+ A ++ +A R +M ER A K PG S +
Sbjct: 455 NPSDASGYLLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSI 499
>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
Length = 488
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 134/362 (37%), Positives = 199/362 (54%), Gaps = 39/362 (10%)
Query: 89 QLHAVISKVGFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+HA++ K G SHV T+L+ Y LG + D+ K+FD + +R +VTWNV++ L+
Sbjct: 82 QIHALLVKSGGSRAVSHVQAFTSLIRAYARLGRVCDARKVFDGMADRTVVTWNVLLDALI 141
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTR-----------MNRSNGASTEPSEITIL 194
+ G+L+ A +F +MP RN VSW I+ G+ R + + P E T++
Sbjct: 142 RDGDLDAAWEVFVKMPQRNAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAPDEATMV 201
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ A+ G + + HGY +R F+ D + L+ Y +CG + +A F +SV
Sbjct: 202 GFVSAVRDIGLLAIGKSAHGYVLRREFS-LDGPLGVALVSMYTRCGSMGAAHSCF--LSV 258
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
KN+ WTS+I+GFA HG + A+ F M++VG++PN VTF++VL+ACSHGGL
Sbjct: 259 TTKNVEHWTSLIAGFAAHGQPENALRLFVEMRQVGIEPNGVTFVAVLSACSHGGLVDEGF 318
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGCLVD+LGRAG L++A +A +P E V+ LL AC
Sbjct: 319 KYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLP-EDPGFVIWSSLLAACRS 377
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGNVEM E K+ E + +G YVL+ N A ++ D++R RR M+E K PG S
Sbjct: 378 HGNVEMAELTASKLAEAKPSHGSSYVLLSNTYARAEQWEDSKRTRRRMEEHRVAKKPGLS 437
Query: 414 LV 415
+
Sbjct: 438 WI 439
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 43/198 (21%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G H + + F + ALV+MY G + + F + +N+ W +I G
Sbjct: 215 IGKSAHGYVLRREFSLDGPLGVALVSMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFA 274
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G+ E A LF EM R V GI EP+ +T +AVL A G
Sbjct: 275 AHGQPENALRLFVEM--RQV----GI---------------EPNGVTFVAVLSACSHGGL 313
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVS----------NCLIDTYAKCGCIFSALKLFEDISVE 255
V GF FD+ S CL+D + G + A L ++ E
Sbjct: 314 V-----------DEGFKYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLP-E 361
Query: 256 RKNLVSWTSIISGFAMHG 273
V W+S+++ HG
Sbjct: 362 DPGFVIWSSLLAACRSHG 379
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 217/391 (55%), Gaps = 41/391 (10%)
Query: 61 PLRPLFDSFTYSFLIRTCV-TLSYP---NLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 116
P P+ + T ++ C + S P L +HA + K+ F SH+ ++T LV Y +
Sbjct: 60 PAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFAS 118
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
+ +LFD +P R+ VT+N +I+GL++ G + A +F+ MP + VSWT ++DG
Sbjct: 119 RLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCV 178
Query: 177 RMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
+ R + A EP +T++AV+ A + GA+ +H ++G ++
Sbjct: 179 KNGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-NV 237
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
R++N LID YA+CG + A ++F + ++ +VSW S+I GFA +G AVE+FE M+
Sbjct: 238 RIANSLIDMYARCGQVELARQVFS--GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMR 295
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
+ G KP+ VTF VL ACSHGGL HYGC+VD+LGR+GRL
Sbjct: 296 REGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRL 355
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
E+A ++ +P +VV+ +L G C HG+V M E++ + +LE++ G +YVL+ NI
Sbjct: 356 EEAMRVVTTMPMRPNEVVLGALLAG-CRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNI 414
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A VG++ A ++R +M R K PG S V
Sbjct: 415 YAAVGKWDGAGKVRSLMKARGLRKRPGYSAV 445
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 201/374 (53%), Gaps = 34/374 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
LI C + G Q H +I + GF + ++ +++ Y + G + + F+ + +
Sbjct: 322 LISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDH 381
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------G 183
+ +WN +I+G V+ G +E AR LF+EMP R+V SW+ ++ GY++ + +
Sbjct: 382 VSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVA 441
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+P+EIT+++V AI G + + H Y D ++ LID YAKCG I
Sbjct: 442 GGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLND-NLNAALIDMYAKCGSIT 500
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
AL+LF +I ++ W +II G AMHG +++ F ++Q+V +KPN +TF+ VL+A
Sbjct: 501 IALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSA 560
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C H GL HYGC++D+LGRAGRL++A ++ +P + DV
Sbjct: 561 CCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMK-ADV 619
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ LL AC HGNVE+GER + +++ +G VL+ NI A GR+ DA +RR M
Sbjct: 620 VIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAM 679
Query: 402 DERNALKFPGRSLV 415
+ K PG S V
Sbjct: 680 QSQRMKKSPGCSGV 693
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 155/331 (46%), Gaps = 63/331 (19%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
LHA+ K+G ++ V T LV+MY L ++ LFDE+PERN+VTWNVM+ G K G
Sbjct: 206 LHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGL 265
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
++ AR LFE +P ++VVSW I+DGY ++ R A P+E+ I+ ++ A
Sbjct: 266 VDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISA 325
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFD------------------------------IRVS 229
+ AV Q HG + GF+ +D +
Sbjct: 326 CGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSW 385
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LI + + G I A +LF+++ +++ SW+S+ISG++ + A++ F M G
Sbjct: 386 NALISGFVRNGMIEQARQLFDEM--PERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGG 443
Query: 290 LKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAE 328
++PN +T +SV +A + G L G L+DM + G + A
Sbjct: 444 VQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIAL 503
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEM 359
++ I ++ V ++ + HG+ +
Sbjct: 504 QLFYEIQDRVSSVSPWNAIICGLAMHGHANV 534
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 142/303 (46%), Gaps = 54/303 (17%)
Query: 53 QIYTHSHSPLRPLFD----------SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
Q+ H LR F+ T +++C +L + G Q+H+++ K G S+
Sbjct: 27 QLPPHPIDHLRAFFNGNKDTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSN 86
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
++V +L++ YV + ++ LFD + V+ N+M+ G VK G L+ AR LFE+MP
Sbjct: 87 IFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPI 146
Query: 163 RNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212
+ VS+T ++ G + N A P+E+T+ +V+ A G + NC+++
Sbjct: 147 KGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRML 206
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H K G A +I +N L+ Y C + +A LF++I +N+V+W +++G++
Sbjct: 207 HALSFKLGLEALNIVATN-LVHMYCVCSSLGNARVLFDEI--PERNVVTWNVMLNGYSKS 263
Query: 273 GMGKAAVENFER-------------------------------MQKVGLKPNRVTFLSVL 301
G+ A + FER M + G+ PN V + ++
Sbjct: 264 GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLI 323
Query: 302 NAC 304
+AC
Sbjct: 324 SAC 326
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N ++ Y K G + +A LFE + + K VS+T+++ G A + A+ F+ M+ G
Sbjct: 122 NIMLAGYVKSGSLDNARHLFEKMPI--KGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAG 179
Query: 290 LKPNRVTFLSVLNACSHGGLHYGC 313
+ PN VT SV++A SH G C
Sbjct: 180 VIPNEVTLASVISAYSHVGGILNC 203
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 135/412 (32%), Positives = 222/412 (53%), Gaps = 55/412 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++FN++ YS + +P + F L+ ++ + L P D++T+ L++ C
Sbjct: 97 VIFNSIARGYSRSTNPLEVFNLFVEILE------DDLLP--DNYTFPSLLKACAVAKALE 148
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH + K+G +VYV L+NMY + + +FD + E +V +N MITG
Sbjct: 149 EGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYA 208
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ A SLF EM G + +P+EIT+L+VL + G+
Sbjct: 209 RRNRPNEALSLFREM---------------------QGKNLKPNEITLLSVLSSCALLGS 247
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IH Y +K GF + ++V+ LID +AKCG + A+ +FE++ K+ +W+++
Sbjct: 248 LDLGKWIHEYAKKHGFCKY-VKVNTALIDMFAKCGSLDDAVSIFENMRY--KDTQAWSAM 304
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I +A HG + ++ FERM+ ++P+ +TFL +LNACSH GL
Sbjct: 305 IVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFG 364
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HYG +VD+LGRAG LE A + +P T ++ RILL ACS H N+E+ E+V
Sbjct: 365 IVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTP-MLWRILLAACSSHNNLELAEKV 423
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++LE++ +GGDYV++ N+ A ++ + LR+VM +R A+K PG S +
Sbjct: 424 SERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSI 475
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 48/219 (21%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI-----------------T 192
+ YAR LF+ M ++V + I GY+R ST P E+ T
Sbjct: 81 MSYARHLFDAMSEPDIVIFNSIARGYSR-------STNPLEVFNLFVEILEDDLLPDNYT 133
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
++L A A+ + +H K G + ++ V LI+ Y +C + +A +F+ I
Sbjct: 134 FPSLLKACAVAKALEEGRQLHCLSMKLGVDD-NVYVCPTLINMYTECEDVDAARCVFDRI 192
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS------- 305
+V + ++I+G+A A+ F MQ LKPN +T LSVL++C+
Sbjct: 193 V--EPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDL 250
Query: 306 ----------HGGLHY----GCLVDMLGRAGRLEQAEKI 330
HG Y L+DM + G L+ A I
Sbjct: 251 GKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSI 289
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 37/388 (9%)
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
P P + + Y+ LI+ C L G ++HAV+ K G +++++ T+LV+MY
Sbjct: 106 PSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPA 165
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ ++FDE+P R++V+WN M++G G+LE AR +F++M R+V+SW ++ GY + +
Sbjct: 166 SAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGK 225
Query: 181 SNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
+ A P ++T+++VL A GA+ + I + RG ++ +
Sbjct: 226 YSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRG-RGLNLYLG 284
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LID YAKCG + A ++F+ + ++++SW+++I G HG A + +M + G
Sbjct: 285 NALIDMYAKCGTMEEARRIFD--GMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECG 342
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
+KPN VTF+ +L+ACSH GL HYGC++D+L RAGRL++A
Sbjct: 343 VKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEA 402
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
E + +P E +V+V LLG C H + GERV + +LE++ G YV + A
Sbjct: 403 EDLINSMPIE-PNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKAS 461
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
VGR DA M + +K PG S +
Sbjct: 462 VGRVDDAANCWLRMQHKGIIKDPGCSKI 489
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 49/284 (17%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM------PCRNVVSWTGILDGYTRM 178
+F +LP N+ +WN +I + G E+A + F P N +T ++ +
Sbjct: 67 IFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGL 126
Query: 179 NR-SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-------FNAFDIR--V 228
++G V+ + N L+ Y + R F+ +R V
Sbjct: 127 EAIADGLKVHA------VVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVV 180
Query: 229 S-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
S N ++ Y CG + SA ++F+ + +ER +++SW ++I G+ +G A+E F MQK
Sbjct: 181 SWNTMVSGYCLCGDLESARRVFDQM-LER-DVISWNAMIGGYVQNGKYSDAIEVFHEMQK 238
Query: 288 V-GLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLE 325
V G+ P+ VT +SVL+AC+H G L +G L+DM + G +E
Sbjct: 239 VGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTME 298
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+A +I G+ DV+ ++ HG+ + K+LE
Sbjct: 299 EARRIFDGMRER--DVISWSTMICGSGTHGDADEAFGYYSKMLE 340
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 213/389 (54%), Gaps = 41/389 (10%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDS 122
P + F Y ++++ LS +H + K GF +V V TAL++ Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----- 177
+LFDE+ ERN+V+W M++G + G++ A +LFE+MP R+V SW IL T+
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 178 ------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
N S P+E+T++ VL A Q G ++ + IH + +R ++ D+ VSN
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNS 300
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-- 289
L+D Y KCG + A +F+ S +K+L +W S+I+ FA+HG + A+ FE M K+
Sbjct: 301 LVDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 290 -LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+KP+ +TF+ +LNAC+HGGL HYGCL+D+LGRAGR ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A ++ + + D + LL AC HG++++ E + ++ + NGG +M N+
Sbjct: 419 ALEVMSTMKMK-ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYG 477
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
+G + +A R R+++ +NA K PG S +
Sbjct: 478 EMGNWEEARRARKMIKHQNAYKPPGWSRI 506
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 228/415 (54%), Gaps = 55/415 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++NTL+ Y+ + AF LY++++ + P D+ TY FLI+ T++
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMR-----VSGLVEP--DTHTYPFLIKAVTTMAD 136
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
LG +H+V+ + GF S +YV +L+++Y + G + + K+FD++PE++LV WN +I G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ G+ E A +L+ EM N +P TI+++L A +
Sbjct: 197 FAENGKPEEALALYTEM---------------------NSKGIKPDGFTIVSLLSACAKI 235
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA+ + +H Y K G ++ SN L+D YA+CG + A LF+++ KN VSWT
Sbjct: 236 GALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--DKNSVSWT 292
Query: 264 SIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGL------------- 309
S+I G A++G GK A+E F+ M+ GL P +TF+ +L ACSH G+
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
H+GC+VD+L RAG++++A + +P + +VV+ R LLGAC+ HG+ ++
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLA 411
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E ++L++E + GDYVL+ N+ A R+ D +++R+ M K PG SLV
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 237/457 (51%), Gaps = 50/457 (10%)
Query: 7 VTTRIHSHLLTTNSLLHH-TLLFNTLLHFYSLADS-PKKAFLLYKQLQQIYTHSHSPLRP 64
+TT + H + TN LL + +F + + + + D P+ LY + ++ S +
Sbjct: 25 ITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSAD 84
Query: 65 LFDSF--------------TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110
F F +++F + C + G Q+ K+G +++++V AL+
Sbjct: 85 SFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALI 144
Query: 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
MYV+L F+ D+ K+FD P R++ +WN+M++G + G+++ AR LF+EMP ++VVSWT
Sbjct: 145 GMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTT 204
Query: 171 ILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ G ++ A P+E T+ + L A A+ + +H Y +K
Sbjct: 205 MISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNN 264
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ R+ LID YAKCG + A KLF ++ + W ++I GFA+HG K A+E
Sbjct: 265 IQ-MNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIE 323
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
FE+M+ + PN+VTF+++LNACSHG HYGCLVD+L
Sbjct: 324 VFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLL 383
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRAGRL++AE+I + DV + LL AC H + EMGERV + V E++ + G +
Sbjct: 384 GRAGRLKEAEEIISSM-HLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCH 442
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VL+ NI + G + +A LR + E K PG S +
Sbjct: 443 VLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSI 479
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 230/415 (55%), Gaps = 55/415 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++NTL+ Y+ + A LY++++ + + P D+ TY FL++ ++
Sbjct: 84 NVFIWNTLIRGYAEIGNSVSAVSLYREMR-----ASGFVEP--DTHTYPFLLKAVGKMAD 136
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
LG +H+V+ + GF S +YV +L+++Y + G + + K+FD++PE++LV WN +I G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ G+ E A +L+ EM + + +P TI+++L A +
Sbjct: 197 FAENGKPEEALALYTEMDLKGI---------------------KPDGFTIVSLLSACAKI 235
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA+ + H Y K G ++ SN L+D YA+CG + A LF+++ KN VSWT
Sbjct: 236 GALTLGKRFHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--DKNSVSWT 292
Query: 264 SIISGFAMHGMGKAAVENFERMQ-KVGLKPNRVTFLSVLNACSHGGL------------- 309
S+I G A++G+GK A+E F+ M+ K GL P +TF+ +L ACSH G+
Sbjct: 293 SLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSE 352
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
H+GC+VD+L RAG++++A + L +P + +VV+ R LLGAC+ HG+ ++
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQ-PNVVIWRTLLGACTVHGDSDLA 411
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E K+L++E + GDYVL+ N+ A R+ D +++R+ M K PG SLV
Sbjct: 412 ELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLV 466
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 41/389 (10%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNL--GTQLHAVISKVGFQS-HVYVNTALVNMYVSLGF 118
+RP + T+ L+ C L G +HA + K+G + +V V TALV+MY G
Sbjct: 85 VRP--NHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQ 142
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR- 177
L + +FDE+ RN V+WN MI G ++ GE+ A LF++M R+ +SWT ++ G+ +
Sbjct: 143 LDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKK 202
Query: 178 ---------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
A EP +TI++VL A GA+ I+ + K+ F +I++
Sbjct: 203 GCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKD-NIKI 261
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
SN LID Y++CGCI A ++FE + +++LVSW S+I GFA++G + A+E F M+K
Sbjct: 262 SNSLIDMYSRCGCIRLARQVFEQMP--KRSLVSWNSMIVGFALNGHAEEALEFFNLMRKE 319
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
G +P+ V+F L ACSH GL HYGCLVD+ RAGRLE
Sbjct: 320 GFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLED 379
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A + +P + +VV+ LL AC HG+V + ER+ + + E++ G+ +YVL+ NI A
Sbjct: 380 ALNVIANMPMKPNEVVLGS-LLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYA 438
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
VGR+ A ++R+ M K PG S +
Sbjct: 439 AVGRWDGASKVRKKMKALGIHKKPGFSSI 467
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 62/237 (26%)
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAI--WQNGAVRN 208
P +VSWT + + R +R A P+ IT L +L A + +R
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV-------------- 254
IH Y K G + ++ V L+D Y+KCG + A +F+++ V
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 255 ---------------ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
++ +SWTS+I GF G + A+E F MQ G++P+ VT +S
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 300 VLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
VL AC++ G L G L+DM R G + A ++ +P
Sbjct: 230 VLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP 286
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/392 (34%), Positives = 218/392 (55%), Gaps = 41/392 (10%)
Query: 60 SPLRPLFDSFTYSFLIRTCV-TLSYP---NLGTQLHAVISKVGFQSHVYVNTALVNMYVS 115
SP P+ + T ++ C + S P L +HA + K+ F SH+ ++T LV Y +
Sbjct: 4 SPAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFA 62
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
+ +LFD +P R+ VT+N +I+GL++ G + A +F+ MP + VSWT ++DG
Sbjct: 63 SRLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGC 122
Query: 176 TRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+ R + A EP +T++AV+ A + GA+ +H ++G +
Sbjct: 123 VKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-N 181
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+R++N LID YA+CG + A ++F + ++ +VSW S+I GFA +G AVE+FE M
Sbjct: 182 VRIANSLIDMYARCGQVELARQVFS--GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAM 239
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGR 323
++ G KP+ VTF VL ACSHGGL HYGC+VD+LGR+G+
Sbjct: 240 RREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQ 299
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
LE+A ++ +P +VV+ +L G C HG+V M E++ + +LE++ G +YVL+ N
Sbjct: 300 LEEAMRVVTTMPMRPNEVVLGALLAG-CRMHGDVGMAEQLMQHLLELDPGGDANYVLLSN 358
Query: 384 ILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
I A VG++ A ++R +M R K PG S V
Sbjct: 359 IYAAVGKWDGAGKVRSLMKARGLRKRPGYSAV 390
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 202/371 (54%), Gaps = 49/371 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT+ F+++ C L G LH+++ K+GF S VYV L++ Y GFL + K+F
Sbjct: 86 DHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVF 142
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+E+PER+LV+W+ MI K G A +LF+ M V
Sbjct: 143 EEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTV-------------------- 182
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P E+ +L+V+ AI G + + I G+ + G F + + L+D +++CGCI ++
Sbjct: 183 KPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLE-FTVSLGTALVDMFSRCGCIEESM 241
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++F+++ +N+++WT++I+G A+HG A+ F M+ G +P+ VTF VL ACSH
Sbjct: 242 RVFDEMG--ERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSH 299
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GGL HYGC+VD+LGRAG L +A K G+P + ++
Sbjct: 300 GGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIR-PNSIIW 358
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
R LLGAC H +E+ E+V K+ E++ + GDYVL+ N+ GVGR+ + +R M E+
Sbjct: 359 RTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREK 418
Query: 405 NALKFPGRSLV 415
K PG SL+
Sbjct: 419 RISKKPGCSLI 429
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 222/417 (53%), Gaps = 56/417 (13%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
L TN + H +N +L YSL+ SP + +Y+ +++ + D + SF +
Sbjct: 86 LLTNPFVSH---YNAMLRAYSLSRSPLEGLYMYRDMERQGVRA--------DPLSSSFAV 134
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
++C+ L G Q+HA I G Q+ + T+++++Y G +++ KLFDE+P++++V
Sbjct: 135 KSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVV 194
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
WNV+I+ L + A LFE M +S +P ++T L
Sbjct: 195 AWNVLISCLTRNKRTRDALGLFEIM-------------------QSPTYLCQPDKVTCLL 235
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
+L A A+ + IHGY ++ G+N + + N LI Y++CG + A ++F+ ++
Sbjct: 236 LLQACADLNALEFGERIHGYIQQHGYNT-ESNLCNSLISMYSRCGRMDKAYEVFDKMT-- 292
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
KN+VSW+++ISG +M+G G+ A+E F MQK G++P TF +VL+ACSH GL
Sbjct: 293 EKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMA 352
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGRAG L+QA ++ + + D + R LLGAC
Sbjct: 353 FFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVR-PDATMWRTLLGACRI 411
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
HG+ +GER+ ++E++ GDYVL+ NI + G + LR++M E+ P
Sbjct: 412 HGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTP 468
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 224/420 (53%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + ++ L+ ++++ +R L S T ++ C L N+G
Sbjct: 188 WNVMISGYNRSKQFDESMKLFDEMER--------MRVLPSSITLVSVLSACSKLKDLNVG 239
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + + + + AL++MY + G + + +FD + R++++W ++TG
Sbjct: 240 KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNL 299
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNR----------SNGASTEPSEITILAVL 197
G++ AR+ F++MP R+ VSWT ++DGY ++NR A+ +P E T++++L
Sbjct: 300 GQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 359
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA+ + I Y +K D V N LID Y CG + A+++F ++ +
Sbjct: 360 TACAHLGALELGEWIKAYIDKNEIK-IDSFVGNALIDMYFNCGNVEKAIRIFN--AMPHR 416
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ +SWT++I G A++G G+ A++ F +M K + P+ VT + VL AC+H G+
Sbjct: 417 DKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFF 476
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRAG L++A ++ +P + + +V LLGAC H
Sbjct: 477 ARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVK-PNSIVWGSLLGACRVHR 535
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ EM E +++LE+E NG YVL+ NI A R+ +R++M +R K PG SL+
Sbjct: 536 DEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLI 595
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 80/360 (22%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N ++ YS P A +Y ++ + + P D +TY FL++ +
Sbjct: 85 FVWNNMIKGYSRVGCPNSAVSMYCEMLE------RGVMP--DEYTYPFLLKRFTRDTAVK 136
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G +LH I K+GF S+V+V AL+++Y G + + +FD + ++VTWNVMI+G
Sbjct: 137 CGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYN 196
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ + + + LF+EM V+ PS IT+++VL A +
Sbjct: 197 RSKQFDESMKLFDEMERMRVL---------------------PSSITLVSVLSACSKLKD 235
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI------------- 252
+ + +H Y + + + N LID YA CG + +AL +F+++
Sbjct: 236 LNVGKRVHRYVKDLKIEPVRV-LENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVT 294
Query: 253 ----------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+ ++ VSWT++I G+ K + F MQ +KP+ T
Sbjct: 295 GFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFT 354
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+S+L AC+H G L G L+DM G +E+A +I +P
Sbjct: 355 MVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP 414
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 13/168 (7%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAVL 197
G++EYAR +F+ MP N W ++ GY+R+ N A + P E T +L
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
++ AV+ + +H + K GF++ ++ V N LI Y+ G + A +F+ S +
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSS-NVFVQNALIHLYSLSGEVSVARGVFDRSS--KG 183
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++V+W +ISG+ +++ F+ M+++ + P+ +T +SVL+ACS
Sbjct: 184 DVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 47/359 (13%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
Q V + +V+ Y+ LG + + +LFD +P+R++++WN +++G GE+E LFEE
Sbjct: 216 QRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEE 275
Query: 160 MPCRNVVSWTGILDGYTR--------------MNRSNGASTE-------PSEITILAVLP 198
MP RNV SW G++ GY R + G E P++ T++AVL
Sbjct: 276 MPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLT 335
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A + G + + +H Y E G+ ++ V N LID YAKCG I AL +F+ + V K+
Sbjct: 336 ACSRLGDLEMGKWVHVYAESIGYKG-NLFVGNALIDMYAKCGVIEKALDVFDGLDV--KD 392
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+++W +II+G AMHG A+ FERM++ G +P+ VTF+ +L+AC+H GL
Sbjct: 393 IITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQ 452
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+LGRAG +++A I +P E D V+ LLGAC + N
Sbjct: 453 SMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPME-PDAVIWAALLGACRMYKN 511
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VEM E ++++E+E N G++V++ NI +GR D RL+ M + K PG S++
Sbjct: 512 VEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVI 570
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 178/390 (45%), Gaps = 83/390 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + Y+ A+ +L+ ++ + SP + FT+ ++++C T + G
Sbjct: 88 WNAMFRGYAQANCHLDVVVLFARMHRA---GASP-----NCFTFPMVVKSCATANAAKEG 139
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLG--FLKDSSKLFDELPERNLVTWNVMITGLV 145
++H V++K GF+S+ +V AL++MY G F+ D+ K+F E+ ++N+ W ++ V
Sbjct: 140 EEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHV 199
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
++ AR LF+ P R+VV W ++ GY + A
Sbjct: 200 ACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAAR-------------------- 239
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+L ++ D+ N ++ YA G + S +KLFE++ V +N+ SW +
Sbjct: 240 ----ELFDRMPDR------DVMSWNTVLSGYATNGEVESFVKLFEEMPV--RNVYSWNGL 287
Query: 266 ISGFAMHGMGKAAVENFERM-------QKVG----LKPNRVTFLSVLNACSH-GGLHYG- 312
I G+ +G+ K A+E F+RM K G + PN T ++VL ACS G L G
Sbjct: 288 IGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGK 347
Query: 313 -------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
L+DM + G +E+A + G+ ++ D++ ++ +
Sbjct: 348 WVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGL--DVKDIITWNTIINGLAM 405
Query: 354 HGNV----EMGERVTRKVLEMERGNGGDYV 379
HG+V + ER+ R ER +G +V
Sbjct: 406 HGHVADALSLFERMKRA---GERPDGVTFV 432
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 26/228 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ +T ++ C L +G +H +G++ +++V AL++MY G ++ + +F
Sbjct: 326 NDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVF 385
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D L ++++TWN +I GL G + A SLFE RM R A
Sbjct: 386 DGLDVKDIITWNTIINGLAMHGHVADALSLFE------------------RMKR---AGE 424
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIFSA 245
P +T + +L A G VRN L+H ++ I C++D + G I A
Sbjct: 425 RPDGVTFVGILSACTHMGLVRN-GLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKA 483
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ + + +E + V W +++ M+ + A +R+ + L+PN
Sbjct: 484 VDIVRKMPME-PDAVIWAALLGACRMYKNVEMAELALQRL--IELEPN 528
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 57 HSHSPL-RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS 115
+ PL R + D F L+RTC T + Q+ A I G + + YV + +
Sbjct: 12 QTSKPLHRVVEDKFIS--LLRTCGTCVRLH---QIQAQIVTHGLEGNDYVTPSFITACAR 66
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
LG ++ + ++FD+ + N TWN M G + + C ++ +
Sbjct: 67 LGGIRRARRVFDKTAQPNGATWNAMFRG-------------YAQANCH-----LDVVVLF 108
Query: 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
RM+R+ GAS P+ T V+ + A + + +H KRGF + + V LI
Sbjct: 109 ARMHRA-GAS--PNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKS-NTFVGCALIHM 164
Query: 236 YAKCGCIF--SALKLFEDISVERKNLVSWTSIISG 268
Y+ G +F A K+F ++ KN+ +WT+I++
Sbjct: 165 YSLRGGVFVADAYKVFAEM--RDKNVFAWTAIVAA 197
>gi|242042081|ref|XP_002468435.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
gi|241922289|gb|EER95433.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
Length = 506
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 235/431 (54%), Gaps = 54/431 (12%)
Query: 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82
H +NTL+ ++++ SP L+ +++ +P D+FT++F++++C
Sbjct: 80 HLAFFYNTLIRGFAVSSSPSAGIELFTAMRRA---GAAP-----DAFTFTFVLKSCSRCH 131
Query: 83 YPN-LGTQLHAVISKVGFQS----HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
P L + LHA K G S HV+V+ AL++ Y S + D+ ++FDE+P R++V++
Sbjct: 132 SPGRLPSDLHAQAFKHGCLSARSEHVHVHNALLHAYASRSAVDDAHRVFDEMPVRDVVSF 191
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------STEPSE 190
+ ++T +K +L+ AR +F++MP R+VVSWT ++ Y R +R A +P E
Sbjct: 192 SGLLTAHLKNNQLDSARMVFDQMPHRDVVSWTAMISAYARASRPQDALALFDAMPVQPDE 251
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+T+++V+ A G + + + Y + GF + + + N L+D YAKCGC+ A +LF+
Sbjct: 252 VTMVSVVSACTALGDLATGERLRLYVDSNGFG-WMVSLRNALMDMYAKCGCLPEARELFD 310
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACSHGG 308
+++ ++L SW ++I +A HG ++ + F +M +KP+ VT L+VL +H G
Sbjct: 311 GMAI--RSLASWNTLILAYASHGDEESTIALFHQMLAHDNSVKPDGVTLLAVLTMYAHKG 368
Query: 309 L------------------------HYGCLVDMLGRAGRLEQAEKI--ALGIPSEITDVV 342
HYGC+VD+L RAG LE+A K+ + IPS + V
Sbjct: 369 CVEEGRTVFDAMQRGDYGKVELTVEHYGCMVDLLSRAGHLEEAYKMIEQMSIPS---NDV 425
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
V +LLGAC HGN++M E+ +K+ + GG Y+L+ ++ GR +A +RR M+
Sbjct: 426 VWGVLLGACRMHGNIDMAEKAVQKLRILNPHEGGYYILLIDMYTAAGRTAEAMEVRRTMN 485
Query: 403 ERNALKFPGRS 413
+ A K G S
Sbjct: 486 KTRAKKTTGWS 496
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 225/459 (49%), Gaps = 77/459 (16%)
Query: 22 LHHTLLF--NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79
+ H LF N ++ Y+ + +P AF+LY++++ + L+P DSFT+ +L+R C
Sbjct: 57 ISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEA------ARLKP--DSFTFCYLLRACA 108
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL------------KD------ 121
L G Q+H + K+G+ +V AL+NM+ G L +D
Sbjct: 109 GLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSA 168
Query: 122 -------------SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+ +LFDE ++LV WNVM+ K+GE+E AR L + P ++VVSW
Sbjct: 169 VIAGHAAKGELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSW 228
Query: 169 TGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
I+ GYT ++ P E TI+++L G++ ++IH
Sbjct: 229 NTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSL-HL 287
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
G I N L+ YAKCG + +A+++F ++ +++ +W SII G A HG + +
Sbjct: 288 EGRPCISILPGNALVSMYAKCGDVQAAMEVFS--RMKERDVWTWNSIIGGLAFHGQAEQS 345
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
V+ F +M GL PN ++FL VL ACSH GL HY C+VD
Sbjct: 346 VQFFNKMLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVD 405
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
MLGR+G L++A I + E VV+ R LLGAC HG+V +G+ ++L+M G
Sbjct: 406 MLGRSGLLDEAFAIVSSMRCEPA-VVIWRTLLGACRIHGDVALGKLARERLLKMNEDASG 464
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
DYVL+ I A + E +R MDER K G + V
Sbjct: 465 DYVLLSGIYASCDEWFGVETVRGSMDERGIRKVAGYAQV 503
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 245/490 (50%), Gaps = 114/490 (23%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ ++L SP +A LL+K++ + + ++P D FT+ +++ C L + G
Sbjct: 92 YNIMIRGFTLKQSPHEAILLFKEMHE------NSVQP--DEFTFPCILKVCSRLQALSEG 143
Query: 88 TQLHAVISKVGFQSHVYVNTALVNM-------------------------------YVSL 116
Q+HA+I K GF SH +V L++M Y
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203
Query: 117 GFLKDSSKLFDEL-----------------------------------PERNLVTWNVMI 141
G ++ KLF E+ E+ L +I
Sbjct: 204 GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI 263
Query: 142 TGLV----KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS----------NGASTE 187
T LV K G+++ AR LF++M R+VV+W+ ++ GY++ +R A+ +
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P+EIT++++L + GA+ + +H + +K+ + + L+D YAKCG + S+++
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMK-LTVTLGTALMDFYAKCGSVESSIE 382
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+F + V KN++SWT +I G A +G GK A+E F M + ++PN VTF+ VL+ACSH
Sbjct: 383 VFGKMPV--KNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHA 440
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+VD+LGRAG +E+A + +P + + V+ R
Sbjct: 441 GLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQ-PNAVIWR 499
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL +C H NVE+GE ++++ +E + GDY+L+ NI A VGR+ DA ++R M E+
Sbjct: 500 TLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKG 559
Query: 406 ALKFPGRSLV 415
K PG SL+
Sbjct: 560 IKKTPGCSLI 569
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 145/342 (42%), Gaps = 54/342 (15%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN---TALVNMYVSLGFLKD 121
LF + ++ C T+ N H + +++ + V N +A + + S+ +
Sbjct: 21 LFPENPKTLILEQCKTIRDLN-EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDY--- 76
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ +F ++ E + +N+MI G A LF+EM
Sbjct: 77 AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEM--------------------- 115
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+ S +P E T +L + A+ + IH K GF + V N LI YA CG
Sbjct: 116 HENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGF-VKNTLIHMYANCGE 174
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A ++F+++S +N+ +W S+ +G+ G + V+ F M ++ ++ + VT +SVL
Sbjct: 175 VEVARRVFDEMS--ERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVL 232
Query: 302 NACSHGGLHYGCLVDM-LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
AC G L D+ LG EK G P+ IT +V + C G V+
Sbjct: 233 TAC-------GRLADLELGEWINRYVEEKGLKGNPTLITSLV---DMYAKC---GQVDTA 279
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
R+ +M+R D V +++G Y A R R +D
Sbjct: 280 RRLFD---QMDR---RDVVAWSAMISG---YSQASRCREALD 312
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 208/380 (54%), Gaps = 33/380 (8%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D TY FL + L LG +H + K GF+ +V +L++MY S G + + K+F
Sbjct: 9 DHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYARKVF 68
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
D P +NLV+WN M+ G K G L+ AR LF+ MP R+V SW+ ++DGY +
Sbjct: 69 DGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMA 128
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ + + +E+T+++VL A GA+ +++H Y GF ++ + LID Y
Sbjct: 129 VFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFE-LNLVLRTSLIDMY 187
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A +F +S+ + +++ W ++I G A HG+ K +++ + MQ G+KP+ +T
Sbjct: 188 AKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEIT 247
Query: 297 FLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
FL +L+AC+HGGL HY C+VD++ RAG++ +A + +P
Sbjct: 248 FLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAEAYQFLCQMP 307
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
E T ++ +L G C HG +++ E + +K++E++ + G YV + N+ A R+ +A
Sbjct: 308 LEPTASMLGALLSG-CMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVYAIGRRWDEAR 366
Query: 396 RLRRVMDERNALKFPGRSLV 415
+R M+ R K PG S +
Sbjct: 367 IMREAMERRGVKKTPGYSFL 386
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 29/214 (13%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P + T ++ C L + G +H + GF+ ++ + T+L++MY G ++++
Sbjct: 138 PKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAF 197
Query: 124 KLFD--ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+F L + +++ WN MI GL G ++ + L+ EM
Sbjct: 198 AVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQI------------------- 238
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKC 239
A +P EIT L +L A G V+ + E G N + + C++D A+
Sbjct: 239 --AGIKPDEITFLCLLSACAHGGLVKQASYVF---EGLGKNGMTPKTEHYACMVDVMARA 293
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
G + A + + +E +++SG HG
Sbjct: 294 GQVAEAYQFLCQMPLE-PTASMLGALLSGCMNHG 326
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 226/420 (53%), Gaps = 57/420 (13%)
Query: 20 SLLHHTLLF--NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
+++H+ +F NT++ Y+ +D+P AFL Y+Q+ S + P D+ TY FL++
Sbjct: 76 TVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVV------SCVEP--DTHTYPFLLKA 127
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
G +H+V + GF+S V+V +L+++Y + G + + K+F+ + ER+LV W
Sbjct: 128 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAW 187
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
N MI G G A +LF EM V EP T++++L
Sbjct: 188 NSMINGFALNGRPNEALTLFREMSVEGV---------------------EPDGFTVVSLL 226
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A + GA+ + +H Y K G + + V+N L+D YAKCG I A ++F ++S +
Sbjct: 227 SASAELGALELGRRVHVYLLKVGLSK-NSHVTNSLLDLYAKCGAIREAQRVFSEMS--ER 283
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N VSWTS+I G A++G G+ A+E F+ M+ GL P+ +TF+ VL ACSH G+
Sbjct: 284 NAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYF 343
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+L RAG ++QA + +P + + V+ R LLGAC+ HG
Sbjct: 344 RRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQ-PNAVIWRTLLGACTIHG 402
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ +GE +L +E + GDYVL+ N+ A R+ D + +RR M + K PG SLV
Sbjct: 403 HLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLV 462
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 34/212 (16%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
+ YA ++F + NV +W I+ GY + + A EP T +L A
Sbjct: 68 MSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKA 127
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
I ++ VR + IH + GF + + V N L+ YA CG SA K+FE ++ ++L
Sbjct: 128 ISKSLNVREGEAIHSVTIRNGFESL-VFVQNSLLHIYAACGDTESAYKVFE--LMKERDL 184
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------ 312
V+W S+I+GFA++G A+ F M G++P+ T +S+L+A + G L G
Sbjct: 185 VAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVY 244
Query: 313 --------------CLVDMLGRAGRLEQAEKI 330
L+D+ + G + +A+++
Sbjct: 245 LLKVGLSKNSHVTNSLLDLYAKCGAIREAQRV 276
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 220/419 (52%), Gaps = 41/419 (9%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ YS + +P + ++ ++ + H +P D TY FL++ LS G
Sbjct: 82 WNIIIRGYSNSKNPIHSLSIFLKMLR---HGVAP-----DYLTYPFLVKASARLSKQKSG 133
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+HA I K G +S ++ +L++MY S G + + K+F+ + +NLV+WN M+ G K
Sbjct: 134 VSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKC 193
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVL 197
GE+ A+ +FE M R+V SW+ +DGY + + + +E+T+++VL
Sbjct: 194 GEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVL 253
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA++ +++H Y + + L+D YAKCG I AL +F IS +
Sbjct: 254 SACAHLGALQKGRMMHQY-IIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQT 312
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++ W ++I G A HG+ + +++ F+ MQ G++ + +T+L +L AC+HGGL
Sbjct: 313 DVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGGLVKEAWNFF 372
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HY C+VD+L RAG+L A + IP E T ++ I G C H N
Sbjct: 373 ESLVKRGMTPTSEHYACMVDVLARAGQLTTAYQFICQIPIEPTASMLGAIFSG-CINHRN 431
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ E V RK++E++ N G Y+ + N+ A V R+ D++ +R M+ R K PG S V
Sbjct: 432 FDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSKSMREAMERRGVKKSPGFSFV 490
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 121/282 (42%), Gaps = 71/282 (25%)
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT-------------RMNRSNGASTEP 188
+ L G+++Y+ +F ++ + SW I+ GY+ +M R A P
Sbjct: 56 SALSNSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVA---P 112
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+T ++ A + ++ +H K G + D + N LI YA CG I A K+
Sbjct: 113 DYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHES-DRFIQNSLIHMYASCGNIMWAHKV 171
Query: 249 FEDISVERKNLVSWTSIISGFAMHG---MGKAAVEN------------------------ 281
FE S++ KNLVSW S++ G+A G M + E+
Sbjct: 172 FE--SMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYRE 229
Query: 282 ----FERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVD 316
FE+M+ VG K N VT +SVL+AC+H G L G LVD
Sbjct: 230 AMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVD 289
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
M + G +E+A + GI TDV + ++G + HG VE
Sbjct: 290 MYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVE 331
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 221/439 (50%), Gaps = 60/439 (13%)
Query: 20 SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79
SL+H +NT++ Y +L+ +L H + P D+FT +I+ C
Sbjct: 80 SLIH----WNTIIKCYVENQFSHDGIVLFHEL----VHEYLP-----DNFTLPCVIKGCA 126
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER------- 132
L G Q+H + K+GF S V+V +LVNMY G + + K+FD + ++
Sbjct: 127 RLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNS 186
Query: 133 ----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---- 184
NLV+WN MI G +K G+ + A LF +MP ++V+W ++ GY + A
Sbjct: 187 LIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMF 246
Query: 185 ------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
+ PS T+++VL A+ + + IH Y EK GF D + LI+ YAK
Sbjct: 247 FMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFE-LDGILGTSLIEMYAK 305
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
CGCI SAL +F ++++K + WT+II G +HGM A+ F M K GLKPN + F+
Sbjct: 306 CGCIESALTVFR--AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFI 363
Query: 299 SVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPS 336
VLNAC+H GL HYGCLVD+L RAG LE+A+ +P
Sbjct: 364 GVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPI 423
Query: 337 EITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396
+ V+ LLG HG +++GE ++V+E+ G Y+L+ N+ A G +
Sbjct: 424 S-PNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSH 482
Query: 397 LRRVMDERNALKFPGRSLV 415
+R +M +R K PG S V
Sbjct: 483 VREMMYKRGFRKDPGCSSV 501
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 117/295 (39%), Gaps = 79/295 (26%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
+P L ++ + T S P QLHA K +H +V++ L+ +Y
Sbjct: 5 TPFHSLQQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSD---- 60
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
P+ N +L YARS+F+ + R+++ W I+ Y
Sbjct: 61 ----------PKIN---------------DLGYARSIFDRIQRRSLIHWNTIIKCYVENQ 95
Query: 180 RSNGA---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
S+ P T+ V+ + G V+ + IHG K GF + D+ V
Sbjct: 96 FSHDGIVLFHELVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS-DVFVQG 154
Query: 231 CLIDTYAKCGCIFSALKLFEDI---------SVERKNLVSWTSIISGFAMHGMGKAAVEN 281
L++ Y+KCG I A K+F+ + S+ NLVSW ++I+G+ G +A+E
Sbjct: 155 SLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALEL 214
Query: 282 FERMQ-------------------------------KVGLKPNRVTFLSVLNACS 305
F +M K+G +P+ T +SVL+A S
Sbjct: 215 FYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVS 269
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/421 (33%), Positives = 222/421 (52%), Gaps = 46/421 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT++ + + A LYK + Q + P +++T+SF++R C S
Sbjct: 75 TFIWNTIIRIFVEKNENATALSLYKNMLQ------TGFLP--NNYTFSFVLRACTDNSPV 126
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
L + HA + K+G++S+ +V L+++Y + ++ + KLFD R+++TW +I G
Sbjct: 127 GLAS--HAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGY 184
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITIL 194
VK G +E+AR LF++MP RN VSW+ ++ GY M N P+ I+
Sbjct: 185 VKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIV 244
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A G++ + + IH Y ++ G D + L+D YAKCGCI A +FE +
Sbjct: 245 GALTACSYLGSLDHGRWIHAYVDRNG-TELDRVLGTALVDMYAKCGCIEIACSVFEKMP- 302
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+ ++TS+ISG A HG A++ F RMQ + PN VTF+ VL+ACS GL
Sbjct: 303 -DKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGL 361
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG LE+A+++ +P E D V LL +C
Sbjct: 362 RIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPME-PDSYVLGALLNSCR 420
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HG+VE+G+ ++E +GG +VL+ N+ A ++ ++R+ M + K PG
Sbjct: 421 VHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGC 480
Query: 413 S 413
S
Sbjct: 481 S 481
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 142/357 (39%), Gaps = 97/357 (27%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
KLF LP R WN +I V+ E A SL++ M TG L +
Sbjct: 65 KLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNML------QTGFLPNNYTFSFVLR 118
Query: 184 ASTEPSEITILA---VLPAIWQNGAVRNCQLIHGYGEKRGFNA----FDIRVSNC----- 231
A T+ S + + + V+ W++ LIH Y A FD VS C
Sbjct: 119 ACTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFD--VSTCRDVIT 176
Query: 232 ---LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
LI+ Y K G + A +LF+ + +N VSW+++I+G+ GM + A+E F +Q
Sbjct: 177 WTALINGYVKSGHVEFARELFDQMP--ERNEVSWSAMITGYVHMGMFREALELFNDLQLT 234
Query: 289 GLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLE-- 325
GL+PN + L ACS+ G L +G LVDM + G +E
Sbjct: 235 GLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIA 294
Query: 326 --------------------------------------QAEKIALGIPSEITDVVVRRIL 347
Q+EK+ IP+E+T + V
Sbjct: 295 CSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKV---IPNEVTFICV---- 347
Query: 348 LGACSFHGNVEMGERV---TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
L ACS G V+ G R+ V +E G Y M ++L G +A+RL R M
Sbjct: 348 LSACSRMGLVDEGLRIFNCMSVVYGIEPGV-QHYGCMVDLLGRAGLLEEAKRLVREM 403
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 223/424 (52%), Gaps = 45/424 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N L+ Y + + K++ Y +++ + P+ SFT++ L + C
Sbjct: 112 FLYNALIRGYLIEERLKESTEFYSLMRK------EGVVPV--SFTFTALFKACGAKMDVG 163
Query: 86 LGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG Q+H VG F ++V ++++MY+ GFL+ K+FDE+P R++++W +I+
Sbjct: 164 LGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAY 223
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
VK G +E A LF+ +P +++V+WT ++ G+ + + A E EIT++
Sbjct: 224 VKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLI 283
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
V+ A Q GA + I EK F + V + LID Y+KCG + A ++F+
Sbjct: 284 GVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQ--G 341
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
++ +N+ S++S+I GFAMHG A++ F+ M K +KPNRVTF+ VL ACSH G+
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGRAGRL++A ++ +P E V LLGAC
Sbjct: 402 WQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIE-PHGGVWGALLGAC 460
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H + ++ + E+E G+Y+L+ NI A GR+ D +R++M R K P
Sbjct: 461 RIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPA 520
Query: 412 RSLV 415
S +
Sbjct: 521 FSWI 524
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 200/375 (53%), Gaps = 51/375 (13%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L DS T+ +++ L +G +H ++ ++GF VY +TALV++Y + + D+S+
Sbjct: 86 LPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ 145
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
LFDE+PERN VTWN +ITG + A F M + DG
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGM----------LADG---------- 185
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHG--YGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+PSE T++ VL A GA + IH Y + N F V LID YAKCG +
Sbjct: 186 -AQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVF---VGTALIDMYAKCGAV 241
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
+ K+FE+I KN+ +W +ISG+AM+G G AA++ F RM KP+ VTFL VL
Sbjct: 242 YEVEKVFEEI--REKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLC 299
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC H GL HYGC+VD+LGRAG LE+A ++ + E D
Sbjct: 300 ACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE-PD 358
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
++ R LL AC HGN ++GE + ++++E+E NG +YVL+ NI + R+ + +LR +
Sbjct: 359 PIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGM 418
Query: 401 MDERNALKFPGRSLV 415
M+ R K PG S +
Sbjct: 419 MNLRGIRKVPGCSSI 433
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 211/410 (51%), Gaps = 55/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ YSL +A + ++Q ++P +S T ++ C L G
Sbjct: 290 WNAIIGGYSLNSQHHEALAFFNRMQV------RGIKP--NSITMVSVLPACAHLFALEQG 341
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H + GF+S+ V ALVNMY G + + KLF+ +P++N+V WN +I+G +
Sbjct: 342 QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQH 401
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +LF EM + + +P I++VLPA A+
Sbjct: 402 GHPHEALALFIEMQAQGI---------------------KPDSFAIVSVLPACAHFLALE 440
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IHGY + GF + ++ V L+D YAKCG + +A KLFE + +++VSWT++I
Sbjct: 441 QGKQIHGYTIRSGFES-NVVVGTGLVDIYAKCGNVNTAQKLFERMP--EQDVVSWTTMIL 497
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
+ +HG G+ A+ F +MQ+ G K + + F ++L ACSH GL
Sbjct: 498 AYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLA 557
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY CLVD+LGRAG L++A I + E D V LLGAC H N+E+GE+ +
Sbjct: 558 PKLEHYACLVDLLGRAGHLDEANGIIKNMSLE-PDANVWGALLGACRIHCNIELGEQAAK 616
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E++ N G YVL+ NI A R+ D +LR++M E+ K PG S+V
Sbjct: 617 HLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVV 666
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 186/379 (49%), Gaps = 57/379 (15%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
KA LY Q+Q+ + + P D + +I+ C + S G ++H I GF+S
Sbjct: 103 KALRLYYQMQR------TGINP--DKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESD 154
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V V TAL +MY G L+++ ++FD +P+R++V+WN +I G + G+ A +LF EM
Sbjct: 155 VIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEM-- 212
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
+ NG +P+ T+++V+P A+ + IH Y + G
Sbjct: 213 -----------------QVNG--IKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIE 253
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ D+ V N L++ YAKCG + +A KLFE + + +++ SW +II G++++ A+ F
Sbjct: 254 S-DVLVVNGLVNMYAKCGNVNTAHKLFERMPI--RDVASWNAIIGGYSLNSQHHEALAFF 310
Query: 283 ERMQKVGLKPNRVTFLSVLNACSH------GGLHYG---------------CLVDMLGRA 321
RMQ G+KPN +T +SVL AC+H G +G LV+M +
Sbjct: 311 NRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKC 370
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G + A K+ +P + +VV ++ S HG+ E + + +G D +
Sbjct: 371 GNVNSAYKLFERMPKK--NVVAWNAIISGYSQHGHPH--EALALFIEMQAQGIKPDSFAI 426
Query: 382 YNILAGVGRYVDAERLRRV 400
++L ++ E+ +++
Sbjct: 427 VSVLPACAHFLALEQGKQI 445
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315
R N V W I G+ +G A+ + +MQ+ G+ P+++ FLSV+ AC G
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKAC-------GSQS 134
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
D+ +AGR + IA G S DV+V L + G++E +V
Sbjct: 135 DL--QAGRKVHEDIIARGFES---DVIVGTALASMYTKCGSLENARQV 177
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 198/356 (55%), Gaps = 37/356 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G LH K GF + V V TAL++MY G L + +FD++ RNLV+WN MI G
Sbjct: 108 FGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGY 167
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITIL 194
+K G+++ A LF+++P +NVVSWT ++ G+ + A P +T++
Sbjct: 168 MKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVI 227
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A++ A GA+ +H K+ F +++V N LID YA+CGCI A ++F+ +S
Sbjct: 228 AIISACANLGALGLGLWVHRLVMKKEFRD-NVKVLNSLIDMYARCGCIELARQVFDGMS- 285
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++NLVSW SII GFA++G+ A+ F M+K GL+PN V++ S L ACSH GL
Sbjct: 286 -QRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGL 344
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRL++A + +P +VV+ LL AC
Sbjct: 345 KIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGS-LLAACR 403
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
G+VE+ E+V + +E+ G +YVL NI A VG++ A ++RR M ER K
Sbjct: 404 TQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQK 459
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 223/420 (53%), Gaps = 43/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ Y P++A ++ ++ + + +P D T ++ L LG
Sbjct: 189 WNTLIGGYVRRGVPREALEMFWRM--VGDGAVTP-----DEVTMIGVVSGSAQLRDLELG 241
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH + G + V + +++MY+ G L+ + +F+ + ++ +V+W MI G ++
Sbjct: 242 RRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQF 301
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS----------NGASTEPSEITILAVL 197
G ++ AR +F+EMP R+V W ++ GY + R A EP +IT++ +L
Sbjct: 302 GLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLL 361
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ +H Y ++R + + + L+D Y+KCG I A+++F++I K
Sbjct: 362 SACSQLGALEMGMWVHHYIDRRRV-SLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP--EK 418
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N ++WT++ISG A HG A++ F+RM ++GL+P+ +TF+ VL+AC H GL
Sbjct: 419 NALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFF 478
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+LGRAG L++AE + +P E D VV L AC HG
Sbjct: 479 SLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPME-PDAVVWGALFFACRMHG 537
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ +GE+ K++E++ G+ G YVL+ N+ A A+++R +M K PG S +
Sbjct: 538 NITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCI 597
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 79/360 (21%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP D T+ FL++ C L N G + + +GF + V+V A ++ + ++
Sbjct: 117 RP--DHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEA 174
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
KLFD R+LV+WN +I G V+ G A +F W + DG
Sbjct: 175 RKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMF----------WRMVGDG-------- 216
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ P E+T++ V+ Q + + +HGY E G +R+ N ++D Y KCG +
Sbjct: 217 --AVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRC-TVRLMNVVMDMYIKCGDL 273
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGM---------------------------- 274
A +FE I ++K +VSWT++I G+A G+
Sbjct: 274 ERAKSVFEGI--DKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQ 331
Query: 275 ---GKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGC----------------- 313
GK A+ F MQ+ ++P+ +T +++L+ACS G L G
Sbjct: 332 CKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVML 391
Query: 314 ---LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
LVDM + G +E+A ++ IP + + + ++ + HG+ ++ + ++++E+
Sbjct: 392 GTNLVDMYSKCGNIEKAIRVFKEIPEK--NALTWTAMISGLANHGHADVAIKYFQRMIEL 449
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 213/417 (51%), Gaps = 73/417 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS----------- 115
D T+ F++++ LS +G LH I K G + +V +LV+MYV
Sbjct: 139 DRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVF 198
Query: 116 ------------------------LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELE 151
+G L +++LFD +P+++ +WN +I G +K G++
Sbjct: 199 DESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMG 258
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIW 201
A+ LF +MP +NVVSWT +++G+++ A P++ TI++ L A
Sbjct: 259 RAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACA 318
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+ GA+ IH Y GF ++ + L+D YAKCG I A K+F + + K L+
Sbjct: 319 KIGALDAGLRIHNYLSGNGFK-LNLVIGTALVDMYAKCGNIEHAEKVFHE--TKEKGLLI 375
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W+ +I G+A+HG + A++ FE M+ G KP+ V FL+VLNACSH G
Sbjct: 376 WSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMR 435
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVE 358
HY +VDMLGRAGRL++A K +P IT D VV L AC H NVE
Sbjct: 436 RGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMP--ITPDFVVWGALFCACRTHKNVE 493
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
M E ++K+L++E + G YV + N A VGR+ DAER+R M + A K PG S +
Sbjct: 494 MAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFI 550
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 33/274 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T+++ +S P+KA L+ + RP + +T + C + + G
Sbjct: 275 WTTMVNGFSQNGDPEKA------LETFFCMLEEGARP--NDYTIVSALSACAKIGALDAG 326
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H +S GF+ ++ + TALV+MY G ++ + K+F E E+ L+ W+VMI G
Sbjct: 327 LRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIH 386
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A FE M +TG T+P + LAVL A +G V
Sbjct: 387 GHFRKALQYFEWM------KFTG---------------TKPDSVVFLAVLNACSHSGQV- 424
Query: 208 NCQLIHGYGEKRGF-NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
N L +RG+ ++ ++D + G + ALK + + + V W ++
Sbjct: 425 NEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPIT-PDFVVWGALF 483
Query: 267 SGFAMH-GMGKAAVENFERMQKVGLKPNRVTFLS 299
H + A + + + +Q P FLS
Sbjct: 484 CACRTHKNVEMAELASKKLLQLEPKHPGSYVFLS 517
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
RV I + + + A+ +F+ E KN + ++I G A + ++++ F M
Sbjct: 75 RVVTQFISSCSSLNSVDYAISIFQRF--ELKNSYLFNALIRGLAENSRFESSISFFVLML 132
Query: 287 KVGLKPNRVTFLSVLN---ACSHGG----LHYG--------------CLVDMLGRAGRLE 325
K + P+R+TF VL A S+GG LH G LVDM + L
Sbjct: 133 KWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELG 192
Query: 326 QAEKIALGIPSEITD--VVVRRILLGACSFHGNVEMGE--RVTRKVLEMERGNGGDYVLM 381
A K+ P + + V++ +L+ HG MG+ + T M + + G + +
Sbjct: 193 SALKVFDESPESVKNGSVLIWNVLI-----HGYCRMGDLVKATELFDSMPKKDTGSWNSL 247
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKF 409
N +G A+ L M E+N + +
Sbjct: 248 INGFMKMGDMGRAKELFVKMPEKNVVSW 275
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/434 (32%), Positives = 232/434 (53%), Gaps = 54/434 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++N ++ +S +++P K LY ++ + + P + FTYSFLI C
Sbjct: 97 TTVWNQMIRGHSQSETPHKLVELYNRMVE------AEAEP--NEFTYSFLIGGCARSXLL 148
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---LKDSSKLFDELPERNLVTWNVMI 141
G Q+H + G+ ++V+V T+LVN+Y G ++ + ++FDE+ +RN+V+WN ++
Sbjct: 149 REGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLL 208
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEI 191
G V+ G+++ AR +F+EMP RNVVSWT ++ G ++ R A + ++
Sbjct: 209 AGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQV 268
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
++A L A + G ++ IH Y ++R G + ++N LI YA CG I A K+
Sbjct: 269 ALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKV 328
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL---KPNRVTFLSVLNACS 305
F I +++++ +SWTS+I+GFA G + A+ F+ MQ++G +P+ +TF+ VL ACS
Sbjct: 329 F--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACS 386
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
H G HYGC+VD+L RAG L++A ++ +P + D V
Sbjct: 387 HAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPND-AV 445
Query: 344 RRILLGACSFHGNVEMGERVTRK-VLEMERGNGGDY-VLMYNILAGVGRYVDAERLRRVM 401
LLG C H N E+ V +K VLE++ Y VL+ N+ A R+ D +R+ M
Sbjct: 446 WGALLGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKM 505
Query: 402 DERNALKFPGRSLV 415
E K GRS V
Sbjct: 506 VEIGVRKPAGRSWV 519
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 143/348 (41%), Gaps = 82/348 (23%)
Query: 50 QLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109
+ +Y H ++ L + L T +T Q+H I GF ++ L
Sbjct: 14 KCHDMYDHI-GEIQVLLEHMDDGSLEETHITCDTIKKLKQIHTQIIVNGFSQKNFLLVKL 72
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
++ Y++ G L ++ K+F+ + + WN MI G +++S E P +
Sbjct: 73 LSFYITSGNLLNAHKVFERIENPSTTVWNQMIRG--------HSQS---ETPHK------ 115
Query: 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY-------------- 215
+++ Y RM A EP+E T ++ ++ +R + +HG
Sbjct: 116 -LVELYNRMVE---AEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRT 171
Query: 216 -------------GEKRGFNAFDIRVS------NCLIDTYAKCGCIFSALKLFEDISVER 256
G ++ FD V N L+ Y +CG + A ++F+++
Sbjct: 172 SLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMP--E 229
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------- 308
+N+VSWT++I+G A G K A+ F M++ G+K ++V ++ L+AC+ G
Sbjct: 230 RNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWI 289
Query: 309 -------LHYG----------CLVDMLGRAGRLEQAEKIALGIPSEIT 339
LH G L+ M G +++A K+ +G+ T
Sbjct: 290 HSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRST 337
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/439 (32%), Positives = 230/439 (52%), Gaps = 56/439 (12%)
Query: 1 SPSSN-NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH 59
SPS + N I L T NS +NT++ YS + P +AF L+ +Q S
Sbjct: 40 SPSGDLNYARHILRTLHTPNSFY-----YNTMIRAYSDSTDPTRAFTLFLYMQNPDDASV 94
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
+ RP D FTY F+++ C + G Q+H ++ K G S Y+N AL+++Y G
Sbjct: 95 AVPRP--DHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEP 152
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ K+FD++P+R++V+W +I G V + P + +T +++
Sbjct: 153 NLAYKVFDKMPDRDVVSWTSIIDGFVD-----------NDRPIEAIRLFTHMIE------ 195
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
NG EP+E+T+ +VL A GA+ + IH + +++ F++ + VS LID YAKC
Sbjct: 196 --NG--IEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSS-NANVSTALIDMYAKC 250
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
GCI AL++F++ K++ WT+II+G A HG+ A+E FE M+K +K + +
Sbjct: 251 GCIDGALEVFDE--TLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITA 308
Query: 300 VLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
VL+A + GL HYGC+VDML RAGRL+ AE+ +P E
Sbjct: 309 VLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIE- 367
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTR--KVLEMERGNGGDYVLMYNILAGVGRYVDAER 396
D V+ R L+ C G+VE ER+ R ++L M+ + G YVL+ N+ A G++ + +
Sbjct: 368 PDAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAK 427
Query: 397 LRRVMDERNALKFPGRSLV 415
R +M +R +K P S +
Sbjct: 428 TRELMYQRGLMKPPACSRI 446
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 204/384 (53%), Gaps = 45/384 (11%)
Query: 70 TYSFLIRTCVTLSYPNL--GTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLF 126
T+ L+ C + + LH K G + HV V TAL++MY L + K+F
Sbjct: 94 TFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVF 153
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG------------ 174
L +N V+WN M+ G ++ GE+E A LF+EMP R+ +SWT +++G
Sbjct: 154 YNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALE 213
Query: 175 -YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
+ +M RS A+ ++I+AVL A GA+ +H + + F +I++SN LI
Sbjct: 214 CFHQMQRSGVAA---DYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKD-NIKISNSLI 269
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y++CGCI A ++F + + ++ LVSW SII GFA++G ++E F MQK G KP+
Sbjct: 270 DMYSRCGCIEFARQVF--VKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPD 327
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
V++ L ACSH GL HYGC+VD+ GRAGRLE A +
Sbjct: 328 GVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMI 387
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P + +VV+ LL AC HG+V + ER+ + + +++ YVL+ NI A +G++
Sbjct: 388 EEMPMKPNEVVLGS-LLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKW 446
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
A +RR M R K PG S V
Sbjct: 447 DGANNVRRTMKARGVQKKPGYSSV 470
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 62/228 (27%)
Query: 165 VVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAI--WQNGAVRNCQLI 212
+V WT L Y R R A EP+ IT + +L A + + + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---------------- 256
HGY K G + + V LID Y+KC + A K+F ++ V+
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 257 -------------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
++ +SWT++I+G HG + A+E F +MQ+ G+ + V+ ++VL A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 304 CSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
C+ G L G L+DM R G +E A ++
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQV 284
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 26/107 (24%)
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH---------GGL 309
+V WTS ++ + +G A F RM+ G++PN +TF+++L+AC+ L
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 310 H-YGC--------------LVDMLGRAGRLEQAEKI--ALGIPSEIT 339
H Y C L+DM + +L A K+ LG+ + ++
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVS 163
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 203/381 (53%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ T ++ C L + + I + + VY+ L++MY + + ++F
Sbjct: 895 DAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVF 954
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D + +RN+V+WN MI G K G L AR LF++MP R+V+SWT ++ Y++ + A
Sbjct: 955 DRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVR 1014
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P EIT+ +VL A GA+ + +H Y K NA DI V N LID Y
Sbjct: 1015 LFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNA-DIYVGNALIDMY 1073
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCG + L +FE++ +++ VSWTS+I+G A++G +A+ F M + G++P T
Sbjct: 1074 CKCGAVEKGLSVFEEMG--KRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGT 1131
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL AC+H G+ HYGC+VD+L R+G L +A + +
Sbjct: 1132 FVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRM 1191
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + DVVV RILL A HGN+ + E T+K+LE + N G+Y+L N AG R+ D
Sbjct: 1192 PMD-PDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDV 1250
Query: 395 ERLRRVMDERNALKFPGRSLV 415
++RR+M+E N K S V
Sbjct: 1251 IKMRRLMEESNVHKPSASSSV 1271
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 148/327 (45%), Gaps = 85/327 (25%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-DSFTYSFLIRTCVTLSYPNL 86
+N ++ +S + P +A Y + Y+ + LF ++ TY FL++ C +S +
Sbjct: 764 WNIMIRGWSQTNQPIEAIRNYNLM---YSQA------LFGNNLTYPFLLKACARISNVSC 814
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
T +HA + K+GF S ++V+ AL++ Y GF
Sbjct: 815 -TTVHARVLKLGFDSDLFVSNALIHGYA--GFC--------------------------- 844
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEITILAV 196
EL +AR +F+EM R++VSW ++ GY R R + A + +T++ V
Sbjct: 845 --ELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKV 902
Query: 197 LPA----------------IWQNGAVRNC----QLIHGYGE-------KRGFNAFDIR-- 227
+ A I +N + LI YG +R F+ R
Sbjct: 903 VLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNM 962
Query: 228 VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
VS N +I Y K G + +A KLF+D+ ++++SWTS+IS ++ G AV F+ M
Sbjct: 963 VSWNAMIMGYGKAGNLVAARKLFDDMP--HRDVISWTSMISSYSQAGQFGKAVRLFQEMM 1020
Query: 287 KVGLKPNRVTFLSVLNACSH-GGLHYG 312
+KP+ +T SVL+AC+H G L G
Sbjct: 1021 VTKVKPDEITVASVLSACAHIGALDVG 1047
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 43/193 (22%)
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGE---------LEYARSLFEEMPCRNVVSWTGIL 172
+++LF ++P L WN+MI G + + L Y+++LF N +++ +L
Sbjct: 749 ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFG-----NNLTYPFLL 803
Query: 173 DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
R++ +C +H K GF++ D+ VSN L
Sbjct: 804 KACARISNV--------------------------SCTTVHARVLKLGFDS-DLFVSNAL 836
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
I YA + A K+F+++S ++LVSW S+I G+ + FE M+ +K
Sbjct: 837 IHGYAGFCELGFARKVFDEMS--ERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKG 894
Query: 293 NRVTFLSVLNACS 305
+ VT + V+ AC+
Sbjct: 895 DAVTMVKVVLACT 907
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/479 (28%), Positives = 236/479 (49%), Gaps = 83/479 (17%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P + + I + + + N H N+++ Y+ + +P+ A +++++
Sbjct: 57 PKTVSYAHSILNRIESPNGFTH-----NSVIRAYANSSTPEIALTVFREML--------- 102
Query: 62 LRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY------- 113
L P+F D ++++F+++ C G Q+H + K + V+V L+N+Y
Sbjct: 103 LGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFE 162
Query: 114 ------------------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
+ G ++++ LFDE+ ERN+ +WN MI+G G
Sbjct: 163 IARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGL 222
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITILAVLP 198
++ AR +F+ MP ++VVSW ++ Y + N ++ P T++ VL
Sbjct: 223 VKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLS 282
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A G++ + +H Y +K G + V+ L+D Y+KCG I AL++F D S +++
Sbjct: 283 ACASLGSLSQGEWVHVYIDKHGIE-IEGFVATALVDMYSKCGKIDKALEVFRDTS--KRD 339
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+ +W SII+G ++HG+GK A+E F M G KPN +TF+ VL+AC+H GL
Sbjct: 340 VSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFE 399
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+LGR G+ E+AE++ +P++ +++ LLGAC G
Sbjct: 400 MMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLES-LLGACKRFGK 458
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+E ER+ ++LE YV M N+ A GR+ +A +R M K PG S++
Sbjct: 459 LEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMI 517
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 204/370 (55%), Gaps = 49/370 (13%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++S ++R+C LG H I K+GF+ + + T L++ Y G+++++ LFD +
Sbjct: 32 SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNM 91
Query: 130 PERNL--VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
ERN VTWN MI+ V+ GE A S+F++M NV +
Sbjct: 92 TERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV---------------------K 130
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P+E+T++++L A GA+ + IHGY + D+ + N LID Y KCG + +A+
Sbjct: 131 PTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLK-IDVVLGNALIDMYCKCGALEAAID 189
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+F +S RKN+ W SII G M+G G+ A+ F M+K G+KP+ VTF+ +L+ CSH
Sbjct: 190 VFHGLS--RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHS 247
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+VD+LGRAG L++A ++ +P + +V+
Sbjct: 248 GLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGS 307
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL AC H + ++GE+VT+++LE++ +GG+YV + N+ A + R+ D R++M +R
Sbjct: 308 -LLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRG 366
Query: 406 ALKFPGRSLV 415
K PG S +
Sbjct: 367 VHKTPGCSSI 376
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
PS+ + +L + +G + + H K GF +D+ + L+D YAK G + A
Sbjct: 28 PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFE-YDMILQTGLLDFYAKHGYVEEARN 86
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH- 306
LF++++ N V+W ++IS + G A+ F++MQ +KP VT +S+L+AC+H
Sbjct: 87 LFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHL 146
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
G L G L+DM + G LE A + G+
Sbjct: 147 GALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGL 194
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 236/470 (50%), Gaps = 63/470 (13%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P ++ R H L + H LL F LA P F +L + H
Sbjct: 14 PLTSFAVLRQHHSQLIRLGVASHAAHARRLLSF--LARDPDSHFPYASRLLAHHPDPHPA 71
Query: 62 L-RPLF----------------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98
L PLF D FT+ ++ + L +L QLHA++ K+G
Sbjct: 72 LFNPLFSALPTRHAARLLALMLSLPLRPDHFTFPQILPSAQPL---HLVAQLHALLLKLG 128
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERNLVTWNVMITGLVKWGELEYARSLF 157
F +H AL+ Y++ +S++F ++V+W M+ GL+K G + AR LF
Sbjct: 129 FHAHTQSLNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLF 188
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV----------LPAIWQNGAVR 207
+ MP RN+VSW ++ GY + R A E+ V + A GA+
Sbjct: 189 DGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALA 248
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + E+ G D +++ ++D Y KCGC+ A ++FE + + K L +W +I
Sbjct: 249 RGREVHRWVEQSGIQ-MDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIG 307
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
GFA+HG G+ A++ F RM++ G+ P+ VT ++VL AC+H G+
Sbjct: 308 GFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIE 367
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VD+ GRAGRLE+A+K+ +P E DV V L GA HG+V++GE +
Sbjct: 368 PKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME-PDVGVLGALFGASKIHGDVDLGEAIGW 426
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+V+E++ N G YVL+ N+LA GR+ D R+RR+MDERN K GRS++
Sbjct: 427 RVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVI 476
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 217/391 (55%), Gaps = 41/391 (10%)
Query: 61 PLRPLFDSFTYSFLIRTCV-TLSYP---NLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 116
P P+ + T ++ C + S P L +HA + K+ F SH+ ++T LV Y +
Sbjct: 94 PAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFAS 152
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
+ +LFD +P R+ VT+N +I+GL++ G + A +F+ MP + VSWT ++DG
Sbjct: 153 RLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCV 212
Query: 177 RMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
+ R + A EP +T++AV+ A + GA+ +H ++G ++
Sbjct: 213 KNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-NV 271
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
R++N LID YA+CG + A ++F + ++ +VSW S+I GFA +G AVE+FE M+
Sbjct: 272 RIANSLIDMYARCGQVELARQVFS--GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMR 329
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
+ G KP+ VTF VL ACSHGGL HYGC+VD+LGR+G+L
Sbjct: 330 REGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQL 389
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
E+A ++ +P +VV+ +L G C HG+V M E++ + +LE++ G +YVL+ NI
Sbjct: 390 EEAMRVVTTMPMRPNEVVLGALLAG-CRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNI 448
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A VG++ A ++R +M R K PG S V
Sbjct: 449 YAAVGKWDGAGKVRSLMKARGLRKRPGYSAV 479
>gi|147767785|emb|CAN66974.1| hypothetical protein VITISV_022076 [Vitis vinifera]
Length = 967
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 212/448 (47%), Gaps = 76/448 (16%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
S S+ ++ RI +HL L F S +P + L KQ + +
Sbjct: 510 SSSTKSLAARILAHLNVXQDL------HGKKWSFTSAKQNPTSSSLRCKQAHSDFGNGSC 563
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
F + ++ LI C +LS G LH K GF V+ TALV+MY LG L
Sbjct: 564 ----FFTACSWKALISACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLS 619
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ K FDE+ R++ TWN MI G + G+LE A LF MP RNV SWT ++ GY + +
Sbjct: 620 LARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQ 679
Query: 181 SNGA---------STE--PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
A TE P+E+T+ +VLPA GA+ + I Y G+ ++ VS
Sbjct: 680 YAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFK-NLYVS 738
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N L++ YA+CG I A +FE+I R+ G
Sbjct: 739 NALLEMYARCGRIDKAWGVFEEIDGRRE-------------------------------G 767
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
P+ VTF+ VL AC+HGG+ HYGC+VD+LGRAG L +A
Sbjct: 768 AAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREA 827
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ L +P E D VV LLGACSFHG+VE+ E+ + E+E N G+YV++ NI A
Sbjct: 828 HDLILRMPME-PDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYAT 886
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ RLR++M K G S +
Sbjct: 887 AGRWDGVARLRKLMKGGKITKAAGYSFI 914
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 199/375 (53%), Gaps = 51/375 (13%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L DS T+ +++ L +G +H ++ ++GF VY +TALV++Y + + D+S+
Sbjct: 86 LPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQ 145
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
LFDE+PERN VTWN +ITG + A F M + DG
Sbjct: 146 LFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGM----------LADG---------- 185
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHG--YGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+PSE T++ VL A GA + IH Y + N F V LID YAKCG +
Sbjct: 186 -AQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVF---VGTALIDMYAKCGAV 241
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
+ K+FE+I KN+ +W +ISG+AM+G G AA++ F RM KP+ VTFL VL
Sbjct: 242 YEVEKVFEEI--REKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLC 299
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC H GL HYGC+VD+LGRAG LE+A ++ + E D
Sbjct: 300 ACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE-PD 358
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
++ R LL AC HGN ++GE + ++++E+E NG +YVL+ NI + R+ + +LR +
Sbjct: 359 PIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGM 418
Query: 401 MDERNALKFPGRSLV 415
M R K PG S +
Sbjct: 419 MSLRGIRKVPGCSSI 433
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 219/420 (52%), Gaps = 43/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ +S + +P+ A L+ + + + P R TY + + L + G
Sbjct: 91 WNTVIRGFSQSSNPQIALYLF--IDMLVSSQVEPQR-----LTYPSIFKAYSQLGLAHDG 143
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLH I K+G Q ++ ++ MY + GFL ++ ++F++ E ++V+WN MI GL K
Sbjct: 144 AQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKC 203
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVL 197
GE++ +R LF++MP +N +SW ++ GY R + +PSE T++++L
Sbjct: 204 GEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLL 263
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+R IH Y +K I V+ +ID Y KCG I +AL++FE I +
Sbjct: 264 NASAQIGALRQGVWIHEYIKKNNLQLNAIVVT-AIIDMYCKCGSIGNALQVFEKIPC--R 320
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+L SW S+I G A++G K A+ F+ ++ LKP+ ++F++VL AC+HG +
Sbjct: 321 SLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFF 380
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY +VDM+ RAG LE+AE+ +P E D ++ LL AC +G
Sbjct: 381 SRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIE-KDAIIWGCLLSACRIYG 439
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N EM +R KV E++ YVLM NI A +V A R M + K PG S +
Sbjct: 440 NTEMAKRAAEKVNELDPEETMGYVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFI 499
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 44/210 (20%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITILAV 196
G ++YA +F +M N+ SW ++ G+++ + + EP +T ++
Sbjct: 71 GNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSI 130
Query: 197 LPAIWQNGAVRNCQLIHG--------------------YG-------EKRGFNA---FDI 226
A Q G + +HG Y +R FN FD+
Sbjct: 131 FKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDV 190
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
N +I AKCG I + KLF+ + V KN +SW S+I G+ +GM K A++ F +MQ
Sbjct: 191 VSWNSMILGLAKCGEIDESRKLFDKMPV--KNPISWNSMIGGYVRNGMFKEALKLFIKMQ 248
Query: 287 KVGLKPNRVTFLSVLNACSH-GGLHYGCLV 315
+ ++P+ T +S+LNA + G L G +
Sbjct: 249 EERIQPSEFTMVSLLNASAQIGALRQGVWI 278
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 233/427 (54%), Gaps = 50/427 (11%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T +NTL+ +S + +P + L + ++++ +S +P D F+++FL+++ + + P
Sbjct: 72 TFFYNTLIRAHSHSTTPSFSSLFFNRMRR---NSIAP-----DEFSFTFLLKS-RSFTMP 122
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP----ERNLVTWNVM 140
L +H + K GF H++V AL+++Y G + K+F++ + ++V+W+ +
Sbjct: 123 -LVHDIHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGL 181
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSE 190
+ K GEL+ AR +F+ MP R+VVSWT +L Y++ R + A P E
Sbjct: 182 LVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDE 241
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+T+L+V+ A + G +++H + E+ GF + + + N LID Y KCGC+ A ++F+
Sbjct: 242 VTVLSVISACAELGDAEMGRMVHKFVEENGFG-WMVALCNSLIDMYGKCGCLEEAWQVFD 300
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+RK+L++W +++ A HG + A FE M G+ P+ VT L++L A +H G
Sbjct: 301 --RTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFV 358
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYG +VDMLGR+GRL++A + +P DV+ LL
Sbjct: 359 DEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVI-WGALL 417
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
GAC HG+V MGERV +K+LE++ GG Y+L+ +I GR +A +R+ M A K
Sbjct: 418 GACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGRTAEANEMRQAMLASGARK 477
Query: 409 FPGRSLV 415
PG S V
Sbjct: 478 NPGCSWV 484
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 69/281 (24%)
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAV 196
+G+L YA ++F++MP + ++ ++ NR S P E + +
Sbjct: 54 FGDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFL 113
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED----- 251
L + ++ + IHG K GF + V N LI YA G SA K+FED
Sbjct: 114 LKS--RSFTMPLVHDIHGAVFKFGF-CRHLHVQNALIHLYAVGGVTISARKVFEDAVRVG 170
Query: 252 --------------------ISVERK--------NLVSWTSIISGFAMHGMGKAAVENFE 283
+ V RK ++VSWT ++S ++ ++ F+
Sbjct: 171 LDVDIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQ 230
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGG-------LH-------YG-------CLVDMLGRAG 322
M+ G+ P+ VT LSV++AC+ G +H +G L+DM G+ G
Sbjct: 231 EMRLAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCG 290
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
LE+A ++ ++ ++ ++ C+ HG E R+
Sbjct: 291 CLEEAWQVF--DRTKRKSLITWNAMMMVCANHGYAEDAFRL 329
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 209/405 (51%), Gaps = 46/405 (11%)
Query: 54 IYTHS----HSPLRPLFDSFTYSFLIRTCVTLSYP-------NLGTQLHAVISKVGFQSH 102
I+ HS H P L L+ T TLS +LG LHA K+
Sbjct: 94 IHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSLGRALHAYAFKLALSGD 153
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
YV TAL++MY G + LFDE+P+ ++V+ M+T G L+ AR LF+ +P
Sbjct: 154 SYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPR 213
Query: 163 RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLI 212
++ + W ++DGYT+ + N A S EP E+T++ VL A+ Q G V + + +
Sbjct: 214 KDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWL 273
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y + ++RV+ L+D Y KCG + A+ +F I K++V W ++I+G+AMH
Sbjct: 274 HSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIG--NKDIVVWNAMINGYAMH 331
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G + A+E F +++ GL P +TF+ +LNACSH GL H
Sbjct: 332 GDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEH 391
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
YGC+VD+LGRAG +E+A + + + D V+ LL AC H N+ +G+R+ ++
Sbjct: 392 YGCMVDLLGRAGLIEEAFHLVQSL-TITPDAVMWVSLLAACRLHKNMALGQRIADFLVAN 450
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N G Y+L+ NI A VG++ + R+R +M K PG S +
Sbjct: 451 GLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAI 495
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 204/384 (53%), Gaps = 45/384 (11%)
Query: 70 TYSFLIRTCVTLSYPNL--GTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLF 126
T+ L+ C + + LH K G + HV V TAL++MY L + K+F
Sbjct: 94 TFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVF 153
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG------------ 174
L +N V+WN M+ G ++ GE+E A LF+EMP R+ +SWT +++G
Sbjct: 154 YNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALE 213
Query: 175 -YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
+ +M RS A+ ++I+AVL A GA+ +H + + F +I++SN LI
Sbjct: 214 CFHQMQRSGVAA---DYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKD-NIKISNSLI 269
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y++CGCI A ++F + + ++ LVSW SII GFA++G ++E F MQK G KP+
Sbjct: 270 DMYSRCGCIEFARQVF--VKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPD 327
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
V++ L ACSH GL HYGC+VD+ GRAGRLE A +
Sbjct: 328 GVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMI 387
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P + +VV+ LL AC HG+V + ER+ + + +++ YVL+ NI A +G++
Sbjct: 388 EEMPMKPNEVVLGS-LLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKW 446
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
A +RR M R K PG S V
Sbjct: 447 DGANNVRRTMKARGVQKKPGYSSV 470
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 62/228 (27%)
Query: 165 VVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAI--WQNGAVRNCQLI 212
+V WT L Y R R A EP+ IT + +L A + + + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---------------- 256
HGY K G + + V LID Y+KC + A K+F ++ V+
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 257 -------------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
++ +SWT++I+G HG + A+E F +MQ+ G+ + V+ ++VL A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 304 CSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
C+ G L G L+DM R G +E A ++
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQV 284
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 26/107 (24%)
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH---------GGL 309
+V WTS ++ + +G A F RM+ G++PN +TF+++L+AC+ L
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 310 H-YGC--------------LVDMLGRAGRLEQAEKI--ALGIPSEIT 339
H Y C L+DM + +L A K+ LG+ + ++
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVS 163
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 221/431 (51%), Gaps = 45/431 (10%)
Query: 13 SHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
+H + TN + +N +++ ++L P KA LL+++++ ++P + T
Sbjct: 227 AHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEM------KDVKP--NVITMV 278
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
++ C G + + I GF H+ +N A+++MYV G + D+ LF+++ E+
Sbjct: 279 SVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEK 338
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------- 184
++V+W M+ G K G + A +F+ MP + +W ++ Y + + A
Sbjct: 339 DIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQ 398
Query: 185 ---STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+P E+T++ L A Q GA+ IH Y +K N + ++ L+D YAKCG
Sbjct: 399 LSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDIN-LNCHLATSLLDMYAKCGN 457
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A+++F +VERK++ W+++I AM+G GKAA++ F M + +KPN VTF ++L
Sbjct: 458 LNKAMEVFH--AVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNIL 515
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
AC+H GL HY C+VD+ GRAG LE+A +P T
Sbjct: 516 CACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPT 575
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
V LLGACS HGNVE+ E + +LE+E N G +VL+ NI A G + LR+
Sbjct: 576 -AAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRK 634
Query: 400 VMDERNALKFP 410
+M + + K P
Sbjct: 635 LMRDSDVKKEP 645
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 173/395 (43%), Gaps = 86/395 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ Y+ + P ++FL++ L +++ S P + FT+ FL + L +LG
Sbjct: 140 WNTLIRGYASSSDPTQSFLIF--LHMLHSCSEFP-----NKFTFPFLFKAASRLKVLHLG 192
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ LH ++ K S +++ +L+N Y S G + ++F +P +++V+WN MI
Sbjct: 193 SVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALG 252
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A LF+EM ++V +P+ IT+++VL A + +
Sbjct: 253 GLPDKALLLFQEMEMKDV---------------------KPNVITMVSVLSACAKKIDLE 291
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS--- 264
+ I Y E GF I ++N ++D Y KCGCI A LF +S K++VSWT+
Sbjct: 292 FGRWICSYIENNGFTEHLI-LNNAMLDMYVKCGCINDAKDLFNKMS--EKDIVSWTTMLD 348
Query: 265 ----------------------------IISGFAMHGMGKAAVENFERMQ-KVGLKPNRV 295
+IS + +G + A+ F MQ KP+ V
Sbjct: 349 GHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEV 408
Query: 296 TFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T + L A + G + +G L+DM + G L +A ++ +
Sbjct: 409 TLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAV 468
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
E DV V ++GA + +G + + +LE
Sbjct: 469 --ERKDVYVWSAMIGALAMYGQGKAALDLFSSMLE 501
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTR-----------MNRSNGASTEPSEITILAVLP 198
L YA+++F ++P N+ W ++ GY ++ + S P++ T +
Sbjct: 122 LIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK 181
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A + + ++HG K ++ D+ + N LI+ Y G A ++F ++ K+
Sbjct: 182 AASRLKVLHLGSVLHGMVIKASLSS-DLFILNSLINFYGSSGAPDLAHRVFTNMP--GKD 238
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+VSW ++I+ FA+ G+ A+ F+ M+ +KPN +T +SVL+AC+
Sbjct: 239 VVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACA 285
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 236/470 (50%), Gaps = 63/470 (13%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P ++ R H L + H LL F LA P F +L + H
Sbjct: 14 PLTSFALLRQHHSQLIRLGVASHAAHARRLLSF--LARDPDSHFPYASRLLAHHPDPHPA 71
Query: 62 L-RPLF----------------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98
L PLF D FT+ ++ + L +L QLHA++ K+G
Sbjct: 72 LFNPLFSALPTRHAARLLALMLSLPLRPDHFTFPQILPSAQPL---HLVAQLHALLLKLG 128
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERNLVTWNVMITGLVKWGELEYARSLF 157
F +H AL+ Y++ +S++F ++V+W M+ GL+K G + AR LF
Sbjct: 129 FHAHTQSLNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLF 188
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV----------LPAIWQNGAVR 207
+ MP RN+VSW ++ GY + R A E+ V + A GA+
Sbjct: 189 DGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALA 248
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + E+ G D +++ ++D Y KCGC+ A ++FE + + K L +W +I
Sbjct: 249 RGREVHRWVEQSGIQ-MDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIG 307
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
GFA+HG G+ A++ F RM++ G+ P+ VT ++VL AC+H G+
Sbjct: 308 GFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIE 367
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VD+ GRAGRLE+A+K+ +P E DV V L GA HG+V++GE +
Sbjct: 368 PKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME-PDVGVLGALFGASKIHGDVDLGEAIGW 426
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+V+E++ N G YVL+ N+LA GR+ D R+RR+MDERN K GRS++
Sbjct: 427 RVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVI 476
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 213/421 (50%), Gaps = 73/421 (17%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP D T F++++ L LG LH + K+G + +V +LV+MYV +G L
Sbjct: 134 IRP--DRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGF 191
Query: 122 SSKLFDE-----------------------------------LPERNLVTWNVMITGLVK 146
+LFDE +PERN +WN +I G V+
Sbjct: 192 GLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVR 251
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
G+L+ AR LF +MP +NVVSWT +++G+++ A P+++T+++
Sbjct: 252 NGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSA 311
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A + GA++ + IH Y GF + + L+D YAKCG I SA ++F + +
Sbjct: 312 LLACTKIGALQVGERIHNYLSSNGFQ-LNRGIGTALVDMYAKCGNIKSASRVF--VETKG 368
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------- 308
K+L++W+ +I G+A+HG A++ F +M+ G+ P+ V FL++L ACSH G
Sbjct: 369 KDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNF 428
Query: 309 --------------LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY +VD+LGRAGRL++A +P D V+ L AC H
Sbjct: 429 FESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPIN-PDFVIWGALFCACRAH 487
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
N+EM E K+L++E + G YV + N+ A VGR+ D ER+R +M R K PG S
Sbjct: 488 KNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSY 547
Query: 415 V 415
+
Sbjct: 548 I 548
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 137/424 (32%), Positives = 224/424 (52%), Gaps = 55/424 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N +L Y+ +P++ L+ + SP D T+ +I +C +L P L
Sbjct: 234 WNAMLSGYAQGGAPEETIRLFNDML-------SPGNVQPDETTWVTVISSCSSLGDPCLS 286
Query: 88 TQL-HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL---PERNLVTWNVMITG 143
+ + VGF+ + +V TAL++M+ G L+ + K+F++L R+ V WN MI+
Sbjct: 287 ESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISA 346
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEIT 192
+ G+L AR LF++MP R+ VSW ++ GYT+ S A ++P E+T
Sbjct: 347 YARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVT 406
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGE------KRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+++V A G + G G K I V N LI Y++CG + A+
Sbjct: 407 MVSVFSACGHLGEL-------GLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAV 459
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F++++ ++LVS+ ++ISGFA HG G ++E +M++ G++P+R+T++++L ACSH
Sbjct: 460 LIFQEMAT--RDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSH 517
Query: 307 GGL-----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
GL HY C++DMLGRAGRLE+A K+ +P E + LL
Sbjct: 518 AGLLGEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPME-PHAGIYGSLLN 576
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
A S H VE+GE K+ ++E N G+YVL+ NI A GR+ D +++R M ++ K
Sbjct: 577 ATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKT 636
Query: 410 PGRS 413
G S
Sbjct: 637 TGLS 640
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 170/424 (40%), Gaps = 117/424 (27%)
Query: 92 AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-------------------- 131
A + K G+ YV ++ +Y G ++ + KLFDE+P+
Sbjct: 123 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 182
Query: 132 ---------------RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
RN++TW MITG K G L+ AR F++MP R+VVSW +L GY
Sbjct: 183 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 242
Query: 177 R-----------MNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHGYGEKRGFNAF 224
+ + + + +P E T + V+ + G + ++ + GF
Sbjct: 243 QGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRP- 301
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISV------------------------------ 254
+ V L+D +AKCG + +A K+FE + V
Sbjct: 302 NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFD 361
Query: 255 --ERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACSHGGL-- 309
+++ VSW S+I+G+ +G A++ FE M KP+ VT +SV +AC H G
Sbjct: 362 KMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELG 421
Query: 310 ------------H-------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
H Y L+ M R G ++ A I + + D+V L+
Sbjct: 422 LGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATR--DLVSYNTLISG 479
Query: 351 CSFHGN----VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+ HG+ +E+ ++ +E +R Y+ + + G + +RL +
Sbjct: 480 FAEHGHGMESIELLLKMKEDGIEPDRIT---YIAILTACSHAGLLGEGQRLFE------S 530
Query: 407 LKFP 410
+KFP
Sbjct: 531 IKFP 534
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 214/393 (54%), Gaps = 60/393 (15%)
Query: 51 LQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110
L+ + T + + P + T++ +++ C T + G ++H I + G+ ++V +L+
Sbjct: 234 LELLETMQQAEVAP--NKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291
Query: 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
MY G L+++ KLF +LP R++VTW M+TG + G + A +LF M + +
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI----- 346
Query: 171 ILDGYTRMNRSNGASTEPSEITILAVL-----PAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+P ++T +VL PA Q G + QL+H G+N D
Sbjct: 347 ----------------KPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-----GYN-LD 384
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG-FAMHGMGKAAVENFER 284
+ + + L+ YAKCG + A +F +S +N+V+WT+II+G A HG + A+E F++
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMS--ERNVVAWTAIITGCCAQHGRCREALEYFDQ 442
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M+K G+KP++VTF SVL+AC+H GL HY C VD+LGRAG
Sbjct: 443 MKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAG 502
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
LE+AE + L +P I V LL AC H +VE GER VL+++ + G YV +
Sbjct: 503 HLEEAENVILSMPF-IPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALS 561
Query: 383 NILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+I A GRY DAE++R+VM++R+ +K PG+S +
Sbjct: 562 SIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWI 594
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 46/310 (14%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T+ L+ LG ++H I + G + V T+LV MY G + + +F
Sbjct: 147 DKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIF 206
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D LPE+N+VTW ++I G + G+++ A L E M A
Sbjct: 207 DRLPEKNVVTWTLLIAGYAQQGQVDVALELLETM---------------------QQAEV 245
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P++IT ++L A+ + + +H Y + G+ ++ V N LI Y KCG + A
Sbjct: 246 APNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGR-ELWVVNSLITMYCKCGGLEEAR 304
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS- 305
KLF D+ +++V+WT++++G+A G A+ F RMQ+ G+KP+++TF SVL +CS
Sbjct: 305 KLFSDLP--HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSS 362
Query: 306 ---------------HGGLH-----YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
H G + LV M + G ++ A + SE V
Sbjct: 363 PAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDA-SLVFNQMSERNVVAWTA 421
Query: 346 ILLGACSFHG 355
I+ G C+ HG
Sbjct: 422 IITGCCAQHG 431
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 45/289 (15%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S + L++ C L G ++HA I K G Q + Y+ L++MY G L D+ ++FD
Sbjct: 47 SDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD 106
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ +RN+V+W MI V + A +E M A +
Sbjct: 107 SIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKL---------------------AGCK 145
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P ++T +++L A ++ Q +H + G + RV L+ YAKCG I A
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLE-LEPRVGTSLVGMYAKCGDISKARV 204
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-- 305
+F+ + KN+V+WT +I+G+A G A+E E MQ+ + PN++TF S+L C+
Sbjct: 205 IFDRLP--EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTP 262
Query: 306 ----HG-GLH-------YG-------CLVDMLGRAGRLEQAEKIALGIP 335
HG +H YG L+ M + G LE+A K+ +P
Sbjct: 263 AALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311
>gi|414864742|tpg|DAA43299.1| TPA: hypothetical protein ZEAMMB73_867482 [Zea mays]
Length = 501
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 198/358 (55%), Gaps = 45/358 (12%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
+ ++V +LV+MY + ++++FDE+P NLV+WN ++ G K +L AR +F
Sbjct: 93 LPADLHVANSLVHMYAACALPDHANRVFDEIPRPNLVSWNALLDGYAKCHDLPAARKVFA 152
Query: 159 EMPCRNVVSWTGILDGYTRM----------------------NRSNGASTEPSEITILAV 196
MP R+VVSW+ ++DG + G +++T+++V
Sbjct: 153 RMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSAEEEDGGGGARANDVTMVSV 212
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A Q G + + H +RGF A ++R++ L+D YAKCG I A+++F + VE
Sbjct: 213 LGACAQLGDLERGRRAHRCLRERGF-ALNLRLATSLVDMYAKCGAISEAMEVFWAVPVES 271
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++ W ++I G A+HGM +VE F MQ+ G+ P+ +T+L +L+AC+HGGL
Sbjct: 272 TDVLIWNAVIGGLAVHGMATKSVEIFLEMQRAGVAPDEITYLCLLSACAHGGLVDEAWEF 331
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CLVD+LGRAGRLE+ + +P + + V V LL AC HG
Sbjct: 332 FRSLEAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPS-VSVLGALLNACHLHG 390
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
VE+GE + R++++++ + G Y+ + NI A R+ +A++ R+VM++R K PG S
Sbjct: 391 WVELGEVLGRRLVQLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEDRGVKKVPGFS 448
>gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa]
gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 143/439 (32%), Positives = 229/439 (52%), Gaps = 49/439 (11%)
Query: 13 SHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
SH L + +NT + A SP KA Q+YTH H P FD+F+
Sbjct: 6 SHFLKSTKWQIPRKSYNTWVLAIKNASSPHKAL-------QLYTHMHRQSIP-FDTFSIL 57
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
F +++C L + LH+ I K+GF +HVYV+T L++ Y + F + LFDE+P+R
Sbjct: 58 FTLKSCTHLKNLTIIHHLHSHIIKLGFNTHVYVSTCLLHAYAVMSF-DQACDLFDEMPQR 116
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN-RSNGAS------ 185
N+VTWN MITG + G + ARSLFE MP R+ SW+ ++ Y R G S
Sbjct: 117 NIVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMITCYINNGFRDQGLSFFQEMM 176
Query: 186 ----TEPSEITILAVLPAIWQNGA--VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+P ++T+ +VL G+ + + +HG+ K G+ ++ + L+D YAKC
Sbjct: 177 ANENPKPDQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVKNGWE-LNVDIGTLLVDMYAKC 235
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G +A+ +F + ++ +N+ +WT++I G A HG + + F+ MQ+ G++PN +TF
Sbjct: 236 GFFKNAVWVF--VLMQERNVSTWTALICGAAQHGFCQEVLSLFKMMQEAGVRPNEMTFTG 293
Query: 300 VLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+LNAC+ GL HYGC+VDM G+AG LE+A ++ + E
Sbjct: 294 ILNACARKGLIEEGRKYFKMIKETGLEPRIQHYGCMVDMFGKAGLLEEAYEVIKEMEFE- 352
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLE--MERGNGGDYVLMYNILAGVGRYVDAER 396
++V+ L AC H ++ +RV +VL +GG Y L+ ++ ++ DAER
Sbjct: 353 PNIVIWGSFLSACKMHKQFDIADRVIGQVLRDIKPENDGGIYSLVSDLYVLNKKWDDAER 412
Query: 397 LRRVMDERNALKFPGRSLV 415
+R ++ +N K G S +
Sbjct: 413 VRNLVLNQNVRKARGSSCI 431
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 140/422 (33%), Positives = 214/422 (50%), Gaps = 57/422 (13%)
Query: 18 TNSLLHHTLLFNTLLHFYS-LADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIR 76
++ L+ LFNTL+ Y+ S KA LY + H + P + FTY F+++
Sbjct: 89 ADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIML------HDAILP--NKFTYPFVLK 140
Query: 77 TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY-VSLGFLKDSSKLFDELPERNLV 135
C L NLG +H + K GF ++V +V+MY G + + K+FDE+P+ + V
Sbjct: 141 ACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSV 200
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
TW+ MI G + G A +LF EM V P EIT+++
Sbjct: 201 TWSAMIGGYARVGRSTEAVALFREMQMAEVC---------------------PDEITMVS 239
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
+L A GA+ + I Y E+ + + VSN LID +AKCG I ALKLF ++
Sbjct: 240 MLSACTDLGALELGKWIEAYIERHEIHK-PVEVSNALIDMFAKCGDISKALKLFR--AMN 296
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K +VSWTS+I G AMHG G+ A FE M G+ P+ V F+ +L+ACSH GL
Sbjct: 297 EKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGRE 356
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VDM R G +++A + +P E V++ R L+ AC
Sbjct: 357 YFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVIL-RTLVSACRG 415
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HG ++GE++T+ +++ E + +YVL+ NI A + ++R VM+ + K PG +
Sbjct: 416 HGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGST 475
Query: 414 LV 415
++
Sbjct: 476 MI 477
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 230/449 (51%), Gaps = 51/449 (11%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
S S+++ R+ SH+ N L+FN ++ YSL P ++ + ++
Sbjct: 48 SLSNSDYANRVFSHIQNPN-----VLVFNAMIKCYSLVGPPLESLSFFSSMKS------- 95
Query: 61 PLRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
R ++ D +TY+ L+++C +LS G +H + + GF + +V +Y S G +
Sbjct: 96 --RGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRM 153
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
D+ K+FDE+ ERN+V WN+MI G G++E LF++M R++VSW ++ ++
Sbjct: 154 GDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCG 213
Query: 180 RSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
R A +P E T++ VLP G + + IH E G I V
Sbjct: 214 RDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVG 273
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N L+D Y K G + +A +F + +R+N+VSW ++ISG A++G G+ ++ F+ M + G
Sbjct: 274 NALVDFYCKSGDLEAATAIFRKM--QRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEG 331
Query: 290 -LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+ PN TFL VL CS+ G HYG +VD++ R+GR+ +
Sbjct: 332 KVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITE 391
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A K +P + + LL AC HG+V++ E +++++E GN G+YVL+ N+ A
Sbjct: 392 AFKFLKNMPVN-ANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNLYA 450
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ D E++R +M + K G+S +
Sbjct: 451 EEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 231/427 (54%), Gaps = 50/427 (11%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC---VTLSY 83
L+N ++ YS + ++ L+ ++ + P++ + D +T++F+I +C ++L Y
Sbjct: 141 LWNVMIRTYSKIRNSQEPIHLFLRMLTL----DGPMQVVPDEYTFTFVITSCSHQISLIY 196
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G +H ++ K GF+S++YV +++NM ++D+ K+F+++ ER++ +W ++ G
Sbjct: 197 ---GEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGG 253
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST-----------EPSEIT 192
K GE++ A LF MP RN VSW ++ G+ R A T P+E
Sbjct: 254 YAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAV 313
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
++ VL A GA+ IH Y +K G +S LID YAKCG I A ++F I
Sbjct: 314 LVCVLSACAHLGALDQGNWIHLYIDKIGIRQSS-NISTALIDMYAKCGRIDCASRVFNGI 372
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+++++S+TS+ISG + HG+GK A+ F +M + PN +T L VLN CSH GL
Sbjct: 373 C--KRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEE 430
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC +D+LGRAG LE+A ++ +P E D+V+ R LL A
Sbjct: 431 GSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPME-PDIVIWRALLSA 489
Query: 351 CSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
H NV +GE++ + +++ NGG+ VL+ N+ A +GR+ +R++M +R +
Sbjct: 490 SRIHHNVNLGEQIISHIGQLKSSDHNGGE-VLLSNLYASLGRWERVTEMRKLMVDRRSES 548
Query: 409 FPGRSLV 415
PG S +
Sbjct: 549 SPGCSWI 555
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 131/336 (38%), Gaps = 77/336 (22%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN--LVTWNVMITGLVK 146
Q+HA + S+ + +L++ Y+ ++ LFD P + + WNVMI K
Sbjct: 92 QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSK 151
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
+ LF M LDG ++ P E T V+ + ++
Sbjct: 152 IRNSQEPIHLFLRML---------TLDGPMQV--------VPDEYTFTFVITSCSHQISL 194
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+++HG K GF + ++ V N +I+ + + A K+F +S +++ SWTS++
Sbjct: 195 IYGEIVHGMVVKSGFES-NLYVGNSVINMCSVFARMEDARKVFNQMS--ERDVFSWTSLL 251
Query: 267 SGFAMHGMGKAAVENFERMQ--------------------------------KVGLKPNR 294
G+A HG A E F M + PN
Sbjct: 252 GGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNE 311
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+ VL+AC+H G L G L+DM + GR++ A ++ G
Sbjct: 312 AVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNG 371
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
I DV+ ++ S+HG + RV ++L+
Sbjct: 372 ICKR--DVLSFTSMISGLSYHGLGKDALRVFYQMLD 405
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 141/434 (32%), Positives = 232/434 (53%), Gaps = 54/434 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++N ++ +S +++P K LY ++ + + P + FTYSFLI C
Sbjct: 81 TTVWNQMIRGHSQSETPHKLVELYNRMVE------AEAEP--NEFTYSFLIGGCARSRLL 132
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---LKDSSKLFDELPERNLVTWNVMI 141
G Q+H + G+ ++V+V T+LVN+Y G ++ + ++FDE+ +RN+V+WN ++
Sbjct: 133 REGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLL 192
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEI 191
G V+ G+++ AR +F+EMP RNVVSWT ++ G ++ R A + ++
Sbjct: 193 AGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQV 252
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
++A L A + G ++ IH Y ++R G + ++N LI YA CG I A K+
Sbjct: 253 ALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKV 312
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL---KPNRVTFLSVLNACS 305
F I +++++ +SWTS+I+GFA G + A+ F+ MQ++G +P+ +TF+ VL ACS
Sbjct: 313 F--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACS 370
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
H G HYGC+VD+L RAG L++A ++ +P + D V
Sbjct: 371 HAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPND-AV 429
Query: 344 RRILLGACSFHGNVEMGERVTRKV-LEMERGNGGDY-VLMYNILAGVGRYVDAERLRRVM 401
LLG C H N E+ V +K+ LE++ Y VL+ N+ A R+ D +R+ M
Sbjct: 430 WGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKM 489
Query: 402 DERNALKFPGRSLV 415
E K GRS V
Sbjct: 490 VEIGVRKPAGRSWV 503
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 138/324 (42%), Gaps = 84/324 (25%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++TC T+ Q+H I GF ++ L++ Y++ G L ++ K+F+ + +
Sbjct: 24 LLQTCDTIKKLK---QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPS 80
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
WN MI G +++S E P + +++ Y RM A EP+E T
Sbjct: 81 TTVWNQMIRG--------HSQS---ETPHK-------LVELYNRMVE---AEAEPNEFTY 119
Query: 194 LAVLPAIWQNGAVRNCQLIHGY---------------------------GEKRGFNAFDI 226
++ ++ +R + +HG G ++ FD
Sbjct: 120 SFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDE 179
Query: 227 RVS------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
V N L+ Y +CG + A ++F+++ +N+VSWT++I+G A G K A+
Sbjct: 180 IVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMP--ERNVVSWTTMIAGCAQIGRCKQALH 237
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGG---------------LHYG----------CLV 315
F M++ G+K ++V ++ L+AC+ G LH G L+
Sbjct: 238 LFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLI 297
Query: 316 DMLGRAGRLEQAEKIALGIPSEIT 339
M G +++A K+ +G+ T
Sbjct: 298 HMYASCGVIDKAYKVFIGMQQRST 321
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 223/419 (53%), Gaps = 41/419 (9%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ YS + +P ++ ++ ++ ++ +P D TY FL++ L G
Sbjct: 82 WNTIIRGYSNSKNPIQSLSIFLKMLRLGV---AP-----DYLTYPFLVKASARLLNQETG 133
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+HA I K G +S ++ +L++MY + G + K+FD + ++N+V+WN M+ G K
Sbjct: 134 VSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKC 193
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVL 197
GE+ A+ FE M ++V SW+ ++DGY + + A + +E+T+++V
Sbjct: 194 GEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVS 253
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA+ ++I+ Y G + + L+D YAKCG I AL +F +S +
Sbjct: 254 CACAHMGALEKGRMIYKYIVDNGL-PLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQT 312
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+++ W ++I G A HG+ + +++ F+ MQ VG+ P+ VT+L +L AC+HGGL
Sbjct: 313 DVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFF 372
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HY C+VD+L RAG+L A + +P+E T ++ +L G C H N
Sbjct: 373 ESLSKCGMTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLGALLSG-CINHRN 431
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + E V RK++E+E + G Y+ + N+ A R+ DA +R M+ R K PG S V
Sbjct: 432 LALAEIVGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRGVKKSPGFSFV 490
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 123/279 (44%), Gaps = 65/279 (23%)
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT----------------RMNRSNGAS 185
+ L G++ Y+ +F ++ + SW I+ GY+ R+ +
Sbjct: 56 SALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYL 115
Query: 186 TEP----------SEITILAVLPAIWQNGA-----VRNCQLIHGYG-------EKRGFNA 223
T P ++ T ++V I + G ++N LIH Y ++ F++
Sbjct: 116 TYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQN-SLIHMYAACGNSMWAQKVFDS 174
Query: 224 FDIR--VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ VS N ++D YAKCG + A K FE +S K++ SW+S+I G+ G A+
Sbjct: 175 IQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMS--EKDVRSWSSLIDGYVKAGEYSEAMA 232
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLG 319
FE+MQ G K N VT +SV AC+H G L G LVDM
Sbjct: 233 IFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYA 292
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
+ G +E+A I + TDV++ ++G + HG VE
Sbjct: 293 KCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVE 331
>gi|297721835|ref|NP_001173281.1| Os03g0169300 [Oryza sativa Japonica Group]
gi|19071631|gb|AAL84298.1|AC073556_15 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108706397|gb|ABF94192.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125585070|gb|EAZ25734.1| hypothetical protein OsJ_09569 [Oryza sativa Japonica Group]
gi|215769145|dbj|BAH01374.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674238|dbj|BAH92009.1| Os03g0169300 [Oryza sativa Japonica Group]
Length = 510
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 216/385 (56%), Gaps = 42/385 (10%)
Query: 67 DSFTYSFLIRTCV-TLSYPNLGTQLHAVISKVGF----QSHVYVNTALVNMYVSLGFLKD 121
D+FT++F +++C +S L + LHA K G SHV+V+ AL++ Y S + D
Sbjct: 120 DAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGD 179
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ ++FDE+P R++++++ ++T +K +L+ AR +F++MP R+VVSWT ++ Y R R
Sbjct: 180 ARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRP 239
Query: 182 NGA-------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
A +P E+T+L+V+ A G + + + Y + GF + + + N L+D
Sbjct: 240 QEALALFDAMPVQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFG-WMVSLRNALMD 298
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKP 292
YAKCG + A LF+ ++V ++L SW + IS +A HG ++ V F RM G +KP
Sbjct: 299 MYAKCGSLTEARNLFDGMTV--RSLASWNTFISAYASHGDVESTVALFHRMLADGKSVKP 356
Query: 293 NRVTFLSVLNACSHGGL------------------------HYGCLVDMLGRAGRLEQAE 328
+ T L+VL A +H G HYGC+VD+LGRAG+LE+A
Sbjct: 357 DGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQLEEAY 416
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
K+ +P ++ VV LLGAC HG++ M ER +K+ + GG Y+L+ ++ A
Sbjct: 417 KMIEQMPIP-SNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSDMYAAS 475
Query: 389 GRYVDAERLRRVMDERNALKFPGRS 413
GR +A +RR+M++ A K G+S
Sbjct: 476 GRTTEAMEIRRIMNQAGARKTAGQS 500
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 203/380 (53%), Gaps = 33/380 (8%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D TY F+ + LS L +H I+K G ++ +L++MY S G + + K+F
Sbjct: 111 DHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVF 170
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
DE+ RN V+WN M+ G K G+L+ AR +FE MP R+VVSW+ ++DG +
Sbjct: 171 DEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALA 230
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
R + +E+T+++VL A GA+ + +H Y F + + L+D Y
Sbjct: 231 IFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMR-FTLVLRTSLMDMY 289
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG I A+ +F + +++ +++ W +II G A HG+ ++E F+ MQ +G+ P+ +T
Sbjct: 290 AKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEIT 349
Query: 297 FLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+L + +AC+HGGL HY C+VD+L RAG+L +A +P
Sbjct: 350 YLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMP 409
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
E T ++ +L G C H ++ ERV RK++E+E + G Y+ + N+ AGV + +A
Sbjct: 410 MEPTASMLGALLNG-CMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNAR 468
Query: 396 RLRRVMDERNALKFPGRSLV 415
+R M+ R K PG S V
Sbjct: 469 MMREAMERRGVKKSPGFSFV 488
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 47/321 (14%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV--SLGFLKDSSKLFDELPE 131
L+ C ++S Q+ A G H + L++ S G + S ++F ++P
Sbjct: 18 LLENCRSMSEFK---QIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPS 74
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEM----PCRNVVSWTGILDGYTRMNRSNGASTE 187
+ WN +I G K + S+F +M C + +++ I R++ A
Sbjct: 75 PTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAV 134
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIRVS---NCLIDTYA 237
I +W + + N LIH YG ++ F+ IR S N ++D YA
Sbjct: 135 HCRIA----KEGLWFDRFIAN-SLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYA 189
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + SA ++FE S+ +++VSW+S+I G G A+ FERM+ VG K N VT
Sbjct: 190 KCGDLDSARQVFE--SMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTM 247
Query: 298 LSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPS 336
+SVL AC+H G L G L+DM + G +E+A + G+P
Sbjct: 248 VSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPM 307
Query: 337 EITDVVVRRILLGACSFHGNV 357
+ TDV++ ++G + HG V
Sbjct: 308 DQTDVLMWNTIIGGLATHGLV 328
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 223/420 (53%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
++ L+ Y + ++A +L+K++ + D ++ C L G
Sbjct: 257 WSALISCYEQNEMYEEALILFKEMNANGI--------MVDEVVVLSVLSACSRLLVVITG 308
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H ++ KVG +++V + AL++MY S + + KLF E + ++WN MI+G VK
Sbjct: 309 KLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKC 368
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GE+E AR+LF+ MP ++ VSW+ ++ GY + +R T+P E +++V+
Sbjct: 369 GEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVI 428
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A A+ + IH Y K G +I + LI+ Y K GC+ AL++F+ +E K
Sbjct: 429 SACTHLAALDQGKWIHAYIRKNGLK-INIILGTTLINMYMKLGCVEDALEVFK--GLEEK 485
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ +W ++I G AM+G+ +++ F M++ G+ PN +TF++VL AC H GL
Sbjct: 486 GVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHF 545
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRAG L++AE++ +P DV LLGAC +G
Sbjct: 546 NSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMA-PDVSTWGALLGACKKYG 604
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E GER+ RK++E+ + G VL+ NI A G +VD +R +M + +K PG S++
Sbjct: 605 DNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMI 664
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 128/526 (24%), Positives = 202/526 (38%), Gaps = 148/526 (28%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
N + +I SH+ N + NT++ Y +SP KA +YK + + +
Sbjct: 77 NQSYQIFSHIENPNGFI-----CNTMMKGYMQRNSPCKAIWVYKFMLESNVAA------- 124
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D++TY L ++C G + + KVGF S VY+ L+NMY G L D+ K+
Sbjct: 125 -DNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKV 183
Query: 126 FD-------------------------------ELPERNLVTWNVMITGLVKWGELEYAR 154
FD +PERN++ N MI K G +E A
Sbjct: 184 FDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEAC 243
Query: 155 SLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNG 204
LF EM +++VSW+ ++ Y + N E+ +L+VL A +
Sbjct: 244 KLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLL 303
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI------------ 252
V +L+HG K G + + + N LI Y+ C + +A KLF +
Sbjct: 304 VVITGKLVHGLVVKVGIETY-VNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMI 362
Query: 253 -----------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
S+ K+ VSW+++ISG+A + F+ MQ G KP+
Sbjct: 363 SGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDET 422
Query: 296 TFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
+SV++AC+H L G L++M + G +E A ++ G+
Sbjct: 423 ILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGL 482
Query: 335 -------------------------------------PSEITDVVVRRILLGACSFHGNV 357
P+EIT V V LGAC G V
Sbjct: 483 EEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAV----LGACRHMGLV 538
Query: 358 EMGERVTRKVLEMER--GNGGDYVLMYNILAGVGRYVDAERLRRVM 401
+ G R +++ + N Y M ++L G +AE L M
Sbjct: 539 DEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESM 584
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 223/485 (45%), Gaps = 105/485 (21%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+L+NT + YS S L+ ++++ S P D FTY LI+ C +
Sbjct: 88 TVLWNTYIKGYSENYSVSLTVSLFIRMKR------SDAVP--DKFTYPSLIKACSKVCGV 139
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMY------------------------------- 113
G H + G V+V T+L+++Y
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
S L ++ KLFDE+PE+N V+WN +I+G VK G+L AR +F+EMP RNVVS+T ++D
Sbjct: 200 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMID 259
Query: 174 GYTRMNR---------------------------SNGASTE--------------PSEIT 192
GY + NG E P E
Sbjct: 260 GYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFI 319
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+++++ A Q G++ + + Y K + V LID AKCG + A KLFE++
Sbjct: 320 MVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEM 379
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+++L+S+ S++ G ++HG G AV F RM GL P+ V F +L ACS GL
Sbjct: 380 P--KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDE 437
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HY C+VD+LGRAGRL++A ++ +P E LLGA
Sbjct: 438 GCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVE-PHAGAWGALLGA 496
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C H ++E+GE V ++ E+E N G+YVL+ NI A +++D LR M ER K P
Sbjct: 497 CKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIP 556
Query: 411 GRSLV 415
G S +
Sbjct: 557 GCSWI 561
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
LR + + S L++ C T S Q+HA I + G ++ + + + SL
Sbjct: 19 LRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSY 75
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
++ +F+ + + V WN I G + + SLF RM RS
Sbjct: 76 TTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLF------------------IRMKRS 117
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+ P + T +++ A + V+ HG + G D+ V LID Y KCG
Sbjct: 118 DAV---PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGE 173
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
I A K+F+++ +N+VSWT++I+G+A A + F+ M +
Sbjct: 174 ILCARKVFDEMG--ERNVVSWTAMIAGYASFSDLVEARKLFDEMPE 217
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 198/374 (52%), Gaps = 50/374 (13%)
Query: 67 DSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG--FLKDSS 123
+ FT+ FL++ C L P++G Q HA K GF + YV+ L++MY G FL D+
Sbjct: 125 NKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDAR 184
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+FD +P+ + VTW+ MI G V+ G A LF EM ++NG
Sbjct: 185 NVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREM-------------------QANG 225
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+ E+T++ VL A GA+ + + + E+ G + + N LIDT AKCG +
Sbjct: 226 VQAD--EVTVIGVLAAATDLGALELARWVRRFVEREGIGK-SVTLCNALIDTLAKCGDVD 282
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A+ +FE ++++++VSWTS+I AM G GK AV FE M+ G+ P+ V F+ VL A
Sbjct: 283 GAVAVFE--GMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTA 340
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
CSH G+ HYGC+VDM GRAG +E+A + +P + +
Sbjct: 341 CSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQ-PNP 399
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ R L+ AC HG +E+GE +TR +L + +Y+++ N+ A R+ + +RR M
Sbjct: 400 VIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREM 459
Query: 402 DERNALKFPGRSLV 415
+R K PG S+V
Sbjct: 460 SKRGIKKVPGCSIV 473
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 213/408 (52%), Gaps = 60/408 (14%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP D + ++ C ++ G +H + + G ++V ALV+MY G + +
Sbjct: 9 MRP--DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN----VVSWTGILDGYTR 177
+SK+FD + E+++V+WN M+ G + G E A LFE+M N VVSW+ ++ + +
Sbjct: 67 ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126
Query: 178 ----------------------------MNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
M + +G +P+ TI L A + A+R
Sbjct: 127 RGLGCETLDVFREMQHGEANDALELFSWMFKQDGL-VKPNCFTISCALIACARLAALRLG 185
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+ IH Y + F++ + V+NCLID YAK G I A +F+++ ++KN VSWTS+++G+
Sbjct: 186 RQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNL--KQKNFVSWTSLMTGY 243
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
MHG GK A+E F+ M++VGL+P+ VT L VL ACSH G+
Sbjct: 244 GMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPG 303
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HY C+VD+LGRAGRL +A ++ G+ E + +V +L G C H NVE+GE +++
Sbjct: 304 QEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSG-CRIHANVELGEHAAKQL 362
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
LE+ N G Y L+ NI A R+ D R+R +M K PG S V
Sbjct: 363 LELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWV 410
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/435 (32%), Positives = 225/435 (51%), Gaps = 56/435 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS-HSPLRPLFDSFTYSFLIRTCVTLSY 83
T ++N ++ Y+ + +P KA + YTH S P D FT+S L+ C
Sbjct: 6 TTVWNHVIRGYARSHTPWKAV-------ECYTHMVSSKAEP--DGFTHSSLLSACARGGL 56
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G Q+HA + G+ S+V+V+T+L+ Y G ++ + +FD +P+R++V+WN M+ G
Sbjct: 57 VKEGEQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAG 116
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEITI 193
V+ + + AR +F+ MPCRNVVSWT ++ G R +S A E ++ +
Sbjct: 117 YVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVAL 176
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEK----RGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+A L A + G ++ + IH Y ++ R + +R++N LI YA CG + A ++F
Sbjct: 177 VAALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVF 236
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-----PNRVTFLSVLNAC 304
+ + RK+ VSWTS+I FA G+GK A++ F+ M G+K P+ +TF+ VL AC
Sbjct: 237 --VKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCAC 294
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
SH G HYGC+VD+L RAG L++A + +P D
Sbjct: 295 SHAGFVDEGHQIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPND-A 353
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGN--GGDYVLMYNILAGVGRYVDAERLRRV 400
+ LLG C H N E+ +V K++ G+ G VL+ NI A R+ D +R+
Sbjct: 354 IWGALLGGCRIHRNSELASQVENKLVPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQK 413
Query: 401 MDERNALKFPGRSLV 415
M E K PGRS +
Sbjct: 414 MIEMGVKKPPGRSWI 428
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 215/385 (55%), Gaps = 41/385 (10%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
FDS++ +++++ V L+ LG Q+H V G +V V ++L+ MY S + + KL
Sbjct: 110 FDSYSLPYVLKSVVCLNDFGLGKQIHCVGVVTGLDKNVSVCSSLIQMY-SCYDVCSARKL 168
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN--VVSWTGILDGYTRMNRSNG 183
FDE V N MI VK G++ AR LF+ M R+ V SWT ++ GYT+ + N
Sbjct: 169 FDEFGGNGCVL-NAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNE 227
Query: 184 A----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
A + +P EI ILAVL A GA+ + IH Y EK + + + N LI
Sbjct: 228 AIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKI-VPLYNSLI 286
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKP 292
D YAK G I AL+LFE++ + K +++WT++I+G A+HG+GK A+ F M+K +KP
Sbjct: 287 DMYAKSGNIRKALELFENM--KHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKP 344
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
N VTF+++L+ACSH GL HYGC++D+LGRAG L++A+++
Sbjct: 345 NEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEM 404
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
L +P E + + LL A + G+ E+ E R + +E G+ G+Y L+ N A +GR
Sbjct: 405 VLRMPFE-ANAAIWGSLLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYASLGR 463
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+ ++ +R+VM + K PG S +
Sbjct: 464 WNESRMVRKVMQDAGVEKVPGVSFI 488
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 101/251 (40%), Gaps = 29/251 (11%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y+ A +P +A L++++Q ++P D ++ C L +LG +H I
Sbjct: 219 YTQAHNPNEAIKLFRRMQL------ENVKP--DEIAILAVLSACADLGALHLGEWIHNYI 270
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K V + +L++MY G ++ + +LF+ + + ++TW MI GL G + A
Sbjct: 271 EKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEAL 330
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
+F M + V +P+E+T +A+L A G V +
Sbjct: 331 RVFSCMEKEDRV--------------------KPNEVTFIAILSACSHVGLVELGRDYFT 370
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
R I C+ID + G + A ++ + E N W S+++ G
Sbjct: 371 SMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFE-ANAAIWGSLLAASTRCGD 429
Query: 275 GKAAVENFERM 285
+ A E +
Sbjct: 430 AELAEEALRHL 440
>gi|125542569|gb|EAY88708.1| hypothetical protein OsI_10183 [Oryza sativa Indica Group]
Length = 510
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 216/385 (56%), Gaps = 42/385 (10%)
Query: 67 DSFTYSFLIRTCV-TLSYPNLGTQLHAVISKVGF----QSHVYVNTALVNMYVSLGFLKD 121
D+FT++F +++C +S L + LHA K G SHV+V+ AL++ Y S + D
Sbjct: 120 DAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGD 179
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ ++FDE+P R++++++ ++T +K +L+ AR +F++MP R+VVSWT ++ Y R R
Sbjct: 180 ARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRP 239
Query: 182 NGA-------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
A +P E+T+L+V+ A G + + + Y + GF + + + N L+D
Sbjct: 240 REALALFDAMPVQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFG-WMVSLRNALMD 298
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKP 292
YAKCG + A LF+ ++V ++L SW + IS +A HG ++ V F RM G +KP
Sbjct: 299 MYAKCGSLTEARNLFDGMTV--RSLASWNTFISAYASHGDVESTVALFHRMLADGKSVKP 356
Query: 293 NRVTFLSVLNACSHGGL------------------------HYGCLVDMLGRAGRLEQAE 328
+ T L+VL A +H G HYGC+VD+LGRAG+LE+A
Sbjct: 357 DGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQLEEAY 416
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
K+ +P ++ VV LLGAC HG++ M ER +K+ + GG Y+L+ ++ A
Sbjct: 417 KMIEQMPIP-SNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSDMYAAS 475
Query: 389 GRYVDAERLRRVMDERNALKFPGRS 413
GR +A +RR+M++ A K G+S
Sbjct: 476 GRTTEAMEIRRIMNQAGAQKTAGQS 500
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/425 (32%), Positives = 226/425 (53%), Gaps = 56/425 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N +L Y+ +P++ L+ + SP D T++ +I +C +L P L
Sbjct: 219 WNAMLSGYAQGGAPEETIRLFNDML-------SPGNVQPDETTWATVISSCSSLGDPCLS 271
Query: 88 TQL-HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL---PERNLVTWNVMITG 143
+ + KVGF+ + +V TAL++M+ G L+ + K+F++L R+ V WN MI+
Sbjct: 272 ESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISA 331
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------------STEPSEI 191
+ G+L A+ LF++MP R+ VSW ++ GYT+ S A S +P E+
Sbjct: 332 YARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEV 391
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGE------KRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+++V A G + G G K I V N LI+ Y++CG + A
Sbjct: 392 TMVSVFSACGHLGEL-------GLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDA 444
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+ +F++++ ++LVS+ ++ISGFA HG G ++E +M++ G++P+R+T++++L ACS
Sbjct: 445 VLIFQEMAT--RDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACS 502
Query: 306 HGGL-----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
H GL HY C++DMLGRAGRLE+A K+ +P E + LL
Sbjct: 503 HAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPME-PHAGIYGSLL 561
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
A S H VE+GE K+ ++E N G+Y L+ NI A GR+ + +++R M ++ K
Sbjct: 562 NATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKK 621
Query: 409 FPGRS 413
G S
Sbjct: 622 TTGLS 626
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/491 (23%), Positives = 202/491 (41%), Gaps = 131/491 (26%)
Query: 27 LFNTLLHFYSLADSPKKAFL-LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+F +L +YS + F+ L+K + Q H ++P ++ YS ++++ + S
Sbjct: 54 VFTFMLKYYSQIGVHSQVFVSLFKHMLQ-----HCDIKP--NASFYSVMMKSAGSESMLF 106
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-------------- 131
L A + K G+ YV ++ +Y G ++ + KLFDE+P+
Sbjct: 107 L-----AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYW 161
Query: 132 ---------------------RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
RN++TW MITG K G L+ AR F++MP R+VVSW
Sbjct: 162 KCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNA 221
Query: 171 ILDGYTR-----------MNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHGYGEK 218
+L GY + + + + +P E T V+ + G + ++ +K
Sbjct: 222 MLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDK 281
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV------------------------ 254
GF + V L+D +AKCG + +A K+FE + V
Sbjct: 282 VGFRP-NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPS 340
Query: 255 --------ERKNLVSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNAC 304
+++ VSW S+I+G+ +G A++ FE M + KP+ VT +SV +AC
Sbjct: 341 AKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSAC 400
Query: 305 SHGGL--------------H-------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
H G H Y L++M R G ++ A I + + D+V
Sbjct: 401 GHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR--DLVS 458
Query: 344 RRILLGACSFHGN----VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
L+ + HG+ +E+ ++ +E +R Y+ + + G + +RL
Sbjct: 459 YNTLISGFAEHGHGMESIELLSKMKEDGIEPDRIT---YIAILTACSHAGLLDEGQRLFE 515
Query: 400 VMDERNALKFP 410
++KFP
Sbjct: 516 ------SIKFP 520
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 198/374 (52%), Gaps = 50/374 (13%)
Query: 67 DSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG--FLKDSS 123
+ FT+ FL++ C L P++G Q HA K GF + YV+ L++MY G FL D+
Sbjct: 125 NKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDAR 184
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+FD +P+ + VTW+ MI G V+ G A LF EM ++NG
Sbjct: 185 NVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREM-------------------QANG 225
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+ E+T++ VL A GA+ + + + E+ G + + N LIDT AKCG +
Sbjct: 226 VQAD--EVTVIGVLAAATDLGALELARWVRRFVEREGIGK-SVTLCNALIDTLAKCGDVD 282
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A+ +FE ++++++VSWTS+I AM G GK AV FE M+ G+ P+ V F+ VL A
Sbjct: 283 GAVAVFE--GMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTA 340
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
CSH G+ HYGC+VDM GRAG +E+A + +P + +
Sbjct: 341 CSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQ-PNP 399
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ R L+ AC HG +E+GE +TR +L + +Y+++ N+ A R+ + +RR M
Sbjct: 400 VIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREM 459
Query: 402 DERNALKFPGRSLV 415
+R K PG S+V
Sbjct: 460 SKRGIKKVPGCSIV 473
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 217/418 (51%), Gaps = 44/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ + A +A L++++++ L D FT+ L+ C +G
Sbjct: 177 WNTMIGGCAQAGETSEACALFREMRRQGV--------LADVFTFVSLLLVCSKEGNLEVG 228
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + G + + + ALV+MY G L + + FD +P +N+V+W M+ L K
Sbjct: 229 RLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKH 288
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVL 197
G ++ AR FE+MP RN++SW ++ Y + NR P E+T+ VL
Sbjct: 289 GSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVL 348
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
QNG + + ++IH Y + F+ + V N LID YA+CG + +++ LF ++ K
Sbjct: 349 SVHGQNGDLASGRMIHCYIQD-SFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMP--NK 405
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N +SW II AMHG + AV F M P+ +TF+ +L+ACSHGGL
Sbjct: 406 NTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYF 465
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+LGR G L +A + +P + DVVV L+GAC HG
Sbjct: 466 KAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMK-PDVVVWGALIGACRIHG 524
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+VE+G+ +++LE+E NGG +VL+ N+L ++ D +RLR++M +R K G S
Sbjct: 525 HVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVS 582
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 169/386 (43%), Gaps = 91/386 (23%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP--LFDSFTYSFLIRTCVTLSYPN 85
+N+L+ YS + P++A L++ + LR L + FT F+++ C
Sbjct: 75 YNSLIRAYSNSGCPQEALCLHRDV----------LRRGILPNEFTLPFVLKACSRARAAE 124
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL-PERNLVTWNVMITGL 144
H V K+G+ V+V AL++ S G L+DS +LF E+ P RN+V+WN MI G
Sbjct: 125 HALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGC 184
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ GE A +LF EM + V++ T +++L + G
Sbjct: 185 AQAGETSEACALFREMRRQGVLA---------------------DVFTFVSLLLVCSKEG 223
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ +L+H + G + D+ + N L+D Y KCG ++ A + F+ + + KN+VSWTS
Sbjct: 224 NLEVGRLVHCHMLASG-SRVDLILGNALVDMYGKCGDLWMAHRCFDVMPI--KNVVSWTS 280
Query: 265 IISGFAMHGMGKAAVENFE-------------------------------RMQKVGLKPN 293
++ A HG AA + FE RM+ +GL P+
Sbjct: 281 MLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPD 340
Query: 294 RVTFLSVLNACSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKIAL 332
VT VL+ G +H L+DM R G+++ + +
Sbjct: 341 EVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFT 400
Query: 333 GIPSEITDVVVRRILLGACSFHGNVE 358
+P++ T + +++GA + HG +
Sbjct: 401 EMPNKNT--ISWNVIIGALAMHGRAQ 424
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/511 (28%), Positives = 246/511 (48%), Gaps = 108/511 (21%)
Query: 2 PSSNNVTTRI-HSHLLTTNSLLHHT--LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS 58
P N+ + + H+ L ++ H L NT+++ + F LY Q +
Sbjct: 61 PRRNDAVSIVQHARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSK----- 115
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
RP S+T++ +++ C G Q+H V+ K F +YV T+LV+MYV G
Sbjct: 116 DCFFRP--SSYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGD 173
Query: 119 LKDSSKLFDELPERNLVTW-------------------------------NVMITGLVKW 147
+ + K+FDE+ R+LV+W NVMI G VK
Sbjct: 174 VGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKM 233
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYT------------------------------- 176
G ++ AR LF++M +NV+SWT ++ GY+
Sbjct: 234 GRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYC 293
Query: 177 RMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+ RS+ A E +E+T+++VLPA+ A+ +HG+ ++ +
Sbjct: 294 QNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDG-S 352
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ V N L+D YAKCG I A +FE+++ K+ SW ++I+G+ ++G K A+E F M
Sbjct: 353 VHVCNALVDMYAKCGEIGKAKLVFEEMT--EKDTGSWNALINGYGVNGCAKEALEVFAMM 410
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRL 324
+ G +PN++T SVL+AC+H GL HYGC++D+LGRAGRL
Sbjct: 411 LREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMERFGIVPQIEHYGCMIDLLGRAGRL 470
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
++AEK+ +P + ++++ L C F +V ER+ + ++ME+ GDYV++ N+
Sbjct: 471 DEAEKLIQAMPYDPNEIILTSFLFACCYFE-DVSRAERILKVAVKMEKEGAGDYVMLRNL 529
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A R+ D E ++ +M +R + K S++
Sbjct: 530 YATERRWADVEDVKEMMKKRGSNKEVAWSVI 560
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/426 (33%), Positives = 218/426 (51%), Gaps = 58/426 (13%)
Query: 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL 74
LL+TN L+ + +NTLL +S P F ++ SP D+FT+ FL
Sbjct: 51 LLSTNPTLN-SYYYNTLLRAFSQTPLPTPPF----HALSLFLSMPSPP----DNFTFPFL 101
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C P LG QLHA+++K+GF +Y+ L++MY G L + LFD +P R++
Sbjct: 102 LKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDV 161
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+W MI GLV A +LFE M E +E T++
Sbjct: 162 VSWTSMIGGLVNHDLPVEAINLFERML---------------------QCGVEVNEATVI 200
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI-RVSNCLIDTYAKCGCIFSALKLFEDIS 253
+VL A +GA+ + +H E+ G VS L+D YAK GCI SA K+F+D
Sbjct: 201 SVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDD-- 258
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
V +++ WT++ISG A HG+ K A++ F M+ G+KP+ T +VL AC + GL
Sbjct: 259 VVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREG 318
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
H+GCLVD+L RAGRL++AE +P E D V+ R L+ AC
Sbjct: 319 FMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIE-PDTVLWRTLIWAC 377
Query: 352 SFHGNVEMGERVTR--KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
HG+ + ER+ + ++ +M + G Y+L N+ A G++ + +R +M+++ +K
Sbjct: 378 KVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKP 437
Query: 410 PGRSLV 415
PG S +
Sbjct: 438 PGTSRI 443
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 38/247 (15%)
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEI 191
L +G+L YAR L P N + +L +++ + P
Sbjct: 37 AALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPSPPDNF 96
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T +L ++ + +H K GF A D+ + N L+ Y++ G + A LF+
Sbjct: 97 TFPFLLKCCSRSKLPPLGKQLHALLTKLGF-APDLYIQNVLLHMYSEFGDLLLARSLFD- 154
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLH 310
+ +++VSWTS+I G H + A+ FERM + G++ N T +SVL AC+ G L
Sbjct: 155 -RMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALS 213
Query: 311 YG----------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
G LVDM + G + A K+ + DV V ++
Sbjct: 214 MGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHR--DVFVWTAMI 271
Query: 349 GACSFHG 355
+ HG
Sbjct: 272 SGLASHG 278
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/425 (32%), Positives = 226/425 (53%), Gaps = 56/425 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N +L Y+ +P++ L+ + SP D T++ +I +C +L P L
Sbjct: 162 WNAMLSGYAQGGAPEETIRLFNDML-------SPGNVQPDETTWATVISSCSSLGDPCLS 214
Query: 88 TQL-HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL---PERNLVTWNVMITG 143
+ + KVGF+ + +V TAL++M+ G L+ + K+F++L R+ V WN MI+
Sbjct: 215 ESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISA 274
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------------STEPSEI 191
+ G+L A+ LF++MP R+ VSW ++ GYT+ S A S +P E+
Sbjct: 275 YARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEV 334
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGE------KRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+++V A G + G G K I V N LI+ Y++CG + A
Sbjct: 335 TMVSVFSACGHLGEL-------GLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDA 387
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+ +F++++ ++LVS+ ++ISGFA HG G ++E +M++ G++P+R+T++++L ACS
Sbjct: 388 VLIFQEMAT--RDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACS 445
Query: 306 HGGL-----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
H GL HY C++DMLGRAGRLE+A K+ +P E + LL
Sbjct: 446 HAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPME-PHAGIYGSLL 504
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
A S H VE+GE K+ ++E N G+Y L+ NI A GR+ + +++R M ++ K
Sbjct: 505 NATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKK 564
Query: 409 FPGRS 413
G S
Sbjct: 565 TTGLS 569
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 199/487 (40%), Gaps = 131/487 (26%)
Query: 31 LLHFYSLADSPKKAFL-LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQ 89
+L +YS + F+ L+K + Q H ++P ++ YS ++++ + S L
Sbjct: 1 MLKYYSQIGVHSQVFVSLFKHMLQ-----HCDIKP--NASFYSVMMKSAGSESMLFL--- 50
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE------------------ 131
A + K G+ YV ++ +Y G ++ + KLFDE+P+
Sbjct: 51 --AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGN 108
Query: 132 -----------------RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
RN++TW MITG K G L+ AR F++MP R+VVSW +L G
Sbjct: 109 EEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSG 168
Query: 175 YTRMNRS-----------NGASTEPSEITILAVLPAIWQNG-AVRNCQLIHGYGEKRGFN 222
Y + + + +P E T V+ + G + ++ +K GF
Sbjct: 169 YAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFR 228
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISV---------------------------- 254
+ V L+D +AKCG + +A K+FE + V
Sbjct: 229 P-NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHL 287
Query: 255 ----ERKNLVSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACSHGG 308
+++ VSW S+I+G+ +G A++ FE M + KP+ VT +SV +AC H G
Sbjct: 288 FDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLG 347
Query: 309 L--------------H-------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
H Y L++M R G ++ A I + + D+V L
Sbjct: 348 ELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR--DLVSYNTL 405
Query: 348 LGACSFHG----NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
+ + HG ++E+ ++ +E +R Y+ + + G + +RL
Sbjct: 406 ISGFAEHGHGMESIELLSKMKEDGIEPDRIT---YIAILTACSHAGLLDEGQRLFE---- 458
Query: 404 RNALKFP 410
++KFP
Sbjct: 459 --SIKFP 463
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 218/430 (50%), Gaps = 68/430 (15%)
Query: 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL------RPLFDSFTYSFL-------- 74
N+LLHFYS+ A ++ ++ S + L LFD FL
Sbjct: 144 NSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNV 203
Query: 75 ------IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
+ C + Y ++G +H ++ K F + V ALV+MYV L ++ KLFDE
Sbjct: 204 ATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDE 263
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
LP+R++V+W +I+GLV+ + + + LF +M V EP
Sbjct: 264 LPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGV---------------------EP 302
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
I + +VL A GA+ + + Y E++G +DI + L+D YAKCGCI AL +
Sbjct: 303 DRIILTSVLSACASLGALDYGRWVQEYIERQGIE-WDIHIGTALVDMYAKCGCIEMALHI 361
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F I +N+ +W +++ G AMHG G A+++FE M G++PN VTFL++L AC H G
Sbjct: 362 FNGIP--NRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSG 419
Query: 309 L-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
L HYGC++D+L RAG L++A K +P DV++
Sbjct: 420 LVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLP-PDVLIWG 478
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL AC +GNVE+ + + +LE++ + G YVL+ NI A R+ D R+RR+M ++
Sbjct: 479 ALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKG 538
Query: 406 ALKFPGRSLV 415
KFPG S++
Sbjct: 539 IRKFPGSSVI 548
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 168/360 (46%), Gaps = 72/360 (20%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
TL +NTL+ Y+ + +PK AFL+Y + I + P D +T+ +++ C
Sbjct: 70 TLPYNTLIAAYASSCTPKAAFLVYGR---IVGNGFVP-----DMYTFPVVLKACTKFLGV 121
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H V K+GF +YV +L++ Y G
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCG--------------------------- 154
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------STEPSEITILAVL 197
KWG A +F+EM R+VVSWTG++ GY R + A P+ T ++VL
Sbjct: 155 -KWGG---AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVL 210
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A + G + + +HG KR F + V N L+D Y KC C+ A KLF+++ +
Sbjct: 211 VACGRMGYLSMGKGVHGLVYKRAF-GIGLVVGNALVDMYVKCECLCEARKLFDELP--DR 267
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGLHYG---- 312
++VSWTSIISG K ++E F MQ G++P+R+ SVL+AC S G L YG
Sbjct: 268 DIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQ 327
Query: 313 ----------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
LVDM + G +E A I GIP+ ++ LLG + HG+
Sbjct: 328 EYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR--NIFTWNALLGGLAMHGH 385
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/453 (29%), Positives = 220/453 (48%), Gaps = 71/453 (15%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
++ +F L+ +S +P ++ +LY ++ +S F+ +++ C L
Sbjct: 71 NSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV------EFSIPSVLKACGKLLA 124
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+ G Q+H + K +V ++V MY+ G ++ + ++FD +P R++V+WN MI G
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------------- 186
+K GE+E A LF+EMP R++VS ++DGY + R A
Sbjct: 185 YLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMI 244
Query: 187 ------------------------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
P I++VL AI G V + +H Y
Sbjct: 245 SAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIE 304
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ + LID Y+KCG I +A +F IS R+N+ W S+ISG A+HG+ + A++ F
Sbjct: 305 LSSGFIGSALIDMYSKCGYIENAYHVFRSIS-HRRNIGDWNSMISGLAIHGLAREALDIF 363
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
M+++ ++PN +TFL +L+ CSHGGL HYGC++D+ GR
Sbjct: 364 VEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGR 423
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AGRLE A + +P E D++ + +L A HG++E+G+ + +E+ + YVL
Sbjct: 424 AGRLEDALGVIQNMPFE-ADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVL 482
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ NI A GR+ D ++R +M +R K G S
Sbjct: 483 LSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 515
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 219/415 (52%), Gaps = 57/415 (13%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT----LS 82
++N L +LA LY ++ + S D FTY++L++ CV +S
Sbjct: 137 VWNALFRALALAGRGNDVLELYPRMNMMGVSS--------DRFTYTYLLKACVASECLVS 188
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
+ G ++HA I + G+ +HV+V T L++MY G + +S +FDE+P +N+V+W+ MI
Sbjct: 189 FLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIA 248
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
K G+ A LF EM N + P+ +T+++VL A
Sbjct: 249 CYAKNGKPYEALELFREMML-------------------NTHDSVPNSVTMVSVLQACAA 289
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
A+ +LIH Y +RG ++ + V + LI YA+CG + S +F+ + +K++V W
Sbjct: 290 FAALEQGKLIHAYILRRGLDSI-LPVISALITMYARCGKLESGQLIFD--RMHKKDVVLW 346
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
S+IS + +HG G+ A++ FE M G P+ ++F+SVL ACSH GL
Sbjct: 347 NSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVK 406
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY C+VD+LGRA RL++A KI + E V LLGAC H +VE+
Sbjct: 407 EHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGS-LLGACRIHCHVELA 465
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
ER ++++ ++E N G+YVL+ +I A + + +R+++++D R K PGRS +
Sbjct: 466 ERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWI 520
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 52/331 (15%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
KQ + +H +P + T LI + + + +H ++ GF ++ T
Sbjct: 55 KQALYLLSHESNPTQQ-----TCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATK 109
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+NM+ L + ++ K+FD+ +R + WN + L G + E P N++
Sbjct: 110 LINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR---GNDVLELYPRMNMMGV 166
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI-HGYGEKRGFNAFDIR 227
+ YT + ++ AS L + Q G + ++ HGYG +
Sbjct: 167 SSDRFTYTYLLKACVASE---------CLVSFLQKGKEIHAHILRHGYGAH-------VH 210
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-- 285
V L+D YA+ GC+ A +F+++ V KN+VSW+++I+ +A +G A+E F M
Sbjct: 211 VMTTLMDMYARFGCVSYASAVFDEMPV--KNVVSWSAMIACYAKNGKPYEALELFREMML 268
Query: 286 QKVGLKPNRVTFLSVLNAC-SHGGLHYG--------------------CLVDMLGRAGRL 324
PN VT +SVL AC + L G L+ M R G+L
Sbjct: 269 NTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKL 328
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHG 355
E + I + + DVV+ L+ + HG
Sbjct: 329 ESGQLIFDRMHKK--DVVLWNSLISSYGLHG 357
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/483 (29%), Positives = 230/483 (47%), Gaps = 116/483 (24%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L N+L+ ++L P +AF ++ ++Q+ + D+FTY FL++ C LS+ +
Sbjct: 84 LCNSLIRAHALNSQPYQAFFVFSEMQRFGLFA--------DNFTYPFLLKACSGLSWLPV 135
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMY--------------------------------- 113
+H I K+G S +YV AL++ Y
Sbjct: 136 VKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGL 195
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
V G L+D+ KLFDE+P+R+L++WN M+ G + E+ A LFE+MP RN VSW+ ++
Sbjct: 196 VKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVM 255
Query: 174 GYTRMNRSNGASTEPSEITILAVLPAIW--------QNGAVRNC-----QLI-------- 212
GY++ A ++ A W + G ++ Q++
Sbjct: 256 GYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDA 315
Query: 213 ----------------------HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
H +K N+ + V N L+D YAKCG + A +F
Sbjct: 316 AAAISILAACAESGLLSLGMRAHSIIKKSNLNS-NASVLNALLDMYAKCGSLKKAFDVFN 374
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
D+ +K+LVSW +++ G +HG GK A+E F RM+K G+ P++VTF++VL +C+H GL
Sbjct: 375 DMP--KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLI 432
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGCLVD+LGR GRL++A K+ +P E +VV+ LL
Sbjct: 433 DEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPME-PNVVIWGALL 491
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
GAC H V++ + V +++++ + G+Y L+ NI Y AE V D R+ +K
Sbjct: 492 GACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNI------YAAAEDWEGVADIRSKMK 545
Query: 409 FPG 411
G
Sbjct: 546 SMG 548
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
D+ ++ LI + C AL++F V+ N+ S+I A++ A F
Sbjct: 50 DLHIAPKLISALSLCRQTNLALRVFN--QVQEPNVHLCNSLIRAHALNSQPYQAFFVFSE 107
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
MQ+ GL + T+ +L ACS GL + +V M+ EK+ L +D+ V
Sbjct: 108 MQRFGLFADNFTYPFLLKACS--GLSWLPVVKMMH-----NHIEKLGLS-----SDIYVP 155
Query: 345 RILLGACSFHGNVEMGERVTRKVLE-MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ S G +G R K+ E M + + M L G DA +L M +
Sbjct: 156 NALIDCYSRCGG--LGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQ 213
Query: 404 RNALKF 409
R+ + +
Sbjct: 214 RDLISW 219
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 220/412 (53%), Gaps = 57/412 (13%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV----TLS 82
++N L +LA ++ LY ++ +I S D FTY+++++ CV T
Sbjct: 145 VWNALFRALTLAGHGEEVLGLYWKMNRIGVES--------DRFTYTYVLKACVASECTAD 196
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
+ G ++HA +++ G+ SHVY+ T LV+MY G + +S +F+ +P RN+V+W+ MI
Sbjct: 197 HLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIA 256
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
K G+ A F EM M + +S P+ +T+++VL A
Sbjct: 257 CYAKNGKAFEALRTFREM-----------------MTETKDSS--PNSVTMVSVLQACAS 297
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
A+ +LIHGY +RG ++ + V + L+ Y +CG + ++F+ + +++VSW
Sbjct: 298 LAALEQGRLIHGYILRRGLDSI-LPVISALVTMYGRCGKLDVGQRVFD--RMHDRDVVSW 354
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
S+IS + +HG G+ A++ FE M G P VTF+SVL ACSH GL
Sbjct: 355 NSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWR 414
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY C+VD+LGRA RL++A K+ + +E V LLG+C HGNVE+
Sbjct: 415 DHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS-LLGSCRIHGNVELA 473
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
ER +R++ +E N G+YVL+ +I A + + +R++++++ R K PGR
Sbjct: 474 ERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 170/422 (40%), Gaps = 105/422 (24%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
KQ ++ + SP + TY LI C S + G ++H I G ++ T
Sbjct: 63 KQALRVLSQESSPSQQ-----TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATK 117
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+ MY LG + + K+FD+ +R + WN + L G E
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE----------------- 160
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN----CQLIHGYGEKRGFNAF 224
+L Y +MNR E T VL A + + + IH + +RG+N+
Sbjct: 161 -EVLGLYWKMNR---IGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSH 216
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ + L+D YA+ GC+ A +F + V +N+VSW+++I+ +A +G A+ F
Sbjct: 217 -VYIMTTLVDMYARFGCVDYASYVFNGMPV--RNVVSWSAMIACYAKNGKAFEALRTFRE 273
Query: 285 M--QKVGLKPNRVTFLSVLNACS------HGGLHYG---------------CLVDMLGRA 321
M + PN VT +SVL AC+ G L +G LV M GR
Sbjct: 274 MMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRC 333
Query: 322 GRLEQAEKI---------------------------ALGI----------PSEITDVVVR 344
G+L+ +++ A+ I P+ +T V V
Sbjct: 334 GKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSV- 392
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNG-----GDYVLMYNILAGVGRYVDAERLRR 399
LGACS G VE G+R+ M R +G Y M ++L R +A ++ +
Sbjct: 393 ---LGACSHEGLVEEGKRLFE---SMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 400 VM 401
M
Sbjct: 447 DM 448
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 229/447 (51%), Gaps = 48/447 (10%)
Query: 6 NVTTRIHSHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
++ R ++LL +N +L N+++ YS + +P K+F Y ++ Q S+
Sbjct: 50 SIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQ----SND 105
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
+ P D++T++FL+RTC S G +H + K GF+ +V + L+ MY + L
Sbjct: 106 VMSP--DNYTFNFLVRTCAQ-SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLS 162
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
++F+ + + +LV M++ K G++ +AR+LF+ MP R+ VSW ++ GY + +
Sbjct: 163 SCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQ 222
Query: 181 SNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
S A + +E+++++V+ A GA+ + H Y EK + +
Sbjct: 223 SREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQ-MTVNLGT 281
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+D Y KCG + ALK+F +++ KN+ +W++ I G AM+G G+ +E F M+ G+
Sbjct: 282 ALVDMYFKCGNVDRALKVFWEMN--EKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGI 339
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
PN +TF+SVL CS G HYGC+VD+ GRAGRLE+A
Sbjct: 340 APNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEAL 399
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+P + LL AC + N+E+GE +RK++E+E N G YV + NI A
Sbjct: 400 NFINTMPLK-PHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADT 458
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
G + +R+ M K PG S++
Sbjct: 459 GNWDRVSNVRQSMKAEGISKLPGCSVM 485
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ F++ +I + L N G QLHA K+G +S+V+V +A+V+ Y L + ++ K F
Sbjct: 391 NQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 450
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
++ E N+V++ +I G +K + A +LF +MP RNVVSW ++ GY++M + A
Sbjct: 451 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVN 510
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
T P+E T + A+ A+ + HG K FD+ + N L+ Y
Sbjct: 511 LFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVFIGNSLVSFY 569
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + +L +F ++ +KN+VSW ++I G+A HG G A+ FE+MQ GL+PN VT
Sbjct: 570 AKCGSMEESLLVFN--TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVT 627
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
L +L AC+H GL H+ C+VD+L R+GR ++AEK +
Sbjct: 628 LLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHEL 687
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + + + LLG C H N+E+GE RK+L ++ + YV++ N + GR+
Sbjct: 688 PF-VPGIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSV 746
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R+ M E+ PG S +
Sbjct: 747 SMIRKEMREKRMKGVPGSSWI 767
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 57/247 (23%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V Y + L D+ KLFDE+P ++V+ I ++ E A F M N+
Sbjct: 332 IVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNI--- 388
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+P++ + V+P+ + + + +H K G + ++ V
Sbjct: 389 ------------------KPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLES-NVFV 429
Query: 229 SNCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKNL 259
+ ++D YAK I A K FED + +N+
Sbjct: 430 GSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNV 489
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH------GGLHYGC 313
VSW ++ISG++ G + AV F M + G PN TF ++A ++ G +G
Sbjct: 490 VSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGS 549
Query: 314 LVDMLGR 320
V LG+
Sbjct: 550 AVKFLGK 556
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
++ Q IHG K G + + + +Y+ ++ A KLF++ V ++VS T+
Sbjct: 310 LKESQRIHGRAIKLGTTILEPDI----VCSYSASKALWDACKLFDE--VPNWDVVSATAT 363
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLE 325
I FA + + A+ F RM + +KPN+ +F +V+ + + L D+ +GR
Sbjct: 364 IGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSST-------ALQDL--NSGRQL 414
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
A I +G+ S + + F+ + + + N Y +
Sbjct: 415 HACAIKMGLESNVF------VGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGY 468
Query: 386 AGVGRYVDAERLRRVMDERNALKF 409
R+ DA L R M ERN + +
Sbjct: 469 LKKERFDDALALFRKMPERNVVSW 492
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ F++ +I + L N G QLHA K+G +S+V+V +A+V+ Y L + ++ K F
Sbjct: 110 NQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 169
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
++ E N+V++ +I G +K + A +LF +MP RNVVSW ++ GY++M + A
Sbjct: 170 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVN 229
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
T P+E T + A+ A+ + HG K FD+ + N L+ Y
Sbjct: 230 LFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVFIGNSLVSFY 288
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + +L +F ++ +KN+VSW ++I G+A HG G A+ FE+MQ GL+PN VT
Sbjct: 289 AKCGSMEESLLVFN--TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVT 346
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
L +L AC+H GL H+ C+VD+L R+GR ++AEK +
Sbjct: 347 LLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHEL 406
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + + + LLG C H N+E+GE RK+L ++ + YV++ N + GR+
Sbjct: 407 PF-VPGIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSV 465
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R+ M E+ PG S +
Sbjct: 466 SMIRKEMREKRMKGVPGSSWI 486
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V Y + L D+ KLFDE+P ++V+ I ++ E A F M N+
Sbjct: 51 IVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNI--- 107
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+P++ + V+P+ + + + +H K G + ++ V
Sbjct: 108 ------------------KPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLES-NVFV 148
Query: 229 SNCLIDTYAKCGCIFSALKLFED----------------ISVER-------------KNL 259
+ ++D YAK I A K FED + ER +N+
Sbjct: 149 GSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNV 208
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH------GGLHYGC 313
VSW ++ISG++ G + AV F M + G PN TF ++A ++ G +G
Sbjct: 209 VSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGS 268
Query: 314 LVDMLGR 320
V LG+
Sbjct: 269 AVKFLGK 275
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
++ Q IHG K G + + + +Y+ ++ A KLF++ V ++VS T+
Sbjct: 29 LKESQRIHGRAIKLGTTILEPDI----VCSYSASKALWDACKLFDE--VPNWDVVSATAT 82
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLE 325
I FA + + A+ F RM + +KPN+ +F +V+ + + L D+ +GR
Sbjct: 83 IGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSST-------ALQDL--NSGRQL 133
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
A I +G+ S + + F+ + + + N Y +
Sbjct: 134 HACAIKMGLESNVF------VGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGY 187
Query: 386 AGVGRYVDAERLRRVMDERNALKF 409
R+ DA L R M ERN + +
Sbjct: 188 LKKERFDDALALFRKMPERNVVSW 211
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 193/362 (53%), Gaps = 36/362 (9%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+H + G + V ALV+MY ++ + KLFD + R++V+W +++GL
Sbjct: 163 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLT 222
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
+ G ++ AR LF MP R+ VSWT ++DGY + R A + E T+++
Sbjct: 223 RLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVS 282
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q GA+ + + Y ++G D V N LID Y+KCG I AL +F+D+
Sbjct: 283 VITACAQLGALEMGEWVRVYMSRQGIK-MDAFVGNALIDMYSKCGSIERALDVFKDM--H 339
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++ +WT+II G A++G G+ A+E F RM V P+ VTF+ VL AC+H GL
Sbjct: 340 HRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGRE 399
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC++D+ GRAG++ +A +P + + LL AC
Sbjct: 400 FFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPM-TPNSTIWGTLLAACRV 458
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN E+GE VT ++L+M+ N Y L+ NI A R+ D RLR + E+ K PG S
Sbjct: 459 HGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCS 518
Query: 414 LV 415
L+
Sbjct: 519 LI 520
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 145/334 (43%), Gaps = 49/334 (14%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T+ L++ S +HA + K G + +V T+LV Y + G + L
Sbjct: 42 DAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALL 101
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
E V WN +I+G + F E C + M R+ A
Sbjct: 102 SERERDTPVVWNALISGHNRCRR-------FGEACC-----------SFVDMARAGAA-- 141
Query: 187 EPSEITILAVLPAIWQ-NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P+ +T ++VL A + G V +HG G D+RV N L+D YA+C + SA
Sbjct: 142 -PTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLP-DLRVENALVDMYAECADMESA 199
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
KLF+ + V +++VSWTS++SG G A + F RM P R T
Sbjct: 200 WKLFDGMQV--RSVVSWTSLLSGLTRLGRVDEARDLFGRM------PERDT--------- 242
Query: 306 HGGLHYGCLVDMLGRAGRLEQAEKI--ALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
+ + ++D +A R +A ++ + + D ++ AC+ G +EMGE V
Sbjct: 243 ---VSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWV 299
Query: 364 ----TRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+R+ ++M+ G + MY+ + R +D
Sbjct: 300 RVYMSRQGIKMDAFVGNALIDMYSKCGSIERALD 333
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 115/279 (41%), Gaps = 34/279 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+ + ++ Y A ++A +++++Q + D FT +I C L
Sbjct: 242 TVSWTAMIDGYVQAARFREALEMFREMQCSNVSA--------DEFTMVSVITACAQLGAL 293
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+G + +S+ G + +V AL++MY G ++ + +F ++ R+ TW +I GL
Sbjct: 294 EMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGL 353
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G E A +F M G S P E+T + VL A G
Sbjct: 354 AVNGYGEEAIEMFHRMI---------------------GVSETPDEVTFIGVLTACTHAG 392
Query: 205 AVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
V + + +N A ++ C+ID + + G I AL + + + N W
Sbjct: 393 LVDKGREFF-LSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMT-PNSTIWG 450
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
++++ +HG + ER+ + + P T ++L+
Sbjct: 451 TLLAACRVHGNSEIGELVTERLLQ--MDPENSTVYTLLS 487
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 194/356 (54%), Gaps = 43/356 (12%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
+ ++V +LV+MY + + ++FDE+P NLV+WN ++ G K +L AR +F
Sbjct: 91 LPADLHVANSLVHMYAACAMPDHAHRVFDEIPRPNLVSWNALLDGYAKCRDLPAARQVFA 150
Query: 159 EMPCRNVVSWTGILDG--------------------YTRMNRSNGASTEPSEITILAVLP 198
MP R+VVSW+ ++DG R G +++T+++VL
Sbjct: 151 RMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSVEDGGGGARANDVTMVSVLG 210
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A G + + +H +RGF +++++ L+D YAKCG I AL++F + VE +
Sbjct: 211 ACANLGDLERGRWVHRCLRERGF-PLNLKLATSLVDMYAKCGAIHEALEMFWAVPVESTD 269
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
++ W ++I G A+HGM +VE F+ MQ G+ P+ +T+L +L+AC HGGL
Sbjct: 270 VLIWNAVIGGLAVHGMATESVEIFQEMQCAGVAPDEITYLCLLSACVHGGLVDEAWKFFR 329
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HY CLVD+LGRAGRLE+ + +P + + V V L AC HG V
Sbjct: 330 SLEAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPS-VSVLGAFLNACHLHGWV 388
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
E+GE V R++++++ + G Y+ + NI A R+ +A++ R+VM++R K PG S
Sbjct: 389 ELGEVVGRQLVQLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEDRGVKKVPGFS 444
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 146/470 (31%), Positives = 222/470 (47%), Gaps = 90/470 (19%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+L+NT + YS S L+ ++++ S P D FTY LI+ C +
Sbjct: 88 TVLWNTYIKGYSENYSVSLTVSLFIRMKR------SDAVP--DKFTYPSLIKACSKVCGV 139
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL---------- 134
G H + G V+V T+L+++Y G + + K+FDE+ ERN+
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199
Query: 135 ---------------------VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
V+WN +I+G VK G+L AR +F+EMP RNVVS+T ++D
Sbjct: 200 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMID 259
Query: 174 GYTRMNRSNGA--------------------------STEPSEITILAVLPAIWQNGAVR 207
GY + A + +P E +++++ A Q G++
Sbjct: 260 GYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLE 319
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + Y K + V LID AKCG + A KLFE++ +++L+S+ S++
Sbjct: 320 LAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMP--KRDLISYCSMMQ 377
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G ++HG G AV F RM GL P+ V F +L ACS GL
Sbjct: 378 GLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIV 437
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY C+VD+LGRAGRL++A ++ +P E LLGAC H ++E+GE V
Sbjct: 438 PSPDHYACMVDLLGRAGRLKEAYELLKSMPVE-PHAGAWGALLGACKLHCDIELGEVVAD 496
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ E+E N G+YVL+ NI A +++D LR M ER K PG S +
Sbjct: 497 QLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
LR + + S L++ C T S Q+HA I + G ++ + + + SL
Sbjct: 19 LRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFLISQFLTLCNSLSNFSY 75
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
++ +F+ + + V WN I G + + SLF RM RS
Sbjct: 76 TTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLF------------------IRMKRS 117
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+ P + T +++ A + V+ HG + G D+ V LID Y KCG
Sbjct: 118 DAV---PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGE 173
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
I A K+F+++ +N+VSWT++I+G+A A + F+ M +
Sbjct: 174 ILCARKVFDEMG--ERNVVSWTAMIAGYASFSDLVEARKLFDEMPE 217
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 227/441 (51%), Gaps = 47/441 (10%)
Query: 12 HSHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
H +L N +L + N+++ + + P+K+F Y+++ S + L+P
Sbjct: 53 HKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRI----LSSGNDLKP-- 106
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T +FL++ C L G Q+H + + GF + +V T L+++Y LG L K+F
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+ +P + V M+T + G++ +AR LFE MP R+ ++W ++ GY ++ S A
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ + + +++VL A Q GA+ + H Y E+ +R++ L+D Y
Sbjct: 227 VFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIK-ITVRLATTLVDLY 285
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A+++F +E KN+ +W+S ++G AM+G G+ +E F M++ G+ PN VT
Sbjct: 286 AKCGDMEKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+SVL CS G HYGCLVD+ RAGRLE A I +
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + V LL A + N+E+G ++K+LE+E N G YVL+ NI A + +
Sbjct: 404 PMK-PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNV 462
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R+ M + K PG S++
Sbjct: 463 SHVRQSMKSKGVRKQPGCSVM 483
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/369 (34%), Positives = 198/369 (53%), Gaps = 37/369 (10%)
Query: 77 TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVT 136
C + G Q+H++ K G Q + YV AL++MY ++ ++F+ + ++ V+
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486
Query: 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------STE 187
WN I LV+ LE AR +F+ M R+VVSWT I+ Y + R + A E
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546
Query: 188 PSEITILAVLPAIWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
IL +L ++ G+ + Q IH K G ++ ++ V+N L+ Y KCGC S
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDS-ELIVANALMSMYFKCGCADSH- 604
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K+F+ S+E +++ +W + I+G A HG+G+ A++ +E M+ VG+ PN VTF+ +LNACSH
Sbjct: 605 KVFD--SMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSH 662
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VD+LGR G ++ AEK +P E D V+
Sbjct: 663 AGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIE-PDTVIW 721
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLGAC H N E+G R K+ E N G+YV++ NI + +G +V+ LR++M +R
Sbjct: 722 SALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQR 781
Query: 405 NALKFPGRS 413
K PG S
Sbjct: 782 GVSKEPGCS 790
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 131/295 (44%), Gaps = 72/295 (24%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ--SHVYVNTALVNMYVSLGFLKDSSK 124
+ +T+S +I LS+ G ++ A I+ G + TAL+ G + ++
Sbjct: 289 NEYTWSTMI---AALSH---GGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARI 342
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
LF+++P+ +V+WN MITG ++ G ++ A+ LF+ MP RN +SW G++ GY + RS A
Sbjct: 343 LFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEA 402
Query: 185 STEPSEITILAVLPAIWQN-------------------GAVRNCQLIHGYGEKRG--FNA 223
L +L A+ +N GA+ + +H K G FN+
Sbjct: 403 ---------LDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNS 453
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---------------------------- 255
+ V N LI Y KC + ++F + V+
Sbjct: 454 Y---VCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM 510
Query: 256 -RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+++VSWT+IIS +A G AVE F+ M KPN +L+ C GGL
Sbjct: 511 LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVC--GGL 563
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
++A + LG L+++ ++FD +P R+++ WN MI+ G LE AR LF+ + N
Sbjct: 35 AHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGN 94
Query: 165 VVSWTGILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
V + T +L GY R+ R A E + + A++ QNG + +
Sbjct: 95 VRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMA--------R 146
Query: 219 RGFNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA---MH 272
R F+A D+ N ++ Y + A LF+ + ++NLV+WT +ISG+ H
Sbjct: 147 RLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP--QRNLVTWTVMISGYVRIEQH 204
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
G G + F M G P++ F SVL+A +
Sbjct: 205 GKG---WDIFRMMHHEGASPDQSNFASVLSAVT 234
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 50/287 (17%)
Query: 63 RPLFDSFTYSFLIRTCVTLS-YPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLK 120
R +FD+ + +I +S Y N G A ++ +V T L++ Y LG +
Sbjct: 53 REVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVL 112
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT---- 176
D+ ++FD +PERN V WN M++ V+ G++ AR LF+ MP R+V SW ++ GY
Sbjct: 113 DARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQ 172
Query: 177 ---------------------------------------RMNRSNGASTEPSEITILAVL 197
RM GAS P + +VL
Sbjct: 173 MVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGAS--PDQSNFASVL 230
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A+ + +++ K GF + D+ + +++ Y + F D VER
Sbjct: 231 SAVTGLQDLGVLEVLRPLVLKTGFES-DVVIGTSILNVYTRDASALDIAIKFFDGMVER- 288
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
N +W+++I+ + G AA+ + R V P++ L+ L C
Sbjct: 289 NEYTWSTMIAALSHGGRIDAAIAVYGR-DPVKSIPSQTALLTGLARC 334
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 34/225 (15%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYV-SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
L ++ K GF+S V + T+++N+Y L + K FD + ERN TW+ MI L G
Sbjct: 245 LRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGG 304
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
++ A +++ P +++ S T +L G R R A +I V+ W
Sbjct: 305 RIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVS--W------- 355
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
N +I Y + G + A +LF+ + +N +SW +I+G
Sbjct: 356 ---------------------NAMITGYMQNGMVDEAKELFDRMPF--RNTISWAGMIAG 392
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
+A +G + A++ + + + G+ P+ + S ACSH G L G
Sbjct: 393 YAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG 437
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 219/420 (52%), Gaps = 43/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ Y ++A L+KQ+Q + ++P D F+ S ++ +CV+LS G
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQL------NGIKP--DCFSLSSMLSSCVSLSDSQKG 599
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH I + + + LV+MY G + + K++D+ +++++ NVM++ V
Sbjct: 600 RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNS 659
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
G A++LF++M RN W IL GY + E +T++ ++
Sbjct: 660 GRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV 719
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A+ + +H K+GF + + L+D Y+KCG I A +F++++ K
Sbjct: 720 NLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMN--GK 777
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N+VSW ++ISG++ HG K A+ +E M K G+ PN VTFL++L+ACSH GL
Sbjct: 778 NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIF 837
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+LGRAGRLE A++ +P E +V LLGAC H
Sbjct: 838 TSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIE-PEVSTWGALLGACRVHK 896
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++MG +++ E++ N G YV+M NI A GR+ + E +R++M + K PG S +
Sbjct: 897 DMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 956
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 25/241 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+FT++ +R C L + G Q+H+ + GF+ +V AL++MY + K+F
Sbjct: 275 DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF 334
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+ ERN VTWN +I+ ++G A LF RM S S
Sbjct: 335 DEMGERNQVTWNSIISAEAQFGHFNDALVLF------------------LRMQESGYKSN 376
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ +IL + G R +HG+ + N+ DI + + L+D Y+KCG + A
Sbjct: 377 RFNLGSILMASAGLADIGKGRE---LHGHLVRNLLNS-DIILGSALVDMYSKCGMVEEAH 432
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGLKPNRVTFLSVLNACS 305
++F S+ +N VS+ ++++G+ G + A+E + MQ + G++P++ TF ++L C+
Sbjct: 433 QVFR--SLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490
Query: 306 H 306
+
Sbjct: 491 N 491
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 140/327 (42%), Gaps = 59/327 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ D + LY +++ S D FT+ +I+ C+ +
Sbjct: 143 WNTMILAYARVDDYMEVLRLYGRMRGSGNFS--------DKFTFPSVIKACIAMEDMGGV 194
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QL + + K G +++V ALV+ Y G++ D+ DE+ ++VTWN +I G VK
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
E A +F+ M V P T + L GA+R
Sbjct: 255 LSWEEAWGIFDRMLKIGVC---------------------PDNFTFASALRVC---GALR 290
Query: 208 N---CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + +H GF D V N LID YAKC S LK+F+++ +N V+W S
Sbjct: 291 SRDGGKQVHSKLIACGFKG-DTFVGNALIDMYAKCDDEESCLKVFDEMG--ERNQVTWNS 347
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HGGLHY-- 311
IIS A G A+ F RMQ+ G K NR S+L A + HG L
Sbjct: 348 IISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL 407
Query: 312 --------GCLVDMLGRAGRLEQAEKI 330
LVDM + G +E+A ++
Sbjct: 408 LNSDIILGSALVDMYSKCGMVEEAHQV 434
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 105/465 (22%), Positives = 189/465 (40%), Gaps = 93/465 (20%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
+H + + L + + +N LL Y ++A LY +Q S ++P D FT+
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQ-----SEDGIQP--DQFTF 482
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
+ L+ C N G Q+HA + + ++ V T LV+MY G L + ++F+ + E
Sbjct: 483 TTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 542
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSNGA--- 184
RN +WN MI G + GE + A LF++M + S + +L ++ S
Sbjct: 543 RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL 602
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+ E I + ++ + G++ ++ K+ D+ ++N ++ +
Sbjct: 603 HNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKK-----DVILNNVMVSAFV 657
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
G A LF+ + E++N W SI++G+A G+ K + +F M + ++ + +T
Sbjct: 658 NSGRANDAKNLFDQM--EQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTM 715
Query: 298 LSVLNACS------HGG-LH--------YGC-------LVDMLGRAGRLEQAEKIALGI- 334
++++N CS HG LH C LVDM + G + +A + +
Sbjct: 716 VTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMN 775
Query: 335 ------------------------------------PSEITDVVVRRILLGACSFHGNVE 358
P+E+T + + L ACS G VE
Sbjct: 776 GKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI----LSACSHTGLVE 831
Query: 359 MGERVTRKVLEME--RGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
G R+ + E Y M ++L GR DA+ M
Sbjct: 832 EGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM 876
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 123/269 (45%), Gaps = 39/269 (14%)
Query: 39 DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98
DSPK I+T S + PL YS LI+ C+ + G +H + G
Sbjct: 54 DSPKPT--------SIHTKPASDVNPL----PYSSLIQDCIDSNSFQRGKSIHTQMISNG 101
Query: 99 FQSHVYVNTALVNMYVSLGFLKD---SSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
+ Y+ T ++ +Y G L D + KLF+E+PERNL WN MI L YAR
Sbjct: 102 YNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMI--------LAYAR- 152
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
V + +L Y RM S S + + +++ A+ G VR Q
Sbjct: 153 ---------VDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQ---SS 200
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
K G N ++ V L+D YA+ G + A+ ++I E ++V+W ++I+G+
Sbjct: 201 VVKAGLNC-NLFVGGALVDGYARFGWMDDAVTSLDEI--EGTSVVTWNAVIAGYVKILSW 257
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNAC 304
+ A F+RM K+G+ P+ TF S L C
Sbjct: 258 EEAWGIFDRMLKIGVCPDNFTFASALRVC 286
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 46/285 (16%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G +LH + + S + + +ALV+MY G ++++ ++F L ERN V++N ++ G V+
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G+ E A L+ +M + + +P + T +L
Sbjct: 456 EGKAEEALELYHDMQSEDGI--------------------QPDQFTFTTLLTLCANQRND 495
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH + + +I V L+ Y++CG + A ++F ++ +N SW S+I
Sbjct: 496 NQGRQIHAHLIRANITK-NIIVETELVHMYSECGRLNYAKEIFNRMA--ERNAYSWNSMI 552
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC---------------------S 305
G+ +G + A+ F++MQ G+KP+ + S+L++C
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 612
Query: 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
G+ LVDM + G ++ A K+ + DV++ +++ A
Sbjct: 613 EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKK--DVILNNVMVSA 655
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 214/441 (48%), Gaps = 99/441 (22%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK--------- 120
++S ++R+C LG H I K+GF+ + + T L++ Y +G LK
Sbjct: 12 SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGM 71
Query: 121 ----------------------DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
++ LFD + ERN +WN MIT K G++ AR +F+
Sbjct: 72 PRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFD 131
Query: 159 EMPCRNVVSWTGILDGYTR----------------------------------------- 177
P ++VVSW I+DGY +
Sbjct: 132 CNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAIS 191
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ + +P+E+T++++L A GA+ + IHGY + D+ + N LID Y
Sbjct: 192 MFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLK-IDVVLGNALIDMY 250
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCG + +A+ +F +S RKN+ W SII G M+G G+ A+ F M+K G+KP+ VT
Sbjct: 251 CKCGALEAAIDVFHGLS--RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 308
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ +L+ CSH GL HYGC+VD+LGRAG L++A ++ +
Sbjct: 309 FVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 368
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + +V+ LL AC H + ++GE+VT+++LE++ +GG+YV + N+ A + R+ D
Sbjct: 369 PMKPNSMVLGS-LLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDV 427
Query: 395 ERLRRVMDERNALKFPGRSLV 415
R++M +R K PG S +
Sbjct: 428 NTCRKLMIKRGVHKTPGCSSI 448
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 192/339 (56%), Gaps = 36/339 (10%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
++N Y +G + ++ +LFDE+PERNLV+WN M++G VK G +E A LF EMPCR+VVSW
Sbjct: 103 IINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSW 162
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
+L Y + + N A +P+E T++++L A GA+ +H Y
Sbjct: 163 NSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 222
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
I V L+D YAKCG I A ++F ++E K++++W +II+G A+HG K A
Sbjct: 223 NRIEVNSI-VGTALVDMYAKCGKISLATQVFN--AMESKDVLAWNTIIAGMAIHGHVKEA 279
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+ F+ M++ ++PN +TF+++L+ACSH G+ HY C++D
Sbjct: 280 QQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVID 339
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+L RAG LE+A ++ +P E + LLG C HGN E+GE V ++++ ++ + G
Sbjct: 340 LLARAGLLEEAMELIGTMPMEPNPSAL-GALLGGCRIHGNFELGEMVGKRLINLQPCHSG 398
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
Y+L+ NI A ++ DA ++R +M K PG S++
Sbjct: 399 RYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 437
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 170/358 (47%), Gaps = 62/358 (17%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
TY F+I+ C S G +H + K GF+ Y+ +L+++Y + L + +LF
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+R++V+WN MI G VK GE+ + R +F+ M CR+V+SW I++GY + + + A
Sbjct: 61 CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEA---- 116
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR--VS-NCLIDTYAKCGCIFSA 245
KR F+ R VS N ++ + KCG + A
Sbjct: 117 -----------------------------KRLFDEMPERNLVSWNSMLSGFVKCGNVEEA 147
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
LF ++ +++VSW S+++ +A G A+ F++M+ VG+KP T +S+L+AC+
Sbjct: 148 FGLFSEMPC--RDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACA 205
Query: 306 H-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
H G L G LVDM + G++ A ++ + S+ DV+
Sbjct: 206 HLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK--DVLAW 263
Query: 345 RILLGACSFHGNVEMGERVTRKVLEME-RGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
++ + HG+V+ +++ +++ E N +V M + + G + ++L M
Sbjct: 264 NTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 321
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 222/429 (51%), Gaps = 54/429 (12%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
++NTL+ + + + K A ++ ++ Q S L+P D++T ++++ C T +
Sbjct: 74 IYNTLIKAFLVNNKFKSALQVFVKMLQ------SELKP--DNYTIPYVLKACGTFHDCSF 125
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G +H SK+G +YV +L+ MY G + + +FDE+P N+V+W+VMI+G K
Sbjct: 126 GKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAK 185
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE--------------PSEIT 192
G+++ AR F+E P ++ W ++ GY + N E P E
Sbjct: 186 VGDVDSARLFFDEAPEKDKGIWGAMISGYVQ----NSCFKESLYLFRLMQLTDIVPDESI 241
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+++L A GA+ IH + + +R+S L+D YAKCG + A +LF+
Sbjct: 242 FVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFD-- 299
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
S+ +++V W ++ISG AMHG GK A++ F M+KVG+KP+ +TF++V ACS+ G+
Sbjct: 300 SMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYE 359
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT---DVVVRRIL 347
HYGCLVD+L RAG E+A + I + + + R
Sbjct: 360 GLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAF 419
Query: 348 LGACSFHGNVEMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
L AC HG ++ E KVL+++ + G YVL+ N+ A G++ DA R+R +M +
Sbjct: 420 LSACCNHGETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGT 479
Query: 407 LKFPGRSLV 415
K PG S V
Sbjct: 480 NKAPGCSSV 488
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 232/435 (53%), Gaps = 47/435 (10%)
Query: 16 LTTNSLLH-HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL 74
L +SL H + L+N+L++ Y+ +AF L+ Q+ S + P D FT S L
Sbjct: 79 LVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQM------CSSDVLP--DDFTLSTL 130
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ L G +H ++GF S V ++++MY G ++S K+FDE+ RN
Sbjct: 131 SKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNS 190
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------- 184
+WNV+I G G L R +F+ M CRNV SWT +++GY S+ A
Sbjct: 191 GSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVI 250
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
EP+ +++++VLPA + + + IHG+ ++ N ++ + N LID Y+KCG +
Sbjct: 251 DGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNN-EVSLCNALIDMYSKCGSLD 309
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
SA ++FED S+ K+ +SW+S+ISG+ +HG G+ A+ +++M + G++P+ +T + +L+A
Sbjct: 310 SARRVFEDDSL-CKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSA 368
Query: 304 CSHGGL-------------HYG---------CLVDMLGRAGRLEQAEKIALGIPSEITDV 341
CS GL YG C+VDMLGRAG+L+ A +P E
Sbjct: 369 CSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPS 428
Query: 342 VVRRILLGACS-FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V ++ +CS HG++EM E R ++++E N +YV + N+ A R+ +RR+
Sbjct: 429 VWGALV--SCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRM 486
Query: 401 MDERNALKFPGRSLV 415
M ++ K PG S +
Sbjct: 487 MKDKRLRKVPGCSWI 501
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 143/363 (39%), Gaps = 76/363 (20%)
Query: 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
VT L Q H+ I +G + + T L+ Y S +FD L +N+ WN
Sbjct: 34 VTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWN 93
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP 198
+I G K A LF +M +V+ P + T+ +
Sbjct: 94 SLINGYAKNRLYNEAFQLFNQMCSSDVL---------------------PDDFTLSTLSK 132
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-- 256
+ GA+ + + IHG + GF + D V+N ++ Y KCG + K+F+++++
Sbjct: 133 VSSELGALFSGKSIHGKSIRIGFVS-DTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSG 191
Query: 257 ---------------------------KNLVSWTSIISGFAMHGMGKAAVENFERMQKV- 288
+N+ SWT++I+G+ +G A+ F MQ +
Sbjct: 192 SWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVID 251
Query: 289 GLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQA 327
G++PNRV+ +SVL ACS GL G L+DM + G L+ A
Sbjct: 252 GIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSA 311
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
++ S D + ++ HG + + K+L+ G D + IL+
Sbjct: 312 RRV-FEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQA--GIRPDMITTVGILSA 368
Query: 388 VGR 390
R
Sbjct: 369 CSR 371
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 200/370 (54%), Gaps = 46/370 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T+ L++ C + G Q H V K G H YV L+NMY G ++ + +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D + +V++N MIT V+ A LF EM + +
Sbjct: 197 DRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGL--------------------- 235
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P+ +T+++VL A GA+ + IH Y K ++ ++V+ LID YAKCG + A+
Sbjct: 236 KPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAI 294
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+D+ E ++ +W+ ++ +A HG G+ A+ FE M+K G+KP+ VTFL VL ACSH
Sbjct: 295 GVFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSH 352
Query: 307 GGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G+ HYGC+ D+L R+G+LE+A K +P + T ++ R
Sbjct: 353 SGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWR 411
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL AC+ HG+V+MG+RV ++LE++ +GGDYV+ N+ A GR+ + +R++M E+
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471
Query: 406 ALKFPGRSLV 415
+K PG S +
Sbjct: 472 VVKVPGCSSI 481
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 148/354 (41%), Gaps = 60/354 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + P +A +L++++Q L+P S T ++ C L LG
Sbjct: 207 YNAMITASVRSSLPGEALVLFREMQA------KGLKPT--SVTLISVLSACALLGALELG 258
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I K+ S V VNTAL++MY G L+D+ +F ++ R+ W+VM+
Sbjct: 259 RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANH 318
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A S+FEEM + + +P ++T L VL A +G V
Sbjct: 319 GYGREAISMFEEMKKQGM---------------------KPDDVTFLGVLYACSHSGMVS 357
Query: 208 NCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + + R + I+ C+ D A+ G + A K +++ + + + W +++
Sbjct: 358 --EGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPI-KPTAILWRTLL 414
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326
S A HG FER+ ++ SHGG Y ++ GR E+
Sbjct: 415 SACAGHGDVDMGKRVFERILELDD--------------SHGG-DYVIFSNLCANTGRWEE 459
Query: 327 --------AEKIALGIP---SEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+EK + +P S D +V G S H + + R+ +V+E
Sbjct: 460 MNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGS-HPHSQEARRMVDEVIE 512
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 105/281 (37%), Gaps = 73/281 (25%)
Query: 88 TQLHAVISKVG--FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
QLHAV K G Q+H T L+ + G E P
Sbjct: 45 AQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQG---------AEAP--------------- 80
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGIL------------------DGYTRMNRSNGASTE 187
L YAR +F+ +P V W L + RM A
Sbjct: 81 --AHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVA--- 135
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T +++L A A + HG K G + V+ LI+ YA+CG + +A
Sbjct: 136 PDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEY-VAPTLINMYAECGDVRAARV 194
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-H 306
+F+ + E +VS+ ++I+ + A+ F MQ GLKP VT +SVL+AC+
Sbjct: 195 MFDRMDGE--CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALL 252
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQA 327
G L G L+DM + G LE A
Sbjct: 253 GALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA 293
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 222/428 (51%), Gaps = 58/428 (13%)
Query: 13 SHLLTTNSLLHHTLLFNTLLHFYSLA-DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
SH +T + + LFNTL+ YS DS +FL Y+ + + + +P + FT+
Sbjct: 77 SHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLR---YGVTP-----NKFTF 128
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF--LKDSSKLFDEL 129
F+++ C + LG +H + K GF+ V+V L++MY LG + + K+FD+
Sbjct: 129 PFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDS 188
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P+ + VTW+ MI G V+ G A LF EM V P
Sbjct: 189 PKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVC---------------------PD 227
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
EIT+++VL A GA+ + + Y EK+ + + N LID +AKCG + A+KLF
Sbjct: 228 EITMVSVLSACADLGALELGKWVESYVEKKNIPK-SVELCNALIDMFAKCGNVDKAIKLF 286
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ + + +VSWTS+I+G AMHG G AV F+ M + G+ P+ V F+ VL+ACSH GL
Sbjct: 287 RQM--DSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGL 344
Query: 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
HYGC+VD+L R G +++A + +P E ++ R I+
Sbjct: 345 VDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTII 404
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
AC G +++GE +++++++ E + +YVL+ NI A + ++ ++R +MD R
Sbjct: 405 T-ACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMK 463
Query: 408 KFPGRSLV 415
K PG +++
Sbjct: 464 KVPGSTMI 471
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 191/338 (56%), Gaps = 38/338 (11%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY + + +LFDE+P N V+WN ++ G K +L AR +F MP R+VVSW+ +
Sbjct: 1 MYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAM 60
Query: 172 LDGYTRMNRSNGA---------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
+DG + A +++T+++VL A G + + +H Y
Sbjct: 61 IDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYL 120
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
E+ GF +IR++ L+D YAKCG I AL++F+ + VE +++ W ++I G A+HGM +
Sbjct: 121 EEHGF-PLNIRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSR 179
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLV 315
+++ F++M+ G+ P+ +T+LS+L+AC HGGL HY CLV
Sbjct: 180 ESLQMFQKMEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLV 239
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
D+LGRAGRLE+A + +P + + V V LL AC HG VE+GE V R+++ ++ +
Sbjct: 240 DVLGRAGRLEEAYGVVKSMPMKPS-VSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHD 298
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
G Y+ + NI A R+ +A++ R+VM+ER K PG S
Sbjct: 299 GRYIGLSNIYAVARRWQEAKKARKVMEERGVKKVPGFS 336
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 24/176 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ T ++ C L G ++H + + GF ++ + T+LV+MY G + ++ ++F
Sbjct: 93 NDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVF 152
Query: 127 DELPERN--LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+P N ++ WN +I GL G + +F++M VV
Sbjct: 153 QAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVV------------------ 194
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P EIT L++L A G V E +G + CL+D + G
Sbjct: 195 ---PDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPH-VEHYACLVDVLGRAG 246
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 200/370 (54%), Gaps = 46/370 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T+ L++ C + G Q H V K G H YV L+NMY G ++ + +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D + +V++N MIT V+ A LF EM + +
Sbjct: 197 DRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGL--------------------- 235
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P+ +T+++VL A GA+ + IH Y K ++ ++V+ LID YAKCG + A+
Sbjct: 236 KPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAI 294
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+D+ E ++ +W+ ++ +A HG G+ A+ FE M+K G+KP+ VTFL VL ACSH
Sbjct: 295 GVFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSH 352
Query: 307 GGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G+ HYGC+ D+L R+G+LE+A K +P + T ++ R
Sbjct: 353 SGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWR 411
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL AC+ HG+V+MG+RV ++LE++ +GGDYV+ N+ A GR+ + +R++M E+
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471
Query: 406 ALKFPGRSLV 415
+K PG S +
Sbjct: 472 VVKVPGCSSI 481
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 148/354 (41%), Gaps = 60/354 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + P +A +L++++Q L+P S T ++ C L LG
Sbjct: 207 YNAMITASVRSSLPGEALVLFREMQA------KGLKPT--SVTLISVLSACALLGALELG 258
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I K+ S V VNTAL++MY G L+D+ +F ++ R+ W+VM+
Sbjct: 259 RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANH 318
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A S+FEEM + + +P ++T L VL A +G V
Sbjct: 319 GYGREAISMFEEMKKQGM---------------------KPDDVTFLGVLYACSHSGMVS 357
Query: 208 NCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + + R + I+ C+ D A+ G + A K +++ + + + W +++
Sbjct: 358 --EGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPI-KPTAILWRTLL 414
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326
S A HG FER+ ++ SHGG Y ++ GR E+
Sbjct: 415 SACAGHGDVDMGKRVFERILELDD--------------SHGG-DYVIFSNLCANTGRWEE 459
Query: 327 --------AEKIALGIP---SEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+EK + +P S D +V G S H + + R+ +V+E
Sbjct: 460 MNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGS-HPHSQEARRMVDEVIE 512
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 116/309 (37%), Gaps = 75/309 (24%)
Query: 88 TQLHAVISKVG--FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
QLHAV K G Q+H T L+ + G E P
Sbjct: 45 AQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGA---------EAP--------------- 80
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGIL------------------DGYTRMNRSNGASTE 187
L YAR +F+ +P V W L + RM A
Sbjct: 81 --AHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVA--- 135
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T +++L A A + HG K G + V+ LI+ YA+CG + +A
Sbjct: 136 PDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEY-VAPTLINMYAECGDVRAARV 194
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-H 306
+F+ + E +VS+ ++I+ + A+ F MQ GLKP VT +SVL+AC+
Sbjct: 195 MFDRMDGE--CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALL 252
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G L G L+DM + G LE A I + E D +
Sbjct: 253 GALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA--IGVFQDMESRDKQAWSV 310
Query: 347 LLGACSFHG 355
++ A + HG
Sbjct: 311 MMVAYANHG 319
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 194/378 (51%), Gaps = 36/378 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
LFD FT L+ +C +L P L Q+H +G S++ + AL++ Y G S
Sbjct: 145 LFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFS 204
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F +PER++V+W M+ + LE A LF +M +N VSWT ++ G+ + R + A
Sbjct: 205 IFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEA 264
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF--DIRVSNCL 232
PS T +VL A + + IHG+ + + +I + N L
Sbjct: 265 LHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNAL 324
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID Y KCG + SA LF+ + K++VSW S+I+GFA +G G+ ++ FERM + ++P
Sbjct: 325 IDMYCKCGQMRSATTLFK--GMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRP 382
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
N VTFL +L+AC H GL HY ++D+LGR RLE+A +
Sbjct: 383 NHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGL 442
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
P V + LLGAC HGN+++ R + ++E GN YV++YNI A R
Sbjct: 443 IKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASR 502
Query: 391 YVDAERLRRVMDERNALK 408
+ +A ++RR+M ER K
Sbjct: 503 WDEARQVRRLMMERGLRK 520
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 165/366 (45%), Gaps = 68/366 (18%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
YS LI C+T + LG LH+ K ++ L++ Y ++ + K+F LP
Sbjct: 17 YSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLP 76
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT------------RM 178
+N +WN++I+ + G A +L ++MP N+VS+ ++ G +
Sbjct: 77 VKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKT 136
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
++ E T+++++ + GA + +HG G N+ +I + N LID Y K
Sbjct: 137 MLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNS-NIIIGNALIDAYGK 195
Query: 239 CG------CIFSALKLFEDIS-----------------------VERKNLVSWTSIISGF 269
CG IFS + + +S ++ KN VSWT++I+GF
Sbjct: 196 CGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGF 255
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HGG------LHYG 312
A +G G A+ FE+M++ G+ P+ TF SVL+AC+ HG + Y
Sbjct: 256 AQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYF 315
Query: 313 C-------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
C L+DM + G++ A + G+ + D+V L+ + +G+ E V
Sbjct: 316 CNIFILNALIDMYCKCGQMRSATTLFKGMHEK--DIVSWNSLITGFAQNGHGEESLAVFE 373
Query: 366 KVLEME 371
+++E +
Sbjct: 374 RMIEAD 379
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 126/353 (35%), Positives = 196/353 (55%), Gaps = 45/353 (12%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
Q V + +V+ Y+ LG + + +LFD +P+ ++++WN +++G GE+E +FEE
Sbjct: 53 QCDVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEE 112
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTE---------------PSEITILAVLPAIWQNG 204
MP RNV SW G++ GY R NG E P++ T++AVL A + G
Sbjct: 113 MPARNVYSWNGLIGGYVR----NGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLG 168
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + +H Y + G+ ++ V N LID YAKCG I AL +F+ + V K++++W +
Sbjct: 169 DLEIGKWVHVYADSIGYKG-NLFVGNALIDMYAKCGVIEKALDVFDGLDV--KDIITWNT 225
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
II+ AMH A+ FE M++ G +P+ VTF+ +L+AC+H GL
Sbjct: 226 IINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDY 285
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+VD+LGRAG + QA I +P E DVV+ LLGAC + NVEM E
Sbjct: 286 LIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPME-PDVVIWAALLGACRXYKNVEMAEL 344
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++++E+E N G++V++ NI +GR D RL+ M + K PG S++
Sbjct: 345 ALQRLIELEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVI 397
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 56/259 (21%)
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
F+ D+ K+F E+ ++N+ W ++ V ++ AR LF+ P +VV W I+ GY
Sbjct: 9 FVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIE 68
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+ A + +P +C D+ N ++ YA
Sbjct: 69 LGDMVAAR------ELFDRMP---------DC---------------DVMSWNTVLSGYA 98
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVT 296
G + +K+FE++ +N+ SW +I G+ +G+ K A+E F+RM G + PN T
Sbjct: 99 NNGEVELFVKVFEEMPA--RNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYT 156
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
++VL+ACS G L G L+DM + G +E+A + G+
Sbjct: 157 VVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGL- 215
Query: 336 SEITDVVVRRILLGACSFH 354
++ D++ ++ + + H
Sbjct: 216 -DVKDIITWNTIINSLAMH 233
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 24/227 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ +T ++ C L +G +H +G++ +++V AL++MY G ++ + +F
Sbjct: 153 NDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVF 212
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D L ++++TWN +I L A SLFE M A
Sbjct: 213 DGLDVKDIITWNTIINSLAMHXHAADALSLFEGM---------------------KRAGE 251
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P +T + +L A G VRN L I C++D + G I A+
Sbjct: 252 RPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAV 311
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ + +E ++V W +++ + + A +R+ + L+PN
Sbjct: 312 DIVRKMPME-PDVVIWAALLGACRXYKNVEMAELALQRL--IELEPN 355
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 200/370 (54%), Gaps = 46/370 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T+ L++ C + G Q H V K G H YV L+NMY G ++ + +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D + +V++N MIT V+ A LF EM + +
Sbjct: 197 DRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGL--------------------- 235
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P+ +T+++VL A GA+ + IH Y K ++ ++V+ LID YAKCG + A+
Sbjct: 236 KPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAI 294
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+D+ E ++ +W+ ++ +A HG G+ A+ FE M+K G+KP+ VTFL VL ACSH
Sbjct: 295 GVFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSH 352
Query: 307 GGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G+ HYGC+ D+L R+G+LE+A K +P + T ++ R
Sbjct: 353 SGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWR 411
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL AC+ HG+V+MG+RV ++LE++ +GGDYV+ N+ A GR+ + +R++M E+
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471
Query: 406 ALKFPGRSLV 415
+K PG S +
Sbjct: 472 VVKVPGCSSI 481
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 148/354 (41%), Gaps = 60/354 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + P +A +L++++Q L+P S T ++ C L LG
Sbjct: 207 YNAMITASVRSSLPGEALVLFREMQA------KGLKPT--SVTLISVLSACALLGALELG 258
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I K+ S V VNTAL++MY G L+D+ +F ++ R+ W+VM+
Sbjct: 259 RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANH 318
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A S+FEEM + + +P ++T L VL A +G V
Sbjct: 319 GYGREAISMFEEMKKQGM---------------------KPDDVTFLGVLYACSHSGMVS 357
Query: 208 NCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + + R + I+ C+ D A+ G + A K +++ + + + W +++
Sbjct: 358 --EGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPI-KPTAILWRTLL 414
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326
S A HG FER+ ++ SHGG Y ++ GR E+
Sbjct: 415 SACAGHGDVDMGKRVFERILELDD--------------SHGG-DYVIFSNLCANTGRWEE 459
Query: 327 --------AEKIALGIP---SEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+EK + +P S D +V G S H + + R+ +V+E
Sbjct: 460 MNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGS-HPHSQEARRMVDEVIE 512
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 108/278 (38%), Gaps = 67/278 (24%)
Query: 88 TQLHAVISKVG--FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
QLHAV K G Q+H T L+ + G E P
Sbjct: 45 AQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGA---------EAP--------------- 80
Query: 146 KWGELEYARSLFEEMPCRNVVSW-TGILDGYTRMNRSNGASTE--------------PSE 190
L YAR +F+ +P V W +L GY R G + E P
Sbjct: 81 --AHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDT 138
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T +++L A A + HG K G + V+ LI+ YA+CG + +A +F+
Sbjct: 139 YTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEY-VAPTLINMYAECGDVRAARVMFD 197
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGGL 309
+ E +VS+ ++I+ + A+ F MQ GLKP VT +SVL+AC+ G L
Sbjct: 198 RMDGE--CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGAL 255
Query: 310 HYG--------------------CLVDMLGRAGRLEQA 327
G L+DM + G LE A
Sbjct: 256 ELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA 293
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 217/442 (49%), Gaps = 45/442 (10%)
Query: 9 TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQ--IYTHSHSPLRPLF 66
RI + LLT+ L L + L+ S + P A LY L + + H+ L L
Sbjct: 21 VRIQAALLTSGQLPRSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHT-LPSLL 79
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDSSKL 125
S S + L+ L HAV K+G V V+ AL+ ++ LG L D L
Sbjct: 80 KSMALSPAVPGAAVLA---LTVHTHAV--KLGLDRFVLVSNALIRVHAGFLGSLADGLLL 134
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------ 179
+ T+N +IT + G L AR+LF+EMP RN VSW+ +++GY +
Sbjct: 135 LRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREAL 194
Query: 180 ----RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
R P + ++ VL A Q+GA+ + +HGY + G ++ L+D
Sbjct: 195 RIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIK-INLFFGTALVDM 253
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCG + A+ +FE ++ KN+++WT++I G AMHG G AV F +M+ G++P+ +
Sbjct: 254 YSKCGEVQLAMDVFE--RMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDI 311
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
F+ VL AC+H GL HYGC+VD+L R G L +A+++
Sbjct: 312 AFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQK 371
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P E D ++ L+ C FH NVE E V + + +E G YVL+ NI A GR+
Sbjct: 372 MPME-PDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHAS 430
Query: 394 AERLRRVMDERNALKFPGRSLV 415
A +R +M E+ K PG S V
Sbjct: 431 AREIRHLMREKGVDKTPGCSTV 452
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 34/372 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C S G QLH VI K GF +H +V LV+ Y G + + F + +
Sbjct: 283 LMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSH 342
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
+WN ++ L++ G + AR LF++MP R+ VSW+ ++ GY + RS+ A
Sbjct: 343 TASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLN 402
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
S EP+E+T+ + L AI +G + + IH Y R D +S+ LID YAKCG I
Sbjct: 403 TSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTD-NLSSGLIDMYAKCGSIA 461
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A++ F ++ + ++ W ++I A+HG +++ F ++Q+ +KPN +TF+ VL+A
Sbjct: 462 DAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSA 521
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C H G HYGC+VD+LGRAG LE+AE++ +P + DV
Sbjct: 522 CCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK-PDV 580
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ +L A GNV +GER ++ ++++ +G + + NI A G +++ +R+ +
Sbjct: 581 VIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVVRKEL 640
Query: 402 DERNALKFPGRS 413
+ N + GRS
Sbjct: 641 QDANLERLTGRS 652
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 43/266 (16%)
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
P +H + V V T LV+ Y + L + LFD + RN VTWNVM+ G
Sbjct: 160 PATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNG 219
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEIT 192
VK ++ A +F +P R+ VSW ++DGY + + A E+
Sbjct: 220 YVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA----------------------FDIRVS- 229
++ ++ A + AV Q +H K GF+A R+S
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSD 339
Query: 230 -------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
N L+ + G I A +LF+D+ ++ VSW+++ISG+ G A++ F
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDDM--PERDTVSWSTMISGYVQTGRSDMALKLF 397
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGG 308
M ++PN VT S L+A + G
Sbjct: 398 YSMLNTSIEPNEVTLASALSAIADSG 423
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 31/258 (12%)
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSL-GF 118
PL P FL+ + + G QLHA+ +K G S+V+V ++++ Y L
Sbjct: 7 PLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSS 58
Query: 119 LKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDG 174
L + +LFDE P R+ N ++ L + G L+ A+ L EEMP R+ VS+T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTS 118
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ R + A + P+E T+ + A + GA +IHG+ +R + F
Sbjct: 119 FARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGF 178
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
I +N L+ YA + SA LF+ ++ +N V+W +++G+ M A E F R
Sbjct: 179 VIVATN-LVHAYAGVLELCSARALFDGMTY--RNTVTWNVMLNGYVKAKMIDMAAEVFWR 235
Query: 285 MQKVGLKPNRVTFLSVLN 302
+ + + V++L++++
Sbjct: 236 IP----ERDEVSWLTLID 249
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 34/372 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C S G QLH VI K GF +H +V LV+ Y G + + F + +
Sbjct: 283 LMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSH 342
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
+WN ++ L++ G + AR LF++MP R+ VSW+ ++ GY + RS+ A
Sbjct: 343 TASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLN 402
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
S EP+E+T+ + L AI +G + + IH Y R D +S+ LID YAKCG I
Sbjct: 403 TSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTD-NLSSGLIDMYAKCGSIA 461
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A++ F ++ + ++ W ++I A+HG +++ F ++Q+ +KPN +TF+ VL+A
Sbjct: 462 DAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSA 521
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C H G HYGC+VD+LGRAG LE+AE++ +P + DV
Sbjct: 522 CCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK-PDV 580
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ +L A GNV +GER ++ ++++ +G + + NI A G +++ +R+ +
Sbjct: 581 VIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVVRKEL 640
Query: 402 DERNALKFPGRS 413
+ N + GRS
Sbjct: 641 QDANLERLTGRS 652
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 43/266 (16%)
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
P +H + V V T LV+ Y + L + LFD + RN VTWNVM+ G
Sbjct: 160 PATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNG 219
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEIT 192
VK ++ A +F +P R+ VSW ++DGY + + A E+
Sbjct: 220 YVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA----------------------FDIRVS- 229
++ ++ A + AV Q +H K GF+A R+S
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSD 339
Query: 230 -------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
N L+ + G I A +LF+D+ ++ VSW+++ISG+ G A++ F
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDDM--PERDTVSWSTMISGYVQTGRSDMALKLF 397
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGG 308
M ++PN VT S L+A + G
Sbjct: 398 YSMLNTSIEPNEVTLASALSAIADSG 423
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 31/258 (12%)
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSL-GF 118
PL P FL+ + + G QLHA+ +K G S+V+V ++++ Y L
Sbjct: 7 PLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSS 58
Query: 119 LKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDG 174
L + +LFDE P R+ N ++ L + G L+ A+ L EEMP R+ VS+T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTS 118
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ R + A + P+E T+ + A + GA +IHG+ +R + F
Sbjct: 119 FARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGF 178
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
I +N L+ YA + SA LF+ ++ +N V+W +++G+ M A E F R
Sbjct: 179 VIVATN-LVHAYAGVLELCSARALFDGMTY--RNTVTWNVMLNGYVKAKMIDMAAEVFWR 235
Query: 285 MQKVGLKPNRVTFLSVLN 302
+ + + V++L++++
Sbjct: 236 IP----ERDEVSWLTLID 249
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 196/351 (55%), Gaps = 47/351 (13%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G ++H++ + GF+S V+V LV+MY + G + + KLF+ + ERNLVTWN +I G
Sbjct: 14 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 73
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G A +LF EM R V EP T++++L A + GA+
Sbjct: 74 NGRPNEALTLFREMGLRGV---------------------EPDGFTMVSLLSACAELGAL 112
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ H Y K G + ++ N L+D YAKCG I A K+F+++ E K++VSWTS+I
Sbjct: 113 ALGRRAHVYMVKVGLDG-NLHAGNALLDLYAKCGSIRQAHKVFDEM--EEKSVVSWTSLI 169
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
G A++G GK A+E F+ +++ GL P+ +TF+ VL ACSH G+
Sbjct: 170 VGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGI 229
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+VD+LGRAG ++QA + +P + + VV R LLGAC+ HG++ +GE
Sbjct: 230 VPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQ-PNAVVWRTLLGACTIHGHLALGEVAR 288
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++L++E + GDYVL+ N+ A R+ D ++RR M K PG SLV
Sbjct: 289 AQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLV 339
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 56/279 (20%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-DSFTYSFLIRTCVTLSYP 84
+ +N++++ Y+L P +A L++++ LR + D FT L+ C L
Sbjct: 62 VTWNSVINGYALNGRPNEALTLFREMG---------LRGVEPDGFTMVSLLSACAELGAL 112
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG + H + KVG +++ AL+++Y G ++ + K+FDE+ E+++V+W +I GL
Sbjct: 113 ALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGL 172
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G + A LF+E+ + ++ PSEIT + VL A G
Sbjct: 173 AVNGFGKEALELFKELERKGLM---------------------PSEITFVGVLYACSHCG 211
Query: 205 AVRNCQLIHGYGEKRGFNAF-----------DIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
V GF+ F I C++D + G + A + +++
Sbjct: 212 MV-----------DEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP 260
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
++ N V W +++ +H G A+ R Q + L+P
Sbjct: 261 MQ-PNAVVWRTLLGACTIH--GHLALGEVARAQLLQLEP 296
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 211/395 (53%), Gaps = 39/395 (9%)
Query: 54 IYTHS-HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
+++H+ S RP D F + L +G+ +H +I + G S + V ALV+M
Sbjct: 106 VFSHAIASGHRP--DGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDM 163
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y G + + +FD + ++ VTW M+ G +K ++ A S F +MP ++ VSWT ++
Sbjct: 164 YCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALI 223
Query: 173 DGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
G+ + + A P+ ITI+ VL A GA+ + IHGYG K
Sbjct: 224 TGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNAT 283
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+I V+N L+D YAK G I SA +FE+ V+ K+ +WT++IS F + G G+ AVE F
Sbjct: 284 T-NIIVTNALMDMYAKSGSIASAFSVFEE--VQMKDAFTWTTMISSFTVQGNGRKAVELF 340
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
M + G+ PN VTF+SVL+ACSH GL HYGC+VD+LGR
Sbjct: 341 WDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGR 400
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
G LE+AE + + E D+V+ R LL AC HGN + E +++++ E G+ G YVL
Sbjct: 401 GGLLEEAEALIDHMDVE-PDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVL 459
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++N+ A R+ +A +R+ M R K PG S +
Sbjct: 460 LWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWI 494
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 51/233 (21%)
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
++ + Y G D+ +LFDE+P +++++ +++ +K A S+F
Sbjct: 55 ISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH----- 109
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
I G+ P + L A G R ++HG + G ++
Sbjct: 110 -----AIASGH-----------RPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDS- 152
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVER---------------------------- 256
++ V N L+D Y +CG A +F+ + V+
Sbjct: 153 ELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMP 212
Query: 257 -KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
K+ VSWT++I+G A+E F +M G +PN +T + VL+AC+ G
Sbjct: 213 MKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIG 265
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 193/339 (56%), Gaps = 36/339 (10%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+++ YV G + + LF+++PERN+V+W+ M++G K G++E AR LF++MP +N+V+W
Sbjct: 226 ILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTW 285
Query: 169 TGILDGY----------TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T I+ G+ T N+ A +P + T++++L A ++G + + +H +K
Sbjct: 286 TIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKK 345
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+ VSN L+D YAKCG + AL +F ++S+ ++LVSW ++ G AMHG G+ A
Sbjct: 346 IRIKC-SVNVSNALVDMYAKCGRVDKALSIFNEMSM--RDLVSWNCMLQGLAMHGHGEKA 402
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
++ F +MQ+ G KP++VT +++L AC+H G HYGC++D
Sbjct: 403 IQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMID 462
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+LGR GRLE+A ++ +P E D V+ LLGAC H V + E+V +++ +E+ + G
Sbjct: 463 LLGRGGRLEEAFRLVQSMPMEPND-VIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPG 521
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+Y ++ NI A G + +R M K G S +
Sbjct: 522 NYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSI 560
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 181/388 (46%), Gaps = 75/388 (19%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-DSFTYSFLIRTCVTLSYPN 85
L+NTL+ + KAF + +Q+ LF D+FTY FL++ C +
Sbjct: 88 LYNTLIRAHVQNSQSLKAFATFFDMQK---------NGLFADNFTYPFLLKACNGKGWLP 138
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL--KDSSKLFDELPERNLVTWNVMITG 143
+H + K GF ++V +L++ Y G L + KLF E+ E++LV+WN MI G
Sbjct: 139 TVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGG 198
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
LVK G+L AR LF+EM R+ VSW ILDGY + + A + +P
Sbjct: 199 LVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQA------FNLFEKMP----- 247
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
+R ++ VS Y K G + A LF+ + KNLV+WT
Sbjct: 248 --------------ERNVVSWSTMVSG-----YCKTGDMEMARMLFDKMPF--KNLVTWT 286
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
IISGFA G+ K A + +M+ GLKP+ T +S+L AC+ GL
Sbjct: 287 IIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKI 346
Query: 310 HYGC-------LVDMLGRAGRLEQAEKIALGIPSEIT--DVVVRRILLGACSFHGNVEMG 360
C LVDM + GR+++ AL I +E++ D+V +L + HG+ G
Sbjct: 347 RIKCSVNVSNALVDMYAKCGRVDK----ALSIFNEMSMRDLVSWNCMLQGLAMHGH---G 399
Query: 361 ERVTRKVLEMER-GNGGDYVLMYNILAG 387
E+ + +M++ G D V + IL
Sbjct: 400 EKAIQLFSKMQQEGFKPDKVTLIAILCA 427
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 30/244 (12%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
K+A LY Q++ + L+P D T ++ C LG ++HA I K+ +
Sbjct: 299 KEATTLYNQMEA------AGLKP--DDGTLISILAACAESGLLVLGKKVHASIKKIRIKC 350
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
V V+ ALV+MY G + + +F+E+ R+LV+WN M+ GL G E A LF +M
Sbjct: 351 SVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQ 410
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+G+ +P ++T++A+L A G V E+
Sbjct: 411 ----------QEGF-----------KPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHG 449
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
I C+ID + G + A +L + + +E +++ W +++ +H A +
Sbjct: 450 IVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVI-WGTLLGACRVHNAVPLAEKV 508
Query: 282 FERM 285
+R+
Sbjct: 509 LDRL 512
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 46/281 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
++HA I K + +YV L++ + + + +F+++ + N+ +N +I V+
Sbjct: 41 EVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
+ A + F +M + NG + T +L A G +
Sbjct: 101 QSLKAFATFFDM-------------------QKNGLFAD--NFTYPFLLKACNGKGWLPT 139
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC--IFSALKLFEDISVERKNLVSWTSII 266
Q+IH + EK GF D+ V N LID+Y+KCG + A+KLF ++ K+LVSW S+I
Sbjct: 140 VQMIHCHVEKYGFFG-DLFVPNSLIDSYSKCGLLGVNYAMKLFMEMG--EKDLVSWNSMI 196
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326
G G A + F+ M + + + ++D +AG + Q
Sbjct: 197 GGLVKAGDLGRARKLFDEMAE------------------RDAVSWNTILDGYVKAGEMSQ 238
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
A + +P +VV ++ G++EM + K+
Sbjct: 239 AFNLFEKMPER--NVVSWSTMVSGYCKTGDMEMARMLFDKM 277
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 218/431 (50%), Gaps = 88/431 (20%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
S +RP D +T+ +++ C TL G ++H K+GFQ +V+V +L++MY GF
Sbjct: 112 SEIRP--DFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 166
Query: 120 KDSSKLFDELPERNLVTWNVMITGLV---------------------------------- 145
+ LFD++P R++ +WN MI+GL+
Sbjct: 167 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVF 226
Query: 146 -----KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE------------- 187
K G L+ A +FE +P ++V+SW ++ GY + NG ++E
Sbjct: 227 VDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQ----NGLASEAIEVYKMMEECKE 282
Query: 188 --PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P++ T +++LPA GA++ IHG K + D+ V+ CLID Y KCG + A
Sbjct: 283 IIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLH-LDVFVATCLIDVYGKCGRLVDA 341
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+ LF V +++ V+W +IIS +HG + ++ F M G+KP+ VTF+S+L+ACS
Sbjct: 342 MSLF--YQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 399
Query: 306 HGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
H G HYGC+VD+LGRAG LE A +P + D +
Sbjct: 400 HSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQ-PDASIW 458
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLGAC HGN+E+G+ + ++ E++ N G YVL+ NI A VG++ +++R + ER
Sbjct: 459 GALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARER 518
Query: 405 NALKFPGRSLV 415
K PG S +
Sbjct: 519 GLKKTPGWSTI 529
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 160/366 (43%), Gaps = 74/366 (20%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
LHA++ G ++++T LVN+Y +LG + S FD++P++++ WN MI+ V G
Sbjct: 38 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97
Query: 150 LEYARSLFEEM------------------PC------RNVVSW-------------TGIL 172
A F ++ C R + W ++
Sbjct: 98 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLI 157
Query: 173 DGYTRMNRSNGASTEPSEITIL------AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
Y+R + A + ++ A++ + QNG + G +
Sbjct: 158 HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFV 217
Query: 227 RVSNCL---IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
V + L +D YAK G + SA K+FE I V K+++SW ++I+G+A +G+ A+E ++
Sbjct: 218 TVVSILPVFVDMYAKLGLLDSAHKVFEIIPV--KDVISWNTLITGYAQNGLASEAIEVYK 275
Query: 284 RMQKVG-LKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRA 321
M++ + PN+ T++S+L A +H G L G CL+D+ G+
Sbjct: 276 MMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKC 335
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
GRL A + +P E + V ++ HG+ E ++ ++L + G D+V
Sbjct: 336 GRLVDAMSLFYQVPQESS--VTWNAIISCHGIHGHAEKTLKLFGEML--DEGVKPDHVTF 391
Query: 382 YNILAG 387
++L+
Sbjct: 392 VSLLSA 397
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 208/427 (48%), Gaps = 68/427 (15%)
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
Q Y H L S+T+S L++ C + LG +H I K GF+SH++V TALV+
Sbjct: 123 QCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDF 182
Query: 113 YVSLGFLKDSSKLFDEL-------------------------------PERNLVTWNVMI 141
Y L L ++ K+FDE+ PERN TWN MI
Sbjct: 183 YSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMI 242
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEI 191
G + G +E A LF +MP ++++SWT ++ Y++ + A P E+
Sbjct: 243 DGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEV 302
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ V A GA+ + IH Y +G N D+ + + L+D YAKCG + +L +F
Sbjct: 303 TMSTVASACAHIGALELGKEIHHYVMSQGLN-LDVYIGSALVDMYAKCGSLDLSLLIF-- 359
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ KNL W ++I G A+HG + A+ F M++ + PN VTF+S+L+AC+H GL
Sbjct: 360 FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVD 419
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VDML ++G L +A ++ + E + ++ LL
Sbjct: 420 EGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFE-PNSIIWGALLN 478
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA-LK 408
C HGN E+ E +++ +E N G Y L+ ++ A +++ +R +M E+ K
Sbjct: 479 GCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKK 538
Query: 409 FPGRSLV 415
+PG S +
Sbjct: 539 YPGSSWI 545
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 140/347 (40%), Gaps = 90/347 (25%)
Query: 61 PLRPLFDSFTYSFL--IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
P RP SF + L I+ C T++ +LH + + + +++ + LV+ ++S F
Sbjct: 33 PSRP---SFKQTLLNRIKNCSTIN------ELHGLCASM-IKTNAIQDCFLVHQFISASF 82
Query: 119 LKDSSKL----FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
+S F ++ N+ +N MI G V G P R + + +L+
Sbjct: 83 ALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCG-----------YPFRALQCYVHMLEE 131
Query: 175 YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
++ P+ T +++ A AV Q++H + K+GF + + V L+D
Sbjct: 132 ---------SNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES-HLFVQTALVD 181
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y+K + A K+F+++ ++ +WT+++S A G +A + FE M P R
Sbjct: 182 FYSKLEILSEARKVFDEMC--ERDAFAWTAMLSALARVGDMDSARKLFEEM------PER 233
Query: 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI------------------------ 330
T + ++D R G +E AE +
Sbjct: 234 NT------------ATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQ 281
Query: 331 ---ALGIPSE------ITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
AL I SE I D V + AC+ G +E+G+ + V+
Sbjct: 282 YQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVM 328
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 154/474 (32%), Positives = 235/474 (49%), Gaps = 72/474 (15%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P ++ R H L + H LL F LA P F +L + H
Sbjct: 19 PLTSIAELRQHHSQLIRLGVASHPAHARRLLSF--LARDPDSHFPYASRLLAHHPAPHPA 76
Query: 62 L-RPLF----------------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98
L PLF D FT+ ++ L +L QLHA++ K+G
Sbjct: 77 LFNPLFSALPTRHAARLLALMLSLPLHPDHFTFPRILPGAQPL---HLVAQLHALLLKLG 133
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLF-----DELPERNLVTWNVMITGLVKWGELEYA 153
F +H AL+ Y++ +S++F D L ++V+W M+ GLVK G ++ A
Sbjct: 134 FHAHTQSLNALLAAYLANARPDLASRVFRGGGGDAL---DVVSWTTMVGGLVKLGRVDDA 190
Query: 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV----------LPAIWQN 203
R LF+ MP RN+VSW ++ GY + R A E+ V + A
Sbjct: 191 RELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMRARGVDGNAFVAATAVVACTGA 250
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA+ + +H + E+ G D +++ ++D Y KCGC+ A ++FE + + L SW
Sbjct: 251 GALARGREVHRWVERSGIE-MDDKLATAVVDMYCKCGCVEEAWRVFEALPA--RGLTSWN 307
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
+I GFA+HG G+ A+ F M++ G+ P+ VT ++VL AC+H G+
Sbjct: 308 CMIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVLTACAHAGMVSEGRHYFNYISQR 367
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HYGC+VD+ GRAG+LE+A+K+ +P E DV V L GA HG+V++GE
Sbjct: 368 YGIVPKMEHYGCMVDLYGRAGQLEEAKKVIQDMPME-PDVGVLGALFGASKIHGDVDLGE 426
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +V+E++ N G YVL+ N+LA GR+ D R+RR+MDERN K GRS++
Sbjct: 427 AIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVI 480
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/443 (30%), Positives = 227/443 (51%), Gaps = 42/443 (9%)
Query: 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP 64
NN +S+ + NS FN+++ +S + +P ++F Y ++ HS L P
Sbjct: 54 NNPNNLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRI----LHSAGYLAP 109
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
D++T++FL+RT L G+ +H K GF+ +V + L+ MY LG L +
Sbjct: 110 --DNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHR 167
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F + E +LV M++ K G++ +AR LF++M ++ ++W ++ GY + +S A
Sbjct: 168 VFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREA 227
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
+ +E+++++VL A GA+ + H Y E+ + + LID
Sbjct: 228 LSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLR-MTLTLGTALID 286
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YAKCG + A+++F ++ KN+ +W+S I G AM+G G+ +E F M++ ++PN
Sbjct: 287 MYAKCGNMNKAMEVF--WGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNE 344
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+SVL CS GL HYGC+VD+ GRAG L++A
Sbjct: 345 ITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFIN 404
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P V LL AC + N+EMGE +RK++E+E N G YVL+ NI A +
Sbjct: 405 SMPVR-PHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWD 463
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
+R+ M+ + K PG S++
Sbjct: 464 RVSNVRQTMNVKGVRKQPGCSVI 486
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/381 (34%), Positives = 198/381 (51%), Gaps = 51/381 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T ++ +C L +LG + H I + G + V + AL++MY+ G L+ + KLF
Sbjct: 179 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D + + +V+W M LF+EMP ++VV W ++ GY NR A
Sbjct: 239 DSMTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALA 283
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ P E+T+++ L A Q GA+ IH Y EK + ++ + LID Y
Sbjct: 284 LFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVALGTALIDMY 342
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG I A+++F+++ +N ++WT+IISG A+HG A+ F M + P+ VT
Sbjct: 343 AKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 400
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FL +L+AC HGGL HY C+VD+LGRAG LE+AE++ +
Sbjct: 401 FLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSM 460
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E D VV L AC HGNV MGER K+L+M+ + G YVL+ N+ + +A
Sbjct: 461 PIE-ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEA 519
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+ R++M +R K PG S +
Sbjct: 520 GKXRKLMRQRGVEKTPGCSSI 540
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 174/368 (47%), Gaps = 66/368 (17%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T +N + + +++P++A +LYK++ Q +P D++TY L + C LS
Sbjct: 42 NTFSWNVAIRGFLDSENPREAVVLYKRVLQC-----DGTKP--DNYTYPLLFKACARLSL 94
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+G+++ + +GF S ++V+ A++++ VS G L + K+FD+ R+LV+WN MI G
Sbjct: 95 IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 154
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V+ G A + + EM + +P E+T++ V+ + Q
Sbjct: 155 YVRRGWAYEALNFYREMKVEGI---------------------KPDEVTMIGVVSSCAQL 193
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS---------- 253
+ + H Y E+ G + ++N L+D Y KCG + SA KLF+ ++
Sbjct: 194 EDLDLGRESHCYIEENGLK-LTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM 252
Query: 254 ----VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GG 308
+ K++V W ++I G+ GK A+ F MQ + + P+ VT +S L+ACS G
Sbjct: 253 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 312
Query: 309 LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
L G L+DM + G++ +A ++ +P + + ++
Sbjct: 313 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR--NSLTWTAII 370
Query: 349 GACSFHGN 356
+ HGN
Sbjct: 371 SGLALHGN 378
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 111/262 (42%), Gaps = 33/262 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y A+ K+A L+ ++Q + + D T + C L ++G
Sbjct: 265 WNAMIGGYVHANRGKEALALFNEMQAMNINP--------DEVTMVSCLSACSQLGALDVG 316
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I K +V + TAL++MY G + + ++F ELP RN +TW +I+GL
Sbjct: 317 IWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALH 376
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A + F EM +V+ P E+T L +L A G V
Sbjct: 377 GNAHGAIAYFSEMIDNSVM---------------------PDEVTFLGLLSACCHGGLVE 415
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + + ++ +C++D + G + A +L + + +E + V W ++
Sbjct: 416 EGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIE-ADAVVWGALFF 474
Query: 268 GFAMHG---MGKAAVENFERMQ 286
+HG MG+ A +M
Sbjct: 475 ACRIHGNVLMGERAASKLLQMD 496
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 39/226 (17%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWT----GILDG---------YTRMNRSNGAS 185
+ + +W +L+Y ++ N SW G LD Y R+ + +G
Sbjct: 17 IAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDG-- 74
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+P T + A + +R I G+ GF++ DI VSN +I CG + A
Sbjct: 75 TKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS-DIFVSNAVIHLLVSCGDLDGA 133
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
K+F+ V ++LVSW S+I+G+ G A+ + M+ G+KP+ VT + V+++C+
Sbjct: 134 RKMFDKSCV--RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCA 191
Query: 306 H----------------GGLHY-----GCLVDMLGRAGRLEQAEKI 330
GL L+DM + G LE A K+
Sbjct: 192 QLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKL 237
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 199/375 (53%), Gaps = 38/375 (10%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L LG ++H I+ + AL++MY G + + ++FD + +N+
Sbjct: 217 LSACAVLRNLELGKEIHDYIAS-ELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNV 275
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------- 184
W M+TG V G+L+ AR+LFE P R++V WT +++GY + NR
Sbjct: 276 NCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIR 335
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
+P + ++ +L Q+GA+ + IH Y ++ D V LI+ YAKCGCI
Sbjct: 336 GVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKV-DAVVGTALIEMYAKCGCIEK 394
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
+ ++F ++ K+ SWTSII G AM+G A+E F+ MQ GLKP+ +TF++VL+AC
Sbjct: 395 SFEIFN--GLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSAC 452
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
SH GL HYGC +D+LGRAG L++AE++ +P++ +++
Sbjct: 453 SHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEII 512
Query: 343 V--RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V LL AC +GN++MGER+ + +++ + + L+ +I A R+ D ++R
Sbjct: 513 VPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNK 572
Query: 401 MDERNALKFPGRSLV 415
M + K PG S +
Sbjct: 573 MKDLGIKKVPGYSAI 587
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 108/472 (22%), Positives = 199/472 (42%), Gaps = 129/472 (27%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N ++ + + S + A L++QL++ H P D++TY ++++ +
Sbjct: 74 FIYNLMIKAFVKSGSFRSAISLFQQLRE---HGVWP-----DNYTYPYVLKGIGCIGEVR 125
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G ++HA + K G + YV + ++MY LG ++ +++F+E+P+R+ V+WN+MI+G V
Sbjct: 126 EGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYV 185
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ E A ++ M WT ++ +P+E T+++ L A
Sbjct: 186 RCKRFEEAVDVYRRM-------WT-------------ESNEKPNEATVVSTLSAC---AV 222
Query: 206 VRNCQL---IHGYGEKRGFNAFDIR--VSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
+RN +L IH Y + D+ + N L+D Y KCG + A ++F+ ++V KN+
Sbjct: 223 LRNLELGKEIHDYIA----SELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTV--KNVN 276
Query: 261 SWTSIISGFAMHGMGKAAVENFER-------------------------------MQKVG 289
WTS+++G+ + G A FER MQ G
Sbjct: 277 CWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRG 336
Query: 290 LKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAE 328
+KP++ +++L C+ G L G L++M + G +E++
Sbjct: 337 VKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSF 396
Query: 329 KIALGI--------------------PSEI-------------TDVVVRRILLGACSFHG 355
+I G+ PSE D + +L ACS G
Sbjct: 397 EIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAG 456
Query: 356 NVEMGERVTRKVLEME--RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
VE G ++ + M N Y ++L G +AE L + + +N
Sbjct: 457 LVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQN 508
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 30/239 (12%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV--NMYVSLGFLKDSSKLFD 127
TY L+++C ++S Q+ A I VG Q L+ +M SLG ++++F+
Sbjct: 10 TYISLLKSCKSMSQLK---QIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFN 66
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ + +L +N+MI VK G A SLF+++ R +G
Sbjct: 67 YIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQL-------------------REHGVW-- 105
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T VL I G VR + +H + K G FD V N +D YA+ G + +
Sbjct: 106 PDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLE-FDPYVCNSFMDMYAELGLVEGFTQ 164
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACS 305
+FE++ ++ VSW +ISG+ + AV+ + RM + KPN T +S L+AC+
Sbjct: 165 VFEEMP--DRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACA 221
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 23/195 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F L+ C G +H I + + V TAL+ MY G ++ S ++F
Sbjct: 340 DKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIF 399
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+ L E++ +W +I GL G+ A LF+ M
Sbjct: 400 NGLKEKDTTSWTSIICGLAMNGKPSEALELFKAM---------------------QTCGL 438
Query: 187 EPSEITILAVLPAIWQNGAVRNC-QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
+P +IT +AVL A G V +L H ++ C ID + G + A
Sbjct: 439 KPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEP-NLEHYGCFIDLLGRAGLLQEA 497
Query: 246 LKLFEDISVERKNLV 260
+L + + + ++
Sbjct: 498 EELVKKLPAQNNEII 512
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 223/414 (53%), Gaps = 52/414 (12%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ L+N ++ Y A +YKQ+ H +P+ P D FT+ F++++C L
Sbjct: 121 NAFLYNAMIRAYKHNKVYVLAITVYKQMLG-NPHGENPIFP--DKFTFPFVVKSCAGLMC 177
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN--LVTWNVMI 141
+LG Q+H + K G +S+ V +LV MYV L D+ ++F+E+ ER+ + +W ++
Sbjct: 178 YDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIV 237
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+G YAR + + L+ + RM EP EI++++VLP
Sbjct: 238 SG--------YAR----------IGCYADALEFFRRMQM---VGIEPDEISLVSVLPDCA 276
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
Q GA+ + IH Y +K GF +I V N LI+ YAKCG I +LF+ + + ++++S
Sbjct: 277 QLGALELGKWIHIYADKAGF-LRNICVCNALIEMYAKCGSIDQGRRLFDQM--KERDVIS 333
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W+++I G A HG + A+E F+ MQK ++P+ +TF+ +L AC+H GL
Sbjct: 334 WSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMK 393
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HYGCLV++LG +GRL+QA ++ +P + D + LL +C HGN+++
Sbjct: 394 RDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRK-PDSPIWGSLLSSCRSHGNLKI 452
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+LE+E + G+YVL+ N+ A +G++ R+R++M ++ K PG S
Sbjct: 453 AVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCS 506
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/418 (33%), Positives = 214/418 (51%), Gaps = 44/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ A +A L+ +++ H L L D FT L+ C + +G
Sbjct: 183 WNTMIGGYAQAGEVSEACALFGEMR------HQGL--LADVFTLVSLLFACSSEGNLEVG 234
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + G + + AL++MY G L + + FD +P +N+VTW M+ K
Sbjct: 235 RLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKH 294
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITILAVL 197
G ++ R FE+MP RN+VSW ++ Y + NR P E T+ VL
Sbjct: 295 GSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVL 354
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A QNG + + ++IH Y + FN + + N L+D YA+CG + +A+ LF ++ K
Sbjct: 355 SACGQNGDLASGKMIHCY-VRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMP--NK 411
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N++SW II AMHG + V F M P+ +TF+ +L+ACSHGGL
Sbjct: 412 NVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYF 471
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGR G L +A + + + DVVV LLGAC HG
Sbjct: 472 EAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIK-PDVVVWGALLGACRIHG 530
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
NVE+G+ V +++LE+E GG +VL+ N+ ++ D ++LR++M E+ K G S
Sbjct: 531 NVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVS 588
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 175/385 (45%), Gaps = 86/385 (22%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NTL+ YS +D P++A L++ + Q + P + FT F+++ C T+
Sbjct: 80 FMYNTLVRAYSNSDCPQEALRLHRGVLQ------RGILP--NEFTLPFVLKACTTVRAVE 131
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
H V+ K+GF ++V AL++ + S G L+DS + F E+ +RN+V+WN MI G
Sbjct: 132 HALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYA 191
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ GE+ A +LF EM R G + T++++L A G
Sbjct: 192 QAGEVSEACALFGEM-------------------RHQGLLADV--FTLVSLLFACSSEGN 230
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ +L+H + G + D + N L+D Y KCG ++ A + F+ + + KN+V+WTS+
Sbjct: 231 LEVGRLVHCHMLVSG-SRVDRILGNALLDMYGKCGDLWMAHRCFDMMPI--KNVVTWTSM 287
Query: 266 ISGFAMHGMGKAAVENFE-------------------------------RMQKVGLKPNR 294
+ A HG A + FE RM+ +G+ P+
Sbjct: 288 LCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDE 347
Query: 295 VTFLSVLNACSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKIALG 333
T VL+AC G +H L+DM R G+++ A +
Sbjct: 348 FTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTE 407
Query: 334 IPSEITDVVVRRILLGACSFHGNVE 358
+P++ +V+ +++GA + HG +
Sbjct: 408 MPNK--NVISWNVIIGALAMHGRAQ 430
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 154/365 (42%), Gaps = 65/365 (17%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL------GFLKDSSKLFD 127
L+R C ++ + + Q+HA + GF V + L+ Y +L G L + +LFD
Sbjct: 16 LLRQCRSIQHLD---QIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFD 72
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+PE + +N ++ Y+ S + P + G+L
Sbjct: 73 RIPEPDRFMYNTLVRA--------YSNS---DCPQEALRLHRGVLQ----------RGIL 111
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P+E T+ VL A AV + HG K GF I V+N L+ +A G + + +
Sbjct: 112 PNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGF-VQQIFVANALLHFHASAGSLRDSRR 170
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SH 306
F +++ +N+VSW ++I G+A G A F M+ GL + T +S+L AC S
Sbjct: 171 FFGEMA--DRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSE 228
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G L G L+DM G+ G L A + +P I +VV
Sbjct: 229 GNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMP--IKNVVTWTS 286
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+L A + HG+V+ V +M N ++ +N A + YV RL +D N
Sbjct: 287 MLCAQAKHGSVDA---VRDWFEQMPERN----IVSWN--AMISCYVQCGRLHETLDLYNR 337
Query: 407 LKFPG 411
++ G
Sbjct: 338 MRSLG 342
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 43/371 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T+ FL+++ + S +LG +HA I + G +V T+L++MY S G + + LF
Sbjct: 63 DFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLF 122
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+PERN+++W+ MI G V+ G+ + A +LF EM G+ D
Sbjct: 123 AVMPERNVISWSCMINGYVRCGQYKEALALFREM------QMLGVND------------V 164
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+E T+ VL A + GA+ + + H Y +K G D+ + LID YAKCG + A
Sbjct: 165 RPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM-PVDVVLGTALIDMYAKCGSVEKAT 223
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F ++ K++++W+++ISG AMHG+ + V F +M G++PN VTFL+V AC H
Sbjct: 224 WVFSNLG-PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 282
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GGL HYGC+VD+ GRAGR+++A + +P E DV+V
Sbjct: 283 GGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPME-PDVLVW 341
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LL HG++E E +K++E+E N G YVL+ N+ A GR+ D +R +M+
Sbjct: 342 GALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETM 401
Query: 405 NALKFPGRSLV 415
K PG SL+
Sbjct: 402 GIKKVPGCSLI 412
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 214/414 (51%), Gaps = 57/414 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+NT++ P+KAF YK++Q + D+FTYSFL++ C L
Sbjct: 117 FLWNTMIRGLGRTRQPEKAFEFYKRMQ--------VKGEVLDNFTYSFLVKVCGQLGSDL 168
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+H + K G + HV+V LV+MY ++ ++ LF+E+P+ LV WN +I V
Sbjct: 169 LGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNV 228
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G + A LF RM +S +P + T + L A G
Sbjct: 229 YCGRYKEAIELF------------------FRMLQS---GLKPDDATFVVTLSACAALGE 267
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H + G + VSN LID YAKCG + +A ++F + + +N+VSW ++
Sbjct: 268 LDIGRRVHSCIDHTGLGNV-VSVSNSLIDMYAKCGVVEAAYEIFNKM--KGRNIVSWNTM 324
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGL--------------- 309
I G AMHG G A+E F +M + L PN VTFL VL ACSHGG+
Sbjct: 325 ILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDY 384
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYG +VD+LGRAG +E+A ++ +P E ++ +V R LL AC HGN+E+ E+
Sbjct: 385 NIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIE-SNSIVWRTLLAACRVHGNLELAEQ 443
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPGRSLV 415
V + +LE+E + DYVL+ N+ A G++ R+R+ M R K PG S +
Sbjct: 444 VRQXLLELEPDHSSDYVLLANMYASAGQWNKVXRVRKSMHIRGVQKPKPGNSYI 497
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 131/296 (44%), Gaps = 51/296 (17%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS----- 58
S+ + +IH ++L + L H + NTL+H Y + + A L++++ + Y +
Sbjct: 166 SDLLGKQIHCNVLK-HGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTII 224
Query: 59 --------------------HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98
S L+P D T+ + C L ++G ++H+ I G
Sbjct: 225 DCNVYCGRYKEAIELFFRMLQSGLKP--DDATFVVTLSACAALGELDIGRRVHSCIDHTG 282
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
+ V V+ +L++MY G ++ + ++F+++ RN+V+WN MI GL G + A LF
Sbjct: 283 LGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFS 342
Query: 159 EMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
+M + + P+E+T L VL A G V + +
Sbjct: 343 KMLEEKLAT--------------------PNEVTFLGVLCACSHGGMVEEGRRYFDI-MR 381
Query: 219 RGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
R +N I+ ++D + G + A +L + + +E ++V W ++++ +HG
Sbjct: 382 RDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIV-WRTLLAACRVHG 436
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 235/458 (51%), Gaps = 82/458 (17%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++N+L+ YS +D P A LL++++ S L P + FT F+++ C S
Sbjct: 52 NKFMYNSLIRGYSNSDDPIDAVLLFRRM------ICSGLSP--NEFTLPFVLKACGCKSA 103
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL-------------- 129
+H + K+G S V+V AL+ +YV G + + KLFD++
Sbjct: 104 YWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNAL 163
Query: 130 --------------------PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
E+N+V+W MI+ + G +E AR +F++MP +NVVSW
Sbjct: 164 VDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWN 223
Query: 170 GILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG-EK 218
++ Y R N+ + P E T++++L A Q G + + IH Y
Sbjct: 224 SMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN 283
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+G A+ + + N LID YAKCG + +AL +F + + KNLVSW II A+HG G A
Sbjct: 284 KG--AYGVTLYNSLIDMYAKCGPVVTALDIF--LEMPGKNLVSWNVIIGALALHGCGLEA 339
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
++ FE MQ G P+ +T +L+ACSH GL HY C+VD
Sbjct: 340 IKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVD 399
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+LGR G L +A ++ +P + DVVV LLGAC HGNVE+G+++ +++LE+E +GG
Sbjct: 400 LLGRGGLLGEAIELIGRMPMK-PDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGG 458
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
YVL+ NI R+ D +++R++M +R K GR++
Sbjct: 459 LYVLISNIYWEAQRWEDVKKIRKLMIDRGIKK--GRAI 494
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 120/303 (39%), Gaps = 99/303 (32%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVL 197
G+L+YA+ +F+++P N + ++ GY+ + R + P+E T+ VL
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAF--------------------------------- 224
A A L+HG K G +
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLI 155
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH------------ 272
DI V N L+D YAKCG + SA +F+ + KN+VSWTS+IS +A H
Sbjct: 156 DIIVRNALVDMYAKCGNLHSAQAIFD--RTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ 213
Query: 273 -------------------GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG----- 308
G + A++ F +M+ + P+ T +S+L ACS G
Sbjct: 214 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 273
Query: 309 --LH--------------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
+H Y L+DM + G + A I L +P + ++V +++GA +
Sbjct: 274 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGK--NLVSWNVIIGALA 331
Query: 353 FHG 355
HG
Sbjct: 332 LHG 334
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 243/506 (48%), Gaps = 125/506 (24%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
N+ R+ + + N +H L N+L+ ++ P +AF ++ ++Q+ +
Sbjct: 68 NLAVRVFNQVQEPN--VH---LCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFA------- 115
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY------------ 113
D+FTY FL++ C S+ + +H I K+G S +YV AL++ Y
Sbjct: 116 -DNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAM 174
Query: 114 ---------------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
V G L+D+ +LFDE+P+R+L++WN M+ G + E+
Sbjct: 175 KLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSK 234
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTR-----MNR------------------------SNG 183
A LFE+MP RN VSW+ ++ GY++ M R G
Sbjct: 235 AFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKG 294
Query: 184 ASTEPSEI--------------TILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIR 227
E + ++++L A ++G + IH ++ G NA+
Sbjct: 295 LLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAY--- 351
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V N L+D YAKCG + A +F DI +K+LVSW +++ G +HG GK A+E F RM++
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIP--KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR 409
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
G++P++VTF++VL +C+H GL HYGCLVD+LGR GRL+
Sbjct: 410 EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLK 469
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+A K+ +P E +VV+ LLGAC H V++ + V +++++ + G+Y L+ NI
Sbjct: 470 EAIKVVQTMPME-PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNI- 527
Query: 386 AGVGRYVDAERLRRVMDERNALKFPG 411
Y AE V D R+ +K G
Sbjct: 528 -----YAAAEDWEGVADIRSKMKSMG 548
>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g47530-like [Glycine max]
Length = 515
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 220/413 (53%), Gaps = 56/413 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV--TLSYPN 85
+NT++ S++DSP+K LLY+ +++ + D + SF++++C+ Y
Sbjct: 5 YNTMIRACSMSDSPQKGLLLYRDMRRRGIAA--------DPLSSSFVVKSCIRLXGLYLL 56
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H I K G Q + TA++++Y D+ K+FDE+P R+ V WNVMI+ +
Sbjct: 57 GGVQVHCNIFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCI 116
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ A SLF+ + +++ EP ++T L +L A A
Sbjct: 117 RNNRTRDALSLFDVL-------------------QNSSYKCEPDDVTCLLLLQACAHLYA 157
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IHGY + G+ + +SN LI Y++CGC+ A ++F+ KN+VSW+++
Sbjct: 158 LEFGERIHGYMMEHGYGGA-LNLSNALISMYSRCGCLDKAXEVFK--GTGNKNVVSWSAM 214
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
ISG AM+G G+ A+E+FE M ++G++P+ T VL+ACS+ G+
Sbjct: 215 ISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREF 274
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+VD+LG AG L++A ++ + + E D R LLGAC HG+V +GER
Sbjct: 275 GVTPNVHHYGCMVDLLGHAGLLDKAXQLIMSMV-EKPDSTTWRTLLGACRIHGHVTLGER 333
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V ++E++ GD+VL+ NI + G + +R++M ++ PG S +
Sbjct: 334 VIGHLIELKAQEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTI 386
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 220/442 (49%), Gaps = 79/442 (17%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
P+K LY ++++ SP D +T++F+++ C L + + G +H + + GF
Sbjct: 93 PEKTVALYTEMEK---RGVSP-----DRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFL 144
Query: 101 SHVYVNTALV-------------------------------NMYVSLGFLKDSSKLFDEL 129
+ YV AL+ + Y G + ++ +LFDE+
Sbjct: 145 LNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM 204
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MN 179
P+++ V WNVMITG +K E++ AR LF+ ++VV+W ++ GY
Sbjct: 205 PDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFK 264
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDT 235
A P +TIL++L A G + + +H Y + + I V N LID
Sbjct: 265 EMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDM 324
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
YAKCG I A+++F ++ ++L +W ++I G A+H + +VE FE MQ++ + PN V
Sbjct: 325 YAKCGSIDRAIEVFR--GMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEV 381
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ V+ ACSH G HYGC+VDMLGRAG LE+A
Sbjct: 382 TFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVES 441
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+ E + +V R LLGAC +GNVE+G+ K+L M + GDYVL+ NI A G++
Sbjct: 442 MKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDG 500
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+++R++ D+ K G SL+
Sbjct: 501 VQKVRKMFDDTRVKKPTGISLI 522
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 156/353 (44%), Gaps = 85/353 (24%)
Query: 89 QLHAVISKVGFQSHVYVNTALV-NMYVSL-GFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+HA + G S++ V L+ + +S+ G LK + KLF+E+P+ ++ N ++ G +
Sbjct: 30 QIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGSAQ 89
Query: 147 WGELEYARSLFEEMPCRNV----VSWTGILDGYTRMN-RSNGASTEPSEITILAVLPAIW 201
+ E +L+ EM R V ++T +L +++ RSNG + + +L
Sbjct: 90 SLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYV 149
Query: 202 QNGAV---RNC----------------------QLIHGYGEK-------RGFN------- 222
+N + NC + GY ++ R F+
Sbjct: 150 KNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQ 209
Query: 223 -AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
A+++ ++ CL KC + SA +LF+ + K++V+W ++ISG+ G K A+
Sbjct: 210 VAWNVMITGCL-----KCREMDSARELFDRFT--EKDVVTWNAMISGYVNCGYPKEALSI 262
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGG-------LH-------------------YGCLV 315
F+ M+ G P+ VT LS+L+AC+ G LH + L+
Sbjct: 263 FKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH---GNVEMGERVTR 365
DM + G +++A ++ G+ D+ L+ + H G+VEM E + R
Sbjct: 323 DMYAKCGSIDRAIEVFRGMKDR--DLSTWNTLIVGLALHHAEGSVEMFEEMQR 373
>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ F++ +I + L N G QLHA K+G +S+V+V +A+V+ Y L + ++ K F
Sbjct: 367 NQFSFGTVIPSATALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 426
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
++ E N+V++ +I G +K + A +LF MP RNVVSW ++ GY++M + A
Sbjct: 427 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVN 486
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P+E T + A+ A+ + HG K FD+ + N L+ Y
Sbjct: 487 LFVVMLREGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVFIGNSLVSFY 545
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + +L +F ++ +KN+VSW ++I G+A HG G A+ FE+MQ GL+PN VT
Sbjct: 546 AKCGSMEESLLVFN--TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVT 603
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
L +L AC+H GL H+ C+VD+L R+GR ++AEK +
Sbjct: 604 LLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHEL 663
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + + + LLG C H N+E+GE RK+L ++ + YV++ N + GR+
Sbjct: 664 PF-VPGIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSV 722
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R+ M E+ PG S +
Sbjct: 723 SMIRKEMREKRMKGVPGSSWI 743
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V Y + L D+ KLFDE+P ++V+ I ++ E A F M N+
Sbjct: 308 IVCSYSASKELWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNI--- 364
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+P++ + V+P+ + + + +H K G + ++ V
Sbjct: 365 ------------------KPNQFSFGTVIPSATALQDLNSGRQLHACAIKMGLES-NVFV 405
Query: 229 SNCLIDTYAKCGCIFSALKLFED----------------ISVER-------------KNL 259
+ ++D YAK I A K FED + ER +N+
Sbjct: 406 GSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNV 465
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH------GGLHYGC 313
VSW ++ISG++ G + AV F M + G PN TF ++A ++ G +G
Sbjct: 466 VSWNAMISGYSQMGYNEEAVNLFVVMLREGXLPNERTFPCAISAVANIAALGMGRSFHGS 525
Query: 314 LVDMLGR 320
V LG+
Sbjct: 526 AVKFLGK 532
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
++ Q HG K G + + + +Y+ ++ A KLF++ V ++VS T+
Sbjct: 286 LKESQRAHGRAVKLGTTILEPDI----VCSYSASKELWDACKLFDE--VPNWDVVSATAT 339
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLE 325
I FA + + A+ F RM + +KPN+ +F +V+ + + L D+ +GR
Sbjct: 340 IGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSAT-------ALQDL--NSGRQL 390
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
A I +G+ S + + F+ + + + N Y +
Sbjct: 391 HACAIKMGLESNVF------VGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGY 444
Query: 386 AGVGRYVDAERLRRVMDERNALKF 409
R+ DA L R M ERN + +
Sbjct: 445 LKKERFDDALALFRXMPERNVVSW 468
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 215/414 (51%), Gaps = 57/414 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+NT++ P+KAF YK++Q + D+FTYSFL++ C L
Sbjct: 17 FLWNTMIRGLGRTRQPEKAFEFYKRMQ--------VKGEVLDNFTYSFLVKVCGQLGSDL 68
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+H + K G + HV+V LV+MY ++ ++ LF+E+P+ LV WN +I V
Sbjct: 69 LGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNV 128
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G + A LF RM +S +P + T + L A G
Sbjct: 129 YCGRYKEAIELF------------------FRMLQS---GLKPDDATFVVTLSACAALGE 167
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H + G + VSN LID YAKCG + +A ++F + + +N+VSW ++
Sbjct: 168 LDIGRRVHSCIDHTGLGNV-VSVSNSLIDMYAKCGVVEAAYEIFNKM--KGRNIVSWNTM 224
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGL--------------- 309
I G AMHG G A+E F +M + L PN VTFL VL ACSHGG+
Sbjct: 225 ILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDY 284
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYG +VD+LGRAG +E+A ++ +P E ++ +V R LL AC HGN+E+ E+
Sbjct: 285 NIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIE-SNSIVWRTLLAACRVHGNLELAEQ 343
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPGRSLV 415
V +++LE+E + DYVL+ N+ A G++ R+R+ M R K PG S +
Sbjct: 344 VRQQLLELEPDHSSDYVLLANMYASAGQWNKVVRVRKSMHIRGVQKPKPGNSYI 397
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 53/316 (16%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS----- 58
S+ + +IH ++L + L H + NTL+H Y + + A L++++ + Y +
Sbjct: 66 SDLLGKQIHCNVLK-HGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTII 124
Query: 59 --------------------HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98
S L+P D T+ + C L ++G ++H+ I G
Sbjct: 125 DCNVYCGRYKEAIELFFRMLQSGLKP--DDATFVVTLSACAALGELDIGRRVHSCIDHTG 182
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
+ V V+ +L++MY G ++ + ++F+++ RN+V+WN MI GL G + A LF
Sbjct: 183 LGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFS 242
Query: 159 EMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
+M + + P+E+T L VL A G V + +
Sbjct: 243 KMLEEKLAT--------------------PNEVTFLGVLCACSHGGMVEEGRRYFDI-MR 281
Query: 219 RGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
R +N I+ ++D + G + A +L + + +E ++V W ++++ +HG +
Sbjct: 282 RDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIV-WRTLLAACRVHGNLEL 340
Query: 278 AVENFERMQKVGLKPN 293
A + R Q + L+P+
Sbjct: 341 AEQ--VRQQLLELEPD 354
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 224/454 (49%), Gaps = 79/454 (17%)
Query: 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
N +L + + P+K LY ++++ SP D +T++F+++ C L + + G
Sbjct: 47 NHVLRGSAQSMKPEKTVSLYTEMEK---RGVSP-----DRYTFTFVLKACSKLEWRSNGF 98
Query: 89 QLHAVISKVGFQSHVYVNTALV-------------------------------NMYVSLG 117
H + + GF + YV AL+ + Y G
Sbjct: 99 AFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRG 158
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
+ ++ +LFDE+P ++ V WNVMITG +K E++ AR LF+ ++VV+W ++ GY
Sbjct: 159 KIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVN 218
Query: 178 ----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
A P +TIL++L A G + + +H Y + + I
Sbjct: 219 CGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIY 278
Query: 228 VS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
V N LID YAKCG I A+++F V+ ++L +W ++I G A+H + ++E FE
Sbjct: 279 VGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDLSTWNTLIVGLALH-HAEGSIEMFE 335
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGG----------------------LHYGCLVDMLGRA 321
MQ++ + PN VTF+ V+ ACSH G HYGC+VDMLGRA
Sbjct: 336 EMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRA 395
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G+LE+A + E + +V R LLGAC +GNVE+G+ K+L M + GDYVL+
Sbjct: 396 GQLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLL 454
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A G++ +++R++ D+ K G SL+
Sbjct: 455 SNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 488
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 140/323 (43%), Gaps = 83/323 (25%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIL 172
G LK + KLFDE+P+ ++ N ++ G + + E SL+ EM R V ++T +L
Sbjct: 26 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 85
Query: 173 DGYTRMN-RSNGASTEPSEITILAVLPAIWQNGAV---RNC------------------- 209
+++ RSNG + + VL +N + NC
Sbjct: 86 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 145
Query: 210 ---QLIHGYGEK-------RGFN--------AFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+ GY ++ R F+ A+++ ++ CL KC + SA +LF+
Sbjct: 146 AWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCL-----KCKEMDSARELFDR 200
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG--- 308
+ K++V+W ++ISG+ G K A+ F+ M+ G P+ VT LS+L+AC+ G
Sbjct: 201 FT--EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLE 258
Query: 309 ----LH-------------------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
LH + L+DM + G +++A ++ G+ D+
Sbjct: 259 TGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDR--DLSTWN 316
Query: 346 ILLGACSFH---GNVEMGERVTR 365
L+ + H G++EM E + R
Sbjct: 317 TLIVGLALHHAEGSIEMFEEMQR 339
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 49/375 (13%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP D++T F+IR C L +G +H ++ K G +V ALV+MYV ++D+
Sbjct: 157 RP--DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDA 214
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
LFD++ ER+LVTW VMI G + G+ + LFE+M VV
Sbjct: 215 RFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV---------------- 258
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P ++ ++ V+ A + GA+ ++I Y +++ F D+ + +ID YAKCGC+
Sbjct: 259 -----PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ-LDVILGTAMIDMYAKCGCV 312
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
SA ++F+ +E KN++SW+++I+ + HG G+ A++ F M G+ P+++T S+L
Sbjct: 313 ESAREIFD--RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLY 370
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HY C+VD+LGRAGRL++A K+ + E D
Sbjct: 371 ACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIE-KD 429
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+ LGAC H +V + E+ +LE++ N G YVL+ NI A GR+ D ++R +
Sbjct: 430 EGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDL 489
Query: 401 MDERNALKFPGRSLV 415
M +R K PG + +
Sbjct: 490 MSQRRLKKTPGWTWI 504
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 200/375 (53%), Gaps = 49/375 (13%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP D++T F+IR C L +G +H ++ K G +V ALV+MY ++D+
Sbjct: 833 RP--DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA 890
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
LFD++ ER+LVTW VMI G + G + LF++M VV
Sbjct: 891 RFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV---------------- 934
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P ++ ++ V+ A + GA+ + I Y +++ F D+ + +ID +AKCGC+
Sbjct: 935 -----PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQ-LDVILGTAMIDMHAKCGCV 988
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
SA ++F+ +E KN++SW+++I+ + HG G+ A++ F M + G+ PN++T +S+L
Sbjct: 989 ESAREIFD--RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLY 1046
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HY C+VD+LGRAGRL++A K+ + E D
Sbjct: 1047 ACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXE-KD 1105
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+ LGAC H +V + E+ +LE++ N G Y+L+ NI A GR+ D ++R +
Sbjct: 1106 EGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDL 1165
Query: 401 MDERNALKFPGRSLV 415
M +R K PG + +
Sbjct: 1166 MSQRRLKKIPGWTWI 1180
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 47/289 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+HA S G ++ V L+ Y L D+ LFD + R+ V+W+VM+ G K G
Sbjct: 80 QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 139
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
+ F E+ P T+ V+ A ++
Sbjct: 140 DYINCFGTFRELI---------------------RCGARPDNYTLPFVIRACRDLKNLQM 178
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+LIH K G + D V L+D Y KC I A LF+ ++ ++LV+WT +I G
Sbjct: 179 GRLIHHIVYKFGLD-LDHFVCAALVDMYVKCREIEDARFLFD--KMQERDLVTWTVMIGG 235
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------- 312
+A G ++ FE+M++ G+ P++V ++V+ AC+ G +H
Sbjct: 236 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 295
Query: 313 -----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
++DM + G +E A +I + E +V+ ++ A +HG
Sbjct: 296 VILGTAMIDMYAKCGCVESAREIFDRM--EEKNVISWSAMIAAYGYHGQ 342
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 122/289 (42%), Gaps = 47/289 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+H S G ++ V LV Y L D+ LFD + R+ V+W+VM+ G K G
Sbjct: 756 QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
+ F E+ P T+ V+ A ++
Sbjct: 816 DYMNCFGTFRELI---------------------RCGARPDNYTLPFVIRACRDLKNLQM 854
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+LIH K G + D V L+D Y KC I A LF+ + ++LV+WT +I G
Sbjct: 855 GRLIHHIVYKFGLD-LDHFVCAALVDMYGKCREIEDARFLFDKMX--ERDLVTWTVMIGG 911
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------- 312
+A G ++ F++M++ G+ P++V ++V+ AC+ G +H
Sbjct: 912 YAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD 971
Query: 313 -----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
++DM + G +E A +I + E +V+ ++ A +HG
Sbjct: 972 VILGTAMIDMHAKCGCVESAREIFDRM--EEKNVISWSAMIAAYGYHGQ 1018
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 224/454 (49%), Gaps = 79/454 (17%)
Query: 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
N +L + + P+K LY ++++ SP D +T++F+++ C L + + G
Sbjct: 81 NHVLRGSAQSMKPEKTVSLYTEMEK---RGVSP-----DRYTFTFVLKACSKLEWRSNGF 132
Query: 89 QLHAVISKVGFQSHVYVNTALV-------------------------------NMYVSLG 117
H + + GF + YV AL+ + Y G
Sbjct: 133 AFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRG 192
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
+ ++ +LFDE+P ++ V WNVMITG +K E++ AR LF+ ++VV+W ++ GY
Sbjct: 193 KIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVN 252
Query: 178 ----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
A P +TIL++L A G + + +H Y + + I
Sbjct: 253 CGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIY 312
Query: 228 VS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
V N LID YAKCG I A+++F V+ ++L +W ++I G A+H + ++E FE
Sbjct: 313 VGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDLSTWNTLIVGLALH-HAEGSIEMFE 369
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
MQ++ + PN VTF+ V+ ACSH G HYGC+VDMLGRA
Sbjct: 370 EMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRA 429
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G+LE+A + E + +V R LLGAC +GNVE+G+ K+L M + GDYVL+
Sbjct: 430 GQLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLL 488
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A G++ +++R++ D+ K G SL+
Sbjct: 489 SNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 156/353 (44%), Gaps = 85/353 (24%)
Query: 89 QLHAVISKVGFQSHVYVNTALV-NMYVSL-GFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+HA + G S++ V L+ + +S+ G LK + KLFDE+P+ ++ N ++ G +
Sbjct: 30 QIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQ 89
Query: 147 WGELEYARSLFEEMPCRNV----VSWTGILDGYTRMN-RSNGASTEPSEITILAVLPAIW 201
+ E SL+ EM R V ++T +L +++ RSNG + + VL
Sbjct: 90 SMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYV 149
Query: 202 QNGAV---RNC----------------------QLIHGYGEK-------RGFN------- 222
+N + NC + GY ++ R F+
Sbjct: 150 KNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQ 209
Query: 223 -AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
A+++ ++ CL KC + SA +LF+ + K++V+W ++ISG+ G K A+
Sbjct: 210 VAWNVMITGCL-----KCKEMDSARELFDRFT--EKDVVTWNAMISGYVNCGYPKEALGI 262
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGG-------LH-------------------YGCLV 315
F+ M+ G P+ VT LS+L+AC+ G LH + L+
Sbjct: 263 FKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH---GNVEMGERVTR 365
DM + G +++A ++ G+ D+ L+ + H G++EM E + R
Sbjct: 323 DMYAKCGSIDRAIEVFRGVKDR--DLSTWNTLIVGLALHHAEGSIEMFEEMQR 373
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/390 (33%), Positives = 200/390 (51%), Gaps = 67/390 (17%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLK---------------------------- 120
Q+HAV+ + G H +N L Y SLG L
Sbjct: 48 QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107
Query: 121 ---DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
+ +LFD +PE++LV+ M+T K GEL+ AR LF+ M R+ V W ++DGYT+
Sbjct: 108 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 167
Query: 178 MNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
N A +P+E+T+L+VL A Q GA+ + + +H Y E G F++
Sbjct: 168 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ-FNVH 226
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V L+D Y+KCG + A +F+ I + K++V+W S+I G+AMHG + A++ F+ M +
Sbjct: 227 VGTALVDMYSKCGSLEDARLVFDKI--DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCR 284
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
+GL P +TF+ +L+AC H G HYGC+V++LGRAG +E
Sbjct: 285 MGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVE 344
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
QA ++ + E D V+ LLGAC HG + +GE++ +++ N G Y+L+ NI
Sbjct: 345 QAYELVKNMNIE-PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIY 403
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A VG + RLR +M + K PG S +
Sbjct: 404 AAVGNWDGVARLRTMMKDSGVKKEPGCSSI 433
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 35/257 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ P +A +L++++ + + +P + T ++ C L G
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLK------AKAKP--NEVTVLSVLSACGQLGALESG 209
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+ I G Q +V+V TALV+MY G L+D+ +FD++ ++++V WN MI G
Sbjct: 210 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 269
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G + A LF+ M CR P+ IT + +L A +G V
Sbjct: 270 GFSQEALQLFKSM-CR--------------------MGLHPTNITFIGILSACGHSGWVT 308
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + ++ G I C+++ + G + A +L +++++E + V W +++
Sbjct: 309 EGWDIFNKMKDEYGIEP-KIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-PDPVLWGTLL 366
Query: 267 SGFAMHG---MGKAAVE 280
+HG +G+ VE
Sbjct: 367 GACRLHGKIALGEKIVE 383
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 207/415 (49%), Gaps = 70/415 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT+ +I+ C +L LG QLHA + K F +H+ AL++MY + D+ +F
Sbjct: 40 DQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVF 99
Query: 127 DELPERNLVTWNVMITG------------------------LVKW---------GELEYA 153
+ R+L++W MI G LV W GEL A
Sbjct: 100 SRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGRPDLVAWNAIIAGFAYGELRDA 159
Query: 154 RSLFEEMPCR-NVVSWTGILDGYTRMNRSNG----------ASTEPSEITILAVLPAIWQ 202
FEEM C ++VSW IL R +++ + P IT+ VL A +
Sbjct: 160 IFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAE 219
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
++ +H Y K G N D V+N LID YAKCG + +A K+F+ S+ ++VSW
Sbjct: 220 TVSIEIGNQVHCYALKTGLNC-DTSVTNGLIDLYAKCGSLKTAHKIFD--SMINPDVVSW 276
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
+S+I G+A G G+ A++ F+ M+++ +KPN VTF+ VL ACSH GL
Sbjct: 277 SSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEK 336
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
H C+VD+L RAG L +AE + + D+VV + LL AC HGNV++G
Sbjct: 337 EFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFD-PDIVVWKTLLAACKTHGNVDVG 395
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+R +L+++ N +VL+ NI A G + D RLR +M +R K PG+S +
Sbjct: 396 KRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWI 450
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 35/234 (14%)
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTE-----------PSEITILAVLPAIWQNGAVRN 208
MP RNVVSWT ++ GY++ N G + E P + T +++ A G +
Sbjct: 1 MPERNVVSWTSVIAGYSQ-NGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGL 59
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+ +H + K F A I N LI Y K I AL +F ++ ++L+SW S+I+G
Sbjct: 60 GRQLHAHVLKSEFGA-HIIAQNALISMYTKSNLIIDALDVFSRMAT--RDLISWGSMIAG 116
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG--------CLVDM--- 317
F+ G A+ F+ M G +P+ V + +++ ++G L C D+
Sbjct: 117 FSQLGYELEALCYFKEMLHQG-RPDLVAWNAIIAGFAYGELRDAIFFFEEMRCNADLVSW 175
Query: 318 ---LGRAGRLEQAEKI-----ALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
L R +QAE++ + I D + +LGA + ++E+G +V
Sbjct: 176 NAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQV 229
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/389 (32%), Positives = 211/389 (54%), Gaps = 41/389 (10%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDS 122
P + F Y ++++ LS +H + K GF +V V TAL++ Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----- 177
+LFDE+ ERN+V+W M++G + G++ A +LFEEMP R+V SW IL T+
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFV 241
Query: 178 ------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
N P+E+T++ VL A Q G ++ + IH + +R ++ D+ VSN
Sbjct: 242 EAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSS-DVFVSNS 300
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-- 289
L+D Y KCG + A +F+ S +K+L +W S+I+ FA+HG + A+ FE M K+
Sbjct: 301 LVDLYGKCGNLEEASSVFKMSS--KKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSH 358
Query: 290 -LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+KP+ +TF+ +LNAC+HGGL HYGCL+D+LGRAG+ ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDE 418
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A + + E D + LL AC +G++++ E + ++ + NGG +M N+
Sbjct: 419 ALETMSTMKME-ADEAIWGSLLNACKKYGHLDLAEVAVKNLVALNPNNGGYVAMMANLYG 477
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
+G + +A R R+++ +NA K PG S +
Sbjct: 478 EMGNWEEARRARKMIKHQNAYKPPGWSQI 506
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 68/247 (27%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTR---MNRSNGAS----------TEPSEITILAV 196
L YAR +F+ N + +L GY+ ++ S+ S P+ V
Sbjct: 73 LSYARFIFDRFSFPNTHLYAAVLTGYSSSLPLHASSAFSFFRLMVNRSFPRPNHFIYPLV 132
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAF----------------DIRVSNCLIDT----- 235
L + + + L+H + K GF+ + I ++ L D
Sbjct: 133 LKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERN 192
Query: 236 ----------YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
YA+ G IF+A+ LFE++ +++ SW +I++ +G+ AV F RM
Sbjct: 193 VVSWTAMLSGYARSGDIFNAVALFEEM--PERDVPSWNAILAACTQNGLFVEAVSLFRRM 250
Query: 286 -QKVGLKPNRVTFLSVLNACSH-------GGLHY--------------GCLVDMLGRAGR 323
++PN VT + VL+AC+ G+H LVD+ G+ G
Sbjct: 251 INDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGN 310
Query: 324 LEQAEKI 330
LE+A +
Sbjct: 311 LEEASSV 317
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 208/427 (48%), Gaps = 68/427 (15%)
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
Q Y H L S+T+S L++ C + LG +H I K GF+SH++V TALV+
Sbjct: 220 QCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDF 279
Query: 113 YVSLGFLKDSSKLFDEL-------------------------------PERNLVTWNVMI 141
Y L L ++ K+FDE+ PERN TWN MI
Sbjct: 280 YSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMI 339
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEI 191
G + G +E A LF +MP ++++SWT ++ Y++ + A P E+
Sbjct: 340 DGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEV 399
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ V A GA+ + IH Y +G N D+ + + L+D YAKCG + +L +F
Sbjct: 400 TMSTVASACAHIGALELGKEIHHYVMSQGLN-LDVYIGSALVDMYAKCGSLDLSLLIF-- 456
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ KNL W ++I G A+HG + A+ F M++ + PN VTF+S+L+AC+H GL
Sbjct: 457 FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVD 516
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VDML ++G L +A ++ + E + ++ LL
Sbjct: 517 EGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFE-PNSIIWGALLN 575
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA-LK 408
C HGN E+ E +++ +E N G Y L+ ++ A +++ +R +M E+ K
Sbjct: 576 GCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKK 635
Query: 409 FPGRSLV 415
+PG S +
Sbjct: 636 YPGSSWI 642
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 141/348 (40%), Gaps = 88/348 (25%)
Query: 61 PLRPL-FDSFTYSFL--IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
PL+P SF + L I+ C T++ +LH + + + +++ + LV+ ++S
Sbjct: 126 PLQPPSCPSFKQTLLNRIKNCSTIN------ELHGLCASM-IKTNAIQDCFLVHQFISAS 178
Query: 118 FLKDSSKL----FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
F +S F ++ N+ +N MI G V G P R + + +L+
Sbjct: 179 FALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCG-----------YPFRALQCYVHMLE 227
Query: 174 GYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
++ P+ T +++ A AV Q++H + K+GF + + V L+
Sbjct: 228 E---------SNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES-HLFVQTALV 277
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y+K + A K+F+++ ++ +WT+++S A G +A + FE M P
Sbjct: 278 DFYSKLEILSEARKVFDEMC--ERDAFAWTAMVSALARVGDMDSARKLFEEM------PE 329
Query: 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI----------------------- 330
R T + ++D R G +E AE +
Sbjct: 330 RNT------------ATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNK 377
Query: 331 ----ALGIPSE------ITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
AL I SE I D V + AC+ G +E+G+ + V+
Sbjct: 378 QYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVM 425
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 222/420 (52%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ +S + +P+K+ +Y Q+ + L P D TY FL+++ LS LG
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRF------GLLP--DHMTYPFLMKSSSRLSNRKLG 127
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH + K G + +++ L++MY S + KLFDE+P +NLVTWN ++ K
Sbjct: 128 GSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKS 187
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
G++ AR +F+EM R+VV+W+ ++DGY + N A S++ +E+T+++V
Sbjct: 188 GDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSV 247
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
+ A GA+ + +H Y + + LID YAKCG I A +F SV+
Sbjct: 248 ICACAHLGALNRGKTVHRYILDVHL-PLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKE 306
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+ + W +II G A HG + +++ F +M++ + P+ +TFL +L ACSHGGL
Sbjct: 307 TDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHF 366
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG ++ A +P + T ++ +L G C HG
Sbjct: 367 FKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNG-CINHG 425
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+E+ E V +K++E++ N G YV + N+ A ++ A +R M+++ K G S++
Sbjct: 426 NLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSIL 485
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 191/344 (55%), Gaps = 45/344 (13%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ Y+ +G +K + KLFD +P R+ ++WN M+ G G++E LFEEMP RNV SW
Sbjct: 226 MVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSW 285
Query: 169 TGILDGYTRMNRSNGASTE---------------PSEITILAVLPAIWQNGAVRNCQLIH 213
G++ GY NG E P++ T++ VL A + GA+ + +H
Sbjct: 286 NGLIGGYAH----NGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVH 341
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
Y GF I V N LID Y+KCG I +A+++FE S++ K+L++W S+I G A HG
Sbjct: 342 VYAATIGFKG-SIYVGNALIDMYSKCGLIENAMEVFE--SMDLKDLITWNSMICGLATHG 398
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
G A+ F +M+ G KP+ +TF+ VL +C+H GL HY
Sbjct: 399 CGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHY 458
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VD+ GRAG L++A + +P E D V+ LLGAC + N+++ E +K++ +E
Sbjct: 459 GCMVDLFGRAGLLDRAIEFVKRMPME-ADAVIWAALLGACRIYKNIDLAELALQKLIVLE 517
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N +YVL+ NI +GR+ D RL+ +M + + K PG SL+
Sbjct: 518 PKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLI 561
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
++ C L +LG +H + +GF+ +YV AL++MY G ++++ ++F+ + ++
Sbjct: 324 VLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKD 383
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
L+TWN MI GL G A +LF +M + NG +P IT
Sbjct: 384 LITWNSMICGLATHGCGADALTLFHQM-------------------KING--EKPDGITF 422
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ VL + G V A I C++D + + G + A++ + +
Sbjct: 423 IGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMP 482
Query: 254 VERKNLVSWTSIISG 268
+E + V W +++
Sbjct: 483 ME-ADAVIWAALLGA 496
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 33/220 (15%)
Query: 54 IYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113
+Y+ P L + F L+R+C T++ L ++ A I GFQ + YV +V +
Sbjct: 13 LYSAQKHPRWVLEEHFIS--LLRSCKTVA---LLQKVQAQIITHGFQYNGYVAPNVVTSW 67
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
V L + + LFD P+ + WN + +R F R VV G
Sbjct: 68 VGLKQMAHARHLFDHFPDPKVELWNAI------------SRGYFHNAFYREVVFLFG--- 112
Query: 174 GYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVSNC 231
+ P+ T VL + + GA + IH K G N F V+
Sbjct: 113 ------KMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQF---VATT 163
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
LID Y+ I SA KLF + + +N+V+WTS+ISG+ +
Sbjct: 164 LIDVYSGGRAIGSAYKLF--VGMLERNIVAWTSMISGYIL 201
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/439 (31%), Positives = 234/439 (53%), Gaps = 73/439 (16%)
Query: 10 RIHSHLLTTNSLLHH--TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
+IH+H+L TN L +H + +N ++ Y+ + P+ A +Y + Q L D
Sbjct: 212 QIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIAMLQAGI--------LPD 263
Query: 68 SFTYSFLIRTCVTLSYP-NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+T + + ++L+Y +LG QLH+V ++GF+ Y + L+++Y +G L+ + K+F
Sbjct: 264 CYTLPIVFKA-LSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVF 322
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
++ R L +WN +I GL + G + A ++F ++ R +G
Sbjct: 323 EQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKL-------------------RQSG--L 361
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS--------NCLIDTYAK 238
EP + TI++V A G + +H + F ++V+ N LID Y K
Sbjct: 362 EPDDFTIVSVTSACGSLGNLELSLQMHKF-------VFQVKVTGKSNILMLNSLIDMYGK 414
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
CG + A+K+F ++ +N+ SWTS+I G+AMHG K A+ENF+ M++ G+ PN+VTF+
Sbjct: 415 CGRMDLAMKVFSNMG--HRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFV 472
Query: 299 SVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPS 336
VL+AC HGG+ HYGC+VD+L +AG LE+A ++ +P
Sbjct: 473 GVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPM 532
Query: 337 EITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396
+ + ++ L+G C HGNVE+GE + + E+E N G YV++ NI A G + +A++
Sbjct: 533 K-ANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQK 591
Query: 397 LRRVMDERNALKFPGRSLV 415
+R VM +R K PG SL
Sbjct: 592 MRDVMKQRQLAKVPGYSLA 610
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 242/496 (48%), Gaps = 98/496 (19%)
Query: 10 RIHSHLL--TTN---SLLHH-TLLF---NTLLHFYSLADS-PKKAFLLYKQLQQIYT--- 56
+IH H L T+N S+LH T L+ N ++ L D P + +L+ Q+ + Y
Sbjct: 29 KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88
Query: 57 ---------HS--HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
HS H +RP + +TY F+++ C L G ++H+ G +S V+V
Sbjct: 89 PFDGAIDLYHSMLHLGVRP--NKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELE-------------- 151
TALV+ Y G L ++ +LF + R++V WN MI G +G +
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 152 ------------------YARSLFEEMPCRNVVSWTGILDGYT------------RMNRS 181
YAR +F+ M RN VSW+ ++ GY RM +
Sbjct: 207 CPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQL 266
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+G +P T+L VLPA A+++ HGY RGF A D + N LID Y+KCG
Sbjct: 267 SG--IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGF-ATDTLICNALIDMYSKCGK 323
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A ++F ++R ++VSW ++I G+ +HG+G A+ F + +GLKP+ +TF+ +L
Sbjct: 324 ISFAREVFN--RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 381
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
++CSH GL H C+VD+LGRAG +++A +P E
Sbjct: 382 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFE-P 440
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
DV + LL AC H N+E+GE V++K+ + + G++VL+ NI + GR+ DA +R
Sbjct: 441 DVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRI 500
Query: 400 VMDERNALKFPGRSLV 415
+ K PG S +
Sbjct: 501 TQKDWGLKKIPGCSWI 516
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 26/236 (11%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y L+ C+ ++H K + V L +Y+S + + +LFDE+P
Sbjct: 11 YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-GASTEPS 189
+++ WN +I YA W G DG + S P+
Sbjct: 71 NPSVILWNQIIRA--------YA--------------WNGPFDGAIDLYHSMLHLGVRPN 108
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ T VL A A+ + IH + + G + D+ V L+D YAKCG + A +LF
Sbjct: 109 KYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLES-DVFVCTALVDFYAKCGILVEAQRLF 167
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+S +++V+W ++I+G +++G+ AV+ +MQ+ G+ PN T + VL C
Sbjct: 168 SSMS--HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ 221
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 30/238 (12%)
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
L +L A Q+ ++ + IH + K NA D V + L Y C + A +LF++I
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNA-DSSVLHKLTRLYLSCNQVVLARRLFDEIP 70
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC--------- 304
+++ W II +A +G A++ + M +G++PN+ T+ VL AC
Sbjct: 71 --NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128
Query: 305 ----SHGGLH------YGC--LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
SH + + C LVD + G L +A+++ + DVV ++ CS
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR--DVVAWNAMIAGCS 186
Query: 353 FHGNVEMGERVTRKVLEM-ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+G + + + +++M E G + + +L + A ++ VM RN + +
Sbjct: 187 LYG---LCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSW 241
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 191/344 (55%), Gaps = 45/344 (13%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ Y+ +G +K + KLFD +P R+ ++WN M+ G G++E LFEEMP RNV SW
Sbjct: 268 MVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSW 327
Query: 169 TGILDGYTRMNRSNGASTE---------------PSEITILAVLPAIWQNGAVRNCQLIH 213
G++ GY NG E P++ T++ VL A + GA+ + +H
Sbjct: 328 NGLIGGYAH----NGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVH 383
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
Y GF I V N LID Y+KCG I +A+++FE S++ K+L++W S+I G A HG
Sbjct: 384 VYAATIGFKG-SIYVGNALIDMYSKCGLIENAMEVFE--SMDLKDLITWNSMICGLATHG 440
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
G A+ F +M+ G KP+ +TF+ VL +C+H GL HY
Sbjct: 441 CGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHY 500
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VD+ GRAG L++A + +P E D V+ LLGAC + N+++ E +K++ +E
Sbjct: 501 GCMVDLFGRAGLLDRAIEFVKRMPME-ADAVIWAALLGACRIYKNIDLAELALQKLIVLE 559
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N +YVL+ NI +GR+ D RL+ +M + + K PG SL+
Sbjct: 560 PKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLI 603
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
++ C L +LG +H + +GF+ +YV AL++MY G ++++ ++F+ + ++
Sbjct: 366 VLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKD 425
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
L+TWN MI GL G A +LF +M + NG +P IT
Sbjct: 426 LITWNSMICGLATHGCGADALTLFHQM-------------------KING--EKPDGITF 464
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ VL + G V A I C++D + + G + A++ + +
Sbjct: 465 IGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMP 524
Query: 254 VERKNLVSWTSIISG 268
+E + V W +++
Sbjct: 525 ME-ADAVIWAALLGA 538
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 51/298 (17%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L+R+C T++ L ++ A I GFQ + YV +V +V L + + LFD P+
Sbjct: 73 LLRSCKTVA---LLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPK 129
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
+ WN + +R F R VV G + P+ T
Sbjct: 130 VELWNAI------------SRGYFHNAFYREVVFLFG---------KMKSMDVRPNCFTF 168
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
VL + + GA + IH K G N F V+ LID Y+ I SA KLF
Sbjct: 169 PLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQF---VATTLIDVYSGGRAIGSAYKLF-- 223
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311
+ + +N+V+WTS+ISG+ + A F+ L P R L +
Sbjct: 224 VGMLERNIVAWTSMISGYILCNRVALARRLFD------LAPERDVVL------------W 265
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+V G ++ A K+ +P D + +L + +G+VE E++ ++ E
Sbjct: 266 NIMVSGYIEIGDMKAARKLFDTMPYR--DTMSWNTMLNGYANNGDVEACEQLFEEMPE 321
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 211/395 (53%), Gaps = 52/395 (13%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL-GF 118
P RP + F + ++TC LHA I K GF + V TALV+ Y + G
Sbjct: 101 QPPRP--NHFIFPHALKTCPESC---AAESLHAQIVKSGFHEYPVVQTALVDSYSKVSGG 155
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L ++ K+FDE+ +R++V++ M++G + G++E A +F EM R+V SW ++ G T+
Sbjct: 156 LGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQ- 214
Query: 179 NRSNGASTE--------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
NGA T+ P+ +T++ L A G ++ + IHGY K G AF
Sbjct: 215 ---NGAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGL-AF 270
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
D V N L+D Y KCG + A K+FE K L SW S+I+ FA+HG +A+ FE+
Sbjct: 271 DSFVLNALVDMYGKCGSLGKARKVFE--MNPEKGLTSWNSMINCFALHGQSDSAIAIFEQ 328
Query: 285 MQK--VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
M + G++P+ VTF+ +LNAC+HGGL HYGCL+D+LGR
Sbjct: 329 MVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGR 388
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AGR ++A + G+ E D VV LL C HG ++ E +K++E++ NGG ++
Sbjct: 389 AGRFDEAMDVVKGMSME-PDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIM 447
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ N+ +G++ + + R + ++ + K PG S +
Sbjct: 448 LANVYGELGKWDEVRNVWRTLKQQKSYKVPGCSWI 482
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/421 (31%), Positives = 214/421 (50%), Gaps = 45/421 (10%)
Query: 30 TLLHFYSLADSPKKAFLLY-KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
T++ Y AD +A Y + ++ T ++ L L D LI+ C + G
Sbjct: 246 TIIDGYIRADCTSEALRAYVAMMAEVDTRGNAAL--LVD------LIKVCARHAAVLEGQ 297
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
QLH VI K GF +H +V L++ Y S L + F + ++ +WN +++GL+
Sbjct: 298 QLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRN 357
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVLP 198
+ AR LF++MP R+ +SW+ +L GY + SN GA EP+++T+ + L
Sbjct: 358 LMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLS 417
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A+ +G + + IH Y D +S LID YAKCG + A++LF + + +
Sbjct: 418 AVADSGMLEQGRFIHDYIISNSIQLTD-NLSAGLIDMYAKCGSVADAIQLFSHVKHKLSS 476
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+ W +II A+HG ++E F +Q+ +KPN VT++ VLNAC H GL
Sbjct: 477 VSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLNACCHAGLVTEGRHHFE 536
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+LGRAG LE+AE + +P +DVV+ +L A HGN
Sbjct: 537 SMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPMR-SDVVIWGSILAAARTHGN 595
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM--DERNALKFPGRSL 414
V +GE+ ++ +++ +G V + NI A R+ + +R+ + ++ N +F G S
Sbjct: 596 VALGEKAAEELAKIDPNHGASKVALSNIFAEAARWNNVSLVRKELQDEDENMGRFSGSSG 655
Query: 415 V 415
V
Sbjct: 656 V 656
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 155/364 (42%), Gaps = 70/364 (19%)
Query: 75 IRTCVTLSYPNLGTQL-HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
+ T + L P + + H V + G + V T LV+ Y + + + ++F+++P++N
Sbjct: 150 VLTALALERPPVPVGVAHGVTVRRGLNGFLIVATNLVHAYAAASQVCFAREIFEQMPDKN 209
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
VTWN M+ G +K G L A +F +P R+ VSW I+DGY R + ++ A
Sbjct: 210 TVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMA 269
Query: 185 --STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
T + ++ ++ ++ AV Q +H K GF+A V LI Y C +
Sbjct: 270 EVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDAHPF-VQATLIHFYGSCDLL 328
Query: 243 -------------------------------FSALKLFEDISVERKNLVSWTSIISGFAM 271
A +LF+D+ ++ +SW++++SG+
Sbjct: 329 DIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDDMP--ERDTISWSTLLSGYVQ 386
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-LHYG------------------ 312
G A++ F M G++PN VT S L+A + G L G
Sbjct: 387 SGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDNL 446
Query: 313 --CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
L+DM + G + A ++ + +++ V ++ + + HG+ + LE+
Sbjct: 447 SAGLIDMYAKCGSVADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLEL---FLEL 503
Query: 371 ERGN 374
+R N
Sbjct: 504 QRTN 507
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 145/315 (46%), Gaps = 38/315 (12%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSS---KLFDE 128
FL+ + + + G QLHA+ +K G S+ +V +L+ Y L + + LFDE
Sbjct: 11 FLVSSLKSGARLRHGEQLHALAAKSGLLASNTFVRNSLLAFYARLPSPQAPALARHLFDE 70
Query: 129 LPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+P R+ N ++ L + G L+ A+ + EMP R+ VS+T +L R + A
Sbjct: 71 IPLALRDPAAHNTLLASLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAEDAVA 130
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P+E+T+ VL A+ + HG +RG N F I +N L+ Y
Sbjct: 131 VFRGMLAQDVPPNEVTLAGVLTALALERPPVPVGVAHGVTVRRGLNGFLIVATN-LVHAY 189
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-- 294
A + A ++FE + KN V+W ++++G+ GM A E F R+ P R
Sbjct: 190 AAASQVCFAREIFEQMP--DKNTVTWNAMLNGYLKAGMLPMAAEVFGRI------PERDA 241
Query: 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
V++L++++ G + C + L RA AE G + + D L+ C+ H
Sbjct: 242 VSWLTIID----GYIRADCTSEAL-RAYVAMMAEVDTRGNAALLVD------LIKVCARH 290
Query: 355 GNVEMGERVTRKVLE 369
V G+++ +L+
Sbjct: 291 AAVLEGQQLHTVILK 305
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/422 (31%), Positives = 217/422 (51%), Gaps = 45/422 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y ++A +Y+++Q S +P + T + C L LG
Sbjct: 177 WNIMISGYVRCKRFEEAVDVYRRMQM-----ESNEKP--NEATVVSTLSACAVLRNLELG 229
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H I+ + + N AL++MY G + + ++FD + +N+ W M+TG V
Sbjct: 230 KEIHDYIANELDLTPIMGN-ALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVIC 288
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G+L+ AR LFE P R+VV WT +++GY + N A EP + ++ +L
Sbjct: 289 GQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLL 348
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
Q GA+ + IH Y ++ D VS LI+ YAKCGCI +L++F ++
Sbjct: 349 TGCAQLGALEQGKWIHNYIDENRIK-MDAVVSTALIEMYAKCGCIEKSLEIFN--GLKDM 405
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ SWTSII G AM+G A+E FE MQ GLKP+ +TF++VL+AC H GL
Sbjct: 406 DTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLF 465
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV--RRILLGACSF 353
HYGC +D+LGRAG L++AE++ +P + +++V LL AC
Sbjct: 466 HSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRT 525
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+GN++MGER+ + +++ + + L+ +I A R+ D ++R M + K PG S
Sbjct: 526 YGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYS 585
Query: 414 LV 415
+
Sbjct: 586 AI 587
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 211/505 (41%), Gaps = 149/505 (29%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLF--NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
N RI +H+ HH LF N ++ + S + A L++QL++ R
Sbjct: 59 NYANRIFNHI-------HHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRE---------R 102
Query: 64 PLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
++ D++TY ++++ + G ++HA + K G + YV +L++MY LG ++
Sbjct: 103 GVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGF 162
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+++F+E+PER+ V+WN+MI+G V+ E A +D Y RM
Sbjct: 163 TQVFEEMPERDAVSWNIMISGYVRCKRFEEA------------------VDVYRRMQME- 203
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIR--VSNCLIDTYA 237
++ +P+E T+++ L A +RN +L IH Y N D+ + N L+D Y
Sbjct: 204 -SNEKPNEATVVSTLSAC---AVLRNLELGKEIHDYIA----NELDLTPIMGNALLDMYC 255
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER------------- 284
KCGC+ A ++F+ + V KN+ WTS+++G+ + G A FER
Sbjct: 256 KCGCVSVAREIFDAMIV--KNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMI 313
Query: 285 ------------------MQKVGLKPNRVTFLSVLNACSH-GGLHYG------------- 312
MQ G++P++ +++L C+ G L G
Sbjct: 314 NGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIK 373
Query: 313 -------CLVDMLGRAGRLEQAEKIALGI------------------------------- 334
L++M + G +E++ +I G+
Sbjct: 374 MDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAM 433
Query: 335 ------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME--RGNGGDYVLMYNILA 386
P +IT V V L AC G VE G ++ + + N Y ++L
Sbjct: 434 QTCGLKPDDITFVAV----LSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLG 489
Query: 387 GVGRYVDAERL-RRVMDERNALKFP 410
G +AE L +++ D+ N + P
Sbjct: 490 RAGLLQEAEELVKKLPDQNNEIIVP 514
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 30/239 (12%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV--NMYVSLGFLKDSSKLFD 127
TY L+++C ++S Q+ A I G Q + L+ +M SLG ++++F+
Sbjct: 10 TYISLLKSCKSMSQLK---QIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFN 66
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ +L +N+MI VK G L A SLF+++ R V W
Sbjct: 67 HIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGV--W------------------- 105
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T VL I G VR + IH + K G FD V N L+D YA+ G + +
Sbjct: 106 PDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLE-FDPYVCNSLMDMYAELGLVEGFTQ 164
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGLKPNRVTFLSVLNACS 305
+FE++ ++ VSW +ISG+ + AV+ + RMQ + KPN T +S L+AC+
Sbjct: 165 VFEEMP--ERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACA 221
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/454 (31%), Positives = 221/454 (48%), Gaps = 67/454 (14%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP-------------------- 64
T +NTLL FYS +A+ L+ ++ Q S++ L
Sbjct: 144 TRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQN 203
Query: 65 -----LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
+ D FT L+ C L Q+H V + VGF++++ +N AL++ Y G
Sbjct: 204 GVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEP 263
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
S LF + E++ V+W M+ + ++ A +F EMP + VSW ++ G+ +
Sbjct: 264 NSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNG 323
Query: 180 RSNGA----------STEPSEITILAVLPAIWQN-----GAVRNCQLIHGYGEKRGFNAF 224
R A P T ++VL A G +CQ+I G + N F
Sbjct: 324 RCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRG---RSSDNLF 380
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
++ V N L+D YAKCG + SA LFE + + K++VSW ++I+GFA +G G+ ++ F+R
Sbjct: 381 NVYVFNALMDMYAKCGDMKSAENLFE-MMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDR 439
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M + ++PN VTFL VL+AC+H GL HY L+D+LGR
Sbjct: 440 MIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKN 499
Query: 323 RLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
RLE+A + +P+EI++ + + +LG C HGN+E+ + + +E N G YV++
Sbjct: 500 RLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPENTGRYVML 559
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A GR+ D R+R VM ER K P S +
Sbjct: 560 SNIYAASGRWSDTNRIRNVMKERGLKKEPAFSRI 593
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 156/366 (42%), Gaps = 71/366 (19%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+S LI CV+ G LH+ + K ++ L+++Y G + K FD+LP
Sbjct: 81 FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 140
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-----------MN 179
+ TWN +++ K G A LF+EMP RN+VS+ ++ G TR
Sbjct: 141 NKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFRE 200
Query: 180 RSNG-ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
NG E T+++++ V+ + +HG GF ++ ++N LID Y K
Sbjct: 201 MQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRT-NLILNNALIDAYGK 259
Query: 239 CG------CIF-------------------------SALKLFEDISVERKNLVSWTSIIS 267
CG C+F A K+F ++ V K VSW ++IS
Sbjct: 260 CGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPV--KYTVSWAALIS 317
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------H---------- 310
GF +G A+E F +M K G+ P TF+SVL+AC+ L H
Sbjct: 318 GFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSD 377
Query: 311 -------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
+ L+DM + G ++ AE + + + DVV L+ + +G E V
Sbjct: 378 NLFNVYVFNALMDMYAKCGDMKSAENL-FEMMIHVKDVVSWNTLITGFAQNGRGEDSLAV 436
Query: 364 TRKVLE 369
+++E
Sbjct: 437 FDRMIE 442
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 38/380 (10%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S T S + C L+ LG LHA K+ YV TAL+ MY G + LFD
Sbjct: 133 SHTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD 189
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P+ ++V M+T K G L+ AR LF+ MP ++ + W ++DGYT+ R N A
Sbjct: 190 EMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRL 249
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+P E+ I+ L A+ Q G + + +H Y + + RV LID Y
Sbjct: 250 FRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYC 309
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + A+ +F S+ K++V W ++I+G+AMHG + A+E F +++ GL P +TF
Sbjct: 310 KCGSLEDAVSVFN--SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITF 367
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ +LNACSH GL HYGC+VD+LGRAG +E+A + +
Sbjct: 368 IGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSM- 426
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ D V+ LL AC H N+ +G+++ ++ N G Y+L+ NI A VG + +
Sbjct: 427 TIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVA 486
Query: 396 RLRRVMDERNALKFPGRSLV 415
R+R +M K PG S +
Sbjct: 487 RVRSMMKASGIQKEPGCSAI 506
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 38/380 (10%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S T S + C L+ LG LHA K+ YV TAL+ MY G + LFD
Sbjct: 132 SHTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD 188
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P+ ++V M+T K G L+ AR LF+ MP ++ + W ++DGYT+ R N A
Sbjct: 189 EMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRL 248
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+P E+ I+ L A+ Q G + + +H Y + + RV LID Y
Sbjct: 249 FRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYC 308
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + A+ +F S+ K++V W ++I+G+AMHG + A+E F +++ GL P +TF
Sbjct: 309 KCGSLEDAVSVFN--SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITF 366
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ +LNACSH GL HYGC+VD+LGRAG +E+A + +
Sbjct: 367 IGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSM- 425
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ D V+ LL AC H N+ +G+++ ++ N G Y+L+ NI A VG + +
Sbjct: 426 TIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVA 485
Query: 396 RLRRVMDERNALKFPGRSLV 415
R+R +M K PG S +
Sbjct: 486 RVRSMMKASGIQKEPGCSAI 505
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 235/451 (52%), Gaps = 56/451 (12%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
++H + + +NT++ +S +D K + + + P R FT+
Sbjct: 70 YAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNR-----FTF 124
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELP 130
+++ C G Q+H + K GF +V + LV MYV G +KD+ LF +
Sbjct: 125 PSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNII 184
Query: 131 ERNLVT-------------WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
ER +V WNVMI G ++ G+ + AR LF++M R+VVSW ++ GY++
Sbjct: 185 EREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQ 244
Query: 178 -----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
G P+ +T+++VLPA+ + G++ + +H Y E G D+
Sbjct: 245 NGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDV 304
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ + LID Y+KCG I A+ +FE + R+N+++W+++I+GFA+HG A++ F +M+
Sbjct: 305 -LGSALIDMYSKCGIIEKAIMVFE--RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR 361
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
+ G++P+ V ++++L ACSH GL HYGC+VD+LGR G L
Sbjct: 362 QAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLL 421
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
++AE+ L +P + DV+ + LLGAC H NVEMG+RV +++M + G YV + N+
Sbjct: 422 DEAEEFILNMPIKPDDVIW-KALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNM 480
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A G + + +R M E + K PG S +
Sbjct: 481 YASQGNWSEVSEMRLRMKEMDIRKDPGCSWI 511
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 115/286 (40%), Gaps = 81/286 (28%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-------------ASTEPSEITILA 195
+L+YA +F +MP RN SW I+ G++ + EP+ T +
Sbjct: 67 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A + G ++ + IHG K GF + +SN L+ Y CG + A LF +E
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSN-LVRMYVICGLMKDACVLFYKNIIE 185
Query: 256 R-------------------------------------------KNLVSWTSIISGFAMH 272
R +++VSW ++ISG++ +
Sbjct: 186 REMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQN 245
Query: 273 GMGKAAVENFERMQK-VGLKPNRVTFLSVLNACSH-GGLHYG------------------ 312
G K AVE F M+K ++PN VT +SVL A S G L G
Sbjct: 246 GFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVL 305
Query: 313 --CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G +E+A + +P E +V+ ++ + HG
Sbjct: 306 GSALIDMYSKCGIIEKAIMVFERLPRE--NVITWSAMINGFAIHGQ 349
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 230/461 (49%), Gaps = 59/461 (12%)
Query: 1 SPSSNNVTTRIHSHLL--TTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS 58
S S++NV + +L TN T FNT++ Y+L + L Q+ +
Sbjct: 470 SASTSNVVVSYATSVLRFITNP---STFCFNTIIRIYTLHEP------LSLSSQRFFVEM 520
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSL 116
P D TY F+ + C +L LH + G S ++ L+ Y +
Sbjct: 521 RRRSVPP-DFHTYPFVFKACAAKKNGDLSLVKTLHCQALRFGLLSDLFTLNTLIRAYSLM 579
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
+ + +LFDE P+R++VT+NV+I GLVK E+ AR LF+ MP R++VSW ++ GY
Sbjct: 580 APIGSALQLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYA 639
Query: 177 RMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
+MN+ G +P + I++ L A Q+G + + IH Y +K+ D
Sbjct: 640 QMNQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRL-FIDS 698
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
++ L+D YAKCG I +A+++F S K L +W ++I+G AMHG G+ V+ F +M
Sbjct: 699 FLATGLVDFYAKCGFIDTAMEIFHLSS--DKTLFTWNAMITGLAMHGNGELTVDYFHKMV 756
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
G+KP+ V+F+SVL CSH GL HYGC+ D+LGRAG +
Sbjct: 757 SSGIKPDGVSFISVLVGCSHSGLVGEARKLFDQMRSLYDVDREMKHYGCMADLLGRAGLI 816
Query: 325 EQAEKIALGIPSE---ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
E+A ++ +P + ++ LLG C HGN+E+ E+ ++V + +GG Y +M
Sbjct: 817 EEAAEMIEQMPKDGGKREKLLAWSGLLGGCRIHGNIEVAEKAAKRVKALSPEDGGVYKVM 876
Query: 382 YNILAGVGRYVDA-------ERLRRVMDERNALKFPGRSLV 415
+ A R+ D ER ++V+ E F GR +V
Sbjct: 877 VEMYANAERWEDVVKVREMIERDKKVLYESFDEPFDGRWIV 917
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 228/428 (53%), Gaps = 54/428 (12%)
Query: 31 LLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQL 90
++ +S +++P K LY ++ + + P + FTYSFLI C G Q+
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVE------AEAEP--NEFTYSFLIGGCARSRLLREGEQV 52
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGF---LKDSSKLFDELPERNLVTWNVMITGLVKW 147
H + G+ ++V+V T+LVN+Y G ++ + ++FDE+ +RN+V+WN ++ G V+
Sbjct: 53 HGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRC 112
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEITILAVL 197
G+++ AR +F+EMP RNVVSWT ++ G ++ R A + ++ ++A L
Sbjct: 113 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAAL 172
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A + G ++ IH Y ++R G + ++N LI YA CG I A K+F I +
Sbjct: 173 SACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVF--IGM 230
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL---KPNRVTFLSVLNACSHGGL-- 309
++++ +SWTS+I+GFA G + A+ F+ MQ++G +P+ +TF+ VL ACSH G
Sbjct: 231 QQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVD 290
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+L RAG L++A ++ +P + D V LLG
Sbjct: 291 QGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVW-GALLG 349
Query: 350 ACSFHGNVEMGERVTRKV-LEMERGNGGDY-VLMYNILAGVGRYVDAERLRRVMDERNAL 407
C H N E+ V +K+ LE++ Y VL+ N+ A R+ D +R+ M E
Sbjct: 350 GCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVR 409
Query: 408 KFPGRSLV 415
K GRS V
Sbjct: 410 KPAGRSWV 417
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 234/498 (46%), Gaps = 109/498 (21%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF--- 66
+ H+HL+ + L H LL +L SP + L + + I+ H+H+P +F
Sbjct: 29 QAHAHLIVSG-LASHPFTVTRLLACAAL--SPSASDLPHAK--TIFLHTHNPSPFMFNTI 83
Query: 67 ------------------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
D+FT+ FLI++ LG QLHA + K G
Sbjct: 84 IMASSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRD 143
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDE--------------------------------LP 130
V+V ++ +Y S L+ + K+FDE +P
Sbjct: 144 VFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMP 203
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-------- 182
+N V+WN MI+G + AR LF+EMP R+ SW+ ++ GY+++ N
Sbjct: 204 LKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFME 263
Query: 183 ---GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
G P+E +++ + A Q A+ + +H Y +++ ++ + L+D Y KC
Sbjct: 264 MVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLR-INVTLGTVLLDMYGKC 322
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G I A +F +S +N+ SW S+I+G A++G GK A+ F +MQ VG PN +TF++
Sbjct: 323 GSILDAAGVFNLMS--ERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIA 380
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA----EKIALG 333
+L CSH GL HYGC+VD+LGRAG +++A EK+ +
Sbjct: 381 LLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMK 440
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
SE+ +V GAC HG VE+GE + ++++++E +GG Y L+ NI A R+ D
Sbjct: 441 PHSELWGALV-----GACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDD 495
Query: 394 AERLRRVMDERNALKFPG 411
+R + R LK PG
Sbjct: 496 VAMVRDLEKGRKVLKNPG 513
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/426 (30%), Positives = 220/426 (51%), Gaps = 52/426 (12%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ L P Y L L+P D++TY+F+++ C
Sbjct: 53 FVYNTMIRGLMLGKRP------YDSLLLFNELLLGCLKP--DNYTYTFVLKACSNQKALP 104
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H I K G + +++++L++MY S G + ++ + E E N + N MI+G +
Sbjct: 105 EGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYL 164
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE--------------PSEI 191
G ++ AR++F++M ++V SW+ I+ G T+ NG TE P+E
Sbjct: 165 SKGHVDKARAMFDQMKAKDVASWSAIITGCTK----NGMHTEALALFEDMMVSHTLPNES 220
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
++++L A GA+ + IH Y ++ G + IR+S LID YAKCG I S K F
Sbjct: 221 ALVSLLSACAHLGALHQGRWIHAYIDRIGAD-MSIRLSTALIDMYAKCGDIQSGYKFFRK 279
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ R+++V+W +IISGFA++G K E FE M G+ PN V F+++L+ACSH G
Sbjct: 280 MP--RRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSACSHAGYVE 337
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAGRL++AE+ + +P E + V+ +L
Sbjct: 338 EGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISMP-EKPNSVIWGSMLS 396
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC H ++ G R ++E+E +G Y L + G +A ++R++++++
Sbjct: 397 ACRTHNDLNRGSWAFRHLIELEPRSGDRYKLAGLMFGNAGEKQEATKIRKMIEDQGMETT 456
Query: 410 PGRSLV 415
G S +
Sbjct: 457 SGSSFI 462
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 120/307 (39%), Gaps = 47/307 (15%)
Query: 89 QLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLHA G H L+ YV++ + + +F+ +P ++ +N MI GL+
Sbjct: 6 QLHAQFVVSGLLNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLM-L 64
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYT-----RMNRSNGASTEPSEITILAVLPAIWQ 202
G+ Y L + D YT + + A E ++ + I
Sbjct: 65 GKRPYDSLLLFNELLLGCLK----PDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISP 120
Query: 203 NGAVRNCQLIHGYGEK----------RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
N + + LIH Y R F+ + N +I Y G + A +F+ +
Sbjct: 121 NTHIHS-SLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQM 179
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHY 311
K++ SW++II+G +GM A+ FE M PN +S+L+AC+H G LH
Sbjct: 180 KA--KDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQ 237
Query: 312 G--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
G L+DM + G ++ K +P D+V ++
Sbjct: 238 GRWIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRR--DIVTWGAIISGF 295
Query: 352 SFHGNVE 358
+ +G +
Sbjct: 296 AIYGQAK 302
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 210/395 (53%), Gaps = 39/395 (9%)
Query: 54 IYTHS-HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
+++H+ S RP D F + L +G+ +H +I + G S + V ALV+M
Sbjct: 106 VFSHAIASGHRP--DGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDM 163
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y G + + +FD + ++ VTW M+ G +K ++ A S F +MP ++ VSWT ++
Sbjct: 164 YCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALI 223
Query: 173 DGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
G+ + + A P+ ITI+ VL A GA+ + IHGYG K
Sbjct: 224 TGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNAT 283
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+I V+N L+D YAK G I SA +FE+ V+ K+ +WT++IS F + G G+ AVE F
Sbjct: 284 T-NIIVTNALMDMYAKSGSIASAFSVFEE--VQMKDAFTWTTMISSFTVQGNGRKAVELF 340
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
M + G+ PN VTF+SVL+ACSH GL HYGC+VD+LGR
Sbjct: 341 WDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGR 400
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
G LE+AE + + E D+V+ R LL AC HGN + E ++++ E G+ G YVL
Sbjct: 401 GGLLEEAEALIDHMDVE-PDIVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVL 459
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++N+ A R+ +A +R+ M R K PG S +
Sbjct: 460 LWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWI 494
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 51/233 (21%)
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
++ + Y G D+ +LFDE+P +++++ +++ +K A S+F
Sbjct: 55 ISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH----- 109
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
I G+ P + L A G R ++HG + G ++
Sbjct: 110 -----AIASGH-----------RPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDS- 152
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVER---------------------------- 256
++ V N L+D Y +CG A +F+ + V+
Sbjct: 153 ELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMP 212
Query: 257 -KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
K+ VSWT++I+G A+E F +M G +PN +T + VL+AC+ G
Sbjct: 213 MKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIG 265
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 36/378 (9%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
TY ++ C Y LG Q+H + G + V AL++MY + + +LF+ +
Sbjct: 125 TYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGM 184
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----- 184
RN V+W +I+G ++ G+++ AR+LF+ MP R+ VSWT ++DGY + + A
Sbjct: 185 EVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFR 244
Query: 185 -----STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
E T+++V+ A Q GA+ + Y + G D V N L+D Y+KC
Sbjct: 245 EMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIK-MDTFVGNALVDMYSKC 303
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G I AL +F+++ + K +WT++I G A++G G+ A+ F RM +V P+ VTF+
Sbjct: 304 GSIQQALGVFKEMYIRDK--FTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIG 361
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
VL AC+H GL H+GCL+D+LGRAG+L++A + +P
Sbjct: 362 VLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMR 421
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
+ + LL AC HGN E+G+ +LE++ NG Y+L+ N+ A R+ D RL
Sbjct: 422 -PNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRL 480
Query: 398 RRVMDERNALKFPGRSLV 415
R+V+ E+ K PG SL+
Sbjct: 481 RQVIMEKGIKKEPGCSLI 498
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 138/340 (40%), Gaps = 102/340 (30%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPN-LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
RP D++T+ L++ + +G +HA + K G + + +V ++LV MY + G
Sbjct: 15 RP--DAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAV 72
Query: 122 SSKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW--TGILDGYT 176
+ L D P R V WN +I+G + RS + C + V TG++
Sbjct: 73 ARTLLDAWPARGGDTPVVWNALISG--------HRRSRQFRLSCCSFVDMVRTGVV---- 120
Query: 177 RMNRSNGASTEPSEITILAVLPA------IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
P+ +T + VL A IW V C + G D++V N
Sbjct: 121 -----------PTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLP-------DLKVGN 162
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF--------------------- 269
LID YA+C + +A +LFE + V +N VSWTS+ISGF
Sbjct: 163 ALIDMYAECSEMDAAWELFEGMEV--RNTVSWTSVISGFLRLGQVDQARTLFDCMPERDT 220
Query: 270 ----------AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------ 312
G + A+E F MQ ++ + T +SV+ AC+ G L G
Sbjct: 221 VSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIY 280
Query: 313 --------------CLVDMLGRAGRLEQAEKIALGIPSEI 338
LVDM + G ++Q ALG+ E+
Sbjct: 281 MSRHGIKMDTFVGNALVDMYSKCGSIQQ----ALGVFKEM 316
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 43/266 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+ + ++ Y A ++A +++++Q S +R D FT ++ C L
Sbjct: 220 TVSWTAMIDGYVQAGQFREALEMFREMQ------FSKVRA--DEFTMVSVVTACAQLGAL 271
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G +S+ G + +V ALV+MY G ++ + +F E+ R+ TW +I GL
Sbjct: 272 ETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGL 331
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G E A ++F RM R A P E+T + VL A G
Sbjct: 332 AVNGHGEEAINMF------------------YRMLRVFEA---PDEVTFIGVLTACTHAG 370
Query: 205 AVRNCQ-----LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
V + + YG F CLID + G + AL+ ++ + R N
Sbjct: 371 LVDKGRDFFLSMTGSYGIAPNVMHF-----GCLIDLLGRAGKLKEALETIGNMPM-RPNS 424
Query: 260 VSWTSIISGFAMHG---MGKAAVENF 282
W ++++ +HG +G+ A E+
Sbjct: 425 AIWGTLLAACRVHGNSEIGQLAAEHL 450
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 206/380 (54%), Gaps = 36/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
+ T ++ C L G ++H+ + +S++ + A+++MY G + + +F
Sbjct: 240 TVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFR 299
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
+ R++++W +++G GE++ AR+ F++MP ++ VSWT ++DGY R NR A
Sbjct: 300 SMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALEL 359
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+ +P E T+++VL A GA+ + I Y ++ D+ V N LID Y
Sbjct: 360 FRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-DLFVRNALIDMYF 418
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + A +F ++S +++ +WT++I G A++G G+ A++ F M K + P+ +T+
Sbjct: 419 KCGDVDKAESIFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITY 476
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL+AC+H GL HYGCLVD+L RAGRL++A ++ +P
Sbjct: 477 IGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMP 536
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ + +V LL C + +M E V +++LE+E NG YVL+ NI A R+ D
Sbjct: 537 IK-ANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLR 595
Query: 396 RLRRVMDERNALKFPGRSLV 415
LR++M ++ K PG SL+
Sbjct: 596 ELRQMMMDKGIKKXPGCSLI 615
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 161/355 (45%), Gaps = 80/355 (22%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ YS D P+ LY ++ + ++P D +T+ FL +
Sbjct: 105 FIWNTMIRGYSRLDFPQLGVSLYLEMLR------RGVKP--DRYTFPFLFKGFTRDIALE 156
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH + K G Q +V+V+TALV MY+ G L + +FD P+ +++TWN++I+
Sbjct: 157 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 216
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K G+ E +R LF M + V+ P+ +T++ VL A +
Sbjct: 217 KVGKFEESRRLFLVMEDKQVL---------------------PTTVTLVLVLSACSKLKD 255
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE--------------- 250
+R + +H Y + + ++ + N +ID YA CG + SAL +F
Sbjct: 256 LRTGKKVHSYVKNCKVES-NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVS 314
Query: 251 ------DISVER--------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+I V R K+ VSWT++I G+ K A+E F MQ +KP+ T
Sbjct: 315 GFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFT 374
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
+SVL AC+H G L G L+DM + G +++AE I
Sbjct: 375 MVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 429
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 32/242 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ ++ Y ++ K+A L++ +Q + ++P D FT ++ C L LG
Sbjct: 340 WTAMIDGYIRSNRFKEALELFRNMQA------TNVKP--DEFTMVSVLTACAHLGALELG 391
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ I + ++ ++V AL++MY G + + +F E+ +R+ TW MI GL
Sbjct: 392 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN 451
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G E A +F M AS P EIT + VL A G V
Sbjct: 452 GHGEKALDMFSNML---------------------KASILPDEITYIGVLSACTHTGLVD 490
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + + G +I CL+D A+ G + A ++ E++ + + N + W +++
Sbjct: 491 KGRKYFLRMTSQHGIEP-NIAHYGCLVDLLARAGRLKEAYEVIENMPI-KANSIVWGALL 548
Query: 267 SG 268
+G
Sbjct: 549 AG 550
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 37/280 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
F TLLH + PK+ + + + S P PL L+ TC ++
Sbjct: 7 FRTLLH-HRHVKKPKQMTTIAATSSALKSFS-PPTHPLIS------LLETCESMDQLQ-- 56
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVS--LGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+H K G ++ + ++ + G + + +LFDE+PE NL WN MI G
Sbjct: 57 -QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYS 115
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ + SL+ EM R V +P T + ++ A
Sbjct: 116 RLDFPQLGVSLYLEMLRRGV---------------------KPDRYTFPFLFKGFTRDIA 154
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +HG+ K G +++ V L+ Y CG + +A +F+ + ++++W I
Sbjct: 155 LEYGRQLHGHVLKHGLQ-YNVFVHTALVQMYLLCGQLDTARGVFD--VCPKADVITWNMI 211
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
IS + G + + F M+ + P VT + VL+ACS
Sbjct: 212 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 251
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 213/393 (54%), Gaps = 43/393 (10%)
Query: 60 SPLRPLFDSFTYSFLIRTCV-----TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV 114
SP P + T ++ C L+ P L LHA K+ F SH+ ++T L Y+
Sbjct: 61 SPAAPAPNDVTLLTVLSACADSPSSPLASP-LALTLHARALKL-FPSHLLLSTCLARFYL 118
Query: 115 SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
+ + +LFD +P R++VT+N MI+GL++ G ++ A +F+ MP + VSWT ++DG
Sbjct: 119 ASRLPHLALQLFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDG 178
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ + R + A E IT++AV+ A + GA+ +H ++
Sbjct: 179 FVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLER- 237
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
++RV+N LID YA+CG + A ++F S+ ++ +VSW S+I GFA +G A+E FE
Sbjct: 238 NVRVANSLIDMYARCGQVNLAAQVFR--SIRKRTVVSWNSMIVGFAANGRCTDAIELFEE 295
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M++ G KP+ VT VL ACSH GL HYGC+VD+LGRAG
Sbjct: 296 MRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAG 355
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
RL++A + +P +VV+ +L G C HGN++M E++ + + E++ +YVL+
Sbjct: 356 RLDEAMHVVETMPMRPNEVVLGALLAG-CRTHGNLDMAEQMMQHLFELDPQGDANYVLLS 414
Query: 383 NILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A VG++ A ++R +M R K PG S V
Sbjct: 415 NIYAAVGKWDGAGKVRSLMKARGVKKRPGHSTV 447
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 197/374 (52%), Gaps = 34/374 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L+ C L+ G QLH ++ K GF + ++ T +++ Y + G + + F+ + +
Sbjct: 539 LVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDH 598
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------G 183
L +WN +++G +K ++ AR +F++MP R+V SW+ ++ GY + ++S
Sbjct: 599 LESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVA 658
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+ +P+E+T+++V AI G ++ + H Y D + LID YAKCG I
Sbjct: 659 SGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLND-NLRAALIDMYAKCGSIN 717
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
SAL+ F I + ++ W +II G A HG ++ F MQ+ +KPN +TF+ VL+A
Sbjct: 718 SALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSA 777
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C H GL HYGC+VD+LGRAG LE+AE++ +P + D+
Sbjct: 778 CCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMK-ADI 836
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ LL AC HG+V +GER + + +GG VL+ NI A GR+ D +RR +
Sbjct: 837 VIWGTLLAACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAI 896
Query: 402 DERNALKFPGRSLV 415
+ + PG S V
Sbjct: 897 QNQRMERMPGCSGV 910
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 44/255 (17%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
+HA+ K+ + V V+T L+ Y + ++ +LFD +PE NLV+WNVM+ G K G
Sbjct: 423 IHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGL 482
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
++ AR LFE +P ++V+SW ++DGY MNR + A +EI ++ ++ A
Sbjct: 483 VDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSA 542
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG-----C------------- 241
+ A+ + +HG K+GF+ ++ + +I YA CG C
Sbjct: 543 CGRLNAIGDGWQLHGMVVKKGFDCYNF-IQTTIIHFYAACGMMDLACLQFEVGAKDHLES 601
Query: 242 -------------IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
+ A K+F+D+ +++ SW+++ISG+A + A+E F +M
Sbjct: 602 WNALVSGFIKNRMVDQARKIFDDMP--ERDVFSWSTMISGYAQTDQSRIALELFHKMVAS 659
Query: 289 GLKPNRVTFLSVLNA 303
G+KPN VT +SV +A
Sbjct: 660 GIKPNEVTMVSVFSA 674
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 114/211 (54%), Gaps = 17/211 (8%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G QLH+++ K+G S+ ++ +L+NMY G +KD+ LFD P N ++ N+M+ G K
Sbjct: 288 GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK 347
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSNGASTEPSEITIL 194
G+L+ AR LF+ MP + VS+T ++ G + RS+G P+++T++
Sbjct: 348 AGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVV--PNDLTLV 405
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
V+ A G + NC++IH K + VS L+ Y C + A +LF+ +
Sbjct: 406 NVIYACSHFGEILNCRMIHAIAIKLFVEGL-VLVSTNLMRAYCLCSGVGEARRLFD--RM 462
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
NLVSW +++G+A G+ A E FER+
Sbjct: 463 PEVNLVSWNVMLNGYAKAGLVDMARELFERV 493
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N ++ YAK G + +A KLF DI + K VS+T++I G + + A+E F+ M+ G
Sbjct: 339 NIMVCGYAKAGQLDNARKLF-DI-MPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDG 396
Query: 290 LKPNRVTFLSVLNACSHGGLHYGC 313
+ PN +T ++V+ ACSH G C
Sbjct: 397 VVPNDLTLVNVIYACSHFGEILNC 420
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 208/386 (53%), Gaps = 39/386 (10%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D++++ F+++ C LS + G ++H+ K+G V+V AL++ + S G ++ +
Sbjct: 7 LPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARA 66
Query: 125 LFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+FD LP R++V+WN MI+G ++ E A +F+ +P RN V WT ++ GY + +
Sbjct: 67 VFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFK 126
Query: 183 GASTEPSEI----------TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
A E+ TI VL A GA+ + IH Y E+ D+ N L
Sbjct: 127 EAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIE-MDLNARNAL 185
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LK 291
I Y+KCG I AL++F ++ + ++ SW+++ISG AM+G A+ F +M+ + ++
Sbjct: 186 IGMYSKCGDIQKALEIFHGLT--QPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIR 243
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
PN +TFL VL AC+HGG HYGC+VD+LGRA L +AEK
Sbjct: 244 PNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEK 303
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+P + DVV+ R LL AC HGN+E+ E +++ E+E G VL+ N+ A
Sbjct: 304 FIRTLPIQ-PDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASAS 362
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
R+ D +R+R+ M + K PG S V
Sbjct: 363 RWGDVKRVRKDMATQRIKKQPGCSFV 388
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/492 (29%), Positives = 236/492 (47%), Gaps = 104/492 (21%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQI--------------Y 55
+ H+ +L T L H T + L+ F + PK + L +I Y
Sbjct: 57 QAHAFMLKTG-LFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAY 115
Query: 56 THSHSP-----------LRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103
+S +P L P+F D ++++F+++ C G Q+H + K G + V
Sbjct: 116 ANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDV 175
Query: 104 YVNTALVNMY-------------------------------VSLGFLKDSSKLFDELPER 132
+V LVN+Y + G + ++ LFDE+ ER
Sbjct: 176 FVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEER 235
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRSN 182
N+ +WN MI+G G ++ A+ +F+ MP R+VVSW ++ Y + N+
Sbjct: 236 NVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKML 295
Query: 183 GASTE-PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
STE P T+++VL A G++ + +H Y +K G + ++ L+D Y+KCG
Sbjct: 296 DDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIE-IEGFLATALVDMYSKCGK 354
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I AL++F S ++++ +W SIIS ++HG+GK A+E F M G KPN +TF+ VL
Sbjct: 355 IDKALEVFRATS--KRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVL 412
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+AC+H G+ HYGC+VD+LGR G++E+AE++ IP++
Sbjct: 413 SACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEA 472
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY-------- 391
+++ LLGAC G +E ER+ ++LE+ + Y M N+ A GR+
Sbjct: 473 SILLES-LLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRR 531
Query: 392 -VDAERLRRVMD 402
+ AER+ R +D
Sbjct: 532 NMRAERVNRSLD 543
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 206/380 (54%), Gaps = 36/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
+ T ++ C L G ++H+ + +S++ + A+++MY G + + +F
Sbjct: 219 TVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFR 278
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
+ R++++W +++G GE++ AR+ F++MP ++ VSWT ++DGY R NR A
Sbjct: 279 SMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALEL 338
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+ +P E T+++VL A GA+ + I Y ++ D+ V N LID Y
Sbjct: 339 FRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-DLFVRNALIDMYF 397
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + A +F ++S +++ +WT++I G A++G G+ A++ F M K + P+ +T+
Sbjct: 398 KCGDVDKAESIFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITY 455
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL+AC+H GL HYGCLVD+L RAGRL++A ++ +P
Sbjct: 456 IGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMP 515
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ + +V LL C + +M E V +++LE+E NG YVL+ NI A R+ D
Sbjct: 516 IK-ANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLR 574
Query: 396 RLRRVMDERNALKFPGRSLV 415
LR++M ++ K PG SL+
Sbjct: 575 ELRQMMMDKGIKKTPGCSLI 594
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 161/355 (45%), Gaps = 80/355 (22%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ YS D P+ LY ++ + ++P D +T+ FL +
Sbjct: 84 FIWNTMIRGYSRLDFPQLGVSLYLEMLR------RGVKP--DRYTFPFLFKGFTRDIALE 135
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH + K G Q +V+V+TALV MY+ G L + +FD P+ +++TWN++I+
Sbjct: 136 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 195
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K G+ E +R LF M + V+ P+ +T++ VL A +
Sbjct: 196 KVGKFEESRRLFLVMEDKQVL---------------------PTTVTLVLVLSACSKLKD 234
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE--------------- 250
+R + +H Y + + ++ + N +ID YA CG + SAL +F
Sbjct: 235 LRTGKKVHSYVKNCKVES-NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVS 293
Query: 251 ------DISVER--------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+I V R K+ VSWT++I G+ K A+E F MQ +KP+ T
Sbjct: 294 GFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFT 353
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
+SVL AC+H G L G L+DM + G +++AE I
Sbjct: 354 MVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 408
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 32/242 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ ++ Y ++ K+A L++ +Q + ++P D FT ++ C L LG
Sbjct: 319 WTAMIDGYIRSNRFKEALELFRNMQA------TNVKP--DEFTMVSVLTACAHLGALELG 370
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ I + ++ ++V AL++MY G + + +F E+ +R+ TW MI GL
Sbjct: 371 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN 430
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G E A +F M AS P EIT + VL A G V
Sbjct: 431 GHGEKALDMFSNML---------------------KASILPDEITYIGVLSACTHTGLVD 469
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + + G +I CL+D A+ G + A ++ E++ + + N + W +++
Sbjct: 470 KGRKYFLRMTSQHGIEP-NIAHYGCLVDLLARAGRLKEAYEVIENMPI-KANSIVWGALL 527
Query: 267 SG 268
+G
Sbjct: 528 AG 529
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 35/247 (14%)
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS--LGF 118
P PL L+ TC ++ Q+H K G ++ + ++ + G
Sbjct: 17 PTHPLIS------LLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 67
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ + +LFDE+PE NL WN MI G + + SL+ EM R V
Sbjct: 68 FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV------------- 114
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
+P T + ++ A+ + +HG+ K G +++ V L+ Y
Sbjct: 115 --------KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ-YNVFVHTALVQMYLL 165
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
CG + +A +F+ + ++++W IIS + G + + F M+ + P VT +
Sbjct: 166 CGQLDTARGVFD--VCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLV 223
Query: 299 SVLNACS 305
VL+ACS
Sbjct: 224 LVLSACS 230
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 222/448 (49%), Gaps = 107/448 (23%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT------------------- 107
+ FT+ +I++C L G ++H +K GF+S+ +V T
Sbjct: 109 NCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVF 168
Query: 108 ------------ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK--------- 146
A++N Y+ G + +LFD PER++V W+V+I+G ++
Sbjct: 169 GEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARE 228
Query: 147 ------------W----------GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
W GE+E +F+EMP RNV SW G++ GY + NG
Sbjct: 229 LFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVK----NGL 284
Query: 185 STE---------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
+E P++ T++AVL A + GA+ + +H Y E G+ ++ V
Sbjct: 285 FSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKG-NLFVG 343
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LID YAKCG I +A+ +F ++RK+++SW +II+G A+HG A+ F+RM+ G
Sbjct: 344 NVLIDMYAKCGVIENAVVVFN--CLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEG 401
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
+P+ VTF+ +L+AC+H GL HYGC+VD+LGRAG L+QA
Sbjct: 402 EEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQA 461
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+P E D V+ LLGAC + NVE+ E ++++E+E N ++V++ NI
Sbjct: 462 LNFIRKMPIE-PDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKD 520
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
+GR D RL+ M + K PG S++
Sbjct: 521 LGRSEDVARLKIAMRDTGFRKLPGCSVI 548
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 127/298 (42%), Gaps = 51/298 (17%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L+R+C +Y L Q+ A I G + + +V + + + KLFD++P+ N
Sbjct: 18 LLRSCK--NYERL-HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPN 74
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
TWN M G ++ G LF E +NR G P+ T
Sbjct: 75 TATWNAMFRGYLQNGHHRDTVVLFGE------------------LNRIAGM---PNCFTF 113
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
++ + + VR + +H K GF N+F V+ LID Y+K GC+ A K+F +
Sbjct: 114 PMIIKSCGKLEGVREGEEVHCCATKHGFKSNSF---VATSLIDMYSKKGCVEDAYKVFGE 170
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311
+ +N+V WT+II+G+ + G + F+ L P R + +
Sbjct: 171 M--HERNVVVWTAIINGYILCGDVVSGRRLFD------LAPERDVVM------------W 210
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
L+ + + A ++ +P+ D + +L + +G VEM E+V ++ E
Sbjct: 211 SVLISGYIESKNMAAARELFDKMPNR--DTMSWNAMLNGYAVNGEVEMFEKVFDEMPE 266
>gi|449448675|ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Cucumis sativus]
Length = 516
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 211/392 (53%), Gaps = 49/392 (12%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
LRP + FT+ +I++ L ++G QLH K G S+V+V +AL+++YV +G +++
Sbjct: 91 LRP--NEFTFGTVIQSPKALGDIHIGKQLHVCAIKTGLHSNVFVGSALLDLYVKVGVIEE 148
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ + F+++ N+V++ +I+G +K + A +F+EMP RNVVSW ++ G+++ +
Sbjct: 149 AQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHN 208
Query: 182 NGA----------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
A ST P I A + +I + C + + F D
Sbjct: 209 EDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHACAV-------KFFGKLD 261
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ VSN LI YAKCG + +L +F + ER N+VSW +++SGFA +G GK A++ ++RM
Sbjct: 262 VFVSNSLISFYAKCGSMEDSLLVFNKLLDER-NVVSWNAVLSGFAQNGRGKEAIDFYQRM 320
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGR 323
G KPN VTFLS+L AC+H GL HY C+VD+L R+G+
Sbjct: 321 ILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQARLDNPNLLKAEHYACMVDLLSRSGQ 380
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
++AE+ +P + + + LLG C H NVE+GE +++L ++ G+ YV+M N
Sbjct: 381 FKRAEEFIHDLPFD-PGIGFWKALLGGCQIHSNVELGELAAQRILALDPGDVSSYVMMSN 439
Query: 384 ILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ G++ LRR M E+ + PG S +
Sbjct: 440 AHSAAGKWHSVSILRREMKEKGLKRIPGCSWI 471
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 51/206 (24%)
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+ +L+D++P N+V+ I + + E A SLF M N+
Sbjct: 47 DARQLYDKMPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNL--------------- 91
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P+E T V+ + G + + +H K G ++ ++ V + L+D Y K G
Sbjct: 92 ------RPNEFTFGTVIQSPKALGDIHIGKQLHVCAIKTGLHS-NVFVGSALLDLYVKVG 144
Query: 241 CIFSALKLFEDI----------------SVER-------------KNLVSWTSIISGFAM 271
I A + FEDI +ER +N+VSW S+I GF+
Sbjct: 145 VIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQ 204
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTF 297
G + AV F M + G+ P + TF
Sbjct: 205 KGHNEDAVHLFIDMLREGILPTQSTF 230
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 217/409 (53%), Gaps = 51/409 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ +L+ P A Y+ + S+ R D+ T SF ++ C +
Sbjct: 69 WNAVIRGTALSSDPANAVFWYRAM----AASNGLHR--IDALTCSFALKACARALARSEA 122
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLH+ + + GF + V + T L++ Y +G L + KLFDE+P+ ++ +WN +I G +
Sbjct: 123 IQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQG 182
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
A F+ M +DG R P+ +T+ L A Q GA++
Sbjct: 183 SRPADAIMTFKRMK----------VDGNLR----------PNAVTVQGALLACSQLGALK 222
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H Y + N+ +++V N +ID YAKCG + A +FE++ + K+L++W ++I
Sbjct: 223 EGESVHKYIVEEKLNS-NVQVCNVVIDMYAKCGSMDKAYWVFENMRCD-KSLITWNTMIM 280
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
FAMHG G A++ FE++ + G+ P+ V++L+VL AC+H GL
Sbjct: 281 AFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEP 340
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYG +VD+LGRAGRL++A I +P ++V+ + LLGAC +G+VEM E +RK
Sbjct: 341 NIKHYGSMVDLLGRAGRLKEAYDIVSSLP--FPNMVLWQTLLGACRTYGDVEMAELASRK 398
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++EM + GD+VL+ N+ A R+ D R+R M R+ K PG S +
Sbjct: 399 LVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYI 447
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG-------------YTRMNRSNGASTE 187
+ + +G+L YA +F +P + W ++ G Y M SNG
Sbjct: 42 LCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLH-R 100
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
+T L A + A +H + GFNA D+ + L+D YAK G + A K
Sbjct: 101 IDALTCSFALKACARALARSEAIQLHSQLLRFGFNA-DVLLQTTLLDAYAKIGDLDLAQK 159
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH 306
LF+++ + ++ SW ++I+GFA A+ F+RM+ G L+PN VT L ACS
Sbjct: 160 LFDEMP--QPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQ 217
Query: 307 GG 308
G
Sbjct: 218 LG 219
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 195/359 (54%), Gaps = 34/359 (9%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G QL + + K+GF + ++ + ++++Y + G + ++ F + N+ +WN +I G V+
Sbjct: 349 GQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVR 408
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAV 196
++ A LF EMP R+V SW+ ++ GYT+ + N + +P+E+T+++V
Sbjct: 409 NRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSV 468
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L AI +G ++ + H Y D +S +ID YAKCG I +AL++F +I +
Sbjct: 469 LSAIATSGTLKEGRWAHEYVHNNSITVSD-NLSAAIIDMYAKCGSINNALEVFYEIREKA 527
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+ W +II G A+HG +++ F +++ +K N +TF+ VL AC H GL
Sbjct: 528 STVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRH 587
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC+VD+LGRAGRLE+AE++ +P + DVV+ LL AC H
Sbjct: 588 FMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMK-ADVVIWGTLLAACRTH 646
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
GNV++GER + +E +G VL+ N+ A G++ DA +RR M + PG S
Sbjct: 647 GNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRLPGYS 705
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 185/399 (46%), Gaps = 75/399 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQI-YTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+ T++ +S + +A L+KQ++ + + + L ++++ I C
Sbjct: 166 YTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWAC-------- 217
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
LH ++ K+ F+ V V+T L+ MY L ++ LFDE+PE+N+V+WNVM+ G K
Sbjct: 218 -RMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSK 276
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAV 196
G ++ AR +FE +P +++V+W I+DGY R+ R N A EP+++ ++ +
Sbjct: 277 AGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDL 336
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG-----C---------- 241
+ + A+ Q + K GF+ +D + + +I YA CG C
Sbjct: 337 ISGCGRTMAMTEGQQLLSAVVKMGFDCYDF-IQSTIIHLYAACGRINEACLQFRIGSKEN 395
Query: 242 ----------------IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
I A++LF ++ +++ SW+++ISG+ + A+E F +M
Sbjct: 396 VASWNALIAGYVRNRMIDRAMELFNEMP--ERDVFSWSTMISGYTQNEQPNLALELFHKM 453
Query: 286 QKVGLKPNRVTFLSVLNA-CSHGGLHYG--------------------CLVDMLGRAGRL 324
G+KPN VT +SVL+A + G L G ++DM + G +
Sbjct: 454 VASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSI 513
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
A ++ I + + V ++ + HG+ + ++
Sbjct: 514 NNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKI 552
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 171/343 (49%), Gaps = 41/343 (11%)
Query: 47 LYKQLQQIYTHSHSPLRPLFDS--FTYSFLIRTCVTLSYPNL----GTQLHAVISKVGFQ 100
+++Q + + H +S L P F Y ++ + + +L G Q+H ++SK G
Sbjct: 39 IFQQQENPFLHLNSLLNPKTGQRHFNYELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLG 98
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
S+ ++ +L+NMY G L D+ +FD P + V++NVMI+G VK G+L+YA LF+EM
Sbjct: 99 SNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEM 158
Query: 161 PCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQ 210
P + VS+T ++ G+++ N A P+E+TI ++ A G + C+
Sbjct: 159 PVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACR 218
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
++HG K F F + VS L+ Y C + A LF+++ KN+VSW +++G++
Sbjct: 219 MLHGLVIKMLFEEF-VLVSTNLLRMYCVCSSLVEARALFDEMP--EKNIVSWNVMLNGYS 275
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
G +A FER+ PN+ + +G ++D R R+ +A +
Sbjct: 276 KAGFVDSARVVFERI------PNKDL------------VTWGTIIDGYVRVERINEALMM 317
Query: 331 ALGIPS---EITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
+ S E DV++ ++ G C + G+++ V++M
Sbjct: 318 YRSMISAGWEPNDVMMVDLISG-CGRTMAMTEGQQLLSAVVKM 359
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 108/271 (39%), Gaps = 78/271 (28%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQL-HAVIS-----------------------KVGF 99
P D F++S +I PNL +L H +++ K G
Sbjct: 423 PERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGR 482
Query: 100 QSHVYV-----------NTALVNMYVSLGFLKDSSKLFDELPER--NLVTWNVMITGLVK 146
+H YV + A+++MY G + ++ ++F E+ E+ + WN +I GL
Sbjct: 483 WAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAV 542
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G + +F ++ R++ ++N IT + VL A G V
Sbjct: 543 HGHANLSLKIFSDLERRHI-----------KLN----------AITFIGVLTACCHVGLV 581
Query: 207 RNCQLIHGYGEKRGFNAF--------DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
+ KR F + DI+ C++D + G + A ++ + + + +
Sbjct: 582 ES--------GKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPM-KAD 632
Query: 259 LVSWTSIISGFAMHG---MGKAAVENFERMQ 286
+V W ++++ HG +G+ A EN R++
Sbjct: 633 VVIWGTLLAACRTHGNVDVGERAAENLARLE 663
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 217/451 (48%), Gaps = 74/451 (16%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQLQQIYTHSH 59
+H+H+L + H ++ NTLL+ Y+ S P++ F+ + L Y+
Sbjct: 82 VHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHD 140
Query: 60 SPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
P L + FT S +I+ G QLH K GF S+V+V +
Sbjct: 141 RPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGS 200
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
AL+++Y G + D+ +FD L RN V+WN +I G + E A LF+ M
Sbjct: 201 ALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM------- 253
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN--AFD 225
+ DG+ PS + ++ A G + + +H Y K G AF
Sbjct: 254 ---LRDGF-----------RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF- 298
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
N L+D YAK G I A K+F+ ++ ++++VSW S+++ +A HG GK AV FE M
Sbjct: 299 --AGNTLLDMYAKSGSIHDARKIFDRLA--KRDVVSWNSLLTAYAQHGFGKEAVWWFEEM 354
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRL 324
++VG++PN ++FLSVL ACSH GL HY +VD+LGRAG L
Sbjct: 355 RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDL 414
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+A + +P E T + + LL AC H N E+G V E++ + G +V++YNI
Sbjct: 415 NRALRFIEEMPIEPT-AAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A GR+ DA R+R+ M E K P S V
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWV 504
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 56/330 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D Y+ L++ C G +HA I + F+ + + L+NMY G L+++ K+F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD-GYTRMNRSNGAS 185
+++P+R+ VTW +I+G + + PC ++ + +L GY+
Sbjct: 119 EKMPQRDFVTWTTLISGYSQ-----------HDRPCDALLFFNQMLRFGYS--------- 158
Query: 186 TEPSEITILAVLPAIWQNGAVRNC--QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P+E T+ +V+ A R C +HG+ K GF++ ++ V + L+D Y + G +
Sbjct: 159 --PNEFTLSSVIKA--AAAERRGCCGHQLHGFCVKCGFDS-NVHVGSALLDLYTRYGLMD 213
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A +F+ ++E +N VSW ++I+G A + A+E F+ M + G +P+ ++ S+ A
Sbjct: 214 DAQLVFD--ALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGA 271
Query: 304 CSHGG-LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
CS G L G L+DM ++G + A KI + DVV
Sbjct: 272 CSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR--DVV 329
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMER 372
LL A + HG G+ EM R
Sbjct: 330 SWNSLLTAYAQHG---FGKEAVWWFEEMRR 356
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 219/420 (52%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
F +L+ + D+ ++A L+ + + H P D F + +G
Sbjct: 81 FTSLMSLHLQLDNQREAISLFAR---VVAAGHRP-----DGFAVVGALSASSGAGDQVVG 132
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H +I ++G V V AL++MY G + + K+FD + ++ VTW M+ G +K
Sbjct: 133 RAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKC 192
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
++ A S F+++P R+VV+WT ++ G+ + + A P+ +TI+ VL
Sbjct: 193 AGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVL 252
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA+ ++IHGYG K + +I VSN L+D YAK G I A +F++ V+ K
Sbjct: 253 SACADIGALDLGRVIHGYGSKCN-ASLNIIVSNALMDMYAKSGHIEMAFSVFQE--VQSK 309
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ +WT++IS + G GK A+E F+ M + G+ PN VTF+SVL+ACSH GL
Sbjct: 310 DSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELF 369
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC++D+LGR G LE+AE + + E D+V+ R LL AC G
Sbjct: 370 DRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVE-PDIVIWRSLLSACLVRG 428
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N + E +++++ E G+ G YVL++N+ A ++ +A +R+ M K PG S +
Sbjct: 429 NNRLAEIAGKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWI 488
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 128/319 (40%), Gaps = 75/319 (23%)
Query: 89 QLHAVISKVGFQSHVY-VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++HA+ G H V+ + Y G + D+ KLFDE+P +L+++ +++ ++
Sbjct: 32 RIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLISFTSLMSLHLQL 91
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
A SLF R A P ++ L A G
Sbjct: 92 DNQREAISLFA---------------------RVVAAGHRPDGFAVVGALSASSGAGDQV 130
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER----------- 256
+ +HG + G + ++ V N LID Y++CG SA+K+F+ +S++
Sbjct: 131 VGRAVHGLIFRLGLDG-EVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGY 189
Query: 257 ------------------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
+++V+WT++I+G A+E F RM G +P VT +
Sbjct: 190 IKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIV 249
Query: 299 SVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSE 337
VL+AC+ G L G L+DM ++G +E A + + S+
Sbjct: 250 GVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSK 309
Query: 338 ITDVVVRRILLGACSFHGN 356
D ++ C+ G+
Sbjct: 310 --DSFTWTTMISCCTVQGD 326
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 25/161 (15%)
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
Q +R Q IH G + VS + YA G + A KLF++I +L+S
Sbjct: 23 QCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIP--NPDLIS 80
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY---------- 311
+TS++S + A+ F R+ G +P+ + L+A S G
Sbjct: 81 FTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIF 140
Query: 312 -----------GCLVDMLGRAGRLEQAEKI--ALGIPSEIT 339
L+DM + G+ E A K+ + + E+T
Sbjct: 141 RLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVT 181
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 232/445 (52%), Gaps = 48/445 (10%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ--QIYTHSHSPLRPL-F 66
++H+ + + L +H L LL Y AF +++++ ++ ++ + +R L
Sbjct: 31 QLHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSPDVFVYN-TMIRGLTM 89
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+FTY+F+++ C L P G Q+H I K G +++++L++MY + G + D+ ++
Sbjct: 90 DNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVL 149
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
E E N + N MI+G + G ++ AR +F++M ++ SW+ ++ GYT+ NG T
Sbjct: 150 GEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTK----NGMHT 205
Query: 187 E--------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
E P+E ++++L A Q G + + IH Y +K +++ L
Sbjct: 206 EALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRV-LMSTKLTTAL 264
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID YAK G I LF+ ++ R+++V+W +IS FA+HG + F+ M G++P
Sbjct: 265 IDMYAKSGSIECGYGLFQKMA--RRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRP 322
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
N+V F+++L+ACSH G HYGC+VD+LGRAG L AE++
Sbjct: 323 NKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADAEQL 382
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
L +P + + ++ LLGAC H +++ G ++E+E +G + L + A G
Sbjct: 383 ILSMPKQ-PNSIIWGSLLGACRTHNDLKRGTWAFENLMELEPTSGDRHKLAGLMFANAGE 441
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+A ++R+++ E+ + G S +
Sbjct: 442 KEEAAKIRKMIHEKEMVTTCGSSFI 466
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 227/460 (49%), Gaps = 64/460 (13%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYS-----------LADSPKKAFLLYKQLQQIYTHS- 58
+H HL+ T +L L N L+ YS D P K + L Y+ +
Sbjct: 32 VHGHLIKT-ALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTG 90
Query: 59 -HSPLRPLFDSFTYSFLIRTCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVS 115
LFD ++ + +L NL Q+H V VG + +V +N AL++ Y
Sbjct: 91 FFDEAHNLFDKMPQRNVV-SYNSLISGNLQWLRQVHGVAVIVGMEWNVILNNALIDAYGK 149
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
G S +F +PERN+V+W M+ + L+ A +F++MP +N VSWT +L G+
Sbjct: 150 CGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGF 209
Query: 176 TRMNRSNGASTE--------------PSEITILAVLPAIWQNGAVRNCQLIHGY---GEK 218
R NG E PS T ++V+ A Q + + +HG G+K
Sbjct: 210 VR----NGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDK 265
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
G N F++ V N LID YAKCG + SA LFE + +++V+W ++I+GFA +G G+ +
Sbjct: 266 SG-NLFNVYVCNALIDMYAKCGDMKSAENLFEMAPM--RDVVTWNTLITGFAQNGHGEES 322
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+ F RM + ++PN VTFL VL+ C+H GL HY L+D
Sbjct: 323 LAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLID 382
Query: 317 MLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
+LGR RL +A + +P I + + V +LGAC HGN+++ + K+ E+E N
Sbjct: 383 LLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPENT 442
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G YV++ NI A G++ A+R+R VM ER K P S +
Sbjct: 443 GRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRI 482
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 158/333 (47%), Gaps = 48/333 (14%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
YSFLI C+T L +H + K ++ L++ Y G + + K F +LP
Sbjct: 13 YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLP 72
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+ +WN +I+ K G + A +LF++MP RNVVS+ ++ G + R +
Sbjct: 73 NKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLR---------Q 123
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGE----KRGFNAF------DIRVSNCLIDTYAKCG 240
+ +AV+ + N + N LI YG+ F+ F ++ ++ Y +
Sbjct: 124 VHGVAVIVGMEWN-VILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRAC 182
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ A ++F+D+ V KN VSWT++++GF +G A + F++M + G++P+ TF+SV
Sbjct: 183 RLDEACRVFKDMPV--KNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSV 240
Query: 301 LNACS-----------HGGLHYG-------------CLVDMLGRAGRLEQAEKIALGIPS 336
++AC+ HG + G L+DM + G ++ AE + P
Sbjct: 241 IDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAP- 299
Query: 337 EITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+ DVV L+ + +G+ E V R+++E
Sbjct: 300 -MRDVVTWNTLITGFAQNGHGEESLAVFRRMIE 331
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 203/360 (56%), Gaps = 38/360 (10%)
Query: 91 HAVISKVGF--QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
H+++ K+G S ++++ALV+ Y L ++ K+FDEL R+ +N +++ K G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-----------ASTEPSEITILAVL 197
++ A LFEEMP RNVVSWT ++ GY + R A +P+E+T+ +VL
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
PA GA+ + + Y +G ++ V+N L++ Y+KCG I A ++F+ I ++
Sbjct: 228 PACAAVGAMELGRKVEEYARGKGL-LRNVYVANALLEMYSKCGSIRQAWQVFQGIG-RQQ 285
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+L SW S+I FA+HG+ + A+ F +++ G+KP+ +TF+ V+ AC+HGGL
Sbjct: 286 DLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFF 345
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRAG L ++ + +P E D V+ LLGACSFHG
Sbjct: 346 DSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVE-PDAVIWGALLGACSFHG 404
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NVE+ E K++ +E N + V++ NI A G++ ++ +++ E++ K G S +
Sbjct: 405 NVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 464
>gi|449523361|ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Cucumis sativus]
Length = 516
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 211/392 (53%), Gaps = 49/392 (12%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
LRP + FT+ +I++ L ++G QLH K G S+++V +AL+++YV +G +++
Sbjct: 91 LRP--NEFTFGTVIQSAKALGDIHIGKQLHVCAIKTGLHSNLFVGSALLDLYVKVGVIEE 148
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ + F+++ N+V++ +I+G +K + A +F+EMP RNVVSW ++ G+++ +
Sbjct: 149 AQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHN 208
Query: 182 NGA----------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
A ST P I A + +I + C + + F D
Sbjct: 209 EDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHACAV-------KFFGKLD 261
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ VSN LI YAKCG + +L +F + ER N+VSW +++SGFA +G GK A++ ++RM
Sbjct: 262 VFVSNSLISFYAKCGSMEDSLLVFNKLLDER-NVVSWNAVLSGFAQNGRGKEAIDFYQRM 320
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGR 323
G KPN VTFLS+L AC+H GL HY C+VD+L R+G+
Sbjct: 321 ILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQARLDNPNLLKAEHYACMVDLLSRSGQ 380
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
++AE+ +P + + + LLG C H NVE+GE +++L ++ G+ YV+M N
Sbjct: 381 FKRAEEFIHDLPFD-PGIGFWKALLGGCQIHSNVELGELAAQRILALDPGDVSSYVMMSN 439
Query: 384 ILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ G++ LRR M E+ + PG S +
Sbjct: 440 AHSAAGKWHSVSILRREMKEKGLKRIPGCSWI 471
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 51/206 (24%)
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+ +L+D+LP N+V+ I + + E A SLF M N+
Sbjct: 47 DARQLYDKLPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNL--------------- 91
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P+E T V+ + G + + +H K G ++ ++ V + L+D Y K G
Sbjct: 92 ------RPNEFTFGTVIQSAKALGDIHIGKQLHVCAIKTGLHS-NLFVGSALLDLYVKVG 144
Query: 241 CIFSALKLFEDI----------------SVER-------------KNLVSWTSIISGFAM 271
I A + FEDI +ER +N+VSW S+I GF+
Sbjct: 145 VIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQ 204
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTF 297
G + AV F M + G+ P + TF
Sbjct: 205 KGHNEDAVHLFIDMLREGILPTQSTF 230
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 241/478 (50%), Gaps = 75/478 (15%)
Query: 3 SSNNVTTRIHSHLLTTN-SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
SS ++ R+H+ ++TT + T L N LL FY+ +A ++ ++ HSH
Sbjct: 27 SSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEI----PHSHKD 82
Query: 62 -------------------------------LRPLFDSFTYSFLIRTCVTLSYPNLGTQL 90
++P D T L C L +G Q
Sbjct: 83 TVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKP--DEVTLVCLFGGCARLGDVVVGAQG 140
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
H + K+G A+++MY G + ++ ++F E+ +++V+W V++ G+++ +
Sbjct: 141 HGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGV 200
Query: 151 EYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLPA 199
R +F+EMP RN V+WT ++ GY + + E + +T+ ++L A
Sbjct: 201 RNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTA 260
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
Q+G + + +H Y K +I V ++D YAKCG I A K F+ + ++N+
Sbjct: 261 CSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP--QRNV 318
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
VSW +++SG AMHG+G+AA++ F +M K KP+ VTF SVL+ACSH GL
Sbjct: 319 VSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGN 377
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HY C+VD+LGRAGRLE+AE + +P +VV+ LLG+CS HG +
Sbjct: 378 LESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGS-LLGSCSIHGKL 436
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++GE + +++++++ N ++L+ N+ A G+ A LR+V+ +R K PG S +
Sbjct: 437 QLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSI 494
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 137/344 (39%), Gaps = 86/344 (25%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQS--HVYVNTALVNMYVSLGFLKDSSKLFDE 128
Y FL+R+C S ++G +LHA I G +++ AL+ Y S G + K+FDE
Sbjct: 16 YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75
Query: 129 LP--ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+P ++ V W ++ V+ + A +F EM R G
Sbjct: 76 IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEM-------------------RRCG--V 114
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P E+T++ + + G V HG K G + + N ++D YAK G + A
Sbjct: 115 KPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVE-KACNAVMDMYAKSGLMGEAR 173
Query: 247 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKA 277
++F ++ + +N V+WT +I+G+ G+ +
Sbjct: 174 RVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQ- 232
Query: 278 AVENF----ERMQKVGLKPNRVTFLSVLNACSHGG-LHYG-------------------- 312
E+F E + + ++ N VT S+L ACS G L G
Sbjct: 233 --ESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVG 290
Query: 313 -CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
+VDM + GR+ A K +P +VV +L + HG
Sbjct: 291 TAMVDMYAKCGRIHIAFKFFKKMPQR--NVVSWNAMLSGLAMHG 332
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 221/421 (52%), Gaps = 45/421 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ +L++ Y P KAF ++ +L + LRP DS + + C G
Sbjct: 70 YTSLINLYLSTQLPIKAFSVFSKL------VNEGLRP--DSHSVVGALSACGKKQDLLNG 121
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H +I + ++ V AL++MY G +K + +F ++ +++ +W ++ G V
Sbjct: 122 KLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMC 181
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR---------MNRSNGASTE--PSEITILAV 196
LE AR +F+EMP RN V+WT ++ GY R M R A E P+ IT +AV
Sbjct: 182 NGLESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAV 241
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L GA + Q +HGY K + + VSN L+D Y+K GC+ SA+K+F+ + +
Sbjct: 242 LSGCADLGAHDHGQAVHGYISKVNLDK-GVTVSNALMDMYSKGGCVESAMKIFDRLV--K 298
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K++ SWT++IS + HG G A+E F M + G+ PN VTFL VL+ CSH GL
Sbjct: 299 KDVFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPNDVTFLLVLSGCSHSGLLVEANKL 358
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC+VD+L RAG LE+A+++ +P + D V+ R LL AC
Sbjct: 359 FNGMIQCYGFEPKIEHYGCMVDLLCRAGLLEEAKELIDNMPMD-PDAVIWRSLLSACMNQ 417
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
N+ + E +K++E+E + G YVL+ NI R DA ++R++M ++ +K P S
Sbjct: 418 RNLGLAEIAGKKIIELEPHDDGVYVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPACSY 477
Query: 415 V 415
+
Sbjct: 478 I 478
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 75/312 (24%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
LVN Y LG +D+ K+F + + + VT+ +I L ++P + +
Sbjct: 42 LVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLIN-----------LYLSTQLPIKAFSVF 90
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+ +++ R P +++ L A + + N +L+HG + A I V
Sbjct: 91 SKLVNEGLR----------PDSHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGANSI-V 139
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVER-----------------------------KNL 259
N LID Y + G I A +F+ + ++ +N
Sbjct: 140 GNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMPWRND 199
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGLH-------- 310
V+WT++I+G+ GM +E F +M+ G +P +T ++VL+ C+ G H
Sbjct: 200 VAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVHG 259
Query: 311 -------------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
L+DM + G +E A KI + + DV ++ A S HG
Sbjct: 260 YISKVNLDKGVTVSNALMDMYSKGGCVESAMKIFDRLVKK--DVFSWTTMISAHSSHGKG 317
Query: 358 EMGERVTRKVLE 369
V +LE
Sbjct: 318 NHALEVFYDMLE 329
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 203/360 (56%), Gaps = 38/360 (10%)
Query: 91 HAVISKVGF--QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
H+++ K+G S ++++ALV+ Y L ++ K+FDEL R+ +N +++ K G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-----------ASTEPSEITILAVL 197
++ A LFEEMP RNVVSWT ++ GY + R A +P+E+T+ +VL
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
PA GA+ + + Y +G ++ V+N L++ Y+KCG I A ++F+ I ++
Sbjct: 228 PACAAVGAMELGRKVEEYARGKGL-LRNVYVANALLEMYSKCGSIRQAWQVFQGIG-RQQ 285
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+L SW S+I FA+HG+ + A+ F +++ G+KP+ +TF+ V+ AC+HGGL
Sbjct: 286 DLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFF 345
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRAG L ++ + +P E D V+ LLGACSFHG
Sbjct: 346 DSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVE-PDAVIWGALLGACSFHG 404
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NVE+ E K++ +E N + V++ NI A G++ ++ +++ E++ K G S +
Sbjct: 405 NVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 464
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 217/451 (48%), Gaps = 74/451 (16%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQLQQIYTHSH 59
+H+H+L + H ++ NTLL+ Y+ S P++ F+ + L Y+
Sbjct: 82 VHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHD 140
Query: 60 SPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
P L + FT S +I+ G QLH K GF S+V+V +
Sbjct: 141 RPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGS 200
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
AL+++Y G + D+ +FD L RN V+WN +I G + E A LF+ M
Sbjct: 201 ALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM------- 253
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN--AFD 225
+ DG+ PS + ++ A G + + +H Y K G AF
Sbjct: 254 ---LRDGF-----------RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF- 298
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
N L+D YAK G I A K+F+ ++ ++++VSW S+++ +A HG GK AV FE M
Sbjct: 299 --AGNTLLDMYAKSGSIHDARKIFDRLA--KRDVVSWNSLLTAYAQHGFGKEAVWWFEEM 354
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRL 324
++VG++PN ++FLSVL ACSH GL HY +VD+LGRAG L
Sbjct: 355 RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDL 414
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+A + +P E T + + LL AC H N E+G V E++ + G +V++YNI
Sbjct: 415 NRALRFIEEMPIEPT-AAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A GR+ DA R+R+ M E K P S V
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWV 504
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 148/313 (47%), Gaps = 53/313 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D Y+ L++ C G +HA I + F+ + + L+NMY G L+++ K+F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD-GYTRMNRSNGAS 185
+++P+R+ VTW +I+G + + PC ++ + +L GY+
Sbjct: 119 EKMPQRDFVTWTTLISGYSQ-----------HDRPCDALLFFNQMLRFGYS--------- 158
Query: 186 TEPSEITILAVLPAIWQNGAVRNC--QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P+E T+ +V+ A R C +HG+ K GF++ ++ V + L+D Y + G +
Sbjct: 159 --PNEFTLSSVIKA--AAAERRGCCGHQLHGFCVKCGFDS-NVHVGSALLDLYTRYGLMD 213
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A +F+ ++E +N VSW ++I+G A + A+E F+ M + G +P+ ++ S+ A
Sbjct: 214 DAQLVFD--ALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGA 271
Query: 304 CSHGG-LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
CS G L G L+DM ++G + A KI + DVV
Sbjct: 272 CSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR--DVV 329
Query: 343 VRRILLGACSFHG 355
LL A + HG
Sbjct: 330 SWNSLLTAYAQHG 342
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 37/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT L+ C L LG +HA I K S++ + AL++MYV LK + K+F
Sbjct: 163 DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVF 222
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
D E++ V+WN +I G K GELE A LF ++P R++VSW ++ GY +
Sbjct: 223 DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKC 282
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
R + +P ++TI+ ++ A+ + GA+ + IHG K + + LID Y
Sbjct: 283 LFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM-LTKIEAFSGSALIDMY 341
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCG I A +F I K++ +WT++I+GFA HG G A+E F MQ KPN VT
Sbjct: 342 CKCGSIERAFVIFNQIP--EKDVTTWTTMITGFAFHGFGNKALELFSVMQ-AETKPNDVT 398
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+SVL ACSH GL HYGCLVD+L R+GRL A + +
Sbjct: 399 FVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKM 458
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E + + + L AC H N+E+ ER ++L++E G Y+L+ N+ A GR+ +
Sbjct: 459 PMEPSRSIWGAV-LSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYS 517
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+ +R VM+ R K G S V
Sbjct: 518 DSIREVMNSRGVKKIAGCSSV 538
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 166/380 (43%), Gaps = 88/380 (23%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+FNT++ + ++ +KAF +Y+ + Q T+ D T+ +L++T ++
Sbjct: 34 IFNTMILGFPFSN--EKAFTIYRSMLQNGTYP--------DRQTFLYLLQTTKFVAEVK- 82
Query: 87 GTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+H G S Y+ +L+ YV G + + +LFDE+ +RN+V++N MI G
Sbjct: 83 --QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFA 140
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K G + LF +M RS+G EP + T+L +L Q G
Sbjct: 141 KVGNILGILELFHDM-------------------RSHG--LEPDDFTMLGLLLLCGQLGE 179
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE--------------- 250
+ + +H EK + ++ + N L+D Y KC + A K+F+
Sbjct: 180 TKLGKSVHAQIEK-SIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIA 238
Query: 251 ------------DI--SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
D+ + +++VSW S+ISG+A +G F RM +KP++VT
Sbjct: 239 GYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVT 298
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+++++A + G L G L+DM + G +E+A I IP
Sbjct: 299 IVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP 358
Query: 336 SEITDVVVRRILLGACSFHG 355
+ DV ++ +FHG
Sbjct: 359 EK--DVTTWTTMITGFAFHG 376
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 36/224 (16%)
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T P T L +L V + IH + G + + + N LI Y GC A
Sbjct: 61 TYPDRQTFLYLLQT---TKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECA 117
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL------- 298
+LF+++S +N+VS+ ++I GFA G +E F M+ GL+P+ T L
Sbjct: 118 RQLFDEMS--DRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCG 175
Query: 299 ----SVLNACSHGGLH----------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
+ L H + Y L+DM + L+ A K+ G P E V
Sbjct: 176 QLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDG-PMEKDTVSWN 234
Query: 345 RILLG---------ACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
I+ G AC + + V+ L GDYV
Sbjct: 235 TIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYV 278
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/426 (31%), Positives = 219/426 (51%), Gaps = 57/426 (13%)
Query: 25 TLLFNTLLHFYSLAD----SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80
T FNT++ +L + S K+ F+ ++ S P D T+ F+ + C
Sbjct: 79 TFCFNTIIRICTLHEPSSLSSKRFFV------EMRRRSVPP-----DFHTFPFVFKACAA 127
Query: 81 LSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
+L LH + G S ++ L+ +Y + + + +LFDE P+R++VT+N
Sbjct: 128 KKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYN 187
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
V+I GLVK E+ AR LF+ MP R++VSW ++ GY +MN A +P
Sbjct: 188 VLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKP 247
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGE-KRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
+ I++ L A Q+G + + IH Y + KR F D ++ L+D YAKCG I +A++
Sbjct: 248 DNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLF--IDSFLATGLVDFYAKCGFIDTAME 305
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+FE S K L +W ++I+G AMHG G+ V+ F +M G+KP+ VTF+SVL CSH
Sbjct: 306 IFELCS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHS 363
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVV 342
GL HYGC+ D+LGRAG +E+A ++ +P + ++
Sbjct: 364 GLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLL 423
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
LLG C HGN+E+ E+ +V + +GG Y +M + A R+ + ++R ++D
Sbjct: 424 AWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIID 483
Query: 403 ERNALK 408
+K
Sbjct: 484 RDKKVK 489
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 141/465 (30%), Positives = 234/465 (50%), Gaps = 67/465 (14%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ---------QIYTHSHS 60
+IH H + T S ++ L NTL+ Y + A+ +++Q+ I+ ++
Sbjct: 148 QIHCHAIITGSF-YYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKK 206
Query: 61 P----------------LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF--QSH 102
L+P D FT L+ C L LG +HA I + G S+
Sbjct: 207 GHNIEALKFLHEMVGLGLKP--DEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSN 264
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+ +N AL++MYV L+ + +F+ + ++ ++WN MI G K G LE A + FE+MPC
Sbjct: 265 LILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPC 324
Query: 163 RNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212
R++VSW I+ GY + + P +TI+ ++ A + GA+ + + I
Sbjct: 325 RDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWI 384
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
HG+ + D + + ID Y KCG I A +F +++ K++ WT++I+GFA H
Sbjct: 385 HGWVVRMQMK-IDAFLGSAFIDMYWKCGSIKRACMVFREVT--EKDVTVWTTMITGFAFH 441
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G G A++ F MQ+ + PN+VTF++VL ACSH G H
Sbjct: 442 GYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEH 500
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
YGCLVD+LGR+GR + + + +P + + + + L AC +GN+E+ E +++L++
Sbjct: 501 YGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAV-LSACRAYGNIEIAEIAGKELLKL 559
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E G YVL+ NI A GR+ ++++R +M+ R K G S V
Sbjct: 560 EPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSV 604
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 99/447 (22%), Positives = 179/447 (40%), Gaps = 97/447 (21%)
Query: 23 HHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
HHT ++NT++ SL S ++F Y L S + P + T+ FL++
Sbjct: 90 HHTPHPNLYIYNTMISALSL--SLNQSFAFYNSLLS------SCIYP--NRSTFLFLLQA 139
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
LS + HA+I+ G + Y+ L+ +Y+ + + ++F ++ + V++
Sbjct: 140 SKFLS-QVMQIHCHAIIT--GSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSF 196
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
N+MI G K G A EM G +P E T+L +L
Sbjct: 197 NIMIFGYAKKGHNIEALKFLHEMV---------------------GLGLKPDEFTMLGLL 235
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGF-NAFDIRVSNCLIDTYAKC----------------- 239
+ G + + +H + E+RG + ++ ++N L+D Y KC
Sbjct: 236 ICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKD 295
Query: 240 --------------GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
G + A FED+ ++LVSW SII+G+A G FE M
Sbjct: 296 TISWNTMIAGYAKVGNLEIAHNFFEDMPC--RDLVSWNSIIAGYAQKGDCLMVQRLFENM 353
Query: 286 QKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRL 324
+ P+ VT +++++A + G LH+G +DM + G +
Sbjct: 354 VAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSI 413
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
++A + + + DV V ++ +FHG ++ ++ E N +V +
Sbjct: 414 KRACMVFREVTEK--DVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTA 471
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPG 411
+ G R+ M ER ++ PG
Sbjct: 472 CSHSGFVSQGLRIFNSMKERYGIE-PG 497
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 219/403 (54%), Gaps = 55/403 (13%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y+ +D K+A L+ +++Q + + P ++FT++ +++ C + +LG Q+H+ +
Sbjct: 313 YAQSDRSKEALDLFLRMRQ------TSVVP--NNFTFASVLQACASSVSLDLGKQIHSCV 364
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K G S+V+V+ A++++Y G +++S KLF+ELP+RN VTWN +I G V+ G+ E A
Sbjct: 365 LKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAM 424
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
+LF M ++ +P+E+T +VL A A+ IH
Sbjct: 425 NLFTHMLEHDM---------------------QPTEVTYSSVLRASASLAALEPGLQIHS 463
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
K +N D V+N LID YAKCG I A F+ ++ +++ VSW ++I G++MHGM
Sbjct: 464 LTIKTMYNK-DTVVANSLIDMYAKCGRINDARLTFDKMN--KRDEVSWNAMICGYSMHGM 520
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
A+ F+ MQ KPN++TF+ VL+ACS+ GL HY
Sbjct: 521 SMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYT 580
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+V +LGR GR ++A K+ +G + V+V R LLGAC H V++G + VLEME
Sbjct: 581 CMVWLLGRLGRFDEAMKL-IGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEP 639
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +VL+ N+ A GR+ + +R+ M ++ K PG S V
Sbjct: 640 HDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWV 682
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 139/282 (49%), Gaps = 45/282 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
++FT S +++C+ L N+G +H K + ++V AL+ +Y G + D+ +LF
Sbjct: 236 NNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLF 295
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+E+P+ +L+ W++MI YA+S + LD + RM ++ S
Sbjct: 296 EEMPKTDLIPWSLMIA--------RYAQSDRSKEA----------LDLFLRMRQT---SV 334
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+ T +VL A + ++ + IH K G N+ ++ VSN ++D YAKCG I +++
Sbjct: 335 VPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNS-NVFVSNAIMDVYAKCGEIENSM 393
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA-CS 305
KLFE++ +N V+W +II G+ G G+ A+ F M + ++P VT+ SVL A S
Sbjct: 394 KLFEELP--DRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASAS 451
Query: 306 HGGLHYG--------------------CLVDMLGRAGRLEQA 327
L G L+DM + GR+ A
Sbjct: 452 LAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDA 493
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 74/385 (19%)
Query: 11 IHSHLLTTNSLLHHTLLF--NTLLHFYSLADSPKKAFLLYKQLQQI-----------YTH 57
+H H+L + L LF N LL+FY ++S + A L+ ++ Q Y+
Sbjct: 57 LHCHILKRGTSLD---LFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113
Query: 58 SHSPLRPL------------FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
H + L + F ++ L++ V++ +L LHA + K+G + +V
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
TAL++ Y G + + +FD++ +++V+W M+ + E + LF +M
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR---- 229
Query: 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+ GY +P+ TI L + A + +HG K ++ D
Sbjct: 230 ------IMGY-----------KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYD-HD 271
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ V L++ YAK G I A +LFE++ + +L+ W+ +I+ +A K A++ F RM
Sbjct: 272 LFVGIALLELYAKSGEIIDAQRLFEEMP--KTDLIPWSLMIARYAQSDRSKEALDLFLRM 329
Query: 286 QKVGLKPNRVTFLSVLNACSH------GGLHYGC---------------LVDMLGRAGRL 324
++ + PN TF SVL AC+ G + C ++D+ + G +
Sbjct: 330 RQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEI 389
Query: 325 EQAEKIALGIPSEITDVVVRRILLG 349
E + K+ +P DV I++G
Sbjct: 390 ENSMKLFEELPDR-NDVTWNTIIVG 413
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 150/337 (44%), Gaps = 60/337 (17%)
Query: 39 DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV-TLSYPNLGTQLHAVISKV 97
DS K + LL+ Q + I+ H DS +Y+ +++ + + P G LH I K
Sbjct: 9 DSTKLSQLLH-QCRNIH---HQQCLSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKR 64
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE----LEYA 153
G ++ L+N YV L+D+SKLFDE+P+ N +++ + G + + L +
Sbjct: 65 GTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFI 124
Query: 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIH 213
+F+E N +T +L M+ LA L C +H
Sbjct: 125 LRIFKEGHEVNPFVFTTLLKLLVSMD--------------LAHL-----------CWTLH 159
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
K G +A D V LID Y+ G + A +F+DI K++VSWT +++ +A +
Sbjct: 160 ACVYKLGHHA-DAFVGTALIDAYSVRGNVDVARHVFDDICC--KDMVSWTGMVACYAENC 216
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNAC-----------SHGGLHYGC--------- 313
+ +++ F +M+ +G KPN T L +C HG GC
Sbjct: 217 FYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGI 276
Query: 314 -LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
L+++ ++G + A+++ +P TD++ +++
Sbjct: 277 ALLELYAKSGEIIDAQRLFEEMPK--TDLIPWSLMIA 311
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 37/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT L+ C L LG +HA I K S++ + AL++MYV LK + K+F
Sbjct: 228 DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVF 287
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
D E++ V+WN +I G K GELE A LF ++P R++VSW ++ GY +
Sbjct: 288 DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKC 347
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
R + +P ++TI+ ++ A+ + GA+ + IHG K + + LID Y
Sbjct: 348 LFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM-LTKIEAFSGSALIDMY 406
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCG I A +F I K++ +WT++I+GFA HG G A+E F MQ KPN VT
Sbjct: 407 CKCGSIERAFVIFNQIP--EKDVTTWTTMITGFAFHGFGNKALELFSVMQ-AETKPNDVT 463
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+SVL ACSH GL HYGCLVD+L R+GRL A + +
Sbjct: 464 FVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKM 523
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E + + + L AC H N+E+ ER ++L++E G Y+L+ N+ A GR+ +
Sbjct: 524 PMEPSRSIWGAV-LSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYS 582
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+ +R VM+ R K G S V
Sbjct: 583 DSIREVMNSRGVKKIAGCSSV 603
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 166/380 (43%), Gaps = 88/380 (23%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+FNT++ + ++ +KAF +Y+ + Q T+ D T+ +L++T ++
Sbjct: 99 IFNTMILGFPFSN--EKAFTIYRSMLQNGTYP--------DRQTFLYLLQTTKFVAEVK- 147
Query: 87 GTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+H G S Y+ +L+ YV G + + +LFDE+ +RN+V++N MI G
Sbjct: 148 --QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFA 205
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K G + LF +M RS+G EP + T+L +L Q G
Sbjct: 206 KVGNILGILELFHDM-------------------RSHG--LEPDDFTMLGLLLLCGQLGE 244
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE--------------- 250
+ + +H EK + ++ + N L+D Y KC + A K+F+
Sbjct: 245 TKLGKSVHAQIEK-SIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIA 303
Query: 251 ------------DI--SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
D+ + +++VSW S+ISG+A +G F RM +KP++VT
Sbjct: 304 GYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVT 363
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+++++A + G L G L+DM + G +E+A I IP
Sbjct: 364 IVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP 423
Query: 336 SEITDVVVRRILLGACSFHG 355
+ DV ++ +FHG
Sbjct: 424 EK--DVTTWTTMITGFAFHG 441
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 36/224 (16%)
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T P T L +L V + IH + G + + + N LI Y GC A
Sbjct: 126 TYPDRQTFLYLLQT---TKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECA 182
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL------- 298
+LF+++S +N+VS+ ++I GFA G +E F M+ GL+P+ T L
Sbjct: 183 RQLFDEMS--DRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCG 240
Query: 299 ----SVLNACSHGGLH----------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
+ L H + Y L+DM + L+ A K+ G P E V
Sbjct: 241 QLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDG-PMEKDTVSWN 299
Query: 345 RILLG---------ACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
I+ G AC + + V+ L GDYV
Sbjct: 300 TIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYV 343
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 235/441 (53%), Gaps = 77/441 (17%)
Query: 10 RIHSHLLTTNSLLHH--TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP--L 65
+IH+H+L TN L +H + +N ++ Y+ + P+ A +Y + LR L
Sbjct: 207 QIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIDM----------LRAGIL 256
Query: 66 FDSFTYSFLIRTCVTLSYP-NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
D +T + + ++L+Y +LG QLH+V ++GF+ Y + L+++Y +G L+ + K
Sbjct: 257 PDCYTLPIVFKA-LSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACK 315
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F++ R L +WN +I GL + G + A ++F ++ R +G
Sbjct: 316 VFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKL-------------------RQSG- 355
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS--------NCLIDTY 236
EP + TI++V A G + +H + F ++V+ N LID Y
Sbjct: 356 -LEPDDFTIVSVTSACGSLGNLELSLQMHKF-------VFQVKVTGKSNILMLNSLIDMY 407
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCG + A+K+F ++ +N+ SWTS+I G+AMHG K A+ENF+ M++ G+ PN+VT
Sbjct: 408 GKCGRMDLAMKVFSNMG--HRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVT 465
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL+AC HGG+ HYGC+VD+L +AG LE+A ++ +
Sbjct: 466 FVGVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEM 525
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + + ++ L+G C HGNVE+GE + + E+E N G YV++ NI A G + +A
Sbjct: 526 PMK-ANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEA 584
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+++R VM +R K PG SL
Sbjct: 585 QKMRDVMKQRQLAKVPGYSLA 605
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 218/418 (52%), Gaps = 69/418 (16%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
++NT++ YS +D+P++A +LY + I P ++FT+ FL+ +C LS
Sbjct: 1 MWNTMIRGYSRSDNPREAIVLY--MSMIAKGIAPP-----NNFTFPFLLNSCARLSSLEP 53
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G ++H+ I K GF+S ++V AL+++Y
Sbjct: 54 GHEVHSHIIKHGFESDLFVRNALIHLYSV------------------------------- 82
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN------GASTEPSEITILAVLPAI 200
+G L AR+LF+E R++VS+ ++ GY +N+ G E+T++AVL A
Sbjct: 83 FGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSDEVTLVAVLSAC 142
Query: 201 WQNGAVR-NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
+ GA +L H Y E FN I ++ ++D YAKCG I SAL++F + K
Sbjct: 143 ARLGAFDLGKRLYHQYIENGVFNQNTI-LTAAVMDMYAKCGSIDSALEIFRRVGKNMKTG 201
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
+ S+I+G A HG+G+ A+ F + GLKP+ VTF+ VL AC H GL
Sbjct: 202 FVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFES 261
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HYGC+VD+LGR G LE+A + +P E + V+ R LL AC HGNV
Sbjct: 262 MFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE-ANSVIWRALLSACRTHGNV 320
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++GE +K+LEME +G YVL+ NILA ++ +A ++R+VM++ K PG S +
Sbjct: 321 KIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYI 378
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 203/384 (52%), Gaps = 39/384 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T ++++ ++ +LG +HA K+G + +V +L+ MY S ++ + ++F
Sbjct: 104 DTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVF 163
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+PE + V+W VMI G G+++ AR LF+ ++ W ++ GY + N
Sbjct: 164 DEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLH 223
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP E I+ +L A GA+ IH Y + G +RVS LID Y
Sbjct: 224 MFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGL-PLTLRVSTGLIDMY 282
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A LF ++S +R N V W ++ISG AM G G+ A++ F M+K G+KP+ +T
Sbjct: 283 AKCGHLDLAKYLFNEMS-QRDN-VCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNIT 340
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F++VL ACS+ G+ HYGC++D+L R GR E+AE + +
Sbjct: 341 FIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRL 400
Query: 335 P---SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
P S + V R L AC HG + E ++ ++ER +G YVL+ N+ A +G++
Sbjct: 401 PKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGA-YVLLSNMYAALGKH 459
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
DA+R+R +M + K PG S +
Sbjct: 460 EDAKRVRNMMKLKGVEKVPGCSSI 483
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 144/354 (40%), Gaps = 55/354 (15%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL--GFLKDSSKLFDELP 130
L+ C+ + N Q HA + K G + +V + L+N G L + KLF +
Sbjct: 10 LLLHKCINM---NQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQ 66
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV-----SWTGILDGYTRM-NRSNGA 184
+ +N MI L+ GE A ++F + RN + + +L RM N G
Sbjct: 67 HPTICIFNTMIKALLLRGEFLNAIAVFSAI-FRNGIHPDTYTLPYVLKASARMTNIHLGE 125
Query: 185 STEPSEITILAVLPAIWQNGA---------VRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
S I + + + N +R+ + + + E +A V +I
Sbjct: 126 SIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQV--FDEMPELSAVSWTV---MIYG 180
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
YA G + +A +LF+ +V+ + W ++ISG+ + K + F MQ ++P+
Sbjct: 181 YANMGDVDTARELFDMATVKDTGI--WGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEA 238
Query: 296 TFLSVLNACSH-GGLHYGC--------------------LVDMLGRAGRLEQAEKIALGI 334
+++L+AC+H G L G L+DM + G L+ A+ + +
Sbjct: 239 IIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEM 298
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER-GNGGDYVLMYNILAG 387
D V ++ + G+ GE + +EME+ G D + +LA
Sbjct: 299 SQR--DNVCWNAMISGMAMDGD---GEGAIKLFMEMEKAGIKPDNITFIAVLAA 347
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 197/374 (52%), Gaps = 35/374 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
++ C + +G ++H + + + + ++ AL++MYV L D+ +LFD + ++
Sbjct: 364 VVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKD 423
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
+ +W M+ G K G+LE AR F++ P +N V W+ ++ GY++ N+ +
Sbjct: 424 VYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMME 483
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P E T+++VL A Q + IH Y + + N ++D YAKCG I
Sbjct: 484 RGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSID 543
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
+A ++F ++ +NL+SW ++I+G+A +G K A+ F++M+ +G +PN +TF+S+L A
Sbjct: 544 AATEVFS--TMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTA 601
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
CSHGGL HY C+VD+LGR G LE+A K+ +P + +
Sbjct: 602 CSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCE- 660
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
LL AC HGNVE+ +L ++ + G YVL+ N A ++ D R+R +M
Sbjct: 661 AAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLM 720
Query: 402 DERNALKFPGRSLV 415
++ K PG SL+
Sbjct: 721 KDKGVKKIPGYSLI 734
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 140/310 (45%), Gaps = 59/310 (19%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T ++NT++ Y A P AF + + Q LR DS ++ F ++ C
Sbjct: 221 NTFMWNTMIRGYQNARKPIFAFSFFVYMFQ--------LRVEMDSRSFVFALKACQQFET 272
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G ++ V+ K+GF + V L++ Y G LK++ ++FDE ++++VTW MI G
Sbjct: 273 VFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDG 332
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
E A +FE M +V EP+E+T++AV+ A
Sbjct: 333 YAAHDCSEEAMEVFELMLLSHV---------------------EPNEVTLIAVVSACSDM 371
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------- 255
G + + +H E++ + + N L+D Y KC C+ A +LF+ ++ +
Sbjct: 372 GNLEMGKRVHEKVEEKNMRC-SLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSM 430
Query: 256 ---------------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
RKN V W+++I+G++ + K +++ F M + G+ P
Sbjct: 431 VNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIE 490
Query: 295 VTFLSVLNAC 304
T +SVL+AC
Sbjct: 491 HTLVSVLSAC 500
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 13/180 (7%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
+ L G+L YA ++F + N W ++ GY + A E
Sbjct: 196 IAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEM 255
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ + L A Q V + ++ K GF+ ++ V N LI YA+ G + +A ++
Sbjct: 256 DSRSFVFALKACQQFETVFEGESVYCVVWKMGFDC-ELLVRNGLIHFYAERGLLKNARQV 314
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F++ S K++V+WT++I G+A H + A+E FE M ++PN VT ++V++ACS G
Sbjct: 315 FDESS--DKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMG 372
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 199/379 (52%), Gaps = 51/379 (13%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL----GF 118
+ L + FTY F+++ C + NLG +H + K GF V V LV+MY G
Sbjct: 5 KKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGG 64
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
++ + K+FDE+ + + V+W+ MI G V+ G A +LF EM + V
Sbjct: 65 IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVC------------ 112
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
P EIT+++VL A GA+ + + Y EK ++ +SN LID +AK
Sbjct: 113 ---------PDEITMVSVLSACTGLGALELGKWVESYVEKERVQK-NVELSNALIDMFAK 162
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
CG + A LF S+ +N+VSWTS+I G AMHG G AV FE M + G+ P+ V F+
Sbjct: 163 CGDVDKATNLFR--SMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFI 220
Query: 299 SVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPS 336
+L+ACSH GL HYGC+VDML RAG +++A K +P
Sbjct: 221 GLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPI 280
Query: 337 EITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396
+ + VV R L+ AC HG +++GE++TR+++ E + +YVL+ NI A + + R
Sbjct: 281 D-PNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTR 339
Query: 397 LRRVMDERNALKFPGRSLV 415
+R MD + K PG +++
Sbjct: 340 IREAMDMKGMKKIPGSTMI 358
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 221/422 (52%), Gaps = 44/422 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+L+ ++ Y P+KA L++ ++++ L P D S ++ C L
Sbjct: 158 VLWTLIIRAYVCVTFPEKALELFRTMREV------GLTP--DMVAISTVVSACGLLGDLG 209
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ +H I K G + +V++ L++ Y G L + + F E P +N+V WN MI V
Sbjct: 210 VAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILA 195
+ LE + LF+ MP R+VVSW ++ G+ R+ + A T P+ +T+L+
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L A +GA+ IH Y +K N D + + LID Y+KCG I A+++FE+ +
Sbjct: 330 TLSACASHGALDTGAWIHAYVDKNDMNR-DGSLDSSLIDMYSKCGDIDKAVQIFEEST-- 386
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
R++L +WTSI+ G AMHG G+ A+ F +M++ ++P+ VT + VL+AC+H GL
Sbjct: 387 RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWW 446
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR G L++A + +G+P E + ++ L AC
Sbjct: 447 YFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANE-IIWGAFLSACRV 505
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
H NVE+GE R++L ++ + V++ N+ A ++ + LR+ + ++ K PG S
Sbjct: 506 HNNVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCS 565
Query: 414 LV 415
+
Sbjct: 566 SI 567
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 137/319 (42%), Gaps = 74/319 (23%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
LRP + T+ +L++ V+ G ++HA + + GF +V+ AL+ YV+ G +
Sbjct: 87 LRP--NGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGK 144
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
++FDE+ + LV W ++I V E A LF M R V G T
Sbjct: 145 GRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM--REV--------GLT----- 189
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P + I V+ A G + + +H + EK G D VS+ LI TY +CG
Sbjct: 190 ------PDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEV-DAFVSSTLISTYGECGS 242
Query: 242 IFSALKLFEDI--------------SVERKNL---------------VSWTSIISGFAMH 272
+ A + F++ SVE NL VSW S+I GFA
Sbjct: 243 LDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARI 302
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGLHYGC------------------ 313
G + A+ F M+ G+ PN +T LS L+AC SHG L G
Sbjct: 303 GQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLD 362
Query: 314 --LVDMLGRAGRLEQAEKI 330
L+DM + G +++A +I
Sbjct: 363 SSLIDMYSKCGDIDKAVQI 381
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 214/411 (52%), Gaps = 63/411 (15%)
Query: 58 SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
S + + P + FT+ +++ C ++ G Q+H ++ K G +V T L+ MYV G
Sbjct: 109 SEATVEP--NQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCG 166
Query: 118 FLKDSSKLF---------------DEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
++D++ LF DE E N+V NVM+ G + G L+ AR LF+ M
Sbjct: 167 SMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMA 226
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTE---------------PSEITILAVLPAIWQNGAV 206
R+VVSW ++ GY + NG E P+ +T+++VLPAI + G +
Sbjct: 227 QRSVVSWNVMISGYAQ----NGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVL 282
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +H Y EK D+ + + L+D YAKCG I A+++FE + + N+++W ++I
Sbjct: 283 ELGKWVHLYAEKNKIRIDDV-LGSALVDMYAKCGSIEKAIQVFERLP--QNNVITWNAVI 339
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
G AMHG RM+K G+ P+ VT++++L+ACSH GL
Sbjct: 340 GGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGL 399
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+VD+LGRAG LE+AE++ L +P + D V+ + LLGA H N+++G R
Sbjct: 400 KPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDD-VIWKALLGASKMHKNIKIGMRAA 458
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++M + G YV + N+ A G + +R +M + + K PG S +
Sbjct: 459 EVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWI 509
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 84/287 (29%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS------------NGASTEPSEITILAV 196
++ YA S+F+++P RN +W ++ + A+ EP++ T +V
Sbjct: 64 DIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSV 123
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGF----------------------------------- 221
L A + + +HG K G
Sbjct: 124 LKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVD 183
Query: 222 -----------NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
F++ + N ++D YA+ G + +A +LF+ ++ ++++VSW +ISG+A
Sbjct: 184 DVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMA--QRSVVSWNVMISGYA 241
Query: 271 MHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH-GGLHYG---------------- 312
+G K A+E F RM ++G + PNRVT +SVL A S G L G
Sbjct: 242 QNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDD 301
Query: 313 ----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
LVDM + G +E+A ++ +P +V+ ++G + HG
Sbjct: 302 VLGSALVDMYAKCGSIEKAIQVFERLPQ--NNVITWNAVIGGLAMHG 346
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 222/420 (52%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ +S + +P+K+ +Y Q+ + L P D TY FL+++ LS LG
Sbjct: 822 WNFVIRGFSNSRNPEKSISVYIQMLRF------GLLP--DHMTYPFLMKSSSRLSNRKLG 873
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH + K G + +++ L++MY S + KLFDE+P +NLVTWN ++ K
Sbjct: 874 GSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKS 933
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
G++ AR +F+EM R+VV+W+ ++DGY + N A S++ +E+T+++V
Sbjct: 934 GDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSV 993
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
+ A GA+ + +H Y + + LID YAKCG I A +F SV+
Sbjct: 994 ICACAHLGALNRGKTVHRYILDVHL-PLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKE 1052
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+ + W +II G A HG + +++ F +M++ + P+ +TFL +L ACSHGGL
Sbjct: 1053 TDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHF 1112
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG ++ A +P + T ++ +L G C HG
Sbjct: 1113 FKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNG-CINHG 1171
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+E+ E V +K++E++ N G YV + N+ A ++ A +R M+++ K G S++
Sbjct: 1172 NLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSIL 1231
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 36/221 (16%)
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER----NLVTWNVMITGLVKWGELEYA 153
GF+ + T LV G D+ K D++ ++V I GL+K ++
Sbjct: 539 GFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRG 598
Query: 154 RSLFEEM----PCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
LF ++ C +V+++ ++ + R+ A +E+ + P +
Sbjct: 599 LELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTV--------- 649
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN--LVSWTSIIS 267
N +ID + K G I L + + KN ++++TS+I
Sbjct: 650 -----------------ATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIH 692
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
G G A+ + M+ PNR+TF++++ G
Sbjct: 693 GLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCG 733
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 190/334 (56%), Gaps = 35/334 (10%)
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
+ G + ++ +LFD++P RN+V WN MI V+ ++ A SLF EMP +N +SWT ++
Sbjct: 130 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVI 189
Query: 173 DGYTRMNRSNGA---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
+GY RM + + A +P + T L + A++ + +H K G+ A
Sbjct: 190 NGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGY-A 248
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D+ VSN LI YAKCG I SA LF+DI + ++VSW S+I+ +A++G G+ A++ F
Sbjct: 249 TDLFVSNALITMYAKCGSISSAELLFKDI--DHFDVVSWNSLIAAYALNGNGREALKLFH 306
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
+M+ G+ P+ VTF+ +L+ACSH GL HY C+VD+LGRA
Sbjct: 307 KMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRA 366
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
GRLE+A ++ G+ + + LLGAC HGN+E+ + K+LE E +YVL+
Sbjct: 367 GRLEEAFQLVRGMKIN-ANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLL 425
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ A GR+ + R+RR+M E+ A K PG S +
Sbjct: 426 SNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 459
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 138/310 (44%), Gaps = 45/310 (14%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+V Y ++ +LFD +P ++LV+WN M+TG + GE+ FEEM R+VVS
Sbjct: 32 AMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVS 91
Query: 168 WTGILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
W ++DG+ + N + P+ ++ + +L + G + +R F
Sbjct: 92 WNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEA--------RRLF 143
Query: 222 NAFDIR---VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+ IR N +I Y + + A+ LF + + KN +SWT++I+G+ G A
Sbjct: 144 DQMPIRNVVAWNAMIAAYVQNCHVDEAISLF--MEMPEKNSISWTTVINGYVRMGKLDEA 201
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDM 317
+ +M KP++ TF L++C+H L G L+ M
Sbjct: 202 RQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITM 260
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
+ G + AE + I + DVV L+ A + +GN ++ K +E+E G D
Sbjct: 261 YAKCGSISSAELLFKDI--DHFDVVSWNSLIAAYALNGNGREALKLFHK-MEVE-GVAPD 316
Query: 378 YVLMYNILAG 387
V IL+
Sbjct: 317 EVTFVGILSA 326
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 109/284 (38%), Gaps = 65/284 (22%)
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
P R D T++ + +C L+ +G QLH ++ K G+ + ++V+ AL+ MY G +
Sbjct: 209 PYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSIS 268
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ LF ++ ++V+WN +I G A LF +M V
Sbjct: 269 SAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVA-------------- 314
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----------- 229
P E+T + +L A G + +G F V
Sbjct: 315 -------PDEVTFVGILSACSHVGLI-----------DQGLKLFKCMVQAYNIEPLAEHY 356
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQ 286
C++D + G + A +L + + N W +++ +HG + K A E
Sbjct: 357 ACMVDLLGRAGRLEEAFQLVRGMKIN-ANAGIWGALLGACRIHGNLELAKFAAEKL---- 411
Query: 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
+ +P++ + +Y L +M AGR ++ ++
Sbjct: 412 -LEFEPHKTS-------------NYVLLSNMQAEAGRWDEVARV 441
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 240/484 (49%), Gaps = 89/484 (18%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
N ++ SHL T H F L+ F SL S L Y QI+ H HSP L
Sbjct: 20 NQLKQLQSHLTTLGHSQTHFYAFK-LIRFCSLNLSN----LHYAH--QIFNHIHSPNIYL 72
Query: 66 FDSFTYSFLIRTCVTLS----------------YPN---------LGTQLHAVISKVGFQ 100
F + +F + T YP+ L +HA I K GF
Sbjct: 73 FTAIITAFSSQQHTTFKLFKTMLNSNIRPNNFIYPHVLKSVKERFLVDLVHAQIVKCGFL 132
Query: 101 SHVYVNTALVNMYVS-LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
++ V T+LV+ Y LG L+D+ K+FDE+ ERN+V + V+++G ++ G++E +F+E
Sbjct: 133 NYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDE 192
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTE------------------------PSEITILA 195
M R+V +W ++ G T+ NG +E P+++T++
Sbjct: 193 MVDRDVPAWNAVISGCTQ----NGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVC 248
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A G ++ + IHGY + GF D VSN L+D Y KCG + A K+FE +
Sbjct: 249 VLSACGHGGMLQLGKWIHGYVYRHGF-VVDSFVSNALVDMYGKCGSLELARKVFE--MDQ 305
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNACSHGGL---- 309
RK L SW S+I+ +A+HG + A+ FE+M + G++P+ VTF+ +LNAC+HGGL
Sbjct: 306 RKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQG 365
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGCL+D+LGRAG+ ++A + G+ E D VV LL C
Sbjct: 366 CGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSME-PDEVVWGSLLNGC 424
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG ++ E +K++E++ NGG ++ NI +G++ + + + ++ + K PG
Sbjct: 425 KVHGRTDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVWSKLKQQKSYKIPG 484
Query: 412 RSLV 415
S +
Sbjct: 485 CSWI 488
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/451 (29%), Positives = 227/451 (50%), Gaps = 71/451 (15%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQ---------------- 53
++H+ + TT ++H ++ N LL+ + A LL+ ++++
Sbjct: 21 QVHAQV-TTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79
Query: 54 -IYTHSHSPLRPLF------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106
Y R L D+F+ F+I+ C +G +H+ + K G +V
Sbjct: 80 GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVC 139
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
+ LV+MY G + ++ +LFD +P+++LVT VMI G + G+ + LF++M
Sbjct: 140 STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMR----- 194
Query: 167 SWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
DG+ P ++ ++ ++ A + GA+ +L+H Y R + + D+
Sbjct: 195 -----RDGFV-----------PDKVAMVTIVNACAKLGAMNKARLVHDYVCARRY-SLDV 237
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ +ID YAKCG I S+ ++F+ +E+KN++SW+++I + HG G+ A+E F M
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFD--RMEQKNVISWSAMIGAYGYHGQGREALELFHMML 295
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
G+ PNR+TF+S+L ACSH GL HY C+VD+LGRAGRL
Sbjct: 296 NSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRL 355
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+QA ++ + E D + LGAC H V++ E+ + +L ++ N G Y+L+ NI
Sbjct: 356 DQALRLIENMEVE-KDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNI 414
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A GR+ D ++R +M +R K PG + +
Sbjct: 415 YANAGRWKDVAKIRNLMAKRRLKKIPGYTWI 445
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 238/471 (50%), Gaps = 95/471 (20%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++N+L+ YS +D P A LL++++ S L P + FT F+++ C S
Sbjct: 178 NKFMYNSLIRGYSNSDDPIDAVLLFRRM------ICSGLSP--NEFTLPFVLKACGCKSA 229
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI-- 141
+H + K+G S V+V AL+ +YV G + + KLFD++ ++ LV+WN MI
Sbjct: 230 YWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEI 289
Query: 142 TGL-----------------------------------VKW----------GELEYARSL 156
TG+ V W G +E AR +
Sbjct: 290 TGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQI 349
Query: 157 FEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAV 206
F++MP +NVVSW ++ Y R N+ + P E T++++L A Q G +
Sbjct: 350 FDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDL 409
Query: 207 RNCQLIHGYG-EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ IH Y +G A+ + + N LID YAKCG + +AL +F + + KNLVSW I
Sbjct: 410 VMGKKIHNYILSNKG--AYGVTLYNSLIDMYAKCGPVVTALDIF--LEMPGKNLVSWNVI 465
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I A+HG G A++ FE MQ G P+ +T +L+ACSH GL
Sbjct: 466 IGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYR 525
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C+VD+LGR G L +A ++ +P + DVVV LLGAC HGNVE+G+++
Sbjct: 526 VXREIEHYACMVDLLGRGGLLGEAIELIGRMPMK-PDVVVWGALLGACRIHGNVEIGKQI 584
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
+++LE+E +GG YVL+ NI R+ D +++R++M +R K GR++
Sbjct: 585 LKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKK--GRAI 633
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 119/315 (37%), Gaps = 110/315 (34%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVL 197
G+L+YA+ +F+++P N + ++ GY+ + R + P+E T+ VL
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS---- 253
A A L+HG K G + + V N LI Y CG I A KLF+DI+
Sbjct: 222 KACGCKSAYWEAVLVHGLAIKLGIGSL-VFVQNALIAVYVVCGLIHCARKLFDDITDKTL 280
Query: 254 -----------------------------------------VERKNLVSWTSIISGFAMH 272
+ KN+VSWTS+IS +A H
Sbjct: 281 VSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQH 340
Query: 273 -------------------------------GMGKAAVENFERMQKVGLKPNRVTFLSVL 301
G + A++ F +M+ + P+ T +S+L
Sbjct: 341 GSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSIL 400
Query: 302 NACSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACS G +H Y L+DM + G + A I L +P + +
Sbjct: 401 AACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGK--N 458
Query: 341 VVVRRILLGACSFHG 355
+V +++GA + HG
Sbjct: 459 LVSWNVIIGALALHG 473
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 212/373 (56%), Gaps = 49/373 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT++ ++ +C + S LG Q+H+++ K F+SH++V ++L++MY G + ++ ++F
Sbjct: 110 NEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 169
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D LPER++V+ +I+G + G E A LD + R+ R S
Sbjct: 170 DGLPERDVVSCTAIISGYAQLGLDEEA------------------LDLFRRLQREGMRS- 210
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ +T +VL A+ A+ + + +H + R F + + N LID Y+KCG + +
Sbjct: 211 --NYVTYASVLTALSGLAALDHGRQVHSH-VLRAKLPFYVVLQNSLIDMYSKCGSLTYSR 267
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACS 305
++F+ S+ + ++SW +++ G++ HG+G+ AVE F+ M++ +KP+ VTFL+VL+ CS
Sbjct: 268 RIFD--SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 325
Query: 306 HGGL-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
HGG+ HYGC+VD+ GRAGR+E+A + +P E T
Sbjct: 326 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT-AA 384
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
+ LLGAC H NV +GE V R++LE+E N G+YV++ N+ A GR+ D +R +M
Sbjct: 385 IWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMK 444
Query: 403 ERNALKFPGRSLV 415
E+ +K PGRS +
Sbjct: 445 EKAVIKEPGRSWI 457
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 52/340 (15%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y ++ C++ + G ++HA + K ++ VY+ T L+ +Y L D+ ++ DE+P
Sbjct: 13 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
ERN+V+W MI+G + G A LF EM ++ G T P+E
Sbjct: 73 ERNVVSWTAMISGYSQRGYASEALHLFVEM----------LMSG-----------TAPNE 111
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T VL + + + + IH K F + I V + L+D YAK G I A ++F+
Sbjct: 112 FTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH-IFVGSSLLDMYAKAGKICEARRVFD 170
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGL 309
+ +++VS T+IISG+A G+ + A++ F R+Q+ G++ N VT+ SVL A S L
Sbjct: 171 GLP--ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 228
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
+G L+DM + G L + +I +P V+ +L
Sbjct: 229 DHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERT--VISWNAMLV 286
Query: 350 ACSFHGNVEMGERVTR--KVLEMERGNGGDYVLMYNILAG 387
S HG +G K+++ E D V +L+G
Sbjct: 287 GYSKHG---LGREAVELFKLMKEENKVKPDSVTFLAVLSG 323
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 222/424 (52%), Gaps = 45/424 (10%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
+T+ + ++ Y+ ++A L ++L + S + P S T F C +
Sbjct: 381 FRNTISWAGMIAGYAQNGRSEEALGLLQELHR------SGMLPSLSSLTSIFF--ACSNI 432
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
GTQ+H++ KVG Q + + AL+ MY ++ + ++F + +++V+WN +
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------STEPSEIT 192
LV+ L+ AR+ F+ M R+ VSWT I+ Y +SN A E
Sbjct: 493 AALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSP 552
Query: 193 ILAVLPAIWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
IL +L + + GA + Q IH K G ++ ++ V+N LI Y KCGC S ++F+
Sbjct: 553 ILTILLGVCGSLGASKIGQQIHTVAIKLGMDS-ELIVANALISMYFKCGCADSR-RIFD- 609
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+E +++ +W +II+G+A HG+G+ A++ ++ M+ G+ PN VTF+ +LNACSH GL
Sbjct: 610 -LMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVD 668
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HY C+VD+LGR G ++ AE+ +P E D V+ LLG
Sbjct: 669 EGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIE-PDTVIWSALLG 727
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC H N E+G+R K+ +E N G+YV++ NI + +G + + +R++M ++ +K
Sbjct: 728 ACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE 787
Query: 410 PGRS 413
PG S
Sbjct: 788 PGCS 791
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 151/323 (46%), Gaps = 49/323 (15%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+ TAL+ G + D+ LF+++PE +V+WN +ITG ++ G + A+ LF++MP
Sbjct: 322 IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381
Query: 163 RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLI 212
RN +SW G++ GY + RS A PS ++ ++ A A+ +
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441
Query: 213 HGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
H K G FN+F N LI Y KC + A ++F + K++VSW S ++
Sbjct: 442 HSLAVKVGCQFNSF---ACNALITMYGKCRNMEYARQVFSRMVT--KDIVSWNSFLAALV 496
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
+ + A F+ M L + V++ ++++A +H EQ+ +
Sbjct: 497 QNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHA-----------------EQSNE- 534
Query: 331 ALG------IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
A+G E+ + + ILLG C G ++G+++ +++ G + ++ +
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL--GMDSELIVANAL 592
Query: 385 LAGVGR--YVDAERLRRVMDERN 405
++ + D+ R+ +M+ER+
Sbjct: 593 ISMYFKCGCADSRRIFDLMEERD 615
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 147/316 (46%), Gaps = 42/316 (13%)
Query: 41 PKKAFLLYKQLQQIYTHSHSP--LRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKV 97
P++ + + + Y H+ P R L+D+ + + + LS Y LG L A +
Sbjct: 61 PRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEA---RR 117
Query: 98 GFQSHVYVNT----ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA 153
F + NT A+++ YV G + + +LFD +P R++ +WN M+TG ++ A
Sbjct: 118 VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDA 177
Query: 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQN 203
R+LFE+MP RN+VSWT ++ GY R+ A P + + L A+
Sbjct: 178 RNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGL 237
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF-SALKLFEDISVERKNLVSW 262
G + + + K GF D+ + +++ Y++ + +A+K FE + +ER N +W
Sbjct: 238 GNLDVLESLRVLALKTGFER-DVVIGTAILNVYSRDTSVLDTAIKFFESM-IER-NEYTW 294
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG 322
+++I+ + G AA+ +ER + V ++ A L+ L + G
Sbjct: 295 STMIAALSHGGRIDAAIAVYER--------DPVKSIACRTA----------LITGLAQCG 336
Query: 323 RLEQAEKIALGIPSEI 338
R++ A + IP I
Sbjct: 337 RIDDARILFEQIPEPI 352
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 96 KVGFQSHVYVNTALVNMYV-SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K GF+ V + TA++N+Y L + K F+ + ERN TW+ MI L G ++ A
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAI 311
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
+++E P +++ T ++ G + R + A +I V+ W
Sbjct: 312 AVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVS--W------------- 356
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
N LI Y + G + A +LF+ + +N +SW +I+G+A +G
Sbjct: 357 ---------------NALITGYMQNGMVNEAKELFDKMPF--RNTISWAGMIAGYAQNGR 399
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+ A+ + + + G+ P+ + S+ ACS+
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
LG + ++ ++FD +P R+++ WN MI+ G + AR L++ + N+ + +L GY
Sbjct: 47 LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106
Query: 176 TRMNRSNGAST------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF---DI 226
R+ R A E + + A++ QNG + +R F+A D+
Sbjct: 107 GRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMA--------RRLFDAMPSRDV 158
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
N ++ Y + A LFE + +NLVSWT +ISG+ A + F +M
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216
Query: 287 KVGLKPNRVTFLSVLNA 303
+ GL P++ F S L+A
Sbjct: 217 REGLLPDQSNFASALSA 233
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 222/424 (52%), Gaps = 45/424 (10%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
+T+ + ++ Y+ ++A L ++L + S + P S T F C +
Sbjct: 381 FRNTISWAGMIAGYAQNGRSEEALGLLQELHR------SGMLPSLSSLTSIFF--ACSNI 432
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
GTQ+H++ KVG Q + + AL+ MY ++ + ++F + +++V+WN +
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------STEPSEIT 192
LV+ L+ AR+ F+ M R+ VSWT I+ Y +SN A E
Sbjct: 493 AALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSP 552
Query: 193 ILAVLPAIWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
IL +L + + GA + Q IH K G ++ ++ V+N LI Y KCGC S ++F+
Sbjct: 553 ILTILLGVCGSLGASKIGQQIHTVAIKLGMDS-ELIVANALISMYFKCGCADSR-RIFD- 609
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+E +++ +W +II+G+A HG+G+ A++ ++ M+ G+ PN VTF+ +LNACSH GL
Sbjct: 610 -LMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVD 668
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HY C+VD+LGR G ++ AE+ +P E D V+ LLG
Sbjct: 669 EGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIE-PDTVIWSALLG 727
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC H N E+G+R K+ +E N G+YV++ NI + +G + + +R++M ++ +K
Sbjct: 728 ACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE 787
Query: 410 PGRS 413
PG S
Sbjct: 788 PGCS 791
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 151/323 (46%), Gaps = 49/323 (15%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+ TAL+ G + D+ LF+++PE +V+WN +ITG ++ G + A+ LF++MP
Sbjct: 322 IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381
Query: 163 RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLI 212
RN +SW G++ GY + RS A PS ++ ++ A A+ +
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441
Query: 213 HGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
H K G FN+F N LI Y KC + A ++F + K++VSW S ++
Sbjct: 442 HSLAVKVGCQFNSF---ACNALITMYGKCRNMEYARQVFSRMVT--KDIVSWNSFLAALV 496
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
+ + A F+ M L + V++ ++++A +H EQ+ +
Sbjct: 497 QNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHA-----------------EQSNE- 534
Query: 331 ALG------IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
A+G E+ + + ILLG C G ++G+++ +++ G + ++ +
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL--GMDSELIVANAL 592
Query: 385 LAGVGR--YVDAERLRRVMDERN 405
++ + D+ R+ +M+ER+
Sbjct: 593 ISMYFKCGCADSRRIFDLMEERD 615
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 147/316 (46%), Gaps = 42/316 (13%)
Query: 41 PKKAFLLYKQLQQIYTHSHSP--LRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKV 97
P++ + + + Y H+ P R L+D+ + + + LS Y LG L A +
Sbjct: 61 PRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEA---RR 117
Query: 98 GFQSHVYVNT----ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA 153
F + NT A+++ YV G + + +LFD +P R++ +WN M+TG ++ A
Sbjct: 118 VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDA 177
Query: 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQN 203
R+LFE+MP RN+VSWT ++ GY R+ A P + + L A+
Sbjct: 178 RNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGL 237
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF-SALKLFEDISVERKNLVSW 262
G + + + K GF D+ + +++ Y++ + +A+K FE + +ER N +W
Sbjct: 238 GNLDVLESLRVLALKTGFER-DVVIGTAILNVYSRDTSVLDTAIKFFESM-IER-NEYTW 294
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG 322
+++I+ + G AA+ +ER + V ++ A L+ L + G
Sbjct: 295 STMIAALSHGGRIDAAIAVYER--------DPVKSIACRTA----------LITGLAQCG 336
Query: 323 RLEQAEKIALGIPSEI 338
R++ A + IP I
Sbjct: 337 RIDDARILFEQIPEPI 352
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 96 KVGFQSHVYVNTALVNMYV-SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K GF+ V + TA++N+Y L + K F+ + ERN TW+ MI L G ++ A
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAI 311
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
+++E P +++ T ++ G + R + A +I V+ W
Sbjct: 312 AVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVS--W------------- 356
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
N LI Y + G + A +LF+ + +N +SW +I+G+A +G
Sbjct: 357 ---------------NALITGYMQNGMVNEAKELFDKMPF--RNTISWAGMIAGYAQNGR 399
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+ A+ + + + G+ P+ + S+ ACS+
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
LG + ++ ++FD +P R+++ WN MI+ G + AR L++ + N+ + +L GY
Sbjct: 47 LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106
Query: 176 TRMNRSNGAST------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF---DI 226
R+ R A E + + A++ QNG + +R F+A D+
Sbjct: 107 GRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMA--------RRLFDAMPSRDV 158
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
N ++ Y + A LFE + +NLVSWT +ISG+ A + F +M
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216
Query: 287 KVGLKPNRVTFLSVLNA 303
+ GL P++ F S L+A
Sbjct: 217 REGLLPDQSNFASALSA 233
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 200/380 (52%), Gaps = 33/380 (8%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D TY F+ + LS L +H I+K G ++ +L++MY S G + + K+F
Sbjct: 104 DHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVF 163
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
DE+ RN V+WN M+ G K G+L+ A +F MP R+VVSW+ ++DG +
Sbjct: 164 DEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALA 223
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
R + + +T+++VL A GA+ + +H Y F + + L+D Y
Sbjct: 224 IFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMR-FTLVLRTSLMDMY 282
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG I A+ +F + +++ +++ W +II G A HG+ ++E F+ MQ +G+ P+ +T
Sbjct: 283 AKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEIT 342
Query: 297 FLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+L + +AC+HGGL HY C+VD+L RAG+L +A +P
Sbjct: 343 YLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMP 402
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
E T ++ +L G C H ++ ERV RK++E+E + G Y+ + N+ AGV + +A
Sbjct: 403 MEPTASMLGALLNG-CMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNAR 461
Query: 396 RLRRVMDERNALKFPGRSLV 415
+R M+ R K PG S V
Sbjct: 462 MMREAMERRGVKKSPGFSFV 481
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 44/306 (14%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYV--SLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+ A G H + L++ S G + S ++F ++P + WN +I G K
Sbjct: 23 QIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSK 82
Query: 147 WGELEYARSLFEEM----PCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
+ S+F +M C + +++ + R++ A I +W
Sbjct: 83 GKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIA----KEGLWF 138
Query: 203 NGAVRNCQLIHGYGE-------KRGFNAFDIRVS---NCLIDTYAKCGCIFSALKLFEDI 252
+ + N LIH YG ++ F+ IR S N ++D YAKCG + SA ++F
Sbjct: 139 DRFIAN-SLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFX-- 195
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHY 311
S+ +++VSW+S+I G G A+ FERM+ VG K N VT +SVL AC+H G L
Sbjct: 196 SMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEX 255
Query: 312 G--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
G L+DM + G +E+A + G+P + TDV++ ++G
Sbjct: 256 GRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGL 315
Query: 352 SFHGNV 357
+ HG V
Sbjct: 316 ATHGLV 321
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 211/384 (54%), Gaps = 51/384 (13%)
Query: 54 IYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113
+++H H P FD FT+ ++++ + +H ++ K+GF S++YV AL+N Y
Sbjct: 85 LFSHMHRTNVP-FDHFTFPLILKSSKLNPH-----CIHTLVLKLGFHSNIYVQNALINSY 138
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
+ G L S KLFDE+P R+L++W+ +I+ K G + A +LF++M + + IL
Sbjct: 139 GTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKE----SDIL- 193
Query: 174 GYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
P + +L+V+ A+ GA+ +H + + G N + + + LI
Sbjct: 194 --------------PDGVVMLSVISAVSSLGALELGIWVHAFISRIGVN-LTVSLGSALI 238
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y++CG I ++K+F+++ +N+V+WT++I+G A+HG G+ A+E F M + GLKP+
Sbjct: 239 DMYSRCGDIDRSVKVFDEMP--HRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPD 296
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
R+ F+ VL ACSHGGL HYGC+VD+LGRAG + +A
Sbjct: 297 RIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFV 356
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
G+ + V+ R LLGAC H + + E+ ++ E++ + GDYVL+ N GVG +
Sbjct: 357 EGMRVR-PNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNW 415
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
V E +R M E +K PG SLV
Sbjct: 416 VKKEGVRNSMRESKIVKEPGLSLV 439
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 189/337 (56%), Gaps = 45/337 (13%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG-- 174
G L ++ LF+ +PER+L +WN MITGL++ G+L AR LF EMP +NV+SWT ++ G
Sbjct: 232 GLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCV 291
Query: 175 -----------YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
++RM +NGA +P++ T ++VL A + Q +H K +
Sbjct: 292 QEGESEEALKIFSRMLSTNGA--KPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQD 349
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
VS LI+ Y+KCG + +A K+F+D +++LVSW II+ +A HG GK A+ F+
Sbjct: 350 STFVVS-ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFK 408
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
M+K G KP+ VT++ +L+ACSH GL HY CLVD+ GRA
Sbjct: 409 EMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRA 468
Query: 322 GRLEQAEKIALGIPSEITDVVVRRI---LLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRL++ A G + R+ LL C+ H NV++G++ +K+LE+E N G Y
Sbjct: 469 GRLKE----AFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTY 524
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+L+ NI A G++ +A R+R M ++ K PG S +
Sbjct: 525 LLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 561
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 148/324 (45%), Gaps = 43/324 (13%)
Query: 63 RPLFDSFTYSFLIR-TCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
R LFD +I T V Y G + + +V + +V TA+V Y+ +
Sbjct: 87 RRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKI 146
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
D+ KLF+E+P +N+V+WN MI G + G ++ A LFE+MP RNVVSW ++ +
Sbjct: 147 SDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCG 206
Query: 180 RSNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
R A E I+ A++ + L E+ D+ N +I
Sbjct: 207 RIEEARRLFDRMPERDVISWTAMIAGLLDEA----LDLFERMPER------DLPSWNTMI 256
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKP 292
+ G + A KLF ++ +KN++SWT++I+G G + A++ F RM G KP
Sbjct: 257 TGLIQNGDLRRARKLFNEMP--KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKP 314
Query: 293 NRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIA 331
N+ TF+SVL ACS+ GL G L++M + G L A K+
Sbjct: 315 NQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMF 374
Query: 332 LGIPSEITDVVVRRILLGACSFHG 355
+ D+V ++ A + HG
Sbjct: 375 DDGMTSQRDLVSWNGIIAAYAHHG 398
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 126/283 (44%), Gaps = 41/283 (14%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------S 185
N+ N MIT L K G + AR LF+EM +V++WT ++ GY + A
Sbjct: 66 NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
+ + +T A++ ++ + + + + + ++ N +ID YA+ G I SA
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSW-----NTMIDGYAQNGRIDSA 180
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR--VTFLSVLNA 303
+ LFE + +N+VSW +++S A G + A F+RM P R +++ +++
Sbjct: 181 MYLFEKMP--ERNVVSWNTVMSMLAQCGRIEEARRLFDRM------PERDVISWTAMIAG 232
Query: 304 CSHGGLH------------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
L + ++ L + G L +A K+ +P + +V+ ++ C
Sbjct: 233 LLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK--NVISWTTMITGC 290
Query: 352 SFHGNVEMGERVTRKVLEME--RGNGGDYVLMYNI---LAGVG 389
G E ++ ++L + N G +V + LAG+G
Sbjct: 291 VQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLG 333
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 193/362 (53%), Gaps = 36/362 (9%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+H + G + V ALV+MY + + K+FD + R++V+W +++GL
Sbjct: 141 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLA 200
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
+ G+++ AR LF+ MP R+ VSWT ++DGY R A + E T+++
Sbjct: 201 RLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVS 260
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q GA+ + + Y ++G D V N LID Y+KCG I AL +F+ +
Sbjct: 261 VITACAQLGALEMGEWVRVYMSRQGIK-MDAFVGNALIDMYSKCGSIERALDVFK--GMH 317
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++ +WT+II G A++G + A+E F RM +V P+ VTF+ VL AC+H GL
Sbjct: 318 HRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGRE 377
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC++D+LGRAG++ +A +P + + LL AC
Sbjct: 378 FFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPM-TPNSTIWGTLLAACRV 436
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN E+GE V ++LE++ N Y+L+ NI A R+ D RLR + E+ K PG S
Sbjct: 437 HGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCS 496
Query: 414 LV 415
L+
Sbjct: 497 LI 498
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 40/254 (15%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+ + ++ Y A ++A +++++Q Y++ + D FT +I C L
Sbjct: 220 TVSWTAMIDGYVWAARFREALEMFREMQ--YSNVSA------DEFTMVSVITACAQLGAL 271
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+G + +S+ G + +V AL++MY G ++ + +F + R+ TW +I GL
Sbjct: 272 EMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGL 331
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G E A +F RM R S P E+T + VL A G
Sbjct: 332 AVNGYEEEAIEMFH------------------RMIR---VSETPDEVTFIGVLTACTHAG 370
Query: 205 AVRNCQ-----LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
V + +I Y A ++ C+ID + G I AL + + + N
Sbjct: 371 LVDKGREFFLSMIEAYN-----IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMT-PNS 424
Query: 260 VSWTSIISGFAMHG 273
W ++++ +HG
Sbjct: 425 TIWGTLLAACRVHG 438
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
V+W ++ISG G + +F M + G P VT++SVL+AC G
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKG 135
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 220/421 (52%), Gaps = 49/421 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + Y+ + PK+A L+ Q+ + + P D T+ I +C ++ P L
Sbjct: 226 WNAMQSAYAQKECPKEALNLFHQMLE------EGITP--DDTTWVVTISSCSSIGDPTLA 277
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL-PERNLVTWNVMITGLVK 146
+ +I + + +V TAL++M+ G L+ + +FDEL +RN VTWN+MI+ +
Sbjct: 278 DSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTR 337
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS-----------NGASTEPSEITILA 195
G+L AR LF+ MP R+VVSW ++ GY + S + +P E+TI +
Sbjct: 338 VGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIAS 397
Query: 196 VLPAIWQNGAVR----NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
VL A GA++ ++ K G + F N LI Y+KCG + A ++F+
Sbjct: 398 VLSACGHIGALKLSYWVLDIVREKNIKLGISGF-----NSLIFMYSKCGSVADAHRIFQT 452
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +++VS+ ++ISGFA +G GK A++ M++ G++P+ VT++ VL ACSH GL
Sbjct: 453 MGT--RDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLN 510
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C+VD+LGRAG L++A+ + +P + V LL A H
Sbjct: 511 EGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMK-PHAGVYGSLLNASRIH 569
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
V +GE K+ E+E N G+YVL+ NI A GR+ D +R+R +M + K G S
Sbjct: 570 KRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSW 629
Query: 415 V 415
V
Sbjct: 630 V 630
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 197/478 (41%), Gaps = 118/478 (24%)
Query: 9 TRIHSHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
TR+H+H +S+ + +++ +L +YS + + L+K THS + LR
Sbjct: 44 TRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK-----CTHSLN-LR 97
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P F Y +LI+ G HA + K+G ++ A+++MY G + +
Sbjct: 98 P--QPFVYIYLIKLA-----GKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLAR 150
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
LF+++ ER L WN MI+G K G A LF MP RN+++WT ++ GY +M
Sbjct: 151 NLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLES 210
Query: 184 ASTEPSEITILAVLP--AIWQNGAVRNC-----QLIHGYGEKRGFNAFD----IRVSNC- 231
A E+ +V+ A+ A + C L H E+ G D + +S+C
Sbjct: 211 ARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEE-GITPDDTTWVVTISSCS 269
Query: 232 -----------------------------LIDTYAKCGCIFSALKLFEDISVER------ 256
L+D +AK G + A +F+++ +R
Sbjct: 270 SIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWN 329
Query: 257 ------------------------KNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLK 291
+++VSW S+I+G+A +G ++E F+ M + ++
Sbjct: 330 IMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQ 389
Query: 292 PNRVTFLSVLNACSH-GGLH--------------------YGCLVDMLGRAGRLEQAEKI 330
P+ VT SVL+AC H G L + L+ M + G + A +I
Sbjct: 390 PDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRI 449
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-ERGNGGDYVLMYNILAG 387
+ + DVV L+ + +G+ G+ + VL M E G D+V +L
Sbjct: 450 FQTMGTR--DVVSFNTLISGFAANGH---GKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 220/421 (52%), Gaps = 49/421 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + Y+ + PK+A L+ Q+ + + P D T+ I +C ++ P L
Sbjct: 226 WNAMQSAYAQKECPKEALNLFHQMLE------EGITP--DDTTWVVTISSCSSIGDPTLA 277
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL-PERNLVTWNVMITGLVK 146
+ +I + + +V TAL++M+ G L+ + +FDEL +RN VTWN+MI+ +
Sbjct: 278 DSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTR 337
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS-----------NGASTEPSEITILA 195
G+L AR LF+ MP R+VVSW ++ GY + S + +P E+TI +
Sbjct: 338 VGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIAS 397
Query: 196 VLPAIWQNGAVR----NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
VL A GA++ ++ K G + F N LI Y+KCG + A ++F+
Sbjct: 398 VLSACGHIGALKLSYWVLDIVREKNIKLGISGF-----NSLIFMYSKCGSVADAHRIFQT 452
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +++VS+ ++ISGFA +G GK A++ M++ G++P+ VT++ VL ACSH GL
Sbjct: 453 MGT--RDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLN 510
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C+VD+LGRAG L++A+ + +P + V LL A H
Sbjct: 511 EGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMK-PHAGVYGSLLNASRIH 569
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
V +GE K+ E+E N G+YVL+ NI A GR+ D +R+R +M + K G S
Sbjct: 570 KRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSW 629
Query: 415 V 415
V
Sbjct: 630 V 630
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 197/478 (41%), Gaps = 118/478 (24%)
Query: 9 TRIHSHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
TR+H+H +S+ + +++ +L +YS + + L+K THS + LR
Sbjct: 44 TRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK-----CTHSLN-LR 97
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P F Y +LI+ G HA + K+G ++ A+++MY G + +
Sbjct: 98 P--QPFVYIYLIKLA-----GKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLAR 150
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
LF+++ ER L WN MI+G K G A LF MP RN+++WT ++ GY +M
Sbjct: 151 NLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLES 210
Query: 184 ASTEPSEITILAVLP--AIWQNGAVRNC-----QLIHGYGEKRGFNAFD----IRVSNC- 231
A E+ +V+ A+ A + C L H E+ G D + +S+C
Sbjct: 211 ARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEE-GITPDDTTWVVTISSCS 269
Query: 232 -----------------------------LIDTYAKCGCIFSALKLFEDISVER------ 256
L+D +AK G + A +F+++ +R
Sbjct: 270 SIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWN 329
Query: 257 ------------------------KNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLK 291
+++VSW S+I+G+A +G ++E F+ M + ++
Sbjct: 330 IMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQ 389
Query: 292 PNRVTFLSVLNACSH-GGLH--------------------YGCLVDMLGRAGRLEQAEKI 330
P+ VT SVL+AC H G L + L+ M + G + A +I
Sbjct: 390 PDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRI 449
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-ERGNGGDYVLMYNILAG 387
+ + DVV L+ + +G+ G+ + VL M E G D+V +L
Sbjct: 450 FQTMGTR--DVVSFNTLISGFAANGH---GKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 199/364 (54%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG LH K+G ++HV V TA++ MY G K + +FD + ++N VTWN MI G
Sbjct: 91 LGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGY 150
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G+++ A +F++MP R+++SWT +++G+ + A +P + I+
Sbjct: 151 MRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAII 210
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ +H Y + F ++RVSN LID Y +CGC+ A ++F ++
Sbjct: 211 AALNACTNLGALSFGLWVHRYVLSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFYNM-- 267
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ VTF L ACSH GL
Sbjct: 268 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGL 327
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE A K+ +P + +VV+ LL ACS
Sbjct: 328 RYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGS-LLAACS 386
Query: 353 FHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG N+ + ER+ + + ++ + +YV++ N+ A G++ A ++RR M K PG
Sbjct: 387 NHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPG 446
Query: 412 RSLV 415
S +
Sbjct: 447 FSSI 450
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
VSWTS I+ +G A + F M G++PN +TF+++L+ C
Sbjct: 37 VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC 81
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/426 (31%), Positives = 217/426 (50%), Gaps = 70/426 (16%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+H L + +LFNT+ Y+ + P + + TH LR
Sbjct: 79 HAHQLFDQITQPNIVLFNTMARGYARLNDPLR----------MITHFRRCLR-------- 120
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
L+ L+ G QLH K+G ++YV L+NMY + G + S ++FD++ E
Sbjct: 121 --LVSKVKALAE---GKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDE 175
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
+V +N +I L + A +LF E+ +P+++
Sbjct: 176 PCVVAYNAIIMSLARNNRANEALALFREL---------------------QEIGLKPTDV 214
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+L VL + G++ + +H Y +K GF+ + ++V+ LID YAKCG + A+ +F D
Sbjct: 215 TMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRY-VKVNTTLIDMYAKCGSLDDAVNVFRD 273
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +++ +W++II +A HG G A+ M+K ++P+ +TFL +L ACSH GL
Sbjct: 274 MP--KRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVE 331
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAGRL++A K +P + T ++ R LL
Sbjct: 332 EGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTP-ILWRTLLS 390
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
ACS HGNVEMG+RV ++ E++ +GGDYV+ N+ A G++ D LR+ M ++ A+K
Sbjct: 391 ACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKI 450
Query: 410 PGRSLV 415
PG S +
Sbjct: 451 PGCSSI 456
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 31/230 (13%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+E+A LF+++ N+V + + GY R+N T L + + A+
Sbjct: 75 ASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITH-----FRRCLRLVSKVKALA 129
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + K G + ++ V LI+ Y CG I ++ ++F+ I + +V++ +II
Sbjct: 130 EGKQLHCFAVKLGVSD-NMYVVPTLINMYTACGDIDASRRVFDKI--DEPCVVAYNAIIM 186
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LH-----YG--- 312
A + A+ F +Q++GLKP VT L VL++C+ G +H YG
Sbjct: 187 SLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDR 246
Query: 313 ------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G L+ A + +P D ++ A + HG+
Sbjct: 247 YVKVNTTLIDMYAKCGSLDDAVNVFRDMPKR--DTQAWSAIIVAYATHGD 294
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 212/373 (56%), Gaps = 49/373 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT++ ++ +C + S LG Q+H+++ K F+SH++V ++L++MY G + ++ ++F
Sbjct: 577 NEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 636
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D LPER++V+ +I+G + G E A LD + R+ R S
Sbjct: 637 DGLPERDVVSCTAIISGYAQLGLDEEA------------------LDLFRRLQREGMRS- 677
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ +T +VL A+ A+ + + +H + R F + + N LID Y+KCG + +
Sbjct: 678 --NYVTYASVLTALSGLAALDHGRQVHSH-VLRAKLPFYVVLQNSLIDMYSKCGSLTYSR 734
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACS 305
++F+ S+ + ++SW +++ G++ HG+G+ AVE F+ M++ +KP+ VTFL+VL+ CS
Sbjct: 735 RIFD--SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 792
Query: 306 HGGL-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
HGG+ HYGC+VD+ GRAGR+E+A + +P E T
Sbjct: 793 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT-AA 851
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
+ LLGAC H NV +GE V R++LE+E N G+YV++ N+ A GR+ D +R +M
Sbjct: 852 IWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMK 911
Query: 403 ERNALKFPGRSLV 415
E+ +K PGRS +
Sbjct: 912 EKAVIKEPGRSWI 924
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 52/340 (15%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y ++ C++ + G ++HA + K ++ VY+ T L+ +Y L D+ ++ DE+P
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
ERN+V+W MI+G + G A LF EM ++ G T P+E
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEM----------LMSG-----------TAPNE 578
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T VL + + + + IH K F + I V + L+D YAK G I A ++F+
Sbjct: 579 FTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH-IFVGSSLLDMYAKAGKICEARRVFD 637
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGL 309
+ +++VS T+IISG+A G+ + A++ F R+Q+ G++ N VT+ SVL A S L
Sbjct: 638 GLP--ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 695
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
+G L+DM + G L + +I +P V+ +L
Sbjct: 696 DHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERT--VISWNAMLV 753
Query: 350 ACSFHGNVEMGERVTR--KVLEMERGNGGDYVLMYNILAG 387
S HG +G K+++ E D V +L+G
Sbjct: 754 GYSKHG---LGREAVELFKLMKEENKVKPDSVTFLAVLSG 790
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 216/429 (50%), Gaps = 65/429 (15%)
Query: 17 TTNSLLHHTLLFNTLLH-FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
TT H LFNTL+ F S A Y +++ H+ SP + FT+ F++
Sbjct: 183 TTPPPSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRR---HAVSP-----NKFTFPFVL 234
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-------KLFDE 128
+ C + LG +HA + K GF+ +V LV+MY +D S K+FDE
Sbjct: 235 KACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCC--CQDGSSGPVSAKKVFDE 292
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
P ++ VTW+ MI G + G A +LF EM TG+ P
Sbjct: 293 SPVKDSVTWSAMIGGYARAGNSARAVTLFREMQV------TGVC---------------P 331
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
EIT+++VL A GA+ + + Y E++ + + N LID +AKCG + A+K+
Sbjct: 332 DEITMVSVLSACADLGALELGKWLESYIERKNIMR-SVELCNALIDMFAKCGDVDRAVKV 390
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F ++ V + +VSWTS+I G AMHG G AV F+ M + G+ P+ V F+ VL+ACSH G
Sbjct: 391 FREMKV--RTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSG 448
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HYGC+VDML RAGR+ +A + +P E V+ R I
Sbjct: 449 LVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSI 508
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+ AC G +++GE V ++++ E + +YVL+ NI A + R+ ++R +MD +
Sbjct: 509 VT-ACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGM 567
Query: 407 LKFPGRSLV 415
K PG +++
Sbjct: 568 RKIPGSTMI 576
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 210/420 (50%), Gaps = 75/420 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
NT+L + + P+ A L+++ L D+ TY LI+ C L G
Sbjct: 87 LNTVLRIAAGSPRPRVALELHRRRLA-----------LPDTHTYPPLIQACARLLALREG 135
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LHA +K GF + V+V +LV++Y + G + + K+FDE+P R
Sbjct: 136 ECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG-------------- 181
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
RN+VSW +L+ + R N G P TI++VL
Sbjct: 182 ---------------RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVL 226
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A + GA+ + +H Y EK G + VSN LID YAKCG + A ++FE++ + R
Sbjct: 227 TACAEFGALALGRRVHVYVEKVGL-VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGR- 284
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+VSWTS+I G A +G GK A+E F M++ L P +T + VL ACSH GL
Sbjct: 285 TVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYF 344
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
H GC+VD+LGRAGR+E+A + +P E + VV R LLG+C+ H
Sbjct: 345 DRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLE-PNAVVWRTLLGSCAMHK 403
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+E+G+ +++E++ G+ GDYVL+ N+ A VG + D LR+ M + K PG SLV
Sbjct: 404 KLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLV 463
>gi|326513504|dbj|BAJ87771.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524908|dbj|BAK04390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/429 (30%), Positives = 230/429 (53%), Gaps = 50/429 (11%)
Query: 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL- 81
H +NTL+ + + SP A L+ +++ +P D+FT++F++++C
Sbjct: 82 HPAFFYNTLMRGLAASSSPGDAIGLFAAMRRA---GAAP-----DAFTFTFVLKSCSRCP 133
Query: 82 SYPNLGTQLHAVISKVG----FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
S L + LHA + G +H +V+ AL++ Y + D+ ++F+E+P R++V++
Sbjct: 134 SGRRLPSDLHAQAIRHGCLGELSAHTHVHNALLHAYACRAAVDDACRVFEEIPVRDVVSF 193
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------STEPSE 190
+ ++T +K +L AR +F++MP R+VVSWT ++ Y + R A +P E
Sbjct: 194 SGLLTAHLKANDLHAARLVFDQMPHRDVVSWTAMISAYAKACRPQEALALFDAMPMQPDE 253
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+T+++++ A G + + + + + GF + + + N L+D YAKCG + A LF+
Sbjct: 254 VTMVSIVSACTTLGDLATGERVRRHIDSLGFG-WMVSLRNALMDMYAKCGSLPEARALFD 312
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSHGG 308
++V ++L SW ++IS +A HG + F +M G +KP+ VT L++L A +H G
Sbjct: 313 GMTV--RSLASWNTLISAYASHGDLDNTIAVFYQMLAEGNTVKPDGVTLLALLIAYTHKG 370
Query: 309 L------------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
HYGC+VDMLGRAG+LE+A ++ +P ++ V+
Sbjct: 371 CVEEGRAMFNAMQRGNFGKVELTVEHYGCVVDMLGRAGKLEEAYQVIEQMPIP-SNAVIW 429
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLGAC HG+++M ER +++ + GG Y+L+ ++ A GR +A +R M+ER
Sbjct: 430 GALLGACRTHGDIDMAERAVKELRNLNPEEGGYYILLSDMYASAGRIAEATEIRHAMNER 489
Query: 405 NALKFPGRS 413
K GRS
Sbjct: 490 GVQKTTGRS 498
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 228/445 (51%), Gaps = 51/445 (11%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
++ + HLL + + L++ L+ Y+ + LY + ++ SP+
Sbjct: 58 HIPVHTYPHLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSM---LNNNVSPV--- 111
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
SFT+S L L P+LG+QLH GF + +YV +++MYV G L + K+
Sbjct: 112 --SFTFSALFSL---LKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKV 166
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT--------- 176
FDE+P R++VTW +I + G+++ A LF +P +++V+WT ++ GY+
Sbjct: 167 FDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKAL 226
Query: 177 ---RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF-NAFDIRVSNCL 232
R R G T+ EIT++ + A Q G I E F + ++ V + L
Sbjct: 227 QFFRKMREAGVVTD--EITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSAL 284
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID Y+KCG + A +F+ ++ N+ S++S+I GFA+HG ++A++ F M + G+KP
Sbjct: 285 IDMYSKCGNVEEAYNVFK--GMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKP 342
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
N VTF+ + ACSH G+ HY C+ D+LGRAG LE+A ++
Sbjct: 343 NHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQL 402
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+P E + V LLGA HGN ++ E +R + E+E N G+Y+L+ A +
Sbjct: 403 VQTMPME-PNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAK 461
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+ D R+R++M E+ K PG S V
Sbjct: 462 WDDVSRVRKLMREKQLRKNPGCSWV 486
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 185/339 (54%), Gaps = 36/339 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+V +YV+ G + + ++FD++P R+ +W+V+I G K G + AR +F+ MP +N+V+
Sbjct: 184 AMVVVYVNAGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVA 243
Query: 168 WTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
WT +++GY + A EP T++ V+ A Q G+ + Y +
Sbjct: 244 WTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVD 303
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K+ D +V L+D +AKCG + AL F +I+ + + +T++ISG A HG K
Sbjct: 304 KKRIERND-KVLTALVDMHAKCGNVDEALSAFREIA--QPDAYPYTALISGLAAHGHAKL 360
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A++ FERMQ + P+ +TF+ VL ACSH GL HY C+V
Sbjct: 361 ALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVV 420
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
DMLGRAGRLE+A ++ +P + LL AC HGNVE+ E V K+ E+E N
Sbjct: 421 DMLGRAGRLEEAFEMVQTMPMGPHPGAL-GALLSACKTHGNVEIAEIVANKLFELEPHNT 479
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
G+Y+++ NI A ++ +AER+R VM R K PG S+
Sbjct: 480 GNYIMLSNIYAEKEQWEEAERIRSVMRTRVPFKQPGSSM 518
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 39/246 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKL 125
D F+ F + +L LG LHA+ ++ + V ALV++Y L +
Sbjct: 80 DHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLPVANALVDLYAKCDDLPAAHTA 139
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
++ + V++N ++ + + A SLF MP R VSW ++ Y + A
Sbjct: 140 LADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVSSA- 198
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS---NCLIDTYAKCGCI 242
+R F+ R S + LI Y KCG +
Sbjct: 199 --------------------------------RRVFDQMPTRDSTSWSVLIVGYCKCGSM 226
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
SA ++F+ + KNLV+WT++I+G+A G+ K ++ F M+ G++P+ T + V++
Sbjct: 227 RSAREVFDRMPA--KNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVIS 284
Query: 303 ACSHGG 308
A S G
Sbjct: 285 AASQIG 290
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 221/420 (52%), Gaps = 57/420 (13%)
Query: 20 SLLHHTLLF--NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
S HH LF NT++ YS++DSP A LY+ + + SP +S+T+ F+++
Sbjct: 65 SCTHHPNLFMWNTIIRGYSISDSPITAIALYRDM---FLCGISP-----NSYTFGFVLKA 116
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C L G +LH+ I KVG + L+ +Y + G + + +FDE+PE + +W
Sbjct: 117 CCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASW 176
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
+ M++G + G+ A LF EM NV S T+ +V+
Sbjct: 177 STMVSGYAQNGQAVEALKLFREMQAENVSS---------------------DAFTLASVV 215
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
GA+ + +H Y +K G D+ + L+ Y+KCG + +ALK+F+ ++ +
Sbjct: 216 GVCGDLGALDLGKWVHSYMDKEGVK-IDVVLGTALVGMYSKCGSLDNALKVFQGMA--ER 272
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++ +W+++I+G+A+HG G+ A++ F+ M++ PN VTF SVL+ACSH GL
Sbjct: 273 DVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIF 332
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+ RAG + A K +P E +VV+ R LLGAC HG
Sbjct: 333 ETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE-PNVVLWRTLLGACKTHG 391
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++GE ++RK+L+++ + +YVL+ N+ A +GR+ ++R +M ++ K G S +
Sbjct: 392 YKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSI 451
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 39/256 (15%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G + YA +F N+ W I+ GY+ + A ++ + + P + G V
Sbjct: 55 GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVL 114
Query: 207 -------RNC--QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
R C Q +H K G + F+ + N LI YA CGC+ A +F+++
Sbjct: 115 KACCKLLRLCEGQELHSQIVKVGLD-FETPLVNGLIKLYAACGCMDYACVMFDEMP--EP 171
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG---- 312
+ SW++++SG+A +G A++ F MQ + + T SV+ C G L G
Sbjct: 172 DSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVH 231
Query: 313 ----------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
LV M + G L+ A K+ G+ DV ++ + HG+
Sbjct: 232 SYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAER--DVTAWSTMIAGYAIHGH 289
Query: 357 VEMGERVTRKVLEMER 372
GE+ + M+R
Sbjct: 290 ---GEKALQLFDAMKR 302
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 232/471 (49%), Gaps = 92/471 (19%)
Query: 1 SPSSNNVTT-----RIHSHLLTTNSLLHHTLL---------------FNTLLHFYSLADS 40
SPS ++++T +IH+H++ T+ HH L +N ++ Y+ +
Sbjct: 82 SPSQHDLSTLEQTKQIHAHIIKTH--FHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQ 139
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
P+ A +Y QL+++ D+F +++ C +S+ LG ++H + K G
Sbjct: 140 PRNALNVYAQLRKMDFE--------VDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLD 191
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV----KWGELEYARSL 156
V+V AL+ MY ++ + +FD++ ER++V+W T L+ K G L AR L
Sbjct: 192 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQL 251
Query: 157 FEEMPCRNVVSWTGILDGYTRMNRSNGASTE----------PSEITILAVLPAIWQNGAV 206
F + + VVSWT ++ G R NR + P+EIT+L
Sbjct: 252 FNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITML------------ 299
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ D ++ L+D YAKCG I +A +LF I +++ W +II
Sbjct: 300 -----------NKERVEVDCILNTALVDMYAKCGDINAAGRLF--IEAISRDICMWNAII 346
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+GFAMHG G+ A++ F M++ G+KPN +TF+ +L+ACSH GL
Sbjct: 347 TGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 406
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+VD+LGRAG L++A ++ +P + + +V L+ AC H N ++GE
Sbjct: 407 VPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIK-PNTIVWGALVAACRLHKNPQLGELAA 465
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++LE+E N G VLM NI A R+ DA +R+ M K PG S++
Sbjct: 466 TQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVI 516
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 185/340 (54%), Gaps = 36/340 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+V +YV+ G + + ++FD++P R+ +W+V+I G K G + AR +F+ MP +N+V+
Sbjct: 184 AMVVVYVNAGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVA 243
Query: 168 WTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
WT +++GY + A EP T++ V+ A Q G+ + Y +
Sbjct: 244 WTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVD 303
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K+ D +V L+D +AKCG + AL F +I+ + + +T++ISG A HG K
Sbjct: 304 KKRIERND-KVLTALVDMHAKCGNVDEALSAFREIA--QPDAYPYTALISGLAAHGHAKL 360
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A++ FERMQ + P+ +TF+ VL ACSH GL HY C+V
Sbjct: 361 ALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVV 420
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
DMLGRAGRLE+A ++ +P + LL AC HGNVE+ E V K+ E+E N
Sbjct: 421 DMLGRAGRLEEAFEMVQTMPMGPHPGAL-GALLSACKTHGNVEIAEIVANKLFELEPHNT 479
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G+Y+++ NI A ++ +AER+R VM R K PG S V
Sbjct: 480 GNYIMLSNIYAEKEQWEEAERIRSVMRTRLPFKQPGSSWV 519
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 39/246 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKL 125
D F+ F + +L LG LHA+ ++ + V ALV++Y L +
Sbjct: 80 DHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAAHTA 139
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
++ + V++N ++ + + A SLF MP R VSW ++ Y + A
Sbjct: 140 LADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSA- 198
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS---NCLIDTYAKCGCI 242
+R F+ R S + LI Y KCG +
Sbjct: 199 --------------------------------RRVFDQMPTRDSTSWSVLIVGYCKCGSM 226
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
SA ++F+ + KNLV+WT++I+G+A G+ K ++ F M+ G++P+ T + V++
Sbjct: 227 RSAREVFDRMPA--KNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVIS 284
Query: 303 ACSHGG 308
A S G
Sbjct: 285 AASQIG 290
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 205/380 (53%), Gaps = 36/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S T ++ C + +L ++H +S+ + + + ALVN Y + G + + ++F
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---MNRS--- 181
+ R++++W ++ G V+ G L+ AR+ F++MP R+ +SWT ++DGY R N S
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 182 ----NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
A P E T+++VL A G++ + I Y +K D+ V N LID Y
Sbjct: 356 FREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNALIDMYF 414
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCGC A K+F D+ ++++ +WT+++ G A +G G+ A++ F +MQ + ++P+ +T+
Sbjct: 415 KCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITY 472
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
L VL+AC+H G+ HYGC+VDMLGRAG +++A +I +P
Sbjct: 473 LGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMP 532
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ +V LLGA H + M E +K+LE+E NG Y L+ NI AG R+ D
Sbjct: 533 MN-PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLR 591
Query: 396 RLRRVMDERNALKFPGRSLV 415
+RR + + K PG SL+
Sbjct: 592 EVRRKIVDVAIKKTPGFSLI 611
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 138/318 (43%), Gaps = 79/318 (24%)
Query: 67 DSFTYSFLI----RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
DS T+ FL+ R L+ G +LH + K G S++YV ALV MY G + +
Sbjct: 133 DSHTFPFLLNGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+FD + ++ +WN+MI+G + E E + L EM RN+VS
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME-RNLVS--------------- 233
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P+ +T+L VL A + C+ +H Y + +R+ N L++ YA CG +
Sbjct: 234 -----PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGEM 287
Query: 243 FSALKLFEDIS--------------VERKNL---------------VSWTSIISGFAMHG 273
A+++F + VER NL +SWT +I G+ G
Sbjct: 288 DIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------------------- 312
++E F MQ G+ P+ T +SVL AC+H G L G
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 313 CLVDMLGRAGRLEQAEKI 330
L+DM + G E+A+K+
Sbjct: 408 ALIDMYFKCGCSEKAQKV 425
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G + YA LF ++P +VV W ++ G+++++ P T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 198 PAIWQNGAVRNC-QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
+ ++G C + +H + K G + ++ V N L+ Y+ CG + A +F+ +
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMARGVFDRRC--K 198
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+++ SW +ISG+ + ++E M++ + P VT L VL+ACS
Sbjct: 199 EDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 214/404 (52%), Gaps = 56/404 (13%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQS-HVYVNTALVNMYVSLGFLKDS 122
L +++FL+ + S+ HA++ K G F S ++ +ALV+ Y L ++
Sbjct: 84 LLTPLSFTFLLSSPAAASHAPFALCSHALLVKSGHFASGDPFLGSALVSFYAKSRLLDEA 143
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS- 181
++FDE+P R+ +N +++ + G ++ A LF EM RNVVSWT ++ GY + R
Sbjct: 144 RRVFDEMPRRDTAVYNALLSAYARCGLVDAAEKLFGEMTERNVVSWTAMVSGYAQNGRHE 203
Query: 182 ----------NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
GA +P+E+T+ +VLPA GA+ + Y +G + ++ V+N
Sbjct: 204 AAVETFLEMWEGAGVQPNELTVSSVLPACAAVGAMELGTKVEEYARGKG-HLGNVFVTNA 262
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ----- 286
L++ YAKCG I A ++F+ I R++L SW ++I FA+HG+ A+ F +++
Sbjct: 263 LLEMYAKCGSIQRAWQVFQGIG-HRRDLCSWNTMIMAFAVHGLWMEALALFHKLRVRISC 321
Query: 287 -------------KVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
G+KP+ +TF+ V+ AC+HGGL HY
Sbjct: 322 SNSLVYFFSIPTHMTGVKPDGITFVGVILACTHGGLVDEGKLIFNSMEADFSINPRIEHY 381
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VD+LGRAG L++A + + +P+E D V+ LLGACSFHGN+E+ E K++ +E
Sbjct: 382 GCMVDLLGRAGLLKEAYSMIISMPAE-PDAVIWGALLGACSFHGNIELAETAVDKLMYLE 440
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N + V++ NI A G++ ++ +++ E++ K G S +
Sbjct: 441 PQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 484
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 205/380 (53%), Gaps = 36/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S T ++ C + +L ++H +S+ + + + ALVN Y + G + + ++F
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---MNRS--- 181
+ R++++W ++ G V+ G L+ AR+ F++MP R+ +SWT ++DGY R N S
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 182 ----NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
A P E T+++VL A G++ + I Y +K D+ V N LID Y
Sbjct: 356 FREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNALIDMYF 414
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCGC A K+F D+ ++++ +WT+++ G A +G G+ A++ F +MQ + ++P+ +T+
Sbjct: 415 KCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITY 472
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
L VL+AC+H G+ HYGC+VDMLGRAG +++A +I +P
Sbjct: 473 LGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMP 532
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ +V LLGA H + M E +K+LE+E NG Y L+ NI AG R+ D
Sbjct: 533 MN-PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLR 591
Query: 396 RLRRVMDERNALKFPGRSLV 415
+RR + + K PG SL+
Sbjct: 592 EVRRKIVDVAIKKTPGFSLI 611
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 138/318 (43%), Gaps = 79/318 (24%)
Query: 67 DSFTYSFLI----RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
DS T+ FL+ R L+ G +LH + K G S++YV ALV MY G + +
Sbjct: 133 DSHTFPFLLNGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+FD + ++ +WN+MI+G + E E + L EM RN+VS
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME-RNLVS--------------- 233
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P+ +T+L VL A + C+ +H Y + +R+ N L++ YA CG +
Sbjct: 234 -----PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGEM 287
Query: 243 FSALKLFEDIS--------------VERKNL---------------VSWTSIISGFAMHG 273
A+++F + VER NL +SWT +I G+ G
Sbjct: 288 DIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------------------- 312
++E F MQ G+ P+ T +SVL AC+H G L G
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 313 CLVDMLGRAGRLEQAEKI 330
L+DM + G E+A+K+
Sbjct: 408 ALIDMYFKCGCSEKAQKV 425
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G + YA LF ++P +VV W ++ G+++++ P T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 198 PAIWQNGAVRNC-QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
+ ++G C + +H + K G + ++ V N L+ Y+ CG + A +F+ +
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMARGVFDRRC--K 198
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+++ SW +ISG+ + ++E M++ + P VT L VL+ACS
Sbjct: 199 EDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 202/384 (52%), Gaps = 39/384 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T ++++ ++ +LG +HA K+G + +V +L+ MY S ++ + ++F
Sbjct: 104 DTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVF 163
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+PE + V+W VMI G G+++ AR LF+ ++ W ++ GY + N
Sbjct: 164 DEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLH 223
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP E I+ +L A GA+ IH Y + G +RVS LID Y
Sbjct: 224 MFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGL-PLTLRVSTGLIDMY 282
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A LF ++S +R N V W ++ISG AM G G+ A++ F M+K G+KP+ +T
Sbjct: 283 AKCGHLDLAKYLFNEMS-QRDN-VCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNIT 340
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F++V ACS+ G+ HYGC++D+L R GR E+AE + +
Sbjct: 341 FIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRL 400
Query: 335 P---SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
P S + V R L AC HG + E ++ ++ER +G YVL+ N+ A +G++
Sbjct: 401 PKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGA-YVLLSNMYAALGKH 459
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
DA+R+R +M + K PG S +
Sbjct: 460 EDAKRVRNMMKLKGVEKVPGCSSI 483
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 54/339 (15%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL--GFLKDSSKLFDELP 130
L+ C+ + N Q HA + K G + +V + L+N G L + KLF +
Sbjct: 10 LLLHKCINM---NQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQ 66
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV-----SWTGILDGYTRM-NRSNGA 184
+ +N MI L+ GE A ++F + RN + + +L RM N G
Sbjct: 67 HPTICIFNTMIKALLLRGEFLNAIAVFSAI-FRNGIHPDTYTLPYVLKASARMTNIHLGE 125
Query: 185 STEPSEITILAVLPAIWQNGA---------VRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
S I + + + N +R+ + + + E +A V +I
Sbjct: 126 SIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQV--FDEMPELSAVSWTV---MIYG 180
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
YA G + +A +LF+ +V+ + W ++ISG+ + K + F MQ ++P+
Sbjct: 181 YANMGDVDTARELFDMATVKDTGI--WGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEA 238
Query: 296 TFLSVLNACSH-GGLHYGC--------------------LVDMLGRAGRLEQAEKIALGI 334
+++L+AC+H G L G L+DM + G L+ A+ + +
Sbjct: 239 IIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEM 298
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
D V ++ + G+ GE + +EME+
Sbjct: 299 SQR--DNVCWNAMISGMAMDGD---GEGAIKLFMEMEKA 332
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 226/451 (50%), Gaps = 73/451 (16%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYS----LADS-------PKKAFLLYKQLQQIYTHSH 59
+H+HL+ ++ L +H +L N +++ Y+ L D+ P K + + L ++ ++
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168
Query: 60 SPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
P L + FT S L++ + + GTQLHA K G+QS VYV +
Sbjct: 169 RPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
ALV+MY G + + FD +P ++ V+WN +I+G + GE E+A L +M +N
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNF-- 286
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN--AFD 225
+P+ T +VL A GA+ + +H + K G AF
Sbjct: 287 -------------------QPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAF- 326
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ N L+D YAK G I A ++F+ + + ++VSW ++++G A HG+GK ++ FE+M
Sbjct: 327 --IGNTLLDMYAKAGSIDDAKRVFDRLV--KPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRL 324
++G++PN ++FL VL ACSH GL HY VD+LGR G L
Sbjct: 383 LRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLL 442
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
++AE+ +P E T V LLGAC H N+E+G + E++ + G +L+ NI
Sbjct: 443 DRAERFIREMPIEPT-AAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNI 501
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A GR+ D ++R++M E K P S V
Sbjct: 502 YASAGRWRDVAKVRKMMKESGVKKQPACSWV 532
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 28/192 (14%)
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
G V +++H + F + + N +++ YAKCGC+ A ++F+++ K++V+WT
Sbjct: 101 GKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPT--KDMVTWT 158
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA--CSHG-----GLHYGC--- 313
++I+GF+ + + A+ F +M ++G +PN T S+L A HG LH C
Sbjct: 159 ALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKY 218
Query: 314 -----------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
LVDM R G ++ A+ G+P++ ++V ++ G H GE
Sbjct: 219 GYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTK-SEVSWNALISG----HARKGEGEH 273
Query: 363 VTRKVLEMERGN 374
+ +M+R N
Sbjct: 274 ALHLLWKMQRKN 285
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 206/388 (53%), Gaps = 49/388 (12%)
Query: 53 QIYTHS-HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111
Q + H SP P D FT++ +++ C L++ G ++HA+++K GF+S+++V +L++
Sbjct: 76 QFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLID 135
Query: 112 MYVSLGFLKDSSKLFDEL--PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
MY G+L + LFDE+ +RN+V WN MI G + + A +F M +
Sbjct: 136 MYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQ-----QFG 190
Query: 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
G++ P+++T+++VLPA GA+ + I G+ +R A + +
Sbjct: 191 GVV---------------PNDVTLVSVLPACAHLGALDLGKWIDGFISRREM-ALGLFLG 234
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N L D YAKCGCI A ++F +E ++++SW+ II G AM+G A F M G
Sbjct: 235 NALADMYAKCGCITEARRVFN--KMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCG 292
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
KPN V F+ +L AC+H GL HYGC+VD+L RAG L++A
Sbjct: 293 EKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKA 352
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
E + +P + +V++ LLG C + + G+RV + +LE++ + G YV + N+ +
Sbjct: 353 EDMISSMPMK-PNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSS 411
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
+GR DA + R M E LK PG S +
Sbjct: 412 MGRLDDAAKCRLRMRENGVLKTPGCSWI 439
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 234/486 (48%), Gaps = 107/486 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ L N+++ Y +F LY+ L++ + P D+FT++ L ++C
Sbjct: 42 SFLSNSMIKAYLETRQYPDSFALYRDLRK-----ETCFAP--DNFTFTTLTKSCSLSMCV 94
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW------- 137
G QLH+ I + GF + +YV+T +V+MY G + + FDE+P R+ V+W
Sbjct: 95 YQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGY 154
Query: 138 -------------------------NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
N M+ G VK G++ AR LF+EM + V++WT ++
Sbjct: 155 IRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMI 214
Query: 173 DGYTRMNRSNGA------------------------------------------STEPSE 190
GY + + A S +P +
Sbjct: 215 HGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDD 274
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+TIL+VLPAI GA+ + H + +++ + ++V ++D Y+KCG I A ++F+
Sbjct: 275 VTILSVLPAISDTGALSLGEWCHCFVQRKKLDK-KVKVCTAILDMYSKCGEIEKAKRIFD 333
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ K + SW ++I G+A++G +AA++ F M + KP+ +T L+V+ AC+HGGL
Sbjct: 334 EMP--EKQVASWNAMIHGYALNGNARAALDLFVTMM-IEEKPDEITMLAVITACNHGGLV 390
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAG L++AE + +P E +++ L
Sbjct: 391 EEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSS-FLS 449
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC + ++E ER+ +K +E+E N G+YVL+ N+ A R+ D ++ VM + A K
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKE 509
Query: 410 PGRSLV 415
G SL+
Sbjct: 510 VGCSLI 515
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 199/366 (54%), Gaps = 42/366 (11%)
Query: 86 LGTQLHAVISKVGFQSH--VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+G +HA + + H V TAL++MY G L + +LF+ L ++ +V+W MI G
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSNGASTEPSEI 191
++ LE AR+LF+ R+V+ WT +L Y + N R++G P+++
Sbjct: 303 CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG--VRPTKV 360
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
TI+++L GA+ + +H Y +K D ++ L+D YAKCG I +A +LF
Sbjct: 361 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEV-DCILNTALVDMYAKCGDINAAGRLF-- 417
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
I +++ W +II+GFAMHG G+ A++ F M++ G+KPN +TF+ +L+ACSH GL
Sbjct: 418 IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVT 477
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAG L++A ++ +P + + +V L+
Sbjct: 478 EGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIK-PNTIVWGALVA 536
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC H N ++GE ++LE+E N G VLM NI A R+ DA +R+ M K
Sbjct: 537 ACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKE 596
Query: 410 PGRSLV 415
PG S++
Sbjct: 597 PGHSVI 602
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/443 (22%), Positives = 186/443 (41%), Gaps = 107/443 (24%)
Query: 1 SPSSNNVTT-----RIHSHLLTTNSLLHHTLL---------------FNTLLHFYSLADS 40
SPS ++++T +IH+H++ T+ HH L +N ++ Y+ +
Sbjct: 47 SPSQHDLSTLEQTKQIHAHIIKTH--FHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQ 104
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
P+ A +Y QL+++ D+F +++ C +S+ LG ++H + K G
Sbjct: 105 PRNALNVYAQLRKMDFE--------VDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLD 156
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
V+V AL+ MY ++ + +FD++ ER++V+W+ MI L + E + A L EM
Sbjct: 157 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM 216
Query: 161 PCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
N PSE+ +++++ +R + +H Y +
Sbjct: 217 ---------------------NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNS 255
Query: 221 FNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDI--------------------------- 252
N + + L+D YAKCG + A +LF +
Sbjct: 256 NNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARAL 315
Query: 253 --SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGGL 309
S + ++++ WT+++S +A A F++M+ G++P +VT +S+L+ C+ G L
Sbjct: 316 FDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGAL 375
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
G LVDM + G + A ++ + S D+ + ++
Sbjct: 376 DLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISR--DICMWNAIIT 433
Query: 350 ACSFHGNVEMGERVTRKVLEMER 372
+ HG GE EMER
Sbjct: 434 GFAMHG---YGEEALDIFAEMER 453
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 40/252 (15%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+++ +L Y+ A+ +AF L+ Q++ S +RP T L+ C +
Sbjct: 325 MIWTAMLSAYAQANCIDQAFNLFDQMRT------SGVRP--TKVTIVSLLSLCAVAGALD 376
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +H+ I K + +NTALV+MY G + + +LF E R++ WN +ITG
Sbjct: 377 LGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFA 436
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G E A +F EM + V +P++IT + +L A G
Sbjct: 437 MHGYGEEALDIFAEMERQGV---------------------KPNDITFIGLLHACSHAGL 475
Query: 206 VRNC-----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
V +++H +G + C++D + G + A ++ + + + + N +
Sbjct: 476 VTEGKKLFEKMVHTFGLVPQIEHY-----GCMVDLLGRAGLLDEAHEMIKSMPI-KPNTI 529
Query: 261 SWTSIISGFAMH 272
W ++++ +H
Sbjct: 530 VWGALVAACRLH 541
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 200/374 (53%), Gaps = 36/374 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ ++ C + G +H I GF+ ++ T+LVNMY + G + + +++
Sbjct: 216 DAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVY 275
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
D+LP +++V M++G K G ++ AR +F+ M +++V W+ ++ GY
Sbjct: 276 DQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQ 335
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
N P +IT+L+V+ A GA+ + IH Y +K GF + ++N LID Y
Sbjct: 336 LFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGR-TLPINNALIDMY 394
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A ++FE++ RKN++SW+S+I+ FAMHG +A+ F RM++ ++PN VT
Sbjct: 395 AKCGNLVKAREVFENMP--RKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVT 452
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL ACSH GL HYGC+VD+ RA L +A ++ +
Sbjct: 453 FIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETM 512
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P +V++ L+ AC HG +E+GE ++LE+E + G V++ NI A R+ D
Sbjct: 513 PFP-PNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDV 571
Query: 395 ERLRRVMDERNALK 408
+R++M + K
Sbjct: 572 GLVRKLMKHKGVSK 585
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 186/409 (45%), Gaps = 88/409 (21%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
SPS+ + + SH+ T N LL +S +P+ LY L++ +
Sbjct: 61 SPSALDYALSLFSHIPNPP-----TRFSNQLLRQFSRGPTPENTLSLYLHLRR----NGF 111
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFL 119
PL D F++ L++ LS NLG ++H + SK GF + ++ +AL+ MY + G +
Sbjct: 112 PL----DRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRI 167
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
D+ LFD++ R++VTWN+MI G + ++ L+EEM
Sbjct: 168 MDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEM------------------- 208
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+++G TEP I + VL A G + + IH + + GF + L++ YA C
Sbjct: 209 KTSG--TEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGS-HIQTSLVNMYANC 265
Query: 240 GCIFSALKLFEDISVE-----------------------------RKNLVSWTSIISGFA 270
G + A ++++ + + K+LV W+++ISG+A
Sbjct: 266 GAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYA 325
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LH-------YG---- 312
A++ F MQ+ + P+++T LSV++AC++ G +H +G
Sbjct: 326 ESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLP 385
Query: 313 ---CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
L+DM + G L +A ++ +P + +V+ ++ A + HG+ +
Sbjct: 386 INNALIDMYAKCGNLVKAREVFENMPRK--NVISWSSMINAFAMHGDAD 432
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 43/291 (14%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSNGASTEPSEITILAVL 197
L+YA SLF +P +L ++R R NG + + +L
Sbjct: 65 LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLD--RFSFPPLL 122
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A+ + A+ IHG K GF D + + LI YA CG I A LF+ +S +
Sbjct: 123 KAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMS--HR 180
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-LHYG---- 312
++V+W +I G++ + ++ +E M+ G +P+ + +VL+AC+H G L YG
Sbjct: 181 DVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIH 240
Query: 313 ----------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
LV+M G + A ++ +PS+ +VV +L + G
Sbjct: 241 QFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSK--HMVVSTAMLSGYAKLGM 298
Query: 357 VE----MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
V+ + +R+ K L Y Y L + + + +R R V D+
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQ 349
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 209/393 (53%), Gaps = 50/393 (12%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
R D + L C L G Q H V K+GF + V V AL++MY GF+ +
Sbjct: 106 RVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEV 165
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
++F L E+++V+W V++ LVKW L+ R +F+EMP RNVV+WT ++ GY
Sbjct: 166 KRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYL----GA 221
Query: 183 GASTEPSE---------------ITILAVLPAIWQNGAVRNCQLIHGYGEKRGF-----N 222
G + E E +T+ ++L A Q+G + + +H Y K+
Sbjct: 222 GFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEE 281
Query: 223 AFD-IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
+D + V L+D YAKCG I S++K+F + ++N+V+W ++ SG AMHG G+ ++
Sbjct: 282 TYDGVMVGTALVDMYAKCGNIDSSIKVFR--LMRKRNVVTWNALFSGLAMHGKGRMVIDM 339
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGR 320
F M + +KP+ +TF ++L+ACSH G+ HY C+VD+LGR
Sbjct: 340 FPEMVR-EVKPDDLTFTALLSACSHLGMVDEGWRCFHSLQFYGLEPKVDHYACMVDILGR 398
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AGR+E+AE + +P +VV+ LLG+CS HG +E+ ER+ R++++M G+ +L
Sbjct: 399 AGRIEEAEILMREMPVPPNEVVLGS-LLGSCSVHGKLEIAERIKRELIQMSPGHTEYQIL 457
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
M N+ GR A+ LR + R K PG S
Sbjct: 458 MSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLS 490
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 56/270 (20%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQS--HVYVNTALVNMYVSLGFLKDSSKLFDELP 130
L+R S+ + G +LHAV++ G + Y++ AL Y S G + + KLFDE+P
Sbjct: 11 LLLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIP 70
Query: 131 --ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+++ V W +++ ++G L + LF EM + V E
Sbjct: 71 LSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRV---------------------EI 109
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
++++ + + +R + HG K GF ++V N L+D Y KCG + ++
Sbjct: 110 DHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLT-SVKVCNALMDMYGKCGFVSEVKRI 168
Query: 249 FEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKAAV 279
F+ + + +N+V+WT +++G+ G + +
Sbjct: 169 FQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVL 228
Query: 280 ENFERMQ-KVGLKPNRVTFLSVLNACSHGG 308
E M + G N VT S+L+AC+ G
Sbjct: 229 ELLAEMVFRCGHGLNFVTLCSMLSACAQSG 258
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 21/124 (16%)
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+SN L YA G I +A KLF++I + K+ V WT+++S F+ G+ +++ F M++
Sbjct: 45 LSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRR 104
Query: 288 VGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQ 326
++ + V+ + + C+ L +G L+DM G+ G + +
Sbjct: 105 KRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSE 164
Query: 327 AEKI 330
++I
Sbjct: 165 VKRI 168
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/408 (32%), Positives = 212/408 (51%), Gaps = 55/408 (13%)
Query: 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQ 89
T++ Y+ D P +A L+++++ + ++P + T ++ C Q
Sbjct: 208 TMIGAYAQWDLPHEAIKLFRRMEI------ASVKP--NEITLVNVLTACARSRDLETAKQ 259
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
+H I + G H + +AL+++Y G + LF+++PE+NL WN+MI G V+ +
Sbjct: 260 VHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSD 319
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
E A SLF EM V + ++T+ ++L A GA+
Sbjct: 320 YEEALSLFNEMQLSGV---------------------KGDKVTMASLLIACTHLGALELG 358
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+ +H Y EK D+ + L+D YAKCG I SA+++F+++ K++++WT++I G
Sbjct: 359 KWLHVYIEKEKIEV-DVALGTALVDMYAKCGSIESAMRVFQEMP--EKDVMTWTALIVGL 415
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
AM G G A+E F MQ +KP+ +TF+ VL ACSH GL
Sbjct: 416 AMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPS 475
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VDMLGRAGR+ +AE + +P D V LL AC HGN+ + ER +++
Sbjct: 476 IEHYGCMVDMLGRAGRIAEAEDLIQNMPMA-PDYFVLVGLLSACRIHGNLVVAERAAQQL 534
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+E++ NGG YVL+ NI + + + A+++R +M ERN K PG S +
Sbjct: 535 IELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAI 582
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 153/334 (45%), Gaps = 56/334 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T N+++ Y+ + P++A L Y QL + L P D FT+ L ++C L
Sbjct: 105 TFTCNSIIRGYTNKNLPRQAILFY-QLMMLQG-----LDP--DRFTFPSLFKSCGVLCE- 155
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G QLH +K+GF S Y+ L+NMY + G L + K+FD++ +++V+W MI
Sbjct: 156 --GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 213
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+W A LF M AS +P+EIT++ VL A ++
Sbjct: 214 AQWDLPHEAIKLFRRM---------------------EIASVKPNEITLVNVLTACARSR 252
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + +H Y ++ G F +++ L+D Y KCGC A LF + KNL W
Sbjct: 253 DLETAKQVHKYIDETGI-GFHTVLTSALMDVYCKCGCYPLARDLFNKMP--EKNLFCWNI 309
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG----------- 312
+I+G + A+ F MQ G+K ++VT S+L AC+H G L G
Sbjct: 310 MINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEK 369
Query: 313 ---------CLVDMLGRAGRLEQAEKIALGIPSE 337
LVDM + G +E A ++ +P +
Sbjct: 370 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK 403
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 18/178 (10%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
V L G L YAR +F ++P + I+ GYT N A +P
Sbjct: 79 VAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDP 138
Query: 189 SEITILAVLPAIWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
T P+++++ G + + +H + K GF A D + N L++ Y+ CGC+ SA K
Sbjct: 139 DRFT----FPSLFKSCGVLCEGKQLHCHSTKLGF-ASDAYIQNTLMNMYSNCGCLVSARK 193
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+F+ + K++VSW ++I +A + A++ F RM+ +KPN +T ++VL AC+
Sbjct: 194 VFDKMV--NKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACA 249
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 234/486 (48%), Gaps = 107/486 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ L N+++ Y +F LY+ L++ + P D+FT++ L ++C
Sbjct: 42 SFLSNSMIKAYLETRQYPDSFALYRDLRK-----ETCFAP--DNFTFTTLTKSCSLSMCV 94
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW------- 137
G QLH+ I + GF + +YV+T +V+MY G + + FDE+P R+ V+W
Sbjct: 95 YQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGY 154
Query: 138 -------------------------NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
N M+ G VK G++ AR LF+EM + V++WT ++
Sbjct: 155 IRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMI 214
Query: 173 DGYTRMNRSNGA------------------------------------------STEPSE 190
GY + + A S +P +
Sbjct: 215 HGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDD 274
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+TIL+VLPAI GA+ + H + +++ + ++V ++D Y+KCG I A ++F+
Sbjct: 275 VTILSVLPAISDTGALSLGEWCHCFVQRKKLDK-KVKVCTAILDMYSKCGEIEKAKRIFD 333
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ K + SW ++I G+A++G +AA++ F M + KP+ +T L+V+ AC+HGGL
Sbjct: 334 EMP--EKQVASWNAMIHGYALNGNARAALDLFVTMM-IEEKPDEITMLAVITACNHGGLV 390
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAG L++AE + +P E +++ L
Sbjct: 391 EEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSS-FLS 449
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC + ++E ER+ +K +E+E N G+YVL+ N+ A R+ D ++ VM + A K
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKE 509
Query: 410 PGRSLV 415
G SL+
Sbjct: 510 VGCSLI 515
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 198/359 (55%), Gaps = 42/359 (11%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVS--LGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
H K G SH YV +++ Y +G L + KLFDE+P ++ VT + MIT
Sbjct: 1 HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY---- 56
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAVLP 198
E A +FE MP +++V+W +++G+ + N A T EP T++++L
Sbjct: 57 -FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLS 115
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A + + + H Y K G N ++ +N L+D YAKCG I A K+F+++ +ER N
Sbjct: 116 ACAELATLVLGRRAHVYMVKVGLNK-NLHANNALLDLYAKCGTISEARKIFDEMGIER-N 173
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+VSWTS+I G A++G GK A+E+F+ M++ GL P+ +TF+ VL ACSH G+
Sbjct: 174 VVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFK 233
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+LGRAG L++A +P + + V+ R LLGAC+ HG+
Sbjct: 234 RMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQ-PNAVIWRTLLGACTIHGH 292
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +G ++L++E + GDYVL+ N+ A R+ D +RR M K PG SLV
Sbjct: 293 LGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLV 351
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 45/273 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N++++ ++L P +A LYK++ + P D FT L+ C L+ LG
Sbjct: 75 WNSVINGFALNGKPNEALTLYKRM------GSEGVEP--DGFTMVSLLSACAELATLVLG 126
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVK 146
+ H + KVG +++ N AL+++Y G + ++ K+FDE+ ERN+V+W +I GL
Sbjct: 127 RRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAV 186
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G + A F++M +V PSEIT + VL A G V
Sbjct: 187 NGFGKEALEHFKDMEREGLV---------------------PSEITFVGVLYACSHCGIV 225
Query: 207 RNCQLIHGYGE-KRGFNAFDI--RVSN--CLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
G+ KR +DI R+ + C++D + G + A +D+ ++ N V
Sbjct: 226 NE-----GFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQ-PNAVI 279
Query: 262 WTSIISGFAMHG-MGKAAVENFERMQKVGLKPN 293
W +++ +HG +G A F R + + L+P
Sbjct: 280 WRTLLGACTIHGHLGLGA---FARARLLQLEPK 309
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 46/370 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+S T++ ++ C + LG +H +I K G +S ++V+ ALV+M+V+ G L + LF
Sbjct: 513 NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+++P+R+LV+WN +I G V+ G +N V++ Y +M + +G
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHG--------------KNQVAFD-----YFKMMQESG--I 611
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P +IT +L A A+ + +H + F+ D+ V LI Y KCG I A
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDC-DVLVGTGLISMYTKCGSIEDAH 670
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++F + +KN+ SWTS+I+G+A HG GK A+E F +MQ+ G+KP+ +TF+ L+AC+H
Sbjct: 671 QVFHKLP--KKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAH 728
Query: 307 GGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+VD+ GRAG L +A + + + E D V
Sbjct: 729 AGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVE-PDSRVWG 787
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LLGAC H NVE+ E+ +K LE++ + G +V++ NI A G + + ++R+VM +R
Sbjct: 788 ALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRG 847
Query: 406 ALKFPGRSLV 415
+K PG+S +
Sbjct: 848 VVKKPGQSWI 857
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 152/278 (54%), Gaps = 32/278 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL Y ++AF L++Q+ Q ++P D T+ ++ C + G
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQ------DSVKP--DKRTFVSMLNACADARNVDKG 230
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+L+ +I K G+ + ++V TAL+NM++ G + D++K+FD LP R+LVTW MITGL +
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A +LF+ M V +P ++ +++L A A+
Sbjct: 291 GRFKQACNLFQRMEEEGV---------------------QPDKVAFVSLLRACNHPEALE 329
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H ++ G++ +I V ++ Y KCG + AL++F+ V+ +N+VSWT++I+
Sbjct: 330 QGKKVHARMKEVGWDT-EIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIA 386
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
GFA HG A F +M + G++PNRVTF+S+L ACS
Sbjct: 387 GFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 137/263 (52%), Gaps = 32/263 (12%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+AFL + ++ + S + P + T+ ++ C + S G Q+ I + G+ S
Sbjct: 396 EAFLFFNKMIE------SGIEP--NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V TAL++MY G LKD+ ++F+++ ++N+V WN MIT V+ + + A + F+ +
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
+ +P+ T ++L + ++ + +H K G
Sbjct: 508 EGI---------------------KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ D+ VSN L+ + CG + SA LF D+ +++LVSW +II+GF HG + A + F
Sbjct: 547 S-DLHVSNALVSMFVNCGDLMSAKNLFNDMP--KRDLVSWNTIIAGFVQHGKNQVAFDYF 603
Query: 283 ERMQKVGLKPNRVTFLSVLNACS 305
+ MQ+ G+KP+++TF +LNAC+
Sbjct: 604 KMMQESGIKPDKITFTGLLNACA 626
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 24/237 (10%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
TYS L++ C+ G +++ I K G Q +++ L+NMY G + ++FD++
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
E+++ +WN+++ G V+ G E A L E+M + D S +P
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQM----------VQD-----------SVKPD 210
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ T +++L A V + ++ K G++ D+ V LI+ + KCG I A K+F
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDT-DLFVGTALINMHIKCGDIGDATKVF 269
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+++ ++LV+WTS+I+G A HG K A F+RM++ G++P++V F+S+L AC+H
Sbjct: 270 DNLPT--RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 205/389 (52%), Gaps = 49/389 (12%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P SFT + + C + +G +H++ K G Q + YV L++MY G ++D S
Sbjct: 553 PSDSSFTSA--LSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGS 610
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+F + ++ V+WN +I+GL + L+ AR +FE+MP R+VVSWT I+ Y +
Sbjct: 611 HVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEV 670
Query: 184 A----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
A +P+++T+ ++L A GA++ + H K GF+ F + V N LI
Sbjct: 671 ALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTF-LFVGNSLI 729
Query: 234 DTYAKCG-----CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
Y KCG C+F + +L++W +++ G A +G+GK A++ FE+M+
Sbjct: 730 TMYFKCGYEDGFCVFEEMP--------EHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVE 781
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
G+ P++++FL VL ACSH GL HY C+VD+LGRAG L +
Sbjct: 782 GILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSE 841
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
AE + +P + D V+ LLGAC H NVE+G+RV ++ +M + YVL+ N+ A
Sbjct: 842 AEALIENMPVK-PDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFA 900
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
G + +R++M ++ K PG S +
Sbjct: 901 SQGMWDKVAEIRKLMKDQGLTKEPGISWI 929
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 44/250 (17%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
+ V TA++ Y +G ++ + +FDE+ N+V WN +I G + G L+ A+ LF++
Sbjct: 455 EQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQK 514
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNC 209
MP +N SW ++ G+ + S A + PS+ + + L A G V
Sbjct: 515 MPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIG 574
Query: 210 QLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------------ 255
++IH K G FN++ V N LI YAKCG + +F I V+
Sbjct: 575 RVIHSLAIKTGCQFNSY---VMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGL 631
Query: 256 -----------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
++++VSWT+IIS + G G+ A++ F M G+KPN++T
Sbjct: 632 SENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVT 691
Query: 299 SVLNACSHGG 308
S+L+AC + G
Sbjct: 692 SLLSACGNLG 701
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+++ YV G LK++ KLFDE+PE+N+ +WN ++TG + AR LF++MP RN VS
Sbjct: 269 AMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVS 328
Query: 168 WTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
W ++ GY ++ A P + + VL AI + +
Sbjct: 329 WMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAI 388
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K G+ D+ V + +++ Y + G + A+ FE ++ +N SWT++I+ FA G
Sbjct: 389 KTGYEG-DVVVGSAILNAYTRNGSLDLAMHFFE--TMPERNEYSWTTMIAAFAQCGRLDD 445
Query: 278 AVENFERM--QKVGLKPNRVT 296
A++ +ER+ Q V K +T
Sbjct: 446 AIQLYERVPEQTVATKTAMMT 466
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 29/316 (9%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
Q+H++ + LG ++++ ++F+E+ +R++V+WN MI G + G+++ AR LF+
Sbjct: 168 QTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDA 227
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIH 213
+N+ +WT +L GY + R A TE + ++ A++ QNG ++N + +
Sbjct: 228 FVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLF 287
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
++ ++ N ++ Y C + A +LF+ + +N VSW +ISG+
Sbjct: 288 DEMPEKNVASW-----NSVVTGYCHCYRMSEARELFDQMP--ERNSVSWMVMISGYVHIS 340
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333
A + F +M + +P++ F+ VL+A + GL D L G L IA+
Sbjct: 341 DYWEAWDVFVKMCRTVARPDQSIFVVVLSAIT--GL------DDLELIGSL---RPIAIK 389
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
E DVVV +L A + +G++++ M N + M A GR D
Sbjct: 390 TGYE-GDVVVGSAILNAYTRNGSLDLAMHFFET---MPERNEYSWTTMIAAFAQCGRLDD 445
Query: 394 AERL-RRVMDERNALK 408
A +L RV ++ A K
Sbjct: 446 AIQLYERVPEQTVATK 461
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 32/219 (14%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
L + K G++ V V +A++N Y G L + F+ +PERN +W MI + G
Sbjct: 383 LRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGR 442
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
L+ A L+E +P + V + T ++ Y ++ R A EI V+ W
Sbjct: 443 LDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVA--W-------- 492
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
N +I Y + G + A LF+ + V KN SW ++I+GF
Sbjct: 493 --------------------NAIIAGYTQNGMLKEAKDLFQKMPV--KNSASWAAMIAGF 530
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
+ + A+E + + G P+ +F S L+AC++ G
Sbjct: 531 VQNEESREALELLIELHRSGSVPSDSSFTSALSACANIG 569
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 38/161 (23%)
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
E P+ +L N I L + G +E AR +F EM R+VVSW +++GY+
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYS----------- 213
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF---DIRVSNCLIDTYAKCGCIFS 244
QNG V +L+ F+AF +IR L+ YAK G I
Sbjct: 214 --------------QNGKVDEARLL--------FDAFVGKNIRTWTILLTGYAKEGRIEE 251
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
A ++FE S+ +N+VSW ++ISG+ +G K A + F+ M
Sbjct: 252 AREVFE--SMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 217/441 (49%), Gaps = 49/441 (11%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
+ L+T+ L L N L+ + + P A LY L + H P S
Sbjct: 158 QAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRA---GHHPTPHTLPSLLK 214
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDSSKLFDELP 130
S + V + L +HA K+G + V+ AL+ ++ LG L D+ L
Sbjct: 215 SLALSPAVPGAR-GLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAA 273
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------R 180
+ T+N +IT + G + AR+LF+EMP RN VSW+ +++GY + R
Sbjct: 274 SVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFAR 333
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDTY 236
P + ++ VL A Q G + + +HGY A +IR++ L+D Y
Sbjct: 334 MQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGY-----LKANNIRITVFLGTALVDMY 388
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A+++F+ ++ KN+++WT++I G AMHG G A+E F +M+++G+KP+ +
Sbjct: 389 AKCGEMQLAMEVFK--VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ L AC+H GL HYGC+VD+L R G L +A ++ +
Sbjct: 447 FIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM 506
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + D ++ L+ C FH NVE+ E V + +E+E G YVL+ NI A GR+ A
Sbjct: 507 PMK-PDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASA 565
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R +M E+ K PG S V
Sbjct: 566 REIRHLMREKGVDKTPGCSTV 586
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 196/372 (52%), Gaps = 34/372 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C S G QLH VI K GF + +V LV+ Y G + + F + +
Sbjct: 283 LMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSH 342
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
+WN ++ L++ G + AR LF++MP R+ VSW+ ++ GY + RS+ A
Sbjct: 343 TASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLN 402
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
S EP+E+T+ + L AI +G + + IH Y R D +S+ LID YAKCG I
Sbjct: 403 TSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTD-NLSSGLIDMYAKCGSIA 461
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A++ F ++ + ++ W ++I A+HG +++ F ++Q+ +KPN +TF+ VL+A
Sbjct: 462 DAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSA 521
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C H G HYGC+VD+LGRAG LE+AE++ +P + DV
Sbjct: 522 CCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK-PDV 580
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ +L A GNV +GER ++ ++++ +G + + NI A G + + +R+ +
Sbjct: 581 VIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWTNVSVVRKEL 640
Query: 402 DERNALKFPGRS 413
+ N + GRS
Sbjct: 641 QDANLERLTGRS 652
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 43/266 (16%)
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
P +H + V V T LV+ Y + L + LFD + RN VTWNVM+ G
Sbjct: 160 PATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTHRNTVTWNVMLNG 219
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEIT 192
VK ++ A +F +P R+ VSW ++DGY + + A E+
Sbjct: 220 YVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF----------------------DIRVS- 229
++ ++ A + AV Q +H K GF+A R+S
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSD 339
Query: 230 -------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
N L+ + G I A +LF+D+ ++ VSW+++ISG+ G A++ F
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDDM--PERDTVSWSTMISGYVQTGRSDMALKLF 397
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGG 308
M ++PN VT S L+A + G
Sbjct: 398 YSMLNTSIEPNEVTLASALSAIADSG 423
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 31/258 (12%)
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSL-GF 118
PL P FL+ + + G QLHA+ +K G S+V+V ++++ Y L
Sbjct: 7 PLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSS 58
Query: 119 LKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDG 174
L + +LFDE P R+ N ++ L + G L+ A+ L EEMP R+ VS+T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTA 118
Query: 175 YTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ R + A + P+E T+ + A + GA +IHG+ +R + F
Sbjct: 119 FARAGHAARAVAVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGF 178
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
I +N L+ YA + SA LF+ ++ +N V+W +++G+ M A E F R
Sbjct: 179 VIVATN-LVHAYAGVLELCSARALFDGMT--HRNTVTWNVMLNGYVKAKMIDMAAEVFWR 235
Query: 285 MQKVGLKPNRVTFLSVLN 302
+ + + V++L++++
Sbjct: 236 IP----ERDEVSWLTLID 249
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 46/370 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+S T++ ++ C + LG +H +I K G +S ++V+ ALV+M+V+ G L + LF
Sbjct: 513 NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+++P+R+LV+WN +I G V+ G +N V++ Y +M + +G
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHG--------------KNQVAFD-----YFKMMQESG--I 611
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P +IT +L A A+ + +H + F+ D+ V LI Y KCG I A
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDC-DVLVGTGLISMYTKCGSIEDAH 670
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++F + +KN+ SWTS+I+G+A HG GK A+E F +MQ+ G+KP+ +TF+ L+AC+H
Sbjct: 671 QVFHKLP--KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAH 728
Query: 307 GGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+VD+ GRAG L +A + + + E D V
Sbjct: 729 AGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVE-PDSRVWG 787
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LLGAC H NVE+ E+ +K LE++ + G +V++ NI A G + + ++R+VM +R
Sbjct: 788 ALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRG 847
Query: 406 ALKFPGRSLV 415
+K PG+S +
Sbjct: 848 VVKKPGQSWI 857
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 152/278 (54%), Gaps = 32/278 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL Y ++AF L++Q+ Q ++P D T+ ++ C + G
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQ------DSVKP--DKRTFVSMLNACADARNVDKG 230
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+L+ +I K G+ + ++V TAL+NM++ G + D++K+FD LP R+LVTW MITGL +
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A +LF+ M V +P ++ +++L A A+
Sbjct: 291 GRFKQACNLFQRMEEEGV---------------------QPDKVAFVSLLRACNHPEALE 329
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H ++ G++ +I V ++ Y KCG + AL++F+ V+ +N+VSWT++I+
Sbjct: 330 QGKKVHARMKEVGWDT-EIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIA 386
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
GFA HG A F +M + G++PNRVTF+S+L ACS
Sbjct: 387 GFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 137/263 (52%), Gaps = 32/263 (12%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+AFL + ++ + S + P + T+ ++ C + S G Q+ I + G+ S
Sbjct: 396 EAFLFFNKMIE------SGIEP--NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V TAL++MY G LKD+ ++F+++ ++N+V WN MIT V+ + + A + F+ +
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
+ +P+ T ++L + ++ + +H K G
Sbjct: 508 EGI---------------------KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ D+ VSN L+ + CG + SA LF D+ +++LVSW +II+GF HG + A + F
Sbjct: 547 S-DLHVSNALVSMFVNCGDLMSAKNLFNDMP--KRDLVSWNTIIAGFVQHGKNQVAFDYF 603
Query: 283 ERMQKVGLKPNRVTFLSVLNACS 305
+ MQ+ G+KP+++TF +LNAC+
Sbjct: 604 KMMQESGIKPDKITFTGLLNACA 626
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 24/237 (10%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
TYS L++ C+ G +++ I K G Q +++ L+NMY G + ++FD++
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
E+++ +WN+++ G V+ G E A L E+M + D S +P
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQM----------VQD-----------SVKPD 210
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ T +++L A V + ++ K G++ D+ V LI+ + KCG I A K+F
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDT-DLFVGTALINMHIKCGDIGDATKVF 269
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+++ ++LV+WTS+I+G A HG K A F+RM++ G++P++V F+S+L AC+H
Sbjct: 270 DNLPT--RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 197/362 (54%), Gaps = 40/362 (11%)
Query: 91 HAVISKVGFQS---HVYVNTALVNMYVSLGFLKDSSKLFDELPER-NLVTWNVMITGLVK 146
HA++SK G + Y+ +ALV Y G L +S ++FDELP + N +++ +
Sbjct: 104 HALLSKSGHAASSGDPYLASALVASYARSGHLAESRRVFDELPPHSDAAARNALLSAYAR 163
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITILA 195
G ++ A SLF MP RNV+SWT ++ GY + R G P+E+T+ +
Sbjct: 164 CGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSS 223
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VLPA GA+ + + Y RG ++ V+N L++ YAKCG I A +F I +
Sbjct: 224 VLPACAAVGALALGRKVERYARGRGMLT-NVYVANALVEMYAKCGSIRRAWMVFRGIGKQ 282
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
R +L SW S+I FA+HG+ + + F +++ G KP+ +TF+ V+ AC+HGGL
Sbjct: 283 R-DLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKL 341
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGRAG L++A+ + +P E D V+ LLGACSF
Sbjct: 342 LFNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPME-PDAVIWGALLGACSF 400
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN+E+ E K++ +E N + V++ NI A G++ ++ +++ E++ K G S
Sbjct: 401 HGNLELAEVAVEKLMRLEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAGYS 460
Query: 414 LV 415
+
Sbjct: 461 FI 462
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 226/441 (51%), Gaps = 47/441 (10%)
Query: 12 HSHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
H++L N +L + N+++ + + P+K+F Y ++ S + L+P
Sbjct: 61 HTYLDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILS----SGNGLKP-- 114
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T +FL++ C L G Q+H + + GF + +V T L+++Y LG L K+F
Sbjct: 115 DNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 174
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+ + + V M+T + G++ +AR LFE MP ++ ++W ++ GY ++ S A
Sbjct: 175 NSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALN 234
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ + +++++VL A Q GA+ + H Y E+ +R+ L+D Y
Sbjct: 235 LFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIK-ITVRLGTTLVDLY 293
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A+++F +E KN+ +W+S ++G AM+G G+ ++ F M++ G+ PN VT
Sbjct: 294 AKCGDMDKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVT 351
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+SVL CS G HYGCLVD+ RAGRLE A I +
Sbjct: 352 FVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQM 411
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + V LL A + N+E+G ++K+LE+E N G YVL+ NI A + +
Sbjct: 412 PMK-AHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNV 470
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R+ M + K PG S++
Sbjct: 471 SHVRQSMKSKGVRKQPGCSVM 491
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 192/380 (50%), Gaps = 49/380 (12%)
Query: 58 SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
S RP + T+ +I CV G +H ++ K G V V AL+N+Y G
Sbjct: 629 SEVGFRP--NEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTG 686
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
L S KLF++L +NLV+WN MI ++ G E + F N+ W G+
Sbjct: 687 DLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYF------NMSRWVGL------ 734
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+P + T LAVL G VR Q IHG GFNA + ++ L+D YA
Sbjct: 735 ---------KPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNA-NTCITTALLDLYA 784
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
K G + + +F +I+ + ++WT++++ +A HG G+ A+++FE M GL P+ VTF
Sbjct: 785 KLGRLEDSSTVFLEIT--SPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTF 842
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+LNACSH GL HY C+VD++GR+G L+ A + +P
Sbjct: 843 THLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMP 902
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
E + V LLGAC + + ++G + +++ E+E +G +Y+++ NI + G + DA
Sbjct: 903 MEPSS-GVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDAS 961
Query: 396 RLRRVMDERNALKFPGRSLV 415
R+R +M ++ ++ G S +
Sbjct: 962 RIRNLMKQKGLVRASGYSYI 981
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 27/201 (13%)
Query: 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+RM RS P+E+T L+++ A G IHG K G +++V N L++
Sbjct: 624 SRMMRSE-VGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLE-EVKVVNALMNL 681
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y K G + S+ KLFED+SV KNLVSW ++I +G+ + + F + VGLKP++
Sbjct: 682 YGKTGDLISSCKLFEDLSV--KNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQA 739
Query: 296 TFLSVLNAC--------SHG--GLHYGC-----------LVDMLGRAGRLEQAEKIALGI 334
TFL+VL C S G GL C L+D+ + GRLE + + L I
Sbjct: 740 TFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEI 799
Query: 335 PSEITDVVVRRILLGACSFHG 355
S D + +L A + HG
Sbjct: 800 TS--PDSMAWTAMLAAYATHG 818
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 203/380 (53%), Gaps = 36/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
+ TY ++ C LG Q+H + + G V ALV+MY G + + LF+
Sbjct: 161 AVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFE 220
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
+ R++ +W +I+GLV+ G+++ AR LF+ MP R+ ++WT ++DGY ++ R A
Sbjct: 221 GMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALET 280
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
E T+++V+ A Q GA+ + Y + G D+ V N LID Y+
Sbjct: 281 FRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIK-MDVFVGNALIDMYS 339
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG I AL +F+D+ ++ +WT+II G A++G G+ A++ F RM + P+ VTF
Sbjct: 340 KCGSIERALDVFKDM--HNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTF 397
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL AC+H GL HYGCL+D+LGRAG+L++A +P
Sbjct: 398 VGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMP 457
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ + + LL +C +GN E+GE ++LE++ N Y+L+ N+ A R+ D
Sbjct: 458 MK-PNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVR 516
Query: 396 RLRRVMDERNALKFPGRSLV 415
R+R+++ E+ K PG S++
Sbjct: 517 RIRQIIMEKGIKKEPGCSMI 536
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 116/292 (39%), Gaps = 76/292 (26%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN----LVTWNVMITGLV 145
+HA + K G +S+ + ++L+ MY + G + + + V WN +I+G
Sbjct: 78 IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G E + F +M AS + +T ++VL A +
Sbjct: 138 RSGRFELSCCSFVDMV---------------------RASAMATAVTYVSVLSACGKGKD 176
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI------------- 252
+ +H + G D RV N L+D YA+CG + +A LFE +
Sbjct: 177 LLLGMQVHKRVLESGVLP-DQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVIS 235
Query: 253 ------SVER----------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
V+R ++ ++WT++I G+ G + A+E F MQ ++ + T
Sbjct: 236 GLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFT 295
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQA 327
+SV+ AC+ G L G L+DM + G +E+A
Sbjct: 296 MVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERA 347
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 42/239 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT ++ C L G + ++G + V+V AL++MY G ++ + +F
Sbjct: 292 DEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVF 351
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
++ R+ TW +I GL G E A +D + RM R A
Sbjct: 352 KDMHNRDKFTWTAIILGLAVNGRGEEA------------------IDMFYRMLR---ALQ 390
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF-----NAFDIRVS----NCLIDTYA 237
P E+T + VL A G V + R F A++I + CLID
Sbjct: 391 TPDEVTFVGVLTACTHAGLV---------DKGREFFLSMTEAYNISPTVVHYGCLIDVLG 441
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+ G + AL + + + + N W ++++ ++G + ER+ + L P+ T
Sbjct: 442 RAGKLKEALDTIDKMPM-KPNSTIWGTLLASCRVYGNSEIGELAAERLLE--LDPDNST 497
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 193/349 (55%), Gaps = 36/349 (10%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
F SH+ + T L Y++ + +LF + R+LVT+N MITGL++ G + AR +F+
Sbjct: 102 FPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFD 161
Query: 159 EMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRN 208
MP + VSWT ++DG + R + A EP +T++A + A + GA+
Sbjct: 162 GMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGL 221
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+H + +IR++N LID YA+CG + A ++F+ S+ + +VSW S+I G
Sbjct: 222 GMWVHRLVTRERLEG-NIRIANSLIDMYARCGQVEFARQVFD--SMRNRTVVSWNSMIVG 278
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------- 309
FA +G A+E+FE M++ G +P+ VTF VL ACSH GL
Sbjct: 279 FAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHAGLTDEGLRYYKAMRAEHGITA 338
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYGC+VD+LGRAGRL +A + +P +VV+ +L G C HG+V+M E++ +
Sbjct: 339 RMEHYGCVVDLLGRAGRLGEAMSVVATMPMRPNEVVLGALLAG-CRMHGDVDMAEQLMQH 397
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+LE + G +YVL+ NI A G++ A ++R +M R K PGRS V
Sbjct: 398 LLEQDPGGDSNYVLLSNIYAATGKWDGAGKVRGLMKARGVKKRPGRSAV 446
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 217/441 (49%), Gaps = 49/441 (11%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
+ L+T+ L L N L+ + + P A LY L + H P S
Sbjct: 158 QAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRA---GHHPTPHTLPSLLK 214
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDSSKLFDELP 130
S + V + L +HA K+G + V+ AL+ ++ LG L D+ L
Sbjct: 215 SLALSPAVPGAR-GLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAA 273
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------R 180
+ T+N +IT + G + AR+LF+EMP RN VSW+ +++GY + R
Sbjct: 274 SVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFAR 333
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDTY 236
P + ++ VL A Q G + + +HGY A +IR++ L+D Y
Sbjct: 334 MQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGY-----LKANNIRITVFLGTALVDMY 388
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A+++F+ ++ KN+++WT++I G AMHG G A+E F +M+++G+KP+ +
Sbjct: 389 AKCGEMQLAMEVFK--VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ L AC+H GL HYGC+VD+L R G L +A ++ +
Sbjct: 447 FIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM 506
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + D ++ L+ C FH NVE+ E V + +E+E G YVL+ NI A GR+ A
Sbjct: 507 PMK-PDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASA 565
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R +M E+ K PG S V
Sbjct: 566 REIRHLMREKGVDKTPGCSTV 586
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 192/346 (55%), Gaps = 45/346 (13%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A++ Y L ++ LF+ +PER+L +WN MITGL++ G+L AR LF EMP +NV+S
Sbjct: 244 AMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVIS 303
Query: 168 WTGILDG-------------YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
WT ++ G ++RM +NGA +P++ T ++VL A + Q +H
Sbjct: 304 WTTMITGCVQEGESEEALKIFSRMLSTNGA--KPNQGTFVSVLGACSNLAGLGEGQQVHQ 361
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
K + VS LI+ Y+KCG + +A K+F+D +++LVSW II+ +A HG
Sbjct: 362 IISKTVYQDSTFVVS-ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGY 420
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
GK A+ F+ M+K G KP+ VT++ +L+ACSH GL HY
Sbjct: 421 GKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYA 480
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI---LLGACSFHGNVEMGERVTRKVLE 369
CLVD+ GRAGRL++ A G + R+ LL C+ H NV++G++ +K+LE
Sbjct: 481 CLVDLCGRAGRLKE----AFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLE 536
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+E N G Y+L+ NI A G++ +A R+R M ++ K PG S +
Sbjct: 537 VEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 582
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 157/350 (44%), Gaps = 59/350 (16%)
Query: 63 RPLFDSFTYSFLIR-TCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
R LFD +I T V Y G + + +V + +V TA+V Y+ +
Sbjct: 72 RRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKI 131
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
D+ KLF+E+P +N+V+WN MI G + G ++ A LFE+MP RNVVSW ++ +
Sbjct: 132 SDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCG 191
Query: 180 RSNGAS------TEPSEITILAVLPAIWQNGAVRNCQL----------------IHGYGE 217
R A E I+ A++ + +NG + +L I GY +
Sbjct: 192 RIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQ 251
Query: 218 ----KRGFNAF------DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ F D+ N +I + G + A KLF ++ +KN++SWT++I+
Sbjct: 252 NLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMP--KKNVISWTTMIT 309
Query: 268 GFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSH-GGLHYG------------- 312
G G + A++ F RM G KPN+ TF+SVL ACS+ GL G
Sbjct: 310 GCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQ 369
Query: 313 -------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
L++M + G L A K+ + D+V ++ A + HG
Sbjct: 370 DSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHG 419
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 14/176 (7%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGILDGY 175
G + ++ +LFDE+ E +++TW +I+G +K G +E AR LF+ + +NVV+WT ++ GY
Sbjct: 66 GRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGY 125
Query: 176 TRMNRSNGASTEPSE------ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
R N+ + A +E ++ ++ QNG + + + +R ++
Sbjct: 126 IRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSW----- 180
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
N ++ A+CG I A +LF+ + ++++SWT++I+G + +G A F+RM
Sbjct: 181 NTVMSMLAQCGRIEEARRLFD--RMPERDVISWTAMIAGLSKNGRIDEARLLFDRM 234
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 59/230 (25%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
N+ N MIT L K G + AR LF+EM +V++WT ++ GY +
Sbjct: 51 NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIK--------------- 95
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDTYAKCGCIFSALKL 248
C +I +R F+ D + + ++ Y + I A KL
Sbjct: 96 ----------------CGMIE--EARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKL 137
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F ++ KN+VSW ++I G+A +G +A+ FE+M P R N S
Sbjct: 138 FNEMP--NKNVVSWNTMIDGYAQNGRIDSAMYLFEKM------PER-------NVVS--- 179
Query: 309 LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
+ ++ ML + GR+E+A ++ +P DV+ ++ S +G ++
Sbjct: 180 --WNTVMSMLAQCGRIEEARRLFDRMPER--DVISWTAMIAGLSKNGRID 225
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 215/412 (52%), Gaps = 55/412 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++FN++ YS +P + F L+ ++ + + P D++T+ L++ C
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILE------DGILP--DNYTFPSLLKACAVAKALE 146
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH + K+G +VYV L+NMY + + +FD + E +V +N MITG
Sbjct: 147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYA 206
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ A SLF EM G +P+EIT+L+VL + G+
Sbjct: 207 RRNRPNEALSLFREM---------------------QGKYLKPNEITLLSVLSSCALLGS 245
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IH Y +K F + ++V+ LID +AKCG + A+ +FE + K+ +W+++
Sbjct: 246 LDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSIFE--KMRYKDTQAWSAM 302
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG----------------- 308
I +A HG + ++ FERM+ ++P+ +TFL +LNACSH G
Sbjct: 303 IVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFG 362
Query: 309 -----LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HYG +VD+L RAG LE A + +P T ++ RILL ACS H N+++ E+V
Sbjct: 363 IVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTP-MLWRILLAACSSHNNLDLAEKV 421
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++ E++ +GGDYV++ N+ A ++ + LR+VM +R A+K PG S +
Sbjct: 422 SERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSI 473
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 34/212 (16%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAVLPA 199
+ YAR LFE M ++V + + GY+R + P T ++L A
Sbjct: 79 MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
A+ + +H K G + ++ V LI+ Y +C + SA +F+ I VE +
Sbjct: 139 CAVAKALEEGRQLHCLSMKLGLDD-NVYVCPTLINMYTECEDVDSARCVFDRI-VE-PCV 195
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-------------H 306
V + ++I+G+A A+ F MQ LKPN +T LSVL++C+ +
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 307 GGLHYGC--------LVDMLGRAGRLEQAEKI 330
H C L+DM + G L+ A I
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSI 287
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 219/431 (50%), Gaps = 45/431 (10%)
Query: 19 NSLLHHTLLF-NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
NS+ H T+ N ++ + D P+ + LY + + + + + T +F+++
Sbjct: 90 NSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAP-------NKHTLTFVLQA 142
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVT 136
C G Q+ + K+GF V+V AL+++Y + ++ + ++FDE+P R++V+
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVS 202
Query: 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------ST 186
WN MI G V+ G++ A+ LF EMP ++V+SW I+ G + A
Sbjct: 203 WNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKL 262
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+E ++++L A Q G + + IH F + L+D YAKCGCI +
Sbjct: 263 RPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRF-PMTASLGTALVDMYAKCGCIDESR 321
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
LF+ + K+ SW +I G A HG+G+ A+ FE+ G P VTF+ VL ACS
Sbjct: 322 FLFDRMP--EKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSR 379
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HYGC+VD+L RAG + A ++ +P+ D V+
Sbjct: 380 AGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAP-PDPVLW 438
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
+LG+C HG +E+GE + K+++M+ + G YV + I A + ++ D ++RR+M ER
Sbjct: 439 ASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAER 498
Query: 405 NALKFPGRSLV 415
N+ K G SL+
Sbjct: 499 NSNKIAGWSLI 509
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 224/449 (49%), Gaps = 69/449 (15%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYS----LADS-------PKKAFLLYKQLQQIYTHSH 59
+H+HL+ ++ L +H +L N +++ Y+ L D+ P K + + L ++ ++
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168
Query: 60 SPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
P L + FT S L++ + + GTQLHA K G+QS VYV +
Sbjct: 169 RPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
ALV+MY G + + FD +P ++ V+WN +I+G + GE E+A L
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLL---------- 278
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
W +M R N +P+ T +V A GA+ + +H + K G
Sbjct: 279 W--------KMQRKN---FQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAF- 326
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+ N L+D YAK G I A ++F+ + + ++VSW ++++G A HG+GK ++ FE+M +
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRLV--KPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR 384
Query: 288 VGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQ 326
+G++PN ++FL VL ACSH GL HY VD+LGR G L++
Sbjct: 385 IGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDR 444
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
AE+ +P E T V LLGAC H N+E+G + E++ + G +L+ NI A
Sbjct: 445 AERFIREMPIEPT-AAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYA 503
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ D ++R++M E K P S V
Sbjct: 504 SAGRWRDVAKVRKMMKESGVKKQPACSWV 532
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 147/324 (45%), Gaps = 51/324 (15%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
YS L++ C L G +HA + F +H+ + +VNMY G L D+ ++FDE+
Sbjct: 90 YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P +++VTW +I G + A LF +M R+ +P+
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQM---------------LRLG------LQPN 188
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
T+ ++L A + +H + K G+ + + V + L+D YA+CG + +A F
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQS-SVYVGSALVDMYARCGHMDAAQLAF 247
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGG 308
+ + K+ VSW ++ISG A G G+ A+ +MQ+ +P T+ SV +AC S G
Sbjct: 248 DGMPT--KSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGA 305
Query: 309 LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
L G L+DM +AG ++ A+++ + DVV +L
Sbjct: 306 LEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVK--PDVVSWNTML 363
Query: 349 GACSFHGNVEMGERVTRKVLEMER 372
C+ HG +G+ + +M R
Sbjct: 364 TGCAQHG---LGKETLDRFEQMLR 384
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 130/376 (34%), Positives = 189/376 (50%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ YV G L ++ FDE+PE+N V++N MI G V+ +++ AR LFE MPC
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPC 325
Query: 163 RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG------------ 204
RN+ SW ++ GY ++ A + ++ A++ Q+G
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385
Query: 205 ---------AVRNCQL--------------IHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A C L IHG K G+ V N L+ Y KCG
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-GCFVGNALLAMYFKCGS 444
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A FE I E K++VSW ++++G+A HG G+ A+ FE M+ G+KP+ +T + VL
Sbjct: 445 IDEANDTFEGI--EEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH GL HY C++D+LGRAGRLE+A+ + +P +
Sbjct: 503 SACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ-P 561
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
LLGA HGN E+GE+ V +ME N G YVL+ N+ A GR+VDA+++R
Sbjct: 562 GAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRS 621
Query: 400 VMDERNALKFPGRSLV 415
M + K PG S V
Sbjct: 622 KMRDIGVQKVPGYSWV 637
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 44/278 (15%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+ +V L D+ LFD++P R+ ++WN MI+G + G L AR LF+E P R+V +W
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTW 269
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN------ 222
T ++ GY + NG E T +P + V +I GY + + +
Sbjct: 270 TAMVSGYVQ----NGMLDEAK--TFFDEMP---EKNEVSYNAMIAGYVQTKKMDIARELF 320
Query: 223 ----AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+I N +I Y + G I A K F+ + +++ VSW +II+G+A G + A
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFD--MMPQRDCVSWAAIIAGYAQSGHYEEA 378
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACS-----------HG-----GLHYGCLVD-----M 317
+ F +++ G NR TF L+ C+ HG G GC V M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
+ G +++A GI E DVV +L + HG
Sbjct: 439 YFKCGSIDEANDTFEGI--EEKDVVSWNTMLAGYARHG 474
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 41/207 (19%)
Query: 117 GFLKDSS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
G+L++S LFD++PER+L +WNVM+TG V+ L AR LF+ MP ++VVSW +
Sbjct: 89 GYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSL 148
Query: 172 LDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVR-----------------N 208
L GY + + A E + I+ +L A NG + N
Sbjct: 149 LSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWN 208
Query: 209 CQLIHGYGEKRG-------FNAFDIRVS---NCLIDTYAKCGCIFSALKLFEDISVERKN 258
C L+ G+ K+ F+ +R + N +I YA+ G + A +LF++ ++
Sbjct: 209 C-LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT--RD 265
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERM 285
+ +WT+++SG+ +GM A F+ M
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEM 292
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 27/221 (12%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+ + TC ++ LG Q+H K+G+ + +V AL+ MY G + +++ F+ +
Sbjct: 396 TFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGI 455
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
E+++V+WN M+ G + G A ++FE M A +P
Sbjct: 456 EEKDVVSWNTMLAGYARHGFGRQALTVFESMKT---------------------AGVKPD 494
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
EIT++ VL A G + R + + + G + C+ID + G + A L
Sbjct: 495 EITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYT-CMIDLLGRAGRLEEAQDL 553
Query: 249 FEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQ 286
++ + SW +++ +HG +G+ A E +M+
Sbjct: 554 IRNMPFQ-PGAASWGALLGASRIHGNTELGEKAAEMVFKME 593
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
++ ++ G + +F+ +P R+ V++N MI+G ++ + AR+LF++MP R++ SW
Sbjct: 56 ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115
Query: 170 GILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNC-QLIHGYGEKRGFN 222
+L GY R R A E ++ ++L QNG V ++ EK +
Sbjct: 116 VMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSIS 175
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
N L+ Y G I A LFE S +L+SW ++ GF
Sbjct: 176 W------NGLLAAYVHNGRIEEACLLFE--SKSDWDLISWNCLMGGF 214
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ + +++ WN I+ ++ G + A +F MP R+ VS+ ++ GY R ++ N A
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 189 SEITILAVLP-AIWQNGAVRNCQLIHGYGEKRGFNAF---DIRVSNCLIDTYAKCGCIFS 244
++ + + G VRNC+L +R F+ D+ N L+ YA+ G +
Sbjct: 104 DQMPERDLFSWNVMLTGYVRNCRLGDA---RRLFDLMPEKDVVSWNSLLSGYAQNGYVDE 160
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
A ++F+++ KN +SW +++ + +G + A FE
Sbjct: 161 AREVFDNMP--EKNSISWNGLLAAYVHNGRIEEACLLFE 197
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 223/414 (53%), Gaps = 56/414 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T+ F TL+ Y+ + +A L+ +L H + P + FT++ +++ C T+
Sbjct: 103 NTISFVTLIQGYAESVRFLEAIELFVRL-------HREVLP--NQFTFASVLQACATMEG 153
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
NLG Q+H + K+G S V+V+ AL+++Y G +++S +LF E P RN VTWN +I G
Sbjct: 154 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 213
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V+ G+ E A LF M V + +E+T + L A
Sbjct: 214 HVQLGDGEKALRLFLNMLEYRV---------------------QATEVTYSSALRACASL 252
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
A+ IH K F+ DI V+N LID YAKCG I A +F+ ++ +++ VSW
Sbjct: 253 AALEPGLQIHSLTVKTTFDK-DIVVTNALIDMYAKCGSIKDARLVFDLMN--KQDEVSWN 309
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
++ISG++MHG+G+ A+ F++MQ+ +KP+++TF+ VL+AC++ GL
Sbjct: 310 AMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQD 369
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HY C+V +LGR G L++A K+ IP + + V+V R LLGAC H ++E+G
Sbjct: 370 HGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPS-VMVWRALLGACVIHNDIELGR 428
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++VLEME + +VL+ N+ A R+ + +R+ M + K PG S +
Sbjct: 429 ISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWI 482
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 48/327 (14%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
F+S Y+ ++ C+ P+ G LH I K G ++ L+NMYV FL D+SKL
Sbjct: 36 FNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKL 95
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FDE+PERN +++ +I G YA S V + ++ + R++R
Sbjct: 96 FDEMPERNTISFVTLIQG--------YAES----------VRFLEAIELFVRLHR----E 133
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P++ T +VL A + IH + K G ++ D+ VSN L+D YAKCG + ++
Sbjct: 134 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHS-DVFVSNALMDVYAKCGRMENS 192
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC- 304
++LF + +N V+W ++I G G G+ A+ F M + ++ VT+ S L AC
Sbjct: 193 MELFAE--SPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250
Query: 305 SHGGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
S L G L+DM + G ++ A ++ + ++ D V
Sbjct: 251 SLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNK-QDEVSW 308
Query: 345 RILLGACSFHGNVEMGERVTRKVLEME 371
++ S HG R+ K+ E E
Sbjct: 309 NAMISGYSMHGLGREALRIFDKMQETE 335
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 233/477 (48%), Gaps = 81/477 (16%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
+ +IH+ L+T+ ++ + L+ N F+ A P A L Q+ P
Sbjct: 23 KIFKKIHAQLITSG-VVSNDLVVNRAAEFF--AKGPNFADYACDFLSQM----EDGFLPY 75
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
FT+ ++++C + G Q+H VI+K+ F +YV +LV+ Y G L D+S++
Sbjct: 76 M--FTFPAVLKSCAKFMAVDEGRQVHGVIAKMDFVCDIYVENSLVHFYSVCGSLDDASRV 133
Query: 126 FDELPERNLVTW----------------------------------NVMITGLVKWGELE 151
FDE+ R+ V+W N ++ VK L
Sbjct: 134 FDEMLVRDAVSWTGVIYPGIKGYLILGKGIHGLIIERGFGLGLEVSNALMDMYVKCESLP 193
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVLPAIW 201
+ +F+E+P +++VSWT I+ G + + EP I + +VL A
Sbjct: 194 EEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSVLSARA 253
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
GA+ +L+ Y + + +DI++ ++D YAKCGCI A+++F + KN+++
Sbjct: 254 SPGALDYGRLVREYIDHKAIK-WDIQIGTAVVDMYAKCGCIEMAMQIFN--VMPHKNVLT 310
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W ++++G AMHG G+ A++ FE M + G++PN VTFL L AC H G
Sbjct: 311 WNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEGRRYFHWMK 370
Query: 310 -----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
HYGC+VD+L RAG L++A ++ +P + DV + LL C +GNVE
Sbjct: 371 SQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPM-LPDVRIMGALLSTCKANGNVE 429
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + +++E + + G YVL+ NILA R+ D R+RR+M + K PG S++
Sbjct: 430 LPREILDRLVEFDSRDSGVYVLLSNILAINQRWADVTRIRRLM-KMGIEKTPGSSVI 485
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 213/408 (52%), Gaps = 56/408 (13%)
Query: 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82
H+ L+N L+ Y+ + A LY Q+ + + P D+FT+ F+++ C LS
Sbjct: 139 HNIFLWNVLIRGYAWNGPYEAAVQLYYQM---FDYGLVP-----DNFTFPFVLKACAALS 190
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
G ++H + + G++ V+V AL++MY G + + ++FD++ R+ V WN M+
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
+ G + SL EM +L G P+E T++ + A
Sbjct: 251 AYSQNGHPDACLSLCSEM----------VLTGL-----------RPTEATLVTAISASAD 289
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
N A+ + +HG ++ F + D +V L+D YAKCG + A LFE + V+R +VSW
Sbjct: 290 NAALPQGRELHGLSWRQEFESHD-KVKTALVDMYAKCGSVRVARNLFERLGVKR--VVSW 346
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
++I+G+AMHG A++ FE M +V KP+ +TF+ VL+ACSHGGL
Sbjct: 347 NAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIR 405
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY C+VD+LG +GRL++A + + + + D V LL +C H NVE+G
Sbjct: 406 DYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQM-KVLPDSGVWGALLNSCKIHANVELG 464
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
E +++E+E + G+YV++ NI A G++ +LR++M +R K
Sbjct: 465 EIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKK 512
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y+ L+++C+ G QLHA + GF + T LVN+Y L + LFD +P
Sbjct: 78 YASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIP 137
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+ N+ WNV+I G G E A L+ +M +V P
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV---------------------PDN 176
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T VL A A+ + + IH + + G+ D+ V LID YAKCGC+ SA ++F+
Sbjct: 177 FTFPFVLKACAALSAIEHGREIHEHVVQTGWEK-DVFVGAALIDMYAKCGCVGSAREVFD 235
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
I V ++ V W S+++ ++ +G A + M GL+P T ++ ++A
Sbjct: 236 KILV--RDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISA 286
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P+ ++L + A++ + +H GF FD ++ L++ Y C + SA
Sbjct: 73 PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGF-GFDTVIATKLVNLYCVCDSLSSARL 131
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
LF+ I + N+ W +I G+A +G +AAV+ + +M GL P+ TF VL AC+
Sbjct: 132 LFDRIP--KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 135/404 (33%), Positives = 203/404 (50%), Gaps = 51/404 (12%)
Query: 57 HSHS------PLRPLFDSFTYSFLIRTCVTLSYP-------NLGTQLHAVISKVGFQSHV 103
H+HS P L L+ T TLS + G LH K+
Sbjct: 362 HAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSPGRALHGYAFKLALAGDS 421
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDE-LPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
YV TAL+ MY G + LFD+ LP+ ++V+ M+T G L+ ARSLF+ +P
Sbjct: 422 YVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPT 481
Query: 163 RNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLI 212
++ V W ++DGYT+ R N G+ EP E+T++ VL A+ Q G V + + +
Sbjct: 482 KDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWL 541
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y + +RV LID Y KCG + A+ +F I K++V W ++I+G+AMH
Sbjct: 542 HSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG--DKDIVVWNAMINGYAMH 599
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G + A+E F + ++ GL P +TF+ +LNACSH G+ H
Sbjct: 600 GDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEH 659
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLE 369
YGC+VD+LGRAG +++A L +IT D V+ LL AC H N+ +G+++ ++
Sbjct: 660 YGCMVDLLGRAGLIKEA--FCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVA 717
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
N G Y+L+ NI A VG + + R+R +M K PG S
Sbjct: 718 KGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCS 761
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 130/376 (34%), Positives = 189/376 (50%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ YV G L ++ FDE+PE+N V++N MI G V+ +++ AR LFE MPC
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPC 325
Query: 163 RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG------------ 204
RN+ SW ++ GY ++ A + ++ A++ Q+G
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385
Query: 205 ---------AVRNCQL--------------IHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A C L IHG K G+ V N L+ Y KCG
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-GCFVGNALLAMYFKCGS 444
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A FE I E K++VSW ++++G+A HG G+ A+ FE M+ G+KP+ +T + VL
Sbjct: 445 IDEANDTFEGI--EEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH GL HY C++D+LGRAGRLE+A+ + +P +
Sbjct: 503 SACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ-P 561
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
LLGA HGN E+GE+ V +ME N G YVL+ N+ A GR+VDA+++R
Sbjct: 562 GAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRS 621
Query: 400 VMDERNALKFPGRSLV 415
M + K PG S V
Sbjct: 622 KMRDIGVQKVPGYSWV 637
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 44/278 (15%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+ +V L D+ LFD++P R+ ++WN MI+G + G L AR LF+E P R+V +W
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTW 269
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN------ 222
T ++ GY + NG E T +P + V +I GY + + +
Sbjct: 270 TAMVSGYVQ----NGMLDEAK--TFFDEMP---EKNEVSYNAMIAGYVQTKKMDIARELF 320
Query: 223 ----AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+I N +I Y + G I A K F+ + +++ VSW +II+G+A G + A
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFD--MMPQRDCVSWAAIIAGYAQSGHYEEA 378
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACS-----------HG-----GLHYGCLVD-----M 317
+ F +++ G NR TF L+ C+ HG G GC V M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
+ G +++A GI E DVV +L + HG
Sbjct: 439 YFKCGSIDEANDTFEGI--EEKDVVSWNTMLAGYARHG 474
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 41/207 (19%)
Query: 117 GFLKDSS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
G+L++S LFD++PER+L +WNVM+TG V+ L AR LF+ MP ++VVSW +
Sbjct: 89 GYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSL 148
Query: 172 LDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVR-----------------N 208
L GY + + A E + I+ +L A NG + N
Sbjct: 149 LSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWN 208
Query: 209 CQLIHGYGEKRG-------FNAFDIRVS---NCLIDTYAKCGCIFSALKLFEDISVERKN 258
C L+ G+ K+ F+ +R + N +I YA+ G + A +LF++ ++
Sbjct: 209 C-LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT--RD 265
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERM 285
+ +WT+++SG+ +GM A F+ M
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEM 292
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 27/221 (12%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+ + TC ++ LG Q+H K+G+ + +V AL+ MY G + +++ F+ +
Sbjct: 396 TFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGI 455
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
E+++V+WN M+ G + G A ++FE M A +P
Sbjct: 456 EEKDVVSWNTMLAGYARHGFGRQALTVFESMKT---------------------AGVKPD 494
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
EIT++ VL A G + R + + + G + C+ID + G + A L
Sbjct: 495 EITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYT-CMIDLLGRAGRLEEAQDL 553
Query: 249 FEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQ 286
++ + SW +++ +HG +G+ A E +M+
Sbjct: 554 IRNMPFQ-PGAASWGALLGASRIHGNTELGEKAAEMVFKME 593
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
++ ++ G + +F+ +P R+ V++N MI+G ++ + AR+LF++MP R++ SW
Sbjct: 56 ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115
Query: 170 GILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNC-QLIHGYGEKRGFN 222
+L GY R R A E ++ ++L QNG V ++ EK +
Sbjct: 116 VMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSIS 175
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
N L+ Y G I A LFE S +L+SW ++ GF
Sbjct: 176 W------NGLLAAYVHNGRIEEACLLFE--SKSDWDLISWNCLMGGF 214
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ + +++ WN I+ ++ G + A +F MP R+ VS+ ++ GY R ++ N A
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 189 SEITILAVLP-AIWQNGAVRNCQLIHGYGEKRGFNAF---DIRVSNCLIDTYAKCGCIFS 244
++ + + G VRNC+L +R F+ D+ N L+ YA+ G +
Sbjct: 104 DQMPERDLFSWNVMLTGYVRNCRLGDA---RRLFDLMPEKDVVSWNSLLSGYAQNGYVDE 160
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
A ++F+++ KN +SW +++ + +G + A FE
Sbjct: 161 AREVFDNMP--EKNSISWNGLLAAYVHNGRIEEACLLFE 197
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 18/67 (26%)
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
HY C++D+LGR RLE+ LLGA HGN E+GE+ + +
Sbjct: 802 HYTCMIDLLGRVDRLEEG------------------ALLGASRIHGNTELGEKAAQMFFK 843
Query: 370 MERGNGG 376
M N G
Sbjct: 844 MGPQNSG 850
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 215/404 (53%), Gaps = 44/404 (10%)
Query: 54 IYTHSHSPLRPLF----------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103
I T SH+ +R + +T+ F+ + C G Q+ K+G +S++
Sbjct: 8 IPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNL 67
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163
+V A++ MY + G + ++ ++FD +++L +WN+MI G V GE+ A+ +F+EM R
Sbjct: 68 FVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSER 127
Query: 164 NVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIH 213
+VVSWT I+ GY ++ A P+E T+ + L A A+ + IH
Sbjct: 128 DVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIH 187
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
Y +K + R+ L+D YAKCG I A K+F D + + W ++I G+AMHG
Sbjct: 188 VYIDKSEIK-MNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHG 246
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
K A++ FE+M+ + PN+VTF+++LNACSHG L HY
Sbjct: 247 KSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHY 306
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VD+LGR+G L++AE+ +P D + LLGAC H ++E G+R+ + + E++
Sbjct: 307 GCMVDLLGRSGLLKEAEETVFNMPMA-PDATIWGALLGACRIHKDIERGQRIGKIIKELD 365
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ G +VL+ N+ + G++ +A+ +R+ ++ K PG S +
Sbjct: 366 SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 409
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 141/484 (29%), Positives = 223/484 (46%), Gaps = 103/484 (21%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ NT++ Y + P A Y +Q+ +P + +T+ L++ C +
Sbjct: 123 AFICNTIMRTYVNVNDPYTALGFY--YEQMVRKCVAP-----NHYTFPLLVKVCWEIGSI 175
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS--------------------- 123
G ++HA I K GF+ ++V +L++MY G + D+
Sbjct: 176 GDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGY 235
Query: 124 ----------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
+LF+E+PER+L +WN MI G V G++ A LF +MP R++VSW ++D
Sbjct: 236 VKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMID 295
Query: 174 GYT----------------------------------------RMNRSNGASTEPSEITI 193
GY RM T P+E T+
Sbjct: 296 GYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATL 355
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
++VL A G + + IH Y + D+ +S L+ YAKCG + A +F+ +S
Sbjct: 356 VSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMS 415
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+++VSW S+I G+ MHG A+E F M+K G PN TF+ VL+AC+H G+
Sbjct: 416 --NRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEG 473
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYGC+VD+LGRAG ++ E++ +P E + LL AC
Sbjct: 474 WWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPME-GGTALWGALLSAC 532
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H N E+ E V ++++E+E + G Y+L+ NI A G++ D E +R++M ER K G
Sbjct: 533 RTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTG 592
Query: 412 RSLV 415
S V
Sbjct: 593 FSWV 596
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 150 LEYARSLFE--EMP----CRNVV-SWTGILDGYTRM----NRSNGASTEPSEITILAVLP 198
+++A SLFE E P C ++ ++ + D YT + + P+ T ++
Sbjct: 108 VQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVK 167
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
W+ G++ + + IH K GF D+ V N LI Y+ CG I A +FE S+ +
Sbjct: 168 VCWEIGSIGDGEKIHARILKFGFE-LDLFVRNSLIHMYSVCGRIGDARAMFEVCSI--SD 224
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LV+W S+I G+ +G AA E FE M + L
Sbjct: 225 LVTWNSMIDGYVKNGEIGAARELFEEMPERDL 256
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 139/486 (28%), Positives = 239/486 (49%), Gaps = 107/486 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ L N+++ Y +F Y+ L++ + L P D+FT++ + ++C
Sbjct: 42 SFLCNSMIKAYLETRHYNDSFAFYRDLRK-----ETCLAP--DNFTFTTMTKSCTLSMCV 94
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMY------------------------------- 113
G QLH+ I + GF + +YV+T +V+MY
Sbjct: 95 YQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGY 154
Query: 114 VSLGFLKDSSKLFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
V G L +SKLFD++P+ +++V +N M+ G VK G++ AR LF+EM + V++WT ++
Sbjct: 155 VRFGELDLASKLFDQMPQVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMI 214
Query: 173 DGYTRMNRSNGA------------------------------------------STEPSE 190
GY N + A S +P +
Sbjct: 215 HGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDD 274
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+TIL+VLPAI GA+ + H + +++ + ++V ++D Y+KCG I A ++F+
Sbjct: 275 VTILSVLPAISDTGALSLGEWCHCFVQRKNLDK-KVKVCTAILDMYSKCGEIEKAKRIFD 333
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ K + SW ++I G+A++G AA++ F M K KP+ +T L+V++AC+HGGL
Sbjct: 334 EMP--EKQVASWNAMIHGYALNGNAHAALDLFLTMAKEE-KPDEITMLAVISACNHGGLV 390
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAG L+QAE + +P + +++ L
Sbjct: 391 EEGRKWFQMMRKFGLNAKIEHYGCMVDLLGRAGNLKQAEHLITNMPFKPNGIILSS-FLS 449
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC + ++E ER+ +K +E+E N G+YVL+ N+ A R+ D ++ +M + A K
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNMMRKNEAKKE 509
Query: 410 PGRSLV 415
G SL+
Sbjct: 510 VGCSLI 515
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 210/410 (51%), Gaps = 54/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTLL Y A S A + L ++ +P D++T+ L++ C G
Sbjct: 90 YNTLLRGY--ARSSDGAAEAARVLARMLEEGVAP-----DTYTFVSLLKACAAARAGEEG 142
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN-LVTWNVMITGLVK 146
Q H V K G H YV L+NMY G + + +F +P + +V++N MIT V+
Sbjct: 143 RQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVR 202
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
A LF EM + + +P+ +T+ +VL A GA+
Sbjct: 203 SSRPGEALVLFREMQAKGL---------------------KPTSVTVTSVLSACALLGAL 241
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y K G ++ ++V+ LID Y KCG + A+ +F+ +E ++ +W+ +I
Sbjct: 242 ELGRWIHEYVRKAGLDSL-VKVNTALIDMYGKCGSLEDAIDVFQ--GMESRDRQAWSVMI 298
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+A H G+ A+ FE M+K G++P+ VTFL VL ACSH G+
Sbjct: 299 VAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMREYGIV 358
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+ D+L R+G+LE+A K +P + T ++ R LL AC HG V++G+RV
Sbjct: 359 PGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPT-AILWRTLLSACGSHGAVDLGKRVFE 417
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++LE++ +G DYV+ N+ A G++ + R+R++M+E+ +K PG S +
Sbjct: 418 RILELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSI 467
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 106/284 (37%), Gaps = 66/284 (23%)
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLHA K G +H + T L+ + G
Sbjct: 36 AQLHAAAVKSGLGAHPALVTRLLTLCTKQG---------------------------AAP 68
Query: 148 GELEYARSLFEEMPCRNVVSW-TGILDGYTRMNRSNGAS-------------TEPSEITI 193
L YAR +F+ +P V W +L GY R S+GA+ P T
Sbjct: 69 AHLAYARQVFDRIPTPGDVVWYNTLLRGYAR--SSDGAAEAARVLARMLEEGVAPDTYTF 126
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+++L A A + HG K G + V LI+ YA+CG SA +F +
Sbjct: 127 VSLLKACAAARAGEEGRQAHGVAVKTGAADHEY-VLPTLINMYAECGDARSARAMFGRVP 185
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGGLHYG 312
+VS+ ++I+ A+ F MQ GLKP VT SVL+AC+ G L G
Sbjct: 186 -NGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELG 244
Query: 313 --------------------CLVDMLGRAGRLEQAEKIALGIPS 336
L+DM G+ G LE A + G+ S
Sbjct: 245 RWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMES 288
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 228/478 (47%), Gaps = 106/478 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L N+++ Y ++F LY+ L++ S +P DSFT+S L ++C
Sbjct: 52 AFLCNSMIKAYVGMRQYSESFALYRDLRR--NTSFTP-----DSFTFSVLAKSCALNMAI 104
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW------- 137
G ++H+ + VGF +Y TALV+MY G + + KLFDE+ +R+ V+W
Sbjct: 105 WEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGY 164
Query: 138 ------------------------NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
N MI VK G++ AR LF+EMP R+VVSWT ++
Sbjct: 165 VRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIY 224
Query: 174 GYT------------------------------RMNR------------SNGASTEPSEI 191
GY+ R N+ + S EP E+
Sbjct: 225 GYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEV 284
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
TI++VLPAI GA+ +H + ++ + V LID YAKCG I + +F++
Sbjct: 285 TIVSVLPAIADLGALDLGGWVHRFVRRKKLDR-ATNVGTALIDMYAKCGEIVKSRGVFDN 343
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ K SW ++I+ FA++G K A+ F M G PN +T + VL+AC+H GL
Sbjct: 344 MP--EKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVE 401
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC+VD+LGRAG L++AEK+ +P E +++ L A
Sbjct: 402 EGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLF-A 460
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
C + +V ERV ++ ++ME N G+Y+++ N+ A R+ +A+ ++ +M RN +K
Sbjct: 461 CGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLM-RRNGVK 517
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 141/487 (28%), Positives = 229/487 (47%), Gaps = 108/487 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
LL+NTL+ + P AF ++ ++Q + D+FTY FL++ C +
Sbjct: 80 VLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCA--------DNFTYPFLLKACSGKVWV 131
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMY------------------------------- 113
+ +HA + K+GF ++V +L++ Y
Sbjct: 132 RVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIG 191
Query: 114 --VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
V +G L ++ +LFDE+PER+ V+WN ++ G VK GE+ A LFE+MP RNVVSW+ +
Sbjct: 192 GLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTM 251
Query: 172 LDGYTRM-----------------------------------------NRSNGASTEPSE 190
+ GY++ N+ A + +
Sbjct: 252 VLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDD 311
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T++++L A +G + + +H E+ F VSN LID YAKCG + +AL +F
Sbjct: 312 GTVISILSACAVSGLLGLGKRVHASIERTRFKC-STPVSNALIDMYAKCGSLENALSIFH 370
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+ RK++VSW +II G AMHG G+ A++ F RM+ G P++VTF+ VL AC+H G
Sbjct: 371 GMV--RKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFV 428
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGC+VD+LGR GRL++A ++ +P E + ++ LL
Sbjct: 429 DEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLE-PNAIIWGTLL 487
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
GAC H + E V ++++ E + G+ ++ NI A G + + +R M + K
Sbjct: 488 GACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQK 547
Query: 409 FPGRSLV 415
G S +
Sbjct: 548 PSGGSSI 554
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 185/359 (51%), Gaps = 34/359 (9%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G QLH + K GF + ++ T ++ Y + G + + F+ + +L +WN + G +K
Sbjct: 336 GWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIK 395
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
G +++A F++M R+V SW+ ++ GY + A +P+E+T+++V
Sbjct: 396 NGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSV 455
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
AI G ++ +L H Y F+ + LID YAKCG I SAL+ F I E
Sbjct: 456 FSAIATLGTLQEGKLAHEYMRSESI-PFNDNLRAALIDMYAKCGSINSALQFFNQIRDEV 514
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
++ W +II G A HG +E F MQ+ +KPN +TF+ VL+AC H GL
Sbjct: 515 SSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRI 574
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC++D+LGRAG LE+AE++ +P E D+V+ LL AC H
Sbjct: 575 FKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPME-ADIVIWGTLLAACRTH 633
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
GNV +GER + + +GG VL+ NI A G++ + +R VM + + PG S
Sbjct: 634 GNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 65/332 (19%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
+H ++ K+ V V+T L++ Y ++++ +LFDE+PERNLVTWNVM+ G K G
Sbjct: 207 VHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGL 266
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
++ AR LF+ + ++V+SW ++DGY + R A P+E+ I+ ++ A
Sbjct: 267 VDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSA 326
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG-----CIF----------- 243
+ A+ + +HG KRGF+ ++ + +I YA CG C+
Sbjct: 327 CGRGTAIVDGWQLHGTVVKRGFDCYNF-IQTTIIYFYAACGMMDLACLQFEVGVKDHLES 385
Query: 244 ---------------SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
ALK F+ + V +++ SW+++ISG+A K A+E F +M
Sbjct: 386 WNALTAGFIKNGMMDHALKTFDKMHV--RDVFSWSTMISGYAQSEHPKMALELFHKMLAG 443
Query: 289 GLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQA 327
G+KPN VT +SV +A + G L G L+DM + G + A
Sbjct: 444 GIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSA 503
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
+ I E++ V ++ + HG+ M
Sbjct: 504 LQFFNQIRDEVSSVSPWNAIICGLASHGHASM 535
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 141/275 (51%), Gaps = 46/275 (16%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+++C +LS+ + G Q+H++I K+G + ++ +L+NMY G +K++ LFD +
Sbjct: 60 LKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDS 119
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSN 182
V+ N+M++G V+ G+++ AR LF+ MP + VS+T ++ G+ + RS
Sbjct: 120 VSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSC 179
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGY------------------------GEK 218
G P+++T++ V+ A G V NC+++HG G +
Sbjct: 180 GVV--PNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVR 237
Query: 219 RGFNAFD------IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
FD + N +++ YAK G + A +LF+ I K+++SW ++I G+
Sbjct: 238 EARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGIC--DKDVISWGTMIDGYIQK 295
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
G + A+E + M + G PN V +++++AC G
Sbjct: 296 GRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRG 330
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 184/344 (53%), Gaps = 45/344 (13%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ Y+ G + ++ KLF E+P R+++ WN ++ G G +E LFEEMP RN+ SW
Sbjct: 81 MVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSW 140
Query: 169 TGILDGYTRMNRSNG---------------ASTEPSEITILAVLPAIWQNGAVRNCQLIH 213
++ GY NG + P++ T++ VL A + GA+ + +H
Sbjct: 141 NALIGGYAH----NGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 196
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
Y E G ++ V N L+D YAKCG I +A+ +F ++ K+L+SW ++I G AMH
Sbjct: 197 VYAESSGLKG-NVYVGNALMDMYAKCGIIENAISVFR--GMDTKDLISWNTLIGGLAMHS 253
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
G A+ F +M+ G KP+ +TF+ +L AC+H GL HY
Sbjct: 254 RGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHY 313
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VDML RAGRLEQA +P E D V+ LLGAC + NVE+ E ++++E+E
Sbjct: 314 GCMVDMLARAGRLEQAMAFVRKMPVE-ADGVIWAGLLGACRIYKNVELAELALQRLIELE 372
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N +YV++ NI GR+ D RL+ M + K PG SL+
Sbjct: 373 PKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLI 416
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 38/260 (14%)
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ +LFD++P+ N+ WN M G + + E R +F EM RNVV+WT +++GY
Sbjct: 4 ARQLFDQIPDPNIALWNSMFRG---YAQSESYREIFCEMFERNVVAWTSMINGYIL---- 56
Query: 182 NGASTEPSEITILA-----VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ + LA VL I +G + ++ D+ N ++ Y
Sbjct: 57 SADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGY 116
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRV 295
A G + + LFE++ +N+ SW ++I G+A +G+ + +F+RM + + PN
Sbjct: 117 ATNGNVEALEGLFEEMP--ERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDA 174
Query: 296 TFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T ++VL+AC+ G L G L+DM + G +E A + G+
Sbjct: 175 TLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 234
Query: 335 PSEITDVVVRRILLGACSFH 354
++ D++ L+G + H
Sbjct: 235 DTK--DLISWNTLIGGLAMH 252
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 110/288 (38%), Gaps = 61/288 (21%)
Query: 58 SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
S S + P + T ++ C L +LG +H G + +VYV AL++MY G
Sbjct: 165 SESDVPP--NDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCG 222
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
++++ +F + ++L++WN +I GL A +LF +M
Sbjct: 223 IIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQM----------------- 265
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-----------DI 226
A +P IT + +L A G V + GF F I
Sbjct: 266 ----KNAGQKPDGITFIGILCACTHMGLVED-----------GFAYFQSMADDYLIMPQI 310
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
C++D A+ G + A+ + VE ++ W ++ A ++ ++
Sbjct: 311 EHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVI-WAGLL----------GACRIYKNVE 359
Query: 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334
L R+ L N +Y L ++ G AGR E ++ + +
Sbjct: 360 LAELALQRLIELEPKNPA-----NYVMLSNIYGDAGRWEDVARLKVAM 402
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 133/385 (34%), Positives = 199/385 (51%), Gaps = 40/385 (10%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D++ + +++ CV G ++H ++ K G + LV +Y G L+D+ K
Sbjct: 122 LADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARK 181
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD +PER++V VMI G +E A +F EM R+ V WT ++DG R N
Sbjct: 182 MFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRG 241
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCL 232
EP+E+T + VL A Q GA+ + IH Y K G N F V+ L
Sbjct: 242 LEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRF---VAGAL 298
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
I+ Y++CG I A LF+ + V K++ ++ S+I G A+HG AVE F M K ++P
Sbjct: 299 INMYSRCGDIDEAQALFDGVRV--KDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRP 356
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
N +TF+ VLNACSHGGL HYGC+VD+LGR GRLE+A
Sbjct: 357 NGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDF 416
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+ E D ++ LL AC H N+ MGE+V + + E R + G ++++ N A +GR
Sbjct: 417 IGRMGVEADDKMLCS-LLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGR 475
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+ A +R M++ +K PG S +
Sbjct: 476 WSYAAEVREKMEKGGIIKEPGCSSI 500
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 210/453 (46%), Gaps = 113/453 (24%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY------------- 113
D++T F+++ C G ++H K+G S VYV+ L+ MY
Sbjct: 124 DNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF 183
Query: 114 ------------------VSLGFLKDSSKLFDELPERNL--------------------- 134
V +GF ++ LF E+ NL
Sbjct: 184 DTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLR 243
Query: 135 -------------------VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG- 174
N ++ +K G+ +AR +F+EMP +NVVSW ++ G
Sbjct: 244 LGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGL 303
Query: 175 ------------YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
+ +M R +P ++T++AVL + G + + +H Y ++
Sbjct: 304 AQKGQFKESLYMFRKMQR---LGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 360
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
A D + N L+D YAKCG I A +F+ ++ RK++ S+T++I G AMHG G A++ F
Sbjct: 361 A-DGFIGNALVDMYAKCGSIDQACWVFQ--AMNRKDVYSYTAMIVGLAMHGQGGKALDLF 417
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
M K+G++P+ VTF+ VL ACSH GL HYGC+VD+LGR
Sbjct: 418 SEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGR 477
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG + +AE+ +P E D V LLGAC HG VE+GE V +K+ ++E G YVL
Sbjct: 478 AGLINEAEEFIRNMPIE-PDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVL 536
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
M NI + R+ DA +LR+ M ERN K PG S
Sbjct: 537 MSNIYSSANRWRDALKLRKTMKERNLEKTPGCS 569
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE--------------PSEITILAVL 197
YA SL ++ N+ + I+ G + SN S E P TI VL
Sbjct: 76 YALSLLAQLRTPNLPLYNAIIRG---LATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVL 132
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A ++ AVR + +HG K G A D+ VSN L+ YA C I SA K+F D S +R
Sbjct: 133 KACAESRAVREGEEVHGQAIKMGL-ASDVYVSNTLMRMYAVCDVIRSARKVF-DTSPQR- 189
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
+LVSWT++I G+ G + V F M L+ + +T + VL++C+ G
Sbjct: 190 DLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLG 240
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 222/443 (50%), Gaps = 71/443 (16%)
Query: 15 LLTTNSLLHHTL-LFNTLLHFYSLADSPKKAFLLYKQLQQI-----------------YT 56
L+TTNS+L++ L + N LL+ Y A+ L+ ++ Q +
Sbjct: 1104 LITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFM 1163
Query: 57 HSHSPLRPLF------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110
+ + L D++T F+I+ C ++G +H V+ K G +V ALV
Sbjct: 1164 QCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALV 1223
Query: 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+MY ++D+ LFD +P ++LVTW VMI G + G + + LF+ + V
Sbjct: 1224 DMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFV---- 1279
Query: 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
P +I +++++ A + GA+ + +H Y + F + D+ +
Sbjct: 1280 -----------------PDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRF-SLDVILGT 1321
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
+ID YAKCG + SA ++F+++ KN++SW+++I+ + HG GK A+E F M G+
Sbjct: 1322 AMIDMYAKCGDVDSAREIFDNM--HHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGI 1379
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
PN +TF+S+L ACSH GL H+ C+VD+LGRAG+L +A
Sbjct: 1380 LPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAF 1439
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ + E D + LLGAC H +++ E+ + +LE++ N G+Y+L+ NI A
Sbjct: 1440 RFIENMTVE-KDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYANA 1498
Query: 389 GRYVDAERLRRVMDERNALKFPG 411
G++ D ++R +M +R K PG
Sbjct: 1499 GQWKDVAKIRDLMTKRKLKKIPG 1521
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 208/395 (52%), Gaps = 54/395 (13%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
R D + L C L Q H V K+G + V V AL++MY G + +
Sbjct: 106 RVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEV 165
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
++F+EL E+++V+W V++ +VKW LE R +F EMP RN V+WT ++ GY
Sbjct: 166 KRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYL----GA 221
Query: 183 GASTEPSE---------------ITILAVLPAIWQNGAVRNCQLIHGY--------GEKR 219
G + E E +T+ ++L A Q+G + + +H Y GE+
Sbjct: 222 GFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEA 281
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
++ D+ V L+D YAKCG I S++ +F + ++N+V+W ++ SG AMHG G+ +
Sbjct: 282 SYD--DVMVGTALVDMYAKCGNIDSSMNVFR--LMRKRNVVTWNALFSGLAMHGKGRMVI 337
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDML 318
+ F +M + +KP+ +TF +VL+ACSH G+ HY C+VD+L
Sbjct: 338 DMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLL 396
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRAG +E+AE + +P +VV+ LLG+CS HG VE+ ER+ R++++M GN
Sbjct: 397 GRAGLIEEAEILMREMPVPPNEVVLGS-LLGSCSVHGKVEIAERIKRELIQMSPGNTEYQ 455
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+LM N+ GR A+ LR + +R K PG S
Sbjct: 456 ILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLS 490
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 56/270 (20%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQS--HVYVNTALVNMYVSLGFLKDSSKLFDELP 130
L+R C S+ G +LHAV++ G + Y++ AL Y S G + + KLFDE+P
Sbjct: 11 LLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIP 70
Query: 131 --ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
E++ V W +++ ++G L + LF EM + V E
Sbjct: 71 LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRV---------------------EI 109
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+++++ + + + Q HG K G ++V N L+D Y KCG + ++
Sbjct: 110 DDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLT-SVKVCNALMDMYGKCGLVSEVKRI 168
Query: 249 FEDIS-------------------VER----------KNLVSWTSIISGFAMHGMGKAAV 279
FE++ +ER +N V+WT +++G+ G + +
Sbjct: 169 FEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVL 228
Query: 280 ENFERMQ-KVGLKPNRVTFLSVLNACSHGG 308
E M + G N VT S+L+AC+ G
Sbjct: 229 ELLAEMVFRCGHGLNFVTLCSMLSACAQSG 258
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+SN L YA G + +A KLF++I + K+ V WT+++S F+ +G+ +++ F M++
Sbjct: 45 LSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRR 104
Query: 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
++ + V+ + + C+ L G +Q +A+ + +T V V L
Sbjct: 105 KRVEIDDVSVVCLFGVCAK-----------LEDLGFAQQGHGVAVKM-GVLTSVKVCNAL 152
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV---MDER 404
+ +G + V R E+E + + + +L V ++ ER R V M ER
Sbjct: 153 M---DMYGKCGLVSEVKRIFEELEEKSVVSWTV---VLDTVVKWEGLERGREVFHEMPER 206
Query: 405 NALKF 409
NA+ +
Sbjct: 207 NAVAW 211
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 193/360 (53%), Gaps = 38/360 (10%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL--VTWNVMITGLVKWG 148
H K G +H V L+ +Y +LG L D+ ++FD +L +WN M++G K G
Sbjct: 139 HGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCG 198
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLP 198
+LE AR +F MP R +VSW+ ++D R ++ G P + + +VL
Sbjct: 199 DLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLK 258
Query: 199 AIWQNGAVRNCQLIHGY--GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
A GA+ + +H + E G + ++ + L+D Y KCGC+ A +F+ V+
Sbjct: 259 ACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFD--GVQS 316
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++V W ++I G AM+G GK A+E F RM +G PN TF+ VL AC+H G
Sbjct: 317 QDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEI 376
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGCL D+LGRAG LE+AE + L +P E L+ +C H
Sbjct: 377 FRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPME-PHASQWGALMSSCLMHN 435
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NV +GERV +K++E+E +GG YV+++N+ A G + DA+ LR++M+ER A K G S +
Sbjct: 436 NVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFI 495
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 216/409 (52%), Gaps = 51/409 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ +L+ P A Y+ + S+ R D+ T SF ++ C +
Sbjct: 69 WNAVIRGTALSSDPANAVFWYRAM----AASNGLHR--IDALTCSFALKACARALARSEA 122
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLH+ + + GF + V + T L++ Y +G L + KLFDE+P+ ++ +WN +I G +
Sbjct: 123 IQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQG 182
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
A F+ M +DG R P+ +T+ L A Q GA++
Sbjct: 183 SRPADAIMTFKRMK----------VDGNLR----------PNAVTVQGALLACSQLGALK 222
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H Y + ++ +++V N +ID YAKCG + A +FE++ + K+L++W ++I
Sbjct: 223 EGESVHKYIVEEKLDS-NVQVCNVVIDMYAKCGSMDKAYWVFENMRCD-KSLITWNTMIM 280
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
FAMHG G A++ FE++ + G+ P+ V++L+VL AC+H GL
Sbjct: 281 AFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEP 340
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYG +VD+LGRAGRL++A I +P ++V+ + LLGAC +G+VEM E +RK
Sbjct: 341 NIKHYGSMVDLLGRAGRLKEAYDIVSSLP--FPNMVLWQTLLGACRTYGDVEMAELASRK 398
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++EM + G +VL+ N+ A R+ D R+R M R+ K PG S +
Sbjct: 399 LVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYI 447
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG-------------YTRMNRSNGASTE 187
+ + +G+L YA +F +P + W ++ G Y M SNG
Sbjct: 42 LCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLH-R 100
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
+T L A + A +H + GFNA D+ + L+D YAK G + A K
Sbjct: 101 IDALTCSFALKACARALARSEAIQLHSQLLRFGFNA-DVLLQTTLLDAYAKIGDLDLAQK 159
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH 306
LF+++ + ++ SW ++I+GFA A+ F+RM+ G L+PN VT L ACS
Sbjct: 160 LFDEMP--QPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQ 217
Query: 307 GG 308
G
Sbjct: 218 LG 219
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 201/370 (54%), Gaps = 46/370 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DS T++ ++ C + LG + ++I + GF+S +++ ALV+M+V+ G L + LF
Sbjct: 507 DSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLF 566
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+++PER+LV+WN +I G V+ GE ++A F+ M +
Sbjct: 567 NDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMM---------------------QESGV 605
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P +IT +L A A+ + +H + + D+ V LI Y KCG I A
Sbjct: 606 KPDQITFTGLLNACASPEALTEGRRLHALITEAALDC-DVVVGTGLISMYTKCGSIDDAH 664
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F ++ +KN+ SWTS+I+G+A HG GK A+E F +MQ+ G+KP+ +TF+ L+AC+H
Sbjct: 665 LVFHNLP--KKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAH 722
Query: 307 GGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+VD+ GRAG L +A + + + D +
Sbjct: 723 AGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVK-PDSRLWG 781
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LLGAC H +VE+ E+V +K LE++ + G YV++ NI A G + + ++R+VM +R
Sbjct: 782 ALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRG 841
Query: 406 ALKFPGRSLV 415
+K PG+S +
Sbjct: 842 VVKKPGQSWI 851
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 165/323 (51%), Gaps = 48/323 (14%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL Y ++AF L++Q+ Q ++P D +T+ +++ C + G
Sbjct: 173 WNLLLGGYVQHRRYEEAFRLHEQMVQ------DGVKP--DKYTFVYMLNACADAKNVDKG 224
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+L ++I G+ + ++V TAL+NM++ G + D+ K+F+ LP R+L+TW MITGL +
Sbjct: 225 GELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARH 284
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ + A +LF+ M V +P ++ +++L A A+
Sbjct: 285 RQFKQACNLFQVMEEEGV---------------------QPDKVAFVSLLKACNHPEALE 323
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H ++ G + +I V L+ Y KCG + AL++F V+ +N+VSWT++I+
Sbjct: 324 QGKRVHARMKEVGLDT-EIYVGTALLSMYTKCGSMEDALEVFN--LVKGRNVVSWTAMIA 380
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327
GFA HG + A F +M + G++PNRVTF+S+L ACS R L+Q
Sbjct: 381 GFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACS--------------RPSALKQG 426
Query: 328 EKIALGI--PSEITDVVVRRILL 348
+I I ITD VR LL
Sbjct: 427 RQIHDRIIKAGYITDDRVRTALL 449
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 32/264 (12%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
++AFL + ++ + S + P + T+ ++ C S G Q+H I K G+ +
Sbjct: 389 EEAFLFFNKMIE------SGIEP--NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYIT 440
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
V TAL++MY G L D+ +F+ + ++N+V WN MIT V+ + + A + F+ +
Sbjct: 441 DDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALL 500
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+ +P T ++L A+ + + + GF
Sbjct: 501 KEGI---------------------KPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGF 539
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
+ D+ + N L+ + CG + SA+ LF D+ ++LVSW +II+GF HG + A +
Sbjct: 540 ES-DLHIRNALVSMFVNCGDLMSAMNLFNDMP--ERDLVSWNTIIAGFVQHGENQFAFDY 596
Query: 282 FERMQKVGLKPNRVTFLSVLNACS 305
F+ MQ+ G+KP+++TF +LNAC+
Sbjct: 597 FKMMQESGVKPDQITFTGLLNACA 620
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 24/237 (10%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
TYS L++ C+ G ++H I Q +++ L++MY G + ++FDE+
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P++++ +WN+++ G V+ E A L E+M + DG +P
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQM----------VQDG-----------VKPD 204
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ T + +L A V + G++ D+ V LI+ + KCG + ALK+F
Sbjct: 205 KYTFVYMLNACADAKNVDKGGELFSLILNAGWDT-DLFVGTALINMHIKCGGVDDALKVF 263
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++ R++L++WTS+I+G A H K A F+ M++ G++P++V F+S+L AC+H
Sbjct: 264 NNLP--RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNH 318
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 220/422 (52%), Gaps = 55/422 (13%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
L N+ ++ ++NTL+ ++ + +P +A LLY +++ L + T+ FL+
Sbjct: 82 LFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRR--------LDVIPGKHTFPFLL 133
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+ C Q+H + K G +++V LV Y ++++ ++FDE+ ER+L
Sbjct: 134 KACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLS 193
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
W MI+G + A LF++M I++G EP+ T+ +
Sbjct: 194 IWTTMISGYAQNYCSNEALELFDQM----------IVEGL-----------EPNGATLAS 232
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q+G + + IH + E++G + + L+ YAK G I A KLF+ IS
Sbjct: 233 VLSACAQSGCLDLGERIHVFMEEKGIEV-GVILGTALVHMYAKNGAILMAQKLFDTIS-- 289
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
+N +W ++I G A+HG K A++ F +++K + PN +TF+ VL+AC H GL
Sbjct: 290 ERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRK 349
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR G L +AE++ G+ + DVV+ LLG+C
Sbjct: 350 IFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWK-ADVVILGALLGSCKN 408
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN+E+ ERV +++L +E N G YV++ N+ A GR+ D RLR+VM N K PG S
Sbjct: 409 HGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWS 468
Query: 414 LV 415
LV
Sbjct: 469 LV 470
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + +LF+ E N WN +I A L+ +M +V+
Sbjct: 74 GDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVI---------- 123
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P + T +L A ++++C +H + K G + ++ V N L+ Y
Sbjct: 124 -----------PGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLD-LNLHVVNGLVRAY 171
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+ + +A ++F+++S ++L WT++ISG+A + A+E F++M GL+PN T
Sbjct: 172 SVSCDVRNARRVFDEVS--ERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGAT 229
Query: 297 FLSVLNACSHGG 308
SVL+AC+ G
Sbjct: 230 LASVLSACAQSG 241
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/425 (32%), Positives = 215/425 (50%), Gaps = 48/425 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ Y +A ++ ++ S L P D T + ++ C +L G
Sbjct: 216 WNSLITCYEQNGPASEALEVFVRMMD------SGLEP--DEVTLASVVSACASLCALKEG 267
Query: 88 TQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+HA + K F+ + + ALV+MY + ++ ++FD + RN+V+ M++G +
Sbjct: 268 LQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYAR 327
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
++ AR +F +M RNVVSW ++ GYT+ + A S P+ T +
Sbjct: 328 AASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNL 387
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFN-----AFDIRVSNCLIDTYAKCGCIFSALKLFED 251
L A + + H + K+GF DI V N LID Y KCG I ++FE
Sbjct: 388 LSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEK 447
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ + ++ VSW +II G+A +G G A++ F +M G KP+ VT + VL ACSH GL
Sbjct: 448 M--KERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVE 505
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HY C+VD+LGRAG L +A+ + +P D VV LL A
Sbjct: 506 EGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVN-PDAVVWGSLLAA 564
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C HGN+EMG+ K+LE++ N G YVL+ N+ A +GR+ D R+R++M ++ K P
Sbjct: 565 CKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQP 624
Query: 411 GRSLV 415
G S +
Sbjct: 625 GCSWI 629
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 133/269 (49%), Gaps = 30/269 (11%)
Query: 51 LQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQL-HAVISKVGFQSHVYVNTAL 109
++ +Y + SP L DS S R GT+L HA I F +++ L
Sbjct: 7 VRDLYLPNSSPFAKLLDSCLRSRSAR----------GTRLVHARILMTQFSMEIFIQNRL 56
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
+++Y L D+ KLFD +P+RN TWN +I+ L K G L+ A LF MP + SW
Sbjct: 57 IDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWN 116
Query: 170 GILDGYT-------------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
++ G+ +M+R + E S + L+ + + +H
Sbjct: 117 SMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMD---LNMGTQVHALV 173
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
K ++ D+ + + LID Y+KCG + A ++F + +ER NLV+W S+I+ + +G
Sbjct: 174 SKSRYST-DVYMGSALIDMYSKCGSVACAEEVFSGM-IER-NLVTWNSLITCYEQNGPAS 230
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACS 305
A+E F RM GL+P+ VT SV++AC+
Sbjct: 231 EALEVFVRMMDSGLEPDEVTLASVVSACA 259
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 157/340 (46%), Gaps = 64/340 (18%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L + +++ + C L N+GTQ+HA++SK + + VY+ +AL++MY G + + +
Sbjct: 144 LLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEE 203
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F + ERNLVTWN +IT + G A L+ + RM S
Sbjct: 204 VFSGMIERNLVTWNSLITCYEQNGPASEA------------------LEVFVRMMDSG-- 243
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E+T+ +V+ A A++ IH K D+ + N L+D YAKC +
Sbjct: 244 -LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNE 302
Query: 245 ALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMG 275
A ++F+ +S+ ++N+VSW ++I+G+ +G
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD-MLGRAGR---LEQAEKIA 331
+ A+ F +++ + P TF ++L+AC++ L D +LGR L+Q +
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLSACAN-------LADLLLGRQAHTHVLKQGFEFQ 415
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
G S D+ V L+ G++E G RV K+ E +
Sbjct: 416 SGAES---DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERD 452
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 196/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG LH K+G ++HV V TA++ MY G + + +FD + E+N VTWN MI G
Sbjct: 34 LGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGY 93
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G+++ A LF+EMP R+++SWT +++G+ + A +P + I+
Sbjct: 94 MRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAII 153
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ IH Y + F ++RVSN LID Y +CGC+ A ++F+ +
Sbjct: 154 AALAACTNLGALSFGLWIHRYVVSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFDKM-- 210
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G KPN VTF L AC+H GL
Sbjct: 211 EKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGL 270
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE A K+ +P + +VV+ LL AC
Sbjct: 271 RYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGS-LLAACR 329
Query: 353 FHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
G N + ERV + + ++ + +YV++ N+ A G++ A ++RR M K PG
Sbjct: 330 TQGNNTVLAERVMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKEPG 389
Query: 412 RSLV 415
S +
Sbjct: 390 FSSI 393
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 53/274 (19%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L + G +H + F+++V V+ +L+++Y G ++ + ++FD++ +R +
Sbjct: 156 LAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 215
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN +I G G + F +M +G+ +P+ +T
Sbjct: 216 VSWNSVIVGFAANGHAHESLVYFRKMQ----------EEGF-----------KPNAVTFT 254
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS------NCLIDTYAKCGCIFSALKL 248
L A G V L + KR D R+S CL+D Y++ G + ALK+
Sbjct: 255 GALAACNHVGLVEE-GLRYFQSMKR-----DYRISPRIEHYGCLVDLYSRAGRLEDALKV 308
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
+ + + + N V S+++ G ER+ K LS LN SH
Sbjct: 309 VQSMPM-KPNEVVIGSLLAACRTQGNNTVLA---ERVMK---------HLSDLNVKSHS- 354
Query: 309 LHYGCLVDMLGRAGRLEQAEKI-----ALGIPSE 337
+Y L +M G+ E A K+ LG+ E
Sbjct: 355 -NYVILSNMYAADGKWEGASKMRRKMKGLGLKKE 387
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 220/422 (52%), Gaps = 55/422 (13%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
L N+ ++ ++NTL+ ++ + +P +A LLY +++ L + T+ FL+
Sbjct: 84 LFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRR--------LDVIPGKHTFPFLL 135
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+ C Q+H + K G +++V LV Y ++++ ++FDE+ ER+L
Sbjct: 136 KACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLS 195
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
W MI+G + A LF++M I++G EP+ T+ +
Sbjct: 196 IWTTMISGYAQNYCSNEALELFDQM----------IVEGL-----------EPNGATLAS 234
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q+G + + IH + E++G + + L+ YAK G I A KLF+ IS
Sbjct: 235 VLSACAQSGCLDLGERIHVFMEEKGIEV-GVILGTALVHMYAKNGAILMAQKLFDXIS-- 291
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
+N +W ++I G A+HG K A++ F +++K + PN +TF+ VL+AC H GL
Sbjct: 292 ERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRK 351
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+LGR G L +AE++ G+ + DVV+ LLG+C
Sbjct: 352 IFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWK-ADVVILGALLGSCKN 410
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN+E+ ERV +++L +E N G YV++ N+ A GR+ D RLR+VM N K PG S
Sbjct: 411 HGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWS 470
Query: 414 LV 415
LV
Sbjct: 471 LV 472
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + +LF+ E N WN +I A L+ +M +V+
Sbjct: 76 GDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVI---------- 125
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P + T +L A ++++C +H + K G + ++ V N L+ Y
Sbjct: 126 -----------PGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLD-LNLHVVNGLVRAY 173
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+ + +A ++F+++S ++L WT++ISG+A + A+E F++M GL+PN T
Sbjct: 174 SVSCDVRNARRVFDEVS--ERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGAT 231
Query: 297 FLSVLNACSHGG 308
SVL+AC+ G
Sbjct: 232 LASVLSACAQSG 243
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 209/423 (49%), Gaps = 49/423 (11%)
Query: 40 SPKKAFLLYKQLQQIYTHS-----HSPLRPLFDSFTYSFLIRTCVTLSYP-------NLG 87
+P + Y I+ HS H+ L L + L+ T TLS +G
Sbjct: 88 TPDPTAVFYTS--AIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGGLAVG 145
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL-PERNLVTWNVMITGLVK 146
LH K+ YV TAL+ MY G + LFD + P+ ++V+ M+T K
Sbjct: 146 RALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAK 205
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
G L+ ARSLF+ +P ++++ W ++DGYT+ R + A EP E++++
Sbjct: 206 MGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLA 265
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNA--FDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A+ Q G + + +H + + RV LID Y KCG + A+ +F D+
Sbjct: 266 LSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGA 325
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+++V+W ++++G+AMHG + A+ F +++ GL P +TF+ VLNACSH GL
Sbjct: 326 GDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGR 385
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAGR+E+A ++ + D V+ LL AC
Sbjct: 386 ELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACR 445
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H N+E+G+R+ ++ N G YVL+ N+ A G + + R+R +M K PG
Sbjct: 446 LHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGC 505
Query: 413 SLV 415
S V
Sbjct: 506 SAV 508
>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
Length = 655
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 212/417 (50%), Gaps = 43/417 (10%)
Query: 30 TLLHFYSLADSPKKAFLLYKQL-QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
TL+ Y AD A Y Q+ ++ + H L L D L++ C S G
Sbjct: 246 TLIDGYICADLISDAMKAYVQMVGEVGANDHEVL--LVD------LMKACARYSAITEGQ 297
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
QLH VI K GF +H +V LV+ Y G + + F + + +WN ++ L++ G
Sbjct: 298 QLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMAFKLSDKSHTASWNALLAALLRKG 357
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLP 198
+ AR LF++MP R+ VSW+ ++ GY + RS+ A S EP+E+T+ + L
Sbjct: 358 LIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYSMLNTSVEPNEVTLASALS 417
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
AI +G + + IH + R D +S LID YAK G + A++ F S + +
Sbjct: 418 AIADSGTLDQGKWIHDHIMNRPIQLTD-NLSAGLIDMYAKRGSVADAVQFFNCASDKFSS 476
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+ W ++I A+HG +++ F ++Q+ +KPN +TF+ VL+AC H G+
Sbjct: 477 VSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHTGMVAKGKYYFE 536
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+LGRAG LE+AE++ +P + DVV+ +L A GN
Sbjct: 537 AMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK-ADVVIWGSILSAARAQGN 595
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ +GE+ ++ ++++ +G V + NI A G + + +R+ + + N + GRS
Sbjct: 596 IALGEKAAEELAKLDQTHGASKVALSNIYADAGHWTNVSVVRKELQDENFERLVGRS 652
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 113/269 (42%), Gaps = 49/269 (18%)
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
P +H K V V T LV+ Y + L + +FD + RN VTWN M+ G
Sbjct: 160 PATVGMIHGFALKRALDGFVIVATNLVHAYAGVLELYSARAMFDGMTHRNAVTWNAMLNG 219
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDG-------------YTRMNRSNGASTEPSE 190
VK ++ A +F +P R+ VSW ++DG Y +M GA+ E
Sbjct: 220 YVKAEMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDH--E 277
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC----------- 239
+ ++ ++ A + A+ Q +H K GF+A V L+ Y C
Sbjct: 278 VLLVDLMKACARYSAITEGQQLHTVILKNGFDAHAF-VQATLVHFYGCCGLIGLAQMAFK 336
Query: 240 --------------------GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
G I A +LF+D+ ++ VSW+++ISG+ G A+
Sbjct: 337 LSDKSHTASWNALLAALLRKGLIHEARELFDDM--PERDTVSWSTMISGYVQTGRSDMAL 394
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSHGG 308
E F M ++PN VT S L+A + G
Sbjct: 395 ELFYSMLNTSVEPNEVTLASALSAIADSG 423
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 128/259 (49%), Gaps = 31/259 (11%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSL-G 117
+PL P FL+ + + G QLHA+ +K G + + +V ++++ Y L
Sbjct: 6 NPLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLACNAFVRNSVLSFYSRLPS 57
Query: 118 FLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILD 173
L + +LFDE P R+ N ++ L + G L+ A+ L +EMP R+ VS+T ++
Sbjct: 58 SLASALQLFDETPAPLRDTAARNSVLAALTRAGHLDRAQRLLDEMPRVHRDAVSYTTLVT 117
Query: 174 GYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
R + A + P+E+T+ + A + GA +IHG+ KR +
Sbjct: 118 ALARAGHAGRAVAVFRGMLSENVVPNEVTLAGAIMAFARCGAPATVGMIHGFALKRALDG 177
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
F I +N L+ YA ++SA +F+ ++ +N V+W ++++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELYSARAMFDGMT--HRNAVTWNAMLNGYVKAEMIDMAAEVFW 234
Query: 284 RMQKVGLKPNRVTFLSVLN 302
R+ + + V++L++++
Sbjct: 235 RIP----ERDEVSWLTLID 249
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 150/508 (29%), Positives = 226/508 (44%), Gaps = 111/508 (21%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAF-LLYKQLQQIYTHSHSP 61
+S + +T I + LL + T L+N LL +S F L Y+ Q Y
Sbjct: 52 TSVSYSTSIFNRLLNPS-----TFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYA----- 101
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN--------------- 106
L D +TY LI+ C G +H + G VYV
Sbjct: 102 ---LSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILS 158
Query: 107 ----------------TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL------ 144
TA+V Y S+G L+++ ++F+ +PERNL +WN MI+GL
Sbjct: 159 ARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDL 218
Query: 145 -------------------------VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
K G++ AR+LF+E P ++VV+W+ ++ GY+R
Sbjct: 219 SGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNE 278
Query: 180 RSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
+ N A + +P E +++++ A Q G + + Y + + V
Sbjct: 279 QPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVL 338
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
LID +AKCG + A+KLF+D+ ++L+ S+I G ++HG G AVE F RM G
Sbjct: 339 AALIDMHAKCGNMEKAVKLFQDMP--SRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEG 396
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
L P+ V F +L ACS GGL HY C+VD+L RAG+L A
Sbjct: 397 LIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAA 456
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ +P + LLGAC HG+VE+ E V ++LE+E G YVL+ NI A
Sbjct: 457 YDLLKSMPLK-PHACAWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYAS 515
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
+++D +R M ER K PG S +
Sbjct: 516 ANQWLDVSIVRDEMKERGIRKIPGCSYI 543
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 205/413 (49%), Gaps = 90/413 (21%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++N+ L + DSP A +L+ +L+Q + P D+FT S ++R C+ L
Sbjct: 126 TFVWNSCLKALAEGDSPIDAIMLFYRLRQ---YDVCP-----DTFTCSSVLRACLNLLDL 177
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+ G LH V+ KVGF+S W MI G
Sbjct: 178 SNGRILHGVVEKVGFRS-----------------------------------WTSMIAGY 202
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
V+ G+ + A LF +M A + +E+T++AVL A G
Sbjct: 203 VQCGKAKEAIHLFAKM---------------------EEAGVKCNEVTVVAVLAACADLG 241
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ IH Y + GF ++R+SN LID Y KCGC+ A K+FE++ E + +VSW++
Sbjct: 242 ALDLGMRIHEYSNRHGFKR-NVRISNTLIDMYVKCGCLEEACKVFEEM--EERTVVSWSA 298
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I G AMHG + A+ F M +VG++PN VTF+ +L+ACSH GL
Sbjct: 299 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 358
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+VD+L RAG L +A + L +P + + VV LLGAC H NVEM E
Sbjct: 359 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMK-PNGVVWGALLGACRVHKNVEMAEE 417
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +LE++ N G YV++ NI A GR+ D R+R+ M +R K PG S +
Sbjct: 418 AIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 470
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 204/381 (53%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D ++ CV L +LG +HA I G ++ AL+++Y G L ++ + F
Sbjct: 367 DEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTF 426
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------- 179
++LP ++ +WN M+ G + G ++ AR F ++P +++VSW +++ Y + +
Sbjct: 427 EQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFE 486
Query: 180 ---RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ ++ +P + T++++L + + GA+ + ++ Y EK D + LID Y
Sbjct: 487 IFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEI-GIDAMLGTALIDMY 545
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCGC+ A ++F I KN+ WT++++ +AM G A++ + M++ G+KP+ VT
Sbjct: 546 GKCGCVEMAYEIFTQII--EKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVT 603
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+++L ACSHGGL HYGC+VD+LGR G LE+ K +
Sbjct: 604 FIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERM 663
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E DV + L+ AC H NVE+ E+ ++++E++ N G +VL+ NI A GR+ D
Sbjct: 664 PIE-PDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDV 722
Query: 395 ERLRRVMDERNALKFPGRSLV 415
++R + E K PG +++
Sbjct: 723 SKVRTKLHETGVPKQPGFTMI 743
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 175/395 (44%), Gaps = 84/395 (21%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP--------- 61
IH+HL+T N L+H + + +L F ++ A QI ++SH P
Sbjct: 54 IHAHLITAN-LIHDPEITSQVLAFLLSVNNLDCA-------HQILSYSHEPESIIWNTLL 105
Query: 62 ---LRP------------------LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
L+ L D T+ FLI C LG+++H I K GF
Sbjct: 106 ENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFG 165
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
+ +N L+ +Y G LK+ +LF+++ R++++WN MI+ V G A LF+EM
Sbjct: 166 RNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM 225
Query: 161 PCRNVVSWTGILDGYTRMNR--SNGASTEPSE----ITILAVLPAIWQNGAVRNCQL--- 211
+VS G+L M S A + E + + V +W G++ NC +
Sbjct: 226 ----LVS--GVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMY 279
Query: 212 --------IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
HG + + D+ + L+ Y K I A +LF+ ++ ++LVSWT
Sbjct: 280 SKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN--ERSLVSWT 337
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-------GGLH-----Y 311
+++SG+ G ++E F++M+ + P+ V ++VL+AC H +H Y
Sbjct: 338 TMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTY 397
Query: 312 GCLV---------DMLGRAGRLEQAEKIALGIPSE 337
G LV D+ + G+L++A + +P +
Sbjct: 398 GMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK 432
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
++ A +N V+ +HG K GF + ++N L+ Y+KCG + +LFE ++
Sbjct: 139 LIHACCKNFDVKLGSEVHGRILKCGFGR-NKSLNNNLMGLYSKCGKLKEVCQLFEKMT-- 195
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH--------- 306
++++SW ++IS + + GM + A++ F+ M G+ P+ +T +S+++ C+
Sbjct: 196 HRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKR 255
Query: 307 ------------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
G CLVDM + G++++A + DVV+ L+
Sbjct: 256 LHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSG 311
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 127/320 (39%), Gaps = 60/320 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT+++ Y D ++F ++ ++Q S ++P D T L+ +C + N G
Sbjct: 468 WNTMVNAYVKHDLFNESFEIFCKMQS------SNVKP--DKTTLISLLSSCAKVGALNHG 519
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++ I K + TAL++MY G ++ + ++F ++ E+N+ W M+
Sbjct: 520 IWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAME 579
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ A L+ EM R V +P +T +A+L A G V
Sbjct: 580 GQALEAIDLYLEMEERGV---------------------KPDHVTFIALLAACSHGGLVD 618
Query: 208 NCQLIHGYGEKRGFNAF-----DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
GY +F I C++D + G + +K E + +E ++ W
Sbjct: 619 E-----GYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIE-PDVSIW 672
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG 322
+S++ H + A + F+++ ++ N L L ++ AG
Sbjct: 673 SSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVL---------------LSNIYADAG 717
Query: 323 RLEQAEKI-----ALGIPSE 337
R + K+ G+P +
Sbjct: 718 RWDDVSKVRTKLHETGVPKQ 737
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/478 (30%), Positives = 235/478 (49%), Gaps = 73/478 (15%)
Query: 3 SSNNVTTRIHSHLLTTN--SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQ---------- 50
SS + ++H+ +LT+ S +T L N L H Y+ A L+ Q
Sbjct: 29 SSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQIPRSHKDVTD 88
Query: 51 ----LQQIYTHSHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
L + H P F D + C + +G Q +
Sbjct: 89 WTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCL 148
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K+G V V A++NMYV G +++ ++F E+ ERN+V+W+ ++ G+VKW +E R
Sbjct: 149 VKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGR 208
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP---------------SEITILAVLPA 199
+F+EMP RN V WT ++ GY NG S E + +T+ ++L A
Sbjct: 209 VVFDEMPERNEVGWTIMIAGYV----GNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSA 264
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
Q+G V + +H Y K I V L+D YAKCG I A K+F+ + ++N+
Sbjct: 265 CAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLP--KRNV 322
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
V+W +++ G AMHG GK ++ F +M + KP+ +TF++VL+ACSH GL
Sbjct: 323 VAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQGYHYFRS 381
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HY C+VD+LGRAG LE+A + +P +VV+ LLG+C+ HG +
Sbjct: 382 LESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGS-LLGSCNAHGKL 440
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++GER+ +++++M+ N +VL+ N+ G+ A LR+++ + K PG S +
Sbjct: 441 QLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSI 498
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 142/354 (40%), Gaps = 82/354 (23%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQS---HVYVNTALVNMYVSLGFLKDSSKLFDELP 130
L+R+C S + G +LHAVI G S + ++ AL ++Y S G + LF ++P
Sbjct: 21 LLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQIP 80
Query: 131 --ERNLVTWNVMITGLVKWG-ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+++ W ++T LV+ G + F+EM VV LD +
Sbjct: 81 RSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVV-----LD-------------D 122
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
+ I++ + + G R Q G K G ++V N +++ Y KCG + +
Sbjct: 123 VAMISVFVLCTRVEDLGMGRQAQ---GCLVKMGL-GLGVKVCNAIMNMYVKCGLVEEVRR 178
Query: 248 LFEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGKAA 278
+F +++ + +N V WT +I+G+ +G +
Sbjct: 179 VFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREG 238
Query: 279 VENFERMQ-KVGLKPNRVTFLSVLNACSHGG-------------------LHY---GCLV 315
+ M + L N VT S+L+AC+ G +H LV
Sbjct: 239 FLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALV 298
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
DM + G ++ A K+ +P +VV +LG + HG + + K++E
Sbjct: 299 DMYAKCGPIDMAFKVFKYLPKR--NVVAWNAMLGGLAMHGRGKFVLDIFPKMIE 350
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 187/376 (49%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ YV G L ++ ++FD +PE+N V+WN +I G V+ ++ AR LFE MPC
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 325
Query: 163 RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG------------ 204
+NV SW ++ GY + A + I+ A++ Q+G
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385
Query: 205 -----------------------AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A+ + +HG K G + V N L+ Y KCG
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES-GCYVGNALLVMYCKCGN 444
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A +FE I E K +VSW ++I+G+A HG GK A+ FE M+K G+ P+ VT + VL
Sbjct: 445 IDDAYIVFEGI--EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 502
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH GL HY C++D+LGRAGRL+ A+ + +P E
Sbjct: 503 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE-P 561
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D LLGA HGN E+GE+ + + EME N G YVL+ N+ A GR+ D R+R
Sbjct: 562 DAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRL 621
Query: 400 VMDERNALKFPGRSLV 415
M +R K PG S V
Sbjct: 622 RMRDRGVKKVPGYSWV 637
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 131/274 (47%), Gaps = 44/274 (16%)
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
YV L D+ +FD +PER+ V+WN MI+G + GEL A+ LFEE P R+V +WT ++
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 273
Query: 173 DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAF- 224
GY + NG E V + + +V +I GY + + F A
Sbjct: 274 SGYVQ----NGMLDEARR-----VFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324
Query: 225 --DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
++ N +I YA+ G I A F+ + +++ +SW +II+G+A G G+ A+ F
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFD--RMPQRDSISWAAIIAGYAQSGYGEEALHLF 382
Query: 283 ERMQKVGLKPNRVTFLSVLNACS-----------HG-----GLHYGCLVD-----MLGRA 321
M++ G + NR TF S L+ C+ HG GL GC V M +
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 442
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
G ++ A + GI E +VV ++ + HG
Sbjct: 443 GNIDDAYIVFEGI--EEKEVVSWNTMIAGYARHG 474
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 21/230 (9%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P S +++ +I C++ L QL K+ + V N +++ V L+ +
Sbjct: 76 PRRSSISWNAMISGCLSNDKFYLARQL---FEKMPTRDLVSWNV-MISGCVRYRNLRAAR 131
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
LFD++PER++V+WN M++G + G ++ A+ +F+EMPC+N +SW G+L Y + R
Sbjct: 132 LLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIED 191
Query: 184 ASTEPSEITILAVLPAIWQ--------NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
A L A W+ G V+ +L+ G D N +I
Sbjct: 192 ARR-------LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISG 244
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
YA+ G + A +LFE+ V +++ +WT+++SG+ +GM A F+ M
Sbjct: 245 YAQNGELLEAQRLFEESPV--RDVFTWTAMVSGYVQNGMLDEARRVFDGM 292
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 24/205 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T++ + TC ++ LG Q+H + K G +S YV AL+ MY G + D+ +F+ +
Sbjct: 396 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 455
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
E+ +V+WN MI G + G + A LFE M TGIL P
Sbjct: 456 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKK------TGIL---------------PD 494
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
++T++ VL A G V + + + + G A + + C+ID + G + A L
Sbjct: 495 DVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITA-NSKHYTCMIDLLGRAGRLDDAQNL 553
Query: 249 FEDISVERKNLVSWTSIISGFAMHG 273
+++ E + +W +++ +HG
Sbjct: 554 MKNMPFE-PDAATWGALLGASRIHG 577
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 29/238 (12%)
Query: 57 HSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 116
HS S LR L + T + R T + P + L V + N A+ N ++
Sbjct: 13 HSRSCLRSLQTTTTAN---RKPSTRNQPKTTSSLATDADIVKW------NIAITN-HMRN 62
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G + +LF+ +P R+ ++WN MI+G + + AR LFE+MP R++VSW ++ G
Sbjct: 63 GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCV 122
Query: 177 RMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS- 229
R A E ++ A+L QNG V+ + I F+ + S
Sbjct: 123 RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEI--------FDEMPCKNSI 174
Query: 230 --NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
N ++ Y + G I A +LFE S L+SW ++ G+ A F+RM
Sbjct: 175 SWNGMLAAYVQNGRIEDARRLFE--SKADWELISWNCMMGGYVKRNRLVDARGIFDRM 230
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 203/382 (53%), Gaps = 36/382 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D +TY+ L+++C +LS G +H + + GF V +V +Y S G + D+ K+F
Sbjct: 623 DEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIGVVELYTSGGRMGDAQKVF 682
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+PERN+V WN+M+ G G+++ S F++M R++VSW ++ ++ R A
Sbjct: 683 DEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALE 742
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P E T++ +LP G + + IH E G I V N L+D Y
Sbjct: 743 LFCEMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVDFY 802
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRV 295
K G + +A +F + +R+N+VSW ++ISG A++G G++ ++ F+ M + G + PN
Sbjct: 803 CKSGDLEAATAIFRKM--QRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEA 860
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TFL VL CS+ G HYG +VD++ R+GR+ +A +
Sbjct: 861 TFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMVDLMSRSGRIREAFEFLRN 920
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + + LL AC HG+V++ E +++++E GN G+YVL+ N+ A GR+ D
Sbjct: 921 MPVN-ANAAMWGSLLSACRSHGDVKLAELAAMELVKIEPGNSGNYVLLSNLYAEEGRWQD 979
Query: 394 AERLRRVMDERNALKFPGRSLV 415
E++R +M + K G+S +
Sbjct: 980 VEKVRTLMKKNCLRKTTGQSTI 1001
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/533 (28%), Positives = 237/533 (44%), Gaps = 124/533 (23%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLL--------FNTLLHFYSLADS----PKKAFLLYKQ 50
S+ + +IH+ +L N LH L F+ H S + P LY
Sbjct: 32 SNLDSVNQIHAQVLKAN--LHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNS 89
Query: 51 LQQIYTHSHS----PLRPLF---------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97
+ + + H+ S P F D+FTY FL++ C S L +HA + K
Sbjct: 90 IIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKF 149
Query: 98 GFQSHVYVNTALVNMY---------------------------------VSLGFLKDSSK 124
GF ++V +L++ Y V G L+ + K
Sbjct: 150 GFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACK 209
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
LFDE+PER++V+WN M+ G K GE++ A LFE MP RN+VSW+ ++ GY++ + A
Sbjct: 210 LFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMA 269
Query: 185 STE----PSEITIL--AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD------------- 225
P++ +L ++ + G VR ++G E+ G D
Sbjct: 270 RVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAES 329
Query: 226 ---------------------IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+V N ID YAKCGC+ +A +F + + +K++VSW S
Sbjct: 330 GMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGM-MAKKDVVSWNS 388
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I GFAMHG G+ A+E F RM G +P+ TF+ +L AC+H GL
Sbjct: 389 MIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVY 448
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC++D+LGR G L++A + +P E + ++ LL AC H +V+
Sbjct: 449 GIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPME-PNAIILGTLLNACRMHNDVDFARA 507
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V ++ ++E + G+Y L+ NI A G +++ +R M K G S +
Sbjct: 508 VCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSI 560
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/429 (32%), Positives = 228/429 (53%), Gaps = 50/429 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC--VTL 81
+ ++N+++ Y L+ PK+A L Y L L + +T+ LI+ C V
Sbjct: 74 NIFMYNSMIRGYFLSRFPKQAILCYLDLMD--------RGFLANKYTFPPLIKACALVYR 125
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+G +HA + +G+++ +V +ALV Y SL LK + LFD+ +++V W VM+
Sbjct: 126 ELKRIGYLVHAHVIVLGYENDAFVVSALVEFY-SLFDLKVARVLFDKSSGKDVVVWTVMV 184
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEI 191
G K G++E AR LF+EMP RNV+SW+ ++ Y+R++ + + P++
Sbjct: 185 DGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDS 244
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
I +VL A GA+ +H Y ++ G ++ I ++ L+D Y+KCG I SAL++FE
Sbjct: 245 VIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPI-LATALVDMYSKCGYIESALEVFEG 303
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
IS K+ +W ++ISGFAM G ++E F++M G + TF+S+L AC+H +
Sbjct: 304 IS--NKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVE 361
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIA---LGIPSEITDVVVRRI 346
HY C+VD++ RAG +E AEK +G S + D V
Sbjct: 362 RGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNV-DANVWGA 420
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+L AC + N+E+G+R+ K+ + +GG VL YNI + GR + A+ +R+ E +
Sbjct: 421 ILSACRQYRNIEIGDRIWTKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARS 480
Query: 407 LKFPGRSLV 415
K PG S++
Sbjct: 481 KKIPGCSVI 489
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 219/412 (53%), Gaps = 56/412 (13%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
++HLL + L+N ++ Y+ + A LY Q++ L P D FT+
Sbjct: 54 NAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDY------GLVP--DKFTF 105
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
F+++ C LS G ++H + + G +S V+V AL++MY G ++ + ++FD++ E
Sbjct: 106 PFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDE 165
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
R++V WN M+ + G+ + + +L CR V+++ G+ +P+E
Sbjct: 166 RDVVCWNSMLATYSQNGQPDESLAL-----CR-VMAFNGL---------------KPTEG 204
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T + + A NG + + +HGY + GF + D +V L+D YAK G + A LFE
Sbjct: 205 TFVISIAASADNGLLPQGKELHGYSWRHGFESND-KVKTALMDMYAKSGSVNVARSLFE- 262
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+E K +VSW ++I+G+AMHG A++ F+ M+ L P+ +TF+ VL ACSHGGL
Sbjct: 263 -LLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL-PDHITFVGVLAACSHGGLLN 320
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HY C++D+LG GRLE+A K+ + + E D V LL
Sbjct: 321 EGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVE-PDAGVWGALLH 379
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
+C HGNVEMGE K++E+E +GG+YV++ N+ A G++ RLR +M
Sbjct: 380 SCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLM 431
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 24/239 (10%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y+ L+++CV G QLHA I +VG + + T LVN+Y L ++ LFD +
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+RNL WNVMI G G E A SL+ +M +V P +
Sbjct: 64 KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLV---------------------PDK 102
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T VL A A+ + IH + G + D+ V LID YAKCGC+ SA ++F+
Sbjct: 103 FTFPFVLKACSALSAMEEGKKIHKDVIRSGLES-DVFVGAALIDMYAKCGCVESARQVFD 161
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
I + +++V W S+++ ++ +G ++ M GLKP TF+ + A + GL
Sbjct: 162 KI--DERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGL 218
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/420 (33%), Positives = 206/420 (49%), Gaps = 75/420 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
NT+L ++ + P+ A L+++ H P D+ TY L++ C L G
Sbjct: 93 LNTVLRIFASSARPRVALALHRR------HLAPP-----DTHTYPPLLQACARLLALRYG 141
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LHA K G S V+V +LV++Y + G + + ++FDE+P
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPP---------------- 185
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAVL 197
P RN+VSW +L+G+ R N T P T+++VL
Sbjct: 186 -------------PERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVL 232
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A + G + + +H + K G + N LID YAKCG + A K+F ++ V R
Sbjct: 233 TACAEIGVLALGRRVHVFVAKVGLVG-NAHAGNALIDLYAKCGGVDDARKMFGEMGVGR- 290
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+VSWTS+I G A++G G A++ F M++ L P +T + VL ACSH GL
Sbjct: 291 TVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYF 350
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
H GC+VD+LGRAGR+E+A +P E + VV R LLGAC+ H
Sbjct: 351 DQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLE-PNAVVWRTLLGACAMHK 409
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+E+GE +++E++ G+ GDYVL+ N+ AGVGR+ D LR+ M K PG SLV
Sbjct: 410 KLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLV 469
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 187/376 (49%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ YV G L ++ ++FD +PE+N V+WN +I G V+ ++ AR LFE MPC
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 244
Query: 163 RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG------------ 204
+NV SW ++ GY + A + I+ A++ Q+G
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304
Query: 205 -----------------------AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A+ + +HG K G + V N L+ Y KCG
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES-GCYVGNALLVMYCKCGN 363
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A +FE I E K +VSW ++I+G+A HG GK A+ FE M+K G+ P+ VT + VL
Sbjct: 364 IDDAYIVFEGI--EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 421
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH GL HY C++D+LGRAGRL+ A+ + +P E
Sbjct: 422 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE-P 480
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D LLGA HGN E+GE+ + + EME N G YVL+ N+ A GR+ D R+R
Sbjct: 481 DAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRL 540
Query: 400 VMDERNALKFPGRSLV 415
M +R K PG S V
Sbjct: 541 RMRDRGVKKVPGYSWV 556
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 131/274 (47%), Gaps = 44/274 (16%)
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
YV L D+ +FD +PER+ V+WN MI+G + GEL A+ LFEE P R+V +WT ++
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192
Query: 173 DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAF- 224
GY + NG E V + + +V +I GY + + F A
Sbjct: 193 SGYVQ----NGMLDEARR-----VFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 243
Query: 225 --DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
++ N +I YA+ G I A F+ + +++ +SW +II+G+A G G+ A+ F
Sbjct: 244 CQNVSSWNTMITGYAQNGDIAQARNFFDRMP--QRDSISWAAIIAGYAQSGYGEEALHLF 301
Query: 283 ERMQKVGLKPNRVTFLSVLNACS-----------HG-----GLHYGCLVD-----MLGRA 321
M++ G + NR TF S L+ C+ HG GL GC V M +
Sbjct: 302 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 361
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
G ++ A + GI E +VV ++ + HG
Sbjct: 362 GNIDDAYIVFEGI--EEKEVVSWNTMIAGYARHG 393
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L+ + LFD++PER++V+WN M++G + G ++ A+ +F+EMPC+N +SW G+L Y +
Sbjct: 46 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQN 105
Query: 179 NRSNGASTEPSEITILAVLPAIWQ--------NGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
R A L A W+ G V+ +L+ G D N
Sbjct: 106 GRIEDARR-------LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 158
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+I YA+ G + A +LFE+ V +++ +WT+++SG+ +GM A F+ M
Sbjct: 159 TMISGYAQNGELLEAQRLFEESPV--RDVFTWTAMVSGYVQNGMLDEARRVFDGM 211
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 24/205 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T++ + TC ++ LG Q+H + K G +S YV AL+ MY G + D+ +F+ +
Sbjct: 315 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 374
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
E+ +V+WN MI G + G + A LFE M TGIL P
Sbjct: 375 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKK------TGIL---------------PD 413
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
++T++ VL A G V + + + + G A + + C+ID + G + A L
Sbjct: 414 DVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITA-NSKHYTCMIDLLGRAGRLDDAQNL 472
Query: 249 FEDISVERKNLVSWTSIISGFAMHG 273
+++ E + +W +++ +HG
Sbjct: 473 MKNMPFE-PDAATWGALLGASRIHG 496
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 209/420 (49%), Gaps = 75/420 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
NT+L + + P+ A L+++ L P D+ TY L++ C L G
Sbjct: 91 LNTVLRIAASSAHPRIALALHRRR----------LAPP-DTHTYPPLLQACTRLLALREG 139
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LHA +K G + V+V +LV+ Y + G + + ++FDE+P
Sbjct: 140 ESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIP----------------- 182
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEITILAVL 197
+ E RN+VSW +++G+ R N A P TI++VL
Sbjct: 183 --------VLE----RNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVL 230
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A + GA+ + +H + K G + V N LID YAKCG + A K+FE++ V R
Sbjct: 231 TACAEIGALTLGRRVHVFASKVGLVG-NSHVGNALIDLYAKCGGVEDAWKVFEEMGVAR- 288
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+VSWTS+I G A +G GK A+E F M++ L P +T + VL ACSH GL
Sbjct: 289 TVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYF 348
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
H GC+VD+LGRAGR+E+A +P E + VV R LLGAC+ H
Sbjct: 349 NEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVE-PNAVVWRTLLGACAMHK 407
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+E+GE +++E++ G+ GDYVL+ N+ A VGR+ DA LR+ M K PG SLV
Sbjct: 408 KLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLV 467
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 214/412 (51%), Gaps = 55/412 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++FN++ YS +P + F L+ ++ + + P D++T+ L++ C
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILE------DGILP--DNYTFPSLLKACAVAKALE 146
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH + K+G +VYV L+NMY + + +FD + E +V +N MITG
Sbjct: 147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYA 206
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ A SLF EM G +P+EIT+L+VL + G+
Sbjct: 207 RRNRPNEALSLFREM---------------------QGKYLKPNEITLLSVLSSCALLGS 245
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IH Y +K F + ++V+ LID +AKCG + A+ +FE + K+ +W+++
Sbjct: 246 LDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSIFE--KMRYKDTQAWSAM 302
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG----------------- 308
I +A HG + ++ FERM+ ++P+ +TFL +LNACSH G
Sbjct: 303 IVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFG 362
Query: 309 -----LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HYG +VD+L AG LE A + +P T ++ RILL ACS H N+++ E+V
Sbjct: 363 IVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTP-MLWRILLAACSSHNNLDLAEKV 421
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++ E++ +GGDYV++ N+ A ++ + LR+VM +R A+K PG S +
Sbjct: 422 SERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSI 473
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 34/212 (16%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAVLPA 199
+ YAR LFE M ++V + + GY+R + P T ++L A
Sbjct: 79 MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
A+ + +H K G + ++ V LI+ Y +C + SA +F+ I VE +
Sbjct: 139 CAVAKALEEGRQLHCLSMKLGLDD-NVYVCPTLINMYTECEDVDSARXVFDRI-VE-PCV 195
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-------------H 306
V + ++I+G+A A+ F MQ LKPN +T LSVL++C+ +
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 307 GGLHYGC--------LVDMLGRAGRLEQAEKI 330
H C L+DM + G L+ A I
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSI 287
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 219/424 (51%), Gaps = 81/424 (19%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV----TLS 82
++N L +LA ++ LY ++ +I S D FTY+++++ CV T++
Sbjct: 145 VWNALFRALTLAGHGEEVLGLYWKMNRIGVES--------DRFTYTYVLKACVASECTVN 196
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
+ G ++HA +++ G+ SHVY+ T LV+MY
Sbjct: 197 HLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYA---------------------------- 228
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------------STEPSE 190
++G ++YA +F MP RNVVSW+ ++ Y + ++ A + P+
Sbjct: 229 ---RFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+T+++VL A A+ +LIHGY +RG ++ + V + L+ Y +CG + ++F+
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSI-LPVISALVTMYGRCGKLEVGQRVFD 344
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+ +++VSW S+IS + +HG GK A++ FE M G P VTF+SVL ACSH GL
Sbjct: 345 --RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HY C+VD+LGRA RL++A K+ + +E V LL
Sbjct: 403 EEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS-LL 461
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
G+C HGNVE+ ER +R++ +E N G+YVL+ +I A + + +R++++++ R K
Sbjct: 462 GSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQK 521
Query: 409 FPGR 412
PGR
Sbjct: 522 LPGR 525
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 169/422 (40%), Gaps = 105/422 (24%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
KQ ++ + SP + TY LI C S + ++H I G ++ T
Sbjct: 63 KQAIRVLSQESSPSQQ-----TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATK 117
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+ MY LG + + K+FD+ +R + WN + L G E
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE----------------- 160
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQL----IHGYGEKRGFNAF 224
+L Y +MNR E T VL A + N + IH + +RG+++
Sbjct: 161 -EVLGLYWKMNR---IGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSH 216
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ + L+D YA+ GC+ A +F + V +N+VSW+++I+ +A +G A+ F
Sbjct: 217 -VYIMTTLVDMYARFGCVDYASYVFGGMPV--RNVVSWSAMIACYAKNGKAFEALRTFRE 273
Query: 285 MQK--VGLKPNRVTFLSVLNACS------HGGLHYG---------------CLVDMLGRA 321
M + PN VT +SVL AC+ G L +G LV M GR
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRC 333
Query: 322 GRLEQAEKI---------------------------ALGI----------PSEITDVVVR 344
G+LE +++ A+ I P+ +T V V
Sbjct: 334 GKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV- 392
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNG-----GDYVLMYNILAGVGRYVDAERLRR 399
LGACS G VE G+R+ M R +G Y M ++L R +A ++ +
Sbjct: 393 ---LGACSHEGLVEEGKRLFET---MWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 400 VM 401
M
Sbjct: 447 DM 448
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 216/422 (51%), Gaps = 46/422 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ + P KA L+++++ H ++ T ++ C LG
Sbjct: 311 WNSMVTGFVQGGYPDKALDLFERMRNEGVHP--------NAVTMVSVMSACAKTMNLTLG 362
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++ I + ++ V A ++M+V G ++ + LFD + +R++V+W +I G K
Sbjct: 363 RKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKM 422
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------------STEPSEITILA 195
E AR +F+ MP +++ +W ++ GY + R A P ++T+L+
Sbjct: 423 SEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLS 482
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L A Q GA+ + IHGY +K + ++ LID Y+K G + A+++F S+
Sbjct: 483 TLSACAQLGAMDIGEWIHGYIKKERIQ-LNRNLATSLIDMYSKSGDVEKAIEVFH--SIG 539
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K++ W+++I+G AMHG G+AA+E F MQ+ +KPN VTF ++L ACSH GL
Sbjct: 540 NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKR 599
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HY C+VD+LGRAG LE+A K G+P + V LLGAC
Sbjct: 600 LFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPS-ASVWGALLGACCI 658
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGN+E+ E+ ++LE+E GN G YVL+ N+ A G + LR+ M + K G S
Sbjct: 659 HGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCS 718
Query: 414 LV 415
+
Sbjct: 719 SI 720
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/433 (24%), Positives = 187/433 (43%), Gaps = 93/433 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L+ + + P ++ L++ ++ SP P + FT+ LI+ +G
Sbjct: 207 WNILIRALATSSDPIQSVLVFIRMLH-----DSPFGP--NKFTFPVLIKAVAERRCFLVG 259
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD--ELPERNLVTWNVMITGLV 145
+H + K F V+V +L++ Y S G L + +F+ E +++V+WN M+TG V
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFV 319
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G + A LFE M R+ G P+ +T+++V+ A +
Sbjct: 320 QGGYPDKALDLFERM-------------------RNEG--VHPNAVTMVSVMSACAKTMN 358
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + + Y + R ++ V N ID + KCG + A LF+++ E++++VSWT+I
Sbjct: 359 LTLGRKVCDYID-RNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNM--EKRDVVSWTTI 415
Query: 266 ISGFAM---HGMG----------------------------KAAVENFERMQ--KVGLKP 292
I G+A HG+ K A+ F +Q K G +P
Sbjct: 416 IDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARP 475
Query: 293 NRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIA 331
++VT LS L+AC+ G + G L+DM ++G +E+A ++
Sbjct: 476 DQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVF 535
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN-GGDYVLMYNILAGVGR 390
I ++ DV V ++ + HG GE L+M+ + V N+L
Sbjct: 536 HSIGNK--DVFVWSAMIAGLAMHGR---GEAAIELFLDMQETQVKPNSVTFTNLLCACSH 590
Query: 391 YVDAERLRRVMDE 403
+ +R+ DE
Sbjct: 591 SGLVDEGKRLFDE 603
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 36/280 (12%)
Query: 34 FYSLADSPKKAFLLYKQL-QQIYTHSH-SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLH 91
Y +ADS K+ + + I HS +P + L + C S+ L Q+H
Sbjct: 103 MYFIADSEKEKEEWINSIGRSIVQHSSPTPASATATNVGDRALFQQCT--SFKQL-KQIH 159
Query: 92 AVISKVGFQSHVYVNTALVNM--YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
A + + Y + L + S L + K+FD++P+ NL +WN++I L +
Sbjct: 160 AQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSD 219
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
P ++V+ + +L + + P++ T ++ A+ A R C
Sbjct: 220 -----------PIQSVLVFIRML---------HDSPFGPNKFTFPVLIKAV----AERRC 255
Query: 210 QL----IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
L +HG K F D+ V N LI YA CG + A +FE I K++VSW S+
Sbjct: 256 FLVGKAVHGMAIKTSFGD-DVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSM 314
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++GF G A++ FERM+ G+ PN VT +SV++AC+
Sbjct: 315 VTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA 354
>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
Length = 686
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 184/339 (54%), Gaps = 41/339 (12%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ Y G L+++ ++FD +PE+N V+WN M+ V+ +E A+ LF+ MPC
Sbjct: 252 VFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPC 311
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
RNV SW +L GY + + A I ++P Q AV ++ Y + GF+
Sbjct: 312 RNVASWNTMLTGYAQAGMLDEAR------AIFDMMP---QKDAVSWAAMLAAYSQG-GFS 361
Query: 223 AFDIR----VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
++ + C + Y KCG + A FE++ E +++VSW ++I+G+A HG GK A
Sbjct: 362 EETLQLFKEMGRCAM--YFKCGNMEEAHSAFEEM--EERDIVSWNTMIAGYARHGFGKEA 417
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+E F+ M+K KP+ +T + VL ACSH GL HY C++D
Sbjct: 418 LEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMID 477
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+LGRAGRL++A + +P E D + LLGA H N E+G K+ E+E N G
Sbjct: 478 LLGRAGRLDEAVNLMKDMPFE-PDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAG 536
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVL+ NI A G++ D +++R +M ER K PG S +
Sbjct: 537 MYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWI 575
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 158/348 (45%), Gaps = 55/348 (15%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT-----CVTLS 82
+NTLLH ++ S A L+ ++ P+ DS +Y+ +I + V+L+
Sbjct: 100 YNTLLHALGVSSSLADARALFDEM------------PVKDSVSYNVMISSHANHGLVSLA 147
Query: 83 --YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
Y +L + AV ++ Y+ G ++++ LFD E + ++WN +
Sbjct: 148 RHYFDLAPEKDAVSW-----------NGMLAAYIRNGRIQEARDLFDSRTEWDAISWNAL 196
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
+ G V+ ++E A+ +F MP R+VVSW ++ G+ R G E + +A + +
Sbjct: 197 MAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHAR----RGDMAEARRLFDVAPIRDV 252
Query: 201 WQNGAVRNCQLIHGYGE--KRGFNAFDIRVS---NCLIDTYAKCGCIFSALKLFEDISVE 255
+ AV + +G E KR F+A + + N ++ Y + + A +LF+ +
Sbjct: 253 FTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPC- 311
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL- 314
+N+ SW ++++G+A GM A F+ M + + V++ ++L A S GG L
Sbjct: 312 -RNVASWNTMLTGYAQAGMLDEARAIFDMMP----QKDAVSWAAMLAAYSQGGFSEETLQ 366
Query: 315 -------VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
M + G +E+A + E D+V ++ + HG
Sbjct: 367 LFKEMGRCAMYFKCGNMEEAHSAFEEM--EERDIVSWNTMIAGYARHG 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 44/217 (20%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----- 162
A++ Y + G L + F +P + ++N ++ L L AR+LF+EMP
Sbjct: 71 AMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVS 130
Query: 163 --------------------------RNVVSWTGILDGYTRMNRSNGA------STEPSE 190
++ VSW G+L Y R R A TE
Sbjct: 131 YNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDA 190
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
I+ A++ Q + Q + +R D+ N ++ +A+ G + A +LF+
Sbjct: 191 ISWNALMAGYVQCSQIEEAQKMFNRMPQR-----DVVSWNTMVSGHARRGDMAEARRLFD 245
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+ +++ +WT+++SG+A +GM + A F+ M +
Sbjct: 246 VAPI--RDVFTWTAVVSGYAQNGMLEEAKRVFDAMPE 280
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 220/437 (50%), Gaps = 57/437 (13%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P N + R+ S L N L H NT++ +SL+ +P + F L++ L++ + +P
Sbjct: 59 PRDINYSCRVFSQRL--NPTLSHC---NTMIRAFSLSQTPCEGFRLFRALRRNISFPANP 113
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
L + SF ++ C+ G Q+H I GF S + T L+++Y + D
Sbjct: 114 L-------SSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTD 166
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+FDE+P+R+ V+WNV+I+ ++ LF++M +N V
Sbjct: 167 ACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKM--KNDVD-------------- 210
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+P +T L L A GA+ + +H + ++ G + + +SN L+ Y++CG
Sbjct: 211 --RCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSG-ALNLSNTLVSMYSRCGS 267
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A ++F + +N+VSWT++ISG AM+G GK A+E F M K G+ P T +L
Sbjct: 268 MDKAYEVFN--RMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLL 325
Query: 302 NACSHGGL-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+ACSH GL HYGC+VD+LGRA L++A + + +
Sbjct: 326 SACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMK- 384
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D + R LLGAC HGNVE+GERV ++E + GDYVL+ N + VG++ LR
Sbjct: 385 PDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELR 444
Query: 399 RVMDERNALKFPGRSLV 415
+M ++ PG S +
Sbjct: 445 SLMKKKRIQTNPGCSAI 461
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 210/410 (51%), Gaps = 48/410 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ Y +A ++ ++ S L P D T + ++ C +L G
Sbjct: 216 WNSLITCYEQNGPASEALEVFVRMMD------SGLEP--DEVTLASVVSACASLCALKEG 267
Query: 88 TQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+HA + K F+ + + ALV+MY + ++ ++FD + RN+V+ M++G +
Sbjct: 268 LQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYAR 327
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
++ AR +F +M RNVVSW ++ GYT+ NG + E + L +IW
Sbjct: 328 AASVKAARFMFSKMTQRNVVSWNALIAGYTQ----NGENEEALRLFRLLKRESIWPTH-- 381
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +G DI V N LID Y KCG I ++FE + + ++ VSW +II
Sbjct: 382 ------YTFG---NLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKM--KERDCVSWNAII 430
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
G+A +G G A++ F +M G KP+ VT + VL ACSH GL
Sbjct: 431 VGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLI 490
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY C+VD+LGRAG L +A+ + +P D VV LL AC HGN+EMG+
Sbjct: 491 PLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVN-PDAVVWGSLLAACKVHGNIEMGKHAAE 549
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K+LE++ N G YVL+ N+ A +GR+ D R+R++M ++ K PG S +
Sbjct: 550 KLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWI 599
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 133/269 (49%), Gaps = 30/269 (11%)
Query: 51 LQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQL-HAVISKVGFQSHVYVNTAL 109
++ +Y + SP L DS S R GT+L HA I F +++ L
Sbjct: 7 VRDLYLPNSSPFAKLLDSCLRSRSAR----------GTRLVHARILMTQFSMEIFIQNRL 56
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
+++Y L D+ KLFD +P+RN TWN +I+ L K G L+ A LF MP + SW
Sbjct: 57 IDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWN 116
Query: 170 GILDGYT-------------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
++ G+ +M+R + E S + L+ + + +H
Sbjct: 117 SMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMD---LNMGTQVHALV 173
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
K ++ D+ + + LID Y+KCG + A ++F + +ER NLV+W S+I+ + +G
Sbjct: 174 SKSRYST-DVYMGSALIDMYSKCGSVACAEEVFSGM-IER-NLVTWNSLITCYEQNGPAS 230
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACS 305
A+E F RM GL+P+ VT SV++AC+
Sbjct: 231 EALEVFVRMMDSGLEPDEVTLASVVSACA 259
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 136/295 (46%), Gaps = 53/295 (17%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L + +++ + C L N+GTQ+HA++SK + + VY+ +AL++MY G + + +
Sbjct: 144 LLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEE 203
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F + ERNLVTWN +IT + G A L+ + RM S
Sbjct: 204 VFSGMIERNLVTWNSLITCYEQNGPASEA------------------LEVFVRMMDSG-- 243
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E+T+ +V+ A A++ IH K D+ + N L+D YAKC +
Sbjct: 244 -LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNE 302
Query: 245 ALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMG 275
A ++F+ +S+ ++N+VSW ++I+G+ +G
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
+ A+ F +++ + P TF ++L + G L+DM + G +E ++
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLKSDIFVG---NSLIDMYMKCGSIEDGSRV 414
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 122/306 (39%), Gaps = 56/306 (18%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL------- 62
+IH+ ++ TN +L N L+ Y+ +A ++ ++ S + +
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328
Query: 63 ------RPLFDSFTYSFLIR-TCVTLSYPNLGT-----QLHAVISKVG-----------F 99
R +F T ++ + Y G +L ++ +
Sbjct: 329 ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL 388
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
+S ++V +L++MY+ G ++D S++F+++ ER+ V+WN +I G + G A +F +
Sbjct: 389 KSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRK 448
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
M +P +T++ VL A G V + E+
Sbjct: 449 MLV---------------------CGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEH 487
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGK 276
G + C++D + GC+ A L E + V + V W S+++ +HG MGK
Sbjct: 488 GLIPLKDHYT-CMVDLLGRAGCLNEAKNLIEAMPVN-PDAVVWGSLLAACKVHGNIEMGK 545
Query: 277 AAVENF 282
A E
Sbjct: 546 HAAEKL 551
>gi|297848568|ref|XP_002892165.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338007|gb|EFH68424.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 429
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/401 (32%), Positives = 203/401 (50%), Gaps = 38/401 (9%)
Query: 47 LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106
++Q ++ HS D+ +S +++C +P LG +HA K F S+ +V
Sbjct: 27 FHEQALTLFRQMHSSFALPLDAHVFSLALKSCAAAFHPVLGGSVHAHSVKSNFLSNPFVG 86
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NV 165
AL++MY + + KLFDE+P+RN V WN MI+ G+++ A L+E M N
Sbjct: 87 CALLDMYGKCLSVTHARKLFDEIPQRNAVVWNAMISHYTHCGKIQEAVELYEAMDVMPNE 146
Query: 166 VSWTGILDGYTRMNRSNGASTE-----------PSEITILAVLPAIWQNGAVRNCQLIHG 214
S+ I+ G+ + + E P+ IT+LA++ A GA R + IH
Sbjct: 147 SSFNAIIKGFVGTEDGSYKAIEFYRKMIDFRFKPNLITLLALVSACSAIGAFRLIKEIHS 206
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
Y R ++ + L++ Y +CGCI +FE S+ +++V+W+S+IS +A+HG
Sbjct: 207 YA-FRNLIEPHPQLKSGLVEAYGRCGCIVYVQLVFE--SMTDRDVVAWSSLISAYALHGD 263
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
++A+ F+ M+ + P+ + FL+VL ACSH GL HY
Sbjct: 264 AESALRTFQEMESAKVTPDDIAFLNVLKACSHAGLADEALLYFKRMQGDYGLRASRDHYS 323
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
CLVD+L R GR E+A K+ +P + T LLGAC +G VE+ E +++ ++E
Sbjct: 324 CLVDVLSRVGRFEEAYKVIQAMPEKPT-AKTWGALLGACRNYGEVELAEIAAKELWKIEP 382
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
N +YVL+ I VGR +AERLR M E PG S
Sbjct: 383 ENPANYVLLGKIYMSVGRQEEAERLRMEMKESGVKVSPGSS 423
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 208/411 (50%), Gaps = 53/411 (12%)
Query: 28 FNTLLHFYSLADSPK--KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+NTLL Y+ + +P +A + ++ +P D++T+ L++ C
Sbjct: 96 YNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAP-----DTYTFVSLLKACAAARAGE 150
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q HA+ K+G H YV L+NMY G + + +F +V++N MI V
Sbjct: 151 EGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAV 210
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ A LF EM G +P+ +T+++VL A GA
Sbjct: 211 RSSRPGEALVLFREM---------------------QGKGLKPTSVTVISVLSACALLGA 249
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H Y K G + ++VS LID YAKCG + A+ +F+ +E K+ +W+ +
Sbjct: 250 LELGRWVHDYVRKIGLGSL-VKVSTALIDMYAKCGSLEDAIDVFQ--GMESKDRQAWSVM 306
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I +A HG G+ A+ FE M+K G+KP+ +TFL VL ACSH GL
Sbjct: 307 IVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKDHGI 366
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+ D+L R+G+LE+A K +P T ++ R LL AC HG+ E+G+RV
Sbjct: 367 VPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPIL-WRTLLSACGGHGDFELGKRVF 425
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++L+++ +GGDYV+ N+ A G + + +R++M E+ +K PG S +
Sbjct: 426 ERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSI 476
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 118/307 (38%), Gaps = 73/307 (23%)
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLHA K G +H ALV ++L D+
Sbjct: 42 AQLHAAAVKAGLAAH----PALVTRLLTLCTGPDAGP----------------------- 74
Query: 148 GELEYARSLFEEMP-CRNVVSWTGILDGYTRMNRSNGASTE-----------------PS 189
L YAR +F+ +P + V + +L GY R SN +S+E P
Sbjct: 75 AHLAYARQVFDRVPHPADAVWYNTLLRGYAR--SSNPSSSEAAAAVRVFVRMLEEGVAPD 132
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
T +++L A A + H K G D V LI+ YA+CG +A +F
Sbjct: 133 TYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDY-VRPTLINMYAECGDARAARVMF 191
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGG 308
+ +VS+ ++I+ A+ F MQ GLKP VT +SVL+AC+ G
Sbjct: 192 G--GTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGA 249
Query: 309 LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
L G L+DM + G LE A + G+ S+ D +++
Sbjct: 250 LELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESK--DRQAWSVMI 307
Query: 349 GACSFHG 355
A + HG
Sbjct: 308 VAYANHG 314
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 203/388 (52%), Gaps = 41/388 (10%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L + T S + C L+ +G LH K+ YV TAL+ MY G +
Sbjct: 121 LPTAHTLSASLPACGCLA---VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARA 177
Query: 125 LFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
LFD + P+ ++V+ M++ K G+L+ AR LF+ +P +++V W ++DGYT+ R +
Sbjct: 178 LFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSE 237
Query: 184 A----------STEPSEITILAVLPAIWQNGAVRNCQLIHGY---GEKRGFNAFDIRVSN 230
A EP E++++ L A+ Q G + + +H + G +R + RV
Sbjct: 238 ALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGT 297
Query: 231 CLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
L+D Y KCG + A+ +F D+ +++V+W ++I+G+AMHG + A+E F +++ G
Sbjct: 298 ALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQG 357
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
L P +TF+ VLNACSH GL HYGC+VD+LGRAGR+E+A
Sbjct: 358 LWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEA 417
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ + ++ D + LLGAC H N+ +G+RV ++ N G YVL+ N+ A
Sbjct: 418 FDLVQSMKAK-PDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAA 476
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
G++ + R+R +M K PG S V
Sbjct: 477 AGKWREVGRVRSMMRASGVQKEPGCSAV 504
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/531 (27%), Positives = 236/531 (44%), Gaps = 126/531 (23%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLL--------FNTLLHFYSLADS----PKKAFLLYKQLQQ 53
+ +IH+ +L N LH L F+ H S + P LY + +
Sbjct: 35 DSVNQIHAQVLKAN--LHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIR 92
Query: 54 IYTHSHS----PLRPLF---------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
+ H+ S P F D+FTY FL++ C S L +HA + K+GF
Sbjct: 93 AHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFY 152
Query: 101 SHVYVNTALVNMY---------------------------------VSLGFLKDSSKLFD 127
++V +L++ Y V G L+ + KLFD
Sbjct: 153 GDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFD 212
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---------- 177
E+P+R++V+WN M+ G K GE++ A LFE MP RN+VSW+ ++ GY++
Sbjct: 213 EMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARML 272
Query: 178 -------------------------------MNRSNGASTEPSEITILAVLPAIWQNGAV 206
+ A P + +L++L A ++G +
Sbjct: 273 FDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGML 332
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH + F +V N ID YAKCGC+ +A +F + + +K++VSW S+I
Sbjct: 333 GLGKRIHASMRRWRFRC-GAKVLNAFIDMYAKCGCLDAAFDVFSGM-MAKKDVVSWNSMI 390
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
GFAMHG G+ A+E F M + G +P+ TF+ +L AC+H GL
Sbjct: 391 QGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGI 450
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC++D+LGR G L++A + +P E + ++ LL AC H +V++ V
Sbjct: 451 VPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPME-PNAIILGTLLNACRMHNDVDLARAVC 509
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ ++E + G+Y L+ NI A G +++ +R M K G S +
Sbjct: 510 EQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSI 560
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 223/437 (51%), Gaps = 57/437 (13%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P N + R+ S L N L H NT++ +SL+ +P + F L++ L++ +S P
Sbjct: 59 PRDINYSCRVFSQRL--NPTLSHC---NTMIRAFSLSQTPCEGFRLFRSLRR---NSSLP 110
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
PL + SF ++ C+ G Q+H I GF S + T L+++Y + D
Sbjct: 111 ANPL----SSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTD 166
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+FDE+P+R+ V+WNV+ + ++ LF++M +N V DG +
Sbjct: 167 ACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKM--KNDV------DGCVK---- 214
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P +T L L A GA+ + +H + ++ G + + +SN L+ Y++CG
Sbjct: 215 ------PDGVTCLLALQACANLGALDFGKQVHDFIDENGLSG-ALNLSNTLVSMYSRCGS 267
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A ++F + +N+VSWT++ISG AM+G GK A+E F M K G+ P T +L
Sbjct: 268 MDKAYQVF--YGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLL 325
Query: 302 NACSHGGL-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+ACSH GL HYGC+VD+LGRA L++A + + +
Sbjct: 326 SACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMK- 384
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D + R LLGAC HG+VE+GERV ++E++ GDYVL+ N + VG++ LR
Sbjct: 385 PDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELR 444
Query: 399 RVMDERNALKFPGRSLV 415
+M E+ PG S +
Sbjct: 445 SLMKEKRIHTKPGCSAI 461
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 220/420 (52%), Gaps = 43/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ +S + P+ + LY + + T SP++P TY + + L + G
Sbjct: 89 WNTIIRGFSRSSVPQNSISLY--IDMLLT---SPVQP--QRLTYPSVFKAFAQLDLASEG 141
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLH + K+G ++ ++ ++ MYV+ GF ++ K+FD + ++V WN MI G+ K
Sbjct: 142 AQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKC 201
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G ++ +R LF++M RN VSW ++ GY R R A EPSE T++++L
Sbjct: 202 GLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLL 261
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA+R + IH Y K+ F I V+ +ID Y+KCG I A+++F+ S R+
Sbjct: 262 NACACLGAIRQGEWIHDYMVKKKFELNPIVVT-AIIDMYSKCGSIDKAVQVFQ--SAPRR 318
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
L W S+I G AM+G A++ F +Q L+P+ V+F++VL AC H G+
Sbjct: 319 GLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYF 378
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
H+ C+VD+LGRAG LE+AE++ + + D ++ LL +C +G
Sbjct: 379 LLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVD-PDAIIWGSLLWSCCKYG 437
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N++M +R ++E+ +VL+ N A + +A + R + E + K PG S +
Sbjct: 438 NIKMAKRAANHLIELNPSESSSFVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCI 497
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 143/319 (44%), Gaps = 54/319 (16%)
Query: 58 SHSPLRPLFDSFTY-SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS- 115
S + + L TY S L + C T+ +L ++H+ + K G + ++ S
Sbjct: 11 SPATISKLISDQTYLSMLDKNCTTMK--DL-KKIHSQLIKTGLAKDTNAASRILAFCASP 67
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM-------PCRNVVSW 168
G + + +F ++ N+ WN +I G + + + SL+ +M P R +++
Sbjct: 68 AGDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQR--LTY 125
Query: 169 TGILDGYTRMN-RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIH----GYGEK----- 218
+ + +++ S GA I + + + +RN L G+ +
Sbjct: 126 PSVFKAFAQLDLASEGAQLHGKMIKL-----GLENDSFIRNTILFMYVNCGFTSEARKVF 180
Query: 219 -RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
RG + FDI N +I AKCG + + +LF+ +S+ +N VSW S+ISG+ +G
Sbjct: 181 DRGMD-FDIVAWNTMIMGVAKCGLVDESRRLFDKMSL--RNAVSWNSMISGYVRNGRFFD 237
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVD 316
A+E F++MQ ++P+ T +S+LNAC+ G + G ++D
Sbjct: 238 ALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIID 297
Query: 317 MLGRAGRLEQAEKIALGIP 335
M + G +++A ++ P
Sbjct: 298 MYSKCGSIDKAVQVFQSAP 316
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/483 (30%), Positives = 230/483 (47%), Gaps = 91/483 (18%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+ L + + + + NT++ YS P KA L+Y ++Q++ S D FTY
Sbjct: 51 HACALFQETSMDDSFICNTMIRAYSNTVFPLKALLIYNRMQRMDVDS--------DHFTY 102
Query: 72 SFLIRTCVTLS--------------YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
+F++R C G+++HA I K+GF +V +L+ +Y G
Sbjct: 103 NFVLRACARAIKCTEMDDQCFGHHIISRKGSEIHARILKLGFDQDHHVQNSLLLVYSGSG 162
Query: 118 FL-------------------------------KDSSKLFDELPERNLVTWNVMITGLVK 146
+ K + L + +P+ N V+WN ++ ++
Sbjct: 163 LVGFARLIFNEMTVKTAVSWNIMMSAYNRVHDYKSADVLLESMPQTNAVSWNTLLARYIR 222
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAV 196
L AR +FEEMP R+VVSW I+ GY + GA + +E+T +++
Sbjct: 223 LNNLVAARKVFEEMPERDVVSWNSIISGYVNVKDYKGALDLFHSMKQWNIRATEVTFISI 282
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A + GA+ + IH +++ + + + N ++D YAKCG + AL++F ++ E
Sbjct: 283 LGACAELGALEIGKKIHDSLKEKHYR-IEGYLGNAIVDMYAKCGELGLALEVFNEM--EM 339
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSHGGL----- 309
K + W ++I G A+HG + A+E F+ M+ KPNR+TF+++L ACSH GL
Sbjct: 340 KPVSCWNAMIMGLAVHGHCERALEMFDSMKAEDGDHKPNRITFIALLIACSHKGLLAEGR 399
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+L R G LE+A + P V+ R LLG C
Sbjct: 400 HFFSLMVTKYKIMPDLKHYGCMIDLLSRWGFLEEAYVMIKTCPFSSCSVL-WRTLLGGCR 458
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H +VE+GE RK+ E+E G GDYVL+ NI A R+ D ERLR+ M K G
Sbjct: 459 LHRHVELGEESFRKLAELEPGKDGDYVLLSNIYAEEERWDDVERLRKEMINYGVCKKAGS 518
Query: 413 SLV 415
S V
Sbjct: 519 SHV 521
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/478 (29%), Positives = 226/478 (47%), Gaps = 106/478 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L N+++ Y ++F LY+ L++ S +P DSFT+S L ++C
Sbjct: 226 AFLCNSMIKAYVGMRQYSESFALYRDLRR--NTSFTP-----DSFTFSVLAKSCALNMAI 278
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW------- 137
G ++H+ + VGF +Y TALV+MY G + + KLFDE+ +R+ V+W
Sbjct: 279 WEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGY 338
Query: 138 ------------------------NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
N MI VK G++ AR LF+EMP R+VVSWT ++
Sbjct: 339 VRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIY 398
Query: 174 GYTRMNRSNGA------------------------------------------STEPSEI 191
GY+ + A S EP E+
Sbjct: 399 GYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEV 458
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
TI++VLPAI GA+ +H + ++ + V LID YAKCG I + +F++
Sbjct: 459 TIVSVLPAIADLGALDLGGWVHRFVRRKKLDRA-TNVGTALIDMYAKCGEIVKSRGVFDN 517
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ K SW ++I+ FA++G K A+ F M G PN +T + VL+AC+H GL
Sbjct: 518 MP--EKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVE 575
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC+VD+LGRAG L++AEK+ +P E +++ L A
Sbjct: 576 EGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLF-A 634
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
C + +V ERV ++ ++ME N G+Y+++ N+ A R+ +A+ ++ +M RN +K
Sbjct: 635 CGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLM-RRNGVK 691
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 196/378 (51%), Gaps = 33/378 (8%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T+ +I C + P L L + + Q + +V TAL++MY G + + ++F
Sbjct: 259 DETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIF 318
Query: 127 DEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
DEL RN VTWN MI+ + G L+ AR LF MP RNVV+W ++ GY + +S A
Sbjct: 319 DELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 378
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
P E+T+++V+ A GA+ + + + I N +I
Sbjct: 379 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIK-LSISGHNAMIF 437
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y++CG + A ++F++++ +++VS+ ++ISGFA HG G A+ M++ G++P+R
Sbjct: 438 MYSRCGSMEDAKRVFQEMAT--RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR 495
Query: 295 VTFLSVLNACSHGGL-----------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
VTF+ VL ACSH GL HY C+VD+LGR G LE A++ +P E
Sbjct: 496 VTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMPME 555
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
V LL A H VE+GE K+ E+E N G+++L+ NI A GR+ D ER+
Sbjct: 556 -PHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERI 614
Query: 398 RRVMDERNALKFPGRSLV 415
R M + K G S V
Sbjct: 615 REAMKKGGVKKTTGWSWV 632
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 139/514 (27%), Positives = 214/514 (41%), Gaps = 147/514 (28%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
++HLL ++L + +F ++L FYS K L+++ +Q +RP D+F Y
Sbjct: 52 YTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQG------CGVRP--DAFVY 103
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE--- 128
LI+ S N G HA + K+G S +V A+++MY LG + + K+FDE
Sbjct: 104 PILIK-----SAGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPD 158
Query: 129 ------------------------------LPERNLVTWNVMITGLVKWGELEYARSLFE 158
+PERN++TW M+TG K +LE AR F+
Sbjct: 159 YERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFD 218
Query: 159 EMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNG-AVR 207
MP R+VVSW +L GY + + A EP E T + V+ A G
Sbjct: 219 CMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCL 278
Query: 208 NCQLIHGYGEKR-GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---------- 256
L+ +K+ N F V L+D YAKCG I +A ++F+++ R
Sbjct: 279 AASLVRTLHQKQIQLNCF---VRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMIS 335
Query: 257 --------------------KNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRV 295
+N+V+W S+I+G+A +G A+E F+ M L P+ V
Sbjct: 336 AYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 395
Query: 296 TFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T +SV++AC H G L G ++ M R G +E A+++ +
Sbjct: 396 TMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 455
Query: 335 PSEITDVVVRRILLGACSFHGN-VEM-------------GERVT---------------- 364
+ DVV L+ + HG+ VE +RVT
Sbjct: 456 ATR--DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEE 513
Query: 365 -RKVLEMERGNGGD-YVLMYNILAGVGRYVDAER 396
RKV E + D Y M ++L VG DA+R
Sbjct: 514 GRKVFESIKDPAIDHYACMVDLLGRVGELEDAKR 547
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 222/446 (49%), Gaps = 53/446 (11%)
Query: 9 TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQ--IYTHSHSPLRPLF 66
RI + L+T+ L L + L+ ++ + P+ A LY L + ++ H+ L L
Sbjct: 37 ARIQAALVTSGLLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHT-LPSLL 95
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL-GFLKDSSKL 125
S S + L+ L HAV ++G + VN AL+ ++ L G L D+ L
Sbjct: 96 KSLALSPAVPGARRLA---LAVHAHAV--RLGLAGFLLVNNALIRVHAGLLGRLADAHLL 150
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------- 177
+ T+N +IT + G + ARSLF+EMP RN VSW+ +++GY +
Sbjct: 151 LRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREAL 210
Query: 178 --MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NC 231
++ P + ++ VL A Q GA+ + +HGY A +IR++
Sbjct: 211 GVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGY-----LKANNIRMTVFLGTA 265
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
L+D YAKCG + +++FE ++ KN+++WT++I G AMHG G ++ F +M+ G+K
Sbjct: 266 LVDMYAKCGEVQLGMEVFE--GMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVK 323
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+ + F+ L AC+H GL HYGC+VD+L R G L +A
Sbjct: 324 PDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARD 383
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P + D ++ L+ C FH NVE+ E V + +E+E G YVL+ NI + G
Sbjct: 384 MVEKMPMK-PDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASG 442
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
R+ A +R +M E+ K PG S V
Sbjct: 443 RHASAREIRNLMREKGVEKTPGCSNV 468
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 224/416 (53%), Gaps = 57/416 (13%)
Query: 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82
H + ++ ++ Y+ ++ ++A L+ Q+++ + L + FT++ ++++C ++
Sbjct: 206 HDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV--------LPNQFTFASVLQSCASIE 257
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
LG Q+H + KVG +V+V+ AL+++Y G L +S KLF ELP RN VTWN MI
Sbjct: 258 NLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIV 317
Query: 143 GLVKWGELEYARSLFEEM-PCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
G V+ G+ + A SL++ M C+ + SE+T +VL A
Sbjct: 318 GYVQSGDGDKALSLYKNMLECQ----------------------VQASEVTYSSVLRACA 355
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A+ IH K ++ D+ V N LID YAKCG I +A +F+ +S ++ +S
Sbjct: 356 SLAAMELGTQIHSLSLKTIYDK-DVVVGNALIDMYAKCGSIKNARLVFDMLS--ERDEIS 412
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W ++ISG++MHG+ A++ F+ MQ+ PN++TF+S+L+ACS+ GL
Sbjct: 413 WNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMV 472
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C+V +LGR+G L++A K+ IP E +V V R LLGAC H +V++
Sbjct: 473 QDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLE-PNVKVWRALLGACVIHNDVDL 531
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G +++L+++ + +VL+ NI A R+ +R+ M + K PG S +
Sbjct: 532 GIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWI 587
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 153/327 (46%), Gaps = 53/327 (16%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT++ +++ C+ L ++G +H + K ++ +YV L+++Y G D ++F+E
Sbjct: 143 FTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEE 202
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+P+ +++ W+ MI+ + + A LF +M A P
Sbjct: 203 MPKHDVIPWSFMISRYAQSNQSREAVELFGQM---------------------RRAFVLP 241
Query: 189 SEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
++ T +VL + ++ N QL +H + K G + ++ VSN L+D YAKCG + ++
Sbjct: 242 NQFTFASVLQSC---ASIENLQLGKQVHCHVLKVGLDG-NVFVSNALMDVYAKCGRLDNS 297
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC- 304
+KLF + + +N V+W ++I G+ G G A+ ++ M + ++ + VT+ SVL AC
Sbjct: 298 MKLF--MELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACA 355
Query: 305 SHGGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
S + G L+DM + G ++ A ++ + SE D +
Sbjct: 356 SLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNA-RLVFDMLSE-RDEISW 413
Query: 345 RILLGACSFHGNVEMGERVTRKVLEME 371
++ S HG V + + + E E
Sbjct: 414 NAMISGYSMHGLVGEALKAFQMMQETE 440
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 45/292 (15%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
+ F ++ +++ V++ L LHA I K+G +S+ +V TAL++ Y G + + +
Sbjct: 39 LNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQA 98
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + +++V+W M+ + + + LF EM RM N
Sbjct: 99 FDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEM----------------RMVGFN--- 139
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P+ T VL A A + +HG K + D+ V L+D Y K G
Sbjct: 140 --PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYE-MDLYVGVGLLDLYTKFGDANDV 196
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
L++FE++ + +++ W+ +IS +A + AVE F +M++ + PN+ TF SVL +C+
Sbjct: 197 LRVFEEMP--KHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCA 254
Query: 306 -----HGGLHYGC----------------LVDMLGRAGRLEQAEKIALGIPS 336
G C L+D+ + GRL+ + K+ + +P+
Sbjct: 255 SIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPN 306
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 23/174 (13%)
Query: 160 MPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
MP RN VS+ ++ GY + +R + E + +L +
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60
Query: 210 QLIHGYGEKRGF--NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+H K G NAF V LID YA CG + SA + F+ I+ K++VSWT +++
Sbjct: 61 YSLHACIYKLGHESNAF---VGTALIDAYAVCGSVNSARQAFDAIAC--KDMVSWTGMVA 115
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC------SHGGLHYGCLV 315
+A + + +++ F M+ VG PN TF VL AC S G +GC++
Sbjct: 116 CYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVL 169
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 198/387 (51%), Gaps = 47/387 (12%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P+ D F ++ ++ V + T+ + ++ ++ V N A++ YV ++ +
Sbjct: 273 PIRDVFAWTAMVSGFVQNGMLDEATR---IFEEMPEKNEVSWN-AMIAGYVQSQQIEKAR 328
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT------- 176
+LFD++P RN +WN M+TG + G ++ A+ LF+EMP R+ +SW ++ GY
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388
Query: 177 ------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
+M R G + L+ I A+ + +HG K GF I N
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEI---AALELGKQLHGRLVKAGFQTGYI-AGN 444
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+ Y KCG I A +FEDI+ K++VSW ++I+G+A HG GK A+ FE M K+ +
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDIT--EKDIVSWNTMIAGYARHGFGKEALALFESM-KMTI 501
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ VT + VL+ACSH GL HY C++D+LGRAGRL++A
Sbjct: 502 KPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P D LLGA HG+ E+GE+ KV EME N G YVL+ N+ A
Sbjct: 562 NLMKSMPF-YPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ + +R M ++ K PG S V
Sbjct: 621 GRWREVREMRSKMRDKGVKKVPGYSWV 647
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 42/214 (19%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+++ Y+S + K+F+++P+R+L++WNVM++G VK G L AR+LF +MP ++VVS
Sbjct: 96 AMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS 155
Query: 168 WTGILDGYTRMNRSNGASTEP----------SEITILAVLPAIWQNGAVRNCQ------- 210
W +L G+ + NG E +EI+ +L A QNG + + +
Sbjct: 156 WNAMLSGFAQ----NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKM 211
Query: 211 ---------LIHGYGEKRG-------FNAFDIRVS---NCLIDTYAKCGCIFSALKLFED 251
L+ GY K+ F+ +R N +I YA+ G + A +LFE+
Sbjct: 212 DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEE 271
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ + +++ +WT+++SGF +GM A FE M
Sbjct: 272 LPI--RDVFAWTAMVSGFVQNGMLDEATRIFEEM 303
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 55/268 (20%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
++ Y G L ++ +LF+ELP R++ W M++G V+ G L+ A +FEEMP +N VSW
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSW 311
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
++ GY + + A + +P+ R +++
Sbjct: 312 NAMIAGYVQSQQIEKAR------ELFDQMPS-------------------RNTSSW---- 342
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N ++ YA+CG I A LF+++ +++ +SW ++ISG+A G + A+ F +M++
Sbjct: 343 -NTMVTGYAQCGNIDQAKILFDEMP--QRDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399
Query: 289 GLKPNRVTFLSVLNACS-----------HG-----GLHYG-----CLVDMLGRAGRLEQA 327
G NR L++C+ HG G G L+ M G+ G +E+A
Sbjct: 400 GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHG 355
+ I + D+V ++ + HG
Sbjct: 460 FDVFEDITEK--DIVSWNTMIAGYARHG 485
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 105/250 (42%), Gaps = 55/250 (22%)
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+ ++V WN I+ ++ G+ E A S+F M R+ V++ ++ GY N+ + A
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR----- 111
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+ +P D+ N ++ Y K G + +A LF
Sbjct: 112 -KVFEKMP------------------------DRDLISWNVMLSGYVKNGNLSAARALFN 146
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-- 308
+ K++VSW +++SGFA +G + A + F++M L N +++ +L+A G
Sbjct: 147 QMP--EKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRI 200
Query: 309 ---------------LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
+ + CL+ R RL+ A + +P + D + I++ +
Sbjct: 201 EDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP--VRDKISWNIMITGYAQ 258
Query: 354 HGNVEMGERV 363
+G + R+
Sbjct: 259 NGLLSEARRL 268
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 207/397 (52%), Gaps = 50/397 (12%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
H+ L P D++T ++++ C L +LG +H SK+G ++V +L+ MY G
Sbjct: 98 HNGLGP--DNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGD 155
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ + +FDE+P + V+W+VMI+G K G+++ AR F+E P ++ W ++ GY +
Sbjct: 156 VIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQ- 214
Query: 179 NRSNGASTE--------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
N E P E +++L A GA+ IH Y ++ +
Sbjct: 215 ---NSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTV-SL 270
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
IR+S L+D YAKCG + A +LF+ S+ +++V W ++ISG AMHG G +A++ F
Sbjct: 271 SIRLSTSLLDMYAKCGNLELAKRLFD--SMPERDIVCWNAMISGLAMHGDGASALKMFSE 328
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M+K G+KP+ +TF++V ACS+ G+ HYGCLVD+L RAG
Sbjct: 329 MEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAG 388
Query: 323 RLEQAEKIALGIPSE----ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
+A + I S + + R L AC HG ++ ER +++L +E + G Y
Sbjct: 389 LFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRLEN-HSGVY 447
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VL+ N+ A G++ DA R+R +M + K PG S V
Sbjct: 448 VLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSV 484
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 204/382 (53%), Gaps = 37/382 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKL 125
+S T ++ C L G ++ K G + ++ + AL++M+ S G + + +
Sbjct: 238 NSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGV 297
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FDE+ R++++W ++TG ++ AR F++MP R+ VSWT ++DGY RMNR
Sbjct: 298 FDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVL 357
Query: 186 T----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
T +P E T++++L A GA+ + Y +K D + N LID
Sbjct: 358 TLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKN-DTFIGNALIDM 416
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y KCG + A K+F ++ ++K+ +WT++I G A +G G+ A+ F M + + P+ +
Sbjct: 417 YFKCGNVEKAKKIFNEM--QKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEI 474
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
T++ V+ AC+H GL HYGC+VD+LGRAG L++A ++ +
Sbjct: 475 TYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMN 534
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + + +V LLGAC H NV++ E ++LE+E NG YVL+ NI A ++ +
Sbjct: 535 MPVK-PNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKN 593
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+R++M ER K PG SL+
Sbjct: 594 LHNVRKMMMERGIKKIPGCSLM 615
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 150/358 (41%), Gaps = 82/358 (22%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ YS + + LYK + H+ P D FT+ FL++
Sbjct: 101 FIWNTMIKGYSRINCSESGVSLYKLM---LVHNIKP-----DGFTFPFLLKGFTKDMALK 152
Query: 86 LGTQL--HAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
G L HAVI GF S+++V ++++ G + + K+FD +VTWNV+++
Sbjct: 153 YGKVLLNHAVIH--GFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLS 210
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G ++ E ++ LF EM P+ +T++ +L A +
Sbjct: 211 GYNRFKRYEESKRLFIEM-------------------EKKCECVSPNSVTLVLMLSACSK 251
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED----------- 251
+ + I+ K G ++ + N LID +A CG + +A +F++
Sbjct: 252 LKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTS 311
Query: 252 ----------ISVERK--------NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
I + RK + VSWT++I G+ K + F MQ +KP+
Sbjct: 312 IVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPD 371
Query: 294 RVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
T +S+L AC+H G L G L+DM + G +E+A+KI
Sbjct: 372 EFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKI 429
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++ YAR +F+E+P +V W ++ GY+R+N S + +P T +L
Sbjct: 83 GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
++ A++ +++ + GF ++ V I ++ CG + A K+F+ +
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD--MGDGW 200
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNACS 305
+V+W ++SG+ + + F M+K + PN VT + +L+ACS
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACS 250
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 183/324 (56%), Gaps = 38/324 (11%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+++ YV +G + D+ KLFDE+PERN+V+W+ M+ G K G++E AR LF++MP +N+VSW
Sbjct: 224 MLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSW 283
Query: 169 TGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T I+ G+ ++ A + T++++L A ++G + + IH +
Sbjct: 284 TIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKN 343
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
F +SN L+D YAKCG + A +F DI + K++VSW +++ G AMHG G A
Sbjct: 344 NNFKC-TTEISNALVDMYAKCGRLNIAYDVFNDI--KNKDVVSWNAMLQGLAMHGHGVKA 400
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+E F+RM++ G PN+VT + VL AC+H GL HYGC+VD
Sbjct: 401 LELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVD 460
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+LGR GRLE+A ++ +P + ++ LLGAC H VE+ V ++E+E + G
Sbjct: 461 LLGRKGRLEEAIRLIRNMPMA-PNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSG 519
Query: 377 DYVLMYNILAGVGRY--VDAERLR 398
++ ++ NI A G + V RLR
Sbjct: 520 NFSMLSNIYAAAGDWNCVANTRLR 543
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 171/354 (48%), Gaps = 66/354 (18%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+NT++ +S P +AF + +Q+ ++ D+FT+ FL++ C + +
Sbjct: 85 LYNTMIRAHSHNSQPSQAFATFFAMQRDGHYA--------DNFTFPFLLKVCTGNVWLPV 136
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGF--LKDSSKLFDEL-PERNLVTWNVMITG 143
+HA I K GF S V+V +L++ Y G + + KLF + R++V+WN MI+G
Sbjct: 137 IESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISG 196
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
L K G E AR +F+EMP ++ +SW +LDGY ++ + + A + +P +
Sbjct: 197 LAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDA------FKLFDEMP---ER 247
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
V ++ G Y K G + A LF+ + V KNLVSWT
Sbjct: 248 NVVSWSTMVLG---------------------YCKAGDMEMARMLFDKMPV--KNLVSWT 284
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
I+SGFA G+ + A+ F++M+K LK + T +S+L AC+ GL
Sbjct: 285 IIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNN 344
Query: 310 HYGC-------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
++ C LVDM + GRL A + I ++ DVV +L + HG+
Sbjct: 345 NFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNK--DVVSWNAMLQGLAMHGH 396
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 107/251 (42%), Gaps = 24/251 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D+ T ++ C LG ++HA I F+ ++ ALV+MY G L + +
Sbjct: 313 LDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDV 372
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
F+++ +++V+WN M+ GL G A LF+ M + G S
Sbjct: 373 FNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRM-------------------KEEGFS 413
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P+++T++ VL A G + + E+ ++ C++D + G + A
Sbjct: 414 --PNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEA 471
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++L ++ + N + W +++ MH + A E + + V L+P S+L+
Sbjct: 472 IRLIRNMPMA-PNAIIWGTLLGACRMHNAVELAREVLDHL--VELEPTDSGNFSMLSNIY 528
Query: 306 HGGLHYGCLVD 316
+ C+ +
Sbjct: 529 AAAGDWNCVAN 539
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 24/158 (15%)
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGC--IFSALKLFEDISVERKNLVSWTSIISGF 269
+H EK GF + D+ V N LID+Y+KCG I +A KLF + R+++VSW S+ISG
Sbjct: 140 VHAQIEKFGFMS-DVFVPNSLIDSYSKCGSCGISAAKKLFVSMGA-RRDVVSWNSMISGL 197
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329
A G+ + A + F+ M P + G+ + ++D + G+++ A K
Sbjct: 198 AKGGLYEEARKVFDEM------PEK------------DGISWNTMLDGYVKVGKMDDAFK 239
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
+ +P E V ++LG C G++EM + K+
Sbjct: 240 LFDEMP-ERNVVSWSTMVLGYCK-AGDMEMARMLFDKM 275
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 194/376 (51%), Gaps = 50/376 (13%)
Query: 65 LFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG--FLKD 121
L + FT+ FL++ C L +P +G Q HA K GF + YV+ L++MY G FL D
Sbjct: 128 LPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGD 187
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ +FD + + ++VTW+ MI G V+ G A LF EM
Sbjct: 188 ARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREM--------------------- 226
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+ P E+T++ VL A GA+ + + + E+ G + + N LID AKCG
Sbjct: 227 QASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGK-SVTLCNALIDALAKCGD 285
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A+ +F+ +E + +VSWTS+I AM G GK AV FE M+ G++P+ V F+ VL
Sbjct: 286 VDGAVAVFQ--GMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVL 343
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
ACSH G+ HYGC+VDM GRAG +E+A + +P +
Sbjct: 344 TACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMK-P 402
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ ++ R L+ AC HG +E+GE +TR +L + +YV++ N+ A R+ + +RR
Sbjct: 403 NPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRR 462
Query: 400 VMDERNALKFPGRSLV 415
M +R K PG SLV
Sbjct: 463 EMSKRGIKKVPGCSLV 478
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 208/384 (54%), Gaps = 42/384 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVIS--KVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
D FT L+ +C L G +H + K S++ + AL++MYV ++ + +
Sbjct: 163 DEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALR 222
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
F L E+++V+WN+++ G K GELE AR F +MPCR++VSW ++ GY R + A
Sbjct: 223 TFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYA--CRGDFA 280
Query: 185 STE------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
S + P +T+++++ A ++GA+ + HG+ + D + + L
Sbjct: 281 SVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIK-LDAFLGSAL 339
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID Y KCG I A ++F++I+ +K++ WT++I+G A HG G A+E F MQ+ + P
Sbjct: 340 IDMYCKCGSIERASRVFKEIN--KKDVTVWTTMITGLAFHGYGSKALELFSEMQE-DVSP 396
Query: 293 NRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIA 331
+ VTF+SVL+ACSH GL HYGCLVD+L R+GRL +A+ I
Sbjct: 397 DDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDII 456
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P + + + +L AC G+VE+ E +R++L ++ G Y L+ NI A GR+
Sbjct: 457 DQMPMKPSR-SIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRW 515
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
++++R M+ R K G S V
Sbjct: 516 SYSKKIRETMESRGVKKTAGCSSV 539
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/439 (23%), Positives = 185/439 (42%), Gaps = 97/439 (22%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKK--AFLLYKQLQQIYTHSH 59
P + ++ + +H +L ++NTL+ +S S KK +F LY L +
Sbjct: 13 PDNLDLAITLFNHFTPNPNLF----IYNTLISAFS---SLKKIESFYLYNVL---LSSGE 62
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
P D T +L++ +++ + Q+H G S Y+ L+ +Y+ G +
Sbjct: 63 CP-----DKQTLLYLLQA---VNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLV 114
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ + ++F+++P ++V++NVMI G K G A LF EM
Sbjct: 115 RLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMV------------------ 156
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAK 238
G EP E TIL +L + Q G V+ + +HG+ E+R + ++ + N L+D Y K
Sbjct: 157 ---GLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVK 213
Query: 239 CGCIFSALKLF-----EDI------------------------SVERKNLVSWTSIISGF 269
C + AL+ F +DI + +++VSW S+++G+
Sbjct: 214 CQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGY 273
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG---------------- 312
A G + E M + P+ VT +S+++A + G L G
Sbjct: 274 ACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDA 333
Query: 313 ----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
L+DM + G +E+A ++ I + DV V ++ +FHG G +
Sbjct: 334 FLGSALIDMYCKCGSIERASRVFKEINKK--DVTVWTTMITGLAFHG---YGSKALELFS 388
Query: 369 EMERGNGGDYVLMYNILAG 387
EM+ D V ++L+
Sbjct: 389 EMQEDVSPDDVTFVSVLSA 407
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 41/387 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T + ++ C TL+ G Q+HA V+ F++ + + ALV+MY G + ++ +
Sbjct: 256 DEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCV 315
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD +P RN V+ M++G K ++ ARS+F + +++VSW ++ GYT+ + A
Sbjct: 316 FDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEAL 375
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF-----NAFDIRVSN 230
S P+ T +L A + + H + K GF DI V N
Sbjct: 376 GLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGN 435
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LID Y KCG + L++FE++ VE K+ VSW ++I G+A +G G A+E F++M + G
Sbjct: 436 SLIDMYMKCGSVEEGLRVFENM-VE-KDHVSWNTMIIGYAQNGYGMEALELFQKMLESGE 493
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ VT + L ACSH GL HY C+VD+LGRAG LE+A+
Sbjct: 494 KPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAK 553
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + D VV LL AC H N+ +G+ V K+ E++ + G YVL+ N+ + +
Sbjct: 554 DLIESMPKQ-PDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSEL 612
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ DA +R++M R +K PG S +
Sbjct: 613 GRWGDAVSVRKLMRRRGVVKQPGCSWI 639
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 147/339 (43%), Gaps = 62/339 (18%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
+ + +++ + C L LG Q+H +ISK + V++ + L++ Y G + + +
Sbjct: 153 VLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARR 212
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD + E+N+V+WN +IT + G A L+ + RM
Sbjct: 213 VFDGMEEKNVVSWNCLITCYEQNGPAIEA------------------LEAFGRMTE---L 251
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG---- 240
+P E+T+ +V+ A A + IH K D+ + N L+D YAKCG
Sbjct: 252 GFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNE 311
Query: 241 --CIFSALKLFEDIS-----------------------VERKNLVSWTSIISGFAMHGMG 275
C+F + + +S +++K++VSW ++I+G+ +G
Sbjct: 312 ARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGEN 371
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI- 334
+ A+ F +++ + P TF ++LNA ++ L D+ GR + + G
Sbjct: 372 EEALGLFRMLKRESVCPTHYTFGNLLNASAN-------LADL--ELGRQAHSHVVKHGFR 422
Query: 335 --PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
E D+ V L+ G+VE G RV ++E +
Sbjct: 423 FQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKD 461
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 55/270 (20%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DS ++ L+ CV L +H + + F V++ L+++Y G+L + K+F
Sbjct: 23 DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82
Query: 127 DELPERNL-------------------------------VTWNVMITGLVKWGELEYARS 155
D + ERN+ +WN MI G + E A
Sbjct: 83 DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEA-- 140
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
LD + RM+R + + S + L A + ++ IHG
Sbjct: 141 ----------------LDWFVRMHRDDFVLNDYS---FGSGLSACSRLKDLKLGAQIHGL 181
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
K + + D+ + + LID Y+KCG + A ++F+ +E KN+VSW +I+ + +G
Sbjct: 182 ISKSKY-SLDVFMGSGLIDFYSKCGLVGCARRVFD--GMEEKNVVSWNCLITCYEQNGPA 238
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACS 305
A+E F RM ++G KP+ VT SV++AC+
Sbjct: 239 IEALEAFGRMTELGFKPDEVTLASVVSACA 268
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 200/379 (52%), Gaps = 36/379 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D S ++ C + G +H I + ++ +ALV MY S G + + LF
Sbjct: 222 DEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLF 281
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
+++ +NLV M+TG K G++E ARS+F +M +++V W+ ++ GY
Sbjct: 282 EKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALN 341
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
N +P ++T+L+V+ A GA+ + IH + +K GF + ++N LI+ Y
Sbjct: 342 LFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGG-ALPINNALIEMY 400
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A ++F+ + RKN++SWT +IS FAMHG +A+ F +M+ ++PN +T
Sbjct: 401 AKCGSLERARRIFDKMP--RKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGIT 458
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL ACSH GL HYGC+VD+ GRA L +A ++ +
Sbjct: 459 FVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAM 518
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P +V++ L+ AC HG +E+GE +++LE++ + G +V + NI A R+ D
Sbjct: 519 PLA-PNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDV 577
Query: 395 ERLRRVMDERNALKFPGRS 413
++R++M + K G S
Sbjct: 578 GQVRKLMKHKGISKERGCS 596
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 176/383 (45%), Gaps = 82/383 (21%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L N L S ++ P+K L+Y++++ T + D F++ L++ +
Sbjct: 87 THLCNRFLRELSRSEEPEKTLLVYERMR---TQGLA-----VDRFSFPPLLKALSRVKSL 138
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G ++H + +K+GF S +V T LV MY + G + ++ +FD++ R++VTW++MI G
Sbjct: 139 VEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGY 198
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ G A LFEEM NV EP E+ + VL A + G
Sbjct: 199 CQSGLFNDALLLFEEMKNYNV---------------------EPDEMMLSTVLSACGRAG 237
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------- 255
+ ++IH + + D + + L+ YA CG + AL LFE ++ +
Sbjct: 238 NLSYGKMIHDFIMENNI-VVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMV 296
Query: 256 --------------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
+K+LV W+++ISG+A + A+ F MQ +G+KP++V
Sbjct: 297 TGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQV 356
Query: 296 TFLSVLNACSHGG-------LHY--------------GCLVDMLGRAGRLEQAEKIALGI 334
T LSV+ AC+H G +H L++M + G LE+A +I +
Sbjct: 357 TMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKM 416
Query: 335 PSEITDVVVRRILLGACSFHGNV 357
P + +V+ ++ A + HG+
Sbjct: 417 PRK--NVISWTCMISAFAMHGDA 437
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 201/383 (52%), Gaps = 36/383 (9%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
R + D + ++ TC G +H+ + V+ AL+NMY S ++ +
Sbjct: 5 RVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMA 64
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
KL++ + E+ +V M+ G K G++E A S+F MP ++VVSW+ ++ GY ++
Sbjct: 65 EKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPM 124
Query: 183 GA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
A +P EIT+L+V+ A GA+ + IH + E + + N L
Sbjct: 125 EALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKI-LPIGNAL 183
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID ++KCG + AL +F ++ +KN+V+WTSII+ AMHG G++A+ FE M+ G++P
Sbjct: 184 IDMFSKCGSLTLALDVFN--AMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQP 241
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
N VTFL +L AC H GL HYGC+VD+LGRA L QA +
Sbjct: 242 NGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADL 301
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+ +VV+ LL AC HG++E+G +K+LE++ +GG VL+ NI A G
Sbjct: 302 IQSMHLR-PNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGN 360
Query: 391 YVDAERLRRVMDERNALKFPGRS 413
+ D + +R VM+ + K G S
Sbjct: 361 WNDVKEVRGVMEVQGTWKKKGCS 383
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 220/420 (52%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ +S + +P+K+ +Y QI SP D TY FL+++ LS +G
Sbjct: 822 WNFVIRGFSNSKNPEKSIRVY---IQILRSGFSP-----DHMTYPFLLKSSSRLSNREIG 873
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH + K G + ++++ L++MY S + KLFDE+P +NLVTWN ++ K
Sbjct: 874 GSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNLVTWNSILDSYAKS 933
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
G++ AR +F+EM R+VV+W+ ++DGY + N A S++ +E+T+++V
Sbjct: 934 GDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSV 993
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A G + +++H Y + + LID YAKCG I A +F SV++
Sbjct: 994 LCACAHLGELNRGKVVHRYILDVHL-PLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKK 1052
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+ + W ++I G A HG + ++ F +M++ + P+ +TFL +L ACSHGGL
Sbjct: 1053 TDALMWNAMIGGLASHGFIRESLLLFHKMRESEIDPDEITFLCLLAACSHGGLVKEAWHF 1112
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG ++ A + + T V+ + G C HG
Sbjct: 1113 FTSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMLIKPTGSVLGALFNG-CINHG 1171
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+E+ E V +K++E++ N G YV + N+ A ++ A +R M+++ K G S++
Sbjct: 1172 NLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFGAARSMREAMEKKGVKKIAGHSII 1231
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 36/228 (15%)
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYA 153
GF+ + T LV G D+ K D++ R++V++ I GL++ ++
Sbjct: 539 GFEPWIKHTTCLVKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIRNEGVDRG 598
Query: 154 RSLFEEMP----CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
LF + C +V+++ ++ + R+ A +E+ + P++
Sbjct: 599 LELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSV--------- 649
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN--LVSWTSIIS 267
N +ID + K G I L + + KN ++++TS+I
Sbjct: 650 -----------------ATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIH 692
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315
G A+ + M+ PNR+TF++++ + G LV
Sbjct: 693 GLCASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALV 740
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 220/424 (51%), Gaps = 51/424 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQ-QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+N++++ + SP KA L+K+++ + SH T ++ C +
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASH---------VTMVGVLSACAKIRNLEF 250
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+ + I + ++ + A+++MY G ++D+ +LFD + E++ VTW M+ G
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILA 195
+ E AR + MP +++V+W ++ Y + + N A + + ++IT+++
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L A Q GA+ + IH Y +K G + V++ LI Y+KCG + + ++F SVE
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIR-MNFHVTSALIHMYSKCGDLEKSREVFN--SVE 427
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++++ W+++I G AMHG G AV+ F +MQ+ +KPN VTF +V ACSH GL
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 487
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKI--ALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGR+G LE+A K A+ IP + V LLGAC
Sbjct: 488 LFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS---VWGALLGAC 544
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H N+ + E ++LE+E N G +VL+ NI A +G++ + LR+ M K PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 412 RSLV 415
S +
Sbjct: 605 CSSI 608
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 189/434 (43%), Gaps = 89/434 (20%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
++ +NTL+ Y A P ++ L + S S P + +T+ FLI+ +S
Sbjct: 94 NSFAWNTLIRAY--ASGPDPVLSIWAFLDMV---SESQCYP--NKYTFPFLIKAAAEVSS 146
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+LG LH + K S V+V +L++ Y S G L + K+F + E+++V+WN MI G
Sbjct: 147 LSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 206
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V+ G + A LF++M +V + S +T++ VL A
Sbjct: 207 FVQKGSPDKALELFKKMESEDV---------------------KASHVTMVGVLSAC--- 242
Query: 204 GAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI-------- 252
+RN + + Y E+ N ++ ++N ++D Y KCG I A +LF+ +
Sbjct: 243 AKIRNLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 253 ---------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGL 290
S+ +K++V+W ++IS + +G A+ F +Q + +
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 291 KPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEK 329
K N++T +S L+AC+ G L G L+ M + G LE++ +
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-RGNGGDYVLMYNILAGV 388
+ + E DV V ++G + HG + K+ E + NG + ++ +
Sbjct: 422 VFNSV--EKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479
Query: 389 GRYVDAERLRRVMD 402
G +AE L M+
Sbjct: 480 GLVDEAESLFHQME 493
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 35/222 (15%)
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-----------MNRSNGASTEPS 189
+ L + LEYAR +F+E+P N +W ++ Y ++ + + P+
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ T ++ A + ++ Q +HG K + D+ V+N LI Y CG + SA K+F
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS-DVFVANSLIHCYFSCGDLDSACKVF 189
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GG 308
+++ K++VSW S+I+GF G A+E F++M+ +K + VT + VL+AC+
Sbjct: 190 --TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 309 LHYG--------------------CLVDMLGRAGRLEQAEKI 330
L +G ++DM + G +E A+++
Sbjct: 248 LEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 289
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 220/410 (53%), Gaps = 54/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ ++ +++P A L+ Q+ H+ S + P D+ T+ FL + L +LG
Sbjct: 103 WNTMIRGFAESENPSPAVELFSQM-----HAASSILP--DTHTFPFLFKAVAKLMDVSLG 155
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+V+ + GF S +V +LV+MY GF + + ++F+ + R+ V WN +I G
Sbjct: 156 EGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALN 215
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +L+ EM V EP T++++L A + GA+
Sbjct: 216 GMPNEALTLYREMGSEGV---------------------EPDGFTMVSLLSACVELGALA 254
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H Y K G + SN L+D Y+KCG A K+F+++ E +++VSWTS+I
Sbjct: 255 LGERVHMYMVKVGL-VQNQHASNALLDLYSKCGNFRDAQKVFDEM--EERSVVSWTSLIV 311
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G A++G+G A++ F +++ GLKP+ +TF+ VL ACSH G+
Sbjct: 312 GLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGIL 371
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
H+GC+VD+L RAG++ A +P + V+ R LLGAC+ HG++E+GE
Sbjct: 372 PRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVP-PNAVIWRTLLGACTIHGHLELGEVARA 430
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ +E+ + GD+VL+ N+ A R++D + +R++M + K PG SLV
Sbjct: 431 EIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLV 480
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 41/259 (15%)
Query: 72 SFLIRTCVTL-----SYPNLGTQLHAVISKVG-------FQSHVYVNTALVNMYVSLGFL 119
SF++R C++L S + Q+HA + G F H+ ALV++ + F
Sbjct: 31 SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIF--ALVSLSAPMSF- 87
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
++++F+++ N+ TWN MI G + A LF +M
Sbjct: 88 --AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQM------------------- 126
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+S P T + A+ + V + IH + GF++ V N L+ Y+
Sbjct: 127 -HAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRF-VQNSLVHMYSVF 184
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G SA ++FE +S ++ V+W S+I+GFA++GM A+ + M G++P+ T +S
Sbjct: 185 GFAESAYQVFEIMSY--RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVS 242
Query: 300 VLNACSH-GGLHYGCLVDM 317
+L+AC G L G V M
Sbjct: 243 LLSACVELGALALGERVHM 261
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/374 (34%), Positives = 192/374 (51%), Gaps = 50/374 (13%)
Query: 67 DSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG--FLKDSS 123
+ FT+ FL+++C L P++G Q HA K GF + YV+ L++MY G FL D+
Sbjct: 134 NKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDAR 193
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+F+ +P + VTW+ MI G V+ G A LF M V
Sbjct: 194 NVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGV------------------ 235
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P E+T++ VL A GA+ + + + E+ G + + N LIDT AKCG +
Sbjct: 236 ---RPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGK-SVTLCNALIDTLAKCGDVD 291
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A+ +FE +E + +VSWTS+I AM G GK AV FE M+ VG+ P+ V F+ VL A
Sbjct: 292 GAVAVFE--GMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTA 349
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
CSH G+ HYGC+VDM GRAG +EQ + +P + +
Sbjct: 350 CSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMK-PNP 408
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
++ R L+ AC HG +E+GE +TR +L + +YV++ N+ A R+ + +RR M
Sbjct: 409 IIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREM 468
Query: 402 DERNALKFPGRSLV 415
+R K PG SLV
Sbjct: 469 SKRGIKKVPGCSLV 482
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/422 (30%), Positives = 219/422 (51%), Gaps = 44/422 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+L+ ++ Y P+KA L++ ++++ L P D S ++ C L
Sbjct: 158 VLWTLIIRAYVCVTFPEKALELFRTMREV------GLTP--DMVAVSTVVSACGLLGDLG 209
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ +H I K G + +V++ L++ Y G L + + F E P +N+V WN MI V
Sbjct: 210 VAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILA 195
+ LE + LF+ MP R+VVSW ++ G+ R+ + A T P+ +T+L+
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L A +GA+ IH Y +K N D + + LID Y+KCG I A+++FE+ +
Sbjct: 330 TLSACASHGALDTGAWIHAYVDKNDMNR-DGSLDSSLIDMYSKCGDIDKAVQIFEEST-- 386
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
R++L +WTSI+ G AMHG G+ A+ F +M++ ++P+ VT + VL+AC+H GL
Sbjct: 387 RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWW 446
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYG +VD+LGR G L++A + +G+P E + ++ L AC
Sbjct: 447 YFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANE-IIWGAFLSACRV 505
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
H NVE+GE R++L + + V++ N+ A ++ + LR+ + ++ K PG S
Sbjct: 506 HNNVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCS 565
Query: 414 LV 415
+
Sbjct: 566 SI 567
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 137/319 (42%), Gaps = 74/319 (23%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
LRP + T+ +L++ V+ G ++HA + + GF +V+ AL+ YV+ G +
Sbjct: 87 LRP--NGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGK 144
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
++FDE+ + LV W ++I V E A LF M R V G T
Sbjct: 145 GRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM--REV--------GLT----- 189
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P + + V+ A G + + +H + EK G D VS+ LI TY +CG
Sbjct: 190 ------PDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEV-DAFVSSTLISTYGECGS 242
Query: 242 IFSALKLFEDI--------------SVERKNL---------------VSWTSIISGFAMH 272
+ A + F++ SVE NL VSW S+I GFA
Sbjct: 243 LDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARI 302
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGLHYGC------------------ 313
G + A+ F M+ G+ PN +T LS L+AC SHG L G
Sbjct: 303 GQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLD 362
Query: 314 --LVDMLGRAGRLEQAEKI 330
L+DM + G +++A +I
Sbjct: 363 SSLIDMYSKCGDIDKAVQI 381
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 222/457 (48%), Gaps = 81/457 (17%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ L NT+L Y+ A +A LY +Q++ ++FTY F+++ C +
Sbjct: 97 SFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVG--------VNNFTYPFVLKVCASELGA 148
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT-- 142
G +H + + GF S ++V ALV+MY G + D+ ++FD + R++V W MIT
Sbjct: 149 VFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLY 208
Query: 143 -----------------------------------GLVKWGELEYARS--LFEEMPCRNV 165
G + G + +R+ +F+ M RN
Sbjct: 209 EQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNG 268
Query: 166 VSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
+SW +L GYT+ N+ + +P+ +T L ++ A G+ + +H +
Sbjct: 269 ISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNF 328
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
+ D + N ++D Y KCG + +A+++F + + +++ SW +ISG+ +HG G
Sbjct: 329 VISSKMD-IDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHG 387
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCL 314
K A+E F RMQ G++PN +TF S+L+ACSH GL HY C+
Sbjct: 388 KEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACM 447
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VDMLGRAG L +A ++ IPS +D V +LL AC HGN E+GE + ++E +
Sbjct: 448 VDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLL-ACRIHGNTELGEIAANNLFQLEPEH 506
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
G YVLM NI A ++ + E +R+ M R LK P
Sbjct: 507 TGYYVLMSNIYAASNKWKEVEMVRQNMKSR-GLKKPA 542
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 193/370 (52%), Gaps = 46/370 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T+ L++ C G Q HAV K+G H YV L+NMY G + + F
Sbjct: 132 DTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTF 191
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+V++N MI V+ A LF EM + +
Sbjct: 192 GRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGL--------------------- 230
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+ +T+++VL A GA++ + +H Y K G + ++VS L+D YAKCG + A+
Sbjct: 231 NPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSL-VKVSTALVDMYAKCGSLEDAI 289
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+ +E ++ +W+ +I +A HG G+ A+ FE M+K G+KP+ +TFL +L ACSH
Sbjct: 290 AVFQ--GMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSH 347
Query: 307 GGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+ D+L R+G+LE+A K +P T ++ R
Sbjct: 348 SGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWR- 406
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL AC HG+VE+G+RV ++LE++ +GGDYV+ N+ A G + + R+R++M ++
Sbjct: 407 TLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKG 466
Query: 406 ALKFPGRSLV 415
+K PG S +
Sbjct: 467 VVKVPGCSSI 476
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 124/324 (38%), Gaps = 56/324 (17%)
Query: 58 SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
S +P PL + +R QLHA K G +H + T L+ + G
Sbjct: 21 SAAPQHPLLSHLPHCTSLRGL---------AQLHAAAVKAGLAAHPALVTRLLTLCTGPG 71
Query: 118 ----FLKDSSKLFDELPERNLVTW-NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
L + ++FD + + + W N ++ G YARS + S +
Sbjct: 72 AGPAHLAYARQVFDRVTQPSDAVWYNTLLRG--------YARSSSS-----SSSSSAAAV 118
Query: 173 DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+ RM A P T +++L A A + + H K G D V L
Sbjct: 119 RVFVRMLEEGVA---PDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDY-VRPTL 174
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
I+ YA+CG +A F + +VS+ ++I+ A+ F MQ GL P
Sbjct: 175 INMYAECGDARAARVTFG--RADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNP 232
Query: 293 NRVTFLSVLNACS-HGGLHYG--------------------CLVDMLGRAGRLEQAEKIA 331
VT +SVL+AC+ G L G LVDM + G LE A +
Sbjct: 233 TPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVF 292
Query: 332 LGIPSEITDVVVRRILLGACSFHG 355
G+ S D +++ A + HG
Sbjct: 293 QGMESR--DRQAWSVMIVAYANHG 314
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 206/388 (53%), Gaps = 38/388 (9%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
S ++P DS ++ C + G +H + G+ ++ TAL+NMY + G +
Sbjct: 216 SDMKP--DSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAM 273
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ K++D L ++L+ M++G K G ++ AR +F++M R++V W+ ++ GY +
Sbjct: 274 DLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESD 333
Query: 180 RSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
+ A + P +IT+L+V+ A GA+ IH Y ++ GF + V+
Sbjct: 334 QPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGR-ALSVN 392
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LID YAKCG + A ++FE++ RKN++SW+S+I+ FAMHG +A++ F RM++V
Sbjct: 393 NALIDMYAKCGNLVKAREVFENMP--RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVN 450
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
++PN VTF+ VL AC H GL HYGC+VD+ RA L +A
Sbjct: 451 IEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKA 510
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
++ +P +V++ L+ AC HG E+GE +++LE+E + G V++ NI A
Sbjct: 511 IELIETMPFA-PNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAK 569
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
R+ D +R+ M + K S +
Sbjct: 570 EKRWNDVGLIRKSMSYKGISKEKASSRI 597
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 187/425 (44%), Gaps = 82/425 (19%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
HT N LL S + P+K LY L+ I + D F++ L++ +S
Sbjct: 84 HTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFA-------LDRFSFPSLLKAVSKVSA 136
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
N G ++H + SK+GF ++ T L+ MY S + D+ LFD++ + V WN++I G
Sbjct: 137 FNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDG 196
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ G + A LFE+M + +P + + VL A
Sbjct: 197 YCQNGHYDDALRLFEDM---------------------RSSDMKPDSVILCTVLSACGHA 235
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------- 255
G + + IH + + G+ A D + LI+ YA CG + A K+++ +S +
Sbjct: 236 GNLSYGRTIHEFVKDNGY-AIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAM 294
Query: 256 ---------------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
++LV W+++ISG+A + A++ F+ M + P++
Sbjct: 295 LSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQ 354
Query: 295 VTFLSVLNACSHGG-------LH-------YG-------CLVDMLGRAGRLEQAEKIALG 333
+T LSV++ACSH G +H +G L+DM + G L +A ++
Sbjct: 355 ITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFEN 414
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-RGNGGDYVLMYNILAGVGRYV 392
+P + +V+ ++ A + HGN + ++ R++ E+ NG ++ + G
Sbjct: 415 MPRK--NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVE 472
Query: 393 DAERL 397
+ E+L
Sbjct: 473 EGEKL 477
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 201/381 (52%), Gaps = 36/381 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D FT L+ C +G +H + G + + + +ALV+MY G L + +
Sbjct: 210 LEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARR 269
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR------- 177
F+ +P +++V+W M+ K G + AR F+ MP RN+VSW ++ Y +
Sbjct: 270 CFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEA 329
Query: 178 ---MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
N+ P EIT++AVL A + G + +++H Y +N D+ + N L+D
Sbjct: 330 LDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNP-DVSLVNSLLD 388
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YAKCG + +A+ LF ++ +N+VSW II G AMHG + F M P+
Sbjct: 389 MYAKCGQVDTAISLFSEMC--NRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDG 446
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+++L+ACSHGGL HY C+VD+LGR G LE+A +
Sbjct: 447 ITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIK 506
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + DVVV LLGAC HGNV++G +V +++LE+E +GG +VL+ N+L ++
Sbjct: 507 EMPMK-PDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQWE 565
Query: 393 DAERLRRVMDERNALKFPGRS 413
D +RLR++M E K G S
Sbjct: 566 DMKRLRKLMKEWGTRKDMGVS 586
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 170/384 (44%), Gaps = 90/384 (23%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP--LFDSFTYSFLIRTCVTLSY 83
+++NT++ Y + P++A L++ + LR L + FT F+++ C
Sbjct: 78 VMYNTIIRAYCNSSCPREALRLHRGM----------LRRGILPNEFTLPFVVKACTIAQA 127
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+H V ++G V+V AL++ Y S G L DS + FDE+ +RN+V+WN MI G
Sbjct: 128 REHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGG 187
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ G+ SLF EM R G + E T++++L A Q
Sbjct: 188 YAQAGDTREVCSLFGEM-------------------RRQGFLED--EFTLVSLLIACSQE 226
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------- 255
G + +L+H G + D+ + + L+D Y KCG ++ A + FE + ++
Sbjct: 227 GNLEIGRLVHCRMLVSG-SRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSM 285
Query: 256 ---------------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
+N+VSW ++IS + G A++ + +MQ GL P+
Sbjct: 286 LCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDE 345
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+T ++VL+A G L G L+DM + G+++ A+
Sbjct: 346 ITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDT----AIS 401
Query: 334 IPSEIT--DVVVRRILLGACSFHG 355
+ SE+ +VV +++G + HG
Sbjct: 402 LFSEMCNRNVVSWNVIIGGLAMHG 425
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYT---------RMNRSN-GASTEPSEITILAVL 197
G L +AR LF+ +P + V + I+ Y R++R P+E T+ V+
Sbjct: 60 GVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVV 119
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A A + +HG + G + V N L+ +YA G + + + F+++ V+R
Sbjct: 120 KACTIAQAREHALAVHGVALRLGLVG-QVFVGNALLHSYASAGSLGDSRRFFDEM-VDR- 176
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG---- 312
N+VSW S+I G+A G + F M++ G + T +S+L ACS G L G
Sbjct: 177 NVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVH 236
Query: 313 ----------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
LVDM G+ G L A + +P I VV +L A + HG+
Sbjct: 237 CRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMP--IKSVVSWTSMLCAQTKHGS 294
Query: 357 V 357
V
Sbjct: 295 V 295
>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 589
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 194/375 (51%), Gaps = 50/375 (13%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P D+ + SF ++ S + QLHA++ ++G + V + T L++ Y G L +
Sbjct: 109 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 168
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSL-------FEEMPCRNVVSWTGILDGYT 176
K+FDE+ R++ TWN ++ GL + E A +L F+E+P R
Sbjct: 169 KVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSRE------------ 216
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP+E+TI+AVL A Q G +++ +H + +K G + ++RV N LID Y
Sbjct: 217 ----------EPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDR-NVRVCNSLIDMY 265
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+KCG + AL +F I E + LVS+ + I +MHG G A+ F+ M ++P+ VT
Sbjct: 266 SKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVT 324
Query: 297 FLSVLNACSHGGL------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+L+VL C+H GL HYG +VD+LGRAGRL +A + +P
Sbjct: 325 YLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP- 383
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D+V+ + LLGA HG VE+ E K+ E+ GDYVL+ N+ A R++D R+R
Sbjct: 384 ADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVR 443
Query: 399 RVMDERNALKFPGRS 413
M + K PG S
Sbjct: 444 DTMRSNDVRKVPGFS 458
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 215/440 (48%), Gaps = 75/440 (17%)
Query: 40 SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99
S + + LL + +++ TH+ L F + L V S + ++
Sbjct: 4 SLRDSSLLVAESRELITHAKCSTESLNQMFLFGMLCLMGVIASANKVFCEM--------V 55
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
+ +V + T+++N Y+ L + + FD PER++V WN MI+G ++ G + ARSLF++
Sbjct: 56 EKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQ 115
Query: 160 MPCRNVVSWTGILDGYTRMNR---------------------------SNGASTE----- 187
MPCR+V+SW +L+GY + NG +E
Sbjct: 116 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 175
Query: 188 ----------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
P++ T+ VL A + GA + +H YGE G+N D+ V N LID Y
Sbjct: 176 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 235
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG I A+++F+ I +R++L+SW ++I+G A HG G A+ F M+ G+ P++VTF
Sbjct: 236 KCGAIEIAMEVFKGI--KRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTF 293
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL AC H GL H GC+VD+L RAG L QA + +P
Sbjct: 294 VGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMP 353
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ D V+ LLGA + V++GE +++++E N ++V++ NI GR+ DA
Sbjct: 354 VK-ADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAA 412
Query: 396 RLRRVMDERNALKFPGRSLV 415
RL+ M + K G S +
Sbjct: 413 RLKVAMRDTGFKKEAGVSWI 432
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 219/395 (55%), Gaps = 53/395 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI------RT 77
+T +NTL+ Y+ + P + L Q++Q + + P D FT++FLI R
Sbjct: 59 NTFFYNTLIRGYAKSSIPSYSLHLVNQMRQ------NGVDP--DEFTFNFLIKARSRVRV 110
Query: 78 CVTLSYPNL--GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+ + P + ++H + K+GF SH++V AL+++Y + G + ++FDE ++V
Sbjct: 111 NINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVV 170
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------S 185
+W+ ++ V+ GELE AR +F++MP R+VVSWT ++ Y++ S A
Sbjct: 171 SWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKG 230
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P E+T+++V+ A G ++ +H Y ++ GF + + + N LID YAKCGC+ A
Sbjct: 231 VRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFR-WMVSLCNALIDMYAKCGCMDRA 289
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++F +S RK+LV+W S+IS A + + A F RM G+ P+ VTFL+VL A +
Sbjct: 290 WQVFNSMS--RKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYA 347
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
H GL HYGC+V+MLG+AG LE+A ++ +P D VV
Sbjct: 348 HVGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSND-VV 406
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
+LL AC HG+V MGERV +K+LE++ +GG Y
Sbjct: 407 WGVLLAACRKHGDVYMGERVVKKLLELKL-DGGYY 440
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 133/330 (40%), Gaps = 84/330 (25%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYV--SLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+HA G H + ++ G L + +LFD+LP N +N +I G K
Sbjct: 13 QIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAK 72
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA------- 199
Y+ L +M R NG +P E T ++ A
Sbjct: 73 SSIPSYSLHLVNQM-------------------RQNG--VDPDEFTFNFLIKARSRVRVN 111
Query: 200 IWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI------ 252
I +N V C IHG K GF++ + V N LI YA G A ++F++
Sbjct: 112 INRNLPLVVECDEIHGAVLKLGFSS-HLFVRNALIHLYAARGNPVVAWRVFDETVGVDVV 170
Query: 253 -------------SVER----------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
+ER +++VSWT+++S ++ + A+E + M G
Sbjct: 171 SWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKG 230
Query: 290 LKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAE 328
++P+ VT +SV++AC++ G L G L+DM + G +++A
Sbjct: 231 VRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAW 290
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVE 358
++ + + +V ++ AC+ + N E
Sbjct: 291 QVFNSMSRK--SLVTWNSMISACANNRNPE 318
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 198/387 (51%), Gaps = 45/387 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DSFT ++ C ++ G ++HA G + +V ALV MY LK + F
Sbjct: 276 DSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAF 335
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGILDG-------- 174
D + ER+ TWNV+I+G +LE ++L ++M NV +W GI+ G
Sbjct: 336 DGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNE 395
Query: 175 -----YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
+T M S S P T+ +LPA + + + +H + ++G+ D+ +
Sbjct: 396 LALRLFTEMQTS---SLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYE-LDVHIG 451
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
L+D YAKCG I A++++ IS NLVS ++++ +AMHG G + F M G
Sbjct: 452 AALVDMYAKCGSIKHAMQVYNRIS--NPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNG 509
Query: 290 LKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAE 328
+P+ VTFLSVL++C H G HY C+VD+L RAGRL++A
Sbjct: 510 FRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAY 569
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
++ IP + D V+ LLG C GNVE+GE ++E+E N G+YVL+ N+ A
Sbjct: 570 ELVKKIPRK-PDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYA 628
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ D +R R+++ +R K PG S +
Sbjct: 629 GRWHDLDRTRQMIKDRGMHKSPGCSWI 655
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 158/348 (45%), Gaps = 70/348 (20%)
Query: 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSH-SPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
T L F S +P+ L H+H S L DS TY+ L+ +C TL NLG
Sbjct: 28 TNLSFQSPNSTPQSM-----HLSTAAHHTHLSLLDKQIDSSTYASLLESCRTL---NLGK 79
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+HA K GF H +V T L+ MY G L D++ +F ++P+RNL +W +++ V G
Sbjct: 80 QVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHG 139
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
E A SLFE++ ++ G+ E + V+ + G +R
Sbjct: 140 YFEEALSLFEKLQLDDI----GL------------------EFFVFPVVLKLC--GGLRV 175
Query: 209 CQL---IHGYGEKR------------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+L +HG KR GF+ ++ N +I Y + G + A +LF+ +
Sbjct: 176 LELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQME 235
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENF-ERMQKVGLKPNRVTFLSVLNACS------- 305
+ K+ +SW S+ISG+A + + A+ F + + + G++ + T SVL AC+
Sbjct: 236 LVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRR 295
Query: 306 ----HG-----GLHY-----GCLVDMLGRAGRLEQAEKIALGIPSEIT 339
H GLH+ G LV+M + L+ A+ G+ T
Sbjct: 296 GKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDT 343
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 159/388 (40%), Gaps = 96/388 (24%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
F + +++ C L LG QLH V+ K +M +L K+F
Sbjct: 161 FVFPVVLKLCGGLRVLELGRQLHGVVIK-----------RCADMGSAL-------KIFSG 202
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGA-- 184
+N+V++N MI G + G +E A+ LF++M ++ +SW ++ GY + A
Sbjct: 203 FSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALS 262
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
E T+ +VL A ++R + +H RG + ++ V L++
Sbjct: 263 MFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLH-WNTFVGGALVEM 321
Query: 236 YAKCGCIFSALKLFEDISVERK----------------------------------NLVS 261
Y+KC + +A F+ ++ ER N+ +
Sbjct: 322 YSKCEDLKAAQLAFDGVT-ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYT 380
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HG--- 307
W IISG +G + A+ F MQ L+P+ T +L AC+ H
Sbjct: 381 WNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSI 440
Query: 308 ------GLHYG-CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
+H G LVDM + G ++ A ++ I + ++V + +L A + HG+ + G
Sbjct: 441 RQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISN--PNLVSQNAMLTAYAMHGHGDEG 498
Query: 361 ERVTRKVLEMERGNG--GDYVLMYNILA 386
+ R +L GNG D+V ++L+
Sbjct: 499 IALFRNML----GNGFRPDHVTFLSVLS 522
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 140/421 (33%), Positives = 213/421 (50%), Gaps = 77/421 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLY-KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
NT+L + + P A L+ ++L TH++ PL ++ C L
Sbjct: 89 LNTVLRIAASSSRPSLALALHARRLAPPDTHTYPPL------------LQACARLLSLRH 136
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G ++HA +K G + V+V +LV++Y + G + + ++FDE+P
Sbjct: 137 GERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIP---------------- 180
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAV 196
GE RN+VSW +L+G+ R N T P T+++V
Sbjct: 181 VGE-------------RNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSV 227
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A + GA+ + +H Y K G + V N LID YAKCG + A ++FE++ R
Sbjct: 228 LTASAEIGALALGRRVHVYLTKVGL-VENSHVGNALIDLYAKCGGVEDARRVFEEMGA-R 285
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+ +VSWTS+I G A++G GK A+E F M++ L P +T + VL ACSH GL
Sbjct: 286 RTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMY 345
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
H GC+VD+LGRAG++++A L +P E + VV R LLGAC+ H
Sbjct: 346 FNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLE-PNAVVWRTLLGACAMH 404
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
+E+GE +++E++ G+ GDYVL+ N+ A VGR+ D LR+ M + K PGRSL
Sbjct: 405 KKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSL 464
Query: 415 V 415
V
Sbjct: 465 V 465
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 209/422 (49%), Gaps = 79/422 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
NT+L + + P+ A L+++ L D+ TY LI+ C L G
Sbjct: 775 LNTVLRIAAGSPRPRVALELHRRRLA-----------LPDTHTYPPLIQACARLLALREG 823
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LHA +K GF + V+V +LV++Y + G + + K+FD
Sbjct: 824 ECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFD-------------------- 863
Query: 148 GELEYARSLFEEMPCR--NVVSWTGILDGYTRMNRSN----------GASTEPSEITILA 195
EMP R N+VSW +L+ + R N G P TI++
Sbjct: 864 -----------EMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVS 912
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A + GA+ + +H Y EK G + VSN LID YAKCG + A ++FE++ +
Sbjct: 913 VLTACAEFGALALGRRVHVYVEKVGLVE-NSHVSNALIDLYAKCGSVNDARRIFEEMGLG 971
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
R +VSWTS+I G A +G GK A+E F M++ L P +T + VL ACSH GL
Sbjct: 972 R-TVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFR 1030
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
H GC+VD+LGRAGR+E+A + +P E + VV R LLG+C+
Sbjct: 1031 YFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLE-PNAVVWRTLLGSCAM 1089
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
H +E+G+ +++E++ G+ GDYVL+ N+ A VG + D LR+ M + K PG S
Sbjct: 1090 HKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHS 1149
Query: 414 LV 415
LV
Sbjct: 1150 LV 1151
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 220/410 (53%), Gaps = 54/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ ++ +++P A L+ Q+ H+ S + P D+ T+ FL + L +LG
Sbjct: 103 WNTMIRGFAESENPSPAVELFSQM-----HAASSILP--DTHTFPFLFKAVAKLMDVSLG 155
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+V+ + GF S +V +LV+MY LG L + ++F+ + R+ V WN +I G
Sbjct: 156 EGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALN 215
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A +L+ EM V EP T++++L A + GA+
Sbjct: 216 GMPNEALTLYREMGSEGV---------------------EPDGFTMVSLLSACVELGALA 254
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H Y K G + SN L+D Y+KCG A K+F+++ E +++VSWTS+I
Sbjct: 255 LGERVHMYMVKVGL-VQNQHASNALLDLYSKCGNFRDAQKVFDEM--EERSVVSWTSLIV 311
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G A++G+G A++ F +++ GLKP+ +TF+ VL ACSH G+
Sbjct: 312 GLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGIL 371
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
H+GC+VD+L RAG++ A +P + V+ R LLGAC+ HG++E+GE
Sbjct: 372 PRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVP-PNAVIWRTLLGACTIHGHLELGEVARA 430
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ +E+ + GD+VL+ N+ A R++D + +R++M + K PG SLV
Sbjct: 431 EIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLV 480
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 41/259 (15%)
Query: 72 SFLIRTCVTL-----SYPNLGTQLHAVISKVG-------FQSHVYVNTALVNMYVSLGFL 119
SF++R C++L S + Q+HA + G F H+ ALV++ + F
Sbjct: 31 SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIF--ALVSLSAPMSF- 87
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
++++F+++ N+ TWN MI G + A LF +M
Sbjct: 88 --AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQM------------------- 126
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+S P T + A+ + V + IH + GF++ V N L+ Y+
Sbjct: 127 -HAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRF-VQNSLVHMYSVL 184
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + SA ++FE +S ++ V+W S+I+GFA++GM A+ + M G++P+ T +S
Sbjct: 185 GSLXSAYQVFEIMSY--RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVS 242
Query: 300 VLNACSH-GGLHYGCLVDM 317
+L+AC G L G V M
Sbjct: 243 LLSACVELGALALGERVHM 261
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 139/408 (34%), Positives = 206/408 (50%), Gaps = 53/408 (12%)
Query: 32 LHFYS--LADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQ 89
+H Y+ LA SP A + K + ++ S LRP D ++ ++R C LG+
Sbjct: 72 MHAYNVLLAASPPDAAV--KLVSRLVA---SGLRP--DRYSVPAVLRACAESRDALLGSV 124
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
LH ++G ++V V+ AL++MY G L D+ ++FDE+PER+ V WN M+TG + G
Sbjct: 125 LHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGYARAGR 184
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
E LF + + G R R+ + +VL G +
Sbjct: 185 SEETLELFRKAQIESA--------GMARDLRA-----------VPSVLNVCADEGQLMKG 225
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+ IHG + ++ D V N LID Y KCG + A +F S+E KN+VSW+S+IS +
Sbjct: 226 REIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFA--SMEEKNVVSWSSLISCY 283
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
+HGMGK A+ +E M VG+KPN VTF+S+L++CSH GL
Sbjct: 284 GVHGMGKEALRVYEEMVSVGVKPNCVTFVSILSSCSHSGLVSDGRRIFESMRKVHAVEPT 343
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HY C+VD+LGRAG +E+A + +P E + LL AC+ H NV++GE ++
Sbjct: 344 ADHYACMVDLLGRAGAIEEAVGLVNEMPME-PGASLWGALLSACAIHNNVDVGEVAAYRL 402
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E+E N +YV + I +GR LR M E +K PG S V
Sbjct: 403 FELEEDNASNYVTLCGIYDAIGRSDSVAGLRSRMRELGMVKTPGCSWV 450
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 207/398 (52%), Gaps = 56/398 (14%)
Query: 47 LYKQLQQIYTHSHSPL----------RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK 96
L K QI+T S P+ P+ +SFT +F+++ C ++ G Q+H+ + K
Sbjct: 61 LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120
Query: 97 VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSL 156
GF S ++V T+LVN Y + + K+F+E+P RNLV W MI+G + G ++ A L
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180
Query: 157 FEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
F EM A +P +T+++V+ A GA+ +H Y
Sbjct: 181 FREM---------------------QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYI 219
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
EK F D+ +S L+D YAKCGCI A ++F + V K+ +W+S+I GFA HG+ +
Sbjct: 220 EKY-FVLTDLELSTALVDMYAKCGCIERAKQVFVHMPV--KDTTAWSSMIMGFAYHGLAQ 276
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLV 315
A++ F++M + + P+ VTFL+VL+AC+HGGL HYGC V
Sbjct: 277 DAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKV 336
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
D+L R+G +E+A +I + R +L+G C + +GE V R +LE+E N
Sbjct: 337 DLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMG-CKKKKLLNLGEIVARYLLELEPLNA 395
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+Y+++ N+ + + ++ LR+VM E+ PG S
Sbjct: 396 ENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCS 433
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 129/266 (48%), Gaps = 38/266 (14%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------------SNGAST 186
V L +G + YARS+F ++P N+ SW ++ GY++++ +
Sbjct: 29 VAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYP 88
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+ T+ VL A A +H + K GF + + V L++ Y KC I A
Sbjct: 89 VPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGS-SLFVQTSLVNFYGKCEEIGFAR 147
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS- 305
K+FE++ V +NLV+WT++ISG A G A+E F MQK G++P+ +T +SV++AC+
Sbjct: 148 KVFEEMPV--RNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAV 205
Query: 306 HGGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G L G LVDM + G +E+A+++ + +P + D
Sbjct: 206 AGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP--VKDTTAWS 263
Query: 346 ILLGACSFHGNVEMGERVTRKVLEME 371
++ ++HG + +++LE E
Sbjct: 264 SMIMGFAYHGLAQDAIDAFQQMLETE 289
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 197/381 (51%), Gaps = 38/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T + C L +G ++H + + + AL++MY G + + +F
Sbjct: 215 DEATVVSTLSACSVLRNQEVGEEIHRYVD-AELEMTTKIGNALLDMYCKCGCVDKARAIF 273
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+ +N++ W M++G G L+ AR LFE P R++V WT +++GY + N + A
Sbjct: 274 DEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALK 333
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P ++ +L Q GA+ + +HGY + D V L+D Y
Sbjct: 334 LFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSIT-LDRVVGTALVDVY 392
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGC+ AL++F ++ + ++ SWTS+I G A++GM A++ F +M++ G +P+ +T
Sbjct: 393 AKCGCVEKALEVFYEM--KERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDIT 450
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+ VL AC+HGGL HY CL+D+L RAG L++AE + I
Sbjct: 451 FIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMI 510
Query: 335 PSEITDVVVRRI--LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
P E +D+VV LL AC +GN++M ERV R++ +E + + L+ ++ A R+
Sbjct: 511 PIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASANRWE 570
Query: 393 DAERLRRVMDERNALKFPGRS 413
D +RR M E KFPG S
Sbjct: 571 DVTTVRRKMKELGIRKFPGCS 591
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 40/262 (15%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+++N ++ + ++ +K +L+ +L++ L P D+FT + + L
Sbjct: 82 VMYNLMIKAVAKDENFRKVLVLFSELRK------QGLNP--DNFTLPPVFKAMGCLGKVV 133
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G ++H + K GF + V +++ MY +LG ++ + K+FDE+PER++V+WNV+I+ V
Sbjct: 134 EGEKVHGYVVKSGFDA--CVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYV 191
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ E A ++F RM R ++ + E T+++ L A
Sbjct: 192 GHRKFEDAIAVFR------------------RMRRE--SNLKADEATVVSTLSAC---SV 228
Query: 206 VRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
+RN ++ IH Y + ++ N L+D Y KCGC+ A +F+++ KN++ W
Sbjct: 229 LRNQEVGEEIHRYVDAE--LEMTTKIGNALLDMYCKCGCVDKARAIFDEMG--NKNVICW 284
Query: 263 TSIISGFAMHGMGKAAVENFER 284
TS++SG+A +G A E FER
Sbjct: 285 TSMVSGYASNGSLDEARELFER 306
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 32/235 (13%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV--SLGFLKDSSKLFDELPE 131
L+++C ++++ TQ+HA I +VG Q ++ T +V S G ++ + ++ +
Sbjct: 22 LLQSCESMAHL---TQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQS 78
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
LV +N+MI + K LF E+ R G + P
Sbjct: 79 PCLVMYNLMIKAVAKDENFRKVLVLFSEL-------------------RKQGLN--PDNF 117
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ V A+ G V + +HGY K GF+A V N ++ Y G + A K+F++
Sbjct: 118 TLPPVFKAMGCLGKVVEGEKVHGYVVKSGFDAC---VCNSVMGMYGALGKMEVAKKVFDE 174
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNACS 305
I +++VSW +IS + H + A+ F RM++ LK + T +S L+ACS
Sbjct: 175 IP--ERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACS 227
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 219/395 (55%), Gaps = 53/395 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI------RT 77
+T +NTL+ Y+ + P + L Q++Q + + P D FT++FLI R
Sbjct: 27 NTFFYNTLIRGYAKSSIPSYSLHLVNQMRQ------NGVDP--DEFTFNFLIKARSRVRV 78
Query: 78 CVTLSYPNL--GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+ + P + ++H + K+GF SH++V AL+++Y + G + ++FDE ++V
Sbjct: 79 NINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVV 138
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------S 185
+W+ ++ V+ GELE AR +F++MP R+VVSWT ++ Y++ S A
Sbjct: 139 SWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKG 198
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P E+T+++V+ A G ++ +H Y ++ GF + + + N LID YAKCGC+ A
Sbjct: 199 VRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFR-WMVSLCNALIDMYAKCGCMDRA 257
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++F +S RK+LV+W S+IS A + + A F RM G+ P+ VTFL+VL A +
Sbjct: 258 WQVFNSMS--RKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYA 315
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
H GL HYGC+V+MLG+AG LE+A ++ +P D VV
Sbjct: 316 HVGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSND-VV 374
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
+LL AC HG+V MGERV +K+LE++ +GG Y
Sbjct: 375 WGVLLAACRKHGDVYMGERVVKKLLELKL-DGGYY 408
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 82/300 (27%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + +LFD+LP N +N +I G K Y+ L +M
Sbjct: 11 GDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQM---------------- 54
Query: 177 RMNRSNGASTEPSEITILAVLPA-------IWQN-GAVRNCQLIHGYGEKRGFNAFDIRV 228
R NG +P E T ++ A I +N V C IHG K GF++ + V
Sbjct: 55 ---RQNG--VDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSS-HLFV 108
Query: 229 SNCLIDTYAKCGCIFSALKLFEDI-------------------SVER----------KNL 259
N LI YA G A ++F++ +ER +++
Sbjct: 109 RNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDV 168
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------ 312
VSWT+++S ++ + A+E + M G++P+ VT +SV++AC++ G L G
Sbjct: 169 VSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSY 228
Query: 313 --------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
L+DM + G +++A ++ + + +V ++ AC+ + N E
Sbjct: 229 IDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRK--SLVTWNSMISACANNRNPE 286
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 206/389 (52%), Gaps = 42/389 (10%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
H+ + P D++ + +++ C + ++HA + K+GF S V ++ +Y G
Sbjct: 120 HNSVLP--DNYVITSVLKACDL----KVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGE 173
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L ++ K+FDE+P+R+ V VMI + G ++ A LF+++ ++ V WT ++DG R
Sbjct: 174 LVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 179 NRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
N A + +E T + VL A GA+ + +H + E + + V
Sbjct: 234 KEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF-V 292
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N LI+ Y++CG I A ++F + K+++S+ ++ISG AMHG A+ F M
Sbjct: 293 GNALINMYSRCGDINEARRVFR--VMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNR 350
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
G +PN+VT +++LNACSHGGL HYGC+VD+LGR GRLE+
Sbjct: 351 GFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEE 410
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A + IP E D ++ LL AC HGN+E+GE++ +++ E E + G YVL+ N+ A
Sbjct: 411 AYRFIENIPIE-PDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYA 469
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
G++ ++ +R M + K PG S +
Sbjct: 470 SSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 61/263 (23%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP------AIWQN 203
++YA +F + NV +T ++DG+ RS + + +VLP ++ +
Sbjct: 77 VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKA 136
Query: 204 GAVRNCQLIH------GYGEKR--GFNAFDIR----------------------VSNCLI 233
++ C+ IH G+G R G +I + +I
Sbjct: 137 CDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMI 196
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ Y++CG I AL+LF+D+ + K+ V WT++I G + A+E F MQ + N
Sbjct: 197 NCYSECGFIKEALELFQDVKI--KDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSAN 254
Query: 294 RVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
T + VL+ACS G L G L++M R G + +A ++
Sbjct: 255 EFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFR 314
Query: 333 GIPSEITDVVVRRILLGACSFHG 355
+ + DV+ ++ + HG
Sbjct: 315 VMRDK--DVISYNTMISGLAMHG 335
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 195/372 (52%), Gaps = 47/372 (12%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
FD T ++ C + LG + + + G + + TAL++MY G L + +L
Sbjct: 218 FDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRL 277
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + R++V W+ MI+G + + A +LF EM A
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEM---------------------QLAE 316
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
EP+++T+++VL A GA+ + +H Y ++ + I + L+D YAKCGCI A
Sbjct: 317 VEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLS-LTIILGTALVDFYAKCGCIDDA 375
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++ FE + V KN +WT++I G A +G G+ A+E F M+K ++P VTF+ VL ACS
Sbjct: 376 VEAFESMPV--KNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACS 433
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
H L HYGC+VD+LGRAG +++A + +P E + V+
Sbjct: 434 HSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIE-PNAVI 492
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
R LL +C+ H NVE+GE ++++ + + GDY+L+ NI A VG++ +A +R+ M +
Sbjct: 493 WRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKD 552
Query: 404 RNALKFPGRSLV 415
R K PG SL+
Sbjct: 553 RGIEKTPGCSLI 564
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 38/304 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T +N L+ A P+ A L+ ++ + S P D T + +++C +
Sbjct: 83 TPCYNVLMRALLHAGHPEDALHLFVEMLDVA--SVCP-----DQHTVACALKSCSRMCTL 135
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
++G + A K G + +V ++L++MY S + + LFD + E +V WN +IT
Sbjct: 136 DVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAY 195
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+K G +W +++ + M A EIT+++V+ A + G
Sbjct: 196 MKNG------------------NWMEVVEMFKGMLEVGVAF---DEITLVSVVTACGRIG 234
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSN---CLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+ + + Y +++G +R N LID YAKCG + A +LF+ ++ +++V+
Sbjct: 235 DAKLGKWVAEYVDEKGL----VRNRNLMTALIDMYAKCGELGKARRLFD--GMQSRDVVA 288
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGGLHYGCLVDMLGR 320
W+++ISG+ + A+ F MQ ++PN VT +SVL+AC+ G L G V R
Sbjct: 289 WSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIR 348
Query: 321 AGRL 324
RL
Sbjct: 349 RKRL 352
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 131/430 (30%), Positives = 221/430 (51%), Gaps = 59/430 (13%)
Query: 28 FNTLLHFYSLADSPKKAF-----LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82
+NT++ +S + +P+ A +LY Q+Q Y TY + + L
Sbjct: 95 WNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQY-------------LTYPSVFKAYAQLG 141
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD----ELPERNLVTWN 138
+ + G QLH + K+G Q+ ++ ++ MY + G + ++ ++FD EL + ++V N
Sbjct: 142 HAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAIN 201
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEP 188
MI G K GE++ +R+LF++M R VSW ++ GY R N+ E
Sbjct: 202 SMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEV 261
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
SE T++++L A GA+++ + +H Y ++ F ++ V +ID Y KCG + +A+++
Sbjct: 262 SEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFE-LNVIVVTAIIDMYCKCGSVENAVEV 320
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHG 307
FE + R+ L W SII G AM+G + A E F +++ L KP+ V+F+ VL AC H
Sbjct: 321 FE--TCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHL 378
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G HY C+VD+LG+AG LE+AE++ G+P + D ++
Sbjct: 379 GAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLK-PDAIIWG 437
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL +C H NV++ R ++V E+ + YVLM N+ A ++ +A R +M E
Sbjct: 438 SLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENL 497
Query: 406 ALKFPGRSLV 415
K PG S +
Sbjct: 498 TEKEPGCSSI 507
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 40/299 (13%)
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT-ALVNMYVSLGFLKDSSKLFDELP 130
+ L C T+++ + Q++ I K G + +T AL G + + KLF +P
Sbjct: 32 TMLQNHCTTINHFH---QIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMP 88
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSNGAST 186
NL +WN +I + ++A SLF +M + +++ + Y ++ ++ +
Sbjct: 89 NPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQ 148
Query: 187 EPSEITILAV---------LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+ L + + ++ NG + + G+K D+ N +I YA
Sbjct: 149 LHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYA 208
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG I + LF+D+ + VSW S+ISG+ +G A+E F +MQ G + + T
Sbjct: 209 KCGEIDESRNLFDDMIT--RTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTM 266
Query: 298 LSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+S+LNAC+H G L +G ++DM + G +E A ++ P
Sbjct: 267 VSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCP 325
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 197/369 (53%), Gaps = 47/369 (12%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P ++FT +F+++ C + G Q+HA I + GF S YV ++LVN Y + +
Sbjct: 88 PNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIAR 147
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
K+FDE+ ERNLV W+ M++G + G + A +F EM +
Sbjct: 148 KVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGI------------------ 189
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
EP E++++ VL A GA+ + +H Y +KR + D+ ++ LI+ YAKCGCI
Sbjct: 190 ---EPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHV-DLELNTALINMYAKCGCIE 245
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A ++F+++ V K+ +W+S+I G A+HG+ + A+ F RM++ KPN VTF+ +L+A
Sbjct: 246 KAREIFDEMRV--KDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSA 303
Query: 304 CSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
C+HGGL HYGC+VD+L R G +++A AL IP+ D V
Sbjct: 304 CAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPT--PDPV 361
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
+ R LL A + + ++ E V K+LE+E +Y+++ N+ A V + +R++M
Sbjct: 362 IWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMK 421
Query: 403 ERNALKFPG 411
E PG
Sbjct: 422 ENGIKALPG 430
>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
Length = 514
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 236/469 (50%), Gaps = 63/469 (13%)
Query: 2 PSSNNVTTR-IHSHLLTTNS-LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH 59
PS + R + +HLL++ S LL L N LL + P A L+ +L++I+
Sbjct: 14 PSLSAAQLRQVDAHLLSSFSHLLADRFLPNQLLRSL-IPAHPLGALRLFPRLRRIFPD-- 70
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYP-NLGTQ-----------LHAVISKVGFQSHVYVNT 107
RP +++T+SFL++ S P +LG LHA+ + + +H YV
Sbjct: 71 --FRP--NNYTFSFLLKAAADSSAPPSLGPDYPFGAHAIVPSLHALAVVLAWDAHAYVAN 126
Query: 108 ALVNMYVSLGFLKDSSKLF-DELPER--NLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
L++ Y + G + + +LF D L R ++ +W ++T K G++E AR+LF+ MP RN
Sbjct: 127 GLIHAYATHGVVPSARRLFEDALASRAADVCSWTSLLTACAKAGQVEEARALFDGMPRRN 186
Query: 165 VVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIH- 213
V+W+ +L Y + A P+ ++ VL A GA+ + +H
Sbjct: 187 DVAWSAMLSAYVAAGSFDDAVRLFEDMLRSGVRPNRAAVVGVLAACGALGALDQGRWVHA 246
Query: 214 ----GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISG 268
G G A D V+ L+D YAKCG + +A ++F + ++++ ++T++ISG
Sbjct: 247 LLVSGTHGGDGATAMDGVVATALVDMYAKCGSLDTARQVFAAAAPRSQRDVFAYTAMISG 306
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------- 309
+ HG A++ F +MQ G++PN VTF+ VL AC GL
Sbjct: 307 LSDHGRCGEAIDLFGQMQAEGVRPNEVTFICVLTACGRAGLVGRAKEVFRSMAAVHGMEP 366
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYGCLVD+LGRAG L +A + + D V LL AC+ HG+VE GE+V R
Sbjct: 367 GVEHYGCLVDVLGRAGLLAEAMETVRSMTMR-PDAYVLGALLNACAAHGDVEAGEQVVRW 425
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E+ + G +V + N+ AG ++ + ++RR MD+R K PG S++
Sbjct: 426 LAELGLDHSGVHVQLSNMYAGWSKWEEVLKVRRTMDQRKVAKVPGCSML 474
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 197/387 (50%), Gaps = 47/387 (12%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P+ D F ++ ++ V + T+ + ++ ++ V N A++ YV ++ +
Sbjct: 273 PIRDVFAWTAMVSGFVQNGMLDEATR---IFEEMPEKNEVSWN-AMIAGYVQSQQIEKAR 328
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT------- 176
+LFD++P RN +WN M+TG + G ++ A+ LF+EMP R+ +SW ++ GY
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388
Query: 177 ------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
+M R G + L+ I A+ + +HG K GF I N
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEI---AALELGKQLHGRLVKAGFQTGYI-AGN 444
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+ Y KCG I A +FEDI+ K++VSW ++I+G+A HG GK A+ FE M K+ +
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDIT--EKDIVSWNTMIAGYARHGFGKEALALFESM-KMTI 501
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ VT + VL+ACSH G HY C++D+LGRAGRL++A
Sbjct: 502 KPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P D LLGA HG+ E+GE+ KV EME N G YVL+ N+ A
Sbjct: 562 NLMKSMPF-YPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ + +R M ++ K PG S V
Sbjct: 621 GRWREVREMRSKMRDKGVKKVPGYSWV 647
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 42/214 (19%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+++ Y+S + K+F+++P+R+L++WNVM++G VK G L AR+LF +MP ++VVS
Sbjct: 96 AMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS 155
Query: 168 WTGILDGYTRMNRSNGASTEP----------SEITILAVLPAIWQNGAVRNCQ------- 210
W +L G+ + NG E +EI+ +L A QNG + + +
Sbjct: 156 WNAMLSGFAQ----NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKM 211
Query: 211 ---------LIHGYGEKRG-------FNAFDIRVS---NCLIDTYAKCGCIFSALKLFED 251
L+ GY K+ F+ +R N +I YA+ G + A +LFE+
Sbjct: 212 DWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEE 271
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ + +++ +WT+++SGF +GM A FE M
Sbjct: 272 LPI--RDVFAWTAMVSGFVQNGMLDEATRIFEEM 303
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 55/268 (20%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
++ Y G L ++ +LF+ELP R++ W M++G V+ G L+ A +FEEMP +N VSW
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSW 311
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
++ GY + + A + +P+ R +++
Sbjct: 312 NAMIAGYVQSQQIEKAR------ELFDQMPS-------------------RNTSSW---- 342
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N ++ YA+CG I A LF+++ +++ +SW ++ISG+A G + A+ F +M++
Sbjct: 343 -NTMVTGYAQCGNIDQAKILFDEMP--QRDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399
Query: 289 GLKPNRVTFLSVLNACS-----------HG-----GLHYG-----CLVDMLGRAGRLEQA 327
G NR L++C+ HG G G L+ M G+ G +E+A
Sbjct: 400 GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHG 355
+ I + D+V ++ + HG
Sbjct: 460 FDVFEDITEK--DIVSWNTMIAGYARHG 485
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 105/250 (42%), Gaps = 55/250 (22%)
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+ ++V WN I+ ++ G+ E A S+F M R+ V++ ++ GY N+ + A
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR----- 111
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+ +P D+ N ++ Y K G + +A LF
Sbjct: 112 -KVFEKMP------------------------DRDLISWNVMLSGYVKNGNLSAARALFN 146
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-- 308
+ K++VSW +++SGFA +G + A + F++M L N +++ +L+A G
Sbjct: 147 QMP--EKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRI 200
Query: 309 ---------------LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
+ + CL+ R RL+ A + +P + D + I++ +
Sbjct: 201 EDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP--VRDKISWNIMITGYAQ 258
Query: 354 HGNVEMGERV 363
+G + R+
Sbjct: 259 NGLLSEARRL 268
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 193/375 (51%), Gaps = 51/375 (13%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG--FLKDS 122
L + FT+ FL++ C ++P +G Q HA K GF + YV+ L++MY G FL D+
Sbjct: 143 LPNKFTFPFLLKACA--AFPGVGVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDA 200
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+FD + + + VTW+ MI G V+ G A LF EM
Sbjct: 201 RNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREM---------------------Q 239
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ P E+T++ VL A GA+ + + + EK G + + N LID AKCG +
Sbjct: 240 ASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGK-SVTLCNALIDALAKCGDL 298
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A+ +F+ ++ + +VSWTS+I AM G GK AV FE M+ G++P+ V F+ VL
Sbjct: 299 DGAMAVFQ--GMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLT 356
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH G+ HYGC+VDM GRAG +E+A + +P + +
Sbjct: 357 ACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMK-PN 415
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
++ R L+ AC HG +E+GE +TR +L + +YV++ N+ A R+ + +RR
Sbjct: 416 PIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRRE 475
Query: 401 MDERNALKFPGRSLV 415
M +R K PG SLV
Sbjct: 476 MSKRGIKKVPGCSLV 490
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 194/421 (46%), Gaps = 93/421 (22%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFT-------------YSFLIRTCVTLSYPNLG 87
PK LY +L Q Y+ SH P F +T ++FL C +LS G
Sbjct: 43 PKPTVFLYNKLIQAYS-SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQG 101
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH K GF V+ TALV+MY LG L + K FDE+ R++ TWN MI G +
Sbjct: 102 RMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARC 161
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------STE--PSEITILAV 196
G+LE A LF MP RNV SWT ++ GY + + A TE P+E+T+ +V
Sbjct: 162 GDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
LPA GA+ + I Y G+ ++ VSN L++ YA+CG I A +FE+I R
Sbjct: 222 LPACANLGALEVGERIEVYARGNGYFK-NLYVSNALLEMYARCGRIDKAWGVFEEID-GR 279
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+NL SW S+I G A+HG A+E F +M + G P+ VTF+ VL AC+HGG+
Sbjct: 280 RNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHF 339
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC+VD+LG
Sbjct: 340 FESMERDFSIAPKLEHYGCMVDLLGPGA-------------------------------- 367
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
+ E+E N G+YV++ NI A GR+ RLR++M K G S
Sbjct: 368 ------------LFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSF 415
Query: 415 V 415
+
Sbjct: 416 I 416
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 32/246 (13%)
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPS 189
+I L++ + YA LF+ +P V + ++ Y+ + P+
Sbjct: 22 LIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPN 81
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
E + + A + + +++H + K GF D+ L+D YAK G + A K F
Sbjct: 82 EHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGC-DVFALTALVDMYAKLGLLSLARKQF 140
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
++++V +++ +W S+I+G+A G + A+E F M N ++ ++++ + G
Sbjct: 141 DEMTV--RDVPTWNSMIAGYARCGDLEGALELFRLMPA----RNVTSWTAMISGYAQNGQ 194
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+ L L +E+ ++ P+E+T V L AC+ G +E+GER+
Sbjct: 195 YAKALSMFL----MMEEETEMR---PNEVTLASV----LPACANLGALEVGERIEVYA-- 241
Query: 370 MERGNG 375
RGNG
Sbjct: 242 --RGNG 245
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 209/380 (55%), Gaps = 39/380 (10%)
Query: 63 RPLFDSFTY-SFLIRTCVTLSYPNLGTQLHA--VISKVGFQSHVYVNTALVNMYVSLGFL 119
R +FD + S + T V + Y G A + ++ + V N A+++ YV +G +
Sbjct: 180 RKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFN-AMIDGYVKMGCV 238
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ +LF+E+ ERN+V+W M++G G++E A+ +F+ MP +NV +W ++ GY +
Sbjct: 239 GLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNR 298
Query: 180 RSNG----------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
RS+ AS EP+E+T++ VLPA+ GA+ + IH + ++ + R+
Sbjct: 299 RSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDR-SARIG 357
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
LID YAKCG I A FE ++ + SW ++I+GFA++G K A+E F RM + G
Sbjct: 358 TALIDMYAKCGEITKAKLAFEGMT--ERETASWNALINGFAVNGCAKEALEVFARMIEEG 415
Query: 290 LKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAE 328
PN VT + VL+AC+H GL HYGC+VD+LGRAG L++AE
Sbjct: 416 FGPNEVTMIGVLSACNHCGLVEEGRRWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEAE 475
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + +++ L AC + +V ERV ++V++M+ G+YV++ N+ A
Sbjct: 476 NLIQTMPYDANGIILSSFLF-ACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATR 534
Query: 389 GRYVDAERLRRVMDERNALK 408
R+ D E ++++M +R K
Sbjct: 535 QRWTDVEDVKQMMKKRGTSK 554
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 51/317 (16%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L N+++ + A + F L++ L++ P P D +T++ L++ C T
Sbjct: 88 TFLCNSMIAAHFAARQFSQPFTLFRDLRR----QAPPFTP--DGYTFTALVKGCATRVAT 141
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
GT LH ++ K G +YV TALV+MYV G L + K+FDE+ R+ V+W +I G
Sbjct: 142 GEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGY 201
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLP 198
+ G++ AR LF+EM R++V++ ++DGY +M A E + ++ +++
Sbjct: 202 ARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVS 261
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
NG V N +L+ FD+ + KN
Sbjct: 262 GYCGNGDVENAKLM-----------FDL---------------------------MPEKN 283
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDM 317
+ +W ++I G+ + A+E F MQ ++PN VT + VL A + G L G +
Sbjct: 284 VFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHR 343
Query: 318 LGRAGRLEQAEKIALGI 334
+L+++ +I +
Sbjct: 344 FALRKKLDRSARIGTAL 360
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 110/264 (41%), Gaps = 40/264 (15%)
Query: 60 SPLRPLFDSFTYSFL-IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG- 117
P R L+ + + L I C T S P L Q+HA I + S++ + TA V SL
Sbjct: 6 QPQRTLWSNAERTCLHILQCRTKSIPTL-LQIHAFILRHSLHSNLNLLTAFVTTCASLAA 64
Query: 118 -------FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+ + + F+ R+ N MI + +LF ++ R +T
Sbjct: 65 SAKRPLAIINHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLR-RQAPPFTP 123
Query: 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
DGYT G +T A L+HG K G FD+ V+
Sbjct: 124 --DGYTFTALVKGCATRV----------------ATGEGTLLHGMVLKNGV-CFDLYVAT 164
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+D Y K G + SA K+F+++SV K VSWT++I G+A G A F+ M+ +
Sbjct: 165 ALVDMYVKFGVLGSARKVFDEMSVRSK--VSWTAVIVGYARCGDMSEARRLFDEMEDRDI 222
Query: 291 KPNRVTFLSVLNACSHGGLHYGCL 314
V F NA G + GC+
Sbjct: 223 ----VAF----NAMIDGYVKMGCV 238
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/525 (29%), Positives = 237/525 (45%), Gaps = 124/525 (23%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLH-FYSLADSPKKAFLLYKQLQQ-----------IYTH 57
+IH+ L+TTN L+ T + LL S + A L++ Q+ Q YT
Sbjct: 29 QIHAQLITTN-LISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTE 87
Query: 58 SHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
S +P R L D++TY F+++ C + G + K GF V+V
Sbjct: 88 SSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFV 147
Query: 106 NTALVNMY-------------------------------VSLGFLKDSSKLFDELPERN- 133
L++MY V G ++++ +FDE+PER+
Sbjct: 148 VNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDV 207
Query: 134 -------------------------------LVTWNVMITGLVKWGELEYARSLFEEMPC 162
LV+WN MI G K GE+E AR +F++M
Sbjct: 208 VSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQ 267
Query: 163 RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLI 212
+NV+SW+ ++DGY + S A +P ++++ + A Q GA+ + I
Sbjct: 268 KNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWI 327
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y KR DI V L+D Y KCG A ++F S+ +N+VSW +I G M+
Sbjct: 328 HLY-MKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFN--SMPERNVVSWNVMIVGLGMN 384
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G GK A+E F +M+ + + + FL VL ACSH L H
Sbjct: 385 GFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEH 444
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
YGCLVD+LGRAG+L+Q + I +P + + +LL AC H NV + E V ++ E+
Sbjct: 445 YGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL-ACRIHQNVTLAEIVVERLAEL 503
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + G YVLM NI A VG + R+R++M ER K GRS++
Sbjct: 504 KADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVI 548
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 39/342 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+L++ YV G ++D+ LFD++P R++VTW M+ G K G + A+SLF++MP R+VV+
Sbjct: 259 SLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVA 318
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + NR + + + P E T++ VL AI Q G + +H Y
Sbjct: 319 YNSMMAGYVQ-NRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 377
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
++ F ++ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G
Sbjct: 378 TVEKKF-LLGGKLGVALIDMYSKCGSIQQAMGVFERI--ENKSIDHWNAMIGGLAIHGLG 434
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A + ++++ +KP+ +TF+ VLNACSH GL HYGC
Sbjct: 435 ESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGC 494
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+L R+GR+E A+ + +P E D V+ R L ACS H E GE V + ++
Sbjct: 495 MVDILSRSGRIELAKNLIEEMPIEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGY 553
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A +G + + R+R +M ER K PG S +
Sbjct: 554 NPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWI 595
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 181/382 (47%), Gaps = 59/382 (15%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ +S P+KA LL+ + + D F+ S +++ C L +
Sbjct: 89 FLWNAVIKSHSHGVEPRKALLLFFLMLKNGVS--------VDKFSLSLVLKACSRLGFVK 140
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q H + K G S +++ L+ +Y+ G L + ++FD + +R+ V++N MI G V
Sbjct: 141 EGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYV 200
Query: 146 KWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAST---------EPSEITIL 194
K G +E AR LF+ MP +N++SW +++GY + R++G E I+
Sbjct: 201 KCGLIESARELFDLMPSEKKNLISWNSMINGYAQ--RADGVDIASNLFDEMPEKDLISWN 258
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+++ ++G + + + + +R D+ ++D YAK G + A LF+ +
Sbjct: 259 SLIDGYVKHGRIEDAKDLFDKMPRR-----DVVTWATMVDGYAKLGFVHQAKSLFDQMP- 312
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH------- 306
++++V++ S+++G+ + A++ F M+K L P+ T + VL+A +
Sbjct: 313 -QRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 371
Query: 307 --------------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR--ILLGA 350
GG L+DM + G ++Q A+G+ I + + ++G
Sbjct: 372 MDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQ----AMGVFERIENKSIDHWNAMIGG 427
Query: 351 CSFHGNVEMGERVTRKVLEMER 372
+ HG +GE +L++ER
Sbjct: 428 LAIHG---LGESAFDMLLQIER 446
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
+ AL++MY G ++ + +F+ + +++ WN MI GL G E A + ++ R+
Sbjct: 389 LGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRS 448
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+ +P +IT + VL A +G V+ L +++
Sbjct: 449 I---------------------KPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEP 487
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
++ C++D ++ G I A L E++ +E N V W + ++ + H
Sbjct: 488 RLQHYGCMVDILSRSGRIELAKNLIEEMPIE-PNDVIWRTFLTACSHH 534
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 190/361 (52%), Gaps = 34/361 (9%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G QLH VI K GF +H++V L++ Y S L + F + ++ +WN + G+V+
Sbjct: 296 GQQLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVR 355
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAV 196
+ AR LF+ MP ++ +SW+ +L GY + S+ GA +P+ IT+ +
Sbjct: 356 KNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLAST 415
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A+ +G + + IH Y + + D ++ LID YAKCG + A+ LF + +
Sbjct: 416 LSAVANSGTLEQGRWIHDYIISKSIHLTDNLIAG-LIDMYAKCGSVADAVLLFNHVKEKL 474
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+L W ++I A+HG ++E F ++Q +KPN +T++ VLNAC H G+
Sbjct: 475 SSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLNACCHAGMVTEGKHH 534
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC+VD+LGRAG LE+AE++ +P + +DVV+ +L A H
Sbjct: 535 FESMRREYGIPPTIKHYGCMVDLLGRAGYLEEAERLIKTMPVK-SDVVIWGSILAAARSH 593
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
GNV +GE+ ++ +++ +G V + NI A GR+ + +R+ + N + G S
Sbjct: 594 GNVALGEKAAEELAKLDPNHGASKVALCNIYADAGRWNNVSVVRKELRYENLERLSGSSG 653
Query: 415 V 415
V
Sbjct: 654 V 654
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 45/261 (17%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
+H V + G V V T LV+ Y + + + +F+ +P++N VTWN M+ G VK G
Sbjct: 166 VHGVSVQRGLDGFVIVATNLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGA 225
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLP 198
++ A +FE +P R+VVSW ++DGY R + + A T + ++
Sbjct: 226 IDMAAEMFERIPERDVVSWLVMIDGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQK 285
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI---------------- 242
A ++ AV Q +H K GF+ + V LI Y C +
Sbjct: 286 ACARHAAVLEGQQLHTVILKDGFDTH-LFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIA 344
Query: 243 ---------------FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
A +LF+++ K+ +SW++++SG+ G A++ F M
Sbjct: 345 SWNAFMAGIVRKNLMHEARQLFDNM--PEKDTISWSTLLSGYVQSGHSDMALQLFCLMLG 402
Query: 288 VGLKPNRVTFLSVLNACSHGG 308
G+KPN +T S L+A ++ G
Sbjct: 403 AGVKPNHITLASTLSAVANSG 423
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 148/318 (46%), Gaps = 44/318 (13%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSS---KLFDE 128
FL+ + + + G QLHA+ +K G S+++V +L+ Y L + LFDE
Sbjct: 11 FLVASLKSGARLRHGEQLHALAAKSGLLVSNLFVRNSLLAFYSRLPSSHAPALAHHLFDE 70
Query: 129 LPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+P R+ N ++ L + G L++A+ + EMP R+ VS+T +L R + A
Sbjct: 71 IPLALRDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMA 130
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P+E+T+ V+ A+ ++ A ++HG +RG + F I +N L+ Y
Sbjct: 131 VFRGMLAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATN-LVHAY 189
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-- 294
A + A +FE + KN V+W ++++G+ G A E FER+ P R
Sbjct: 190 AAAAQVGFARAVFE--WMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERI------PERDV 241
Query: 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT---DVVVRRILLGAC 351
V++L ++D RA + +A + + + +E+ +V + AC
Sbjct: 242 VSWL--------------VMIDGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQKAC 287
Query: 352 SFHGNVEMGERVTRKVLE 369
+ H V G+++ +L+
Sbjct: 288 ARHAAVLEGQQLHTVILK 305
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 191/358 (53%), Gaps = 36/358 (10%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
HA K G +H V +L+ +Y +LG L + ++FD ++ +WN M++G K G+L
Sbjct: 99 HAQALKCGALAHSVVTNSLLKLYCTLGLLPHARRVFDSGAALDVASWNTMVSGYGKSGDL 158
Query: 151 EYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAVLPAI 200
AR +F MP RN+VSW+ ++D A + +P + ++++L A
Sbjct: 159 AAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMMREGFKPDVVVLVSMLKAC 218
Query: 201 WQNGAVRNCQLIHGYGEKRGFNA--FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
GAV+ + H Y E GF ++ V L+D Y KCGC+ A +F+ V ++
Sbjct: 219 AHLGAVKRGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCGCMEEAWCVFD--GVRYRD 276
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG---------- 308
+V W S+I G AM+G G A+E F+RM + G PN+ TF L AC+H G
Sbjct: 277 VVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQSTFAGALCACTHTGHVDEGREIFK 336
Query: 309 -----------LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HYGCL D+LGRAGR+ +AE + L +P E ++L +C H ++
Sbjct: 337 SMWHHGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPMEPHASQWGALML-SCQMHNDI 395
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+GERV ++++E+E +GG Y +++N+ A G + DA +R++M E+ A K G SLV
Sbjct: 396 TVGERVGKRLIELEPHHGGRYAILFNLYAVNGLWDDARAIRQMMVEKGAKKDAGLSLV 453
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/569 (27%), Positives = 235/569 (41%), Gaps = 175/569 (30%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAF--------------------LL 47
+IHS L+TT + + +L +L+F S + P F L
Sbjct: 86 VNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFL 145
Query: 48 YKQLQQIYTHSHSPLRPL------------FDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
+ + + ++H P D F++S +++ C L G Q+H ++
Sbjct: 146 WNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 205
Query: 96 KVGFQSHVYVNTAL-------------------------------VNMYVSLGFLKDSSK 124
+ S V++ L ++ YV G +K + +
Sbjct: 206 XMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARE 265
Query: 125 LFD----------------------------------ELPERNLVTWNVMITGLVKWGEL 150
LFD E+P+R+L++WN MI G VK G++
Sbjct: 266 LFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKM 325
Query: 151 EYARSLFEEMPCRNVVSWTGILDGYTRMNR---------------------------SNG 183
E A LF MP R+VVSW ++DGY ++ NG
Sbjct: 326 ENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNG 385
Query: 184 ASTE---------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
E P T+L L AI Q G +H Y E GF+ + ++
Sbjct: 386 XLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSE-KL 444
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
LID YAKCG I +AL + W +IJ G A+HG+G+ A E F M+K+
Sbjct: 445 GXALIDMYAKCGSIDNAL------------IDHWNAIJXGLAIHGLGEVAFELFMEMEKL 492
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+KPB +TF+ VLNAC+H GL HYGC+VD+LGRAG +E+
Sbjct: 493 FVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILGRAGHVEE 552
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
+K +P E DVV R LL AC H N +GE V + ++ ++ N YVL+ NI A
Sbjct: 553 XKKFVEKMPIEPNDVVW-RTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYA 611
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
G + D R+R +M +R+ K PG S +
Sbjct: 612 XFGMWNDVYRIRMMMKQRDLKKIPGCSQI 640
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 189/355 (53%), Gaps = 38/355 (10%)
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE--LPERNLVTWNVMITGLVKWGELEYA 153
K G +H V L+ +Y +LG L D+ ++FD ++V+WN M++G K G+LE A
Sbjct: 109 KCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAA 168
Query: 154 RSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQN 203
R +F MP R +VSW+ ++D R ++ G +P + +++VL
Sbjct: 169 REVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHL 228
Query: 204 GAVRNCQLIHGY--GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
GA+ + +H + E+ G ++ + L+D Y KCGC+ A +F+ V+ ++V
Sbjct: 229 GALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFD--GVQSHDVVL 286
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W ++I G AM+G GK A+E F RM G PN TF+ L AC H G
Sbjct: 287 WNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMR 346
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HYGCL D+LGRAG LE+AE + L +P E L+ +C H NV +G
Sbjct: 347 DHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPME-PHASQWGALMSSCLMHNNVGVG 405
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
ERV +K++E+E +GG YV ++N+ A G + DA+ LR++M+ER A K G S +
Sbjct: 406 ERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFI 460
>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial [Vitis vinifera]
Length = 673
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 206/410 (50%), Gaps = 55/410 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+L+N ++ Y+L KAF ++K ++ D+FT++ +I +C L
Sbjct: 245 VLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKG--------DNFTFTSMINSCGVLGSCG 296
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+H +I ++ F V V +ALV+MY ++D+ K FD + +N+V+W MI G
Sbjct: 297 LGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYG 356
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G+ + A L +EM + YT P E+ + ++L + A
Sbjct: 357 QHGDGKEAMRLLQEM-----------IRVYTY----------PDELALASILSSCGNLSA 395
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+H Y + GF AF + ++N L+ Y+KCG I SA + F SV +++SWTS+
Sbjct: 396 TSEVVQVHAYVVENGFEAF-LSIANALVSAYSKCGSIGSAFQSFS--SVAEPDIISWTSL 452
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
+ +A HG+ K VE FE+M ++P++V FL VL+AC+HGG
Sbjct: 453 MGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQ 512
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C++D+LGRAG L++A + +P E + LGAC H NV +
Sbjct: 513 IMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGA-FLGACKVHRNVGLARWA 571
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ K+ ME +Y LM N+ A VG + D R+R++M ER K PG S
Sbjct: 572 SEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCS 621
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 142/324 (43%), Gaps = 49/324 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ T + L+R + L+ + QLH I K GF S+ +V +ALV+ Y G + ++ F
Sbjct: 177 NCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAF 236
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+ R+LV WNVM++ G A +F+ M V D +T + N
Sbjct: 237 DEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKG-----DNFTFTSMINSC-- 289
Query: 187 EPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
G + +C L +HG + F+ D+ V++ L+D Y+K I
Sbjct: 290 -----------------GVLGSCGLGKQVHGLIIRLSFD-LDVLVASALVDMYSKNENIE 331
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A K F+ + V KN+VSWT++I G+ HG GK A+ + M +V P+ + S+L++
Sbjct: 332 DARKAFDGMIV--KNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSS 389
Query: 304 CS-----------HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT--------DVVVR 344
C H + L A L A I S D++
Sbjct: 390 CGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISW 449
Query: 345 RILLGACSFHGNVEMGERVTRKVL 368
L+GA +FHG + G V K+L
Sbjct: 450 TSLMGAYAFHGLSKEGVEVFEKML 473
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 165/346 (47%), Gaps = 59/346 (17%)
Query: 70 TYSF---LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
T+SF ++ L + + G QLHA + K+G + + + ++++YV D K+F
Sbjct: 72 THSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMF 131
Query: 127 DELPERNLVTWNVMITG---------LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
DE+P +N+V+WN +I G LV+ G Y R + EM N ++ G+L
Sbjct: 132 DEMPLKNVVSWNTLICGVVEGNCKFALVRLG-FHYFRQMVLEMMAPNCITLNGLLR---- 186
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
AS E +++ I C+ +H + K GF++ + V + L+D+YA
Sbjct: 187 ------ASIELNDVGI---------------CRQLHCFILKSGFDS-NCFVGSALVDSYA 224
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
K G + A F+++S ++LV W ++S +A++G+ A F+ M+ G+K + TF
Sbjct: 225 KFGLVDEAQSAFDEVS--SRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTF 282
Query: 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
S++N+C +LG G +Q + + + ++ DV+V L+ S + N+
Sbjct: 283 TSMINSCG-----------VLGSCGLGKQVHGLIIRLSFDL-DVLVASALVDMYSKNENI 330
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
E + ++ + V ++ G G++ D + R++ E
Sbjct: 331 EDARKAFDGMIVK------NIVSWTTMIVGYGQHGDGKEAMRLLQE 370
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 192/346 (55%), Gaps = 45/346 (13%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
++++ V G ++D+ LFD +P R++V+W MI G K G ++ ARSLF+EMP R+VV
Sbjct: 262 NSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVV 321
Query: 167 SWTGILDGYTRMNRSNGASTEPSEI---------------TILAVLPAIWQNGAVRNCQL 211
++ ++ GY + NG E I T+L L AI Q G +
Sbjct: 322 AYNAMMGGYVQ----NGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVA 377
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
IH + E+ GF + D R+ LID Y+KCG I +A+ +FE+I + K++ W +II G A+
Sbjct: 378 IHRFIEEIGF-SLDGRLGVALIDMYSKCGSIENAMMVFENI--KEKSVDHWNAIIGGLAI 434
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------- 309
HG+G+ A + M+++ ++P+ +TF+ +LNAC H GL
Sbjct: 435 HGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQ 494
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
HYGC+VD+LGRAG +E+A+ +P E DV+ R LL AC H + +G+ V ++
Sbjct: 495 HYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRS-LLSACKTHESFNVGQPVAENLMR 553
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ + YVL N+ AG+G++ D ++R +M ++N K PG S +
Sbjct: 554 LDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWI 599
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 184/428 (42%), Gaps = 73/428 (17%)
Query: 9 TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAF----------------------- 45
+IH+ LLTT + + L +L F + +P F
Sbjct: 32 NQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHHAFEFDEKEEEEEKD 91
Query: 46 -LLYKQLQQIYTHSHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHA 92
L+ + + Y+H H P ++ D FT S +++ C + G Q+H
Sbjct: 92 PFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHG 151
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
++ K+ F S +++ L++ YV G L +S++FD +P+R+ V++N MI G VK G ++
Sbjct: 152 LLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDL 211
Query: 153 ARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
AR +F+ +P RN++SW ++ GY + +G + I N + C
Sbjct: 212 ARVVFDCIPLEERNLISWNSLIRGYAQ--SEDGILVAWQLFAKMPERDLISWNSMIDGCV 269
Query: 211 LIHGYGEKRG-FNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +G F+ DI +ID YAK G + A LF+++ +++V++ +++
Sbjct: 270 KCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMP--ERDVVAYNAMM 327
Query: 267 SGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH-GGLHYG------------ 312
G+ +G A+ F MQ G + T L L+A + G + G
Sbjct: 328 GGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGF 387
Query: 313 --------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
L+DM + G +E A + I + D ++G + HG +GE
Sbjct: 388 SLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVD--HWNAIIGGLAIHG---LGELAF 442
Query: 365 RKVLEMER 372
++EMER
Sbjct: 443 DFLMEMER 450
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 25/225 (11%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D+ T + L + + G +H I ++GF + AL++MY G ++++
Sbjct: 353 LLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMM 412
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F+ + E+++ WN +I GL G E A EM RM
Sbjct: 413 VFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEM---------------ERMR----- 452
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP +IT + +L A G V+ + + ++ C++D + G I
Sbjct: 453 -VEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEE 511
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMH---GMGKAAVENFERMQ 286
A E++ E N V W S++S H +G+ EN R+
Sbjct: 512 AKNFVEEMPFE-PNDVIWRSLLSACKTHESFNVGQPVAENLMRLD 555
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 223/485 (45%), Gaps = 110/485 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L NTLL Y+L P++A ++ + P DSFTYSFLI+ +
Sbjct: 89 TFLPNTLLRAYALNALPREAVAVFSAM------------PHRDSFTYSFLIKALSSAGVA 136
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
L +H+ + K+G YV AL++ Y G D+SK+F+E+P R++V+WN + +
Sbjct: 137 PL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAM 195
Query: 145 VKWGELEYARSLFEEM-------------------------------PCRNVVSWTGILD 173
V+ GE+E AR +F+EM P RNVVSW+ ++
Sbjct: 196 VRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVS 255
Query: 174 GYTR-----MNR----------------------SNG--------------ASTEPSEIT 192
GY + M R NG AS E
Sbjct: 256 GYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAA 315
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
++++L A ++G++ + IH Y R V N LID + KCGCI A +F D
Sbjct: 316 VVSILAACAESGSLALGKRIHRYVRTRQLGR-STHVCNALIDMFCKCGCINRADYVF-DT 373
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+ K+ VSW +II GFAMHG G A++ F +M+ G P+ VT ++VL+AC+H G
Sbjct: 374 EIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEE 433
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC++D+LGR G +++A + +P + +V+ LL A
Sbjct: 434 GRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGS-LLSA 492
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C H NVE E ++ +++ N G+Y ++ +I A G++ D + R M + K
Sbjct: 493 CRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSS 552
Query: 411 GRSLV 415
G S +
Sbjct: 553 GSSWI 557
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 195/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
L LH K+G +SHV V TA++ MY G ++ + +FD + ++N VTWN MI G
Sbjct: 88 LSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGY 147
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G+++ A +F+EMP R+++SWT ++ G+ + A P + I+
Sbjct: 148 MRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAII 207
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ H Y + F ++RVSN LID Y +CGC+ A ++F+ ++
Sbjct: 208 AALAACTNLGALSFGLWAHRYVVSQDFRN-NVRVSNSLIDLYCRCGCVEFARQVFD--TM 264
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ VTF L ACSH GL
Sbjct: 265 EKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGF 324
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
H+GCLVD+ RAGRLE A K+ +P + +VV+ LL AC
Sbjct: 325 QYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGS-LLAACR 383
Query: 353 FHGN-VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HGN + ER+ + + +++ +YV++ N+ A G++ A ++RR M K PG
Sbjct: 384 NHGNHTILAERLMKHISDLDVKGHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPG 443
Query: 412 RSLV 415
S +
Sbjct: 444 YSSI 447
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 46/192 (23%)
Query: 165 VVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVLPAI--WQNGAVRNCQLI 212
+VSWT + +R +R A+ EP+ IT +++L A + +G+ L+
Sbjct: 33 IVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFPSGSEALSDLL 92
Query: 213 HGYGEKRGFNAFDIRVS-------------------------------NCLIDTYAKCGC 241
HGY K G + + V N +ID Y + G
Sbjct: 93 HGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQ 152
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ +A+K+F+++ ++L+SWT++I+GF G + A+ F MQ G+ P+ V ++ L
Sbjct: 153 VDNAVKVFDEMP--ERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAAL 210
Query: 302 NACSH-GGLHYG 312
AC++ G L +G
Sbjct: 211 AACTNLGALSFG 222
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 58/267 (21%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L + G H + F+++V V+ +L+++Y G ++ + ++FD + +R +
Sbjct: 210 LAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTV 269
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN +I G G + F +M +G+ +P +T
Sbjct: 270 VSWNSVIVGFAANGNANESLVYFRKMQ----------EEGF-----------KPDAVTFT 308
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-----DIRVS------NCLIDTYAKCGCIF 243
L A G V + GF F D R+S CL+D Y++ G +
Sbjct: 309 GALTACSHVGLV-----------EEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLE 357
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A+K+ E + + + N V S+++ HG ER+ K +S L+
Sbjct: 358 DAIKVVESMPM-KPNEVVIGSLLAACRNHGNHTILA---ERLMK---------HISDLDV 404
Query: 304 CSHGGLHYGCLVDMLGRAGRLEQAEKI 330
H +Y L +M G+ E A K+
Sbjct: 405 KGHS--NYVILSNMYAADGKWEGASKM 429
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD 316
+ +VSWTS I+ + A F M+ G++PN +TF+S+L+AC + L D
Sbjct: 31 ETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFPSGSEALSD 90
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE-MERGNG 375
+L LG+ + + V+V +LG S G+V R R V + ME N
Sbjct: 91 LL-------HGYACKLGL--DRSHVMVGTAILGMYSKRGHV----RKARLVFDYMEDKNS 137
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+ M + G+ +A ++ M ER+ + +
Sbjct: 138 VTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISW 171
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 218/423 (51%), Gaps = 76/423 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+++ +++ Y P +A LLYK++++ SP D T + L+ C L
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEE---DGFSP-----DEVTMATLVSACAELKDLG 197
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G +LH+ I ++ + + +ALVNMY
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYA------------------------------- 226
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITIL 194
K G+L+ AR +F+++ ++V +W+ ++ GY + NRS G++ P+E+TIL
Sbjct: 227 KCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTIL 286
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
AV+ A Q G + + +H Y R + ++N LID ++KCG I +A ++F+ +S
Sbjct: 287 AVISACAQLGDLETGRWVHDY-ITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY 345
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L+SW S+++GFA+HG+G+ A+ F MQ L+P+ +TF+ VL ACSH GL
Sbjct: 346 --KDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+L RAG L +A + +P + D + +LGAC
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQ-PDGAIWGSMLGACR 462
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
+ N+E+GE R +L++E N G Y+L+ NI A + + +++R +M+E+ K PG
Sbjct: 463 VYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGC 522
Query: 413 SLV 415
S V
Sbjct: 523 SSV 525
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 186/438 (42%), Gaps = 96/438 (21%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L +N++L + ++ P++A Q YT R + D FT+ L++ C L
Sbjct: 43 VLTWNSMLRAFVNSNMPRRAL-------QSYTEMLERSRNVPDRFTFPSLLKGCALLLEF 95
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+G LH + K S +Y+ T L+NMY + G LK + LF+ + RN V W MI+G
Sbjct: 96 KVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGY 155
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+K A L+++M DG++ P E+T+ ++ A +
Sbjct: 156 MKNHCPNEALLLYKKME----------EDGFS-----------PDEVTMATLVSACAELK 194
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ +H + + + + + L++ YAKCG + +A ++F+ +S K++ +W++
Sbjct: 195 DLGVGMKLHSHIREMDMKICAV-LGSALVNMYAKCGDLKTARQVFDKLS--DKDVYAWSA 251
Query: 265 IISGFAMHGMGKAAVENF-ERMQKVGLKPNRVTFLSVLNACSH-GGLHYG---------- 312
+I G+ + A++ F E ++PN VT L+V++AC+ G L G
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRT 311
Query: 313 ----------CLVDMLGRAGRLEQAEKI----------------------ALG------- 333
L+DM + G ++ A++I LG
Sbjct: 312 QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQF 371
Query: 334 --------IPSEITDVVVRRILLGACSFHGNVEMGERVTRKV--LEMERGNGGDYVLMYN 383
P EIT + V L ACS G V+ G+++ ++ L R Y M +
Sbjct: 372 RLMQTTDLQPDEITFIGV----LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVD 427
Query: 384 ILAGVGRYVDAERLRRVM 401
+L G +A RVM
Sbjct: 428 LLCRAGLLAEAREFIRVM 445
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 226/438 (51%), Gaps = 59/438 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++N ++ ++ + + KK+ L+K++ + + FTYSFL+ CV
Sbjct: 90 TTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA--------NGFTYSFLLSACVRSRLF 141
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-----LKDSSKLFDELPERNLVTWNV 139
G Q+H + G+ S++YV T L+N+Y + G LK + LFDE+P+ N+V WN
Sbjct: 142 REGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNS 201
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPS 189
++ G V+ G+ + AR +F+EMP RNV +WT ++ G+ + ++ A E
Sbjct: 202 LLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELD 261
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEK----RGFNAFDIRVSNCLIDTYAKCGCIFSA 245
++ ++A L A + G + + IHGY E+ R + ++N LI YA CG + A
Sbjct: 262 QVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVL-VSLNNALIHMYASCGAMDLA 320
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG---LKPNRVTFLSVLN 302
KLFE+I ++N VSW+SII+GFA G G A+ F+ M G ++P+ +TF+ L
Sbjct: 321 YKLFEEIP--QRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALT 378
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HYGC+VD+L RAG L +A + +P + +
Sbjct: 379 ACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNN 438
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKV-LEMERGN--GGDYVLMYNILAGVGRYVDAERL 397
V +L G C H N E+ V + + E++ N G ++L+ N+ A GR+ D +
Sbjct: 439 AVWGALLSG-CRLHKNDEIVSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATV 497
Query: 398 RRVMDERNALKFPGRSLV 415
RR M + K GRS +
Sbjct: 498 RRNMHDIGVKKPSGRSWI 515
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 30/261 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
F +S L ++CV S+ NL + HA I GF Y+ L+++Y+S G L + K+F
Sbjct: 27 QQFIFSVL-KSCV--SFRNLA-KTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVF 82
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSN 182
+++ + WN +I G + + + LF+ M V +++ +L R +
Sbjct: 83 EDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVR----S 138
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS------------- 229
E +I ++ W N VR LI+ Y FD++ +
Sbjct: 139 RLFREGEQIHGRVLVNGYWSNLYVRT-NLINLYANGGDGGDFDLKRALYLFDEMPDSNVV 197
Query: 230 --NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
N L+ Y + G A K+F+++ +N+ +WT +++GFA +G K A+ F++M++
Sbjct: 198 GWNSLLAGYVRRGDFDGARKVFDEMP--ERNVRTWTIMVAGFAQNGQCKLALSLFDQMRR 255
Query: 288 VGLKPNRVTFLSVLNACSHGG 308
G++ ++V ++ L+AC+ G
Sbjct: 256 AGVELDQVALVAALSACAELG 276
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 212/427 (49%), Gaps = 60/427 (14%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ + + ++ Y D +AF L+ Q+ P R L+ +++ +I C+ +
Sbjct: 205 NIIAWTAMVKSYVENDEIDEAFELFYQM---------PQRNLY---SWNIMISGCINANR 252
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
N QL + Q + T LV G ++ + K FD +P +++ WN MIT
Sbjct: 253 LNEAIQLFNSMP----QRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITA 308
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------------MNRSNGASTEPSE 190
V G + A +LF MP +N+VSW ++DGY R M RSN +P+E
Sbjct: 309 YVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSN---FKPNE 365
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
TI +VL A ++ HG GF D ++N L+ TY++CG + SA +F+
Sbjct: 366 TTITSVLTAC---DSILELMQAHGLVIHLGFEQ-DKVLANGLVTTYSRCGDVLSARFIFD 421
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+ + K++VSWT++I ++ HG G A++ F RM + G KP+ +TF+ +L+ACSH GL
Sbjct: 422 QLEI--KDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLV 479
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HY CLVD+LGRAG + +A K+ +P D V LL
Sbjct: 480 KKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALL 539
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
GAC H +V + + K++E E + G YVL+ N A G++ + +R+ M ERN K
Sbjct: 540 GACRLHKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKK 599
Query: 409 FPGRSLV 415
PG S +
Sbjct: 600 EPGFSQI 606
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 142/291 (48%), Gaps = 34/291 (11%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
+P+ + +TTRI + +++ + + N L K+A ++ ++
Sbjct: 32 TPNPSKITTRIPFPVFASDTYESNVKISN-----LGLRGKVKEARKVFDEM--------- 77
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
P D+ +Y+ +I T+ N ++ + + +V ++A+++ YV G L
Sbjct: 78 ---PRRDAVSYASMI----TVYLKNKDLPQAEILFREIPERNVVADSAMISGYVRAGRLD 130
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ ++FD++ ERN+ +W +++G K G ++ A LF +MP +NVVSWT + GY +
Sbjct: 131 KARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGF 190
Query: 181 SNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
+ A E + I A++ + +N + + +R +++I +S C+
Sbjct: 191 IDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCI-- 248
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ A++LF S+ ++N VSWT++++G A +GM + A + F+ M
Sbjct: 249 ---NANRLNEAIQLFN--SMPQRNEVSWTTLVTGLARNGMMELARKYFDHM 294
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 33/214 (15%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L R+ +L PN +++ I F S Y + ++ G +K++ K+FDE+P R+
Sbjct: 23 LNRSFSSLKTPN-PSKITTRIPFPVFASDTYESNVKISNLGLRGKVKEARKVFDEMPRRD 81
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
V++ MIT +K +L A LF E+P RNVV+ + ++ GY R R + A
Sbjct: 82 AVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYVRAGRLDKAR-------- 133
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
Q+ E+ F+ L+ Y K G + A++LF +
Sbjct: 134 ----------------QVFDQMVERNVFSW------TSLVSGYFKIGNVDEAMRLFNQMP 171
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
KN+VSWT+ + G+A +G A + F +M +
Sbjct: 172 --EKNVVSWTTAVVGYAQNGFIDEARDIFNQMPE 203
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 196/412 (47%), Gaps = 68/412 (16%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF--------- 118
S+++S LI+ C L G +H + K GF SHV+V T L+ Y + G
Sbjct: 76 SYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFD 135
Query: 119 ----------------------LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSL 156
+ + +LFDE+PE+N+ TWN MI G K G E A L
Sbjct: 136 DMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFL 195
Query: 157 FEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAV 206
F +MP R+++SWT +++ Y+R R P E+T+ V+ A GA+
Sbjct: 196 FNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGAL 255
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +H Y +GF+ D+ + + LID YAKCG I AL +F ++ KNL W II
Sbjct: 256 ALGKEVHLYLVLQGFD-LDVYIGSSLIDMYAKCGSIDMALLVF--YKLQTKNLFCWNCII 312
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
G A HG + A+ F M++ ++PN VTF+S+L AC+H G
Sbjct: 313 DGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCI 372
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC+VD+L +AG LE A ++ + E + + LL C H N+E+
Sbjct: 373 APQVEHYGCMVDLLSKAGLLEDALEMIRNMTVE-PNSFIWGALLNGCKLHKNLEIAHIAV 431
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPGRSLV 415
+ ++ +E N G Y L+ N+ A R+ + ++R M + K PG S V
Sbjct: 432 QNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWV 483
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 113/267 (42%), Gaps = 43/267 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T + +I C L LG ++H + GF VY+ ++L++MY G + + +F
Sbjct: 238 DEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVF 297
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+L +NL WN +I GL G +E A +F EM + +
Sbjct: 298 YKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRI--------------------- 336
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+ +T +++L A G + + + A + C++D +K G + AL
Sbjct: 337 RPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDAL 396
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
++ +++VE + + W ++++G +H + AV+N L VL
Sbjct: 397 EMIRNMTVEPNSFI-WGALLNGCKLHKNLEIAHIAVQN----------------LMVLEP 439
Query: 304 CSHGGLHYGCLVDMLGRAGRLEQAEKI 330
+ G HY LV+M R + KI
Sbjct: 440 SNSG--HYSLLVNMYAEENRWNEVAKI 464
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 200/382 (52%), Gaps = 40/382 (10%)
Query: 70 TYSFLIRTC--VTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLF 126
T+ L+ C V+ LG LH K+G ++HV V TA++ MY G + +F
Sbjct: 67 TFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVF 126
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D + ++N VTWN MI G ++ G++ A LF+EMP R+++SWT +++G+ + A
Sbjct: 127 DFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALA 186
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P + I+A L A GA+ +H Y + F +IRVSN LID Y
Sbjct: 187 WFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKN-NIRVSNSLIDLY 245
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+CGC+ A ++F+ + E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ VT
Sbjct: 246 CRCGCVEFAREVFDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVT 303
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F L ACSH GL HYGCLVD+ RAGRLE A + +
Sbjct: 304 FTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSM 363
Query: 335 PSEITDVVVRRILLGACSFHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
P + +VV+ LL AC HG N + ER+ + + ++ + +YV++ N+ A G +
Sbjct: 364 PMKPNEVVIGS-LLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAADGIWEG 422
Query: 394 AERLRRVMDERNALKFPGRSLV 415
A ++RR M K PG S V
Sbjct: 423 ASKMRRKMKGLGLKKQPGFSSV 444
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
T K I LKL + S + VSWTS I+ + +G A + F M+ G++PN
Sbjct: 9 TRQKSSQIQRILKLNQSTS---ETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNH 65
Query: 295 VTFLSVLNAC 304
+TF+++L+ C
Sbjct: 66 ITFIALLSGC 75
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 220/418 (52%), Gaps = 45/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ Y+ A ++A L+ ++++ L D FT + L+ C G
Sbjct: 114 WNSMIGGYAQAGDTREACALFGEMRRQGF--------LGDEFTLASLLLACSQEGNLEFG 165
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H ++ G + + ALV+MY G L + + F+ +P +++V+W M+ K
Sbjct: 166 RLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKH 225
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G ++ AR F+ MP RN VSW ++ Y + + + A P E T++ VL
Sbjct: 226 GSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVL 285
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A + G + +++H Y N DI + N L+D YAKCG + +A++LF ++ +
Sbjct: 286 SACGRIGDLTVGKMVHLYIRDNIHNP-DISLINSLLDMYAKCGQVDTAIRLFREMC--NR 342
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N+VSW II G AMHG A+ F M + P+ +TF+++L++CSHGGL
Sbjct: 343 NVVSWNVIIGGLAMHGRALDAITFFRSMVR-NTSPDGITFVALLSSCSHGGLLETGQHYF 401
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+LGR G LE+A + +P + DVVV LLGAC HG
Sbjct: 402 ESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMK-PDVVVWGALLGACRIHG 460
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
NV++G++V +++LE+E +GG +VL+ N+L ++ D +RLR++M ER K G S
Sbjct: 461 NVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVS 518
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 107/407 (26%), Positives = 175/407 (42%), Gaps = 78/407 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+++NT+ Y +D P++A L++ + + L + FT F+++ C +
Sbjct: 11 VMYNTITRAYCNSDCPREALRLHRCMLRRGV--------LPNEFTLPFVVKACTRAQAWD 62
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+H V K+GF V+V AL++ Y S G L DS + FDE+ RN+V+WN MI G
Sbjct: 63 NALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYA 122
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G+ A +LF EM R G + E T+ ++L A Q G
Sbjct: 123 QAGDTREACALFGEM-------------------RRQGFLGD--EFTLASLLLACSQEGN 161
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---------- 255
+ +L+H G + D+ + L+D Y+KCG + A + FE + ++
Sbjct: 162 LEFGRLVHCLMLVSG-SPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLC 220
Query: 256 -------------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+N VSW ++IS + G A++ +++MQ G P+ T
Sbjct: 221 AQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEAT 280
Query: 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI--TDVVVRRILLGACSFH 354
+ VL+AC GR G L + + L I I D+ + LL +
Sbjct: 281 LVPVLSAC--------------GRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKC 326
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
G V+ R+ R EM N + ++ LA GR +DA R M
Sbjct: 327 GQVDTAIRLFR---EMCNRNVVSWNVIIGGLAMHGRALDAITFFRSM 370
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 118/273 (43%), Gaps = 44/273 (16%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T+ +NT++ Y +A LYKQ+Q +H +P D T ++ C +
Sbjct: 242 NTVSWNTMISCYVQRGQYHEALDLYKQMQ---SHGPAP-----DEATLVPVLSACGRIGD 293
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+G +H I + + +L++MY G + + +LF E+ RN+V+WNV+I G
Sbjct: 294 LTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGG 353
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
L G A + F M RN T P IT +A+L +
Sbjct: 354 LAMHGRALDAITFFRSM-VRN---------------------TSPDGITFVALLSSCSHG 391
Query: 204 GAVRNCQ-----LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
G + Q + H Y K ++ C++D + G + A+ L +++ + + +
Sbjct: 392 GLLETGQHYFESMRHVYNVKH-----EVEHYACMVDLLGRRGHLEKAVCLIKEMPM-KPD 445
Query: 259 LVSWTSIISGFAMHG---MGKAAVENFERMQKV 288
+V W +++ +HG +GK ++ ++ +
Sbjct: 446 VVVWGALLGACRIHGNVKIGKQVIKQLLELEGI 478
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 213/410 (51%), Gaps = 53/410 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T+++ Y L + A LL + +Q ++P F T + ++ C +L G
Sbjct: 293 WTTMMNGYILNGDARSALLLCQMMQ------FESVKPNF--VTLASVLSACASLYSLKHG 344
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH + +S V V TAL++MY + S ++F + ++ WN +I+G +
Sbjct: 345 RCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHN 404
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A LF++M V +P++ T+ ++LPA ++
Sbjct: 405 GLSRKAIELFKQMLMEAV---------------------DPNDATLNSLLPAYAFLTDLQ 443
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +HGY + GF + I V+ LID Y+KCG + SA +F I + K++++W++II+
Sbjct: 444 QARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIA 502
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+ MHG G+ A+ F++M + G+KPN +TF S+L+ACSH GL
Sbjct: 503 GYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMS 562
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY C++D+LGRAGRLE+A ++ + + V LLG+C H NVE+GE +
Sbjct: 563 LRTDHYTCVIDLLGRAGRLEEAYELIRTMAFR-PNHAVWGALLGSCVIHENVELGEVAAK 621
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E+E GN G+YVL+ NI + VGR+ DAE +R +M+ K P SL+
Sbjct: 622 WLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLI 671
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 161/326 (49%), Gaps = 54/326 (16%)
Query: 8 TTRIHSHLLT----TNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ----------- 52
T +IH+H +T ++ HH L ++L Y++ A L+ +L+
Sbjct: 37 TKQIHAHTITLGLLSSPYSHH--LLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMI 94
Query: 53 QIYTHSH-------------SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99
++YT+S + R D++TY F+I+ C P +G +HA GF
Sbjct: 95 RMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGF 154
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
S +V +L+ MY++ G ++ + ++FD + ER LV+WN MI G K G ++ A +F+
Sbjct: 155 DSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDW 214
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
M G EP T+++VLP + + +H E +
Sbjct: 215 MI---------------------GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVK 253
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
DI V N L+D YAKCG + A +F ++ +++++VSWT++++G+ ++G ++A+
Sbjct: 254 NLGE-DISVWNSLLDMYAKCGNMDEAQMIFYEM--DKRDVVSWTTMMNGYILNGDARSAL 310
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACS 305
+ MQ +KPN VT SVL+AC+
Sbjct: 311 LLCQMMQFESVKPNFVTLASVLSACA 336
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 126/287 (43%), Gaps = 53/287 (18%)
Query: 71 YSFLIRTCVT-LSYPNLGTQLHAVISKVGFQSHVYVN---TALVNMYVSLGFLKDSSKLF 126
Y L++ C + S PN Q+HA +G S Y + ++L Y G + KLF
Sbjct: 21 YQSLLQRCTSRKSIPNT-KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLF 79
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DEL +L +WN MI G A LF +M + S D YT
Sbjct: 80 DELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQM----LASGRRWPDNYTY--------- 126
Query: 187 EPSEITILA--VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P I +LP + GA LIH GF++ D V N L+ Y CG +
Sbjct: 127 -PFVIKACGDYLLPEM---GA-----LIHARTVMSGFDS-DAFVQNSLMAMYMNCGEMEV 176
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F D+ ER LVSW ++I+G+ +G K A+ F+ M G++P+ T +SVL C
Sbjct: 177 ARRVF-DLMRER-TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVC 234
Query: 305 SH-------GGLH--------------YGCLVDMLGRAGRLEQAEKI 330
S+ +H + L+DM + G +++A+ I
Sbjct: 235 SYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMI 281
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 53/399 (13%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
++A LLY + Q + P D+ T+ F+++ C L G Q HA + K+GFQS
Sbjct: 107 REAILLYNTMLQRSS-------PFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQS 159
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
VY+N +L++ Y S G L+ + +FD++P+R+LV+WN MI V +GE E A LF +
Sbjct: 160 DVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQ 219
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHGYGEKRG 220
+ DGYT + N + + A+ +W + +RNC G R
Sbjct: 220 QQFFEP-----DGYTIQSVINACA------GLCALSLGMWAHAFLLRNC----GVSVARD 264
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ V+N L+D Y KCG + A ++FE +++ ++ SW S+I GFAMHG G+ A+E
Sbjct: 265 H----VLVNNSLLDMYCKCGSLDIATQIFE--GMQKHDVTSWNSMILGFAMHGKGELALE 318
Query: 281 NFERMQKVG-LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDM 317
FERM ++ PN +TF+ VL+AC+H + HYGCLVD+
Sbjct: 319 CFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDI 378
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN-GG 376
L RAG +++A ++ +P + V+ R +L C + +VE+ E + R++LE E + G
Sbjct: 379 LARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESEEADSSG 438
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVL+ + A R+ D +R++M LK PG SL+
Sbjct: 439 VYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLI 477
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 121/285 (42%), Gaps = 47/285 (16%)
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
+ SL L + ++FD++ N WN++I + + R IL
Sbjct: 66 FSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKRE--------------AIL 111
Query: 173 DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
T + RS S P T VL A A+ + H + K GF + D+ ++N L
Sbjct: 112 LYNTMLQRS---SPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQS-DVYINNSL 167
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
I YA CG + SA +F+ + +++LVSW ++I F + G + A++ F + Q+ +P
Sbjct: 168 IHFYASCGSLESAKNVFDKMP--QRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEP 225
Query: 293 NRVTFLSVLNAC-----------SHGGLHYGC--------------LVDMLGRAGRLEQA 327
+ T SV+NAC +H L C L+DM + G L+ A
Sbjct: 226 DGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIA 285
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
+I G+ DV ++ + HG E+ +++ + R
Sbjct: 286 TQIFEGMQKH--DVTSWNSMILGFAMHGKGELALECFERMIRISR 328
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 217/423 (51%), Gaps = 76/423 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+++ +++ Y P +A LLYK++++ SP D T + L+ C L
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEE---DGFSP-----DEVTMATLVSACAELKDLG 197
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G +LH+ I ++ + + +ALVNMY
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYA------------------------------- 226
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITIL 194
K G+L+ AR +F+++ ++V +W+ ++ GY + NRS G++ P+E+TIL
Sbjct: 227 KCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTIL 286
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
AV+ A Q G + + +H Y R + ++N LID ++KCG I +A ++F+ +S
Sbjct: 287 AVISACAQLGDLETGRWVHDY-ITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY 345
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L+SW S+++G A+HG+G+ A+ F MQ L+P+ +TF+ VL ACSH GL
Sbjct: 346 --KDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+L RAG L +A + +P + D + +LGAC
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQ-PDGAIWGSMLGACR 462
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
+ N+E+GE R +LE+E N G Y+L+ NI A + + +++R +M+E+ K PG
Sbjct: 463 VYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGC 522
Query: 413 SLV 415
S V
Sbjct: 523 SSV 525
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 186/438 (42%), Gaps = 96/438 (21%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L +N++L + ++ P++A Q YT R + D FT+ L++ C L
Sbjct: 43 VLTWNSMLRAFVNSNMPRRAL-------QSYTEMLERSRNVPDRFTFPSLLKGCALLLEF 95
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+G LH + K S +Y+ T L+NMY + G LK + LF+ + RN V W MI+G
Sbjct: 96 KVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGY 155
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+K A L+++M DG++ P E+T+ ++ A +
Sbjct: 156 MKNHCPNEALLLYKKME----------EDGFS-----------PDEVTMATLVSACAELK 194
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ +H + + + + + L++ YAKCG + +A ++F+ +S K++ +W++
Sbjct: 195 DLGVGMKLHSHIREMDMKICAV-LGSALVNMYAKCGDLKTARQVFDQLS--DKDVYAWSA 251
Query: 265 IISGFAMHGMGKAAVENF-ERMQKVGLKPNRVTFLSVLNACSH-GGLHYG---------- 312
+I G+ + A++ F E ++PN VT L+V++AC+ G L G
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRT 311
Query: 313 ----------CLVDMLGRAGRLEQAEKI----------------------ALG------- 333
L+DM + G ++ A++I LG
Sbjct: 312 QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQF 371
Query: 334 --------IPSEITDVVVRRILLGACSFHGNVEMGERVTRKV--LEMERGNGGDYVLMYN 383
P EIT + V L ACS G V+ G+++ ++ L R Y M +
Sbjct: 372 HLMQTTDLQPDEITFIGV----LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVD 427
Query: 384 ILAGVGRYVDAERLRRVM 401
+L G +A RVM
Sbjct: 428 LLCRAGLLAEAREFIRVM 445
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 138 NVMITGLVKWGELE--YARSLFEEMPCRNVVSWTGILDGYTRMN---RSNGASTE----- 187
N +I ++ G L YA S+F +V++W +L + N R+ + TE
Sbjct: 14 NKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73
Query: 188 ---PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P T ++L + +++HG K ++ D+ + L++ YA CG + S
Sbjct: 74 RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHS-DLYIETTLLNMYAACGDLKS 132
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A LFE + +N V WTS+ISG+ + A+ +++M++ G P+ VT ++++AC
Sbjct: 133 ARFLFERMG--HRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190
Query: 305 S 305
+
Sbjct: 191 A 191
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 221/485 (45%), Gaps = 110/485 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L NTLL Y+L P A L+ + P DSFTYSFLI+ +
Sbjct: 123 TFLPNTLLRAYALNALPHAAVSLFSAM------------PQRDSFTYSFLIKALSSSGLT 170
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
L +H+ + K+G YV AL++ Y G D+SK+F+E+P R+ V+WN + +
Sbjct: 171 PL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAM 229
Query: 145 VKWGELEYARSLFEEMP----------------------------C---RNVVSWTGILD 173
V+ GE+ AR +F+EMP C RNVVSW+ ++
Sbjct: 230 VRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVS 289
Query: 174 GYTR-----MNR----------------------SNG--------------ASTEPSEIT 192
GY + M R NG A+ E
Sbjct: 290 GYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAA 349
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
++++L A ++G++ + IH Y R V N +ID + KCGC+ A +F D
Sbjct: 350 VVSILAACAESGSLALGKRIHRYVRTRQLGR-STHVCNAMIDMFCKCGCVNRADYVF-DT 407
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+ K+ VSW +II GFAMHG G A++ F +M+ G +P+ VT ++VL+AC+H G
Sbjct: 408 EIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEE 467
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC++D+LGR G +E+A + +P + +V+ LL A
Sbjct: 468 GRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGS-LLSA 526
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C H NVE E ++ +++ N G+Y ++ NI A G++ D + R M + K
Sbjct: 527 CRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSA 586
Query: 411 GRSLV 415
G S +
Sbjct: 587 GSSWI 591
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 213/410 (51%), Gaps = 53/410 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T+++ Y L + A LL + +Q ++P F T + ++ C +L G
Sbjct: 293 WTTMMNGYILNGDARSALLLCQMMQ------FESVKPNF--VTLASVLSACASLYSLKHG 344
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH + +S V V TAL++MY + S ++F + ++ WN +I+G +
Sbjct: 345 RCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHN 404
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A LF++M V +P++ T+ ++LPA ++
Sbjct: 405 GLSRKAIELFKQMLMEAV---------------------DPNDATLNSLLPAYAFLTDLQ 443
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +HGY + GF + I V+ LID Y+KCG + SA +F I + K++++W++II+
Sbjct: 444 QARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIA 502
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+ MHG G+ A+ F++M + G+KPN +TF S+L+ACSH GL
Sbjct: 503 GYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMS 562
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY C++D+LGRAGRLE+A ++ + + V LLG+C H NVE+GE +
Sbjct: 563 LRTDHYTCVIDLLGRAGRLEEAYELIRTMAFR-PNHAVWGALLGSCVIHENVELGEVAAK 621
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E+E GN G+YVL+ NI + VGR+ DAE +R +M+ K P SL+
Sbjct: 622 WLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLI 671
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 158/324 (48%), Gaps = 50/324 (15%)
Query: 8 TTRIHSHLLT----TNSLLHHTL--------LFNTLLHFYSLADSPKKAFLL-YKQLQQI 54
T +IH+H +T ++ HH L +F H L D + L + + ++
Sbjct: 37 TKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRM 96
Query: 55 YTHSH-------------SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
YT+S + R D++TY F+I+ C P +G +HA GF S
Sbjct: 97 YTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDS 156
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
+V +L+ MY++ G ++ + ++FD + ER LV+WN MI G K G ++ A +F+ M
Sbjct: 157 DAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMI 216
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
G EP T+++VLP + + +H E +
Sbjct: 217 ---------------------GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNL 255
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
DI V N L+D YAKCG + A +F ++ +++++VSWT++++G+ ++G ++A+
Sbjct: 256 GE-DISVWNSLLDMYAKCGNMDEAQMIFYEM--DKRDVVSWTTMMNGYILNGDARSALLL 312
Query: 282 FERMQKVGLKPNRVTFLSVLNACS 305
+ MQ +KPN VT SVL+AC+
Sbjct: 313 CQMMQFESVKPNFVTLASVLSACA 336
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 126/287 (43%), Gaps = 53/287 (18%)
Query: 71 YSFLIRTCVT-LSYPNLGTQLHAVISKVGFQSHVYVN---TALVNMYVSLGFLKDSSKLF 126
Y L++ C + S PN Q+HA +G S Y + ++L Y G + KLF
Sbjct: 21 YQSLLQRCTSRKSIPNT-KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLF 79
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DEL +L +WN MI G A LF +M + S D YT
Sbjct: 80 DELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQM----LASGRRWPDNYTY--------- 126
Query: 187 EPSEITILA--VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P I +LP + GA LIH GF++ D V N L+ Y CG +
Sbjct: 127 -PFVIKACGDYLLPEM---GA-----LIHARTVMSGFDS-DAFVQNSLMAMYMNCGEMEV 176
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F D+ ER LVSW ++I+G+ +G K A+ F+ M G++P+ T +SVL C
Sbjct: 177 ARRVF-DLMRER-TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVC 234
Query: 305 SH-------GGLH--------------YGCLVDMLGRAGRLEQAEKI 330
S+ +H + L+DM + G +++A+ I
Sbjct: 235 SYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMI 281
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 195/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG LH K+G ++HV V TA++ MY G +K + +FD + ++N VTWN MI G
Sbjct: 66 LGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGY 125
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G++ A LF++MP +++SWT +++G+ + A +P + I+
Sbjct: 126 MRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAII 185
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ +H Y + F ++RVSN LID Y +CGC+ A ++F+ +
Sbjct: 186 AALNACTNLGALSLGLWVHRYVMSQDFKN-NVRVSNSLIDLYCRCGCVEFAREVFDKM-- 242
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G KPN VTF L ACSH GL
Sbjct: 243 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGL 302
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE A K+ +P + +VV+ LL AC
Sbjct: 303 RFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGS-LLAACR 361
Query: 353 FHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG N + ER+ + + ++ + +YV++ N+ A ++ A R+RR M K PG
Sbjct: 362 NHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADAKWEGASRMRRKMKGLGLKKQPG 421
Query: 412 RSLV 415
S +
Sbjct: 422 FSSI 425
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 46/261 (17%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L +LG +H + F+++V V+ +L+++Y G ++ + ++FD++ +R +
Sbjct: 188 LNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTV 247
Query: 135 VTWNVMITGLVKWG----ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
V+WN +I G G L Y R + EE N V++TG L T S
Sbjct: 248 VSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGAL-------------TACSH 294
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ ++ + +R Q + KR +N + I CL+D Y++ G + ALK+
Sbjct: 295 VGLV--------DEGLRFFQSM-----KRDYNISPRIEHYGCLVDLYSRAGRLEDALKVV 341
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ + + + N V S+++ HG ER+ K LS LN SH
Sbjct: 342 QSMPM-KPNEVVIGSLLAACRNHGNNTVLA---ERLMK---------HLSDLNVKSHS-- 386
Query: 310 HYGCLVDMLGRAGRLEQAEKI 330
+Y L +M + E A ++
Sbjct: 387 NYVILSNMYAADAKWEGASRM 407
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 203/390 (52%), Gaps = 44/390 (11%)
Query: 63 RPLFDSFTYSFL-IRTCVTLSYPNLGTQLHAVISKVGF----QSHVYVNTALVNMYVSLG 117
R L F + L +RT + +Y G A +++ F + V++ ++ YV+ G
Sbjct: 64 RALKSGFAAADLFVRTALVEAYAKAG---RADLARAAFDEAPRRDVFLCNVMLAAYVTRG 120
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
+ ++ ++FD + ER++V+WN MI G GE++ AR +F M R+ SW+ ++ YT+
Sbjct: 121 EVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTK 180
Query: 178 MNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
RS A P T+++VL A GA+ +H + E G D++
Sbjct: 181 GRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVE-LDVK 239
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+ LID YAKCG I +++++F + V K++++W+S+I G A HG G A+ F RM
Sbjct: 240 LGTALIDMYAKCGDIENSVRVFHSMPV--KDVLTWSSMIIGLANHGFGHDALSLFSRMLS 297
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
GL+PN VTF+ VL +C+H GL HYGC+VD+LGR+G +E
Sbjct: 298 EGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIE 357
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+A+++ +P E D V+ R LLGAC + NVE+ E K+ ++ G YVL+ NI
Sbjct: 358 EAKQLIRDMPFE-PDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIY 416
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A + +RR + + PGRS +
Sbjct: 417 AQANSWEGVAEMRRTLRRERIQRIPGRSSI 446
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 115/266 (43%), Gaps = 44/266 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+++++ Y+ K A L+++++ + D T ++ C + +G
Sbjct: 171 WSSMMSAYTKGRRSKDALELWREMRAACVNP--------DCTTMVSVLSACSDMGALAVG 222
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + G + V + TAL++MY G +++S ++F +P ++++TW+ MI GL
Sbjct: 223 AEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANH 282
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G A SLF M + +P+E+T + VL + G V
Sbjct: 283 GFGHDALSLFSRMLSEGL---------------------QPNEVTFIGVLISCTHLGLVS 321
Query: 208 NCQ-------LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
+ + ++HG K ++ C++D + G I A +L D+ E + V
Sbjct: 322 DGKKYFSSMSVVHGVTPK-------VQHYGCMVDLLGRSGHIEEAKQLIRDMPFE-PDAV 373
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQ 286
W +++ ++ + A E +++
Sbjct: 374 IWRALLGACRIYKNVEVAEEAMAKLR 399
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 181/315 (57%), Gaps = 36/315 (11%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
++V+W M+ GL + G ++ AR +F+ MP RN+VSW ++ GY + +R A E+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 193 ILAV----------LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
L V L A GA+ + I+ + E+ G D +++ ++D Y KCGC+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIE-VDAKLATAVVDMYCKCGCV 281
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A ++F+ S+ + L +W +I GFA+HG A+E F +M+ G+ P+ VT L+VL
Sbjct: 282 DEAWRVFD--SLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLT 339
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC+H G HYGC+VD+ GRAG+L++A+K+ +P + D
Sbjct: 340 ACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMD-PD 398
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+ V LLGAC HG+V++GE + +V++++ N G YVL+ N+LAG GR+ + ++RR+
Sbjct: 399 LAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRL 458
Query: 401 MDERNALKFPGRSLV 415
MDERN K GRS++
Sbjct: 459 MDERNVSKEAGRSVI 473
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 190/366 (51%), Gaps = 38/366 (10%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
N G ++HA+I G + V+V+T L+ +Y G L S ++FD++P R+ +TWN M+
Sbjct: 133 NPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQY 192
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------------STEPSEI 191
+ G+++ A LF MP R+VVSW ++ GY R A + P+
Sbjct: 193 ARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP 252
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ +L A G + +H Y E+ N D + CLID Y KCG I +AL++FE
Sbjct: 253 TMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDRCLIDMYCKCGSIDNALQVFEK 311
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +++L SWT++I G AMHG A+ F+ MQ G+ P+ VT + VLNAC+HGGL
Sbjct: 312 -APRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVD 370
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC++D+LGR GRL++A + +P + + V+ L
Sbjct: 371 EGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD-PNTVIWGAFLS 429
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC HGN+E+G+ ++ ++ + V++ ++ A ++ R RR M+ K
Sbjct: 430 ACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKT 489
Query: 410 PGRSLV 415
PG S +
Sbjct: 490 PGCSSI 495
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 143/341 (41%), Gaps = 73/341 (21%)
Query: 87 GTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ +H ++ K G ++ TAL++ Y +LG + +LFDE+PE+ LV M V
Sbjct: 29 ASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHV 88
Query: 146 KWGELEYARSLFEEM-----------------PCRNVVSWTGILDGYTRMNRSNGASTEP 188
G+ A ++F +M C SWT R N
Sbjct: 89 ASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTA---------RRNPGKKIH 139
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIRVS---NCLIDTYAK 238
+ I + P ++ + +LI YGE +R F+ R + N ++ YA+
Sbjct: 140 ALIVTSGIEPDVFV-----STELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYAR 194
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM---QKVGLKPNRV 295
G + +A +LF +++ R+++VSW ++++G+ + G + A+ F +M + PN
Sbjct: 195 HGKVDTAYELF--LAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP 252
Query: 296 TFLSVLNACSHGG-LHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T ++L AC+ G L G CL+DM + G ++ A ++
Sbjct: 253 TMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKA 312
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
P + D+ ++ + HG R + +M + NG
Sbjct: 313 PRK-RDLFSWTTVICGLAMHGRATDALR----MFDMMQDNG 348
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y +A ++A L++Q+ + + P P T S ++ C G
Sbjct: 216 WNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP-----TMSTILGACAGAGCLETG 270
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVK 146
+HA I + Y++ L++MY G + ++ ++F++ P +R+L +W +I GL
Sbjct: 271 IWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAM 330
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G A +F+ M + NG P ++T++ VL A G V
Sbjct: 331 HGRATDALRMFD-------------------MMQDNGIC--PDDVTLVGVLNACAHGGLV 369
Query: 207 RNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
L + Y + F I C+ID + G + A + + ++ N V W +
Sbjct: 370 DE-GLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD-PNTVIWGAF 427
Query: 266 ISGFAMHG---MGKAAVENFERMQ 286
+S +HG +GK A E R+
Sbjct: 428 LSACKVHGNMELGKIAAEELTRLD 451
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 213/423 (50%), Gaps = 68/423 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLY-KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+NTL+ Y+ + +P ++ L++ + L Q SP P D FT+ FLI+ L
Sbjct: 103 WNTLIRAYASSSNPHQSLLIFLRMLHQ------SPDFP--DKFTFPFLIKAASELEELFT 154
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G H ++ KV S V++ +L++ Y G L ++F P R++V+WN MIT V+
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQ 214
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G E A LF+EM +NV +P+ IT++ VL A +
Sbjct: 215 GGCPEEALELFQEMETQNV---------------------KPNGITMVGVLSACAKKSDF 253
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +H Y E+ + +SN ++D Y KCG + A +LF+ + K++VSWT+++
Sbjct: 254 EFGRWVHSYIERNRIXE-SLTLSNAMLDMYTKCGSVEDAKRLFDKMP--EKDIVSWTTML 310
Query: 267 SGF------------AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
G+ AMHG GK A+ F +MQ+ +KPN VTF ++L ACSH GL
Sbjct: 311 VGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR 370
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HY C+VD+LGRAG LE+A ++ +P V LLGAC+
Sbjct: 371 TFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA-ASVWGALLGACT 429
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NV + E+ +++E+E GN G YVL+ NI A G++ LR++M + K PG
Sbjct: 430 IHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGC 489
Query: 413 SLV 415
S +
Sbjct: 490 SSI 492
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 47/291 (16%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS--- 181
FD L+T L + L+YA+ +F+++P N+ +W ++ Y +
Sbjct: 64 FFDPFSASRLIT----AAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119
Query: 182 --------NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
+ + P + T ++ A + + + HG K + D+ + N LI
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS-DVFILNSLI 178
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
YAKCG + ++F ++ R+++VSW S+I+ F G + A+E F+ M+ +KPN
Sbjct: 179 HFYAKCGELGLGYRVF--VNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPN 236
Query: 294 RVTFLSVLNACS-HGGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
+T + VL+AC+ +G ++DM + G +E A+++
Sbjct: 237 GITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFD 296
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
+P + D+V +L G ++GE + L M G+G D + +++
Sbjct: 297 KMPEK--DIVSWTTMLV-----GYAKIGEYDAAQGLAM-HGHGKDAIALFS 339
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 220/451 (48%), Gaps = 82/451 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT+L Y+ A A L+ ++ P+ D+ +++ L+ T V +
Sbjct: 139 WNTMLEAYAAAGRVGDACALFDRM------------PVRDAGSWNILLATLVRSGSVDKA 186
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN--------- 138
+L + + V T +V+ G + ++ LFD +PERN+V+WN
Sbjct: 187 RELFGRMP----ERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRN 242
Query: 139 ----------------------VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
+M+TG ++ +L+ AR LF+EMP RNVV+WT +++GY
Sbjct: 243 HRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYL 302
Query: 177 RMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
+ +S A T P+++T L L A A+ + +H K F FD
Sbjct: 303 KGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQ-FDA 361
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
V + L++ YAKCG I A KLF D+S E K+L+SW II+ +A HG+G A+ +E+MQ
Sbjct: 362 FVESALMNVYAKCGEIGLARKLF-DLSRE-KDLISWNGIIAAYAHHGVGIEAILLYEKMQ 419
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
+ G +PN VT++ +L+ACSH GL HY CL+D+ RAGRL
Sbjct: 420 ENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRL 479
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+ A+++ + + V LLG C+ HGN +G R +L+ E N G Y L+ NI
Sbjct: 480 DDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNI 539
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A G++ +A +R M+ R K PG S +
Sbjct: 540 YASAGKWKEAAEIRSEMNNRGLKKQPGCSWI 570
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 7/209 (3%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
Q +V ++ Y + G + D+ LFD +P R+ +WN+++ LV+ G ++ AR LF
Sbjct: 133 QRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGR 192
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ---NGAVRNCQLIHGYG 216
MP R+V++WT ++DG R + + A + V+ W +G RN ++
Sbjct: 193 MPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVS--WNAMISGYTRNHRIDEALD 250
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
DI N ++ + + + A +LF+++ +N+V+WT++++G+ +
Sbjct: 251 LFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMP--ERNVVTWTTMMNGYLKGKQSE 308
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACS 305
A+ F M G +PN+VTFL L+ACS
Sbjct: 309 LALGLFSGMLMAGTRPNQVTFLGALDACS 337
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 16/189 (8%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
TALV+ Y G L+D+ +LFD P+ RN+VTW +++G + ++ A +LF+ MP RN
Sbjct: 77 TALVSAYARRGMLRDARELFDR-PDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRN 135
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILA------VLPAIWQNGAVRNCQLIHGYGEK 218
VVSW +L+ Y R A + + +L + ++G+V + + G +
Sbjct: 136 VVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPE 195
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
R D+ ++D A+ G + A LF+ S+ +N+VSW ++ISG+ + A
Sbjct: 196 R-----DVMAWTTMVDGVARSGKVDEARVLFD--SMPERNVVSWNAMISGYTRNHRIDEA 248
Query: 279 VENFERMQK 287
++ F +M +
Sbjct: 249 LDLFMKMPE 257
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 219/424 (51%), Gaps = 51/424 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQ-QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+N++++ + SP KA L+K+++ + SH T ++ C +
Sbjct: 202 WNSMINGFVQKGSPDKALELFKKMESEDVKASH---------VTMVGVLSACAKIRDLEF 252
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G ++ + I + ++ + A+++MY G ++D+ +LFD + E++ VTW M+ G
Sbjct: 253 GRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 312
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILA 195
+ E AR + MP +++V+W ++ Y + + N A + + ++IT+++
Sbjct: 313 SEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVS 372
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L A Q GA+ + IH Y +K G + V++ LI Y+KCG + A ++F SVE
Sbjct: 373 TLSACAQVGALELGRWIHSYIKKNGIK-MNFYVTSALIHMYSKCGDLEKAREVFN--SVE 429
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++++ W+++I G AMHG G AV+ F +MQ+ +KPN VTF +V ACSH GL
Sbjct: 430 KRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 489
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKI--ALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGR+G LE+A K A+ IP + V LLGAC
Sbjct: 490 LFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS---VWGALLGAC 546
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H N+ + E ++LE+E N G +VL+ NI A G++ + LR+ M K PG
Sbjct: 547 KIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPG 606
Query: 412 RSLV 415
S +
Sbjct: 607 CSSI 610
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 103/431 (23%), Positives = 188/431 (43%), Gaps = 82/431 (19%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
++ +NTL+ Y A P ++ L + S S P + +T+ FLI+ +S
Sbjct: 95 NSFTWNTLIRAY--ASGPDPVCSIWAFLDMV--SSESQCYP--NKYTFPFLIKAAAEVSS 148
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+LG LH + K S V+V +L++ Y S G L + K+F + E+++V+WN MI G
Sbjct: 149 LSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 208
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V+ G + A LF++M +V + S +T++ VL A +
Sbjct: 209 FVQKGSPDKALELFKKMESEDV---------------------KASHVTMVGVLSACAKI 247
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI----------- 252
+ + + Y E+ N ++ ++N ++D Y KCG I A +LF+ +
Sbjct: 248 RDLEFGRRVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM 306
Query: 253 ------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGLKPN 293
++ +K++V+W ++IS + +G A+ F +Q + +K N
Sbjct: 307 LDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLN 366
Query: 294 RVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
++T +S L+AC+ G L G L+ M + G LE+A ++
Sbjct: 367 QITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFN 426
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-RGNGGDYVLMYNILAGVGRY 391
+ E DV V ++G + HG + K+ E + NG + ++ + G
Sbjct: 427 SV--EKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 484
Query: 392 VDAERLRRVMD 402
+AE L M+
Sbjct: 485 DEAESLFYKME 495
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 36/223 (16%)
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------------SNGASTEP 188
I L + LEYAR +F+E+P N +W ++ Y S+ + P
Sbjct: 72 IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYP 131
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
++ T ++ A + ++ Q +HG K + D+ V+N LI Y CG + SA K+
Sbjct: 132 NKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGS-DVFVANSLIHCYFSCGDLDSACKV 190
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-G 307
F +++ K++VSW S+I+GF G A+E F++M+ +K + VT + VL+AC+
Sbjct: 191 F--TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIR 248
Query: 308 GLHYG--------------------CLVDMLGRAGRLEQAEKI 330
L +G ++DM + G +E A+++
Sbjct: 249 DLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 291
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 221/429 (51%), Gaps = 52/429 (12%)
Query: 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82
H+ + + +L+ + A ++A +L+ Q++++ S D FT + ++ C++
Sbjct: 310 HNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVAS--------DQFTLATVLGVCLSQK 361
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
++G QLHA G S V V ALV MY G + ++ F+ +P R++++W MIT
Sbjct: 362 DISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMIT 421
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS--------------NGASTEP 188
+ G++E AR F++MP RNV+SW +L Y M R G T+
Sbjct: 422 AFSQAGDVEKAREYFDKMPERNVISWNSMLATY--MQRGYWEEGLKVYIQMLREGVKTD- 478
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
IT + A + I EK GF++ ++ V+N ++ Y++CG I A K+
Sbjct: 479 -WITFSTSISACADLAVLILGNQILAQAEKLGFSS-NVSVANSVVTMYSRCGQIEEAQKM 536
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F I + KNLVSW ++++G+A +G G+ +E FE+M +G P++++++SVL+ CSH G
Sbjct: 537 FSSIVM--KNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSG 594
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
H+ C+VD+LGRAG+LEQA+ + +P + + +
Sbjct: 595 FVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFK-PNAAIWGA 653
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LL AC HGN ++ E + +LE++ G Y L+ NI + G+ +R++M ++
Sbjct: 654 LLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGV 713
Query: 407 LKFPGRSLV 415
K PG S +
Sbjct: 714 RKNPGCSWI 722
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C +L + +LHA + +G +S +++ L+NMY + G + D+ ++F + N+
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
+WN MI+G G++ A LFE+MP R+ VSW ++ GY NG +
Sbjct: 71 YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFH----NG--------ELE 118
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF----- 249
A + A G ++ +HG+ EK F D V ++D Y KCG + A K+F
Sbjct: 119 ATIKASGSLGYLKLALQLHGFAEKFDF-GIDTCVETSVLDMYIKCGAMDFAQKVFCRTPN 177
Query: 250 --------------EDISVER----------KNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ SV++ ++ VSW ++IS + HG G + F M
Sbjct: 178 PSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEM 237
Query: 286 QKVGLKPNRVTFLSVLNACS-----HGGLHY---------------GC-LVDMLGRAGRL 324
G +PN +T+ SVL+AC+ G H GC L+DM + GRL
Sbjct: 238 WNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRL 297
Query: 325 EQAEKIALGI 334
E A ++ G+
Sbjct: 298 ESARQVFDGL 307
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 182/442 (41%), Gaps = 117/442 (26%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL------------------------- 62
+N++++ YS S KKA L+ ++ + T S + +
Sbjct: 183 WNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGF 242
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP +S TY+ ++ C ++ G LHA I ++ VY L++MY G L+ +
Sbjct: 243 RP--NSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESA 300
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
++FD L E N V+W +I G+ + G E A LF +M V S
Sbjct: 301 RQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVAS--------------- 345
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ T+ VL + + +H + RG ++ + V+N L+ YAKCG +
Sbjct: 346 ------DQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDS-SVPVANALVTMYAKCGDV 398
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ---------------- 286
+ A FE + + ++++SWT++I+ F+ G + A E F++M
Sbjct: 399 WKANHAFELMPI--RDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQ 456
Query: 287 ---------------KVGLKPNRVTFLSVLNACSHGGLHY-------------------- 311
+ G+K + +TF + ++AC+ +
Sbjct: 457 RGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSV 516
Query: 312 -GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE- 369
+V M R G++E+A+K+ + +V++ ++ G + G+ RKV+E
Sbjct: 517 ANSVVTMYSRCGQIEEAQKM-------FSSIVMKNLVSWNAMMAGYAQNGQ--GRKVIEI 567
Query: 370 ----MERGNGGDYVLMYNILAG 387
+ GN D + ++L+G
Sbjct: 568 FEKMLNIGNVPDQISYVSVLSG 589
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 218/413 (52%), Gaps = 55/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+L++ L+ Y+ + ++AF ++ ++ + S + P + F+ S +++ C +++
Sbjct: 317 VILWSFLISRYAQSYQNEQAFEMFLRMMR------SSVVP--NEFSLSGVLQACANVAFL 368
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+LG Q+H ++ K+G++S ++V AL+++Y +++S ++F L + N V+WN +I G
Sbjct: 369 DLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGY 428
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ G E A S+F+EM +V+S +++T +VL A
Sbjct: 429 CQSGFAEDALSVFQEMRAAHVLS---------------------TQVTFSSVLRACANTA 467
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
++++ IH EK FN D V N LIDTYAKCGCI ALK+FE S+ + ++VSW +
Sbjct: 468 SIKHTVQIHSLIEKSTFNN-DTIVCNSLIDTYAKCGCIRDALKVFE--SIIQCDVVSWNA 524
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
IISG+A+HG A+E F RM K KPN VTF+++L+ C GL
Sbjct: 525 IISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDH 584
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HY C+V +LGRAGRL A K IPS + +V R LL +C H NV +G+
Sbjct: 585 RIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSP-MVWRALLSSCVVHKNVALGKF 643
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
KVLE+E + YVL+ N+ A G LR+ M K G S V
Sbjct: 644 SAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWV 696
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 32/295 (10%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+ + + + + ++ YS D P+ A + +++ + +P + F
Sbjct: 203 HARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRM------AGAKP--NPFVL 254
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
+ +++ V LS LG +H K + +V AL++MY G+++D+ +F+ +P
Sbjct: 255 TSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPH 314
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
+++ W+ +I+ YA+S E + + RM RS S P+E
Sbjct: 315 DDVILWSFLIS--------RYAQSYQNEQA----------FEMFLRMMRS---SVVPNEF 353
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
++ VL A + Q IH K G+ + ++ V N L+D YAKC + ++L++F
Sbjct: 354 SLSGVLQACANVAFLDLGQQIHNLVIKLGYES-ELFVGNALMDVYAKCRNMENSLEIFR- 411
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
S+ N VSW +II G+ G + A+ F+ M+ + +VTF SVL AC++
Sbjct: 412 -SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACAN 465
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 148/344 (43%), Gaps = 54/344 (15%)
Query: 31 LLHFYSLADSP-KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQ 89
LL +S + P ++ LQ + S P DS+ + L++ C+ G
Sbjct: 9 LLPTFSQPNVPLRRNLAANAALQWLDDELASLALPKLDSYACARLLQRCIARGDARAGRA 68
Query: 90 LHAVISKVG--FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+HA + + G Q + L+N+Y LG L + +LFD +PERN+V++ ++ G
Sbjct: 69 VHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALR 128
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A LF R+ R TIL VL A+ G
Sbjct: 129 GGFEEAAGLFR------------------RLQREGHEVNHFVLTTILKVLVAMDAPGL-- 168
Query: 208 NCQLIHGYGEKRGF--NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
C IH K G NAF V + LID Y+ CG + A +F+ I K+ V+WT++
Sbjct: 169 TC-CIHACACKLGHDRNAF---VGSSLIDAYSLCGAVSHARCVFDGII--WKDAVTWTAM 222
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA--CSHG-----GLH-------- 310
+S ++ + + + A+ F +M+ G KPN SVL A C G+H
Sbjct: 223 VSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLC 282
Query: 311 ------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
G L+DM + G +E A + IP + DV++ L+
Sbjct: 283 DTEPHVGGALLDMYAKCGYIEDARTVFEIIPHD--DVILWSFLI 324
>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
Length = 460
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 206/415 (49%), Gaps = 75/415 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
NT+L + + P+ A L+++ L D+ TY L++ C L G
Sbjct: 87 LNTVLRIAAGSPRPRVALELHRRRLA-----------LPDTHTYPPLLQACARLLALREG 135
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LHA +K GF + V+V +LV++Y + G + + K+FDE+P R
Sbjct: 136 ECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG-------------- 181
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
RN+VSW +L+ + R N G P TI++VL
Sbjct: 182 ---------------RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVL 226
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A + GA+ + +H Y EK G + VSN LID YAKCG + A ++FE++ + R
Sbjct: 227 TACAEFGALALGRRVHVYVEKVGL-VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGR- 284
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+VSWTS+I G A +G GK A+E F M++ L P +T + VL ACSH GL
Sbjct: 285 TVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYF 344
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
H GC+VD+LGRAGR+E+A + +P E + VV R LLG+C+ H
Sbjct: 345 DRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLE-PNAVVWRTLLGSCAMHK 403
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
+E+G+ +++E++ G+ GDYVL+ N+ A VG + D LR+ M + K P
Sbjct: 404 KLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNP 458
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 208/392 (53%), Gaps = 51/392 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T + ++ C + S G Q+HA V+ + +++ + + ALV+MY + ++ +
Sbjct: 251 DEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLV 310
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD +P RN+V+ M+ G + ++ AR +F M +NVVSW ++ GYT+ NG +
Sbjct: 311 FDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQ----NGEN 366
Query: 186 TEPSEITILAVLPAIWQN-------------------GAVRNCQLI-HGYGEKRGFNAFD 225
E + +L +IW G + Q++ HG+ + G + D
Sbjct: 367 EEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEES-D 425
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
I V N LID Y KCG + +FE + VER ++VSW ++I G+A +G G A+E F +M
Sbjct: 426 IFVGNSLIDMYMKCGMVEDGCLVFERM-VER-DVVSWNAMIVGYAQNGYGTNALEIFRKM 483
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGR 323
G KP+ VT + VL+ACSH GL H+ C+VD+LGRAG
Sbjct: 484 LVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGC 543
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
L++A + +P + D VV LL AC HGN+E+G+ V K++E++ N G YVL+ N
Sbjct: 544 LDEANDLIQTMPMQ-PDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSN 602
Query: 384 ILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ A +GR+ D R+R+ M +R +K PG S +
Sbjct: 603 MYAELGRWKDVVRVRKQMRQRGVIKQPGCSWI 634
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 134/251 (53%), Gaps = 13/251 (5%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
DS ++ L+ +CV ++HA I K F S +++ LV+ Y G+ +D+ K
Sbjct: 16 FLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARK 75
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD +P+RN ++N +++ L K+G+L+ A ++F+ MP + SW ++ G+ + +R A
Sbjct: 76 VFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEA 135
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLID 234
+E + + A+ + + + IH K + D+ + + L+D
Sbjct: 136 LRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRY-LLDVYMGSALVD 194
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y+KCG + A + F+ ++V +N+VSW S+I+ + +G A+E F M G++P+
Sbjct: 195 MYSKCGVVACAQRAFDGMAV--RNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDE 252
Query: 295 VTFLSVLNACS 305
+T SV++AC+
Sbjct: 253 ITLASVVSACA 263
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 62/339 (18%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
+ + +++ + C L+ N+G Q+HA+ISK + VY+ +ALV+MY G + + +
Sbjct: 148 VLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQR 207
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
FD + RN+V+WN +IT + G A +F M NG
Sbjct: 208 AFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF-------------------VMMMDNG- 247
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP EIT+ +V+ A A+R IH KR D+ + N L+D YAKC +
Sbjct: 248 -VEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNE 306
Query: 245 ALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMG 275
A +F+ + + KN+VSW ++I+G+ +G
Sbjct: 307 ARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGEN 366
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI- 334
+ AV F +++ + P TF ++LNAC++ L D+ + GR + + G
Sbjct: 367 EEAVRLFLLLKRESIWPTHYTFGNLLNACAN-------LADL--KLGRQAHTQILKHGFW 417
Query: 335 --PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
E +D+ V L+ G VE G V +++E +
Sbjct: 418 FQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERD 456
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 212/416 (50%), Gaps = 59/416 (14%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+++ ++ ++ Y+ + KA L+ + S +RP FT+ +I C L
Sbjct: 274 NSITWSAMITGYAQSGDSDKALKLFSSMHL------SGIRP--SEFTFVGVINACSDLGA 325
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G Q+H + K+GF+S +YV TALV+MY + D+ K FD L E ++V W MI G
Sbjct: 326 AWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGG 385
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V+ GE E A SL+ M GIL P+E+T+ +VL A
Sbjct: 386 YVQNGENEDALSLYGRMEME------GIL---------------PNELTMASVLKACSSL 424
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
A+ + IH K GF ++ + + L YAKCGC+ +F + ++++SW
Sbjct: 425 AALEQGKQIHARTVKYGF-GLEVPIGSALSTMYAKCGCLKDGTLVFRRMPA--RDVISWN 481
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
++ISG + +G GK A+E FE MQ G KP+ VTF+++L+ACSH GL
Sbjct: 482 AMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDE 541
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD--VVVRRILLGACSFHGNVEM 359
HY C+VD+L RAG+L++A + S D + + RI+LGAC + N E+
Sbjct: 542 FGMDPRVEHYACMVDILSRAGKLKEAIEFT---ESATIDHGMCLWRIILGACRNYRNYEL 598
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G K++E+ YVL+ +I + +GR+ D ER+RR+M R K PG S +
Sbjct: 599 GAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWI 654
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 153/363 (42%), Gaps = 55/363 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ F ++ ++ N G Q+H + K G S V V ALV MY G L D+ + F
Sbjct: 208 NEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTF 267
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+ ++N +TW+ MITG + G+ + A LF M +
Sbjct: 268 ETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGI--------------------- 306
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
PSE T + V+ A GA + +H Y K GF + I V L+D YAKC I A
Sbjct: 307 RPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFES-QIYVMTALVDMYAKCSSIVDAR 365
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K F+ ++ ++V WTS+I G+ +G + A+ + RM+ G+ PN +T SVL ACS
Sbjct: 366 KGFD--YLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSS 423
Query: 307 -GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
L G L M + G L+ + +P+ DV+
Sbjct: 424 LAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR--DVISWN 481
Query: 346 ILLGACSFHGNVEMGERVTRKVLEME-RGNGGDYVLMYNILAGVGRYVDAER----LRRV 400
++ S +G G+ EM+ G DYV NIL+ ER R +
Sbjct: 482 AMISGLSQNG---CGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538
Query: 401 MDE 403
DE
Sbjct: 539 FDE 541
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 132/281 (46%), Gaps = 30/281 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N +++ YS P + + + Q++ + +P ++ T++ + TL G
Sbjct: 74 WNCIINGYS-QHGPSGSSHVMELFQRMRAENTAP-----NAHTFAGVFTAASTLVDAAGG 127
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
HAV K+ V+V ++L+NMY G ++ K+FD +PERN V+W MI+G
Sbjct: 128 RLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQ 187
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
A LF R+ R +E +VL A+ V
Sbjct: 188 KLAAEALGLF-------------------RLMRRE--EEGENEFVFTSVLSALTLPELVN 226
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
N + IH K G + + V N L+ YAKCG + AL+ FE S KN ++W+++I+
Sbjct: 227 NGKQIHCIAVKNGLLSI-VSVGNALVTMYAKCGSLDDALQTFETSS--DKNSITWSAMIT 283
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
G+A G A++ F M G++P+ TF+ V+NACS G
Sbjct: 284 GYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLG 324
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 23/217 (10%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G LHA I K S VY+ +LVN+Y L+++ +F+ + +++V+WN +I G +
Sbjct: 25 GKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQ 83
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G P + + +++ + RM N T P+ T V A
Sbjct: 84 HG------------PSGS----SHVMELFQRMRAEN---TAPNAHTFAGVFTAASTLVDA 124
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+L H K + D+ V + L++ Y K G A K+F+ ++ +N VSW ++I
Sbjct: 125 AGGRLAHAVAIKMD-SCRDVFVGSSLMNMYCKAGLTPEARKVFD--TMPERNSVSWATMI 181
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
SG+A + A+ F M++ N F SVL+A
Sbjct: 182 SGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSA 218
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 186/348 (53%), Gaps = 45/348 (12%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGL 144
LG + H +++ V ALV+MY G + + F +P ++N+V+WN M++
Sbjct: 171 LGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAF 230
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ GELE A +LF+EM A+ P + T +A L A Q G
Sbjct: 231 ARAGELEEALALFQEM---------------------QAAAVRPDDATFVAALGACAQLG 269
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ + +H Y + G +A D V N L+D YAKCG + A ++F+ ++ R+++ ++TS
Sbjct: 270 ALDTGRWLHAYMGRMGHSA-DGVVGNALLDMYAKCGAVDQATEVFDGMA--RRDVYTYTS 326
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I G AMHG G+ A+ F MQ+ G+ PN VT L VL AC H GL
Sbjct: 327 MILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPEPR 386
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VDMLGRAGRL++AE++ +P +D ++ LL AC HG+VE ERV R+
Sbjct: 387 IEHYGCVVDMLGRAGRLDKAEELIAAMPVH-SDALIWSSLLAACRAHGDVERAERVMRR- 444
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + GDYVLM N A GR+ +A ++R M K PG SL+
Sbjct: 445 -RVADADAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLI 491
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 41/261 (15%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ ++ A ++A L++++Q + +RP D T+ + C L + G
Sbjct: 223 WNTMMSAFARAGELEEALALFQEMQA------AAVRP--DDATFVAALGACAQLGALDTG 274
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LHA + ++G + V AL++MY G + ++++FD + R++ T+ MI GL
Sbjct: 275 RWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMH 334
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A SLF M A P+E+T+L VL A G V
Sbjct: 335 GRGEDALSLFAGM---------------------QRAGVTPNEVTLLGVLTACCHAGLVE 373
Query: 208 N-CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
Q ++ E R I C++D + G + A +L + V L+ W+S++
Sbjct: 374 EGLQQLNAMPEPR------IEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALI-WSSLL 426
Query: 267 SGFAMHGMGKAAVENFERMQK 287
+ HG VE ER+ +
Sbjct: 427 AACRAHG----DVERAERVMR 443
>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 655
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 206/414 (49%), Gaps = 57/414 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV--TLSY 83
+++N ++ Y P++AF ++ ++ + D FT+S L+ L Y
Sbjct: 234 VMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNG--------DEFTFSSLLSVISDDALEY 285
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+ G Q+H+++ + F S V V +AL+NMY + D+ ++FDE+ RN+V WN MI G
Sbjct: 286 YDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVG 345
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
G+ L +EM + +G+ P E+TI +++ +
Sbjct: 346 FGNHGDGNEVMKLVKEM----------LREGFL-----------PDELTISSIISSCGYA 384
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
A+ +H + K F + V+N LI Y+KCG I SA K FE S + +LV+WT
Sbjct: 385 SAITETLQVHAFAVKLSCQDF-LSVANSLISAYSKCGSITSAFKCFELTS--QPDLVTWT 441
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
S+I +A HG+ + + E FE+M G+KP+R+ FL VL+AC+H GL
Sbjct: 442 SLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNA 501
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HY CLVD+LGR G + +A +I +P E+ D +G+C H N+E+ +
Sbjct: 502 YQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEV-DSDTLGAFIGSCKLHSNMELAK 560
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K+ +E +Y +M NI A + D ER+R+ M+++ K PG S +
Sbjct: 561 LAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWI 614
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 151/325 (46%), Gaps = 49/325 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T++ LI C + +G QLH KVGF +V ALV +Y GF++++ ++F
Sbjct: 166 DHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVF 225
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
++ R+LV WNVM++ V E A +F M R++ NG
Sbjct: 226 CDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSM----------------RLDVVNG--- 266
Query: 187 EPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
E T ++L I + A+ +H ++ F++ D+ V++ LI+ YAK I
Sbjct: 267 --DEFTFSSLLSVI-SDDALEYYDFGKQVHSLVLRQSFDS-DVLVASALINMYAKSENII 322
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A ++F+++S+ +N+V+W ++I GF HG G ++ + M + G P+ +T S++++
Sbjct: 323 DARRVFDEMSI--RNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISS 380
Query: 304 CSHG------------GLHYGCLVDMLGRAGRLEQAEKIALGIPS-----EIT---DVVV 343
C + + C D L A L A I S E+T D+V
Sbjct: 381 CGYASAITETLQVHAFAVKLSC-QDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVT 439
Query: 344 RRILLGACSFHGNVEMGERVTRKVL 368
L+ A +FHG E + K+L
Sbjct: 440 WTSLIYAYAFHGLAEKSTEMFEKML 464
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G QLHA + K GF + + ++++Y+ +D+ KLF+ELP RN+V+WN+MI V
Sbjct: 79 GKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASV- 137
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G + S +G+ ++ R P IT ++ Q +
Sbjct: 138 -GRNDENES-------------SGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDI 183
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+H + K GF+ D V L+ YAKCG + +A ++F D+S ++LV W ++
Sbjct: 184 EMGVQLHCFTVKVGFD-LDCFVGCALVGLYAKCGFVENARRVFCDVSC--RDLVMWNVMV 240
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311
S + + + + A F M+ + + TF S+L+ S L Y
Sbjct: 241 SCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEY 285
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 193/354 (54%), Gaps = 37/354 (10%)
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSK-LFDELPERNLVTWNVMITGLVKWGELEYAR 154
K G +H V +L+ +Y SLG L + + L+ ++V+WN M++G K G+L AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165
Query: 155 SLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNG 204
+F MP RN+VSW+ ++D R +R P + +++VL A G
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225
Query: 205 AVRNCQLIHGYGEKRGFNAF--DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
AV + +H Y E F ++ + L+D Y KCGC+ A ++F+ V R+++V W
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFD--GVHRRDVVLW 283
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
++I G AM+G G+ A+E F RM + G PN TF++VL AC+H G
Sbjct: 284 NAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD 343
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HYGCL D+LGRAG +E+AE + L +P E L+ +C H ++ +GE
Sbjct: 344 YGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPME-PHASQWGALMSSCQMHNDINVGE 402
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
RV ++++E+E +GG YV+++N+ A GR+ +A +R++M++R A K G S +
Sbjct: 403 RVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFI 456
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 132/403 (32%), Positives = 206/403 (51%), Gaps = 56/403 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
H + N+L+ +S +P F IYTH HS L ++FT+ FL+++
Sbjct: 73 HVFICNSLIRAFSHNHTPHTPF-------SIYTHMHSN-SILPNNFTFPFLLKSLADFKG 124
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+ G +H + K+G +YV +L+N+Y S G + ++FDE+P R++V+W V+ITG
Sbjct: 125 LSEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITG 184
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ A FE+M VV P+ +T++ L A
Sbjct: 185 YRSAERYDDALIAFEQMQYAGVV---------------------PNHVTMVNALSACADF 223
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA+ IH + + G+ FD+ + LID Y KCG I L +F S++ KN+ +W
Sbjct: 224 GALEMGVWIHEFIRRSGWE-FDVILGTSLIDMYGKCGRIEEGLVVFR--SMKEKNVFTWN 280
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
S+I G A+ G AV F RM++ G+K + VT ++VL ACSH G+
Sbjct: 281 SLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHSGMVQMGRQIFGSLMNG 340
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY C++D+L RAG L++A ++ +P E V+ L G C HG++E+
Sbjct: 341 KYEFFPGVKHYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWGAFLAG-CRAHGDLELS 399
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
E RK++E+E GNG YVL+ NI A +GR+ D E++RR+M E
Sbjct: 400 EFAARKLVELEPGNGAYYVLLSNIYAEMGRWSDVEKVRRLMKE 442
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 186/340 (54%), Gaps = 36/340 (10%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+++ Y+ +G + ++ LFD++P R++++WN ++ G G++E +F++MP RNV SW
Sbjct: 43 MISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSW 102
Query: 169 TGILDGYTRMNR-----------SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
G++ GY + R + S P++ T+ VL A + GA + +H YGE
Sbjct: 103 NGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGE 162
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
G+N D+ V N LID Y KCG I A+++F+ I +R++L+SW ++I+G A HG G
Sbjct: 163 TLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGI--KRRDLISWNTMINGLAAHGHGTE 220
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A+ F M+ G+ P++VTF+ VL AC H GL H GC+V
Sbjct: 221 ALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVV 280
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
D+L RAG L QA + +P + D V+ LLGA + V++GE +++++E N
Sbjct: 281 DLLSRAGFLTQAVEFINKMPVK-ADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNP 339
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++V++ NI GR+ DA RL+ M + K G S +
Sbjct: 340 ANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWI 379
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 117/271 (43%), Gaps = 48/271 (17%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDE 128
T + ++ C L + G +H +G+ V V AL++MY G ++ + ++F
Sbjct: 137 TMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKG 196
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ R+L++WN MI GL G A +LF EM +++G S P
Sbjct: 197 IKRRDLISWNTMINGLAAHGHGTEALNLFHEM-------------------KNSGIS--P 235
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIFSALK 247
++T + VL A G V + L + F+ +I C++D ++ G + A++
Sbjct: 236 DKVTFVGVLCACKHMGLVED-GLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVE 294
Query: 248 LFEDISVERKNLVSWTSIISGFAMH---GMGKAAVENFERMQKVGLKP-NRVTFLSVLNA 303
+ V + + V W +++ ++ +G+ A+E + L+P N F+ + N
Sbjct: 295 FINKMPV-KADAVIWATLLGASKVYKKVDIGEVALEEL-----IKLEPRNPANFVMLSN- 347
Query: 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334
+ G AGR + A ++ + +
Sbjct: 348 -------------IYGDAGRFDDAARLKVAM 365
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 210/410 (51%), Gaps = 55/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL Y+ P+KA LY Q+ + S L P D FT L+ C + + G
Sbjct: 278 WNALLCGYAQNSDPRKALDLYLQM------TDSGLDP--DWFTIGSLLLACSRMKSLHYG 329
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + G ++ +L+++Y+ G + LFD + R+LV+WNVMI G +
Sbjct: 330 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 389
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A +LF +M + DG +P EI I+ V A Q A+R
Sbjct: 390 GLPDEAINLFRQM----------LSDG-----------IQPYEIAIMCVCGACSQLSALR 428
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + K DI VS+ +ID YAK GCI + ++F+ + K++ SW II+
Sbjct: 429 LGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQRIFD--RLREKDVASWNVIIA 485
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+ +HG GK A+E FE+M ++GLKP+ TF +L ACSH GL
Sbjct: 486 GYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIE 545
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY C+VDMLGRAGR++ A ++ +P + D + LL +C HGN+ +GE+V
Sbjct: 546 PKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD-PDSRIWSSLLSSCRIHGNLGLGEKVAN 604
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K+LE+E +YVL+ N+ AG G++ D R+R M + K G S +
Sbjct: 605 KLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWI 654
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 146/325 (44%), Gaps = 49/325 (15%)
Query: 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ-------------- 52
V R+H + + + +L ++ YS+ SP + +++ +L+
Sbjct: 123 VGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 182
Query: 53 ---QIYTHSHSPLRPLF-------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+++ + S L D+FT +I+ C L LG +H + +K+ S
Sbjct: 183 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 242
Query: 103 VYVNTALVNMYVSLGFLKDSSK-LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
V+V AL+ MY G ++++ K +FD + + + +WN ++ G + + A
Sbjct: 243 VFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKA-------- 294
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
LD Y +M S +P TI ++L A + ++ + IHG+ + G
Sbjct: 295 ----------LDLYLQMTDSG---LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL 341
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
A D + L+ Y CG F+A LF+ +E ++LVSW +I+G++ +G+ A+
Sbjct: 342 -AVDPFIGISLLSLYICCGKPFAAQVLFD--GMEHRSLVSWNVMIAGYSQNGLPDEAINL 398
Query: 282 FERMQKVGLKPNRVTFLSVLNACSH 306
F +M G++P + + V ACS
Sbjct: 399 FRQMLSDGIQPYEIAIMCVCGACSQ 423
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVIS-KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L++ C +G +LH ++S F + +NT ++ MY G DS +FD+L +
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
NL WN +++ + E A S+F E+ +S T +P T
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSEL-----ISVT---------------EHKPDNFT 210
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+ V+ A + Q+IHG K + D+ V N LI Y KCG + A+K D+
Sbjct: 211 LPCVIKACAGLLDLGLGQIIHGMATKMDLVS-DVFVGNALIAMYGKCGLVEEAVKRVFDL 269
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHY 311
++ K + SW +++ G+A + + A++ + +M GL P+ T S+L ACS LHY
Sbjct: 270 -MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHY 328
Query: 312 G 312
G
Sbjct: 329 G 329
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 117/258 (45%), Gaps = 35/258 (13%)
Query: 19 NSLLHHTLL-FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
+ + H +L+ +N ++ YS P +A L++Q+ ++P +
Sbjct: 369 DGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS------DGIQPY--EIAIMCVCGA 420
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C LS LG +LH K ++V++++++MY G + S ++FD L E+++ +W
Sbjct: 421 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 480
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
NV+I G G + A LFE+M R+ +P + T +L
Sbjct: 481 NVIIAGYGIHGRGKEALELFEKM---------------LRLG------LKPDDFTFTGIL 519
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKCGCIFSALKLFEDISVE 255
A G V + + + + + + ++ + C++D + G I AL+L E++ +
Sbjct: 520 MACSHAGLVEDG--LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD 577
Query: 256 RKNLVSWTSIISGFAMHG 273
+ + W+S++S +HG
Sbjct: 578 PDSRI-WSSLLSSCRIHG 594
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 195/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG LH K+G ++HV V TA++ MY G + + +FD + ++N VTWN MI G
Sbjct: 38 LGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGY 97
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G++ A LF+EM R+++SWT +++G+ + A +P + I+
Sbjct: 98 MRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAII 157
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ IH Y + F ++RVSN LID Y +CGC+ A ++F+ +
Sbjct: 158 AALAACTNLGALSFGLWIHRYVMSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFD--KM 214
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ VTF L ACSH GL
Sbjct: 215 EKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL 274
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+ RAGRLE A K+ +P + +VV+ LL AC
Sbjct: 275 RYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQSMPMKPNEVVIGS-LLAACK 333
Query: 353 FHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG N + ER+ + + ++ + +YV++ N+ A G++ A ++RR M K PG
Sbjct: 334 NHGNNTLLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPG 393
Query: 412 RSLV 415
S +
Sbjct: 394 FSSI 397
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 48/262 (18%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L + G +H + F+++V V+ +L+++Y G ++ + ++FD++ +R +
Sbjct: 160 LAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 219
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN +I G G SLF Y R + G +P +T
Sbjct: 220 VSWNSVIVGFAANGNAH--ESLF-----------------YFRKMQEEG--FKPDAVTFT 258
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS------NCLIDTYAKCGCIFSALKL 248
L A G V L + KR D R+S C++D Y++ G + ALK+
Sbjct: 259 GALTACSHVGLVEE-GLRYFQTMKR-----DYRISPRIEHYGCIVDLYSRAGRLEDALKV 312
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
+ + + + N V S+++ HG ER+ K LS LN SH
Sbjct: 313 VQSMPM-KPNEVVIGSLLAACKNHGNNTLLA---ERLMK---------HLSDLNVKSHS- 358
Query: 309 LHYGCLVDMLGRAGRLEQAEKI 330
+Y L +M G+ E A K+
Sbjct: 359 -NYVILSNMYAADGKWEGASKM 379
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 146/466 (31%), Positives = 239/466 (51%), Gaps = 67/466 (14%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHH-----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYT 56
PS +N + HLL+ + + T+L+N ++ ++ + +P K+ + Q+ + T
Sbjct: 66 PSGSNSSAH---HLLSAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQM--LLT 120
Query: 57 HSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVS 115
S RP D+ TYSFL+ C + G Q+H+ V++ + S+V++ + LVN Y +
Sbjct: 121 DS----RP--DAHTYSFLLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAA 174
Query: 116 L-----GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+ L + K+FD++ ERN+V WN M+ G ++ G L+ AR +F EMP RNVVSWT
Sbjct: 175 VVGGEGAALASARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTT 234
Query: 171 ILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ GY + ++ A E ++ +LA L A + G ++ IH Y +
Sbjct: 235 MISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDT- 293
Query: 221 FNAFDIRV----SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
F + RV +N LI YA CG I A ++F + ++ VSWTS+I+ FA G +
Sbjct: 294 FVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFR--WMPERSAVSWTSLITAFAKQGYAQ 351
Query: 277 AAVENFERMQKVG---LKPNRVTFLSVLNACSHGGL----------------------HY 311
A +E F MQ++G +P+ +TF+ VL ACSH GL HY
Sbjct: 352 AVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHY 411
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK-VLEM 370
GC+VD+L RAG L++A+++ +P + + V LLG C F+ N E+ V++K V E
Sbjct: 412 GCMVDLLSRAGFLDEAQELIATMPVKPNN-AVWGALLGGCRFYRNAELASLVSQKLVAEP 470
Query: 371 ERGNGGDYV-LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ Y+ L+ + A ++ D +R+ M K G+S V
Sbjct: 471 DPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGVKKPAGQSWV 516
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 211/431 (48%), Gaps = 57/431 (13%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-PKKAFLLYKQLQQIYTHSHSPLRPLF 66
T+I + N ++++ ++ L ++AD +A L+ ++Q ++P
Sbjct: 198 ATKIFKLMPDPNVVMYNAMIAG-FLQMETMADEFANEAMYLFFEMQS------RGMKP-- 248
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
FT+S +++ C T+ G Q+HA I K QS ++ ALV +Y G ++D K F
Sbjct: 249 SEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCF 308
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
P+ ++V+W +I G V+ G+ E +LF E+ + G
Sbjct: 309 HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL----------LFSG-----------R 347
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P E TI +L A AV++ + IH Y K G F I + N I YAKCG I SA
Sbjct: 348 KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSAN 406
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
F++ + ++VSW+ +IS A HG K AV+ FE M+ G+ PN +TFL VL ACSH
Sbjct: 407 MTFKE--TKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSH 464
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GGL H C+VD+LGRAGRL +AE + E D V+
Sbjct: 465 GGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFE-GDPVMW 523
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
R LL AC H + G+RV +V+E+E YVL+YNI G + A +R +M +R
Sbjct: 524 RSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDR 583
Query: 405 NALKFPGRSLV 415
K PG S +
Sbjct: 584 GVKKEPGLSWI 594
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G LH K+G V V TAL++ Y +G L+D++K+F +P+ N+V +N MI G ++
Sbjct: 163 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 222
Query: 147 WGEL--EYARS---LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+ E+A LF EM R + +PSE T ++L A
Sbjct: 223 METMADEFANEAMYLFFEMQSRGM---------------------KPSEFTFSSILKACS 261
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A + IH K + D + N L++ Y+ G I LK F S + ++VS
Sbjct: 262 TIEAFECGKQIHAQIFKYNLQS-DEFIGNALVELYSLSGSIEDGLKCFH--STPKLDVVS 318
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
WTS+I G +G + + F + G KP+ T +L+AC++
Sbjct: 319 WTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 363
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 30/265 (11%)
Query: 47 LYKQLQQIYTHSH-SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
Y ++ ++ + S LR D FT+S + C LG +HA+I+ G V +
Sbjct: 21 FYHEVMNLFKEARMSDLR--LDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLL 78
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
+L++MY G + + +F+ E + V+WN +I G V+ G + L +M +
Sbjct: 79 TNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL 138
Query: 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+ L + SN +S+ + +++HG K G + D
Sbjct: 139 NLNSYALGSALKACGSNFSSS-------------------IECGKMLHGCAVKLGLD-LD 178
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF-AMHGMGK----AAVE 280
+ V L+DTYAK G + A K+F+ + N+V + ++I+GF M M A+
Sbjct: 179 VVVGTALLDTYAKIGDLEDATKIFK--LMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 236
Query: 281 NFERMQKVGLKPNRVTFLSVLNACS 305
F MQ G+KP+ TF S+L ACS
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACS 261
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 36/210 (17%)
Query: 160 MPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
MP RNVVSW ++ GYT+M + + + T L + +R
Sbjct: 1 MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+LIH G + ++N LID Y KCG I A +FE S + + VSW S+I+G+
Sbjct: 61 RLIHALITVSGLGG-PVLLTNSLIDMYCKCGRIDWARLVFE--SADELDSVSWNSLIAGY 117
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH--------GGLHYGC-------- 313
G + +M + GL N S L AC G + +GC
Sbjct: 118 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL 177
Query: 314 -------LVDMLGRAGRLEQAEKIALGIPS 336
L+D + G LE A KI +P
Sbjct: 178 DVVVGTALLDTYAKIGDLEDATKIFKLMPD 207
>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
Length = 596
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 192/372 (51%), Gaps = 50/372 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ + SF ++ S QLHA++ ++G + V + T L++ Y G L + ++F
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVF 178
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSL-------FEEMPCRNVVSWTGILDGYTRMN 179
DE+ R++ TWN ++ GL + E A L F E+P R
Sbjct: 179 DEMSVRDVATWNALLAGLAQGTEPNLALVLFRRLAGSFRELPPRE--------------- 223
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
EP+E+T++A L A Q GA+++ H + G ++RV N LID Y+KC
Sbjct: 224 -------EPNEVTVVAALSACAQLGALKDGLAAHDFARTIG-AVGNVRVCNALIDMYSKC 275
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + AL++F I +E + LVS+ + I +MHG G+ A++ F+ M ++P+ VT+L+
Sbjct: 276 GSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEM-PARIEPDEVTYLA 334
Query: 300 VLNACSHGGL------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
VL C+H GL HYG +VD+LGRAGRL +A + + +P D+
Sbjct: 335 VLGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFP-ADI 393
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ + LLGA HGNV++ E K+ ++ GDYVL+ N+ A R+VD R+R M
Sbjct: 394 VLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTM 453
Query: 402 DERNALKFPGRS 413
+ K PG S
Sbjct: 454 RSNDVKKVPGFS 465
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 200/382 (52%), Gaps = 37/382 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SFT+S L++ C ++ NLG Q HA ++ VYV +++MYV G + + K+FD
Sbjct: 150 SFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFD 209
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---------- 177
E+PER++++W +I + G +E A LFE +P +++V+WT ++ G+ +
Sbjct: 210 EMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 269
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTY 236
+R + E+T+ + A Q GA + +K G++ D + + + LID Y
Sbjct: 270 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 329
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRV 295
+KCG + A+ +F +S+ KN+ S++S+I G A HG + A++ F M + +KPN V
Sbjct: 330 SKCGNVEEAVNVF--VSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTV 387
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ L ACSH GL HY C+VD+LGRAGRL++A ++
Sbjct: 388 TFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKT 447
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+ E V LLGAC H N ++ E + E+E G+Y+L+ N+ + G +
Sbjct: 448 MSVE-PHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGG 506
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+R+++ E+ K P S V
Sbjct: 507 VLSVRKLIKEKGLKKTPAVSWV 528
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 145/372 (38%), Gaps = 89/372 (23%)
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C+ L N Q+H + + G Y+ T L+ LG D
Sbjct: 60 CINL---NQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDP--------------- 101
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STE 187
Y R + E + RN WT ++ GYT + + A
Sbjct: 102 --------------YPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEIT 147
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEK-RGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P T A+L A G + + H + RGF F + V N +ID Y KCG I A
Sbjct: 148 PVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF-CF-VYVGNTMIDMYVKCGSIVCAR 205
Query: 247 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKA 277
K+F+++ S+ K++V+WT++++GFA + +
Sbjct: 206 KVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQE 265
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337
A+E F+RM+K G++ + VT ++AC+ LG + ++A +IA
Sbjct: 266 ALEYFDRMEKSGIRADEVTVAGYISACAQ-----------LGASKYADRAVQIAQKSGYS 314
Query: 338 ITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396
+D VV+ L+ S GNVE V + M N Y M LA GR +A
Sbjct: 315 PSDHVVIGSALIDMYSKCGNVEEAVNV---FVSMNNKNVFSYSSMILGLATHGRAQEALD 371
Query: 397 LRRVMDERNALK 408
L M + A+K
Sbjct: 372 LFHYMVTQTAIK 383
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 222/403 (55%), Gaps = 54/403 (13%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y+ +D K+A L+ +++Q S + P ++FT++ +++ C +L NLG Q+H+ +
Sbjct: 281 YAQSDKSKEALELFCRMRQ-----SSVVVP--NNFTFASVLQACASLVLLNLGNQIHSCV 333
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
KVG S+V+V+ AL+++Y G +++S KLF E+N V WN +I G V+ G+ E A
Sbjct: 334 LKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKAL 393
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
+LF M G +P+E+T +VL A A+ + IH
Sbjct: 394 NLFSNML---------------------GLDIQPTEVTYSSVLRASASLVALEPGRQIHS 432
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
K +N D V+N LID YAKCG I A F+ +++++ VSW ++I G+++HG+
Sbjct: 433 LTIKTMYNK-DSVVANSLIDMYAKCGRIDDARLTFD--KMDKQDEVSWNALICGYSIHGL 489
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G A+ F+ MQ+ KPN++TF+ VL+ACS+ GL HY
Sbjct: 490 GMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYT 549
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+V +LGR+G+ ++A K+ IP + + V+V R LLGAC H N+++G+ ++VLEME
Sbjct: 550 CMVWLLGRSGQFDEAVKLIGEIPFQPS-VMVWRALLGACVIHKNLDLGKVCAQRVLEMEP 608
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +VL+ N+ A R+ + +R+ M ++ K PG S V
Sbjct: 609 QDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWV 651
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 46/286 (16%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP ++FT S +++C L +G +H KV + +YV AL+ +Y G + ++
Sbjct: 202 RP--NNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEA 259
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+ F+E+P+ +L+ W++MI+ + + + A LF M +VV
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVV--------------- 304
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P+ T +VL A + IH K G ++ ++ VSN L+D YAKCG I
Sbjct: 305 -----PNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDS-NVFVSNALMDVYAKCGEI 358
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
+++KLF + KN V+W +II G+ G G+ A+ F M + ++P VT+ SVL
Sbjct: 359 ENSVKLFTGST--EKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLR 416
Query: 303 ACS---------------------HGGLHYGCLVDMLGRAGRLEQA 327
A + + L+DM + GR++ A
Sbjct: 417 ASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDA 462
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 45/292 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DS +Y+ +++ + PN G LH I K G ++ L+N YV GFL+D+SKLF
Sbjct: 2 DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+P N V++ + G ++RS + + +GY
Sbjct: 62 DEMPLTNTVSFVTLAQG--------FSRS--HQFQRARRLLLRLFREGY----------- 100
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
E ++ +L + C +H Y K G A D V LID Y+ CG + +A
Sbjct: 101 EVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQA-DAFVGTALIDAYSVCGNVDAAR 159
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++F+ I K++VSWT +++ +A + + ++ F +M+ +G +PN T + L +C+
Sbjct: 160 QVFDGIYF--KDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNG 217
Query: 307 ------GGLHYGC---------------LVDMLGRAGRLEQAEKIALGIPSE 337
G +GC L+++ ++G + +A++ +P +
Sbjct: 218 LEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKD 269
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 167/388 (43%), Gaps = 69/388 (17%)
Query: 6 NVTTRIHSHLLTTNS---LLHHTLLFNTLLHFYSLADS-------PKKAFLLYKQLQQIY 55
N +H H+L + L +L NT +HF L D+ P + + L Q +
Sbjct: 20 NAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGF 79
Query: 56 THSHSPLRPL------------FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103
+ SH R + F ++ L++ V++ + +HA + K+G Q+
Sbjct: 80 SRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADA 139
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163
+V TAL++ Y G + + ++FD + +++V+W M+ + E + LF +M
Sbjct: 140 FVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR-- 197
Query: 164 NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
+ GY P+ TI A L + A + + +HG K ++
Sbjct: 198 --------IMGY-----------RPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR 238
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D+ V L++ Y K G I A + FE++ + +L+ W+ +IS +A K A+E F
Sbjct: 239 -DLYVGIALLELYTKSGEIAEAQQFFEEMP--KDDLIPWSLMISRYAQSDKSKEALELFC 295
Query: 284 RM-QKVGLKPNRVTFLSVLNACSH------GGLHYGC---------------LVDMLGRA 321
RM Q + PN TF SVL AC+ G + C L+D+ +
Sbjct: 296 RMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKC 355
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLG 349
G +E + K+ G +E +V I++G
Sbjct: 356 GEIENSVKLFTG-STEKNEVAWNTIIVG 382
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 215/420 (51%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ YS + K L+K +Q + D T ++ C L ++
Sbjct: 156 WNSLICGYSQCNRFKDILALFKLMQNEGVKA--------DKVTMIKVVSACTRLGDYSMA 207
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ I + VY+ LV+ + G L+ + K+F + RN+VT N MI K
Sbjct: 208 DYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKG 267
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVL 197
++ AR +F+++P ++++SW+ ++ GY++ N + A +P I I +V+
Sbjct: 268 QDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVV 327
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
+ GA+ + +H Y + A D + N LID Y KCG AL++F+++ + K
Sbjct: 328 SSCAHLGALDLGKWVHEYVRRNNIKA-DTIMENSLIDMYMKCGSAKEALQVFKEM--KEK 384
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ +SW SII G A +G K ++ F+ M G +PN VTFL VL AC++ L
Sbjct: 385 DTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHF 444
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRAG+LE+A + +P + D VV RILLG+C+ HG
Sbjct: 445 ESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPID-PDPVVWRILLGSCNTHG 503
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+V + E VT+K+ E+E N G+Y L+ N A R+ +A +R+ M + + K PG S V
Sbjct: 504 DVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAV 563
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 153/300 (51%), Gaps = 24/300 (8%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N L+ + +D+P A YK+ Q + P D+ T+ F+++ C ++
Sbjct: 52 TFLWNILIRGLAQSDAPADAIAFYKKAQG------GGMVP--DNLTFPFILKACARINAL 103
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
N G Q+H I+K+G S ++V+ +L+++Y + G L + +FDE+ +++V+WN +I G
Sbjct: 104 NEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGY 163
Query: 145 VKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
+ + +LF+ M V V+ ++ TR+ + A I + +
Sbjct: 164 SQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDV 223
Query: 201 WQNGAV-----RNCQLIHGYGEKRGFN--AFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ + R QL EK FN +I N +I YAK I SA K+F+ I
Sbjct: 224 YLGNTLVDYFGRRGQL--QSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIP 281
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
+K+L+SW+S+ISG++ A+E F +MQ+ +KP+ + SV+++C+H G L G
Sbjct: 282 --KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 339
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 47/248 (18%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
K+FD++ WN++I GL + + P D ++ G
Sbjct: 42 KVFDQIEAPTTFLWNILIRGLAQ-----------SDAPA----------DAIAFYKKAQG 80
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P +T +L A + A+ + +H + K G + DI VSN LI YA CG +
Sbjct: 81 GGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS-DIFVSNSLIHLYAACGNLC 139
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A +F+++ V K++VSW S+I G++ K + F+ MQ G+K ++VT + V++A
Sbjct: 140 YARSVFDEMVV--KDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSA 197
Query: 304 CSHGG--------------------LHYG-CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
C+ G ++ G LVD GR G+L+ AEK+ + ++ ++V
Sbjct: 198 CTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM--KVRNIV 255
Query: 343 VRRILLGA 350
++ A
Sbjct: 256 TMNAMIAA 263
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 157/525 (29%), Positives = 235/525 (44%), Gaps = 124/525 (23%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLH-FYSLADSPKKAFLLYKQLQQ-----------IYTH 57
+IH+ L+TTN L+ T + LL S + A L++ Q+ Q YT
Sbjct: 29 QIHAQLITTN-LISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTE 87
Query: 58 SHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
S +P R L D++TY F+++ C + G + K GF V+V
Sbjct: 88 SSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFV 147
Query: 106 NTALVNMY-------------------------------VSLGFLKDSSKLFDELPERN- 133
L++MY V G ++++ +FDE+PER+
Sbjct: 148 VNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDV 207
Query: 134 -------------------------------LVTWNVMITGLVKWGELEYARSLFEEMPC 162
LV+WN MI G K GE+E AR +F++M
Sbjct: 208 VSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQ 267
Query: 163 RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLI 212
+NV+SW+ ++DGY S A +P ++++ + A Q GA+ + I
Sbjct: 268 KNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWI 327
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y KR DI V L+D Y KCG A +F S+ +N+VSW +I G M+
Sbjct: 328 HLY-MKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFN--SMPERNVVSWNVMIVGLGMN 384
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G GK A+E F +M+ + + + FL VL ACSH L H
Sbjct: 385 GFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEH 444
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
YGCLVD+LGRAG+L+Q + I +P + + +LL AC H NV + E V ++ E+
Sbjct: 445 YGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL-ACRIHQNVTLAEIVVERLAEL 503
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + G YVLM NI A VG + R+R++M ER K GRS++
Sbjct: 504 KADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVI 548
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 39/384 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++TY+F+++ C L G Q+H + K G +++T+L++MY L + +
Sbjct: 122 DNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVL 181
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
E + N++ N MI+G + G +E AR++F++M ++ +W+G++ GYT+
Sbjct: 182 AECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALV 241
Query: 178 ----MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
M + + +P+E +++ L A GA+ + IH Y + G I + L+
Sbjct: 242 MFREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAK-ISITLGTGLV 300
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D YAKCG I + KLF ++ +++++V+W ++SGFAMHG + + F+ M G +PN
Sbjct: 301 DMYAKCGSIHCSYKLFREM--QQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPN 358
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
V F+++L+ACSH G HYGC+VD+LGRAG+L +AE++
Sbjct: 359 EVIFVAILSACSHAGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELI 418
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+ +P E T V+ LL AC H ++ G R R+++++E G Y L + + G
Sbjct: 419 ISMPEEPT-AVIWGALLSACRIHKDLRRGRRAFRQLMQLEPLRGDRYKLAGQMFSSAGEK 477
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
+A+ + R + E G S +
Sbjct: 478 EEADNVTRFIKENELETTRGSSFI 501
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 112/322 (34%), Gaps = 77/322 (23%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+HA G + L++ YVS+ + + +F+ +P ++ +N MI GL G
Sbjct: 43 QIHAQFIVSGLLARPPNAGRLLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLT-LG 101
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
Y D N+ P T VL A+
Sbjct: 102 NCPY--------------------DSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFE 141
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER------------ 256
+ +H K G A D + LI YAK C+ A + + S E
Sbjct: 142 GKQVHCQVIKAGV-APDTHIHTSLIHMYAKSDCLACAEGVLAECSQENVLAINSMISGYM 200
Query: 257 -----------------KNLVSWTSIISGFAMHGMGKAAVENFERMQKV---GLKPNRVT 296
K+ +W+ +I+G+ +GM + A+ F M V G++PN
Sbjct: 201 SQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALVMFREMMMVSNSGVQPNESA 260
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+S L+A + G L G LVDM + G + + K+ +
Sbjct: 261 LVSSLSATACLGALDQGRWIHAYIRRIGAKISITLGTGLVDMYAKCGSIHCSYKLFREMQ 320
Query: 336 SEITDVVVRRILLGACSFHGNV 357
DVV +++ + HG
Sbjct: 321 QR--DVVTWGVMMSGFAMHGQA 340
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/497 (29%), Positives = 223/497 (44%), Gaps = 122/497 (24%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+++N ++ Y+ ++ ++ ++ Q L+P +FTY ++I +C L +
Sbjct: 20 VIWNAMIRGYAFNGPFQECIRMFDEMPQ------RGLKP--HNFTYPYVINSCCELEWYG 71
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMY-------------------------------- 113
G ++H I K GF+S V +L NMY
Sbjct: 72 RGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPV 131
Query: 114 ----------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG--------------- 148
V++G +K + +LFD +PER++V+WN MI G K G
Sbjct: 132 ELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEK 191
Query: 149 ----------------ELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------------ 180
+LE ARS FE MP RNVVSW ++ Y + +
Sbjct: 192 NVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQ 251
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
S G + P T ++VL A G + + IH + ++ V L + YA+CG
Sbjct: 252 SEGVT--PDGYTFVSVLSACSNLGDLEFGKYIHYLSGD--LSQSEVMVGTALTEMYAQCG 307
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ A +F I + ++++ W II A+HG + A++ F M+K GLKPN TF S
Sbjct: 308 DVDKAFAVF--IKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSA 365
Query: 301 LNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
L ACSHGGL HYGCL+DML R G+LE+A + +P +
Sbjct: 366 LFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQ- 424
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
DV + LLG C G++++ E+V K EME G YVL+ NI A G++++A R
Sbjct: 425 PDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEAADAR 484
Query: 399 RVMDERNALKFPGRSLV 415
+ MDE+ K G S+V
Sbjct: 485 KKMDEKKISKKTGSSVV 501
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 143/357 (40%), Gaps = 95/357 (26%)
Query: 81 LSYPNLGTQLHAVISKVGFQS--HVYVNTALVNMYVSLGFLKDSSKLFDELPERNL---- 134
+ Y NL + S++G S + + A++ Y G ++ ++FDE+P+R L
Sbjct: 1 MDYSNL------IFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHN 54
Query: 135 VTWNVMI----------------------------------------------TGLVKWG 148
T+ +I GL
Sbjct: 55 FTYPYVINSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNC 114
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQ 202
+L+YAR +F++M R V W ++ Y + A E ++ +++ +
Sbjct: 115 KLDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAK 174
Query: 203 NGAVRNCQ-LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
G V N + L EK ++ +I YA + +A FE ++ ++N+VS
Sbjct: 175 GGKVANARGLFEKMPEK------NVISWTSMIGAYADTDDLETARSFFE--TMPQRNVVS 226
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------- 312
W S+IS +A HG ++ F +MQ G+ P+ TF+SVL+ACS+ G L +G
Sbjct: 227 WNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSG 286
Query: 313 -----------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
L +M + G +++A + + I DV +++ A + HG E
Sbjct: 287 DLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKR--DVFCWNVIIKALALHGRSE 341
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 207/419 (49%), Gaps = 59/419 (14%)
Query: 23 HHT----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC 78
HH+ + +N L+ YSL A LL++Q+++ ++ T LI C
Sbjct: 118 HHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVS--------VNAVTMLGLIPVC 169
Query: 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
+ GT LHA + G + V L+ MYV G + + KLFD +PE+ L+TWN
Sbjct: 170 AGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWN 229
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP 198
MI+G + G + L+ +M +TGI+ P +T++ VL
Sbjct: 230 AMISGYAQNGLAGHVLDLYRKM------EFTGIV---------------PDPVTLVGVLS 268
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
+ GA + + E GF F+ + N LI+ YA+CG + A +F+ ++ KN
Sbjct: 269 SCAHLGAHAAGREVEQRIELSGF-GFNPFLKNALINMYARCGNLVKARAIFDGMT--EKN 325
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
++SWT+II+G+ MHG G+ AV+ F+ M P+ F+SVL+ACSH GL
Sbjct: 326 VISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFT 385
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HY C+VD+LGRAGRLE+A K+ +G S D V LLGAC H N
Sbjct: 386 AMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKL-IGSMSVEPDGAVWGALLGACKIHRN 444
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VE+ E KV+E E N G YVL+ NI + G R+R +M ER K PG S V
Sbjct: 445 VELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYV 503
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 146/316 (46%), Gaps = 49/316 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
++FT+ F ++C +LS P G+QLH + K G + +V T+L++MY + + K+F
Sbjct: 55 NAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVF 114
Query: 127 DE-LPERNL-VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
DE RNL V +N +I G A LF +M R G
Sbjct: 115 DENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQM-------------------RKEGV 155
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
S + +T+L ++P + +H + G + D+ V NCL+ Y +CG +
Sbjct: 156 SV--NAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDG-DLSVGNCLLTMYVRCGSVDF 212
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A KLF+ + K L++W ++ISG+A +G+ ++ + +M+ G+ P+ VT + VL++C
Sbjct: 213 ARKLFDGMP--EKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSC 270
Query: 305 SHGGLHYG---------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+H G H L++M R G L +A I G+ + +V+
Sbjct: 271 AHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEK--NVIS 328
Query: 344 RRILLGACSFHGNVEM 359
++ HG E+
Sbjct: 329 WTAIIAGYGMHGQGEL 344
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 211/420 (50%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ YS +A LL++++ Q+ + D FT L+ +LG
Sbjct: 206 WNSMIAGYSKMGFCDEAILLFQEMLQLGVEA--------DVFTLVSLLSASSKHCNLDLG 257
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I G + V AL++MY G L+ + +FD++ ++++V+W M+
Sbjct: 258 RFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQ 317
Query: 148 GELEYARSLFEEMPCRNVVSWTGIL----------DGYTRMNRSNGASTEPSEITILAVL 197
G +E A +F MP +NVVSW I+ + +R + P + T++++L
Sbjct: 318 GLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSIL 377
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
G + + H Y + + N LID YAKCG + +A+ +F + K
Sbjct: 378 SCCSNTGDLALGKQAHCYICDNIITV-SVTLCNSLIDMYAKCGALQTAIDIF--FGMPEK 434
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N+VSW II A+HG G+ A+E F+ MQ GL P+ +TF +L+ACSH GL
Sbjct: 435 NVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYF 494
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+LGR G L +A + +P + DVVV LLGAC +G
Sbjct: 495 DIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVK-PDVVVWGALLGACRIYG 553
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+E+ +++ +++LE+ R N G YVL+ N+ + R+ D +++R++MD+ K S +
Sbjct: 554 NLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFI 613
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 177/412 (42%), Gaps = 89/412 (21%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
++HLL + ++N L+ YS ++ P K+ LL++Q+ P+ + FT+
Sbjct: 89 YAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQM--------VSAGPMPNQFTF 140
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
F+++ C + +HA K+G H V A++ YV+ + + ++FD++ +
Sbjct: 141 PFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISD 200
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
R +V+WN MI G K G + A LF+EM V E
Sbjct: 201 RTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGV---------------------EADVF 239
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC------------ 239
T++++L A ++ + + +H Y G D V+N LID YAKC
Sbjct: 240 TLVSLLSASSKHCNLDLGRFVHLYIVITGVE-IDSIVTNALIDMYAKCGHLQFAKHVFDQ 298
Query: 240 -------------------GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
G + +A+++F + V KN+VSW SII G AVE
Sbjct: 299 MLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPV--KNVVSWNSIICCLVQEGQYTEAVE 356
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGG-------LH-YGC-------------LVDMLG 319
F RM G+ P+ T +S+L+ CS+ G H Y C L+DM
Sbjct: 357 LFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYA 416
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
+ G L+ A I G+P + +VV +++GA + HG GE M+
Sbjct: 417 KCGALQTAIDIFFGMPEK--NVVSWNVIIGALALHG---FGEEAIEMFKSMQ 463
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 34/229 (14%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSN 182
+VT +++ V+ G+L YA LF+++P N + ++ GY+ N +
Sbjct: 70 QVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMV 129
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
A P++ T VL A ++H K G V N ++ Y C I
Sbjct: 130 SAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHAC-VQNAILTAYVACRLI 188
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
SA ++F+DIS + +VSW S+I+G++ G A+ F+ M ++G++ + T +S+L+
Sbjct: 189 LSARQVFDDIS--DRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLS 246
Query: 303 ACS-HGGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
A S H L G L+DM + G L+ A+ +
Sbjct: 247 ASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHV 295
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 207/425 (48%), Gaps = 58/425 (13%)
Query: 13 SHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
H LT S L T N++L S P A ++++ + ++FT +
Sbjct: 78 DHHLTAASSLPSTFQCNSILRVLS---DPSDALRFLRRMRALGRRG--------NAFTLA 126
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L++ L++ QLHA + G + T+L+ Y + G + KLF E+P R
Sbjct: 127 ILLKPRCALAH---ARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPAR 183
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
+ V WNV+I+ + + A LFEEM R + EP ++T
Sbjct: 184 DAVAWNVLISCCARNRRTKDALKLFEEM-------------------RGRDSGAEPDDVT 224
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+ +L A GA+ + + Y E+ G+ A ++V N LI Y++CGC+ A ++F
Sbjct: 225 CILLLQACTSLGALDFGEQVWAYAEEHGYGA-KLKVRNSLIAMYSRCGCVDKAYRVF--C 281
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+K++V+W+++ISG A +G G A+ FE M + + P+ TF VL+ACSH GL
Sbjct: 282 GTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDE 341
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC+VD++GRAG L++A ++ D + R LLGA
Sbjct: 342 GFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGA 401
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C HG+V++GERV ++E++ GDYVL+ N A VG + +R++M E+ P
Sbjct: 402 CRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQTTP 461
Query: 411 GRSLV 415
G + V
Sbjct: 462 GCTTV 466
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 221/406 (54%), Gaps = 44/406 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ +L Y + K+A LL+ +++ +S + P D + ++ C + + +G
Sbjct: 219 WGVMLDSYCQTRNYKEALLLFAKMK------NSGVVP--DQLILATVLPACGHIRHLRIG 270
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+ + ++++AL+++Y S ++ + KL++E+P ++LV+ M++G +
Sbjct: 271 KAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARN 330
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
++E ARS+F+ MP ++VVSW+ ++ GY N+ N A EIT+L+V+
Sbjct: 331 RKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVI 390
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A G++ + IH + + G N + + N LID +AKCG I AL +F ++ + K
Sbjct: 391 SACANLGSLDKAKWIHAFIKNSGLNKV-LHICNALIDMFAKCGGINLALNVFNEMPL--K 447
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N+++WTS+IS FAMHG GK+++ FE+M+ G +PN VTFLS+L AC H GL
Sbjct: 448 NVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLF 507
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRA +++A + + E +V + LL AC HG
Sbjct: 508 SSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLE-PNVPIWGSLLAACWMHG 566
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
++++G +K+L+++ + G VL+ I +A+ +R VM
Sbjct: 567 DLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVM 612
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 129/316 (40%), Gaps = 74/316 (23%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
HA+ + G +V TAL Y + G ++D+ K+FD + R++V+W VM+ +
Sbjct: 173 HALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNY 232
Query: 151 EYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
+ A LF +M VV P ++ + VLPA +R +
Sbjct: 233 KEALLLFAKMKNSGVV---------------------PDQLILATVLPACGHIRHLRIGK 271
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI------------------ 252
IH Y +S+ LI YA C + A KL+ ++
Sbjct: 272 AIHSYMLVSDM-IIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARN 330
Query: 253 -----------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ K++VSW+++ISG+ A+ F MQ+ G++ + +T LSV+
Sbjct: 331 RKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVI 390
Query: 302 NACSHGG--------------------LHY-GCLVDMLGRAGRLEQAEKIALGIPSEITD 340
+AC++ G LH L+DM + G + A + +P + +
Sbjct: 391 SACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMP--LKN 448
Query: 341 VVVRRILLGACSFHGN 356
V+ ++ A + HG+
Sbjct: 449 VITWTSMISAFAMHGD 464
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 39/342 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++++ YV G ++D+ LFD +P R++VTW MI G K G + +A++LF++MP R+VV+
Sbjct: 257 SMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVA 316
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + N+ + + E P + T++ VLPAI Q G + +H Y
Sbjct: 317 YNSMMAGYVQ-NKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 375
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
++ F ++ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G
Sbjct: 376 IVEKQF-YLGGKLGVALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLG 432
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A + +++++ LKP+ +TF+ VLNACSH GL HYGC
Sbjct: 433 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 492
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+L R+G +E A+ + +P E D V+ R L ACS H E GE V + ++
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGY 551
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G + D R+R +M ER K PG S +
Sbjct: 552 NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 161/337 (47%), Gaps = 43/337 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F+ S +++ C L + G Q+H + K G S +++ L+ +Y+ G L S ++F
Sbjct: 120 DKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMF 179
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGA 184
D +P+R+ V++N MI G VK G + AR LF+ MP +N++SW ++ GY + +
Sbjct: 180 DRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDI 239
Query: 185 ST-------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
++ E I+ +++ ++G + + + + +R D+ +ID YA
Sbjct: 240 ASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMIDGYA 294
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVT 296
K G + A LF+ + +++V++ S+++G+ + A+E F M+K L P+ T
Sbjct: 295 KLGFVHHAKTLFDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTT 352
Query: 297 FLSVLNACSH---------------------GGLHYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL A + GG L+DM + G ++ A + GI
Sbjct: 353 LVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIE 412
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
++ D ++G + HG +GE +L++ER
Sbjct: 413 NKSID--HWNAMIGGLAIHG---LGESAFDMLLQIER 444
>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 587
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 193/375 (51%), Gaps = 50/375 (13%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P D+ + SF ++ S + QLHA++ ++G + V + T L++ Y G L +
Sbjct: 107 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 166
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSL-------FEEMPCRNVVSWTGILDGYT 176
K+FDE+ R++ TWN ++ GL + E A +L F+E+P R
Sbjct: 167 KVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSRE------------ 214
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP+E+TI+A L A Q G +++ +H + ++ G + ++RV N LID Y
Sbjct: 215 ----------EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMY 263
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+KCG + AL +F I E + LVS+ + I +MHG G A+ F+ M ++P+ VT
Sbjct: 264 SKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVT 322
Query: 297 FLSVLNACSHGGL------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+L+VL C+H GL HYG +VD+LGRAGRL +A + +P
Sbjct: 323 YLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP- 381
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D+V+ + LLGA HG VE+ E K+ E+ GDYVL+ N+ A R++D R+R
Sbjct: 382 ADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVR 441
Query: 399 RVMDERNALKFPGRS 413
M + K PG S
Sbjct: 442 DTMRSNDVRKVPGFS 456
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 202/383 (52%), Gaps = 36/383 (9%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
R + D + ++ TC + G +H+ I +++AL+NMY S ++ +
Sbjct: 89 RVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMA 148
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----- 177
K++ + ++LV+ M+ G K G++E ARS+F M ++VVSW+ ++ Y
Sbjct: 149 DKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPS 208
Query: 178 -----MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
N+ G P EIT+L+V+ A G++ + IH GF + + N L
Sbjct: 209 EVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKI-LSICNAL 267
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID ++KCG + AL +F ++ RKN+++WTS+I+ FAMHG G +A+ F +M+ G++P
Sbjct: 268 IDMFSKCGSLTLALNMFN--AMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEP 325
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
N VTFL +L AC H GL HYGC+VD++GRA +++A +
Sbjct: 326 NGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDL 385
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+ +V + LL AC HG++E+GE +K+LE++ + G YVL+ NI A G
Sbjct: 386 IESMHIR-PNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKSGN 444
Query: 391 YVDAERLRRVMDERNALKFPGRS 413
+ +A++LR +M K G S
Sbjct: 445 WNNAQKLRVMMKVHGVSKETGYS 467
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 34/296 (11%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
H + +VG +V TALV Y + + ++ ++FD +PER+LV W VM+
Sbjct: 16 HGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNY 75
Query: 151 EYARSLFEEMPCRNVVSWTGILD------GYTRMNRSNG---ASTEPSEITILAVLPAIW 201
L +M VV IL G+TR RS + + S+I + A L +
Sbjct: 76 RETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSAL 135
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
N + G D+ S ++ YAK G I A +F ++ K++VS
Sbjct: 136 INMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMA--EKDVVS 193
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LHY--- 311
W+++IS +A + + F +MQ G+ P+ +T LSV++AC++ G +H
Sbjct: 194 WSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVG 253
Query: 312 -----------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G L A + +P + +V+ ++ A + HG+
Sbjct: 254 NHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRK--NVITWTSMIAAFAMHGD 307
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 204/383 (53%), Gaps = 40/383 (10%)
Query: 69 FTYSFLIRTCVTLSYPN--LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKL 125
T+ L+ C S + LG LH K+G ++HV V TA++ MY +K + +
Sbjct: 61 ITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLV 120
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD + ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +++G+ + A
Sbjct: 121 FDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEAL 180
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+P + I+A L A GA+ +H Y + F +++VSN LID
Sbjct: 181 AWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKN-NVKVSNSLIDL 239
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y +CGC+ A ++F+ +E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ V
Sbjct: 240 YCRCGCVEFAREVFD--KMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAV 297
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF L ACSH GL HYGCLVD+ RAGRLE+A K+
Sbjct: 298 TFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQS 357
Query: 334 IPSEITDVVVRRILLGACSFHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + +VV+ LL AC HG N + ER+ + + ++ +YV++ N+ A G++
Sbjct: 358 MPMKPNEVVIGS-LLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVILSNMYAADGKWE 416
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
A ++RR M K PG S +
Sbjct: 417 GASQMRRKMKGLGLKKQPGFSSI 439
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 46/195 (23%)
Query: 165 VVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVLPAI--WQNGAVRNCQLI 212
+VSWT + TR R A+ EP+ IT +A+L + +G+ L+
Sbjct: 25 IVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLL 84
Query: 213 HGYGEKRGFNAFDIRVS-------------------------------NCLIDTYAKCGC 241
HGY K G + + V N +ID Y + G
Sbjct: 85 HGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQ 144
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ +A+K+F+ + ++L+SWT++I+GF G + A+ F MQ G+KP+ V ++ L
Sbjct: 145 VDNAVKMFDKMP--ERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 202
Query: 302 NACSH-GGLHYGCLV 315
NAC++ G L +G V
Sbjct: 203 NACTNLGALSFGLWV 217
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD 316
+ +VSWTS I+ +G A + F M+ G++PN +TF+++L+ C L D
Sbjct: 23 ETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGD 82
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE-MERGNG 375
+L A + + T V+V +LG S H V + R V + ME N
Sbjct: 83 LL---------HGYACKLGHDRTHVMVGTAILGMYSKHSRV----KKARLVFDYMEDKNS 129
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+ M + G+ +A ++ M ER+ + +
Sbjct: 130 VTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISW 163
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 39/342 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++++ YV G ++D+ LFD +P R++VTW MI G K G + +A++LF++MP R+VV+
Sbjct: 250 SMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVA 309
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + N+ + + E P + T++ VLPAI Q G + +H Y
Sbjct: 310 YNSMMAGYVQ-NKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 368
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
++ F ++ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G
Sbjct: 369 IVEKQF-YLGGKLGVALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLG 425
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A + +++++ LKP+ +TF+ VLNACSH GL HYGC
Sbjct: 426 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 485
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+L R+G +E A+ + +P E D V+ R L ACS H E GE V + ++
Sbjct: 486 MVDILSRSGSIELAKNLIEEMPVEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGY 544
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G + D R+R +M ER K PG S +
Sbjct: 545 NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 586
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 161/337 (47%), Gaps = 43/337 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F+ S +++ C L + G Q+H + K G S +++ L+ +Y+ G L S ++F
Sbjct: 113 DKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMF 172
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGA 184
D +P+R+ V++N MI G VK G + AR LF+ MP +N++SW ++ GY + +
Sbjct: 173 DRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDI 232
Query: 185 ST-------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
++ E I+ +++ ++G + + + + +R D+ +ID YA
Sbjct: 233 ASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMIDGYA 287
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVT 296
K G + A LF+ + +++V++ S+++G+ + A+E F M+K L P+ T
Sbjct: 288 KLGFVHHAKTLFDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTT 345
Query: 297 FLSVLNACSH---------------------GGLHYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL A + GG L+DM + G ++ A + GI
Sbjct: 346 LVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIE 405
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
++ D ++G + HG +GE +L++ER
Sbjct: 406 NKSID--HWNAMIGGLAIHG---LGESAFDMLLQIER 437
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 211/431 (48%), Gaps = 57/431 (13%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-PKKAFLLYKQLQQIYTHSHSPLRPLF 66
T+I + N ++++ ++ L ++AD +A L+ ++Q ++P
Sbjct: 277 ATKIFKLMPDPNVVMYNAMIAG-FLQMETMADEFANEAMYLFFEMQS------RGMKP-- 327
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
FT+S +++ C T+ G Q+HA I K QS ++ ALV +Y G ++D K F
Sbjct: 328 SEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCF 387
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
P+ ++V+W +I G V+ G+ E +LF E+ + G
Sbjct: 388 HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL----------LFSG-----------R 426
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P E TI +L A AV++ + IH Y K G F I + N I YAKCG I SA
Sbjct: 427 KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSAN 485
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
F++ + ++VSW+ +IS A HG K AV+ FE M+ G+ PN +TFL VL ACSH
Sbjct: 486 MTFKE--TKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSH 543
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GGL H C+VD+LGRAGRL +AE + E D V+
Sbjct: 544 GGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFE-GDPVMW 602
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
R LL AC H + G+RV +V+E+E YVL+YNI G + A +R +M +R
Sbjct: 603 RSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDR 662
Query: 405 NALKFPGRSLV 415
K PG S +
Sbjct: 663 GVKKEPGLSWI 673
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G LH K+G V V TAL++ Y +G L+D++K+F +P+ N+V +N MI G ++
Sbjct: 242 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 301
Query: 147 WGEL--EYARS---LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+ E+A LF EM R + +PSE T ++L A
Sbjct: 302 METMADEFANEAMYLFFEMQSRGM---------------------KPSEFTFSSILKACS 340
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A + IH K + D + N L++ Y+ G I LK F S + ++VS
Sbjct: 341 TIEAFECGKQIHAQIFKYNLQS-DEFIGNALVELYSLSGSIEDGLKCFH--STPKLDVVS 397
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
WTS+I G +G + + F + G KP+ T +L+AC++
Sbjct: 398 WTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 442
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 128/309 (41%), Gaps = 53/309 (17%)
Query: 56 THSHSPLRPLF-----DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110
T H+P +P + DS TY+ L++ G H + K F+ +++ L+
Sbjct: 3 TPPHNP-QPYYLGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLL 61
Query: 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
MY G + KLFD +P+RN+V+WN +I+G + G +LF+E ++
Sbjct: 62 YMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLR---- 117
Query: 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
LD +T N L + +R +LIH G + ++N
Sbjct: 118 -LDKFTFSN----------------ALSVCGRTLDLRLGRLIHALITVSGLGG-PVLLTN 159
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LID Y KCG I A +FE S + + VSW S+I+G+ G + +M + GL
Sbjct: 160 SLIDMYCKCGRIDWARLVFE--SADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL 217
Query: 291 KPNRVTFLSVLNACSH--------GGLHYGC---------------LVDMLGRAGRLEQA 327
N S L AC G + +GC L+D + G LE A
Sbjct: 218 NLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDA 277
Query: 328 EKIALGIPS 336
KI +P
Sbjct: 278 TKIFKLMPD 286
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 141/463 (30%), Positives = 234/463 (50%), Gaps = 75/463 (16%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFL--LYKQLQQI------ 54
+S + T + H+ LL T+ LLH+ L + L+ F +L+ S + L+ Q+Q
Sbjct: 22 TSISKTKQAHALLLRTH-LLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICN 80
Query: 55 -----YTHSHSPLRPL------------FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97
Y S +P + D++TY F++ C L LG + H + K
Sbjct: 81 TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
GF S ++V AL+ Y + G + +FDE R++VTWN+MI + G E A L
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG- 216
+EM T+++ + P E+T+++++PA Q G + + +H Y
Sbjct: 201 DEM---------------TKLD-----NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240
Query: 217 --EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+K N D+ + L+D YAKCG I AL++F + V +N+ +W ++I G AMHG
Sbjct: 241 ELDKFEINC-DLVLETALVDMYAKCGSIDLALQVFRRMRV--RNVFTWNALIGGLAMHGH 297
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G+ A+ F++M+ L P+ VTF+++L ACSH GL HYG
Sbjct: 298 GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYG 357
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+VD+L RA +++ A +P + + V+ LLGAC G+ ++ E++ R+V+E+E
Sbjct: 358 CVVDLLCRARKVDDALAFIENMPIK-ANSVLWATLLGACRSGGHFDLAEKIGRRVIELEP 416
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ G YV++ N+ AGV ++ A +LR+ M + K PG S +
Sbjct: 417 DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWI 459
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 202/374 (54%), Gaps = 37/374 (9%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER-N 133
+ C + +G +H + KVG + +V + AL+++Y S G + D+ ++FD+ E +
Sbjct: 277 LSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLD 336
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
L++WN MI+G ++ G ++ A LF MP ++VVSW+ ++ GY + + A
Sbjct: 337 LISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQL 396
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P E +++ + A + + IH Y + ++ +S LID Y KCGC+
Sbjct: 397 HGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQV-NVILSTTLIDMYMKCGCVE 455
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
+AL++F ++E K + +W ++I G AM+G + ++ F M+K G PN +TF+ VL A
Sbjct: 456 NALEVF--YAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGA 513
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C H GL HYGC+VD+LGRAG L++AE++ +P DV
Sbjct: 514 CRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMA-PDV 572
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
LLGAC H + EMGER+ RK+++++ + G +VL+ NI A G + + +R +M
Sbjct: 573 ATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIM 632
Query: 402 DERNALKFPGRSLV 415
+ +K PG S++
Sbjct: 633 AQHGVVKTPGCSMI 646
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 166/374 (44%), Gaps = 90/374 (24%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLL--HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
+ RI +HL N T +NT++ H Y L +SP +A L YK ++ SH+ +P
Sbjct: 57 SLRIFNHLRNPN-----TFTWNTIMRAHLY-LQNSPHQALLHYK----LFLASHA--KP- 103
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
DS+TY L++ C G QLHA GF VYV L+N+Y G + + ++
Sbjct: 104 -DSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRV 162
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN--------------------- 164
F+E P +LV+WN ++ G V+ GE+E A +FE MP RN
Sbjct: 163 FEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKAR 222
Query: 165 ------------VVSWTGILDGYTRMN----------RSNGASTEPSEITILAVLPAIWQ 202
+VSW+ ++ Y + G+ E+ +++ L A +
Sbjct: 223 RIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSR 282
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED----------- 251
V + +HG K G + + + N LI Y+ CG I A ++F+D
Sbjct: 283 VLNVEMGRWVHGLAVKVGVEDY-VSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWN 341
Query: 252 -------------------ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
S+ K++VSW+++ISG+A H A+ F+ MQ G++P
Sbjct: 342 SMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRP 401
Query: 293 NRVTFLSVLNACSH 306
+ +S ++AC+H
Sbjct: 402 DETALVSAISACTH 415
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 115/250 (46%), Gaps = 40/250 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
++ ++ Y+ + +A L++++Q +RP D I C L+ +LG
Sbjct: 371 WSAMISGYAQHECFSEALALFQEMQL------HGVRP--DETALVSAISACTHLATLDLG 422
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+HA IS+ Q +V ++T L++MY+ G ++++ ++F + E+ + TWN +I GL
Sbjct: 423 KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMN 482
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G +E + ++F +M T P+EIT + VL A G V
Sbjct: 483 GSVEQSLNMFADM---------------------KKTGTVPNEITFMGVLGACRHMGLVN 521
Query: 208 NCQ-----LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
+ + +IH + + +I+ C++D + G + A +L + + + ++ +W
Sbjct: 522 DGRHYFNSMIHEHKIEA-----NIKHYGCMVDLLGRAGLLKEAEELIDSMPMA-PDVATW 575
Query: 263 TSIISGFAMH 272
+++ H
Sbjct: 576 GALLGACRKH 585
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 63/294 (21%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
L T +A + F SH +T LV + SL ++F+ L N TWN ++
Sbjct: 31 LITDPYAASRLINFSSH---STTLVPFHYSL-------RIFNHLRNPNTFTWNTIMR--- 77
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
A + P + ++ + L + + P T P + Q A
Sbjct: 78 -------AHLYLQNSPHQALLHYKLFLASHAK----------PDSYT----YPILLQCCA 116
Query: 206 VRNCQL----IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
R + +H + GF+ D+ V N L++ YA CG + SA ++FE+ V +LVS
Sbjct: 117 ARVSEFEGRQLHAHAVSSGFDG-DVYVRNTLMNLYAVCGSVGSARRVFEESPV--LDLVS 173
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA 321
W ++++G+ G + A FE M P R T S ++ + GR
Sbjct: 174 WNTLLAGYVQAGEVEEAERVFEGM------PERNTIAS------------NSMIALFGRK 215
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
G +E+A +I G+ D+V ++ S + EMGE +EM +G+G
Sbjct: 216 GCVEKARRIFNGVRGRERDMVSWSAMV---SCYEQNEMGEEALVLFVEM-KGSG 265
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 216/423 (51%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + K+A L+K + + + +RP D T ++ C LG
Sbjct: 191 WNAMISGYAETGNYKEALELFKDMMK------TNVRP--DESTMVTVVSACAQSGSIELG 242
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I GF S++ + AL+++Y K
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYS-------------------------------KC 271
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GELE A LFE +P ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 272 GELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 331
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y +KR NA +R S LID YAKCG I +A ++F S+
Sbjct: 332 PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTS--LIDMYAKCGDIEAAHQVFN--SI 387
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L SW ++I GFAMHG A+ + F RM+K G++P+ +TF+ +L+ACSH G+
Sbjct: 388 LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 447
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G ++AE++ + E D V+ LL AC
Sbjct: 448 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIWCSLLKACK 506
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNVE+GE + ++++E N G YVL+ NI A GR+ + R +++++ K PG
Sbjct: 507 MHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGC 566
Query: 413 SLV 415
S +
Sbjct: 567 SSI 569
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/449 (27%), Positives = 212/449 (47%), Gaps = 87/449 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + L L +S+T+ FL+++C
Sbjct: 57 LIWNTMFRGHALSSDPVSALKLYVCMIS--------LGLLPNSYTFPFLLKSCAKSKAFK 108
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G +YV+T+L++MYV G L+D+ K+FDE P R++V++ +I G
Sbjct: 109 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYA 168
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G +E A+ +F+E+P ++VVSW ++ GY A + P E T++
Sbjct: 169 SRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 228
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q+G++ + +H + + GF + ++++ N LID Y+KCG + +A LFE +
Sbjct: 229 VVSACAQSGSIELGRQVHSWIDDHGFGS-NLKIVNALIDLYSKCGELETACGLFEGLPY- 286
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G + G
Sbjct: 287 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 345
Query: 313 --------------------CLVDMLGRAGRLEQAEKIALGI------------------ 334
L+DM + G +E A ++ I
Sbjct: 346 IHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 405
Query: 335 -------------------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
P +IT V LL ACS G +++G + R + + +
Sbjct: 406 GRADASFDIFSRMRKNGIEPDDITFVG----LLSACSHSGMLDLGRHIFRSMTQDYKMTP 461
Query: 376 G--DYVLMYNILAGVGRYVDAERLRRVMD 402
Y M ++L G + +AE + M+
Sbjct: 462 KLEHYGCMIDLLGHSGLFKEAEEMINTME 490
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A+ +FE +++ NL+ W ++ G A+ +A++ + M +GL PN TF +L +C
Sbjct: 44 AISVFE--TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSC 101
Query: 305 S-----------HGG-LHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+ HG L GC L+ M + GRLE A K+ P DVV
Sbjct: 102 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHR--DVVS 159
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ + G +E +++ E+ + + M + A G Y +A L + M +
Sbjct: 160 YTALIKGYASRGYIENAQKMFD---EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 216
Query: 404 RN 405
N
Sbjct: 217 TN 218
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 210/410 (51%), Gaps = 55/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL Y+ P+KA LY Q+ + S L P D FT L+ C + + G
Sbjct: 376 WNALLCGYAQNSDPRKALDLYLQM------TDSGLDP--DWFTIGSLLLACSRMKSLHYG 427
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + G ++ +L+++Y+ G + LFD + R+LV+WNVMI G +
Sbjct: 428 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQN 487
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A +LF +M + DG +P EI I+ V A Q A+R
Sbjct: 488 GLPDEAINLFRQM----------LSDG-----------IQPYEIAIMCVCGACSQLSALR 526
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + K DI VS+ +ID YAK GCI + ++F+ + K++ SW II+
Sbjct: 527 LGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQRIFD--RLREKDVASWNVIIA 583
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+ +HG GK A+E FE+M ++GLKP+ TF +L ACSH GL
Sbjct: 584 GYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIE 643
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY C+VDMLGRAGR++ A ++ +P + D + LL +C HGN+ +GE+V
Sbjct: 644 PKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD-PDSRIWSSLLSSCRIHGNLGLGEKVAN 702
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K+LE+E +YVL+ N+ AG G++ D R+R M + K G S +
Sbjct: 703 KLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWI 752
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 54/327 (16%)
Query: 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ-------------- 52
V R+H + + + +L ++ YS+ SP + +++ +L+
Sbjct: 16 VGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 75
Query: 53 ---QIYTHSHSPLRPLF-------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+++ + S L D+FT +I+ C L LG +H + +K+ S
Sbjct: 76 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 135
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+V AL+ MY G ++++ K+F+ +PERNLV+WN +I G + G L+ + + F EM
Sbjct: 136 VFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREM-- 193
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
L G S P T++ VLP + +HG K G N
Sbjct: 194 ---------LVGEE--------SFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLN 236
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
++ V+N LID Y+KC + A LF+ ++KN+VSW S+I G+A + F
Sbjct: 237 E-ELMVNNSLIDMYSKCRFLSEAQLLFD--KNDKKNIVSWNSMIGGYARE---EDVCRTF 290
Query: 283 ERMQKV-----GLKPNRVTFLSVLNAC 304
+QK+ +K + T L+VL C
Sbjct: 291 YLLQKMQTEDAKMKADEFTILNVLPVC 317
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 26/235 (11%)
Query: 74 LIRTCVTLSYPNLGTQLHAVIS-KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L++ C +G +LH ++S F + +NT ++ MY G DS +FD+L +
Sbjct: 4 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
NL WN +++ + E A S+F E+ +S T +P T
Sbjct: 64 NLFQWNAIVSAYTRNELFEDAMSIFSEL-----ISVT---------------EHKPDNFT 103
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+ V+ A + Q+IHG K + D+ V N LI Y KCG + A+K+FE +
Sbjct: 104 LPCVIKACAGLLDLGLGQIIHGMATKMDLVS-DVFVGNALIAMYGKCGLVEEAVKVFEHM 162
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACS 305
+NLVSW SII GF+ +G + + F M + P+ T ++VL C+
Sbjct: 163 P--ERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCA 215
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 30/279 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ Y+ + + F L +++Q + D FT ++ C+ S
Sbjct: 273 WNSMIGGYAREEDVCRTFYLLQKMQT------EDAKMKADEFTILNVLPVCLERSELQSL 326
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH + G QS+ V A + Y G L S ++FD + + + +WN ++ G +
Sbjct: 327 KELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQN 386
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ A LD Y +M S +P TI ++L A + ++
Sbjct: 387 SDPRKA------------------LDLYLQMTDS---GLDPDWFTIGSLLLACSRMKSLH 425
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IHG+ + G A D + L+ Y CG F+A LF+ +E ++LVSW +I+
Sbjct: 426 YGEEIHGFALRNGL-AVDPFIGISLLSLYICCGKPFAAQVLFD--GMEHRSLVSWNVMIA 482
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
G++ +G+ A+ F +M G++P + + V ACS
Sbjct: 483 GYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 521
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 117/258 (45%), Gaps = 35/258 (13%)
Query: 19 NSLLHHTLL-FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
+ + H +L+ +N ++ YS P +A L++Q+ ++P +
Sbjct: 467 DGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS------DGIQPY--EIAIMCVCGA 518
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C LS LG +LH K ++V++++++MY G + S ++FD L E+++ +W
Sbjct: 519 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 578
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
NV+I G G + A LFE+M R+ +P + T +L
Sbjct: 579 NVIIAGYGIHGRGKEALELFEKM---------------LRL------GLKPDDFTFTGIL 617
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKCGCIFSALKLFEDISVE 255
A G V + + + + + + ++ + C++D + G I AL+L E++ +
Sbjct: 618 MACSHAGLVEDG--LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD 675
Query: 256 RKNLVSWTSIISGFAMHG 273
+ + W+S++S +HG
Sbjct: 676 PDSRI-WSSLLSSCRIHG 692
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 186/338 (55%), Gaps = 36/338 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+V +YVS G L + ++FDE+P R+ +W+V+I G K G ++ AR LF++MP +N+V+
Sbjct: 185 AMVVLYVSAGDLVSARRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVA 244
Query: 168 WTGILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
T +++GY + + A EP T++ V+ A+ Q G+ + Y +
Sbjct: 245 RTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVD 304
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
++ +++V L+D +AKCG I AL F +I + + +T++ISG A HG K
Sbjct: 305 RKKIER-NVKVLTALVDMHAKCGNIEQALSAFREIP--QPDAYPYTALISGLATHGHEKL 361
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A+ FERMQ +KP+ +TF+ VL ACSH GL HY C++
Sbjct: 362 ALSVFERMQVQAVKPDPITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVI 421
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
DMLGRAGR+E+A ++ +P + LL AC + NVE+ E V K+ E+E N
Sbjct: 422 DMLGRAGRIEEAFEMVQTMPMGPHPGAL-GALLSACKTYENVEIAEIVANKLFELEPWNT 480
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
G+Y+L+ NI AG + +AER+R +M + K PG +
Sbjct: 481 GNYILLSNIYAGKELWEEAERVRSLMRTKLPFKNPGST 518
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 43/244 (17%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
+ + +L+ T + N Y+ PK A L++ L+ + + P D T +I
Sbjct: 237 MPSKNLVARTAMING----YAQTGQPKAALALFRDLEA------AGIEP--DGATMVGVI 284
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+ L + A + + + +V V TALV+M+ G ++ + F E+P+ +
Sbjct: 285 SAVSQIGSTELAGWVGAYVDRKKIERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAY 344
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
+ +I+GL G + A S+FE M + V +P IT +
Sbjct: 345 PYTALISGLATHGHEKLALSVFERMQVQAV---------------------KPDPITFVG 383
Query: 196 VLPAIWQNGAVRNC-----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
VL A G V ++ YG R + + C+ID + G I A ++ +
Sbjct: 384 VLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHY-----ACVIDMLGRAGRIEEAFEMVQ 438
Query: 251 DISV 254
+ +
Sbjct: 439 TMPM 442
>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
Length = 580
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 193/375 (51%), Gaps = 50/375 (13%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P D+ + SF ++ S + QLHA++ ++G + V + T L++ Y G L +
Sbjct: 100 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 159
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSL-------FEEMPCRNVVSWTGILDGYT 176
K+FDE+ R++ TWN ++ GL + E A +L F+E+P R
Sbjct: 160 KVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSRE------------ 207
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP+E+TI+A L A Q G +++ +H + ++ G + ++RV N LID Y
Sbjct: 208 ----------EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMY 256
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+KCG + AL +F I E + LVS+ + I +MHG G A+ F+ M ++P+ VT
Sbjct: 257 SKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVT 315
Query: 297 FLSVLNACSHGGL------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+L+VL C+H GL HYG +VD+LGRAGRL +A + +P
Sbjct: 316 YLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP- 374
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D+V+ + LLGA HG VE+ E K+ E+ GDYVL+ N+ A R++D R+R
Sbjct: 375 ADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVR 434
Query: 399 RVMDERNALKFPGRS 413
M + K PG S
Sbjct: 435 DTMRSNDVRKVPGFS 449
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 187/341 (54%), Gaps = 35/341 (10%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
A+++ Y + ++ LF +PER++ +WN+MITG ++ +L+ A+ LF+EMP RNVV
Sbjct: 230 NAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVV 289
Query: 167 SWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
SWT +++G + N S A P+++T L + A + Q +H
Sbjct: 290 SWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMI 349
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
K F FD + + L+ YAKCG I A K+F D+S E K+++SW +I+ +A HG G
Sbjct: 350 CKTPFQ-FDNFIESSLMKLYAKCGEIRLARKVF-DLSGE-KDVISWNGMIAAYAHHGAGV 406
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A+ +E+MQ+ KPN VT++ +L+ACSH GL HY CL
Sbjct: 407 EAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCL 466
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
+D+ RAGRL+ A+++ G+ + T V LLG C+ HGN +G+ R +LE E N
Sbjct: 467 IDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDN 526
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G Y L+ NI A G++ +A ++R M++R K PG S +
Sbjct: 527 AGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 567
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
+ A+ ++ ++ V NT ++ Y S G + + LFD +P R+ +WN+++ LV+ G
Sbjct: 120 EARALFDRMPERNVVSWNT-MLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSG 178
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQ 202
++ AR LFE MP RNV+SWT ++ G R ++ A E + ++ A++
Sbjct: 179 TMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMI----- 233
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
+G RN ++ D+ N +I + + + A +LF+++ ++N+VSW
Sbjct: 234 SGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMP--KRNVVSW 291
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLV 315
T++++G + A++ F M G++PN+VTFL ++A S+ GL G V
Sbjct: 292 TTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQV 345
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 21/204 (10%)
Query: 92 AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELE 151
AV S F SHV + + G + D+ +LFD P+R++V+W M+ + G+L
Sbjct: 29 AVFSTDAF-SHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLH 87
Query: 152 YARSLFEEMPC-RNVVSWTGILDGYTRMNRSNGASTEPSEI---------TILAVLPAIW 201
A +L RNVV+WT +L GY R R + A + T+L +
Sbjct: 88 EASALLHRPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAG 147
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+ GA C L G + D N L+ + G + A +LFE + +N++S
Sbjct: 148 RMGAA--CALFDGMPVR------DAGSWNILLAALVRSGTMDEARRLFE--RMPERNVMS 197
Query: 262 WTSIISGFAMHGMGKAAVENFERM 285
WT++ISG A G A F+ M
Sbjct: 198 WTTMISGLARSGSADEARALFDGM 221
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 121/280 (43%), Gaps = 51/280 (18%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+H +I K FQ ++ ++L+ +Y G ++ + K+FD E+++++WN MI
Sbjct: 342 GQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAH 401
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G A +L+E+M + NR +P+++T + +L A +G V
Sbjct: 402 HGAGVEAIALYEKM----------------QENR-----YKPNDVTYVGLLSACSHSGLV 440
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
I Y K A +CLID ++ G + A +L + ++ + W++++
Sbjct: 441 DEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALL 500
Query: 267 SGFAMHG---MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR 323
G HG +G A N +L A Y L ++ AG+
Sbjct: 501 GGCNAHGNESIGDLAARN------------------LLEAEPDNAGTYTLLSNIYASAGK 542
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
++A KI SE+ D +++ CS+ +E+ +V
Sbjct: 543 WKEAAKIR----SEMNDRGLKK--QPGCSW---IELANKV 573
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 206/438 (47%), Gaps = 96/438 (21%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS----- 123
+T+ L++ C + G ++HA I K GF+ ++V +L++MY G + D+
Sbjct: 11 YTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEV 70
Query: 124 --------------------------KLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
+LF+E+PER+L +WN MI G V G++ A LF
Sbjct: 71 CSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLF 130
Query: 158 EEMPCRNVVSWTGILDGYT----------------------------------------R 177
+MP R++VSW ++DGY R
Sbjct: 131 NKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLR 190
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
M T P+E T+++VL A G + + IH Y + D+ +S L+ YA
Sbjct: 191 MFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYA 250
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + A +F+ +S +++VSW S+I G+ MHG A+E F M+K G PN TF
Sbjct: 251 KCGAMDLARDVFDKMS--NRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATF 308
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL+AC+H G+ HYGC+VD+LGRAG ++ E++ +P
Sbjct: 309 ICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMP 368
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
E + LL AC H N E+ E V ++++E+E + G Y+L+ NI A G++ D E
Sbjct: 369 ME-GGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVE 427
Query: 396 RLRRVMDERNALKFPGRS 413
+R++M ER K G S
Sbjct: 428 IVRKMMKERGLTKTTGLS 445
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P+ T ++ W+ G++ + + IH K GF D+ V N LI Y+ CG I A
Sbjct: 8 PNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFE-LDLFVRNSLIHMYSVCGRIGDARA 66
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
+FE S+ +LV+W S+I G+ +G AA E FE M + L
Sbjct: 67 MFEVCSI--SDLVTWNSMIDGYVKNGEIGAARELFEEMPERDL 107
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 225/438 (51%), Gaps = 59/438 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++N ++ ++ + + KK+ L+K++ + + FTYSFL+ CV
Sbjct: 90 TTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEA--------NGFTYSFLLSACVRSRLF 141
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-----LKDSSKLFDELPERNLVTWNV 139
G Q+H + G+ S++YV T L+N+Y + G LK + LFDE+P+ N+V WN
Sbjct: 142 REGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNS 201
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPS 189
++ G V+ G+ + AR +F+EMP RNV +WT ++ G+ + ++ A E
Sbjct: 202 LLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELD 261
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEK----RGFNAFDIRVSNCLIDTYAKCGCIFSA 245
++ ++A L A + G + + IHGY E+ R + ++N LI YA CG + A
Sbjct: 262 QVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVL-VSLNNALIHMYASCGVMDLA 320
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG---LKPNRVTFLSVLN 302
K+FE+I ++N VSW+SII+GFA G G A+ F+ M G ++P+ +TF+ L
Sbjct: 321 YKVFEEIP--QRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALT 378
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HYGC+VD+L RAG L +A + +P + +
Sbjct: 379 ACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNN 438
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKV-LEMERGN--GGDYVLMYNILAGVGRYVDAERL 397
V +L G C H N E+ V + + E+ N G ++L+ N+ A GR+ D +
Sbjct: 439 AVWGALLSG-CRLHKNDEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATV 497
Query: 398 RRVMDERNALKFPGRSLV 415
RR M + K GRS +
Sbjct: 498 RRNMHDIGVKKPSGRSWI 515
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 30/261 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
F +S L ++CV S+ NL ++HA I GF Y+ L+++Y+S G L + K+F
Sbjct: 27 QQFIFSVL-KSCV--SFRNLA-KIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVF 82
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGILDGYTRMNRSN 182
+++ + WN +I G + + + LF+ M V +++ +L R +
Sbjct: 83 EDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVR----S 138
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS------------- 229
E +I ++ W N VR LI+ Y FD++ +
Sbjct: 139 RLFREGEQIHGRVLVNGYWSNLYVRT-NLINLYANGGDGGDFDLKRARYLFDEMPDSNVV 197
Query: 230 --NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
N L+ Y + G A K+F+++ +N+ +WT +++GFA +G K A+ F++M++
Sbjct: 198 GWNSLLAGYVRRGDFDGARKVFDEMP--ERNVRTWTIMVAGFAQNGQCKLALSLFDQMRR 255
Query: 288 VGLKPNRVTFLSVLNACSHGG 308
G++ ++V ++ L+AC+ G
Sbjct: 256 AGVELDQVALVAALSACAELG 276
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 194/380 (51%), Gaps = 67/380 (17%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
+ +V + T+++N Y+ L + + FD PER++V WN M+ G ++ G + ARSLF++
Sbjct: 53 EKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLFDQ 112
Query: 160 MPCRNVVSWTGILDGYTRMNR---------------------------SNGASTE----- 187
MPCR+V+SW +L+GY + NG +E
Sbjct: 113 MPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSF 172
Query: 188 ----------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
P++ T+ VL A + GA + +H YGE G+N D+ V N LID Y
Sbjct: 173 KRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYG 232
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG I A+++F+ I +R++L+SW ++I+G A HG G A++ F M+ G+ P++VTF
Sbjct: 233 KCGAIEIAMEVFKGI--KRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTF 290
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL AC H GL H GC+VD+L RAG L QA + +P
Sbjct: 291 VGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMP 350
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ D V+ LLGA + V+ GE ++++++E N ++V++ NI GR+ DA
Sbjct: 351 VK-ADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRFDDAA 409
Query: 396 RLRRVMDERNALKFPGRSLV 415
RL+ M + K G S +
Sbjct: 410 RLKVAMRDTGFKKEAGISWI 429
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 109/272 (40%), Gaps = 50/272 (18%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDE 128
T + ++ C L + G ++H +G+ V V AL++MY G ++ + ++F
Sbjct: 187 TLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKG 246
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGILDGYTRMNR-SNG 183
+ R+L++WN MI GL G A LF EM + V++ G+L M +G
Sbjct: 247 IKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDG 306
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+ S T ++ P I G C++D ++ G +
Sbjct: 307 LAYFNSMFTDFSITPQIEHCG--------------------------CVVDLLSRAGFLT 340
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-NRVTFLSVLN 302
A++ + V + + V W +++ ++ K + + L+P N F+ + N
Sbjct: 341 QAVEFINKMPV-KADAVIWATLLGASKVY--KKVDTGELALKELIKLEPRNPANFVMLSN 397
Query: 303 ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334
+ G AGR + A ++ + +
Sbjct: 398 --------------IYGDAGRFDDAARLKVAM 415
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 135/423 (31%), Positives = 225/423 (53%), Gaps = 50/423 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC--VTL 81
+ ++N+++ Y L+ PK+A L Y L L + +T+ LI+ C V
Sbjct: 74 NIFMYNSMIRGYFLSRFPKQAILCYLDLMD--------RGFLANKYTFPPLIKACALVYR 125
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+G +HA + +G+++ +V +ALV Y SL LK + LFD+ +++V W VM+
Sbjct: 126 ELKRIGYLVHAHVIVLGYENDAFVVSALVEFY-SLFDLKVARVLFDKSSGKDVVVWTVMV 184
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEI 191
G K G++E AR LF+EMP RNV+SW+ ++ Y+R++ + + P++
Sbjct: 185 DGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDS 244
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
I++VL A GA+ +H Y ++ G ++ I ++ L+D Y+KCG I SAL++FE
Sbjct: 245 VIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPI-LATALVDMYSKCGYIESALEVFEG 303
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
IS K+ +W ++ISGFAM G ++E F++M G + TF+S+L AC+H +
Sbjct: 304 IS--NKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVE 361
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIA---LGIPSEITDVVVRRI 346
HY C+VD++ RAG +E AEK +G S + D V
Sbjct: 362 RGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNV-DANVWGA 420
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+L AC + N+E+G+R+ K+ + +GG VL YNI + GR + A+ +R+ E +
Sbjct: 421 ILSACRQYRNIEIGDRIWTKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARS 480
Query: 407 LKF 409
K+
Sbjct: 481 KKY 483
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 135/416 (32%), Positives = 206/416 (49%), Gaps = 75/416 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ K+A LL++ +++ P +S S L C + +LG
Sbjct: 229 WNAMIAGYAQMGRSKEALLLFEDMRKANV-------PPNESTIVSVL-SACAQSNALDLG 280
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + I G S++ + AL++MY K
Sbjct: 281 NSMRSWIEDRGLCSNLKLVNALIDMYS-------------------------------KC 309
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G+L+ AR LF++M R+V+SW ++ GYT M A EP+EIT L++L
Sbjct: 310 GDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSIL 369
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
P+ GA+ + IH Y K FN+ +S LID YAKCG I +A ++F+ + + K
Sbjct: 370 PSCAHLGAIDLGKWIHAYINK-NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKI--K 426
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+L SW ++I G AMHG A E F +M G++PN +TF+ +L+AC H GL
Sbjct: 427 SLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFF 486
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC++D+LGRAG E+AE + + + D + LLGAC HG
Sbjct: 487 SSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVK-PDGAIWGSLLGACRDHG 545
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
VE+GE V ++ E+E N G YVL+ NI AG G++ D R+R +++R K PG
Sbjct: 546 RVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPG 601
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 176/293 (60%), Gaps = 21/293 (7%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N+++ S++ SP A + + ++ IY S + P +S+T+ FL+++C L+ +
Sbjct: 95 FIWNSMIRGLSMSLSPALALVFF--VRMIY----SGVEP--NSYTFPFLLKSCAKLASAH 146
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+HA + K+GF S V+++T+L+NMY G + ++ +FD+ R+ +++ +I G
Sbjct: 147 EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYA 206
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILA 195
WG ++ AR LF+EMP ++VVSW ++ GY +M RS A+ P+E TI++
Sbjct: 207 LWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVS 266
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q+ A+ + + E RG + ++++ N LID Y+KCG + +A +LF+D+ +E
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCS-NLKLVNALIDMYSKCGDLQTARELFDDM-LE 324
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
R +++SW +I G+ K A+ F M G++P +TFLS+L +C+H G
Sbjct: 325 R-DVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLG 376
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 77/284 (27%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG-------------YTRMNRSNGAS 185
+ + + + G++ YA SLF + N+ W ++ G + RM S
Sbjct: 68 IEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSG--- 124
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI--- 242
EP+ T +L + + + + IH + K GF + D+ + LI+ YA+ G +
Sbjct: 125 VEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVS-DVFIHTSLINMYAQSGEMNNA 183
Query: 243 --------------FSAL--------------KLFEDISVERKNLVSWTSIISGFAMHGM 274
F+AL +LF+++ V K++VSW ++I+G+A G
Sbjct: 184 QLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPV--KDVVSWNAMIAGYAQMGR 241
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHG-GLHYG--------------------C 313
K A+ FE M+K + PN T +SVL+AC+ L G
Sbjct: 242 SKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNA 301
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA----CSF 353
L+DM + G L+ A ++ + DV+ +++G CS+
Sbjct: 302 LIDMYSKCGDLQTARELFDDMLER--DVISWNVMIGGYTHMCSY 343
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75
L + L + +N ++ Y+ S K+A L++++ S + P T+ ++
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLA------SGVEPT--EITFLSIL 369
Query: 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV 135
+C L +LG +HA I+K ++T+L+++Y G + + ++FD + ++L
Sbjct: 370 PSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLA 429
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
+WN MI GL G+ + A LF +M + EP+EIT +
Sbjct: 430 SWNAMICGLAMHGQADKAFELFSKMSSDGI---------------------EPNEITFVG 468
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAF--DIRVS------NCLIDTYAKCGCIFSALK 247
+L A G V Q + F++ D ++S C+ID + G A
Sbjct: 469 ILSACKHAGLVDLGQ--------QFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAES 520
Query: 248 LFEDISVERKNLVSWTSIISGFAMHG 273
L +++ V+ + W S++ HG
Sbjct: 521 LLQNMEVKPDGAI-WGSLLGACRDHG 545
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCL-IDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
++R + IH + K G + +S + ++ G I A+ LF S+E NL W
Sbjct: 41 SIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFN--SIEEPNLFIWN 98
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR 323
S+I G +M A+ F RM G++PN TF +L +C+ G+
Sbjct: 99 SMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLA---------SAHEGK 149
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
A + LG ++DV + L+ + G + + V ++ N D +
Sbjct: 150 QIHAHVLKLGF---VSDVFIHTSLINMYAQSGEMNNAQLV------FDQSNFRDAISFTA 200
Query: 384 ILAGVGRYVDAERLRRVMDE 403
++AG + +R R++ DE
Sbjct: 201 LIAGYALWGYMDRARQLFDE 220
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 180/315 (57%), Gaps = 36/315 (11%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
++V+W M+ GL + G ++ AR +F+ MP RN+VSW ++ GY + +R A E+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 193 ILAV----------LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
L V L A GA+ + I+ + E+ G D +++ ++D Y KCGC+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIE-VDAKLATAVVDMYCKCGCV 281
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +F+ S+ + L +W +I GFA+HG A+E F +M+ G+ P+ VT L+VL
Sbjct: 282 DEAWGVFD--SLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLT 339
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC+H G HYGC+VD+ GRAG+L++A+K+ +P + D
Sbjct: 340 ACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMD-PD 398
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+ V LLGAC HG+V++GE + +V++++ N G YVL+ N+LAG GR+ + ++RR+
Sbjct: 399 LAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRL 458
Query: 401 MDERNALKFPGRSLV 415
MDERN K GRS++
Sbjct: 459 MDERNVSKEAGRSVI 473
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 196/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG LH K+G ++HV V TA++ MY G +K + +FD + ++N VTWN MI G
Sbjct: 91 LGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGY 150
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G+++ A +F++MP R+++SWT +++G+ A +P + I+
Sbjct: 151 MRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAII 210
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ +H Y + F ++RVSN LID Y +CGC+ A ++F+ +
Sbjct: 211 AALNACTNLGALSFGLWVHRYVMSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFDKM-- 267
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ KP+ VTF L ACSH GL
Sbjct: 268 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGL 327
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE A K+ +P + +VV+ LL AC
Sbjct: 328 RYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGS-LLAACR 386
Query: 353 FHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG N + E++ + + ++ + +YV++ N+ A G++ A ++RR M K PG
Sbjct: 387 NHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPG 446
Query: 412 RSLV 415
S +
Sbjct: 447 FSSI 450
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 107/271 (39%), Gaps = 66/271 (24%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L + G +H + F+++V V+ +L+++Y G ++ + ++FD++ +R +
Sbjct: 213 LNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 272
Query: 135 VTWNVMITGLVKWG----ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
V+WN +I G G L Y R + EE +P
Sbjct: 273 VSWNSVIVGFAANGNAHESLVYFRKMQEE-------------------------RFKPDA 307
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN-----------CLIDTYAKC 239
+T L A G V + G F I +S+ CL+D Y++
Sbjct: 308 VTFTGALTACSHVGLV-----------EEGLRYFQIMISDYRISPRIEHYGCLVDLYSRA 356
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + ALKL + + + + N V S+++ HG E + L+
Sbjct: 357 GRLEDALKLVQSMPM-KPNEVVIGSLLAACRNHGNNTVLAEKL------------MKHLT 403
Query: 300 VLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
LN SH +Y L +M G+ E A K+
Sbjct: 404 DLNVKSHS--NYVILSNMYAADGKWEGASKM 432
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
+N VSWTS I+ +G A + F M+ G++PN +TF+++L+ C
Sbjct: 34 ENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGC 81
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 235/494 (47%), Gaps = 95/494 (19%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH--- 59
SS+ +TT++ S S+ H +FN PK F ++ + T+SH
Sbjct: 111 SSSLITTQLISSSSLRKSINHSLAVFNH--------HKPKNLFTFNALIRGLTTNSHFFN 162
Query: 60 ----------SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109
S ++P D TY F++++ L LG +H +I + G + +V +L
Sbjct: 163 AIFHFRLMLRSGIKP--DRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSL 220
Query: 110 VNMYVSL------------------------------------GFLKDSSKLFDELPERN 133
V+MYV + G +K + KLF +P++
Sbjct: 221 VDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKE 280
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
V+W+ +I G K G+++ A LF++MP +NVVSWT ++DG++R S A
Sbjct: 281 NVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLE 340
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P+ TI++ L A + G + IH Y + G + + + L+D YAKCG I
Sbjct: 341 EGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEA-LGTALVDMYAKCGNIE 399
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
SA ++F + E+K++ +WT +I G+A+HG + A+ F++M G+KP+ V FL++L A
Sbjct: 400 SASEVFGE--TEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTA 457
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C H G HY +VDMLGR+G+L++A + +P D
Sbjct: 458 CMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMN-PDF 516
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ L AC H +M + K+L++E + G+Y+ + N A +G++ DAER+R +M
Sbjct: 517 VIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLM 576
Query: 402 DERNALKFPGRSLV 415
R K G S +
Sbjct: 577 QNRGVHKNSGWSCI 590
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 197/353 (55%), Gaps = 48/353 (13%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +H+V+ + GF S +YV +L+++Y + G + + K+FD++PE++LV WN +I G
Sbjct: 6 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G+ E A +L+ EM N +P TI+++L A + GA
Sbjct: 66 ENGKPEEALALYTEM---------------------NSKGIKPDGFTIVSLLSACAKIGA 104
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H Y K G ++ SN L+D YA+CG + A LF+++ KN VSWTS+
Sbjct: 105 LTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--DKNSVSWTSL 161
Query: 266 ISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGL--------------- 309
I G A++G GK A+E F+ M+ GL P +TF+ +L ACSH G+
Sbjct: 162 IVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEY 221
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
H+GC+VD+L RAG++++A + +P + +VV+ R LLGAC+ HG+ ++ E
Sbjct: 222 KIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLAEF 280
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++L++E + GDYVL+ N+ A R+ D +++R+ M K PG SLV
Sbjct: 281 ARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 333
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 127/268 (47%), Gaps = 35/268 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N++++ ++ P++A LY ++ ++P D FT L+ C + LG
Sbjct: 57 WNSVINGFAENGKPEEALALYTEMNS------KGIKP--DGFTIVSLLSACAKIGALTLG 108
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + KVG +++ + L+++Y G ++++ LFDE+ ++N V+W +I GL
Sbjct: 109 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 168
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A LF+ M S G+L P EIT + +L A G V+
Sbjct: 169 GFGKEAIELFKYME-----STEGLL---------------PCEITFVGILYACSHCGMVK 208
Query: 208 NCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + R + R+ + C++D A+ G + A + + + ++ N+V W ++
Sbjct: 209 --EGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTL 265
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ +HG A F R+Q + L+PN
Sbjct: 266 LGACTVHGDSDLA--EFARIQILQLEPN 291
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 193/354 (54%), Gaps = 37/354 (10%)
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSK-LFDELPERNLVTWNVMITGLVKWGELEYAR 154
K G +H V +L+ +Y SLG + + + L+ ++V+WN M++G K G+L AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165
Query: 155 SLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNG 204
+F MP RN+VSW+ ++D R +R P + +++VL A G
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225
Query: 205 AVRNCQLIHGYGEKRGFNAF--DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
AV + +H Y E F ++ + L+D Y KCGC+ A ++F+ V R+++V W
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFD--GVHRRDVVLW 283
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
++I G AM+G G+ A+E F RM + G PN TF++VL AC+H G
Sbjct: 284 NAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD 343
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HYGCL D+LGRAG +E+AE + L +P E L+ +C H ++ +GE
Sbjct: 344 YGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPME-PHASQWGALMSSCQMHNDINVGE 402
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
RV ++++E+E +GG YV+++N+ A GR+ +A +R++M++R A K G S +
Sbjct: 403 RVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFI 456
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 209/418 (50%), Gaps = 74/418 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ +S + P K+ L+ Q++ H + P D FT ++R C LG
Sbjct: 78 WNIIIGEFSRSHLPHKSIDLFLQMR----HFNQPP----DVFTLPLVLRACAASGSVKLG 129
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + ++G + ++V +ALV MYV+ G K+ D
Sbjct: 130 VSVHGLCVEMGMEKSLFVASALVFMYVTFG------KVLD-------------------- 163
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVL 197
AR LF+EMP R+ V WT +L GY + + A + ++++L
Sbjct: 164 -----ARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLL 218
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q G +++ + +HG+ +R A + + N L+ Y KC + + LF+ + +
Sbjct: 219 LACGQLGWLKHGKSVHGWITRRCL-ALGLNLGNALVYFYVKCAALGYSYNLFDKMP--ER 275
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+++SW+SII G+ + G A++ F+RM+ G+KPN VTFL L+AC+H G+
Sbjct: 276 DVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVERAHTYF 335
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HY C+VD LGRAG LE AE+ +P E D V LLG C HGN
Sbjct: 336 EMMKEYGVAPELKHYACMVDCLGRAGMLEDAERFIEEMPVE-ADGAVLGALLGGCRVHGN 394
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
E+GERV +K++ +E +YV++ NI AG GR+ DAE++R++M +R K PG S
Sbjct: 395 AEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLSKVPGCSF 452
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 216/419 (51%), Gaps = 60/419 (14%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+L+N +++ Y+ KA +++K++ + FT + ++ ++
Sbjct: 140 VVLWNAMINGYTKIGHLNKAVVVFKRMGEEGIS--------LSRFTTTSILSILTSMGDI 191
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
N G +H +++K+G+ S V V+ AL++MY +D+ +F+ + E++L +WN +I+
Sbjct: 192 NNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAH 251
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ + + LF +M G+ P ITI AVLPA
Sbjct: 252 EQCDDHDGTLRLFGKML---------------------GSRVLPDVITITAVLPACSHLA 290
Query: 205 AVRNCQLIHGY----GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
A+ + + IHGY G + N D+ ++N ++D YAKCGC+ +A +F+ + K++
Sbjct: 291 ALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFD--LMRNKDVA 348
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------- 309
SW +I G+AMHG G A++ F RM + +KP+ VTF+ VL+ACSH G
Sbjct: 349 SWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRM 408
Query: 310 -----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
HY C++DMLGRAG L +A +A IP E ++++ LLGAC HGN E
Sbjct: 409 ELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLE-DNLILWMALLGACRLHGNAE 467
Query: 359 MGERVTRKVLEME--RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+G V K+ ++E G Y+LM ++ VGRY +A +RR M E+N K PG S +
Sbjct: 468 LGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWI 526
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 35/279 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + F YK+++ + + P D FT+ ++R C
Sbjct: 45 YNAIIAGFVANGLAADGFQFYKRMRSV------GVMP--DKFTFPCVVRACCEFMEVR-- 94
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + K+G + +V+V +ALVN Y+ + +D+ K+F+ELPER++V WN MI G K
Sbjct: 95 -KIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKI 153
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G L A +F+ RM + + + +IL++L ++ G +
Sbjct: 154 GHLNKAVVVFK------------------RMGEEGISLSRFTTTSILSILTSM---GDIN 192
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
N + IHG K G+++ + VSN LID Y KC AL +FE I+ K+L SW SIIS
Sbjct: 193 NGRAIHGIVTKMGYSSC-VAVSNALIDMYGKCKHTEDALMIFEMIN--EKDLFSWNSIIS 249
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+ F +M + P+ +T +VL ACSH
Sbjct: 250 AHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSH 288
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LI+ Y++C + A+ +F D ER N+ ++ +II+GF +G+ + ++RM+ VG+
Sbjct: 16 LINMYSRCNQMEEAVLVFRDPYHER-NVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVM 74
Query: 292 PNRVTFLSVLNAC 304
P++ TF V+ AC
Sbjct: 75 PDKFTFPCVVRAC 87
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 195/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
L LH K+G ++HV V TA++ MY G +K + +FD + + N VTWN MI G
Sbjct: 82 LSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGY 141
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G+++ A +F++MP R+++SWT +++G+ + A P + I+
Sbjct: 142 MRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAII 201
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ +H Y + F ++RVSN LID Y +CGC+ A ++F+ +
Sbjct: 202 AALNACTNLGALSFGLWVHRYVMNQDFKN-NVRVSNSLIDLYCRCGCVEFAREVFDKM-- 258
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ VTF L ACSH GL
Sbjct: 259 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL 318
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE A K+ +P + +VV+ LL AC
Sbjct: 319 RYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGS-LLAACR 377
Query: 353 FHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG N + ER+ + + ++ + +YV++ N+ A G++ A ++RR M K PG
Sbjct: 378 THGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPG 437
Query: 412 RSLV 415
S +
Sbjct: 438 FSSI 441
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 57/215 (26%)
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+W IT L + G L A F +M V EP+ IT +
Sbjct: 28 VSWTSRITLLTRNGRLAEAAKXFSDMRLSGV---------------------EPNHITFI 66
Query: 195 AVLPAI--WQNGAVRNCQLIHGYGEKRGFNAFDIRVS----------------------- 229
A+L + +G+ L+HGY K G + + V
Sbjct: 67 ALLSGCGDFPSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYM 126
Query: 230 --------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
N +ID Y + G + +A+K+F+ + ++L+SWT++I+GF G + A+
Sbjct: 127 EDINSVTWNTMIDGYMRSGQVDNAVKMFDKMP--ERDLISWTAMINGFVKKGFHEEALVW 184
Query: 282 FERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLV 315
F MQ G++P+ V ++ LNAC++ G L +G V
Sbjct: 185 FREMQISGVRPDYVAIIAALNACTNLGALSFGLWV 219
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 46/290 (15%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
++A + ++++Q S +RP D + C L + G +H + F++
Sbjct: 179 EEALVWFREMQI------SGVRP--DYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKN 230
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
+V V+ +L+++Y G ++ + ++FD++ +R +V+WN +I G G + F +M
Sbjct: 231 NVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQ 290
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+G+ +P +T L A G V L + KR +
Sbjct: 291 ----------EEGF-----------KPDAVTFTGALTACSHVGLVEE-GLRYFQTMKRDY 328
Query: 222 N-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ I CL+D Y++ G + ALK+ E + + + N V S+++ HG
Sbjct: 329 GISPRIEHYGCLVDLYSRAGRLEDALKVIESMPM-KPNEVVIGSLLAACRTHGNNTVLA- 386
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
ER+ K LS LN SH +Y L +M G+ E A ++
Sbjct: 387 --ERLMK---------HLSDLNVKSHS--NYVILSNMYAADGKWEGASQM 423
>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 794
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 193/375 (51%), Gaps = 50/375 (13%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P D+ + SF ++ S + QLHA++ ++G + V + T L++ Y G L +
Sbjct: 107 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 166
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSL-------FEEMPCRNVVSWTGILDGYT 176
K+FDE+ R++ TWN ++ GL + E A +L F+E+P R
Sbjct: 167 KVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSRE------------ 214
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
EP+E+TI+A L A Q G +++ +H + ++ G + ++RV N LID Y
Sbjct: 215 ----------EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMY 263
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+KCG + AL +F I E + LVS+ + I +MHG G A+ F+ M ++P+ VT
Sbjct: 264 SKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVT 322
Query: 297 FLSVLNACSHGGL------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+L+VL C+H GL HYG +VD+LGRAGRL +A + +P
Sbjct: 323 YLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP- 381
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D+V+ + LLGA HG VE+ E K+ E+ GDYVL+ N+ A R++D R+R
Sbjct: 382 ADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVR 441
Query: 399 RVMDERNALKFPGRS 413
M + K PG S
Sbjct: 442 DTMRSNDVRKVPGFS 456
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 147/534 (27%), Positives = 242/534 (45%), Gaps = 143/534 (26%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKA-FLLYKQLQQIYTHSHSPLRPLFDSFT 70
H H ++++ + L+N ++ +S P+KA FLL L+ + P+ D F+
Sbjct: 80 HEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLE-----NGVPV----DKFS 130
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISK----------------------VGFQSHVYVN-- 106
+S ++ C L + GTQ+H + K +GF V+
Sbjct: 131 FSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMP 190
Query: 107 -------TALVNMYVSLGFLKDS----------------------------------SKL 125
++++ Y+ G ++ + +KL
Sbjct: 191 QRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKL 250
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FDE+PE++L++WN MI G VK G +E A+ LF+ MP R+VV+W ++DGY ++ + A
Sbjct: 251 FDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAK 310
Query: 186 T------------------------------------------EPSEITILAVLPAIWQN 203
T P E +++ VL A Q
Sbjct: 311 TLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQL 370
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
G + +H Y ++ F + ++ LID Y+KCG I A+++FE I E K++ W
Sbjct: 371 GRLSKAIDMHLYIVEKQFPSSG-KLGVALIDMYSKCGSIQHAMRVFEGI--ESKSIDHWN 427
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
++I G A+HG+G++A + ++++ +KP+ +TF+ VLNACSH GL
Sbjct: 428 AMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRK 487
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HYGC+VD+L R+G +E A+ + G+P E D V+ R L ACS H E GE
Sbjct: 488 HKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPND-VIWRTFLTACSHHKEFETGE 546
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V + ++ N YVL+ N+ A G + D R+R +M E+N K PG S +
Sbjct: 547 LVAKHLILQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWI 600
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 210/427 (49%), Gaps = 55/427 (12%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFT 70
+ +H+L + + +N ++ Y K+ ++K + ++ R FD T
Sbjct: 223 VAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEV--------RAPFDEVT 274
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+ C L NLG + + G + TALV+MY G L + +LFD +
Sbjct: 275 LLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMH 334
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
R++V W+ MI+G + A ++F EM G P++
Sbjct: 335 SRDVVAWSAMISGYTQSDRCREALAIFNEM---------------------QGTEVNPND 373
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+T+++VL A GA+ + +H Y ++ + + L+D YAKCGCI A+K FE
Sbjct: 374 VTMVSVLSACAVLGALETGKWVHSYIRRKDL-PLTVILGTALVDFYAKCGCIKDAVKAFE 432
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+ V +N +WT++I G A +G + A+E F M + ++P VTF+ VL ACSHG L
Sbjct: 433 SMPV--RNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLV 490
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGC+VD+LGRAG +++A + +P E + VV R LL
Sbjct: 491 EEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIE-PNAVVWRALL 549
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
AC+ H NVE+GE ++++ ++ + G+Y+L+ N A VG++ +A +R+ M E+ K
Sbjct: 550 SACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEK 609
Query: 409 FPGRSLV 415
PG SL+
Sbjct: 610 IPGCSLI 616
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 136/281 (48%), Gaps = 37/281 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L+ + A P+ A L+ ++ + + SP D T + +++C + ++G
Sbjct: 138 YNILIRSFLRAGHPEDALHLF--VEMLDDTAVSP-----DQHTVANTVKSCSRMCDLSVG 190
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ A K GF +V +L++MY S G + + LF + + ++ WN MI G VK
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ + +F+ G+L+ + E+T+L+V A + G
Sbjct: 251 GDWKEVVEMFK-----------GMLEVRAPFD----------EVTLLSVATACGRLGDAN 289
Query: 208 NCQLIHGYGEKRGFNAFDIRVSN---CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
Q I Y E++G +R N L+D YAKCG + A +LF+ + +++V+W++
Sbjct: 290 LGQWIAEYAEEKGM----LRSRNLATALVDMYAKCGELDKARRLFD--RMHSRDVVAWSA 343
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+ISG+ + A+ F MQ + PN VT +SVL+AC+
Sbjct: 344 MISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 54/227 (23%)
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P R+ ++N++I ++ G E A LF EM VS D +T N S
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVS----PDQHTVANTVKSCS---- 182
Query: 190 EITILAVLPAIWQNGAVRNCQL-----IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
R C L + Y KRGF D V N LI YA CG + +
Sbjct: 183 -----------------RMCDLSVGRGVQAYAFKRGF-MVDQFVLNSLIHMYASCGDVVA 224
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A LF + V K +++W ++I+G+ +G K VE F+ M +V + VT LSV AC
Sbjct: 225 AHVLFHTVQV--KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATAC 282
Query: 305 SH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
G + G LVDM + G L++A ++
Sbjct: 283 GRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRL 329
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 206/400 (51%), Gaps = 44/400 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ +L Y A + ++A LL+ HS R + D + ++ TC G
Sbjct: 138 WGVMLDCYCQARNYEEALLLF--------HSMKRSRVVPDQVIIATVLSTCAHTRNLRFG 189
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+ + V+ AL+NMY S ++ + KL++ + E+ +V M+ G K
Sbjct: 190 KAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKN 249
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++E A S+F MP ++VVSW+ ++ GY ++ A +P EIT+L+V+
Sbjct: 250 GKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVI 309
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA+ + IH + E + + N LID ++KCG + AL +F ++ +K
Sbjct: 310 SACANVGALEKARCIHSFVENHSMCKI-LPIGNALIDMFSKCGSLTLALDVFN--AMPQK 366
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N+V+WTSII+ AMHG G++A+ FE M+ G++PN VTFL +L AC H GL
Sbjct: 367 NVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLF 426
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LGRA L QA + + +VV+ LL AC HG
Sbjct: 427 KIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLR-PNVVIWGSLLAACRMHG 485
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
++E+G +K+LE++ +GG VL+ NI A G + D +
Sbjct: 486 DLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVK 525
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 137/324 (42%), Gaps = 76/324 (23%)
Query: 85 NLGTQ--LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
+LGT H + +VG + +V TALV Y + G ++D+ ++FD +P+R+LV W VM+
Sbjct: 84 SLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLD 143
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
+ E A LF M VV P ++ I VL
Sbjct: 144 CYCQARNYEEALLLFHSMKRSRVV---------------------PDQVIIATVLSTCAH 182
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER------ 256
+R + IH Y D +VS L++ YA C + A KL+ +S +
Sbjct: 183 TRNLRFGKAIHSYMLVSD-TLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTT 241
Query: 257 -----------------------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
K++VSW+++I+G+A A+ F MQ+ G+KP+
Sbjct: 242 MVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPD 301
Query: 294 RVTFLSVLNACSHGGL-------------HYGC--------LVDMLGRAGRLEQAEKIAL 332
+T LSV++AC++ G H C L+DM + G L A +
Sbjct: 302 EITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFN 361
Query: 333 GIPSEITDVVVRRILLGACSFHGN 356
+P + +VV ++ A + HG+
Sbjct: 362 AMPQK--NVVTWTSIITASAMHGD 383
>gi|125526069|gb|EAY74183.1| hypothetical protein OsI_02067 [Oryza sativa Indica Group]
Length = 657
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 191/373 (51%), Gaps = 35/373 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C S + G QLH VI K GF +H +V L++ Y S F+ S F + +
Sbjct: 282 LVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHSQMQFKLSDKSH 341
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------G 183
+ +WN ++ L++ + AR LF++MP R+ +SW+ ++ GY + SN
Sbjct: 342 VASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLD 401
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
A EP+EIT+ + L A+ +G + + IH Y R D ++S LI+ YAKCG I
Sbjct: 402 AGVEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTD-KLSAGLINVYAKCGSIA 460
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLN 302
A++LF + + ++ W SII A+HG ++E F ++Q +KPN +T+L VLN
Sbjct: 461 EAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTNIKPNSITYLGVLN 520
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC H G+ HYGC+VD+L RAG LE+AE + +P + D
Sbjct: 521 ACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMK-AD 579
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
VV +L A GNV +GE+ ++ +++ +G + + N+ A G + + +R+
Sbjct: 580 VVAWGCILAAARTQGNVALGEKAAEELSKLDPSHGASKIALSNLYADAGHWSNVSVVRKE 639
Query: 401 MDERNALKFPGRS 413
+ N + G S
Sbjct: 640 LQNENLERLTGSS 652
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 45/260 (17%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
H V + G V V T LV+ Y ++ + + +F+ +P+RN VTWN M+ VK G +
Sbjct: 166 HGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMI 225
Query: 151 EYARSLFEEMPCRNVVSWTGILDGY-----------TRMNRSNGASTEPSEITILAVLPA 199
A +F +P R+ VSW ++DGY T + +E+ ++ ++ A
Sbjct: 226 NMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKA 285
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC-------------------- 239
++ AV Q +H K GF+A V LI Y C
Sbjct: 286 CSRHSAVSEGQQLHTVILKNGFDAHAF-VQATLIHYYGSCDFIDHSQMQFKLSDKSHVAS 344
Query: 240 -----------GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
+ A +LF+D+ ++ +SW+++ISG+ G A++ F M
Sbjct: 345 WNALMASLLRRNLVHEARQLFDDM--PERDTISWSTLISGYVQSGNSNMALQIFCSMLDA 402
Query: 289 GLKPNRVTFLSVLNACSHGG 308
G++PN +T S L+A ++ G
Sbjct: 403 GVEPNEITLASALSAVANSG 422
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 156/329 (47%), Gaps = 52/329 (15%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYV----SLGFLKDSS 123
F S L LS+ G QLHA+ +K G S+++V +L+ Y SL +
Sbjct: 12 FLVSSLKSAAARLSH---GEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAY----- 63
Query: 124 KLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
LFDE+P R+ N++++ L + G LE A+ L EMP R+ VS+T ++ +R
Sbjct: 64 HLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHP 123
Query: 182 NGA----------STEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
A + +P+E+T+ VL A+ +GA HG +RG + F I +N
Sbjct: 124 ERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATN 183
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+ Y + SA +FE + +N V+W ++++ + GM A E F G+
Sbjct: 184 -LVHAYGAVSQVPSARSIFE--LMPDRNTVTWNTMLNCYVKAGMINMAAEVF------GV 234
Query: 291 KPNR--VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
P R V++L++++ Y C D L +A R A +GI + + V+ L+
Sbjct: 235 IPERDEVSWLTMIDG-------YMC-ADFLLQALRTYVAMVGTVGIRA---NEVILVGLV 283
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGD 377
ACS H V G+++ +L+ NG D
Sbjct: 284 KACSRHSAVSEGQQLHTVILK----NGFD 308
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 191/378 (50%), Gaps = 71/378 (18%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPER------------------------------ 132
V+ TA+V YV G L ++ ++FDE+P++
Sbjct: 250 VFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF 309
Query: 133 -NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------MN----- 179
N+ +WN+MI+G + G+L AR+LF+ MP R+ VSW I+ GY + MN
Sbjct: 310 PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+ +G S S T L A A+ + +HG + G+ + V N L+ Y KC
Sbjct: 370 KRDGESLNRS--TFCCALSACADIAALELGKQVHGQVVRTGYEKGCL-VGNALVGMYCKC 426
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
GCI A +F+ V+ K++VSW ++++G+A HG G+ A+ FE M G+KP+ +T +
Sbjct: 427 GCIDEAYDVFQ--GVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVG 484
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
VL+ACSH GL HY C++D+LGRAG LE+A+ + +P E
Sbjct: 485 VLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFE 544
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
D LLGA HGN+E+GE+ V +ME N G YVL+ N+ A GR+VD ++
Sbjct: 545 -PDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKM 603
Query: 398 RRVMDERNALKFPGRSLV 415
R M + K PG S V
Sbjct: 604 RLKMRQIGVQKTPGYSWV 621
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 44/278 (15%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+ YV L D+ +LFD++P R+L++WN MI+G + G+L AR LFEE P R+V +W
Sbjct: 194 LMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTW 253
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNAF 224
T ++ Y + +G E V + Q + +I GY + + G F
Sbjct: 254 TAMVYAYVQ----DGMLDEARR-----VFDEMPQKREMSYNVMIAGYAQYKRMDMGRELF 304
Query: 225 D------IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+ I N +I Y + G + A LF+ + +++ VSW +II+G+A +G+ + A
Sbjct: 305 EEMPFPNIGSWNIMISGYCQNGDLAQARNLFD--MMPQRDSVSWAAIIAGYAQNGLYEEA 362
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACS-----------HG-----GLHYGC-----LVDM 317
+ M++ G NR TF L+AC+ HG G GC LV M
Sbjct: 363 MNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGM 422
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
+ G +++A + G+ + D+V +L + HG
Sbjct: 423 YCKCGCIDEAYDVFQGVQHK--DIVSWNTMLAGYARHG 458
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 149/330 (45%), Gaps = 42/330 (12%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS-----KLFDELPERNLVTWNVMITGLV 145
H ++ F + N+ N +S G+L+++ LFD++P ++L +WN+M+TG
Sbjct: 48 HCDLALCVFDAMPLRNSVSYNAMIS-GYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYA 106
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPA 199
+ L AR LF+ MP ++VVSW +L GY R + A + I+ +L A
Sbjct: 107 RNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAA 166
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
++G + + + + +++ NCL+ Y K + A +LF+ I V ++L
Sbjct: 167 YVRSGRLEEARRLF-----ESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPV--RDL 219
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG 319
+SW ++ISG+A G A FE P R F + +V
Sbjct: 220 ISWNTMISGYAQDGDLSQARRLFEE------SPVRDVFT------------WTAMVYAYV 261
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
+ G L++A ++ +P + + +++ + + ++MG + EM N G +
Sbjct: 262 QDGMLDEARRVFDEMPQKRE--MSYNVMIAGYAQYKRMDMGRELFE---EMPFPNIGSWN 316
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKF 409
+M + G A L +M +R+++ +
Sbjct: 317 IMISGYCQNGDLAQARNLFDMMPQRDSVSW 346
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 27/221 (12%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+ + C ++ LG Q+H + + G++ V ALV MY G + ++ +F +
Sbjct: 380 TFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV 439
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+++V+WN M+ G + G A ++FE M A +P
Sbjct: 440 QHKDIVSWNTMLAGYARHGFGRQALTVFESMIT---------------------AGVKPD 478
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
EIT++ VL A G R + H + G + + C+ID + GC+ A L
Sbjct: 479 EITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITP-NSKHYACMIDLLGRAGCLEEAQNL 537
Query: 249 FEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQ 286
++ E + +W +++ +HG +G+ A E +M+
Sbjct: 538 IRNMPFE-PDAATWGALLGASRIHGNMELGEQAAEMVFKME 577
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 174/319 (54%), Gaps = 36/319 (11%)
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN------ 182
+PE++LV+ MIT K+G ++ AR LF+ + R+ + W ++DGY + N
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 183 ----GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
A P+E+T+LAVL A Q GA+ + +H Y E G ++RV LID Y+K
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGI-GINVRVGTSLIDMYSK 119
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
CG + A +FE IS K++V+W S++ G+AMHG + A+ F+ M +G +P +TF+
Sbjct: 120 CGSLEDARLVFERIS--NKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFI 177
Query: 299 SVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPS 336
VLNACSH GL HYGC+V++LGRAG LE+A ++ +
Sbjct: 178 GVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEI 237
Query: 337 EITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396
+ D V+ LLGAC HGN+ +GE++ ++ N G YVL+ NI A G + R
Sbjct: 238 D-QDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVAR 296
Query: 397 LRRVMDERNALKFPGRSLV 415
+R +M E K PG S +
Sbjct: 297 VRTLMKESGFEKEPGCSSI 315
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 113/250 (45%), Gaps = 32/250 (12%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ +N ++ Y+ P + LL++Q+ ++ +RP + T ++ C
Sbjct: 37 AICWNVMIDGYAQHGLPNEGLLLFRQML------NAKVRP--NEVTVLAVLSACGQTGAL 88
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G +H+ I G +V V T+L++MY G L+D+ +F+ + +++V WN M+ G
Sbjct: 89 ETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGY 148
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G + A LF+EM + GY +P++IT + VL A G
Sbjct: 149 AMHGFSQDALRLFKEM----------CMIGY-----------QPTDITFIGVLNACSHAG 187
Query: 205 AV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
V + + ++ G + C+++ + G + A +L +++ ++ ++ V W
Sbjct: 188 LVSEGWKFFYSMKDEYGIEP-KVEHYGCMVNLLGRAGYLEEAYELVKNMEID-QDPVLWG 245
Query: 264 SIISGFAMHG 273
+++ +HG
Sbjct: 246 TLLGACRLHG 255
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 196/382 (51%), Gaps = 71/382 (18%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT+ F+++ C L G LH+++ K+GF S VYV L++ Y GFL
Sbjct: 86 DHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFL------- 135
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
++A FEEMP R++VSW+ ++ + + A
Sbjct: 136 ------------------------DFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALA 171
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+ +P E+ +L+V+ AI G + + I G+ + G F + + L+D
Sbjct: 172 LFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLE-FTVSLGTALVDM 230
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
+++CGCI ++++F+++ +N+++WT++I+G A+HG A+ F M+ G +P+ V
Sbjct: 231 FSRCGCIEESMRVFDEMG--ERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF VL ACSHGGL HYGC+VD+LGRAG L +A K G
Sbjct: 289 TFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDG 348
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + ++ R LLGAC H +E+ E+V K+ E++ + GDYVL+ N+ GVGR+ +
Sbjct: 349 MPIR-PNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAE 407
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+R M E+ K PG SL+
Sbjct: 408 KAGVRNSMREKRISKKPGCSLI 429
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 198/387 (51%), Gaps = 48/387 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT++ +I + L LG QLHA K+G + V+V +A+++ Y L +++ F
Sbjct: 98 NEFTFATVIHSSTGLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAF 157
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+++ + N+V++ +I G +K G+++ A LF+EMP RNVVSW ++ G+++M + A
Sbjct: 158 EDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVS 217
Query: 185 --------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
ST P IT A + ++ + C + + D+ V N
Sbjct: 218 LFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAV-------KSLCTSDVFVCN 270
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+ YAKCG + +L +F ++ +N VSW ++I GFA +G G+ AV FERM+ GL
Sbjct: 271 SLVSFYAKCGSMEDSLLVFNELP--DRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGL 328
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
+PN VT L +L AC+H GL HY C+VD+L R GRL++A
Sbjct: 329 RPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAA 388
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
K +P + + LLG C H N E+ + +K+L ++ + YV++ N +
Sbjct: 389 KFLHDLPFD-PGTGFWKALLGGCHIHSNAELSDLAAQKILALDPEDVSSYVMLSNAYSAA 447
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ +RR M E+ + PG S +
Sbjct: 448 GRWQQVSTIRREMKEKGLKRIPGCSWI 474
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 27/203 (13%)
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV-----------SWT 169
D +LFDE+PE ++++ +I + E A LF M N+ S T
Sbjct: 51 DVDELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSST 110
Query: 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-DIRV 228
G+ + Y + + A T + + + + + + C + E R NAF DI+
Sbjct: 111 GLKNIY--LGKQLHARTMKMGLNTIVFVGSAMLDFYAKLC----SFEEAR--NAFEDIQK 162
Query: 229 SNC-----LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
N LI Y K G I AL+LF+++ +N+VSW +++ GF+ G + AV F
Sbjct: 163 PNVVSYTTLIHGYLKKGKIDDALQLFQEMP--ERNVVSWNAMVGGFSQMGHNEEAVSLFI 220
Query: 284 RMQKVGLKPNRVTFLSVLNACSH 306
M + G PN+ TF + + ++
Sbjct: 221 EMLREGFMPNQSTFPCAITSAAN 243
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 222/445 (49%), Gaps = 80/445 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQL--QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+FNT+L YS++ PK+AF+++K L QQ+ + D F++ ++ C
Sbjct: 93 FMFNTMLRGYSISHHPKQAFVVFKGLRAQQM----------ILDQFSFIPTLKACARELA 142
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER-NLVTWNVMIT 142
G +H V+ + G V AL++ Y G + D+ +LFDE+P + +LV+WN ++
Sbjct: 143 YETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLG 202
Query: 143 GLVK----------WGEL---------------------EYARSLFEEMPCRNVVSWTGI 171
G ++ +GE+ + +F ++P ++VV W +
Sbjct: 203 GYLQVPHPTMVTCLFGEMCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCL 262
Query: 172 LDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+DGY + + + +P+ T++ +L A GA I Y E+
Sbjct: 263 IDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQI 322
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
A D + L+D Y KCG + A+ +FE + + K++ SWT++ISG+ +HG K A+
Sbjct: 323 -ALDAVLGTALVDMYCKCGFLEKAIDVFERMEI--KDVKSWTAMISGYGVHGQAKNAIMI 379
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
F RM+ G +PN VTFL+VLNACSHGG+ HYGC++D+LG
Sbjct: 380 FHRMEVEGYRPNEVTFLAVLNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLG 439
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
RAG LE+A + +P E D R LL AC +GNV++GE V R +LE+ + D +
Sbjct: 440 RAGLLEEAHNLIKSLPIE-GDATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSI 498
Query: 380 LMYNILAGVGRYVDAERLRRVMDER 404
L+ + A GR D R++ + +E+
Sbjct: 499 LLSSTYAIAGRLPDYTRMQEIKEEK 523
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLP 198
+ +YA S+F ++P N+ + +L GY+ + A + + + L
Sbjct: 76 DTDYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLK 135
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A + A Q IHG + G F V N L+ Y CG I A +LF++I + +
Sbjct: 136 ACARELAYETGQGIHGVVVRSGHGLF-TNVKNALLHFYCVCGRIGDAHQLFDEIP-PKID 193
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDML 318
LVSW +++ G+ F M + L N T L+DM
Sbjct: 194 LVSWNTLLGGYLQVPHPTMVTCLFGEMCRKDL--NVAT----------------ALIDMY 235
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILL 348
AG ++ KI +P + DVV+ L+
Sbjct: 236 ANAGFIDLGHKIFYQVPKK--DVVLWNCLI 263
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 207/405 (51%), Gaps = 56/405 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N L+ Y+ A +LY ++ LRP D+FT F+++ C LS
Sbjct: 114 FLWNVLIRGYAWNGPHDNAIILYHKMLDY------GLRP--DNFTLPFVLKACSALSAIG 165
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G +H + K G++ ++V AL++MY G + D+ ++FD++ R+ V WN M+
Sbjct: 166 EGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYA 225
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G + + SL EM V P+E T++ V+ +
Sbjct: 226 QNGHPDESISLCREMAANGV---------------------RPTEATLVTVISSSADVAC 264
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IHG+G + GF + D +V LID YAKCG + AL LFE + K +VSW +I
Sbjct: 265 LPYGREIHGFGWRHGFQSND-KVKTALIDMYAKCGSVKVALALFE--RLREKRVVSWNAI 321
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I+G+AMHG+ A++ F++M+K +P+ +TF+ VL ACS G L
Sbjct: 322 ITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYG 380
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C++D+LG G+L++A + + S D V LL +C HGNVE+ E
Sbjct: 381 ITPTVQHYTCMIDLLGHCGQLDEAYDLIRNM-SVKPDSGVWGALLNSCKIHGNVELAELA 439
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
K++E+E + G+YV++ N+ A G++ E+LR+VM ++ K
Sbjct: 440 LEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKK 484
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 181/410 (44%), Gaps = 73/410 (17%)
Query: 32 LHFYSLADSPKKAFL--LYKQLQQIY----THSHS-----PLRPLFDSFTYSFLIRTCVT 80
+ FYS+ + +F+ L+ Q Y TH + P +P + Y+ L+++C+
Sbjct: 1 MSFYSIKKTQHTSFIFNLFPFSQSFYHSLATHQTASVDSFPPQPT-THYGYTSLLQSCID 59
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
N G QLHA +G + + T LV++Y L ++ LFD++P++NL WNV+
Sbjct: 60 SKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVL 119
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
I G G + A L+ +M LD R P T+ VL A
Sbjct: 120 IRGYAWNGPHDNAIILYHKM-----------LDYGLR----------PDNFTLPFVLKAC 158
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
A+ + IH Y K G+ D+ V LID YAKCGC+ A ++F+ I V ++ V
Sbjct: 159 SALSAIGEGRSIHEYVIKSGWER-DLFVGAALIDMYAKCGCVMDAGRVFDKIVV--RDAV 215
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HG-G 308
W S+++ +A +G ++ M G++P T ++V+++ + HG G
Sbjct: 216 LWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFG 275
Query: 309 LHYG---------CLVDMLGRAGRLEQAEKIALGIPSEITD--VVVRRILLGACSFHGNV 357
+G L+DM + G + K+AL + + + VV ++ + HG
Sbjct: 276 WRHGFQSNDKVKTALIDMYAKCGSV----KVALALFERLREKRVVSWNAIITGYAMHGLA 331
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
+ K+ + +R D++ +LA R R++DE AL
Sbjct: 332 VGALDLFDKMRKEDR---PDHITFVGVLAACSR-------GRLLDEGRAL 371
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/490 (29%), Positives = 230/490 (46%), Gaps = 114/490 (23%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + SP A LL+K++ + D FT+S +++ C + G
Sbjct: 89 YNVMIRGLAFKRSPDNALLLFKKMHEKSVQH--------DKFTFSSVLKACSRMKALREG 140
Query: 88 TQLHAVISKVGFQS---------HVYVN----------------------TALVNMYVSL 116
Q+HA+I K GF+S +Y N ++++ Y
Sbjct: 141 EQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKN 200
Query: 117 GFLKDSSKLFDELPE-----------------------------------RNLVTWNVMI 141
G + KLF ++ E + L N +
Sbjct: 201 GLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLT 260
Query: 142 TGLV----KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STE 187
T L+ K G+++ AR LF+EM R+VV+W+ ++ GY + +R A +
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY 320
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P+E+T+++VL + GA + +H Y +K+ + + LID YAKCG I +++
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMK-LTVTLGTQLIDFYAKCGYIDRSVE 379
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+F+++S KN+ +WT++I G A +G GK A+E F M + +KPN VTF+ VL+ACSH
Sbjct: 380 VFKEMSF--KNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHA 437
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
L HYGC+VD+LGRAG LE+A + +P + VV R
Sbjct: 438 CLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFP-PNAVVWR 496
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL +C H N+EM E+ + +E + GDY+L+ N A VGR DA R+R ++ E+
Sbjct: 497 TLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKE 556
Query: 406 ALKFPGRSLV 415
K PG SL+
Sbjct: 557 IKKIPGCSLI 566
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 45/227 (19%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+F+ + + +NVMI GL + A LF++M +
Sbjct: 77 IFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKM---------------------HEK 115
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
S + + T +VL A + A+R + +H K GF + + V N LI YA CG I
Sbjct: 116 SVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEF-VENTLIQMYANCGQIGV 174
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A +F+ + +++V+W S++SG+ +G+ V+ F ++ ++ ++ + VT +SVL AC
Sbjct: 175 ARHVFD--GMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMAC 232
Query: 305 SH-GGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
L G L+DM + G+++ A K+
Sbjct: 233 GRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKL 279
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 195/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG LH K+G + SHV V TA++ MY G L+ + +FD + ++N VTWN MI G
Sbjct: 76 LGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGY 135
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G+++ A +F++MP R+++SWT ++ G+ + A P + I+
Sbjct: 136 MRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAII 195
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+ + A GA+ +H Y + F ++RVSN LID Y +CGC+ A ++F+ +
Sbjct: 196 SAVAACTNLGALSFGLWVHRYVLSQDFRN-NVRVSNSLIDLYCRCGCVEFARQVFD--KM 252
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G P+ VTF L ACSH GL
Sbjct: 253 EKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGF 312
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE A + +P + +VV+ LL AC
Sbjct: 313 QYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGS-LLAACR 371
Query: 353 FHGN-VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HGN + ER+ + + +++ + +YV++ N+ A G++ A ++RR M K PG
Sbjct: 372 NHGNHTILAERLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPG 431
Query: 412 RSLV 415
S +
Sbjct: 432 YSSI 435
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 110/267 (41%), Gaps = 58/267 (21%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L + G +H + F+++V V+ +L+++Y G ++ + ++FD++ +R +
Sbjct: 198 VAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 257
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN +I G G + F +M +G+T P +T
Sbjct: 258 VSWNSVIVGFAANGNANESLVYFRKMQ----------REGFT-----------PDGVTFT 296
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-----DIRVS------NCLIDTYAKCGCIF 243
L A G V + GF F D R+S CL+D Y++ G +
Sbjct: 297 GALTACSHVGLV-----------EEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLE 345
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A + E + + + N V S+++ HG ER+ K +++ L+
Sbjct: 346 DAFIVVESMPM-KPNEVVIGSLLAACRNHGNHTILA---ERLMK---------YITDLDV 392
Query: 304 CSHGGLHYGCLVDMLGRAGRLEQAEKI 330
SH +Y L +M G+ E A K+
Sbjct: 393 KSHS--NYVILSNMYAADGKWEGASKM 417
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
+ +VSWTS I+ + G AV F M+ G++PN +TF+++L+AC
Sbjct: 19 ETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSAC 66
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 210/423 (49%), Gaps = 68/423 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L++ Y +KA +YK ++ ++P D T L+ +C L N G
Sbjct: 150 WNCLINGYKKIGEGEKAIEVYKVMES------EGVKP--DDVTMIGLVSSCAMLGDLNRG 201
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS-------------SKLFDELPERNL 134
+ + + G + + + AL++M+ G + ++ SKLFD++ E+++
Sbjct: 202 KEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDV 261
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V WN MI G V+ + A +LF+EM N T+P EIT++
Sbjct: 262 VMWNAMIGGSVQAKRSQDALALFQEMQTSN---------------------TDPDEITMI 300
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A Q GA+ IH Y EK + ++ + L+D YAKCG I AL +F I
Sbjct: 301 HCLSACSQLGALDVGIWIHRYIEKHSL-SLNVALGTSLVDMYAKCGNISEALCVFHGI-- 357
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+ +N +++T+II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+
Sbjct: 358 QTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGR 417
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HY +VD+LGRAG LE+A+K+ +P E D V LL C
Sbjct: 418 DYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPME-ADAAVWGALLFGCR 476
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNV++GE+ +K+LE++ + G YVL+ + + DA+R RR+M+ER K PG
Sbjct: 477 MHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGC 536
Query: 413 SLV 415
S +
Sbjct: 537 SSI 539
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 164/362 (45%), Gaps = 61/362 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + +S +++PK A L YKQ+ + P D FTY L + C L +LG
Sbjct: 46 WNVTIRGFSESENPKDAVLAYKQMLRRGCCESRP-----DHFTYPVLFKVCADLRLNSLG 100
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + K+ + +V+ A ++M+ S G ++++ K+FDE P R+LV+WN +I G K
Sbjct: 101 HMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKI 160
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE E A +++ M V +P ++T++ ++ + G +
Sbjct: 161 GEGEKAIEVYKVMESEGV---------------------KPDDVTMIGLVSSCAMLGDLN 199
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI-----------SVER 256
+ + Y + G I ++N L+D ++KCG I A ++F+++ +E
Sbjct: 200 RGKEFYEYVKANGLR-MTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEE 258
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--- 312
K++V W ++I G + A+ F+ MQ P+ +T + L+ACS G L G
Sbjct: 259 KDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWI 318
Query: 313 -----------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
LVDM + G + +A + GI + + + ++G + HG
Sbjct: 319 HRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGI--QTRNSLTYTAIIGGLALHG 376
Query: 356 NV 357
+
Sbjct: 377 DA 378
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/518 (27%), Positives = 226/518 (43%), Gaps = 141/518 (27%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ YS P++A LL+ + + D F+ S +++ C L +
Sbjct: 68 LWNAVIKSYSHGIDPRRALLLFCLMIENGV--------CVDKFSLSLVLKACSRLEFLKE 119
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNM-------------------------------YVS 115
G Q+H + K G S +++ L+ + YV
Sbjct: 120 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK 179
Query: 116 LGFLKDSSKLFD----------------------------------ELPERNLVTWNVMI 141
G +K + KLFD E+PE++L++WN MI
Sbjct: 180 CGLMKSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMI 239
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST--------------- 186
G VK G +E A+ LF+ MP R+VV+W ++DGY ++ + A +
Sbjct: 240 NGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNS 299
Query: 187 ---------------------------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
P E T++ VL AI Q G + +H Y ++
Sbjct: 300 MMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEK 359
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
F ++ LID ++KCG I A+ +FE I E K++ W ++I G A+HG+G+ A
Sbjct: 360 RF-PLGGKLGVALIDMHSKCGSIQHAISVFEGI--ENKSIDHWNAMIGGLAIHGLGELAF 416
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDM 317
+ ++++ ++P+ +TF+ VLNACSH GL HYGCLVD+
Sbjct: 417 DMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDV 476
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
L R+G +E A+ + +P E DV+ R L ACS H E GE V + ++ N
Sbjct: 477 LSRSGSIELAKHLIEDMPMEPNDVIWRS-FLSACSTHEEFETGELVAKHLILQAGYNPSS 535
Query: 378 YVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVL+ N+ A +G + D R+R +M +R K PG S +
Sbjct: 536 YVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWI 573
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/392 (34%), Positives = 205/392 (52%), Gaps = 51/392 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T + + C +LS G Q+HA V+ +++ + + ALV+MY + ++ +
Sbjct: 251 DEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLV 310
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD +P R++V+ M++G K ++ AR +F M RNVVSW ++ GYT+ NG +
Sbjct: 311 FDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQ----NGEN 366
Query: 186 TEPSEITILAVLPAIWQN----GAVRN-CQ---------------LIHGYGEKRGFNAFD 225
E + +L +IW G + N C L HG+ K G ++ D
Sbjct: 367 EEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDS-D 425
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
I V N LID Y KCG + +FE + +ER N VSW ++I G+A +G G A+E F M
Sbjct: 426 IFVGNSLIDMYMKCGLVEDGRLVFERM-LERDN-VSWNAMIVGYAQNGYGTEALEIFREM 483
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGR 323
G +P+ VT + VL+ACSH GL HY C+VD+LGRAG
Sbjct: 484 LVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGC 543
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383
L++A + +P E D VV LL AC HGN+ +G+ V ++LE++ N G YVL+ N
Sbjct: 544 LDEANNLIQTMPME-PDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSN 602
Query: 384 ILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ A +GR+ D R+R+ M + +K PG S +
Sbjct: 603 MYAELGRWKDVVRVRKQMRQMGVIKQPGCSWI 634
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 135/251 (53%), Gaps = 13/251 (5%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
DS ++ L+ TCV +HA I K F S +++ LV++Y GFL+D+ K
Sbjct: 16 FLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARK 75
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD + +RN +WN ++ L K+G L+ A +LF+ MP R+ SW ++ G+ + +R A
Sbjct: 76 VFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEA 135
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLID 234
+E + + A+ + + + IHG K + + D+ + + L+D
Sbjct: 136 LRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRY-SLDVYMGSALVD 194
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y+KC + SA + F+D+ V +N+VSW S+I+ + +G A+E F RM G++P+
Sbjct: 195 MYSKCRVVASAQRAFDDMDV--RNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDE 252
Query: 295 VTFLSVLNACS 305
+T SV +AC+
Sbjct: 253 ITLASVASACA 263
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 146/339 (43%), Gaps = 62/339 (18%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
+ + +++ + C L ++G Q+H +I+K + VY+ +ALV+MY + + +
Sbjct: 148 VLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQR 207
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
FD++ RN+V+WN +IT + G A +F M MN
Sbjct: 208 AFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRM-----------------MN----C 246
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP EIT+ +V A A+R IH K D+ + N L+D YAKC +
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNE 306
Query: 245 ALKLFE-----DISVE------------------------RKNLVSWTSIISGFAMHGMG 275
A +F+ D+ E +N+VSW ++I+G+ +G
Sbjct: 307 ARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGEN 366
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI- 334
+ AV F +++ + P TF ++LNAC++ L D+ + GR + G
Sbjct: 367 EEAVRLFLLLKRESIWPTHYTFGNLLNACAN-------LADL--KLGRQAHTHILKHGFW 417
Query: 335 --PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
E +D+ V L+ G VE G V ++LE +
Sbjct: 418 FKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERD 456
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 133/373 (35%), Positives = 206/373 (55%), Gaps = 25/373 (6%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNL--GTQLHAVISKVGFQS-HVYVNTALVNMYVSLGF 118
+RP + T+ L+ C L G +HA + K+G + +V V TALV+MY G
Sbjct: 85 VRP--NHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQ 142
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR- 177
L + +FDE+ RN V+WN MI G ++ GE+ A LF++M R+ +SWT ++ G+ +
Sbjct: 143 LDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKK 202
Query: 178 ---------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
A EP +TI++VL A GA+ I+ + K+ F +I++
Sbjct: 203 GCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKD-NIKI 261
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK- 287
SN LID Y++CGCI A ++FE + +++LVSW S+I GFA++G + A+E F M+K
Sbjct: 262 SNSLIDMYSRCGCIRLARQVFEQMP--KRSLVSWNSMIVGFALNGHAEEALEFFNLMRKE 319
Query: 288 --VGLKPNRVTFLSVLN---ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
GL + F ++ S HYGCLVD+ RAGRLE A + +P + +VV
Sbjct: 320 GHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVV 379
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
+ LL AC HG+V + ER+ + + E++ G+ +YVL+ NI A VGR+ A ++R+ M
Sbjct: 380 LGS-LLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMK 438
Query: 403 ERNALKFPGRSLV 415
K PG S +
Sbjct: 439 ALGIHKKPGFSSI 451
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 62/237 (26%)
Query: 161 PCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAI--WQNGAVRN 208
P +VSWT + + R +R A P+ IT L +L A + +R
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV-------------- 254
IH Y K G + ++ V L+D Y+KCG + A +F+++ V
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 255 ---------------ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
++ +SWTS+I GF G + A+E F MQ G++P+ VT +S
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 300 VLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
VL AC++ G L G L+DM R G + A ++ +P
Sbjct: 230 VLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP 286
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/487 (29%), Positives = 220/487 (45%), Gaps = 108/487 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL-RPLFDSFTYSFLIRTCVTLSY 83
T L+N L+ YS FL ++ + + + L RP D +T+ +++ C
Sbjct: 74 TYLWNHLIKGYS------NKFLFFETVSILMRMMRTGLARP--DEYTFPLVMKVCSNNGQ 125
Query: 84 PNLGTQLHAVISKVGFQSHVYVNT-------------------------------ALVNM 112
+G+ +H ++ ++GF V V T ALV
Sbjct: 126 VRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVA 185
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
YV G L+++ +FD +PERNL +WN ++ GLVK G+L A+ LF+EMP R+++S+T ++
Sbjct: 186 YVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMI 245
Query: 173 DGYTRMNR---------------------------SNGASTE--------------PSEI 191
DGY + NG E P E
Sbjct: 246 DGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEF 305
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR-VSNCLIDTYAKCGCIFSALKLFE 250
++ ++ A Q G C+ + Y +R N F V LID AKCG + A KLFE
Sbjct: 306 IMVGLMSACSQMGCFELCEKVDSYLHQR-MNKFSSHYVVPALIDMNAKCGHMDRAAKLFE 364
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ +++LVS+ S++ G A+HG G A+ FE+M G+ P+ V F +L C L
Sbjct: 365 EMP--QRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLV 422
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HY C+V++L R G+L++A ++ +P E LL
Sbjct: 423 EEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE-AHASAWGSLL 481
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
G CS HGN E+ E V R + E+E + G YVL+ NI A + R+ D LR M+E K
Sbjct: 482 GGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITK 541
Query: 409 FPGRSLV 415
GRS +
Sbjct: 542 ICGRSWI 548
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 44/232 (18%)
Query: 156 LFEEMPCRNVVSWTGILDGYT-------------RMNRSNGASTEPSEITILAVLPAIWQ 202
+FE +P W ++ GY+ RM R+ A P E T V+
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLA--RPDEYTFPLVMKVCSN 122
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
NG VR +HG + GF+ D+ V +D Y KC +FSA K+F ++ +N VSW
Sbjct: 123 NGQVRVGSSVHGLVLRIGFDK-DVVVGTSFVDFYGKCKDLFSARKVFGEMP--ERNAVSW 179
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG 322
T+++ + G + A F+ M + L + LVD L ++G
Sbjct: 180 TALVVAYVKSGELEEAKSMFDLMPERNLGS------------------WNALVDGLVKSG 221
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT-RKVLEMERG 373
L A+K+ +P R I+ G + G+ V+ R + E RG
Sbjct: 222 DLVNAKKLFDEMPK-------RDIISYTSMIDGYAKGGDMVSARDLFEEARG 266
>gi|297834808|ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331126|gb|EFH61545.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 471
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 173/318 (54%), Gaps = 50/318 (15%)
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGY-TRMNRSN----------------GASTE 187
K G+L YAR +F+EMP R V+W ++ GY + ++ N G+
Sbjct: 157 AKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMILFRRFSCCGSGVR 216
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSAL 246
P++ T++ VLPAI Q G + L+HGY EK GF D+ + L+D Y+KCGC+ SA
Sbjct: 217 PTDTTMVCVLPAISQTGLIEIGSLVHGYIEKLGFTPEIDVFIGTGLVDMYSKCGCLNSAF 276
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+FE + V KN+ +WTS+ +G A+HG G +RM + G+KPN VTF S+L+A H
Sbjct: 277 SVFELMKV--KNVFTWTSMATGLALHGRGNETPNLLDRMAESGIKPNEVTFTSLLSAYRH 334
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HYGC+VD+LG+AGR+++A + L +P + D ++
Sbjct: 335 IGLVQEGIELFKSMRTRFGVTPVIQHYGCIVDLLGKAGRIQEAYEFVLAMPIK-PDTILL 393
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMER-------GNGGDYVLMYNILAGVGRYVDAERL 397
R L ACS +G MGE + + +LE+ER DYV + N+LA G++++ E+L
Sbjct: 394 RSLCNACSIYGETAMGEEIGKALLEIEREEEKLSGSECEDYVALSNMLAHKGKWIEVEKL 453
Query: 398 RRVMDERNALKFPGRSLV 415
R M ER PG S V
Sbjct: 454 RNEMKERRIKTRPGFSFV 471
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 218/413 (52%), Gaps = 72/413 (17%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T ++NT++ YS + P++A LLY + +Y HS +++T+ FL++ C ++S
Sbjct: 83 TFMWNTMIRGYSNSKEPEEALLLYHHM--LY---HSVPH---NAYTFPFLLKACSSMSAL 134
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
Q+HA I K+GF S +Y +L+N+Y
Sbjct: 135 EETQQIHAHIIKMGFGSEIYTTNSLLNVYS------------------------------ 164
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
K G+++ AR LF+++ R+ T L+ + RM A + + +++ L A G
Sbjct: 165 -KSGDIKSARLLFDQVDQRD----TEALNLFHRMQT---AGIKLDNVALVSTLQACADLG 216
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + IH Y +K D + LID YAKCG + A+++F + E K + WT+
Sbjct: 217 VLDQGKWIHAYIKKHEIE-IDPILGCVLIDMYAKCGDLEEAIEVFRKM--EEKGVSVWTA 273
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+ISG+A+HG G+ A+E F +MQ G++PN++TF +L ACSH GL
Sbjct: 274 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 333
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+VD+LGRAG L++AE++ +P + + + LL AC HGN+E+G++
Sbjct: 334 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK-PNAAIWGALLNACHIHGNLELGKQ 392
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + +++++ G+GG Y+ + +I A G + A R+RR M E+ K PG S++
Sbjct: 393 IGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVI 445
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 92/232 (39%), Gaps = 62/232 (26%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G L + +FD + N WN MI G E E A L+ M +V
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSV----------- 114
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ A T P +L A A+ Q IH + K GF + +I +N L++ Y
Sbjct: 115 ----PHNAYTFP------FLLKACSSMSALEETQQIHAHIIKMGFGS-EIYTTNSLLNVY 163
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+K G I SA LF+ V++++ A+ F RMQ G+K + V
Sbjct: 164 SKSGDIKSARLLFD--QVDQRD-----------------TEALNLFHRMQTAGIKLDNVA 204
Query: 297 FLSVLNACSHGG-------LH-------------YGC-LVDMLGRAGRLEQA 327
+S L AC+ G +H GC L+DM + G LE+A
Sbjct: 205 LVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEA 256
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 216/408 (52%), Gaps = 44/408 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N++++ Y+ A + ++A L++ +++ L D FT L+ C G
Sbjct: 179 WNSMINGYAQAGNTREACSLFEGMRRQGL--------LADEFTLVSLLFACSAEGNLEFG 230
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+ + G + + + ALV+MY G L + FD +P +N V+W M+ L K
Sbjct: 231 KLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKR 290
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVL 197
++ AR FE++P ++++SW ++ Y + NR P E T+ AVL
Sbjct: 291 ASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVL 350
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q G + + ++IH + F+ + + N L+D YA+CG + +A+ LF ++ K
Sbjct: 351 SACGQLGDLASGKMIHDC-IRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP--SK 407
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N++SW +II AMHG + A+ F M P+ +TF+++L+AC+HGGL
Sbjct: 408 NVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYF 467
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+LGR G+L +A + +P DVVV LLGAC HG
Sbjct: 468 QAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMR-PDVVVWGALLGACRIHG 526
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
++++G++V +++LE+E +GG +VL+ N+L ++ D +RLR++M E
Sbjct: 527 HIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMRE 574
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 165/380 (43%), Gaps = 86/380 (22%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLR--PLF----------DSFTYSFLIRTCVTLSYPNLGT 88
P +Y L + Y +SH P PL + FT FL++ C +
Sbjct: 71 PDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVM 130
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
H V+ K+GF V+V AL++ Y S G L DS + FDE+ +RN+V+WN MI G + G
Sbjct: 131 VTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAG 190
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
A SLFE M + +++ E T++++L A G +
Sbjct: 191 NTREACSLFEGMRRQGLLA---------------------DEFTLVSLLFACSAEGNLEF 229
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI---------------- 252
+L+H + RG D+ ++N L+D Y KCG + A F+ +
Sbjct: 230 GKLVHSHLLVRGCR-IDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288
Query: 253 -------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
+ K+++SW ++IS + G A++ + RM+ +GL P+ T +
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348
Query: 300 VLNACSH------GGLHYGC---------------LVDMLGRAGRLEQAEKIALGIPSEI 338
VL+AC G + + C L+DM R G+++ A + +PS+
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK- 407
Query: 339 TDVVVRRILLGACSFHGNVE 358
+V+ ++GA + HG +
Sbjct: 408 -NVISWNAIIGALAMHGRAQ 426
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 221/462 (47%), Gaps = 91/462 (19%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQLQQIYTHS 58
+IH+ + T + + + NTL+ YS+ S P + + + L Q +T +
Sbjct: 131 QIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKA 190
Query: 59 ------------HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK-VGFQSHVYV 105
LR D T ++ C L NLG ++H+ I + ++ V+V
Sbjct: 191 GLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFV 250
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
AL++MY+ K +L A +F+EMP +NV
Sbjct: 251 GNALLDMYL-------------------------------KCDDLNSAYKVFDEMPVKNV 279
Query: 166 VSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
V+W ++ G R A +P E+T++ VL + G + + +H Y
Sbjct: 280 VTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAY 339
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
+ A D V N L+D YAKCG I A ++FE S++R+++ S+T++I G A+HG
Sbjct: 340 MRRNHILA-DKFVGNALLDMYAKCGSIDEAFRVFE--SMKRRDVYSYTAMIFGLALHGEA 396
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
A + F M +VG++PN VTFL +L ACSHGGL HYGC
Sbjct: 397 NWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGC 456
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
++D+LGRAG +++AE+I + DV LLGAC HGNV++GE V +K+ E++
Sbjct: 457 MIDLLGRAGLVKEAEEIIHKMEIR-PDVFACGALLGACRIHGNVDIGESVMQKLTELDPD 515
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G Y+LM N+ + V R+ DA ++R+ M + K PG SL+
Sbjct: 516 EEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLI 557
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 39/259 (15%)
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
EP TI VL A+ +R Q IH K G F++ VSN L+ Y+ CG I
Sbjct: 107 EPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ 166
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K+F++ ++LVSWT++I F G+ AVE F M + L+ + T + VL+ACS+
Sbjct: 167 KVFDE--CPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSN 224
Query: 307 -GGLHYG---------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
G L+ G L+DM + L A K+ +P + +VV
Sbjct: 225 LGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMP--VKNVVTW 282
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG--------VGRYVDAER 396
++ ++ G R + ++G D V + +L +G++V A
Sbjct: 283 NAMISGLAYQGRYREALDTFR--MMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHA-Y 339
Query: 397 LRRVMDERNALKFPGRSLV 415
+RR + A KF G +L+
Sbjct: 340 MRR--NHILADKFVGNALL 356
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 222/487 (45%), Gaps = 108/487 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL-RPLFDSFTYSFLIRTCVTLSY 83
T L+N L+ YS FL ++ + + + RP D +T+ +++ C +
Sbjct: 71 TYLWNHLIKGYS------NKFLFFETVSLLMRMMRTGFARP--DEYTFPLVMKVCSNNAE 122
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMY------------------------------ 113
+G+ +H ++ ++GF V + T+ V+ Y
Sbjct: 123 FRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVA 182
Query: 114 -VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
V G L+++ ++FD +PERNL TWN ++ GLVK G+L AR LF+EMP R+++S+T ++
Sbjct: 183 YVKSGELEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMI 242
Query: 173 DGYTRMNR---------------------------SNGASTE--------------PSEI 191
DGY + NG E P E
Sbjct: 243 DGYAKGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEF 302
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR-VSNCLIDTYAKCGCIFSALKLFE 250
++ ++ A Q G C+ + Y + N F V LID AKCG + A KLFE
Sbjct: 303 IMVGLMSACSQMGCFELCEKVDSYLHQ-SMNKFSSHYVIPALIDMNAKCGHMDRAAKLFE 361
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ +++LVS+ S++ G A+HG G AV FE+M G+ P+ V F +L CS L
Sbjct: 362 EMP--QRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLV 419
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HY C+V++L R G+L++A ++ +P E LL
Sbjct: 420 EEGLRYFELMRKEYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE-AHASAWGSLL 478
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
G CS HGN E+ E V R++ E+E + G YVL+ NI A + R+ D LR M+E K
Sbjct: 479 GGCSLHGNTEIAEVVARQLFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKK 538
Query: 409 FPGRSLV 415
GRS +
Sbjct: 539 ICGRSWI 545
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 44/232 (18%)
Query: 156 LFEEMPCRNVVSWTGILDGYT-------------RMNRSNGASTEPSEITILAVLPAIWQ 202
+FE +P W ++ GY+ RM R+ A P E T V+
Sbjct: 62 VFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFA--RPDEYTFPLVMKVCSN 119
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
N R +HG + GF+ D+ + +D Y KC + SA K+F ++ +N+VSW
Sbjct: 120 NAEFRVGSTVHGLVLRIGFDK-DVVLGTSFVDFYGKCKDLCSARKVFGEMP--ERNVVSW 176
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG 322
T++I + G + A F+ M P R L NA LVD L ++G
Sbjct: 177 TALIVAYVKSGELEEAKRMFDLM------PERN--LGTWNA----------LVDGLVKSG 218
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT-RKVLEMERG 373
L A K+ +P R I+ G + G+ V+ R + E RG
Sbjct: 219 DLVNARKLFDEMPK-------RDIISYTSMIDGYAKGGDMVSARDLFENARG 263
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 191/343 (55%), Gaps = 41/343 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++++ YV G ++D+ LFD +P R++VTW+ MI G K G + A++LF++MP R+VVS
Sbjct: 261 SMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVS 320
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + NR N + E P E T++ VL AI Q G + +H Y
Sbjct: 321 YNSMIAGYVQ-NRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 379
Query: 216 -GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
EK+ F + V+ LID Y+KCG I A+ +F+ I E K++ W ++I G A+HG+
Sbjct: 380 IVEKQFFLGGKLGVA--LIDMYSKCGSIQHAMLVFKGI--ENKSIDHWNAMIGGLAIHGL 435
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G++A + ++++ +KP+ +TF+ +LNACSH GL HYG
Sbjct: 436 GESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 495
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+VD+L R+G +E A+ + +P E D V+ R L AC+ H E GE V + ++
Sbjct: 496 CMVDILSRSGSIELAKNLIEEMPIEPND-VIWRTFLAACNHHKEFETGELVAKHLIWEAG 554
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G++ D R+R +M ER K PG S +
Sbjct: 555 YNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWI 597
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 180/377 (47%), Gaps = 51/377 (13%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ +S P++A LL+ + + D F+ S +++ C L
Sbjct: 92 LWNAVIKSHSHGTDPRRALLLFCLMLENGVS--------VDKFSLSLVLKACSRLGLVKE 143
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+H + K G S +++ L+ +Y+ G+L + ++FD +P+R+ V++N MI G VK
Sbjct: 144 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVK 203
Query: 147 WGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNR-----SNGASTEPSE--ITILAVL 197
G E AR LF+ MP +N++SW ++ GY + + S S P + I+ +++
Sbjct: 204 CGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMI 263
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
++G + + + + +R D+ + +ID YAK G + A LF+ + +
Sbjct: 264 DGYVKHGRIEDAKYLFDVMPRR-----DVVTWSTMIDGYAKLGFVHQAKTLFDQMP--HR 316
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH---------- 306
++VS+ S+I+G+ + A+E F M+K L P+ T + VL+A +
Sbjct: 317 DVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDM 376
Query: 307 -----------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
GG L+DM + G ++ A + GI ++ D ++G + HG
Sbjct: 377 HLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSID--HWNAMIGGLAIHG 434
Query: 356 NVEMGERVTRKVLEMER 372
+GE +L++ER
Sbjct: 435 ---LGESAFDMLLQIER 448
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 29/247 (11%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
S L P D T ++ L + +H I + F + AL++MY G +
Sbjct: 348 SHLSP--DETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSI 405
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ + +F + +++ WN MI GL G E A + ++ R++
Sbjct: 406 QHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSI-------------- 451
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+P +IT + +L A +G V+ L ++ ++ C++D ++
Sbjct: 452 -------KPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRS 504
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQKVGLKPNRVT 296
G I A L E++ +E N V W + ++ H G+ ++ + + G P+
Sbjct: 505 GSIELAKNLIEEMPIE-PNDVIWRTFLAACNHHKEFETGELVAKHL--IWEAGYNPSSYV 561
Query: 297 FLSVLNA 303
LS L A
Sbjct: 562 LLSNLYA 568
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 205/381 (53%), Gaps = 36/381 (9%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D + ++ C + + G +H+ + + ++++AL+N+Y S ++ + K
Sbjct: 168 LSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEK 227
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
L++ +P ++LV+ M+ G + + E AR +F+ MP ++VVSW+ ++ GY N+ N A
Sbjct: 228 LYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEA 287
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
P E+T+L+V+ A G++ + IH + + G N + + N LID
Sbjct: 288 LSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKI-LHICNALID 346
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
+AKCG I AL +F ++ +KN+++WTS+I+ FAMHG GK+A+ FE+M+ G++PN
Sbjct: 347 MFAKCGGINLALNIFNEMP--QKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNE 404
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTFL++L AC H GL HYGC+VD+LGRA +++A +
Sbjct: 405 VTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIE 464
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+ +V V LL AC HG++++G +K+L+++ + G VL+ I
Sbjct: 465 SMHLR-PNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLN 523
Query: 393 DAERLRRVMDERNALKFPGRS 413
DA+ +R VM + K G S
Sbjct: 524 DAQEVRDVMKLQGVSKETGLS 544
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 36/297 (12%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT-------- 142
HA+ +VG +V TALV Y + G + D+ K+FD + R++V+W VM+
Sbjct: 93 HALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNY 152
Query: 143 --GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
L+++ +++ + L +++ V+S G + + R +S + S+I I A L +
Sbjct: 153 KEALLQFAKMKNSGVLSDQLILATVLSACGHIR-HLRTGKSIHSYMLVSDILINAHLSSA 211
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
N + G D+ S ++ YA+ A +F+ + K++V
Sbjct: 212 LINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFD--GMPEKDVV 269
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG------------ 308
SW+++ISG+A A+ F MQ+ G++P+ VT LSV++AC++ G
Sbjct: 270 SWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFI 329
Query: 309 --------LHY-GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
LH L+DM + G + A I +P + +V+ ++ A + HG+
Sbjct: 330 KNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQK--NVITWTSMITAFAMHGD 384
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/481 (28%), Positives = 234/481 (48%), Gaps = 90/481 (18%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFT 70
+++ + ++ + + + NT++ Y+ + P KA LY + + S D FT
Sbjct: 163 VYAQAIFEDTAMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKS--------DHFT 214
Query: 71 YSFLIRTCVTLSYPN-------------LGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
Y F ++ C + + N G ++H + ++G ++ +LV +Y G
Sbjct: 215 YPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCG 274
Query: 118 FLKDSSKLFDELPERNLVTWNVMITG---------------------LVKW--------- 147
FL + +FDE+ E+ + +WNVMI+ +V W
Sbjct: 275 FLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIR 334
Query: 148 -GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAV 196
G++E A+ +F+EMP R+ VSW ++ GY ++ A+ E ++IT+++V
Sbjct: 335 LGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISV 394
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A + GA+ + IH ++R + + +SN L+D YAKCG + A ++F ++ +
Sbjct: 395 LGACAETGALEIGRKIHLSLKQREYK-IEGYLSNALVDMYAKCGHLNLAWEVFSELKM-- 451
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNACSHGGL----- 309
K++ W ++I A+HG + A+ F M+ G +PNRVTF+ VL ACSH GL
Sbjct: 452 KHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGR 511
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+L R G L++A + +P E + V+ R LLGAC
Sbjct: 512 TFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFE-ANSVLWRTLLGACR 570
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H +V++ E +++ +ME GDYVL+ NI A R+ D ER+R M K PG
Sbjct: 571 VHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPKKPGS 630
Query: 413 S 413
S
Sbjct: 631 S 631
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 184/341 (53%), Gaps = 37/341 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++++ YV G ++D+ LFD +P R+++TW MI G K G + A++LF+++P R+VV+
Sbjct: 241 SMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVA 300
Query: 168 WTGILDGYTR-----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
+ ++ GY + + + P E T++ VL AI Q G + +H Y
Sbjct: 301 YNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYI 360
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
K+ F ++ LID Y+KCG I A+ +F+ +E KN+ W +II G A+HG+G
Sbjct: 361 VKKQF-FIGGKLGVALIDMYSKCGSIQHAMLVFK--GLENKNIDHWNAIIGGLAIHGLGG 417
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A + +++++ +KP+ +TF+ VLNACSH GL HYGC+
Sbjct: 418 PAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 477
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+L R+G +E A+ + +P E D V+ R L ACS H EMGE V + ++ N
Sbjct: 478 VDILSRSGSIELAKILIEKMPIEPND-VIWRTFLTACSHHKEFEMGELVAKHLILQAGYN 536
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVL+ N+ A G + D R+R +M ER K PG S +
Sbjct: 537 PSSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWI 577
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 182/383 (47%), Gaps = 55/383 (14%)
Query: 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF------------DSFTYSFLIRTCVT 80
H YSL + L+ + + ++H P R LF D F+ S +++ C
Sbjct: 58 HVYSLPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSR 117
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L + G +H + K G S +++ L+ +Y+ G L S ++FD +P+R+ V++N M
Sbjct: 118 LGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSM 177
Query: 141 ITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRS-NGASTEPSE------I 191
I G VK G +E AR LF+ MP +N++SW ++ GY + + N AS SE I
Sbjct: 178 IDGYVKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLI 237
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+ +++ ++G + + + + +R D+ +ID YAK G I A LF+
Sbjct: 238 SWNSMIDGYVKHGRIEDAKDLFDVMPRR-----DVITWATMIDGYAKLGFIHQAKTLFDQ 292
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGG-- 308
I +++V++ S+++G+ + A+E F +M+K L P+ T + VL+A + G
Sbjct: 293 IP--HRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRL 350
Query: 309 -----LHYG--------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
+H+ L+DM + G ++ A + G+ ++ D ++G
Sbjct: 351 SKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNID--HWNAIIG 408
Query: 350 ACSFHGNVEMGERVTRKVLEMER 372
+ HG +G +L++ER
Sbjct: 409 GLAIHG---LGGPAFDMLLQIER 428
>gi|15218823|ref|NP_171850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180302|sp|Q9LR72.1|PPR7_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g03510
gi|9280666|gb|AAF86535.1|AC002560_28 F21B7.13 [Arabidopsis thaliana]
gi|332189459|gb|AEE27580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 429
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 202/400 (50%), Gaps = 38/400 (9%)
Query: 48 YKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
++Q ++ HS D+ +S +++C P LG +HA K F S+ +V
Sbjct: 28 HEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAHSVKSNFLSNPFVGC 87
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVV 166
AL++MY + + KLFDE+P+RN V WN MI+ G+++ A L+E M N
Sbjct: 88 ALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNES 147
Query: 167 SWTGILDGYTRMNRSNGASTE-----------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
S+ I+ G + + E P+ IT+LA++ A GA R + IH Y
Sbjct: 148 SFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSACSAIGAFRLIKEIHSY 207
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
R ++ + L++ Y +CG I +F+ S+E +++V+W+S+IS +A+HG
Sbjct: 208 A-FRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFD--SMEDRDVVAWSSLISAYALHGDA 264
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A++ F+ M+ + P+ + FL+VL ACSH GL HY C
Sbjct: 265 ESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKDHYSC 324
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
LVD+L R GR E+A K+ +P + T LLGAC +G +E+ E R++L +E
Sbjct: 325 LVDVLSRVGRFEEAYKVIQAMPEKPT-AKTWGALLGACRNYGEIELAEIAARELLMVEPE 383
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
N +YVL+ I VGR +AERLR M E PG S
Sbjct: 384 NPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423
>gi|414865038|tpg|DAA43595.1| TPA: hypothetical protein ZEAMMB73_741081 [Zea mays]
Length = 400
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 212/388 (54%), Gaps = 47/388 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLG--TQLHAVISKVGF----QSHVYVNTALVNMYVSLGFLK 120
D+FT++F+++ + L + G + LHA K G H +V+ AL++ Y S +
Sbjct: 11 DAFTFTFVLKVLLPLPFALFGYLSDLHAQAFKHGCLGAGSEHGHVHNALLHAYASRSAVD 70
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+S++FDE+P R++V+++ ++T +K L+ R +F++MP R+VVSWT ++ Y R R
Sbjct: 71 DASRVFDEMPVRDVVSFSGLLTAHLKNNHLDSVRMVFDQMPHRDVVSWTAMISAYARAWR 130
Query: 181 SNGA-------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
A + +P E+T+++V+ A G + + + Y + GF + + + N L+
Sbjct: 131 PQEALALFDAMTVQPDEVTMVSVVSACTALGDLETGERLRQYVDSNGF-GWMVSLRNALM 189
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM--QKVGLK 291
D YAKCGC+ A LF+ +++ ++L SW ++IS +A HG + + F M +K
Sbjct: 190 DMYAKCGCLTEARVLFDGMAI--RSLASWNTLISAYASHGDVENTLALFHMMLADDNYVK 247
Query: 292 PNRVTFLSVLNACSHGGL------------------------HYGCLVDMLGRAGRLEQA 327
P+ VT L+VL +H G HYGC+VD+L RAG+L++A
Sbjct: 248 PDGVTLLAVLTVYAHKGCVEEGRTVFDAIERGDYGKVEVTIEHYGCMVDLLSRAGQLDEA 307
Query: 328 EKI--ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
K+ + IP+ + VV +LLGAC HGN++M E+ +K+ + GG Y+L+ ++
Sbjct: 308 YKMIEQMSIPN---NDVVWGVLLGACRMHGNIDMAEKAVQKLRILNPHEGGYYILLIDMY 364
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRS 413
GR +A +RR M+E A K G S
Sbjct: 365 TAAGRTAEAMEIRRTMNETGANKTTGWS 392
>gi|255564460|ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537522|gb|EEF39147.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 488
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 218/409 (53%), Gaps = 51/409 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ ++ ++ P+K+ L+ +++ S +P D F+ ++R C LG
Sbjct: 104 WNIIIGEFARSNLPEKSVDLFIDMRR-----DSHFQP--DDFSLPLVLRACAGSGLGKLG 156
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ +H + K+G ++V +ALV MYV+ G + ++ +FDE+ +R+ V W +++G +
Sbjct: 157 SSVHGLCVKMGLAVSLFVGSALVFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQN 216
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE + +F EM +D TR+ + + ++++L Q G+++
Sbjct: 217 GEPKLGLQVFREM-----------VDNSTRV--------KLDWVVMVSLLLVCGQLGSLK 257
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + +HG+ + ++ + N ++ Y KCG + A + F+ + +++ SW+S+I
Sbjct: 258 HGKSVHGWCVRNCLR-LELSLGNAIVHMYIKCGMLAYAHRFFDKM--PERDVFSWSSLIL 314
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+ + G A+ F++M G+KPN VTFL +L+AC HGGL
Sbjct: 315 GYGLSGNVSVALCLFDQMHMRGIKPNDVTFLGILSACGHGGLVEQARSYFKMMQNYGLVA 374
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HY +VD L RAGR E+AEK IP E + V+ IL G C H NVE+GER+ ++
Sbjct: 375 ELRHYATIVDCLARAGRFEEAEKFISDIPMEPDEAVLGAILAG-CRVHNNVEVGERIAKR 433
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ ++ G YVL+ N+ AGVGR+ +AE +R M E+N K PG SL+
Sbjct: 434 LIRLKPEKAGYYVLLANMYAGVGRFHEAEMVRDSMQEKNMSKVPGCSLL 482
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 207/423 (48%), Gaps = 83/423 (19%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P+ DS +Y+ +I V +L +L F S + L++ LG +
Sbjct: 187 PIQDSVSYNSMIDGYVKSGTIDLAREL--------FDSMPLEDKNLISWNSMLGGFAQTK 238
Query: 124 -------KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
+LF+++PER+LV+WN +I G K G +E+A SLF MP R+V+SW+ ++DGY
Sbjct: 239 DGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYA 298
Query: 177 RMNR---------------------------SNGASTE---------------PSEITIL 194
++ NG TE P E T++
Sbjct: 299 KLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLV 358
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L AI Q G V +H Y + G + +V+ LID Y+KCG I +A+ +F+ V
Sbjct: 359 VALSAISQLGHVEKAASMHNYFLENGISVTG-KVAVALIDMYSKCGSIENAILIFD--GV 415
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++K + W ++ISG A +G+GK A M ++ +KP+ +TF+ VLNAC+H GL
Sbjct: 416 DQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGL 475
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LG+AG +E A K +P E D ++ R LL AC
Sbjct: 476 ICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPND-IIWRTLLSACQ 534
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H N +GE + + ++ M+ N YVL+ NI A +G + A ++R +M ++N K PG
Sbjct: 535 NHENFTIGELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGC 594
Query: 413 SLV 415
S +
Sbjct: 595 SWI 597
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 164/347 (47%), Gaps = 54/347 (15%)
Query: 37 LADSPKKAFLLYKQLQQIYTHSHSPLRPLF------------DSFTYSFLIRTCVTLSYP 84
L D P L+ + + Y+H + P+R L D F++S +++ C +
Sbjct: 86 LDDDP----FLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLV 141
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H ++ K+ S++++ L+ MY+ G ++ + ++FD +P ++ V++N MI G
Sbjct: 142 EEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGY 201
Query: 145 VKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSE-------ITILA 195
VK G ++ AR LF+ MP +N++SW +L G+ + G + E E ++
Sbjct: 202 VKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNT 261
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
++ + G + + KR D+ + +ID YAK G I A LF+++
Sbjct: 262 IIGGFAKCGRIEFAHSLFNRMPKR-----DVISWSNMIDGYAKLGDIKVARTLFDEMP-- 314
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNACSHGG------ 308
K++V++ +I++G+A +G A+E F MQ+ L P+ T + L+A S G
Sbjct: 315 DKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAA 374
Query: 309 ------LHYG---------CLVDMLGRAGRLEQAEKIALGIPSEITD 340
L G L+DM + G +E A I G+ + D
Sbjct: 375 SMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGID 421
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 122/305 (40%), Gaps = 44/305 (14%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FNT++ Y+ +A ++ ++Q+ S L P D T + L +
Sbjct: 321 FNTIMAGYAQNGYYTEALEIFHEMQR-----QSNLSP--DETTLVVALSAISQLGHVEKA 373
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + G V AL++MY G ++++ +FD + ++ + WN MI+G+ +
Sbjct: 374 ASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARN 433
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A + EM + S +P IT + VL A G V+
Sbjct: 434 GLGKLAFGMLLEM---------------------HRLSVKPDGITFIGVLNACAHAGLVK 472
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ K ++ C++D K G + ALK E++ +E +++ W +++S
Sbjct: 473 EGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDII-WRTLLS 531
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327
H ENF + + L +++C+ Y L ++ R G A
Sbjct: 532 ACQNH-------ENFTIGELIA------KHLMTMDSCNSSS--YVLLSNIYARLGLWSAA 576
Query: 328 EKIAL 332
K+ +
Sbjct: 577 SKVRM 581
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 198/376 (52%), Gaps = 35/376 (9%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+S ++ C TL G ++HA K+G ++V+V+++L++MY +D+ +FD LP
Sbjct: 385 FSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP 444
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNR 180
E+N+V WN + +G G++ A LF++MP RN+ SW I+ GY + N
Sbjct: 445 EKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNA 504
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+ P EIT +VL A ++ ++ H K G I + L D YAK G
Sbjct: 505 MLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEE-SIFIGTALSDMYAKSG 563
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ ++F + +N V+WT++I G A +G+ + ++ FE M G+ PN TFL++
Sbjct: 564 DLQSSKRMF--YQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLAL 621
Query: 301 LNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
L ACSHGGL HY C+VD+L RAGRL +AE + + PS+ +
Sbjct: 622 LFACSHGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSK-S 680
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ LL AC+ + N E+GER +++ E+ + N YVL+ N+ A GR+ DA R+R
Sbjct: 681 EANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRV 740
Query: 400 VMDERNALKFPGRSLV 415
+M K G S V
Sbjct: 741 LMKGTTLKKDGGCSWV 756
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 142/321 (44%), Gaps = 60/321 (18%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQL-HAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
+RP + T+ +I+ CV L + + I F+S + V +L+ +Y+ +G
Sbjct: 245 VRP--NGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAA 302
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ K+FDE+ +++V+W ++ + G+L+ AR + + MP RN VSW ++ + + R
Sbjct: 303 AARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQ--R 360
Query: 181 SNGAST------------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
N A P+ +VL A +R IH K G ++ ++ V
Sbjct: 361 GNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMG-SSTNVFV 419
Query: 229 SNCLIDTYAKC-------------------------------GCIFSALKLFEDISVERK 257
S+ LID Y KC G + A+ LF+ + +
Sbjct: 420 SSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPA--R 477
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDM 317
NL SW +IISG+A + A+ +F M G P +TF SVL AC++ L +
Sbjct: 478 NLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACAN-------LCSL 530
Query: 318 LGRAGRLEQAEKIALGIPSEI 338
+ G++ A+ I LG+ I
Sbjct: 531 V--TGKMAHAKTIKLGMEESI 549
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 39/236 (16%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ +V G + + LFD +PER++V++ M+ L+K G + A L+E+ P +V +
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 217
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T + G+ R + A P+ IT + ++ A G I G K
Sbjct: 218 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 277
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----------------------- 255
F I V N LI Y + G +A K+F+++ V+
Sbjct: 278 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 337
Query: 256 ------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+N VSW ++I+ G AV+ + +M G +PN F SVL+AC+
Sbjct: 338 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 393
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 31/204 (15%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
T+S ++ C L G HA K+G + +++ TAL +MY G L+ S ++F +
Sbjct: 515 ITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQ 574
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+PERN VTW MI GL + G E + LFE+M + G T P
Sbjct: 575 MPERNDVTWTAMIQGLAENGLAEESILLFEDM----------MATGMT-----------P 613
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDTYAKCGCIFS 244
+E T LA+L A G V Q IH Y EK A+ I C++D A+ G +
Sbjct: 614 NEHTFLALLFACSHGGLVE--QAIH-YFEK--MQAWGISPKEKHYTCMVDVLARAGRLIE 668
Query: 245 ALKLFEDISVERKNLVSWTSIISG 268
A L + + SW +++S
Sbjct: 669 AEALLMK-TPSKSEANSWAALLSA 691
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
++D K G + A++L+E ++ +T+ ISGF + + A+ F +M G++
Sbjct: 189 MVDALMKRGRVAEAVELYEQ--CPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVR 246
Query: 292 PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
PN +TF+ ++ AC G +G + ++G A + E ++ + + + + +R
Sbjct: 247 PNGITFVCMIKACVGAG-EFGLAMSIVGSAIKSNFFES-SIEVQNSLITLYLR------- 297
Query: 352 SFHGNVEMGE-RVTRKVL-EMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
MG+ RKV EM+ + + + ++ + G A R+ M ERN + +
Sbjct: 298 -------MGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSW 350
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 198/382 (51%), Gaps = 37/382 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SFT+S L++ C T+ NLG Q HA ++ VYV +++MYV + + K+FD
Sbjct: 149 SFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD 208
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---------- 177
E+PER++++W +I + G +E A LFE +P +++V+WT ++ G+ +
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTY 236
+R + E+T+ + A Q GA + +K G++ D + + + LID Y
Sbjct: 269 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 328
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRV 295
+KCG + A+ +F +S+ KN+ +++S+I G A HG + A+ F M + +KPN V
Sbjct: 329 SKCGNVEEAVNVF--MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTV 386
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ L ACSH GL HY C+VD+LGR GRL++A ++
Sbjct: 387 TFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKT 446
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+ E V LLGAC H N E+ E + E+E G+Y+L+ N+ A G +
Sbjct: 447 MSVE-PHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGG 505
Query: 394 AERLRRVMDERNALKFPGRSLV 415
R+R+++ E+ K P S V
Sbjct: 506 VLRVRKLIKEKGLKKTPAVSWV 527
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 145/375 (38%), Gaps = 95/375 (25%)
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C+ L N Q+H + + G Y+ T L+ LG D
Sbjct: 59 CINL---NQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDP--------------- 100
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STE 187
YAR + E + RN WT ++ GY + + A
Sbjct: 101 --------------YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT 146
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEK----RGFNAFDIRVSNCLIDTYAKCGCIF 243
P T A+L A G +++ L + + RGF F + V N +ID Y KC I
Sbjct: 147 PVSFTFSALLKAC---GTMKDLNLGRQFHAQTFRLRGF-CF-VYVGNTMIDMYVKCESID 201
Query: 244 SALKLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGM 274
A K+F+++ S+ K++V+WT++++GFA +
Sbjct: 202 CARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAK 261
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334
+ A+E F+RM+K G++ + VT ++AC+ LG + ++A +IA
Sbjct: 262 PQEALEYFDRMEKSGIRADEVTVAGYISACAQ-----------LGASKYADRAVQIAQKS 310
Query: 335 PSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+D VV+ L+ S GNVE V + M N Y M LA GR +
Sbjct: 311 GYSPSDHVVIGSALIDMYSKCGNVEEAVNV---FMSMNNKNVFTYSSMILGLATHGRAQE 367
Query: 394 AERLRRVMDERNALK 408
A L M + +K
Sbjct: 368 ALHLFHYMVTQTEIK 382
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 191/340 (56%), Gaps = 36/340 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+++ Y + ++ LF ++P R++ +WN+MITG ++ +LE A+ LF++MP RNV++
Sbjct: 227 AMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVIT 286
Query: 168 WTGILDGYTRMNRS-------NGASTE---PSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
WT +++GY + +S NG E P+++T L + A + Q +H
Sbjct: 287 WTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMIC 346
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K F FD + + L++ YAKCG I A K+F D+S E K+++SW +I+ +A HG+G
Sbjct: 347 KTSFQ-FDTFIESTLMNLYAKCGEIRLARKVF-DLSKE-KDVISWNGMIAAYAHHGVGVE 403
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A+ +E+MQ+ G KPN VT++ +L+ACSH GL HY CL+
Sbjct: 404 AIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLI 463
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
D+ RAGRL A+++ + E + V LLG C+ HGN +G+ R +LE E N
Sbjct: 464 DLCSRAGRLGDAKRLIHFLKVEPSSTVW-NALLGGCNSHGNESIGDLAARNLLEAEPNNA 522
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G Y L+ NI A G++ +A ++R M++R K PG S +
Sbjct: 523 GTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 135/264 (51%), Gaps = 19/264 (7%)
Query: 63 RPLFD--SFTYSFLIRTCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
R LFD + + T + Y G + A+ ++ ++ V NT ++ Y S G
Sbjct: 86 RALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNT-MLEAYTSAGR 144
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
++D+ LFD +P R+ +WN+++ LV+ G ++ AR LF+ MP RNV++WT ++ G R
Sbjct: 145 VRDAWTLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARS 204
Query: 179 NRSNGAST------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+ A E + ++ A++ +G RN ++ + DI N +
Sbjct: 205 GSVDEARALFDGMPERNVVSWNAMI-----SGYARNHRIDEAHDLFMKMPTRDIASWNIM 259
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
I + + + A LF+ + R+N+++WT++++G+ + A++ F M G++P
Sbjct: 260 ITGFIQDRDLERAQDLFD--KMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRP 317
Query: 293 NRVTFLSVLNACSH-GGLHYGCLV 315
N+VTFL ++ACS+ GL G V
Sbjct: 318 NQVTFLGAVDACSNLAGLSEGQQV 341
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 32/249 (12%)
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
+ V HV V + G + D+ +LFD P+R++V+W ++ + G L AR
Sbjct: 27 AAVDVSGHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDAR 86
Query: 155 SLFEEMPC-RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVR 207
+LF+ RNVV+WT +L GY R R + A E + ++ +L A G VR
Sbjct: 87 ALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVR 146
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + G D N L+ + G + A KLF+ + +N+++WT++++
Sbjct: 147 DAWTLFD-----GMPVRDAGSWNILLAALVRSGNMDKARKLFD--RMPERNVMAWTTMVA 199
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327
G A G A F+ M P R N S + ++ R R+++A
Sbjct: 200 GIARSGSVDEARALFDGM------PER-------NVVS-----WNAMISGYARNHRIDEA 241
Query: 328 EKIALGIPS 336
+ + +P+
Sbjct: 242 HDLFMKMPT 250
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 45/272 (16%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP + T+ + C L+ + G Q+H +I K FQ ++ + L+N+Y G ++
Sbjct: 315 IRP--NQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRL 372
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+FD E+++++WN MI G A L+E+M + GY
Sbjct: 373 ARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEK----------GY------ 416
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+P+++T + +L A +G V I Y K A CLID ++ G
Sbjct: 417 -----KPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGR 471
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQKVGLKPNRVTFL 298
+ A +L + VE + V W +++ G HG +G A N + +PN
Sbjct: 472 LGDAKRLIHFLKVEPSSTV-WNALLGGCNSHGNESIGDLAARNL-----LEAEPN----- 520
Query: 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
NA + Y L ++ AG+ ++A KI
Sbjct: 521 ---NAGT-----YTLLCNIYASAGKWKEAAKI 544
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 49/376 (13%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP + F++S +++ C LS P G Q+++ K+G S V +L++MY G ++D
Sbjct: 332 IRP--NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 389
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K FD L E+NLV++N ++ G K + E A LF E ++ TGI
Sbjct: 390 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE------IADTGI---------- 433
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
S T ++L GA+ + IHG K G+ + + N LI Y++CG
Sbjct: 434 -----GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGN 487
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I +A ++F ++ E +N++SWTS+I+GFA HG A+E F +M + G KPN +T+++VL
Sbjct: 488 IEAAFQVFNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 545
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH G+ HY C+VD+LGR+G L +A + +P +
Sbjct: 546 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL-MA 604
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D +V R LLGAC HGN E+G +LE E + Y+L+ N+ A G++ D ++R+
Sbjct: 605 DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRK 664
Query: 400 VMDERNALKFPGRSLV 415
M ERN +K G S +
Sbjct: 665 SMKERNLIKEAGCSWI 680
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 136/290 (46%), Gaps = 51/290 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVS-LGFLKDSSK 124
+ + ++ +IR C +Y +G ++ + K G+ ++ V V L++M+V G L + K
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD++PERNLVTW +MIT + G A LF +M L GY
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME----------LSGYV-------- 228
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC---GC 241
P T +VL A + G + + +H + G A D+ V L+D YAKC G
Sbjct: 229 ---PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADGS 284
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHG-MGKAAVENFERMQKVGLKPNRVTFLSV 300
+ + K+FE + N++SWT+II+ + G K A+E F +M ++PN +F SV
Sbjct: 285 VDDSRKVFEQMP--EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 342
Query: 301 LNACSH-----------------GGLHYGC----LVDMLGRAGRLEQAEK 329
L AC + G C L+ M R+GR+E A K
Sbjct: 343 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARK 392
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 139/305 (45%), Gaps = 34/305 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D TYS L+++C+ LG +H + + G + V L+++Y G + + +F
Sbjct: 25 DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 84
Query: 127 DELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
+ + +R+LV+W+ M++ N + W I +T ++
Sbjct: 85 EGMGNKRDLVSWSAMVSCFAN-----------------NSMEWQAI---WTFLDMLE-LG 123
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK-CGCIFS 244
P+E AV+ A ++I+G+ K G+ D+ V LID + K G + S
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A K+F+ + +NLV+WT +I+ FA G + A++ F M+ G P+R T+ SVL+AC
Sbjct: 184 AYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241
Query: 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
+ GL G+ + I LG+ ++ + C+ G+V+ +V
Sbjct: 242 TELGLL---------ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 292
Query: 365 RKVLE 369
++ E
Sbjct: 293 EQMPE 297
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 206/394 (52%), Gaps = 55/394 (13%)
Query: 44 AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103
F ++++L + S +PL D ++ +IR C L G +H + K G
Sbjct: 135 CFWMFRELLR----SGAPL----DDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGH 186
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163
+V LV+MY ++D+ ++F ++ +R+L TW VMI L + G + F+ M +
Sbjct: 187 FVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQ 246
Query: 164 NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
+V P ++ ++ V+ A + GA+ + IH Y G+ +
Sbjct: 247 GIV---------------------PDKVALVTVVYACAKLGAMNKAKAIHAYINGTGY-S 284
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D+ + +ID YAKCG + SA +F+ + V +N+++W+++I+ + HG G+ A+E F
Sbjct: 285 LDVILGTAMIDMYAKCGSVESARWIFDRMQV--RNVITWSAMIAAYGYHGQGEKALELFP 342
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
M + G+ PNR+TF+S+L ACSH GL HY C+VD+LGRA
Sbjct: 343 MMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRA 402
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
GRL++A ++ G+P E D V+ LLGAC H ++++ ERV R +L+++ G YVL+
Sbjct: 403 GRLDEALEMIEGMPVE-KDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLL 461
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A G++ D + R +M + K PGR+ +
Sbjct: 462 SNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWI 495
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 47/291 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
Q+HA I+ G ++ V L+ MYV G L+D+ +LFD + +R+ +W+V++ G K G
Sbjct: 71 QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVG 130
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
+F E+ + LD Y + P V+ A ++
Sbjct: 131 NFFSCFWMFREL-----LRSGAPLDDY----------SAP------VVIRACRDLKDLKC 169
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+LIH K G + + V L+D YA+C + A ++F + + +++L +WT +I
Sbjct: 170 GRLIHCITLKCGLD-YGHFVCATLVDMYARCKVVEDAHQIF--VKMWKRDLATWTVMIGA 226
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH--------------GGLHYG-- 312
A G+ ++ F+RM+ G+ P++V ++V+ AC+ G Y
Sbjct: 227 LAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLD 286
Query: 313 -----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
++DM + G +E A I + ++ +V+ ++ A +HG E
Sbjct: 287 VILGTAMIDMYAKCGSVESARWIFDRM--QVRNVITWSAMIAAYGYHGQGE 335
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 188/380 (49%), Gaps = 75/380 (19%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ YV G + ++ K FDE+P +N +++N M+ G V++ ++ A LFE MPC
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC 322
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSE----------ITILAVLPAIWQNG-------- 204
RN+ SW ++ GY + NG + + ++ A++ QNG
Sbjct: 323 RNISSWNTMITGYGQ----NGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNM 378
Query: 205 ------------------AVRNC---------QLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
A+ C + +HG K GF V N L+ Y
Sbjct: 379 FVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFET-GCFVGNALLGMYF 437
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG A +FE I E K++VSW ++I+G+A HG G+ A+ FE M+K G+KP+ +T
Sbjct: 438 KCGSTDEANDVFEGI--EEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITM 495
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL+ACSH GL HY C++D+LGRAGRLE+AE + +P
Sbjct: 496 VGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMP 555
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ LLGA HGN E+GE+ V +ME N G YVL+ N+ A GR+VD
Sbjct: 556 FD-PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVG 614
Query: 396 RLRRVMDERNALKFPGRSLV 415
++R M E K G S V
Sbjct: 615 KMRSKMREAGVQKVTGYSWV 634
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 153/366 (41%), Gaps = 91/366 (24%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+ YV L D+ +LFD +P R++++WN MI+G + G+L A+ LF E P R+V +W
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTW 266
Query: 169 TGILDGYTRMNRSNGASTEP----------SEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T ++ GY + NG E +EI+ A+L G V+ +++
Sbjct: 267 TAMVSGYVQ----NGMVDEARKYFDEMPVKNEISYNAMLA-----GYVQYKKMVIAGELF 317
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+I N +I Y + G I A KLF+ + +++ VSW +IISG+A +G + A
Sbjct: 318 EAMPCRNISSWNTMITGYGQNGGIAQARKLFD--MMPQRDCVSWAAIISGYAQNGHYEEA 375
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACS-----------HG-----GLHYGCLV-----DM 317
+ F M++ G NR TF L+ C+ HG G GC V M
Sbjct: 376 LNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGM 435
Query: 318 LGRAGRLEQAEKIALGI-------------------------------------PSEITD 340
+ G ++A + GI P EIT
Sbjct: 436 YFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITM 495
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERG-----NGGDYVLMYNILAGVGRYVDAE 395
V V L ACS G ++ G T M+R Y M ++L GR +AE
Sbjct: 496 VGV----LSACSHSGLIDRG---TEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAE 548
Query: 396 RLRRVM 401
L R M
Sbjct: 549 NLMRNM 554
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 44/216 (20%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
A+++ Y+ + LFD++PER+L +WNVM+TG V+ L A LF+ MP ++VV
Sbjct: 81 NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140
Query: 167 SWTGILDGYTRMNRSNGASTEPSE----------ITILAVLPAIWQNGAVR--------- 207
SW +L GY + NG E E I+ +L A NG ++
Sbjct: 141 SWNAMLSGYAQ----NGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQ 196
Query: 208 --------NCQLIHGY------GEKRG-FNAFDIR---VSNCLIDTYAKCGCIFSALKLF 249
NC L+ GY G+ R F+ +R N +I YA+ G + A +LF
Sbjct: 197 SNWELISWNC-LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF 255
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ + +++ +WT+++SG+ +GM A + F+ M
Sbjct: 256 NESPI--RDVFTWTAMVSGYVQNGMVDEARKYFDEM 289
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G + ++F+ +P R+ V++N MI+G ++ + AR LF++MP R++ SW +L GY
Sbjct: 60 GHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYV 119
Query: 177 RMNRSNGAST------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS- 229
R R A + ++ A+L QNG V + + FN R S
Sbjct: 120 RNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREV--------FNKMPHRNSI 171
Query: 230 --NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
N L+ Y G + A +LFE S L+SW ++ G+ M A + F+RM
Sbjct: 172 SWNGLLAAYVHNGRLKEARRLFE--SQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 227
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 201/375 (53%), Gaps = 41/375 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T+ ++ +C +L P L + + ++ F+S+ +V TAL++M+ G L+ + K+F
Sbjct: 263 DETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIF 322
Query: 127 DELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS---- 181
++L +N VTWN MI+ + G+L AR LF +MP RN VSW ++ GY + S
Sbjct: 323 EQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAI 382
Query: 182 -------NGASTEPSEITILAVLPAIWQNGAV----RNCQLIHGYGEKRGFNAFDIRVSN 230
+ ++P E+T+++V A G + ++H K + + N
Sbjct: 383 QLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGY-----N 437
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LI Y +CG + A F++++ K+LVS+ ++ISG A HG G +++ +M++ G+
Sbjct: 438 SLIFMYLRCGSMEDARITFQEMAT--KDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGI 495
Query: 291 KPNRVTFLSVLNACSHGGL-----------------HYGCLVDMLGRAGRLEQAEKIALG 333
P+R+T++ VL ACSH GL HY C++DMLGR G+LE+A K+
Sbjct: 496 GPDRITYIGVLTACSHAGLLEEGWKVFESIKVPDVDHYACMIDMLGRVGKLEEAVKLIQS 555
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P E + LL A S H VE+GE K+ ++E N G+YVL+ NI A GR+ D
Sbjct: 556 MPME-PHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYALAGRWKD 614
Query: 394 AERLRRVMDERNALK 408
+++R M ++ K
Sbjct: 615 VDKVRDKMRKQGVKK 629
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 118/457 (25%), Positives = 189/457 (41%), Gaps = 113/457 (24%)
Query: 27 LFNTLLHFYSLADSPKKAFL-LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+F +L +YS + + + L+K +Q ++ ++P + SF Y LI+ S
Sbjct: 69 VFTCMLKYYSQIGATTQVVVSLFKHMQY-----YNDIKP-YTSF-YPVLIK-----SAGK 116
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP--------------- 130
G LHA + K+G +V A++ +Y G ++ + KLFDE+P
Sbjct: 117 AGMLLHAYLLKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYW 176
Query: 131 ------------------ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
E+N++TW M+TG K LE AR F+EMP R V SW +L
Sbjct: 177 KCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAML 236
Query: 173 DGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
GY + + + EP E T + VL + G + I ++ F
Sbjct: 237 SGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFR 296
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFE----------------------DISVER---- 256
+ + V L+D +AKCG + A K+FE D+S+ R
Sbjct: 297 S-NYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFN 355
Query: 257 ----KNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACSHGG--- 308
+N VSW S+I+G+A +G A++ F+ M KP+ VT +SV +AC H G
Sbjct: 356 KMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLG 415
Query: 309 --------LH----------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
LH Y L+ M R G +E A + ++ D+V L+
Sbjct: 416 LGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATK--DLVSYNTLISG 473
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ HG+ ++ K+ E G G D + +L
Sbjct: 474 LAAHGHGTESIKLMSKM--KEDGIGPDRITYIGVLTA 508
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 214/409 (52%), Gaps = 56/409 (13%)
Query: 28 FNTLLHFYSLADSPKK--AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+N+++ S + +P K L K +++ Y P ++FT +F+++ C +S
Sbjct: 127 WNSMIRGCSQSQTPSKEPVILFRKMVRRGY--------PNPNTFTMAFVLKACSIVSALE 178
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+HA + K GF S +V TALVN Y + +SK+FDE+ +RNLV W+ MI+G
Sbjct: 179 EGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYA 238
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G + A LF +M VV P E+T+++V+ A +GA
Sbjct: 239 RIGLVNEALGLFRDMQKAGVV---------------------PDEVTMVSVISACAASGA 277
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H Y K+ D+ +S L++ YAKCGCI A ++F+ + V K+ +W+S+
Sbjct: 278 LDTGKWVHAYINKQLIET-DLELSTALVNMYAKCGCIERAKEVFDAMPV--KDTKAWSSM 334
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I G A++G+ + A+E F RM++ +KPN VTF+ VL+AC+H GL
Sbjct: 335 IVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGI 394
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
YGC+VD+L RA +E A + +P V+ R +L+G C N++ E V
Sbjct: 395 VPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG-CKKSKNLDKSEVVA 453
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+++LE+E N +Y+L+ N+ A + ++ ++R+ M PG S
Sbjct: 454 QRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCS 502
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 36/230 (15%)
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST------------EPSE 190
L +G+++YAR LF ++ N+ SW ++ G ++ + P+
Sbjct: 102 ALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 161
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T+ VL A A+ Q +H K GF + V L++ YAKC I A K+F+
Sbjct: 162 FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPF-VETALVNFYAKCEDIVLASKVFD 220
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGL 309
+I+ +NLV+W+++ISG+A G+ A+ F MQK G+ P+ VT +SV++AC + G L
Sbjct: 221 EIT--DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGAL 278
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEIT 339
G LV+M + G +E+A+++ +P + T
Sbjct: 279 DTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDT 328
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/506 (27%), Positives = 239/506 (47%), Gaps = 104/506 (20%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
+NN+++ ++ + +H L+N L+ YSL+ + + + L +++
Sbjct: 67 TNNLSSAVNVFNQVPDPNVH---LYNYLIRAYSLSGNESNSLCAFGVLLKMHVDG----- 118
Query: 64 PLFDSFTYSFLIRTCV-TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY--------- 113
L D+FTY FL++ C + S+ +L +HA + K+GF ++V +L++ Y
Sbjct: 119 VLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMA 178
Query: 114 ----------------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELE 151
V G L + K+FDE+PER+ V+WN M+ G K GE++
Sbjct: 179 MKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMD 238
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----STEPSEITIL--AVLPAIWQNGA 205
A LFE M R++VSW+ ++ GY++ + A P + +L ++ + G
Sbjct: 239 KAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQ 298
Query: 206 VRNCQLIHGYGEKRGFNAFD----------------------------------IRVSNC 231
V+ + EK G D +V N
Sbjct: 299 VKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNS 358
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
ID YAKCGC+ A ++F + E K+LVSW S+I GF +HG G+ ++E F M + G K
Sbjct: 359 FIDMYAKCGCVDDAFRVFNGMKTE-KDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFK 417
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+R TF+ +L AC+H GL HYGC+VD+LGR G L++A
Sbjct: 418 PDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFW 477
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P E + ++ LLGAC H +V++ V++ + ++ + G++ L+ NI A G
Sbjct: 478 LVRSMPFE-PNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSG 536
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
+++ ++R+ M++ K G S +
Sbjct: 537 DWINVAKVRKQMNDEGGQKPSGVSSI 562
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 51/332 (15%)
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
PN Q+HA + K Y+ L+ Y L + +F+++P+ N+ +N +I
Sbjct: 35 PNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRA 94
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGIL-DGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G + F + +V G+L D +T G + S ++++
Sbjct: 95 YSLSGNESNSLCAFGVLLKMHV---DGVLADNFTYPFLLKGCNGSSSWLSLV-------- 143
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
+++H + EK GF +DI V N LID Y +CG + A+K+F +E +++VSW
Sbjct: 144 -------KMVHAHVEKLGF-YWDIFVPNSLIDCYCRCGDVEMAMKVFS--GMEERDVVSW 193
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG 322
S++ G +G A++ F+ M + +RV++ ++L D +AG
Sbjct: 194 NSMVGGLVKNGDLDGALKVFDEMP----ERDRVSWNTML--------------DGFTKAG 235
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
+++A K+ + D+V ++ S +G+++M + +R + VL
Sbjct: 236 EMDKAFKLFERMAER--DIVSWSTMVCGYSKNGDMDMARML------FDRCPVKNLVLWT 287
Query: 383 NILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
I++G Y + +++ M+ + ++ G L
Sbjct: 288 TIISG---YAEKGQVKEAMNLCDEMEKSGLRL 316
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 220/416 (52%), Gaps = 56/416 (13%)
Query: 23 HHTLLFNTLLHFYSLA-DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
H+ + + ++ Y+ + + K+A L+ ++ I H +RP + F++S +++ C L
Sbjct: 123 HNVMSWTAIITAYAQSGECDKEAIELFCKM--ISGH----IRP--NHFSFSSVLKACGNL 174
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
S P G Q+++ K+G S V +L++MY G ++D+ K FD L E+NLV++N ++
Sbjct: 175 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 234
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
G K + E A LF E ++ TGI S T ++L
Sbjct: 235 DGYAKNLKSEEAFLLFNE------IADTGI---------------GISAFTFASLLSGAA 273
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
GA+ + IHG K G+ + + N LI Y++CG I +A ++F ++ E +N++S
Sbjct: 274 SIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGNIEAAFQVFNEM--EDRNVIS 330
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
WTS+I+GFA HG A+E F +M + G KPN +T+++VL+ACSH G+
Sbjct: 331 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 390
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C+VD+LGR+G L +A + +P + D +V R LLGAC HGN E+
Sbjct: 391 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL-MADALVWRTLLGACRVHGNTEL 449
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G +LE E + Y+L+ N+ A G++ D ++R+ M ERN +K G S +
Sbjct: 450 GRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 505
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 131/289 (45%), Gaps = 49/289 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL---GFLKDSS 123
D FTYS ++ C L LG QLH+ + ++G V V +LV+MY G + DS
Sbjct: 55 DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSR 114
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEY-ARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
K+F+++PE N+++W +IT + GE + A LF +M + G+ R
Sbjct: 115 KVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKM-----------ISGHIR----- 158
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P+ + +VL A + ++ Y K G + + V N LI YA+ G +
Sbjct: 159 -----PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRM 212
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A K F DI E KNLVS+ +I+ G+A + + A F + G+ + TF S+L+
Sbjct: 213 EDARKAF-DILFE-KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 270
Query: 303 ACS-----------HGGLHYG----------CLVDMLGRAGRLEQAEKI 330
+ HG L G L+ M R G +E A ++
Sbjct: 271 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 319
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 49/231 (21%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
K+FD++PERNLVTW +MIT + G A LF +M L GY
Sbjct: 11 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME----------LSGYV------- 53
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC---G 240
P T +VL A + G + + +H + G A D+ V L+D YAKC G
Sbjct: 54 ----PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADG 108
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHG-MGKAAVENFERMQKVGLKPNRVTFLS 299
+ + K+FE + N++SWT+II+ +A G K A+E F +M ++PN +F S
Sbjct: 109 SVDDSRKVFEQMP--EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSS 166
Query: 300 VLNACSH-----------------GGLHYGC----LVDMLGRAGRLEQAEK 329
VL AC + G C L+ M R+GR+E A K
Sbjct: 167 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARK 217
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A K+F+ + +NLV+WT +I+ FA G + A++ F M+ G P+R T+ SVL+AC
Sbjct: 9 AYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66
Query: 305 SHGGL 309
+ GL
Sbjct: 67 TELGL 71
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 220/475 (46%), Gaps = 82/475 (17%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+HLL + +T ++NT++ YS A + FL + Q+ Q D ++
Sbjct: 102 HAHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVE--------MDCRSF 153
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
F ++ C G +H V+ K+GF + V LV+ Y G L + +FDE+ E
Sbjct: 154 VFALKACEQFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISE 213
Query: 132 RNLVTWNVMITGLVK--W----------------------------------GELEYARS 155
R++V+W MI G K W G+L ++
Sbjct: 214 RDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKT 273
Query: 156 LFEEMPCRNVVS----WTGILDGYTRMN---------RSNGASTEPSEITILAVLPAIWQ 202
E + RNV ILD Y + + GA+ P E T+ VLP Q
Sbjct: 274 FLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTMGAAFAPMENTLACVLPVCGQ 333
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
G + Q IH + +N + ++N LID YAKCG I A K+F D+ +NLVSW
Sbjct: 334 LGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDMP--ERNLVSW 391
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
S+I+ +A HG K A+ FERM G KP+ +T + VL+ACSHGGL
Sbjct: 392 NSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGLVAEGQEYFQNMKR 451
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY C++D+LGR G LE A ++ +P E L+ AC HGNVE+
Sbjct: 452 KYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPME-PSAAAWGALVHACRMHGNVEVA 510
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++LE++ + G YVL+ NI A R+ D + RR+M ER K PGRS+V
Sbjct: 511 KIAAPRLLELDPEDSGIYVLLANICASGRRWGDVKMARRMMRERRVKKIPGRSIV 565
>gi|115436706|ref|NP_001043111.1| Os01g0390600 [Oryza sativa Japonica Group]
gi|21328171|dbj|BAC00748.1| pentatricopeptide (PPR) repeat-containing-like protein [Oryza
sativa Japonica Group]
gi|113532642|dbj|BAF05025.1| Os01g0390600 [Oryza sativa Japonica Group]
Length = 657
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 191/373 (51%), Gaps = 35/373 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C S + G QLH VI K GF +H +V L++ Y S F+ + F + +
Sbjct: 282 LVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSH 341
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------G 183
+ +WN ++ L++ + AR LF++MP R+ +SW+ ++ GY + SN
Sbjct: 342 VASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLD 401
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
A EP+EIT+ + L A+ +G + + IH Y R D ++S LI+ YAKCG I
Sbjct: 402 AGVEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTD-KLSAGLINVYAKCGSIA 460
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLN 302
A++LF + + ++ W SII A+HG ++E F ++Q +KPN +T+L VLN
Sbjct: 461 EAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVLN 520
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC H G+ HYGC+VD+L RAG LE+AE + +P + D
Sbjct: 521 ACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMK-AD 579
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
VV +L A GNV +GE+ ++ +++ +G + + N+ A G + + +R+
Sbjct: 580 VVAWGCILAAARTQGNVALGEKAAEELSKLDPSHGASKIALSNLYADAGHWSNVSVVRKE 639
Query: 401 MDERNALKFPGRS 413
+ N + G S
Sbjct: 640 LQNENLERLTGSS 652
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 45/260 (17%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
H V + G V V T LV+ Y ++ + + +F+ +P+RN VTWN M+ VK G +
Sbjct: 166 HGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMI 225
Query: 151 EYARSLFEEMPCRNVVSWTGILDGY-----------TRMNRSNGASTEPSEITILAVLPA 199
A +F +P R+ VSW ++DGY T + +E+ ++ ++ A
Sbjct: 226 NMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKA 285
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI----------------- 242
++ AV Q +H K GF+A V LI Y C I
Sbjct: 286 CSRHSAVSEGQQLHTVILKNGFDAHAF-VQATLIHYYGSCDFIDHAQMQFKLSDKSHVAS 344
Query: 243 --------------FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
A +LF+D+ ++ +SW+++ISG+ G A++ F M
Sbjct: 345 WNALMASLLRRNLVHEARQLFDDM--PERDTISWSTLISGYVQSGNSNMALQIFCSMLDA 402
Query: 289 GLKPNRVTFLSVLNACSHGG 308
G++PN +T S L+A ++ G
Sbjct: 403 GVEPNEITLASALSAVANSG 422
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 156/329 (47%), Gaps = 52/329 (15%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYV----SLGFLKDSS 123
F S L LS+ G QLHA+ +K G S+++V +L+ Y SL +
Sbjct: 12 FLVSSLKSAAARLSH---GEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAY----- 63
Query: 124 KLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
LFDE+P R+ N++++ L + G LE A+ L EMP R+ VS+T ++ +R
Sbjct: 64 HLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHP 123
Query: 182 NGA----------STEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
A + +P+E+T+ VL A+ +GA HG +RG + F I +N
Sbjct: 124 ERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATN 183
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+ Y + SA +FE + +N V+W ++++ + GM A E F G+
Sbjct: 184 -LVHAYGAVSQVPSARSIFE--LMPDRNTVTWNTMLNCYVKAGMINMAAEVF------GV 234
Query: 291 KPNR--VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
P R V++L++++ Y C D L +A R A +GI + + V+ L+
Sbjct: 235 IPERDEVSWLTMIDG-------YMC-ADFLLQALRTYVAMVGTVGIRA---NEVILVGLV 283
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGD 377
ACS H V G+++ +L+ NG D
Sbjct: 284 KACSRHSAVSEGQQLHTVILK----NGFD 308
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 190/386 (49%), Gaps = 67/386 (17%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P ++FT S ++R C L G Q+H + G +V ALV+MY SLG + D+
Sbjct: 113 PRPNAFTASSVVRCCSALRAVREGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADAR 172
Query: 124 KLFDELP-------------------------------ERNLVTWNVMITGLVKWGELEY 152
++FDE+P ER+ ++WN ++ G ++ GE
Sbjct: 173 RVFDEMPSTNVVLGNTMVACYVRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGV 232
Query: 153 ARSLFEEMPCRNVVSWTGIL----------DGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
AR LFEEMP RNV SW ++ D NR A +P T+ ++ A Q
Sbjct: 233 ARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQ 292
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
G++ +HG ++G + V N LID YAKCG + A LF + K+ VS+
Sbjct: 293 LGSLSIASQVHGI-LRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLF--VETRLKDTVSY 349
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
+I A HG G+ A++ F+ M + GL+P+ VTFL VL+AC+H GL
Sbjct: 350 NVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRT 409
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY C+VD+ GRAG +E+A ++A +P + V L+ AC H NVE+G
Sbjct: 410 NYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVK-PHAGVWGALINACRKHCNVEVG 468
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILA 386
+ R+++ +E GN G YVL+ N LA
Sbjct: 469 KVAARELIAIEPGNPGTYVLLANTLA 494
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 42/301 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T + L+ C L ++ +Q+H ++ K + + +V +L++MY G + + LF
Sbjct: 279 DPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLF 338
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
E ++ V++NVMI L + G A +F+EM S G+
Sbjct: 339 VETRLKDTVSYNVMICALAQHGHGRDALQIFDEM------SEEGL--------------- 377
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDTYAKCGCI 242
+P +T L VL A G V + + Y E N + I S C++D Y + G I
Sbjct: 378 QPDAVTFLGVLSACAHAGLVHDGKF---YFESMRTN-YAIEQSPDHYACMVDLYGRAGLI 433
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMH---GMGKAAVENFERMQKVGLKP-NRVTFL 298
A +L + V+ V W ++I+ H +GK A + ++P N T++
Sbjct: 434 EEAYQLARAMPVKPHAGV-WGALINACRKHCNVEVGKVAAREL-----IAIEPGNPGTYV 487
Query: 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
+ N + G V+ + ++ R + EK A G D VV L+G S + E
Sbjct: 488 LLANTLARG--QQWDFVETVWQSMRGKGIEKTA-GCSWLEVDRVVHEFLMGESSHPNSDE 544
Query: 359 M 359
+
Sbjct: 545 I 545
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 252 ISVERKNLVSWTSIISGFAMHG-----MGKAAVENFERMQKVGL-KPNRVTFLSVLNACS 305
+ +N+ WT+ I+ +A H + A+ F M + G+ +PN T SV+ CS
Sbjct: 69 VPAASENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCS 128
Query: 306 -----------HGGL---------HYGC-LVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
HG L H G LVDM G GR+ A ++ +PS T+VV+
Sbjct: 129 ALRAVREGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPS--TNVVLG 186
Query: 345 RILLGACSFHGNVEMGERVTRKVLEME 371
++ G+VE G V ++ E +
Sbjct: 187 NTMVACYVRAGDVEAGRDVFDRMAERD 213
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/445 (30%), Positives = 201/445 (45%), Gaps = 97/445 (21%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY----------- 113
L DSFTY +I+ C G LH + G +YV T+L++MY
Sbjct: 125 LPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARK 184
Query: 114 --------------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA 153
V++G + ++ KLFDE+P RN+ +WN M+ G VK G+L A
Sbjct: 185 VFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGA 244
Query: 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------------------------- 184
R +F+ MP +NVVS+T ++DGY + A
Sbjct: 245 RGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPN 304
Query: 185 ------------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+ +P E +++++ A Q G + Q + Y K + V L
Sbjct: 305 QALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAAL 364
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
+D AKCG + ALKLF++ R+++V + S+I G ++HG G+ AV F RM GL P
Sbjct: 365 LDMNAKCGNMERALKLFDE--KPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTP 422
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
+ V F +L ACS GL HY C+VD+L R+G + A ++
Sbjct: 423 DEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYEL 482
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
IP E LLGAC +G+ E+GE V ++ E+E N +YVL+ +I A R
Sbjct: 483 IKLIPWE-PHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAER 541
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
++D +R M ER K PG S +
Sbjct: 542 WIDVSLVRSKMRERRVRKIPGSSKI 566
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYV 114
+HS SP R L + + + L++ C + Q+HA I G Q H V + +
Sbjct: 19 SHS-SPFR-LHSAASITTLLKACKKREHLE---QVHACIIHRGLEQDHFLVFLFISRAHT 73
Query: 115 SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
L L +S +F + + V WN +I + +N+ S T L
Sbjct: 74 LLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQ----------------KNLFSHT--LSA 115
Query: 175 YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
+ RM +++GA P T +V+ A R + +HG + G + D+ V LID
Sbjct: 116 FARM-KAHGAL--PDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQ-DLYVGTSLID 171
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
Y KCG I A K+F+ +S +N+VSWT+++ G+ G A + F+ M
Sbjct: 172 MYGKCGEIADARKVFDGMS--DRNVVSWTAMLVGYVAVGDVVEARKLFDEM 220
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 226/461 (49%), Gaps = 63/461 (13%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFY----SLADS-------PKKAFLLYKQLQQIYTHSH 59
IH L + L+ N L+HFY SL D+ P++ + + L Y +
Sbjct: 164 IHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAG 223
Query: 60 ---------------SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104
+RP ++ T + + G LH +++ G V
Sbjct: 224 LADEAWRLFCRMVVVGGMRP--NAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVN 281
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
++ ALV+M+ G ++ + ++FD + +++ +W M+ K G+LE A LF++MP RN
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRN 341
Query: 165 VVSWTGILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
VVSW+ ++ Y+++N+ A +P + T+++VL A Q G + + I+
Sbjct: 342 VVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYE 401
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+ + N LID +AKCG + A KLF++++ +N+VSW ++I A+HG
Sbjct: 402 NYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMA--ERNVVSWNTMIMAHAVHGQ 459
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
+ A+ FE+++ + P+++TFL +L +CSH GL HY
Sbjct: 460 SEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYA 519
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C++D+LG+ G LE+A ++A G+P E D LL AC HGNVE+G V K++E++
Sbjct: 520 CMIDLLGKVGLLEEAFEVARGMPME-ADEAGWGALLNACRMHGNVEIGACVADKLVELDP 578
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ G YVLM I A ++ + LR M +R K PG S
Sbjct: 579 SDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCS 619
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 180/443 (40%), Gaps = 110/443 (24%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSP---------------KKAFLLYKQLQQI 54
++H+ LLT L H + LL F +L+ P A++L ++
Sbjct: 53 QLHA-LLTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAILARASPGPNAYMLGTMMRG- 110
Query: 55 YTHSHSPLRPL------------FDSFTYSFLIRTCVTL------SYPNLGTQLHAVISK 96
+ + P R L D+ T+ F ++ P+ G +H K
Sbjct: 111 FLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALK 170
Query: 97 VGFQSH-VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
GF V V ALV+ Y + L D+ K+FDE+PER++V+W ++ G + G + A
Sbjct: 171 CGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWR 230
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
LF CR VV P+ +T++A + AI Q G + ++H Y
Sbjct: 231 LF----CRMVVV----------------GGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKY 270
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------------------- 255
+ G A + + N L+D + KCGC+ A ++F+ + V+
Sbjct: 271 VTEGGV-ARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLES 329
Query: 256 ---------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
R+N+VSW+ +I+ ++ + AV F M G+ P T +SVL+AC+
Sbjct: 330 AEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQ 389
Query: 307 -GGLHYG---------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
G L G L+DM + G + +A K+ + +VV
Sbjct: 390 LGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAER--NVVSW 447
Query: 345 RILLGACSFHGNVEMGERVTRKV 367
++ A + HG E R+ ++
Sbjct: 448 NTMIMAHAVHGQSEEAIRLFEQL 470
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 220/416 (52%), Gaps = 56/416 (13%)
Query: 23 HHTLLFNTLLHFYSLA-DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
H+ + + ++ Y+ + + K+A L+ ++ I H +RP + F++S +++ C L
Sbjct: 118 HNVMSWTAIITAYAQSGECDKEAIELFCKM--ISGH----IRP--NHFSFSSVLKACGNL 169
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
S P G Q+++ K+G S V +L++MY G ++D+ K FD L E+NLV++N ++
Sbjct: 170 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 229
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
G K + E A LF E ++ TGI S T ++L
Sbjct: 230 DGYAKNLKSEEAFLLFNE------IADTGI---------------GISAFTFASLLSGAA 268
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
GA+ + IHG K G+ + + N LI Y++CG I +A ++F ++ E +N++S
Sbjct: 269 SIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGNIEAAFQVFNEM--EDRNVIS 325
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
WTS+I+GFA HG A+E F +M + G KPN +T+++VL+ACSH G+
Sbjct: 326 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 385
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C+VD+LGR+G L +A + +P + D +V R LLGAC HGN E+
Sbjct: 386 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL-MADALVWRTLLGACRVHGNTEL 444
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G +LE E + Y+L+ N+ A G++ D ++R+ M ERN +K G S +
Sbjct: 445 GRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 500
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 131/289 (45%), Gaps = 49/289 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL---GFLKDSS 123
D FTYS ++ C L LG QLH+ + ++G V V +LV+MY G + DS
Sbjct: 50 DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSR 109
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEY-ARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
K+F+++PE N+++W +IT + GE + A LF +M + G+ R
Sbjct: 110 KVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKM-----------ISGHIR----- 153
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P+ + +VL A + ++ Y K G + + V N LI YA+ G +
Sbjct: 154 -----PNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRM 207
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A K F DI E KNLVS+ +I+ G+A + + A F + G+ + TF S+L+
Sbjct: 208 EDARKAF-DILFE-KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 265
Query: 303 ACS-----------HGGLHYG----------CLVDMLGRAGRLEQAEKI 330
+ HG L G L+ M R G +E A ++
Sbjct: 266 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 314
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 49/231 (21%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
K+FD++PERNLVTW +MIT + G A LF +M L GY
Sbjct: 6 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME----------LSGYV------- 48
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC---G 240
P T +VL A + G + + +H + G A D+ V L+D YAKC G
Sbjct: 49 ----PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADG 103
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHG-MGKAAVENFERMQKVGLKPNRVTFLS 299
+ + K+FE + N++SWT+II+ +A G K A+E F +M ++PN +F S
Sbjct: 104 SVDDSRKVFEQMP--EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSS 161
Query: 300 VLNACSH-----------------GGLHYGC----LVDMLGRAGRLEQAEK 329
VL AC + G C L+ M R+GR+E A K
Sbjct: 162 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARK 212
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A K+F+ + +NLV+WT +I+ FA G + A++ F M+ G P+R T+ SVL+AC
Sbjct: 4 AYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61
Query: 305 SHGGL 309
+ GL
Sbjct: 62 TELGL 66
>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 577
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 206/411 (50%), Gaps = 42/411 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ ++ ++ +++Q+QQ + L L D T + TC L
Sbjct: 111 YNTLISSFTHHGLYVESMNIFRQMQQDFD-----LLAL-DEITLVSIAGTCACLGALEFL 164
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H +G + ++ V A+V+ Y G S +F + ER++VTW M+ +
Sbjct: 165 RQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQT 224
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
L+ A +F MP +NV +WT +++ + SN A T P+ T + VL
Sbjct: 225 SRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVL 284
Query: 198 PAIWQNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
A + + IHG +R N ++ V N LID Y+K G + SA LF I
Sbjct: 285 SACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLIL-- 342
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K++VSW S+I+GFA +G+G+ A+ F +M +VG++PN+VTFL+VL+ACSH GL
Sbjct: 343 EKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLC 402
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HY ++DM GR RL +A + P+ V + +LGAC
Sbjct: 403 ILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGSKHVGIWGAVLGACRI 462
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
H N+++ R + EME N G YV++ N+ A R++DA +R++M+ER
Sbjct: 463 HENLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMDAHNVRKLMEER 513
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 47/293 (16%)
Query: 61 PLRPLFDSFTY-SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
PL LF SF + + L C+ + +G LH+ + K +++ L++MY +
Sbjct: 3 PLSDLFPSFDHCARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSM 62
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT--- 176
+++ K FD+LP RN+ +WN ++ + G AR +F+EMP N+VS+ ++ +T
Sbjct: 63 ENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHG 122
Query: 177 ---------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
R + + EIT++++ GA+ + +HG G F++
Sbjct: 123 LYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLE-FNMI 181
Query: 228 VSNCLIDTYAKCG------CIFS-------------------------ALKLFEDISVER 256
V N ++D Y KCG IFS A ++F + V
Sbjct: 182 VCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPV-- 239
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
KN+ +WT++I+ + A++ F++M + PN TF+ VL+AC+ L
Sbjct: 240 KNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLAL 292
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 50/216 (23%)
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---------------------RK---- 257
+FD+ ++N LID Y+KC + +A K F+D+ + RK
Sbjct: 43 SFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDE 102
Query: 258 ----NLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSHGGLHY 311
N+VS+ ++IS F HG+ ++ F +MQ+ L + +T +S+ C+
Sbjct: 103 MPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCA------ 156
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL--LGACSFHGNVEMGERVTRKVLE 369
LG L Q A+ I E +V I+ G C G+ + + ++ E
Sbjct: 157 -----CLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKC---GDPDASYSIFSRMKE 208
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
+ V+ YN R DA R+ M +N
Sbjct: 209 RDVVTWTSMVVAYN---QTSRLDDAFRVFSCMPVKN 241
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 209/409 (51%), Gaps = 54/409 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ L+ YS + +A L+ ++ H +P + FT S L++ T + G
Sbjct: 174 WTVLISGYSQSGQASEALALFPKML------HLGFQP--NEFTLSSLLKASGTGPSDHHG 225
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLHA K G+ +V+V ++L++MY ++++ +F+ L +N+V+WN +I G +
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE E+ LF +M + G+ EP+ T +V A +G++
Sbjct: 286 GEGEHVMRLFLQM----------LRQGF-----------EPTHFTYSSVFTACASSGSLE 324
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + K G + N LID YAK G I A K+F + ++++VSW SIIS
Sbjct: 325 QGKWVHAHVIKSGGQPI-AYIGNTLIDMYAKSGSIKDAKKVFRRLV--KQDIVSWNSIIS 381
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+A HG+G A++ FE+M K ++PN +TFLSVL ACSH GL
Sbjct: 382 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEA 441
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
H+ +VD+LGRAGRL +A K +P + T V LLG+C H N+++G +
Sbjct: 442 QVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPT-AAVWGALLGSCRMHKNMDLGVYAAEQ 500
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E++ + G +VL+ NI A GR DA ++R++M E K P S V
Sbjct: 501 IFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWV 549
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 45/281 (16%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
YS ++ C L G +HA I F+ + + ++NMY G L+++ LFD++P
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+++V+W V+I+G + G+ A +LF +M + G+ +P+E
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKM----------LHLGF-----------QPNE 206
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T+ ++L A + + + +H + K G++ ++ V + L+D YA+ + A +F
Sbjct: 207 FTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD-MNVHVGSSLLDMYARWAHMREAKVIFN 265
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGL 309
++ KN+VSW ++I+G A G G+ + F +M + G +P T+ SV AC S G L
Sbjct: 266 SLAA--KNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSL 323
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKI 330
G L+DM ++G ++ A+K+
Sbjct: 324 EQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKV 364
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 218/423 (51%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L+ Y+ + K+A L+K++ + + ++P D T ++ C + LG
Sbjct: 203 WNALISGYAETGNYKEALELFKEMMK------TNVKP--DESTMVTVLSACAQSASIELG 254
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I GF S++ + AL+++Y+ K
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYI-------------------------------KC 283
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GE+E A LFE + ++V+SW ++ GYT MN A P+E+T+L++L
Sbjct: 284 GEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSIL 343
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y +KR N +R S LID YAKCG I +A ++F+ S+
Sbjct: 344 PACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTS--LIDMYAKCGDIEAAQQVFD--SM 399
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++L SW ++I GFAMHG A + F RM+K G++P+ +TF+ +L+ACSH G+
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR 459
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G ++AE++ + + D V+ LL AC
Sbjct: 460 HIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMD-PDGVIWCSLLKACK 518
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNVE+GE + ++++E N G YVL+ NI A GR+ + + R +++++ K PG
Sbjct: 519 MHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGC 578
Query: 413 SLV 415
S +
Sbjct: 579 SSI 581
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 210/449 (46%), Gaps = 87/449 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + + L P +S+T+ FL++ C
Sbjct: 69 LIWNTMFRGHALSSDPVSALYLYVCMISL------GLVP--NSYTFPFLLKACAKSKAFR 120
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G +YV+T+L+ MYV G +D+ K+FD+ R++V++ +I G
Sbjct: 121 EGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYA 180
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G + A+ +F+E+P ++VVSW ++ GY A + +P E T++
Sbjct: 181 SNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVT 240
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q+ ++ + +H + + GF + ++++ N LID Y KCG + +A LFE +S
Sbjct: 241 VLSACAQSASIELGRQVHSWIDDHGFGS-NLKIVNALIDLYIKCGEVETASGLFEGLSY- 298
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G + G
Sbjct: 299 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRW 357
Query: 313 --------------------CLVDMLGRAGRLEQAEKI---------------------- 330
L+DM + G +E A+++
Sbjct: 358 IHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMH 417
Query: 331 -----ALGI----------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
A I P +IT V LL ACS G +++G + R + E +
Sbjct: 418 GRANPAFDIFSRMRKDGIEPDDITFVG----LLSACSHSGMLDLGRHIFRSMTEDYKITP 473
Query: 376 G--DYVLMYNILAGVGRYVDAERLRRVMD 402
Y M ++L G + +AE + M+
Sbjct: 474 KLEHYGCMIDLLGHSGLFKEAEEMINSME 502
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 36/186 (19%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A+ +F+ S++ NL+ W ++ G A+ +A+ + M +GL PN TF +L AC
Sbjct: 56 AISVFD--SIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKAC 113
Query: 305 S-----------HGG-LHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+ HG L GC L+ M + GR E A K+ S DVV
Sbjct: 114 AKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVF--DQSSHRDVVS 171
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL----AGVGRYVDAERLRR 399
L+ + +G + +++ ++ + V+ +N L A G Y +A L +
Sbjct: 172 YTALIKGYASNGYIXSAQKMFDEIPVKD-------VVSWNALISGYAETGNYKEALELFK 224
Query: 400 VMDERN 405
M + N
Sbjct: 225 EMMKTN 230
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 214/409 (52%), Gaps = 56/409 (13%)
Query: 28 FNTLLHFYSLADSPKK--AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+N+++ S + +P K L K +++ Y P ++FT +F+++ C +S
Sbjct: 58 WNSMIRGCSQSQTPSKEPVILFRKMVRRGY--------PNPNTFTMAFVLKACSIVSALE 109
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+HA + K GF S +V TALVN Y + +SK+FDE+ +RNLV W+ MI+G
Sbjct: 110 EGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYA 169
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G + A LF +M VV P E+T+++V+ A +GA
Sbjct: 170 RIGLVNEALGLFRDMQKAGVV---------------------PDEVTMVSVISACAASGA 208
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H Y K+ D+ +S L++ YAKCGCI A ++F+ + V K+ +W+S+
Sbjct: 209 LDTGKWVHAYINKQLIET-DLELSTALVNMYAKCGCIERAKEVFDAMPV--KDTKAWSSM 265
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I G A++G+ + A+E F RM++ +KPN VTF+ VL+AC+H GL
Sbjct: 266 IVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGI 325
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
YGC+VD+L RA +E A + +P V+ R +L+G C N++ E V
Sbjct: 326 VPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG-CKKSKNLDKSEVVA 384
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+++LE+E N +Y+L+ N+ A + ++ ++R+ M PG S
Sbjct: 385 QRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCS 433
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 36/230 (15%)
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST------------EPSE 190
L +G+++YAR LF ++ N+ SW ++ G ++ + P+
Sbjct: 33 ALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 92
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T+ VL A A+ Q +H K GF + V L++ YAKC I A K+F+
Sbjct: 93 FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPF-VETALVNFYAKCEDIVLASKVFD 151
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGL 309
+I+ +NLV+W+++ISG+A G+ A+ F MQK G+ P+ VT +SV++AC + G L
Sbjct: 152 EIT--DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGAL 209
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEIT 339
G LV+M + G +E+A+++ +P + T
Sbjct: 210 DTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDT 259
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 188/366 (51%), Gaps = 38/366 (10%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
N G +HA++ G V+V+T L+ +Y G L S ++FD++P R+ +TWN M+
Sbjct: 132 NPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQY 191
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------------STEPSEI 191
+ G+++ A +F MP R+VVSW +L GY R A + P+
Sbjct: 192 ARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP 251
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ +L A G + +H Y E+ N D + CLID Y KCG I +AL++FE
Sbjct: 252 TMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDRCLIDMYCKCGSIDNALQVFEK 310
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +K+L SWT++I G AMHG A+ F+ MQ G+ P+ VT + VLNAC+HGGL
Sbjct: 311 -APRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVD 369
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC++D+LGR GRL++A + +P + + V+ L
Sbjct: 370 EGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD-PNTVIWGAFLS 428
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC HGN+E+G+ ++ ++ + V++ ++ A ++ R RR M+ K
Sbjct: 429 ACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKT 488
Query: 410 PGRSLV 415
PG S +
Sbjct: 489 PGCSSI 494
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 144/341 (42%), Gaps = 73/341 (21%)
Query: 87 GTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ +H ++ K G ++ TAL++ Y +LG + +LFDE+PE+ LV M V
Sbjct: 28 ASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHV 87
Query: 146 KWGELEYARSLFEEM-----------------PCRNVVSWTGILDGYTRMNRSNGASTEP 188
G+ A ++F +M C SWT R N
Sbjct: 88 ASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTA---------RRNPGKMIH 138
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIRVS---NCLIDTYAK 238
+ + ++P ++ + +LI YGE +R F+ R + N ++ YA+
Sbjct: 139 ALVVTSGIVPDVFV-----STELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYAR 193
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM---QKVGLKPNRV 295
G + +A ++F +++ R+++VSW ++++G+ + G + A+ F +M + PN
Sbjct: 194 HGKVDTAYEMF--LAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP 251
Query: 296 TFLSVLNACSHGG-LHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T ++L AC+ G L G CL+DM + G ++ A ++
Sbjct: 252 TMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKA 311
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
P + D+ ++ + HG R + +M + NG
Sbjct: 312 PRK-KDLFSWTTVICGLAMHGRTTDALR----MFDMMQDNG 347
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT+L Y +A ++A L++Q+ + + P P T S ++ C G
Sbjct: 215 WNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP-----TMSTILGACAGAGCLETG 269
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVK 146
+HA I + Y++ L++MY G + ++ ++F++ P +++L +W +I GL
Sbjct: 270 IWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAM 329
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G A +F+ M + NG P ++T++ VL A G V
Sbjct: 330 HGRTTDALRMFD-------------------MMQDNGIC--PDDVTLVGVLNACAHGGLV 368
Query: 207 RNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
L + Y + F I C+ID + G + A + + ++ N V W +
Sbjct: 369 DE-GLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD-PNTVIWGAF 426
Query: 266 ISGFAMHG---MGKAAVENFERMQ 286
+S +HG +GK A E R+
Sbjct: 427 LSACKVHGNMELGKIAAEELTRLD 450
>gi|125570503|gb|EAZ12018.1| hypothetical protein OsJ_01900 [Oryza sativa Japonica Group]
Length = 657
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 191/373 (51%), Gaps = 35/373 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C S + G QLH VI K GF +H +V L++ Y S F+ + F + +
Sbjct: 282 LVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSH 341
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------G 183
+ +WN ++ L++ + AR LF++MP R+ +SW+ ++ GY + SN
Sbjct: 342 VASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLD 401
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
A EP+EIT+ + L A+ +G + + IH Y R D ++S LI+ YAKCG I
Sbjct: 402 AGVEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTD-KLSAGLINVYAKCGSIA 460
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLN 302
A++LF + + ++ W SII A+HG ++E F ++Q +KPN +T+L VLN
Sbjct: 461 EAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVLN 520
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC H G+ HYGC+VD+L RAG LE+AE + +P + D
Sbjct: 521 ACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMK-AD 579
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
VV +L A GNV +GE+ ++ +++ +G + + N+ A G + + +R+
Sbjct: 580 VVAWGCILAAARTQGNVALGEKAAEELSKLDPSHGASKIALSNLYADAGHWSNVSVVRKE 639
Query: 401 MDERNALKFPGRS 413
+ N + G S
Sbjct: 640 LQNENLERLTGSS 652
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 45/260 (17%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
H V + G V V T LV+ Y ++ + + +F+ +P+RN VTWN M+ VK G +
Sbjct: 166 HGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMI 225
Query: 151 EYARSLFEEMPCRNVVSWTGILDGY-----------TRMNRSNGASTEPSEITILAVLPA 199
A +F +P R+ VSW ++DGY T + +E+ ++ ++ A
Sbjct: 226 NMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKA 285
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI----------------- 242
++ AV Q +H K GF+A V LI Y C I
Sbjct: 286 CSRHSAVSEGQQLHTVILKNGFDAHAF-VQATLIHYYGSCDFIDHAQMQFKLSDKSHVAS 344
Query: 243 --------------FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
A +LF+D+ ++ +SW+++ISG+ G A++ F M
Sbjct: 345 WNALMASLLRRNLVHEARQLFDDM--PERDTISWSTLISGYVQSGNSNMALQIFCSMLDA 402
Query: 289 GLKPNRVTFLSVLNACSHGG 308
G++PN +T S L+A ++ G
Sbjct: 403 GVEPNEITLASALSAVANSG 422
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 156/329 (47%), Gaps = 52/329 (15%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYV----SLGFLKDSS 123
F S L LS+ G QLHA+ +K G S+++V +L+ Y SL +
Sbjct: 12 FLVSSLKSAAARLSH---GEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAY----- 63
Query: 124 KLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
LFDE+P R+ N++++ L + G LE A+ L EMP R+ VS+T ++ +R
Sbjct: 64 HLFDEIPPLLRDATAQNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHP 123
Query: 182 NGA----------STEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
A + +P+E+T+ VL A+ +GA HG +RG + F I +N
Sbjct: 124 ERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATN 183
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+ Y + SA +FE + +N V+W ++++ + GM A E F G+
Sbjct: 184 -LVHAYGAVSQVPSARSIFE--LMPDRNTVTWNTMLNCYVKAGMINMAAEVF------GV 234
Query: 291 KPNR--VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
P R V++L++++ Y C D L +A R A +GI + + V+ L+
Sbjct: 235 IPERDEVSWLTMIDG-------YMC-ADFLLQALRTYVAMVGTVGIRA---NEVILVGLV 283
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGD 377
ACS H V G+++ +L+ NG D
Sbjct: 284 KACSRHSAVSEGQQLHTVILK----NGFD 308
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 193/372 (51%), Gaps = 47/372 (12%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
FD T ++ C + LG + + + G + + TAL++MY G + + +L
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRL 278
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + R++V W+ MI+G + + A LF EM A
Sbjct: 279 FDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM---------------------QLAR 317
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
EP+++T+++VL A GA+ + +H Y ++ + I + L+D YAKCGCI A
Sbjct: 318 VEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTI-LGTALVDFYAKCGCIDDA 376
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++ FE + V KN +WT++I G A +G G+ A+E F M++ G++P VTF+ VL ACS
Sbjct: 377 VEAFESMPV--KNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACS 434
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
H L HYGC+VD+LGRAG +++A + +P E + V+
Sbjct: 435 HSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIE-PNAVI 493
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
R LL +C+ H NV +GE ++++ + + GDYVL+ NI A G++ DA +R+ M +
Sbjct: 494 WRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKD 553
Query: 404 RNALKFPGRSLV 415
R K PG SL+
Sbjct: 554 RGIEKTPGCSLI 565
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 31/301 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T +N L+ + A P+ A L+ ++ ++ S P D T + +++C +
Sbjct: 83 TPCYNVLMRAFLHAGHPEDALHLF--IEMLHAASACPA----DQHTAACALKSCSRMCAL 136
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
++G + A K G + +V ++L++MY S G + + +FD E +V WN ++
Sbjct: 137 DVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAY 196
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+K G+ W +++ + M A E+T+++V+ A + G
Sbjct: 197 LKNGD------------------WMEVVEMFKGMLEVGVAF---DEVTLVSVVTACGRIG 235
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + + G+ ++ G A + ++ L+D YAKCG I A +LF+ ++ +++V+W++
Sbjct: 236 DAKLGKWVAGHVDEEGL-ARNPKLVTALMDMYAKCGEIGKARRLFD--GMQSRDVVAWSA 292
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGGLHYGCLVDMLGRAGR 323
+ISG+ + A+ F MQ ++PN VT +SVL+AC+ G L G V R R
Sbjct: 293 MISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKR 352
Query: 324 L 324
L
Sbjct: 353 L 353
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 190/343 (55%), Gaps = 41/343 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++++ YV G ++D+ LFD +P R++VTW MI G K G + A++LF++MP R+VVS
Sbjct: 261 SMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVS 320
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + N+ + + E P E T++ VL AI Q G + +H Y
Sbjct: 321 YNSMMAGYVQ-NKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 379
Query: 216 -GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
EK+ F + V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+
Sbjct: 380 IVEKQFFLGGKLGVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGL 435
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G++A + ++++ +KP+ +TF+ VLNACSH GL HYG
Sbjct: 436 GESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 495
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+VD+L R+G +E A+ + +P E D V+ R L AC+ H E GE V + ++
Sbjct: 496 CMVDILSRSGSIELAKNLIQEMPIEPND-VIWRTFLTACNHHKEFETGELVGKHLILQAG 554
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G++ D R+R +M ER K PG S +
Sbjct: 555 YNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWI 597
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 180/381 (47%), Gaps = 57/381 (14%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ +S PK+A LL+ + + D F+ S +++ C L +
Sbjct: 91 FLWNAVIKSHSHGKDPKQALLLFCLMLENGVS--------VDKFSMSLVLKACSRLGFVK 142
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H ++ K G S +++ L+ +Y+ G L + ++FD +P+R+ V++N MI G V
Sbjct: 143 GGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYV 202
Query: 146 KWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
K G +E AR LF+ MP +N++SW I+ GY + S+G + + A +P +
Sbjct: 203 KRGLIESARELFDLMPREVKNLISWNSIISGYAQT--SDGVDIASN---LFAEMP---EK 254
Query: 204 GAVRNCQLIHGY-------GEKRGFNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ +I GY K F+A D+ +ID YAK G + A LF+ +
Sbjct: 255 DLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMP 314
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH------ 306
+++VS+ S+++G+ + A+E F M+K L P+ T + VL+A +
Sbjct: 315 --HRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSK 372
Query: 307 ---------------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
GG L+DM + G ++ A + GI ++ D ++G
Sbjct: 373 AMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSID--HWNAMIGGL 430
Query: 352 SFHGNVEMGERVTRKVLEMER 372
+ HG +GE +L++ER
Sbjct: 431 AIHG---LGESAFDMLLQIER 448
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 100/245 (40%), Gaps = 29/245 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ Y +A ++ +++ S L P D T ++ L +
Sbjct: 321 YNSMMAGYVQNKYHMEALEIFSDMEK-----ESHLSP--DETTLVIVLSAIAQLGRLSKA 373
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I + F + AL++MY G ++ + +F+ + +++ WN MI GL
Sbjct: 374 MDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIH 433
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A + ++ R++ +P +IT + VL A +G V+
Sbjct: 434 GLGESAFDMLLQIERRSI---------------------KPDDITFVGVLNACSHSGLVK 472
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
L ++ ++ C++D ++ G I A L +++ +E N V W + ++
Sbjct: 473 EGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIE-PNDVIWRTFLT 531
Query: 268 GFAMH 272
H
Sbjct: 532 ACNHH 536
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 219/447 (48%), Gaps = 72/447 (16%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQ---------------- 53
++H+H++ N L ++ N LL+ Y+ + A+ L+ L
Sbjct: 21 QVHAHVVA-NGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79
Query: 54 -IYTHSHSPLRPLF------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106
+ ++ R L D++T F+IRTC + +G +H V+ K G S +V
Sbjct: 80 GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
+LV+MY ++D+ +LF+ + ++LVTW VMI E + LF+ M VV
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREEGVV 198
Query: 167 SWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
P ++ ++ V+ A + GA+ + + Y + GF + D+
Sbjct: 199 ---------------------PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGF-SLDV 236
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ +ID YAKCG + SA ++F+ ++ KN++SW+++I+ + HG GK A++ F M
Sbjct: 237 ILGTAMIDMYAKCGSVESAREVFD--RMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMML 294
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
+ PNRVTF+S+L ACSH GL HY C+VD+LGRAGRL
Sbjct: 295 SCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRL 354
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
++A ++ + E D + LLGAC H +E+ E+ +LE++ N G YVL+ NI
Sbjct: 355 DEALRLIEAMTVE-KDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNI 413
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPG 411
A G++ + R +M +R K PG
Sbjct: 414 YAKAGKWEKVAKFRDMMTQRKLKKIPG 440
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 196/387 (50%), Gaps = 41/387 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T + +I C +LS +G ++HA + K+ ++ + ++ A V+MY +K++ +
Sbjct: 252 DEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFI 311
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD +P RN++ M++G + AR +F +M RNVVSW ++ GYT+ + A
Sbjct: 312 FDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEAL 371
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-----AFDIRVSN 230
S P+ T +L A + H + K GF DI V N
Sbjct: 372 SLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGN 431
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LID Y KCGC+ +F + +ER + VSW ++I GFA +G G A+E F M G
Sbjct: 432 SLIDMYVKCGCVEEGYLVFRKM-MER-DCVSWNAMIIGFAQNGYGNEALELFREMLDSGE 489
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ +T + VL+AC H G HY C+VD+LGRAG LE+A+
Sbjct: 490 KPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAK 549
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
I +P + D V+ LL AC H N+ +G+ V K+ E+E N G YVL+ N+ A +
Sbjct: 550 SIIEEMPVQ-PDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAEL 608
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
G++ DA +R++M + K PG S +
Sbjct: 609 GKWGDAMNVRKLMRKEGVTKQPGCSWI 635
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 137/250 (54%), Gaps = 16/250 (6%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQ-LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
S ++ L+ +C+ L + + +HA + K GF + V++ L++ Y G L+D +LF
Sbjct: 19 SSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLF 78
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D++P+RN+ TWN ++TGL K G L+ A SLF MP R+ +W ++ G+ + +R A
Sbjct: 79 DKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALY 138
Query: 185 --------STEPSEITILAVLPAIWQ-NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+E T + L A N R Q IH K + D+ + + L+D
Sbjct: 139 YFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQ-IHSLIAKSPCLS-DVYIGSALVDM 196
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCG + A ++F+++ +N+VSW S+I+ + +G A++ F+ M + ++P+ V
Sbjct: 197 YSKCGNVNDAQQVFDEMG--DRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEV 254
Query: 296 TFLSVLNACS 305
T SV++AC+
Sbjct: 255 TLASVISACA 264
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 62/337 (18%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
+ + +T++ + C L+ N G Q+H++I+K S VY+ +ALV+MY G + D+ +
Sbjct: 149 VLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQ 208
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FDE+ +RN+V+WN +IT + G A +F+ M + SW
Sbjct: 209 VFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVM----LESW---------------- 248
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E+T+ +V+ A A++ Q +H K DI +SN +D YAKC I
Sbjct: 249 -VEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKE 307
Query: 245 ALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMG 275
A +F+ + + +N+VSW ++I+G+ +G
Sbjct: 308 ARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGEN 367
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--CLVDMLGRAGRLEQAEKIAL 332
+ A+ F +++ + P TF ++L AC+ LH G V +L + + E+ +
Sbjct: 368 EEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDI 427
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+ + + D+ V+ C G VE G V RK++E
Sbjct: 428 FVGNSLIDMYVK------C---GCVEEGYLVFRKMME 455
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 49/376 (13%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP + F++S +++ C LS P G Q+++ K+G S V +L++MY G ++D
Sbjct: 350 IRP--NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 407
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K FD L E+NLV++N ++ G K + E A LF E ++ TGI
Sbjct: 408 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE------IADTGI---------- 451
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
S T ++L GA+ + IHG K G+ + + N LI Y++CG
Sbjct: 452 -----GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGN 505
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I +A ++F ++ E +N++SWTS+I+GFA HG A+E F +M + G KPN +T+++VL
Sbjct: 506 IEAAFQVFNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 563
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH G+ HY C+VD+LGR+G L +A + +P +
Sbjct: 564 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL-MA 622
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D +V R LLGAC HGN E+G +LE E + Y+L+ N+ A G++ D ++R+
Sbjct: 623 DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRK 682
Query: 400 VMDERNALKFPGRSLV 415
M ERN +K G S +
Sbjct: 683 SMKERNLIKEAGCSWI 698
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 136/290 (46%), Gaps = 51/290 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVS-LGFLKDSSK 124
+ + ++ +IR C +Y +G ++ + K G+ ++ V V L++M+V G L + K
Sbjct: 145 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 204
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD++PERNLVTW +MIT + G A LF +M L GY
Sbjct: 205 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME----------LSGYV-------- 246
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC---GC 241
P T +VL A + G + + +H + G A D+ V L+D YAKC G
Sbjct: 247 ---PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADGS 302
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHG-MGKAAVENFERMQKVGLKPNRVTFLSV 300
+ + K+FE + N++SWT+II+ + G K A+E F +M ++PN +F SV
Sbjct: 303 VDDSRKVFEQMP--EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 360
Query: 301 LNACSH-----------------GGLHYGC----LVDMLGRAGRLEQAEK 329
L AC + G C L+ M R+GR+E A K
Sbjct: 361 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARK 410
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 139/305 (45%), Gaps = 34/305 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D TYS L+++C+ LG +H + + G + V L+++Y G + + +F
Sbjct: 43 DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 102
Query: 127 DELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
+ + +R+LV+W+ M++ N + W I +T ++
Sbjct: 103 EGMGNKRDLVSWSAMVSCFAN-----------------NSMEWQAI---WTFLDMLE-LG 141
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK-CGCIFS 244
P+E AV+ A ++I+G+ K G+ D+ V LID + K G + S
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 201
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A K+F+ + +NLV+WT +I+ FA G + A++ F M+ G P+R T+ SVL+AC
Sbjct: 202 AYKVFDKMP--ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259
Query: 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
+ GL G+ + I LG+ ++ + C+ G+V+ +V
Sbjct: 260 TELGLL---------ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 310
Query: 365 RKVLE 369
++ E
Sbjct: 311 EQMPE 315
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 203/410 (49%), Gaps = 46/410 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ +++ Y D +A LL+K+ + S D ++ C +S ++
Sbjct: 221 WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSIT 280
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + K GF+ + V L++ Y G L S ++FD + ER++++WN +I +
Sbjct: 281 EGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQN 340
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + +F M + DG N +T+ AVL A +G+ R
Sbjct: 341 GMSTESMEIFHRM----------VKDGEINYN----------AVTLSAVLLACAHSGSQR 380
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IH K G + ++ V +ID Y KCG + A K F+ + KN+ SW+++++
Sbjct: 381 LGKCIHDQVIKMGLES-NVFVGTSIIDMYCKCGKVEMARKAFD--RMREKNVKSWSAMVA 437
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+ MHG K A+E F M G+KPN +TF+SVL ACSH GL
Sbjct: 438 GYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVE 497
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VD+LGRAG L++A + G+ D VV LLGAC H NV++GE R
Sbjct: 498 PGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR-PDFVVWGALLGACRMHKNVDLGEISAR 556
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K+ E++ N G YVL+ NI A GR+ D ER+R +M +K PG SLV
Sbjct: 557 KLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLV 606
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 156/302 (51%), Gaps = 31/302 (10%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+ I++C L + G Q H GF+ ++V++ALV+MY G L+D+ LFDE+
Sbjct: 154 TFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 213
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-ASTEP 188
RN+V+W MITG V+ + A LF+E +V +G + +G +P
Sbjct: 214 SHRNIVSWTSMITGYVQNDDAHRALLLFKEF----LVEESG--------SEGDGEVCVDP 261
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
I +++VL A + + +HG+ KRGF D+ V N L+D YAKCG + + ++
Sbjct: 262 --IAMVSVLSACSRVSEKSITEGVHGFLIKRGFEG-DLGVENTLMDAYAKCGELGVSRRV 318
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHG 307
F+ ++ ++++SW SII+ +A +GM ++E F RM K G + N VT +VL AC+H
Sbjct: 319 FDGMA--ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHS 376
Query: 308 GLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
G R G+ + I +G+ S + V I+ C G VEM + ++
Sbjct: 377 GSQ---------RLGKCIHDQVIKMGLESNV--FVGTSIIDMYCKC-GKVEMARKAFDRM 424
Query: 368 LE 369
E
Sbjct: 425 RE 426
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 21/98 (21%)
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----HGG 308
V++ N+ SW S+I+ A G A+ F M+K+ LKPNR TF + +CS H G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171
Query: 309 -------LHYG---------CLVDMLGRAGRLEQAEKI 330
L +G LVDM + G L A +
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTL 209
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 212/420 (50%), Gaps = 55/420 (13%)
Query: 19 NSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC 78
++ ++ LF+T++ Y+ + K + Y L Y SP + + + F+++ C
Sbjct: 67 DARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGY--GISP-----NKYAFPFVLKAC 119
Query: 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL-GFLKDSSKLFDELPERNLVTW 137
L NLG +H + K GF ++V +V+MY G ++ + KLFDE+P+ + VTW
Sbjct: 120 AGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTW 179
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
MI G + G+ A LF +M V P ++T+++VL
Sbjct: 180 TAMIGGYARLGQSAGAVGLFRKMQIAGVC---------------------PDDVTMVSVL 218
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A GA+ + I Y EK + +SN L+D +AKCG + AL LF ++S ++
Sbjct: 219 SACTDLGALELGKWIESYIEKERVLK-TVELSNALVDMFAKCGDVDKALGLFRNMS--KR 275
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+VSWTS+I G AMHG G AV FE M+ G+ P + F+ +L+ACSH GL
Sbjct: 276 TIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYF 335
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+L RAG + +A + +P E + ++ R L+ AC HG
Sbjct: 336 SEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIE-PNPIIWRTLISACRVHG 394
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++GE ++++++ E + +YVL+ NI + + ++R M ++ K PG +++
Sbjct: 395 ELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMI 454
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 51/279 (18%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
+++ C TL P L QLH I K+GFQ++ V T + +L + + L + +
Sbjct: 13 ILQACNTL--PKLA-QLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDAR 69
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
+ + T + + E ++ N + + ++ GY P++
Sbjct: 70 VYDAFLFSTIIRAYAESSQSK--------HNAIFYYNLMLGY---------GISPNKYAF 112
Query: 194 LAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKC-GCIFSALKLF 249
VL A +R+ L +HG K GF+ DI V N ++ Y C G + A KLF
Sbjct: 113 PFVLKAC---AGLRDLNLGKAVHGSLVKFGFDD-DIFVQNTMVHMYCCCSGGMEFARKLF 168
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GG 308
+++ + + V+WT++I G+A G AV F +MQ G+ P+ VT +SVL+AC+ G
Sbjct: 169 DEMP--KLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGA 226
Query: 309 LHYG--------------------CLVDMLGRAGRLEQA 327
L G LVDM + G +++A
Sbjct: 227 LELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKA 265
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 212/442 (47%), Gaps = 59/442 (13%)
Query: 13 SHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH--------------- 57
SHLL T+S T F H P LY L TH
Sbjct: 41 SHLLNTSSKFASTYAFTIFNHI------PNPTLFLYNTLISSLTHHSDQIHLAFSLYNHI 94
Query: 58 -SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVS 115
+H L+P +SFT+ L + C + + G LHA V+ + +V +L+N Y
Sbjct: 95 LTHKTLQP--NSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAK 152
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
G L S LFD++ E +L TWN M+ + + FE+ L+
Sbjct: 153 YGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMS--------LEAL 204
Query: 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+ +P+E+T++A++ A GA+ HGY + + V L+D
Sbjct: 205 HLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLK-LNRFVGTALVDM 263
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCGC+ A +LF+++S ++ + ++I GFA+HG G A+E + M+ L P+
Sbjct: 264 YSKCGCLNLACQLFDELS--DRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGA 321
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
T + + ACSHGGL HYGCL+D+LGRAGRL++AE+
Sbjct: 322 TIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQD 381
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + + ++ R LLGA HGN+EMGE + ++E+E G+YVL+ N+ A +GR+ D
Sbjct: 382 MPMK-PNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWND 440
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+R+R +M + K PG SLV
Sbjct: 441 VKRVRMLMKDHGVDKLPGFSLV 462
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 218/429 (50%), Gaps = 58/429 (13%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+ +L + S +N L+ Y+ DSP++A Y +++ + SP D T+
Sbjct: 71 HARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGI---SP-----DKLTF 122
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
L++ C +S N G ++ + K G +VYV +++ Y S ++D+ ++FDE+
Sbjct: 123 PILLKACAXISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSY 182
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
R +V+WN +++ V L + LF +M G+ +P E
Sbjct: 183 RTVVSWNAVLSACVDNEWLNDSFGLFVKM---------------------RGSGFDPDET 221
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T++ +L A + G + + +H ++G + R+ L+D YAKCG + A +F
Sbjct: 222 TMVILLSACSELGNLSFGRWVHSQVIEKGM-VVNCRLGTALVDMYAKCGAVCEASLVFHR 280
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +ER N+ +W+++I G A HG K A+E F +M++ + PN VTFL VL ACSH GL
Sbjct: 281 M-LER-NVWTWSAMILGLAQHGFAKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVD 338
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYG +VD+L RAGRL++A L +P E D VV R LL
Sbjct: 339 DGYRFFHDMEYVHGIEPMMIHYGAMVDILSRAGRLKEAYNFILNMPVE-ADPVVWRTLLS 397
Query: 350 ACSFHG---NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
AC+ HG N +G++V +++LE+E G++V++ N+ A VG++ A +RR M +
Sbjct: 398 ACTIHGINDNDGVGDKVRKRLLELEPRRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGL 457
Query: 407 LKFPGRSLV 415
K G S +
Sbjct: 458 KKMAGESCI 466
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 12/175 (6%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP-AIWQNGAV 206
G L +AR L V SW ++ Y + A E+ L + P + +
Sbjct: 67 GNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILL 126
Query: 207 RNCQLIHGYGEKRGFNA--------FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
+ C I + E R ++ V N +I Y C I A ++F+++S +
Sbjct: 127 KACAXISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSY--RT 184
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
+VSW +++S + + F +M+ G P+ T + +L+ACS G L +G
Sbjct: 185 VVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFG 239
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 190/340 (55%), Gaps = 43/340 (12%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++V + G L + K+FDE+P RNLV+WN M+ G +++ AR LF+ MP ++VVS
Sbjct: 231 SMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVS 290
Query: 168 WTGILDGYTRMNR-----------SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
WT ++ GY + R ++ +P+E+T+++VL A A+ + +H +
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 350
Query: 217 EKRGF---NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
+K N +++ + LID YAKCG A+K+F S++RKN+ +W ++I+ AM+G
Sbjct: 351 DKHKMVLNNEYNLGAA--LIDMYAKCGRTDIAVKIFN--SLDRKNVSAWNALITRLAMNG 406
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
+ +V+ FE+M++ G KPN +TF+ VL ACSHGGL HY
Sbjct: 407 NAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHY 466
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV--LE 369
GC+VDMLGRAG LE+AE++ +P DV+V LLGAC H ++ ERV ++ L
Sbjct: 467 GCMVDMLGRAGLLEEAEELIRSMPMA-PDVMVFGALLGACRMHKRFDVAERVQSEIHSLN 525
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+ G +VL+ +I A G++ D R+V+ K+
Sbjct: 526 LNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKW 565
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 174/366 (47%), Gaps = 67/366 (18%)
Query: 12 HSHLLTTNSLLHH--------TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
H HL +H T L N L+ + + SP+ +F + L + L
Sbjct: 38 HPHLAAALCAVHFPLFPSSSATFLHNILIRASASSASPRLSFAAFSSLLRC------GLV 91
Query: 64 PLFDSFTYSFLIRTCVTL-SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
P D FT L+ + L ++P G Q+HA + GF + V+V AL+ MY G L+D+
Sbjct: 92 P--DRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMY---GALRDA 146
Query: 123 SKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ + + ++V+WN +I G VK GE+E A+ +F+EMP RN VSW+ ++ GY
Sbjct: 147 ASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAA 206
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIR--VS 229
+ A + +PAI +N N ++ G+ ++ F+ +R VS
Sbjct: 207 GELDVAR------EMFDRMPAIGRNVVTWN-SMVTGFARHGLLPLARKMFDEMPVRNLVS 259
Query: 230 -NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-K 287
N ++ Y+ + A +LF D+ E K++VSWT +ISG+A G + +E F MQ +
Sbjct: 260 WNAMLRGYSVNSDMDGARELF-DVMPE-KDVVSWTCMISGYAQAGRYQDTLELFRAMQTE 317
Query: 288 VGLKPNRVTFLSVLNACSH-GGLHYG----------------------CLVDMLGRAGRL 324
++PN VT +SVL+AC++ L G L+DM + GR
Sbjct: 318 SNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRT 377
Query: 325 EQAEKI 330
+ A KI
Sbjct: 378 DIAVKI 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 104/250 (41%), Gaps = 37/250 (14%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ ++ Y+ A + L++ +Q + S ++P + T ++ C L+ G
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQ-----TESNVQP--NEVTMVSVLSACANLTALEEG 343
Query: 88 TQLHAVISK--VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+HA I K + + + AL++MY G + K+F+ L +N+ WN +IT L
Sbjct: 344 RWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLA 403
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G + + +D + +M R+ +P++IT + VL A G
Sbjct: 404 MNGNAQDS------------------VDAFEQMKRTG---EKPNDITFVGVLTACSHGGL 442
Query: 206 V---RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
V R C G +++ C++D + G + A +L + + +++ +
Sbjct: 443 VDEGRRC--FQSMASTCGVQP-EVKHYGCMVDMLGRAGLLEEAEELIRSMPMA-PDVMVF 498
Query: 263 TSIISGFAMH 272
+++ MH
Sbjct: 499 GALLGACRMH 508
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 218/429 (50%), Gaps = 58/429 (13%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H+ +L + S +N L+ Y+ DSP++A Y +++ + SP D T+
Sbjct: 712 HARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGI---SP-----DKLTF 763
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
L++ C +S N G ++ + K G +VYV +++ Y S ++D+ ++FDE+
Sbjct: 764 PILLKACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSY 823
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
R +V+WN +++ V L + LF +M G+ +P E
Sbjct: 824 RTVVSWNAVLSACVDNEWLNDSFGLFVKM---------------------RGSGFDPDET 862
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T++ +L A + G + + +H ++G + R+ L+D YAKCG + A +F
Sbjct: 863 TMVILLSACSELGNLSFGRWVHSQVIEKGM-VVNCRLGTALVDMYAKCGAVCEASLVFHR 921
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +ER N+ +W+++I G A HG K A+E F +M++ + PN VTFL VL ACSH GL
Sbjct: 922 M-LER-NVWTWSAMILGLAQHGFAKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVD 979
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYG +VD+L RAGRL++A L +P E D VV R LL
Sbjct: 980 DGYRFFHDMEYVHGIEPMMIHYGAMVDILSRAGRLKEAYNFILNMPVE-ADPVVWRTLLS 1038
Query: 350 ACSFHG---NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
AC+ HG N +G++V +++LE+E G++V++ N+ A VG++ A +RR M +
Sbjct: 1039 ACTIHGINDNDGVGDKVRKRLLELEPRRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGL 1098
Query: 407 LKFPGRSLV 415
K G S +
Sbjct: 1099 KKMAGESCI 1107
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSNGASTEPSEITILA 195
G L +AR L V SW ++ Y + RS G S P ++T
Sbjct: 708 GNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGIS--PDKLTFPI 765
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
+L A A + I K G + ++ V N +I Y C I A ++F+++S
Sbjct: 766 LLKACAAISAFNEGRKIQVDVMKHGLDC-NVYVQNTMIHFYGSCKRIRDARRMFDEMSY- 823
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
+ +VSW +++S + + F +M+ G P+ T + +L+ACS G L +G
Sbjct: 824 -RTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFG 880
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 188/353 (53%), Gaps = 43/353 (12%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL-PERNLVTWNVMITGL 144
L ++H + + G V ALV+MY G + + F + P +NLVTWN MI+
Sbjct: 182 LAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAH 241
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ GEL+ A LF EM + +S P + T +AVL A + G
Sbjct: 242 ARAGELQEALELFREM----------------LQQQGCTSSPLPDDATFVAVLGACARLG 285
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ + +H Y + G +A V N LID YAKCG + A ++F+ ++ R+++ ++TS
Sbjct: 286 ALDAGRWVHAYIVRTGRDAAAGVVGNALIDMYAKCGAVEQAAEVFD--AMTRRDVYTYTS 343
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG---------------- 308
+ISG AMHG G+ A+ F M++ ++PN VTFL VL+AC H G
Sbjct: 344 MISGLAMHGRGEEALALFGDMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELH 403
Query: 309 ------LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+VDMLGRAGRL++AE++ +P D ++ LL AC HG+V+ ER
Sbjct: 404 GVTPGIEHYGCVVDMLGRAGRLDEAEELVSVMPIR-PDAIIWGSLLAACRAHGHVDRAER 462
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V R++ E E + GDYVLM N+ A GR+ A ++RR M K PG SL+
Sbjct: 463 VMRRMAEDE-DDAGDYVLMSNMYAQEGRHGKAVQVRRQMRRGKVDKVPGCSLI 514
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 156/413 (37%), Gaps = 115/413 (27%)
Query: 72 SFLIRTCVTLSYP-NLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
+ L R T S P LHA +K+G ++ H V ALV +Y++ G +S LF
Sbjct: 61 AVLKRLAATASAPCEAAPALHAHSAKLGLYRHHRGVRDALVALYLACGRRGVASDLF--- 117
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+ P +VVSWT ++ + R+ G E +
Sbjct: 118 -------------------------AGAGGGPAPDVVSWTAMVTWHARL----GLFREAA 148
Query: 190 EITILAVLPAIWQNGAVRN----------------CQLIHGYGEKRGFNAFDIRVSNCLI 233
E+ LA+ + +H + G A D+ N L+
Sbjct: 149 EL-FLAMADDGAVVVDAVAAAAAFAACAGAGELVLAREVHRRVLEAGV-ALDVVACNALV 206
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLK- 291
D YAKCG +AL+ F + V KNLV+W ++IS A G + A+E F M Q+ G
Sbjct: 207 DMYAKCGDSAAALRCFRTM-VPTKNLVTWNTMISAHARAGELQEALELFREMLQQQGCTS 265
Query: 292 ---PNRVTFLSVLNACSH-GGLHYG---------------------CLVDMLGRAGRLEQ 326
P+ TF++VL AC+ G L G L+DM + G +EQ
Sbjct: 266 SPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVGNALIDMYAKCGAVEQ 325
Query: 327 AEKI---------------------------ALGIPSEITDVVVRR------ILLGACSF 353
A ++ AL + ++ VR +L AC
Sbjct: 326 AAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVTFLGVLSACCH 385
Query: 354 HGNVEMGERVTRKVLEMERGNGG--DYVLMYNILAGVGRYVDAERLRRVMDER 404
GN+E G R + E+ G Y + ++L GR +AE L VM R
Sbjct: 386 AGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEELVSVMPIR 438
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 230/468 (49%), Gaps = 68/468 (14%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADS---PKKAFLLYKQ---------------- 50
+IH H++ + L L+N+L+ FY S +K F + Q
Sbjct: 150 QIHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQ 209
Query: 51 ------LQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG--FQSH 102
L+ Y + P D +T L+ C LS LG +H I + G + S+
Sbjct: 210 GFGLEALELYYKMVSDGIEP--DEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSN 267
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+ + AL++MY + + FD L ++++ +WN M+ G V+ G++E A+++F++MP
Sbjct: 268 LILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQ 327
Query: 163 RNVVSWTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQ 210
R++VSW +L Y++ A E P +T+++++ NG + + +
Sbjct: 328 RDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGR 387
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
+HG + D +S+ LID Y KCG I A +F+ + K++ WTS+I+GFA
Sbjct: 388 WVHGLMIRLQLEG-DAFLSSALIDMYCKCGLIERAFMVFK--TATEKDVPLWTSMITGFA 444
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------------- 309
HG G+ A++ F+RMQ+ + PN+VT L+VL ACSH GL
Sbjct: 445 FHGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPET 504
Query: 310 -HYGCLVDMLGRAGRLEQAEKIALG-IPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYG LVD+L RAGRLE+A+ I +P + + I L AC ++E E ++
Sbjct: 505 EHYGSLVDLLCRAGRLEEAKDIVQNKMPMRPSQSMWGSI-LSACREGEDIETAELALSEL 563
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L++E G YVL+ NI A VGR+ +++ R M+ R K G S V
Sbjct: 564 LKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMESRGVKKTAGYSSV 611
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 216/408 (52%), Gaps = 44/408 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N++++ Y+ A + ++A L++ +++ L D FT L+ C G
Sbjct: 179 WNSMINGYAQAGNTREACSLFEGMRRQGL--------LADEFTLVSLLFACSAEGNLEFG 230
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+ + G + + + ALV+MY G L + FD +P +N V+W M+ L K
Sbjct: 231 KLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKR 290
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVL 197
++ AR FE++P ++++SW ++ Y + NR P E T+ AVL
Sbjct: 291 ASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVL 350
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q G + + ++IH + F+ + + N L+D YA+CG + +A+ LF ++ K
Sbjct: 351 SACGQLGDLASGKMIHDC-IRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP--SK 407
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N++SW +II AMHG + A+ F M P+ +TF+++L+AC+HGGL
Sbjct: 408 NVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYF 467
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+LGR G+L +A + +P DVVV LLGAC HG
Sbjct: 468 QAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMR-PDVVVWGALLGACRIHG 526
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
++++G++V +++LE+E +GG +VL+ N+L ++ D +RLR++M E
Sbjct: 527 HIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMRE 574
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 165/380 (43%), Gaps = 86/380 (22%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLR--PLF----------DSFTYSFLIRTCVTLSYPNLGT 88
P +Y L + Y +SH P PL + FT FL++ C +
Sbjct: 71 PDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVM 130
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
H V+ K+GF V+V AL++ Y S G L DS + FDE+ +RN+V+WN MI G + G
Sbjct: 131 VTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAG 190
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
A SLFE M + +++ E T++++L A G +
Sbjct: 191 NTREACSLFEGMRRQGLLA---------------------DEFTLVSLLFACSAEGNLEF 229
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI---------------- 252
+L+H + RG D+ ++N L+D Y KCG + A F+ +
Sbjct: 230 GKLVHSHLLVRGCR-IDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288
Query: 253 -------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
+ K+++SW ++IS + G A++ + RM+ +GL P+ T +
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348
Query: 300 VLNACSH------GGLHYGC---------------LVDMLGRAGRLEQAEKIALGIPSEI 338
VL+AC G + + C L+DM R G+++ A + +PS+
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSK- 407
Query: 339 TDVVVRRILLGACSFHGNVE 358
+V+ ++GA + HG +
Sbjct: 408 -NVISWNAIIGALAMHGRAQ 426
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 190/340 (55%), Gaps = 43/340 (12%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++V + G L + K+FDE+P RNLV+WN M+ G +++ AR LF+ MP ++VVS
Sbjct: 231 SMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVS 290
Query: 168 WTGILDGYTRMNR-----------SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
WT ++ GY + R ++ +P+E+T+++VL A A+ + +H +
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 350
Query: 217 EKRGF---NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
+K N +++ + LID YAKCG A+K+F S++RKN+ +W ++I+ AM+G
Sbjct: 351 DKHKMVLNNEYNLGAA--LIDMYAKCGRTDIAVKIFN--SLDRKNVSAWNALITRLAMNG 406
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
+ +V+ FE+M++ G KPN +TF+ VL ACSHGGL HY
Sbjct: 407 NARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHY 466
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV--LE 369
GC+VDMLGRAG LE+AE++ +P DV+V LLGAC H ++ ERV ++ L
Sbjct: 467 GCMVDMLGRAGLLEEAEELIRSMPMA-PDVMVFGALLGACRMHKRFDVAERVQSEIHSLN 525
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+ G +VL+ +I A G++ D R+V+ K+
Sbjct: 526 LNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKW 565
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 172/366 (46%), Gaps = 67/366 (18%)
Query: 12 HSHLLTTNSLLHH--------TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
H HL +H T L L+ + + SP +F + L + L
Sbjct: 38 HPHLAAALCAVHFPLFPSSSATFLQKILIRASASSASPGLSFAAFSSLLRC------GLV 91
Query: 64 PLFDSFTYSFLIRTCVTL-SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
P D FT L+ + L ++P G Q+HA + GF + V+V AL+ MY G L+D+
Sbjct: 92 P--DRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMY---GALRDA 146
Query: 123 SKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ + + ++V+WN +I G VK GE+E A+ +F+EMP RN VSW+ ++ GY
Sbjct: 147 ASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAA 206
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIR--VS 229
+ A + +PAI +N N ++ G+ ++ F+ +R VS
Sbjct: 207 GELDVAR------EMFDRMPAIGRNVVTWN-SMVTGFARHGLLPLARKMFDEMPVRNLVS 259
Query: 230 -NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-K 287
N ++ Y+ + A +LF D+ E K++VSWT +ISG+A G + +E F MQ +
Sbjct: 260 WNAMLRGYSVNSDMDGARELF-DVMPE-KDVVSWTCMISGYAQAGRYQDTLELFRAMQTE 317
Query: 288 VGLKPNRVTFLSVLNACSH-GGLHYG----------------------CLVDMLGRAGRL 324
++PN VT +SVL+AC++ L G L+DM + GR
Sbjct: 318 SNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRT 377
Query: 325 EQAEKI 330
+ A KI
Sbjct: 378 DIAVKI 383
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 37/250 (14%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ ++ Y+ A + L++ +Q + S ++P + T ++ C L+ G
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQ-----TESNVQP--NEVTMVSVLSACANLTALEEG 343
Query: 88 TQLHAVISK--VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+HA I K + + + AL++MY G + K+F+ L +N+ WN +IT L
Sbjct: 344 RWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLA 403
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G R+ V D + +M R+ +P++IT + VL A G
Sbjct: 404 MNGN------------ARDSV------DAFEQMKRTG---EKPNDITFVGVLTACSHGGL 442
Query: 206 V---RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
V R C G +++ C++D + G + A +L + + +++ +
Sbjct: 443 VDEGRRC--FQSMASTCGVQP-EVKHYGCMVDMLGRAGLLEEAEELIRSMPMA-PDVMVF 498
Query: 263 TSIISGFAMH 272
+++ MH
Sbjct: 499 GALLGACRMH 508
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 199/380 (52%), Gaps = 37/380 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F + +I C L QLH++ K G V ++ +L++MY G L+++ +F
Sbjct: 394 DQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIF 453
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------MN 179
+ ER++V+W M+T + G + AR F+ M RNV++W +L Y + +
Sbjct: 454 SSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLK 513
Query: 180 RSNGASTE----PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+ TE P +T + + GA + I G+ K G D V N +I
Sbjct: 514 MYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGL-ILDTSVMNAVITM 572
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCG I A K+F+ +S RK+LVSW ++I+G++ HGMGK A+E F+ M K G KP+ +
Sbjct: 573 YSKCGRISEARKIFDFLS--RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYI 630
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
++++VL++CSH GL H+ C+VD+L RAG L +A+ +
Sbjct: 631 SYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDE 690
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + T V LL AC HGN E+ E + + +++ + G Y+L+ I A G+ VD
Sbjct: 691 MPMKPT-AEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVD 749
Query: 394 AERLRRVMDERNALKFPGRS 413
+ ++R++M ++ K PG S
Sbjct: 750 SAQVRKLMRDKGIKKNPGYS 769
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 176/400 (44%), Gaps = 70/400 (17%)
Query: 16 LTTNSLLHHTLLFNTLLHFYSLADS-------PKKAFLLYKQLQQIYTHSHSPLRP---- 64
+T +++ H ++ N SL+D+ P++ + L Y S L
Sbjct: 90 ITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESF 149
Query: 65 ---------LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS 115
L ++FT+ +++C L + + QL +++K GFQ V T +V+M+V
Sbjct: 150 VSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVR 209
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
G + +SK F ++ + N M+ G K +++A LFE MP R+VVSW ++
Sbjct: 210 CGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSAL 269
Query: 176 TRMNRSNGA----------------STEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEK 218
++ R+ A +T S +T A L ++ W G + Q+I
Sbjct: 270 SQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGW--GKQLHAQVI------ 321
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
R D V++ +++ YAKCGC A ++F S+ +N VSWT +I GF +G +
Sbjct: 322 RSLPCIDPYVASAMVELYAKCGCFKEARRVFS--SLRDRNTVSWTVLIGGFLQYGCFSES 379
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSH-------GGLH--------------YGCLVDM 317
+E F +M+ + ++ ++++ CS+ LH L+ M
Sbjct: 380 LELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISM 439
Query: 318 LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
+ G L+ AE I + E D+V +L A S GN+
Sbjct: 440 YAKCGNLQNAESIFSSM--EERDIVSWTGMLTAYSQVGNI 477
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 54/278 (19%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERN 133
+R+C LH + VG S V++ L++ Y+S G L D+ L ++ E N
Sbjct: 35 LRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPN 94
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-----------SN 182
++T N+M+ G K G L A LF MP R+V SW ++ GY + R
Sbjct: 95 VITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRR 154
Query: 183 GASTEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
+ P+ T + + W A+ QL+ G K GF D V+ ++D + +
Sbjct: 155 SGDSLPNAFTFGCAMKSCGALGWHEVAL---QLL-GLLTKFGFQG-DPDVATGIVDMFVR 209
Query: 239 CGCI------FS-------------------------ALKLFEDISVERKNLVSWTSIIS 267
CG + FS AL+LFE S+ +++VSW ++S
Sbjct: 210 CGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFE--SMPERDVVSWNMMVS 267
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+ G + A+ M G++ + T+ S L AC+
Sbjct: 268 ALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACA 305
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 212/401 (52%), Gaps = 48/401 (11%)
Query: 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97
A S KA Y Q+ H P DSF+ F+++ C + + ++ LHA I+K+
Sbjct: 34 APSLHKALAFYSQM-------HRQSVP-HDSFSILFMLKACASSNNLSILHHLHAHITKL 85
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
GF +HV+V T+L++ YV F + + +FDE+P +N VTWN MI+G K G++ AR LF
Sbjct: 86 GFTTHVFVATSLLHSYVLHSF-QLARLVFDEMPHKNSVTWNTMISGYSKAGDVHTARQLF 144
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN-C------- 209
+ MP R++ SW+ ++ Y GA ++ I + P G++ N C
Sbjct: 145 DRMPSRDLASWSAMIAAYINNRNYRGALLLFQDMIINGINPDQMAAGSILNGCAHMGSLG 204
Query: 210 ----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ +HG+ K + ++ + L+D YAKCG + A ++F +S +N+ +WT++
Sbjct: 205 LLAGKSVHGFVVKNRWE-LNLELGTVLVDMYAKCGFLKYACQIFNLMS--ERNVRTWTAL 261
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I G A HG K A+ FE M+ G++PN TF VL+AC H GL
Sbjct: 262 ICGLAHHGCCKEALVLFETMRHEGVEPNEFTFTGVLSACVHAGLVQEGRKYFNMIEECGL 321
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HYGC VD+LGR+G LE+A + + E +V+V LL AC H + ++ ERV
Sbjct: 322 EIRIQHYGCFVDLLGRSGLLEEAYGVIKSMRLE-PNVIVWSSLLSACKQHKSFDLAERVI 380
Query: 365 RKVLE-MERGN-GGDYVLMYNILAGVGRYVDAERLRRVMDE 403
++LE +E N G Y L+ ++ ++ DAE +R ++++
Sbjct: 381 EQILEKIEPDNHAGVYSLVSDLYVLQDKWDDAENIRNLLNQ 421
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 195/371 (52%), Gaps = 51/371 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT+ ++ C L G ++HA + GF +V V ++LV+MY G + +S ++F
Sbjct: 321 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIF 380
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D +P +N V+W+ ++ G + G+ + +F +M ++ + IL
Sbjct: 381 DRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTIL-------------- 426
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
A L A+ Q V +CQ I G + D+ V + L+D YAKCGCI A
Sbjct: 427 -----RTCAGLAAVRQGKEV-HCQYIRKGGWR------DVIVESALVDLYAKCGCIEYAQ 474
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+ + V +NL++W S+I GFA +G G+ A+ F +M K G+KP+ ++F+ +L ACSH
Sbjct: 475 TIFDQMPV--RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSH 532
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VD+LGRAG LE+AE I + D +
Sbjct: 533 RGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE-ILIETSDFRDDSSLW 591
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLGAC+ N E+ ER+ ++V+E+E YVL+ N+ VGR+ DA R+RR+M +R
Sbjct: 592 AALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDR 651
Query: 405 NALKFPGRSLV 415
K PG+S +
Sbjct: 652 GVNKMPGKSWI 662
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 156/324 (48%), Gaps = 49/324 (15%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDEL 129
Y+ L++TC + N G Q+HA + K G + +V +L+ +Y LG ++ K+FD L
Sbjct: 121 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 180
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+++++W MI+G V+ G+ + LF +M V EP+
Sbjct: 181 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGV---------------------EPN 219
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
T+ AV+ A + G ++ ++ HG RGF++ + +++ LID + + + A +LF
Sbjct: 220 AFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDS-NYVIASALIDMHGRNCALDDARQLF 278
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSH-G 307
+++ + + WTSIIS + A+ F MQ+ G+ P+ TF +VL AC + G
Sbjct: 279 DELL--EPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLG 336
Query: 308 GLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
L G LVDM G+ G + ++++I +P I + V L
Sbjct: 337 RLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMP--IKNSVSWSAL 394
Query: 348 LGACSFHGNVEMGERVTRKVLEME 371
LG +G+ + ++ RK+ +++
Sbjct: 395 LGGYCQNGDFKSVIQIFRKMEKVD 418
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 188/366 (51%), Gaps = 38/366 (10%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
N G +HA++ G V+V+T L+ +Y G L S ++FD++P R+ +TWN M+
Sbjct: 132 NPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQY 191
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------------STEPSEI 191
+ G+++ A +F MP R+VVSW +L GY R A + P+
Sbjct: 192 ARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP 251
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ +L A G + +H Y E+ N D + CLID Y KCG I +AL++FE
Sbjct: 252 TMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDRCLIDMYCKCGSIDNALQVFEK 310
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +K+L SWT++I G AMHG A+ F+ MQ G+ P+ VT + VLNAC+HGGL
Sbjct: 311 -APRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVD 369
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC++D+LGR GRL++A + +P + + V+ L
Sbjct: 370 EGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMD-PNTVIWGAFLS 428
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC HGN+E+G+ ++ ++ + V++ ++ A ++ R RR M+ K
Sbjct: 429 ACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKT 488
Query: 410 PGRSLV 415
PG S +
Sbjct: 489 PGCSSI 494
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 144/341 (42%), Gaps = 73/341 (21%)
Query: 87 GTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ +H ++ K G ++ TAL++ Y +LG + +LFDE+PE+ LV M V
Sbjct: 28 ASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHV 87
Query: 146 KWGELEYARSLFEEM-----------------PCRNVVSWTGILDGYTRMNRSNGASTEP 188
G+ A ++F +M C SWT R N
Sbjct: 88 ASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTA---------RRNPGKMIH 138
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIRVS---NCLIDTYAK 238
+ + ++P ++ + +LI YGE +R F+ R + N ++ YA+
Sbjct: 139 ALVVTSGIVPDVFV-----STELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYAR 193
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM---QKVGLKPNRV 295
G + +A ++F +++ R+++VSW ++++G+ + G + A+ F +M + PN
Sbjct: 194 HGKVDTAYEMF--LAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP 251
Query: 296 TFLSVLNACSHGG-LHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T ++L AC+ G L G CL+DM + G ++ A ++
Sbjct: 252 TMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKA 311
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
P + D+ ++ + HG R + +M + NG
Sbjct: 312 PRK-KDLFSWTTVICGLAMHGRTTDALR----MFDMMQDNG 347
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT+L Y +A ++A L++Q+ + + P P T S ++ C G
Sbjct: 215 WNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVP-----TMSTILGACAGAGCLETG 269
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVK 146
+HA I + Y++ L++MY G + ++ ++F++ P +++L +W +I GL
Sbjct: 270 IWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAM 329
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G A +F+ M + NG P ++T++ VL A G V
Sbjct: 330 HGRTTDALRMFD-------------------MMQDNGIC--PDDVTLVGVLNACAHGGLV 368
Query: 207 RNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
L + Y + F I C+ID + G + A + + ++ N V W +
Sbjct: 369 DE-GLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMD-PNTVIWGAF 426
Query: 266 ISGFAMHG---MGKAAVENFERMQ 286
+S +HG +GK A E R+
Sbjct: 427 LSACKVHGNMELGKIAAEELTRLD 450
>gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Vitis vinifera]
Length = 531
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 229/461 (49%), Gaps = 70/461 (15%)
Query: 10 RIHSHLLTTNSLL----------HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH 59
++HS L+T LL TLL+N+L+ Y P K L++ + H
Sbjct: 32 QVHSLLITNGHLLPCSNASNLKWMATLLYNSLIRGYLNFVEPHKTLLIFTHM---LAHQA 88
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNL----GTQLHAVISKVGFQSHVYVNTALVNMYVS 115
P ++ T+ +I+ + S P+L GT LH + K G +++ T+LV +Y
Sbjct: 89 PP-----NNLTFPSIIKKAASCS-PSLAFMIGTPLHTHVIKRGLSHDLFIQTSLVVLYAR 142
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
L + D+ ++F+E+ +V+ N M+ L K G++ A LFE MP R+VVSWT I++G+
Sbjct: 143 LCKVSDACRVFEEISRPCVVSSNAMLDALGKNGDMGSALFLFESMPERDVVSWTSIINGF 202
Query: 176 TRMNRS-----------------NGASTEPSEITILAVLPAIWQ---NGAVRNCQLIHGY 215
R NR +P+E T ++VL + GA+ + IHGY
Sbjct: 203 GR-NRCFEEAIQFFVKMMGHEDVRSCLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGY 261
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
R F + + LI Y K GC+ +A+K+F + V K + +W ++IS A +G
Sbjct: 262 -IIRNEVEFTVFMGTALIALYGKTGCLENAMKIFNGMVV--KGVCTWNAMISSLACNGRE 318
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGG----------------------LHYGC 313
K A++ FE+M+ GL P+ VTF++V+ AC+ +HYGC
Sbjct: 319 KQALDLFEKMKMQGLCPDEVTFVAVITACARSKFVVLGLGFFQSMWCDFGVVPRMVHYGC 378
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+LGRAG LE+A + +P E D V LLGAC HG +E+G V R++LE++
Sbjct: 379 VVDLLGRAGLLEEATEFIKRMPFE-PDATVLGALLGACKVHGAIELGNEVGRRLLELQPH 437
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
+ G YV + NI AG + A R+ M E K P S+
Sbjct: 438 HCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGISKIPAYSM 478
>gi|356542056|ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 595
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 215/439 (48%), Gaps = 94/439 (21%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV---TLS 82
LFNTL+ P + L+++ + S FD +TY+F++ C + S
Sbjct: 194 FLFNTLIRCVQ----PNDSILIFR-------NEFSRGLMFFDEYTYNFVLGACARSPSAS 242
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
+G QLHA+I K G +S++ V T V Y S +++++
Sbjct: 243 TLWVGRQLHALIVKHGVESNIVVPTTKVYFYAS---------------NKDIIS------ 281
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-----------------AS 185
+R +F+EMP R+ V+W ++ GY+ + N +
Sbjct: 282 ----------SRKVFDEMPRRSTVTWNAMITGYSSLKEGNKKYALNALYLFIDMLIDVSG 331
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFS 244
+P+ TI++VL A+ Q G + IHG+ EK D+ + L+D Y+KCGC+ S
Sbjct: 332 IKPTATTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGLVDMYSKCGCLDS 391
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
AL +F + +KN+++WT++ +G A+HG GK ++E +M G+KPN TF S L+AC
Sbjct: 392 ALSVF--WRMNQKNIMTWTAMTTGLAIHGKGKQSLEVLYKMGAYGVKPNEATFTSFLSAC 449
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
HGGL HYGC+VD+LGRAG+LE+A + +P D V
Sbjct: 450 CHGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDLLGRAGKLEEAYDFIMQMPIN-PDAV 508
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGG------DYVLMYNILAGVGRYVDAER 396
+ R LL AC+ HG+V MGE+V + +L++E + DY+ + N+ A ++ D E
Sbjct: 509 IWRSLLAACNIHGDVVMGEKVGKFLLQLEEWSSAESPKSEDYIALSNVYALAEKWDDVET 568
Query: 397 LRRVMDERNALKFPGRSLV 415
+R M ++ L G S V
Sbjct: 569 VRIKMKAKSILNKAGSSAV 587
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 198/364 (54%), Gaps = 47/364 (12%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
++ C + + G LH V+ K+G V +L+NMY LGFL +S+LF+E+P R+
Sbjct: 170 VVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS 229
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
LV+WN M+ G E LF N++ GI P + T+
Sbjct: 230 LVSWNSMVVIHNHNGYAEKGMDLF------NLMKRAGI---------------NPDQATM 268
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+A+L A G R + IH Y + GFNA DI ++ L++ YAK G + ++ +FE+I
Sbjct: 269 VALLRACTDTGLGRQAESIHAYIHRCGFNA-DIIIATALLNLYAKLGRLNASEDIFEEI- 326
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+ ++ ++WT++++G+A+H G+ A++ F+ M K G++ + VTF +L+ACSH GL
Sbjct: 327 -KDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEG 385
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGR+GRLE A ++ +P E + V LLGAC
Sbjct: 386 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS-GVWGALLGAC 444
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
+GNVE+G+ V ++L ++ + +Y+++ NI + G + DA ++R +M ER + PG
Sbjct: 445 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPG 504
Query: 412 RSLV 415
S +
Sbjct: 505 CSFI 508
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 196/436 (44%), Gaps = 89/436 (20%)
Query: 29 NTLLHFYSLADSPKKAFLLYK---QLQQIYTHSHSPLRPLFDSFT----YSFLIRTCVTL 81
+ + F A K FLL K ++I + L P F ++ F I +C ++
Sbjct: 19 HCFISFKKFAHIQKYPFLLCKFFISKRRICNANLFQLSPPFQVYSIVQSLVFAISSCTSV 78
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
SY + +HA + K S ++ LV+MY LG+ +D+ +LFDE+P ++LV+WN ++
Sbjct: 79 SYC---SAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLM 135
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+GL G L L+ + RM +G +P+E+T+L+V+ A
Sbjct: 136 SGLSGRGYL------------------GACLNAFCRMRTESG--RQPNEVTLLSVVSACA 175
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
GA+ + +HG K G + +V N LI+ Y K G + +A +LFE++ V ++LVS
Sbjct: 176 DMGALDEGKSLHGVVVKLGMSG-KAKVVNSLINMYGKLGFLDAASQLFEEMPV--RSLVS 232
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH----------Y 311
W S++ +G + ++ F M++ G+ P++ T +++L AC+ GL +
Sbjct: 233 WNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIH 292
Query: 312 GC-----------LVDMLGRAGRLEQAEKIALGIPS-----------------------E 337
C L+++ + GRL +E I I +
Sbjct: 293 RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIK 352
Query: 338 ITDVVVRR----------ILLGACSFHGNVEMGERVTRKVLEMERGNG--GDYVLMYNIL 385
+ D++V+ LL ACS G VE G++ + E+ R Y M ++L
Sbjct: 353 LFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLL 412
Query: 386 AGVGRYVDAERLRRVM 401
GR DA L + M
Sbjct: 413 GRSGRLEDAYELIKSM 428
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 182/341 (53%), Gaps = 35/341 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A++ Y L ++ +LF +PER++ +WN MITG ++ GEL A LF EM +NV++
Sbjct: 193 AMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVIT 252
Query: 168 WTGILDGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
WT ++ GY + S A +P+ T + VL A + Q IH
Sbjct: 253 WTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMI 312
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
K F VS LI+ Y+KCG + +A K+F+D + +++L+SW +I+ +A HG GK
Sbjct: 313 SKTVFQDSTCVVS-ALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGK 371
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A+ F MQ++G+ N VTF+ +L ACSH GL HY CL
Sbjct: 372 EAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACL 431
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+ GRAGRL++A I G+ E+ + V LL C+ HGN ++G+ V K+L++E N
Sbjct: 432 VDLCGRAGRLKEASNIIEGLGEEVP-LTVWGALLAGCNVHGNADIGKLVAEKILKIEPQN 490
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G Y L+ N+ A VG++ +A +R M + K PG S +
Sbjct: 491 AGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWI 531
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 58/311 (18%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
+ +V TA+VN Y+ +K++ +LF E+P RN+V+WN M+ G + G + A LF
Sbjct: 61 KKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRR 120
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNCQ--- 210
MP RNVVSW I+ + R A + ++ ++ + +NG V + +
Sbjct: 121 MPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALF 180
Query: 211 -------------LIHGYGEKRGFNAF----------DIRVSNCLIDTYAKCGCIFSALK 247
+I GY + R + D+ N +I + + G + A K
Sbjct: 181 DQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEK 240
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH 306
LF ++ + KN+++WT++++G+ HG+ + A+ F +M LKPN TF++VL ACS
Sbjct: 241 LFGEM--QEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSD 298
Query: 307 -GGLHYG--------------------CLVDMLGRAGRLEQAEKI-ALGIPSEITDVVVR 344
GL G L++M + G L A K+ G+ S+ D++
Sbjct: 299 LAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQ-RDLISW 357
Query: 345 RILLGACSFHG 355
++ A + HG
Sbjct: 358 NGMIAAYAHHG 368
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 51/243 (20%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
+ L+P ++ T+ ++ C L+ G Q+H +ISK FQ V +AL+NMY G L
Sbjct: 280 NELKP--NTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGEL 337
Query: 120 KDSSKLFDE--LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
+ K+FD+ L +R+L++WN MI G + A +LF EM V +
Sbjct: 338 HTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCA---------- 387
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN------- 230
+++T + +L A G V + GF FD + N
Sbjct: 388 -----------NDVTFVGLLTACSHTGLV-----------EEGFKYFDEILKNRSIQLRE 425
Query: 231 ----CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFE 283
CL+D + G + A + E + E L W ++++G +HG +GK E
Sbjct: 426 DHYACLVDLCGRAGRLKEASNIIEGLG-EEVPLTVWGALLAGCNVHGNADIGKLVAEKIL 484
Query: 284 RMQ 286
+++
Sbjct: 485 KIE 487
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 59/225 (26%)
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
N+ I+ L + GE++YAR +FEEMP R++ WT ++ GY +
Sbjct: 5 NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKC------------------- 45
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDTYAKCGCIFSALKLFEDIS 253
G +R ++ F+ +D + + +++ Y K + A +LF ++
Sbjct: 46 ------GMIREA--------RKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMP 91
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGC 313
+ +N+VSW +++ G+A +G+ + A++ F RM P R N S +
Sbjct: 92 L--RNVVSWNTMVDGYARNGLTQQALDLFRRM------PER-------NVVS-----WNT 131
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
++ L + GR+E A+++ + DVV ++ + +G VE
Sbjct: 132 IITALVQCGRIEDAQRLFDQMKDR--DVVSWTTMVAGLAKNGRVE 174
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 222/442 (50%), Gaps = 61/442 (13%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPK---KAFLLYKQLQQIYTH 57
SPS + R+ LL TN L+ + +NT++ YS +P +A L+ + Q +T+
Sbjct: 30 SPSGDLNYARL---LLNTNPSLN-SYYYNTIIRAYSHTSNPTHHFQALSLFIFMLQPHTN 85
Query: 58 SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
P D+FTYSF +++C L QLH I+K+GF +Y+ AL++MY +G
Sbjct: 86 VPKP-----DTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIG 140
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
L + ++FD + R++V+W MI G V A LF+ M
Sbjct: 141 ELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRML---------------- 184
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+ +E T+++VL +GA+ + +HG +++G + F V LI Y+
Sbjct: 185 -----EVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGID-FKANVCTALIHMYS 238
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCGC+ SA ++F+D V +++ WT++I G A HGM K A+E F M+ +KP+ T
Sbjct: 239 KCGCLESAREVFDD--VLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTI 296
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL+A + GL H+GC+VD+L + G LE+AE +P
Sbjct: 297 MVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMP 356
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTR--KVLEMERGNGGDYVLMYNILAGVGRYVD 393
+ D V+ R L+ AC H + E ER+ + ++ M + G Y+L N+ A G++ D
Sbjct: 357 MK-PDAVIWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCD 415
Query: 394 AERLRRVMDERNALKFPGRSLV 415
+R +M+++ +K PG S +
Sbjct: 416 KAEVRELMNKKGLVKPPGSSRI 437
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 221/420 (52%), Gaps = 43/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ +A LY+ ++ L F++F+++ ++ CV L L
Sbjct: 163 WNTIVLAYAKQGCFNEAIGLYRDFRR--------LDMGFNAFSFAGVLILCVKLKELQLA 214
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H + GF S++ +++++V+ Y G ++ + LFDE+ +++ W +++G KW
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKW 274
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++ A LF +MP +N VSW+ ++ GY R + + A P + T + L
Sbjct: 275 GDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCL 334
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A A+++ + +HGY + F I VS+ LID Y+KCG + ++ +F + ++
Sbjct: 335 CACASIAALKHGKQVHGYLIRTYFRCNTIVVSS-LIDMYSKCGMLEASCCVFHLMG-NKQ 392
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++V W ++IS A +G G+ A++ F M + GLKP+R+TF+ +L+ACSH GL
Sbjct: 393 DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFF 452
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CL+D+LGRAG + L S D V LLG C H
Sbjct: 453 KAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVN-ELENMSCKPDDRVWSALLGVCRIHN 511
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+E+G +V +V+E++ + YV + ++ A +G++ E++R +MDE+ K G S +
Sbjct: 512 NIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWI 571
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 167/376 (44%), Gaps = 67/376 (17%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L+R C Y G +H + GF+ V L+ MY G ++ K+FD++ R
Sbjct: 68 LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVR 127
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------- 184
NL +WN M+ G K G++ AR LF+ M ++VVSW I+ Y + N A
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187
Query: 185 --STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ + VL + ++ + +HG GF + ++ +S+ ++D YAKCG +
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLS-NLVLSSSIVDAYAKCGEM 246
Query: 243 FSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHG 273
A LF+++ V+ KN VSW+++ISG+A +
Sbjct: 247 RCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HGGL---HYGC------ 313
+G A++ F +M K G+ P + TF S L AC+ HG L ++ C
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366
Query: 314 -LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-E 371
L+DM + G LE A + DVVV ++ A + +G+ GE+ + +M E
Sbjct: 367 SLIDMYSKCGMLE-ASCCVFHLMGNKQDVVVWNTMISALAQNGH---GEKAMQMFNDMVE 422
Query: 372 RGNGGDYVLMYNILAG 387
G D + IL+
Sbjct: 423 SGLKPDRITFIVILSA 438
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 216/426 (50%), Gaps = 53/426 (12%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
+ L+ N + + + ++++ Y L K A L+K +Q LRP +S T
Sbjct: 275 EARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQI------EGLRP--NSVTI 326
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
+ ++ C +L+ G LH + K S V V T+L++MY L S +F
Sbjct: 327 ALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSR 386
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
+ V WN +++G V A LF++M +++G E +
Sbjct: 387 KKTVPWNALLSGCVHNKLATEAIGLFKKM----------LMEG-----------VEINAA 425
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T ++LPA ++ I+ Y + GF + +I+V+ LID Y+KCG + SA K+F
Sbjct: 426 TCNSLLPAYGILADLQPVNNINSYLMRSGFVS-NIQVATSLIDIYSKCGSLESAHKIFNT 484
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
I V+ +++ W+ II+G+ MHG G+ AV F++M + G+KPN VTF SVL +CSH G+
Sbjct: 485 IPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVD 544
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HY C+VD+LGRAGR+++A + +P + V LLG
Sbjct: 545 DGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPF-MPGHAVWGALLG 603
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC H NVE+GE R + E+E GN G+YVL+ + A +GR+ DAE +R+ MD+ K
Sbjct: 604 ACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKA 663
Query: 410 PGRSLV 415
P SL+
Sbjct: 664 PAHSLI 669
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 149/281 (53%), Gaps = 32/281 (11%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
TLL+N ++ Y +A ++ L+ + + P D++TY F+I+ C L
Sbjct: 86 TLLYNFMIKMYIAKGDYFEAMKVF--LEMLGSKDCCP-----DNYTYPFVIKACSELLLV 138
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G LH + F SH++V +L+ MY++ G ++++ K+FD + E+++V+WN MI G
Sbjct: 139 EYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGY 198
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
K G A +F +M V +GAS +++VLPA
Sbjct: 199 FKNGFANTALVVFNQMVDSGV--------------EIDGAS-------VVSVLPACGYLK 237
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + +HG E++ VSN L+D YAKCG + A +F+++ VER ++VSWTS
Sbjct: 238 ELEVGRRVHGLVEEKVLG--KKIVSNALVDMYAKCGSMDEARLVFDNM-VER-DVVSWTS 293
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+I+G+ ++G K+A+ F+ MQ GL+PN VT +L AC+
Sbjct: 294 MINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACA 334
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 44/259 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
QLHA + G S + + + LV Y G++ ++ KLFDEL +R + +N MI + G
Sbjct: 42 QLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKG 100
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
+ A +F EM P T V+ A + V
Sbjct: 101 DYFEAMKVFLEML--------------------GSKDCCPDNYTYPFVIKACSELLLVEY 140
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+++HG F + + V N L+ Y CG + A K+F+ +++ K++VSW ++I+G
Sbjct: 141 GRVLHGLTLVSKFGS-HLFVLNSLLAMYMNCGEVEEARKVFD--AMKEKSVVSWNTMING 197
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HG---------G 308
+ +G A+ F +M G++ + + +SVL AC HG
Sbjct: 198 YFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKK 257
Query: 309 LHYGCLVDMLGRAGRLEQA 327
+ LVDM + G +++A
Sbjct: 258 IVSNALVDMYAKCGSMDEA 276
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 218/423 (51%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + K+A L+K++ + + +RP D T ++ C + LG
Sbjct: 188 WNAMISGYAETGNNKEALELFKEMMK------TNVRP--DESTMVSVVSACAQSASIELG 239
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I GF S++ + AL+++Y+ K
Sbjct: 240 RQVHSWIDDHGFGSNLKIVNALIDLYI-------------------------------KC 268
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GE+E A LFE + ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 269 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 328
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y KR NA R S LID YAKCG I +A ++F+ S+
Sbjct: 329 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS--LIDMYAKCGDIEAAQQVFD--SI 384
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++L SW ++I GFAMHG AA + F RM+K ++P+ +TF+ +L+ACSH G+
Sbjct: 385 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 444
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G ++AE++ + E D V+ LL AC
Sbjct: 445 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIWCSLLKACK 503
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNVE+GE + ++++E N G YVL+ NI A GR+ + ++R +++++ K PG
Sbjct: 504 MHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGC 563
Query: 413 SLV 415
S +
Sbjct: 564 SSI 566
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 212/449 (47%), Gaps = 87/449 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + L L + +T+ FL+++C
Sbjct: 54 LIWNTMFRGHALSSDPVSALYLYVCMIS--------LGLLPNCYTFPFLLKSCAKSKAFR 105
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G+ +YV+T+L++MYV G L+D+ K+FD+ R++V++ +ITG
Sbjct: 106 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 165
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G + A+ +F+E+P ++VVSW ++ GY + A + P E T+++
Sbjct: 166 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 225
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q+ ++ + +H + + GF + ++++ N LID Y KCG + +A LFE +S
Sbjct: 226 VVSACAQSASIELGRQVHSWIDDHGFGS-NLKIVNALIDLYIKCGEVETACGLFEGLSY- 283
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G
Sbjct: 284 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 342
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGI------------------ 334
H L+DM + G +E A+++ I
Sbjct: 343 IHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMH 402
Query: 335 -------------------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
P +IT V LL ACS G +++G + R + E +
Sbjct: 403 GRANAAFDIFSRMRKNEIEPDDITFVG----LLSACSHSGMLDLGRHIFRSMKEDYKITP 458
Query: 376 G--DYVLMYNILAGVGRYVDAERLRRVMD 402
Y M ++L G + +AE + M+
Sbjct: 459 KLEHYGCMIDLLGHSGLFKEAEEMINTME 487
>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
Length = 670
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 203/408 (49%), Gaps = 47/408 (11%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL--GTQLHAVISKVGFQ 100
+A + ++++ Q S RP D T+S ++ + + G ++H G
Sbjct: 146 EALVFFRRMYQ------SGERP--DRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLL 197
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
+V V TA+++MY G L D+ F+EL +N VTWN M+T G A LF EM
Sbjct: 198 PNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREM 257
Query: 161 PCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNC 209
+ V W ++ Y + R A P + T + V+ + A++
Sbjct: 258 HDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQG 317
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+ IH F+A ++ VSN L+ Y KCGC+ AL +F S++ K+ +SW +IIS +
Sbjct: 318 RAIHARVRATNFDA-NLLVSNALVHMYGKCGCLDEALDVFH--SMKLKDEISWNTIISSY 374
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A HG A+ ++ M G+KP VTF+ +L+ACSHGGL
Sbjct: 375 AYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPS 434
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
H+GC++D+LGR GRL +AE + +P + + V LLGAC HG+++ G R +V
Sbjct: 435 VPHFGCIIDLLGRGGRLAEAELVLKSMPIQ-ANAVQWMSLLGACKTHGDLKRGVRAADQV 493
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ G YVL+ NI A GR+ D E++R++M R K PG+S +
Sbjct: 494 VDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWI 541
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 195/371 (52%), Gaps = 51/371 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT+ ++ C L G ++HA + GF +V V ++LV+MY G + +S ++F
Sbjct: 262 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIF 321
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D +P +N V+W+ ++ G + G+ + +F +M ++ + IL
Sbjct: 322 DRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTIL-------------- 367
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
A L A+ Q V +CQ I G + D+ V + L+D YAKCGCI A
Sbjct: 368 -----RTCAGLAAVRQGKEV-HCQYIRKGGWR------DVIVESALVDLYAKCGCIEYAQ 415
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+ + V +NL++W S+I GFA +G G+ A+ F +M K G+KP+ ++F+ +L ACSH
Sbjct: 416 TIFDQMPV--RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSH 473
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VD+LGRAG LE+AE I + D +
Sbjct: 474 RGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE-ILIETSDFRDDSSLW 532
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLGAC+ N E+ ER+ ++V+E+E YVL+ N+ VGR+ DA R+RR+M +R
Sbjct: 533 AALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDR 592
Query: 405 NALKFPGRSLV 415
K PG+S +
Sbjct: 593 GVNKMPGKSWI 603
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 156/324 (48%), Gaps = 49/324 (15%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDEL 129
Y+ L++TC + N G Q+HA + K G + +V +L+ +Y LG ++ K+FD L
Sbjct: 62 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 121
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+++++W MI+G V+ G+ + LF +M V EP+
Sbjct: 122 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGV---------------------EPN 160
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
T+ AV+ A + G ++ ++ HG RGF++ + +++ LID + + + A +LF
Sbjct: 161 AFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDS-NYVIASALIDMHGRNCALDDARQLF 219
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSH-G 307
+++ + + WTSIIS + A+ F MQ+ G+ P+ TF +VL AC + G
Sbjct: 220 DELL--EPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLG 277
Query: 308 GLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
L G LVDM G+ G + ++++I +P I + V L
Sbjct: 278 RLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMP--IKNSVSWSAL 335
Query: 348 LGACSFHGNVEMGERVTRKVLEME 371
LG +G+ + ++ RK+ +++
Sbjct: 336 LGGYCQNGDFKSVIQIFRKMEKVD 359
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 130/461 (28%), Positives = 216/461 (46%), Gaps = 58/461 (12%)
Query: 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYK----------------- 49
+ IH + L L+ ++ + L+ Y PKK L++
Sbjct: 552 IGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGY 611
Query: 50 -------QLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
Q +++ S ++ T++ ++ CV + +H I K GF
Sbjct: 612 ARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKD 671
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
YV AL++MY +G ++ S +F + +R++V+WN MITG + G + A +L EM
Sbjct: 672 KYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQR 731
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
R + D + G +P+ +T++ VLP A+ + IH Y K+
Sbjct: 732 RQGEDGS---DTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKL- 787
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
A D+ V + L+D YAKCGC+ A ++F+ + + +N+++W +I + MHG G+ A+E F
Sbjct: 788 AMDVAVGSALVDMYAKCGCLNLASRVFDQMPI--RNVITWNVLIMAYGMHGKGEEALELF 845
Query: 283 ERMQKVG------LKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
M G ++PN VT++++ ACSH G+ HY CL
Sbjct: 846 RIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACL 905
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+LGR+GR+++A ++ +PS + V LLGAC H +VE GE + + +E
Sbjct: 906 VDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNV 965
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVLM NI + G + A +R+ M E K PG S +
Sbjct: 966 ASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWI 1006
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 32/245 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ--SHVYVNTALVNMYVSLGFLKDSSK 124
D+F + +++ + LG Q+HA + K G S V V +LVNMY G L + +
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD++P+R+ V+WN MI L ++ E E + LF M NV
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENV------------------- 429
Query: 185 STEPSEITILAVLPAIWQ-NGAVRNCQLIHGYGEKRGFNAFDIR--VSNCLIDTYAKCGC 241
+P+ T+++V A G VR + +H Y + G D+R +N L+ YA+ G
Sbjct: 430 --DPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG----DLRTYTNNALVTMYARLGR 483
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A LF + K+LVSW ++IS + + + A+ M G++P+ VT SVL
Sbjct: 484 VNDAKALFG--VFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVL 541
Query: 302 NACSH 306
ACS
Sbjct: 542 PACSQ 546
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 155/371 (41%), Gaps = 73/371 (19%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ S D ++A L +Y +RP D T + ++ C L +G
Sbjct: 502 WNTVISSLSQNDRFEEA------LMYVYLMIVDGVRP--DGVTLASVLPACSQLERLRIG 553
Query: 88 TQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
++H + G + +V TALV+MY + K +FD + R + WN ++ G
Sbjct: 554 REIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAG--- 610
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
YAR+ F++ R V + + P+ T +VLPA +
Sbjct: 611 -----YARNEFDDQALRLFVEMI------------SESEFCPNATTFASVLPACVRCKVF 653
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ + IHGY KRGF D V N L+D Y++ G + + +F ++ ++++VSW ++I
Sbjct: 654 SDKEGIHGYIVKRGFGK-DKYVQNALMDMYSRMGRVEISKTIFGRMN--KRDIVSWNTMI 710
Query: 267 SGFAMHGMGKAAVENFERMQK------------------VGLKPNRVTFLSVLNACSH-G 307
+G + G A+ MQ+ V KPN VT ++VL C+
Sbjct: 711 TGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALA 770
Query: 308 GLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
L G LVDM + G L A ++ +P I +V+ +L
Sbjct: 771 ALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMP--IRNVITWNVL 828
Query: 348 LGACSFHGNVE 358
+ A HG E
Sbjct: 829 IMAYGMHGKGE 839
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 210/409 (51%), Gaps = 55/409 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ L+ YS + +A L+ ++ H +P + FT S L++ T + G
Sbjct: 174 WTVLISGYSQSGQASEALALFPKML------HLGFQP--NEFTLSSLLKASGTGPSDHHG 225
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLHA K G+ +V+V ++L++MY ++++ +F+ L +N+V+WN +I G +
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE E+ LF +M + G+ EP+ T +VL A +G++
Sbjct: 286 GEGEHVMRLFXQM----------LRQGF-----------EPTHFTYSSVL-ACASSGSLE 323
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ +H + K G + N LID YAK G I A K+F + ++++VSW SIIS
Sbjct: 324 QGKWVHAHVIKSGGQPI-AYIGNTLIDMYAKSGSIKDAKKVFRRLV--KQDIVSWNSIIS 380
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G+A HG+G A++ FE+M K ++PN +TFLSVL ACSH GL
Sbjct: 381 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEA 440
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
H+ +VD+LGRAGRL +A K +P + T V LLGAC H N+++G +
Sbjct: 441 QVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPT-AAVWGALLGACRMHKNMDLGVYAAEQ 499
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E++ + G +VL+ NI A GR DA ++R++M E K P S V
Sbjct: 500 IFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWV 548
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 135/280 (48%), Gaps = 44/280 (15%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
YS ++ C L G +HA I F+ + + ++NMY G L+++ LFD++P
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+++V+W V+I+G + G+ A +LF +M + G+ +P+E
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKM----------LHLGF-----------QPNE 206
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T+ ++L A + + + +H + K G++ ++ V + L+D YA+ + A +F
Sbjct: 207 FTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD-MNVHVGSSLLDMYARWAHMREAKVIFN 265
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310
++ KN+VSW ++I+G A G G+ + F +M + G +P T+ SVL S G L
Sbjct: 266 SLAA--KNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLE 323
Query: 311 YG--------------------CLVDMLGRAGRLEQAEKI 330
G L+DM ++G ++ A+K+
Sbjct: 324 QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKV 363
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 187/342 (54%), Gaps = 39/342 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++++ YV G ++D+ LFD +P R++VTW MI G K G + A++LF++MP R+VV+
Sbjct: 223 SMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVA 282
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + NR + + E P E T++ VL AI Q G + +H Y
Sbjct: 283 YNSMMAGYVQ-NRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 341
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
++ F ++ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G
Sbjct: 342 IVEKQF-LLGGKLGVALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLG 398
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A + ++++ +KP+ +TF+ VLNACSH GL HYGC
Sbjct: 399 ESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 458
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+L R+G +E A+ + +P E D V+ R L ACS H E GE V + ++
Sbjct: 459 MVDILSRSGSIELAKNLIEEMPIEPND-VIWRTFLTACSHHKEFETGELVAKHLILQADY 517
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G + D R+R +M ER K PG S +
Sbjct: 518 NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 559
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 181/377 (48%), Gaps = 51/377 (13%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ +S P++A LL+ + +I P+ D F+ S +++ C L +
Sbjct: 54 LWNAMIKSHSHGTDPRRALLLFCLMLEIGV-------PV-DKFSLSLVMKACSRLGFVKG 105
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+H + K G S +++ L+ +Y+ G L + ++FD +P+R+ V++N MI G VK
Sbjct: 106 GLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVK 165
Query: 147 WGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGAST-------EPSEITILAVL 197
G +E A LF+ MP +N++SW ++ GY + + ++ E I+ +++
Sbjct: 166 CGSIESASELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMI 225
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
++G + + + + +R D+ +ID YAK G + A LF+ + +
Sbjct: 226 DGYVKHGRIEDAKDLFDMVPRR-----DVVTWATMIDGYAKLGFVHQAKTLFDQMP--HR 278
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH---------- 306
++V++ S+++G+ + A+E F M+K L P+ T + VL+A +
Sbjct: 279 DVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDM 338
Query: 307 -----------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
GG L+DM + G ++ A + GI ++ D ++G + HG
Sbjct: 339 HLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSID--HWNAMIGGLAIHG 396
Query: 356 NVEMGERVTRKVLEMER 372
+GE +L++ER
Sbjct: 397 ---LGESAFDMLLQIER 410
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 89/213 (41%), Gaps = 24/213 (11%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
S L P D T ++ L + +H I + F + AL++MY G +
Sbjct: 310 SHLSP--DETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSI 367
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ + +F+ + +++ WN MI GL G E A + ++ R++
Sbjct: 368 QHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSI-------------- 413
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
+P +IT + VL A +G V+ L ++ ++ C++D ++
Sbjct: 414 -------KPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRS 466
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
G I A L E++ +E +++ W + ++ + H
Sbjct: 467 GSIELAKNLIEEMPIEPNDVI-WRTFLTACSHH 498
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 221/420 (52%), Gaps = 43/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ +A LY+ ++ L F++F+++ ++ CV L L
Sbjct: 163 WNTIVLAYAKQGCFNEAIGLYRDFRR--------LDMGFNAFSFAGVLILCVKLKELQLA 214
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H + GF S++ +++++V+ Y G ++ + LFDE+ +++ W +++G KW
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKW 274
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++ A LF +MP +N VSW+ ++ GY R + + A P + T + L
Sbjct: 275 GDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCL 334
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A A+++ + +HGY + F I VS+ LID Y+KCG + ++ +F + ++
Sbjct: 335 CACASIAALKHGKQVHGYLIRTYFRCNTIVVSS-LIDMYSKCGMLEASCCVFHLMG-NKQ 392
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
++V W ++IS A +G G+ A++ F M + GLKP+R+TF+ +L+ACSH GL
Sbjct: 393 DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFF 452
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CL+D+LGRAG + L S D V LLG C H
Sbjct: 453 KAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVN-ELENMSCKPDDRVWSALLGVCRIHN 511
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+E+G +V +V+E++ + YV + ++ A +G++ E++R +MDE+ K G S +
Sbjct: 512 NIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWI 571
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 167/376 (44%), Gaps = 67/376 (17%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L+R C Y G +H + GF+ V L+ MY G ++ K+FD++ R
Sbjct: 68 LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVR 127
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------- 184
NL +WN M+ G K G++ AR LF+ M ++VVSW I+ Y + N A
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187
Query: 185 --STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ + VL + ++ + +HG GF + ++ +S+ ++D Y+KCG +
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLS-NLVLSSSIVDAYSKCGEM 246
Query: 243 FSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHG 273
A LF+++ V+ KN VSW+++ISG+A +
Sbjct: 247 RCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HGGL---HYGC------ 313
+G A++ F +M K G+ P + TF S L AC+ HG L ++ C
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366
Query: 314 -LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-E 371
L+DM + G LE A + DVVV ++ A + +G+ GE+ + +M E
Sbjct: 367 SLIDMYSKCGMLE-ASCCVFHLMGNKQDVVVWNTMISALAQNGH---GEKAMQMFNDMVE 422
Query: 372 RGNGGDYVLMYNILAG 387
G D + IL+
Sbjct: 423 SGLKPDRITFIVILSA 438
>gi|356547105|ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 477
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 199/399 (49%), Gaps = 83/399 (20%)
Query: 66 FDSFTYSFLIRTCV---TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
FD +TY+F++ C + S +G QLHA I K GF+S++ V T + Y S
Sbjct: 103 FDEYTYNFVLGACARSPSASTLWVGRQLHARIVKHGFESNILVPTTKIYFYAS------- 155
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+++++ AR +F+EMP R+ V+W ++ GY+ N
Sbjct: 156 --------NKDIIS----------------ARRVFDEMPRRSTVTWNAMITGYSSQKEGN 191
Query: 183 G-----------------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
+ +P+ TI++VL A+ Q G + IHG+ EK D
Sbjct: 192 KKYALNALSLFIDMLVDVSVIKPTGTTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPED 251
Query: 226 -IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ + L+D Y+KCGC+ SAL +F ++ +KN+++WT++ + A+HG GK A+E +
Sbjct: 252 DVFIGTGLVDMYSKCGCLDSALSVFWRMN--QKNILTWTAMTTSLAIHGKGKQALEVLYK 309
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M G+KPN TF S L+AC HGGL HYGC+VD+LGRAG
Sbjct: 310 MGAYGVKPNEATFTSFLSACCHGGLVEEGLILFHEMKRTFGMMPQIKHYGCIVDLLGRAG 369
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG------ 376
LE+A + +P D V+ R LLGAC HG+V MGE+V + +L++E +
Sbjct: 370 NLEEAYDFIMRMPIN-PDAVIWRSLLGACKIHGDVVMGEKVGKFLLQLEEWSSAESPKSE 428
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
DY+ + N+ A ++ D E +R+ M + L G S V
Sbjct: 429 DYIALSNVYALAEKWDDVEIVRKTMKSKGILSKAGSSAV 467
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 188/340 (55%), Gaps = 36/340 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+++ Y + ++ LF ++P R++ +WN+MITG ++ LE A+ LF++MP RNVV+
Sbjct: 227 AMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVT 286
Query: 168 WTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
WT +++GY + +S A P+++T L + A + Q +H
Sbjct: 287 WTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMIC 346
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K F FD + + L++ YAKCG I A K+F ++S E K+++SW +I+ +A HG+G
Sbjct: 347 KTPFQ-FDTFIESTLMNLYAKCGEIILARKVF-NLSKE-KDVISWNGMIAAYAHHGVGLE 403
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A+ +E+MQ+ G KPN VT++ +L+ACSH GL HY CL+
Sbjct: 404 AIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLI 463
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
D+ RAGRL A+++ + E + V LLG C+ HGN +G+ R +LE E N
Sbjct: 464 DLCSRAGRLGDAKRLIHFLKVEPSSTVW-NALLGGCNSHGNESIGDLAARNLLEAEPNNA 522
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G Y L+ NI A G++ +A ++R M++R K PG S +
Sbjct: 523 GTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 63 RPLFD--SFTYSFLIRTCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
R LFD + + T + Y G + A+ ++ ++ V NT ++ Y S G
Sbjct: 86 RALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNT-MLEAYTSSGR 144
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ D+ LF+ +P R+ +WN+++ LV+ G ++ AR LF+ MP RNV++WT ++ G R
Sbjct: 145 VGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARS 204
Query: 179 NRSNGAST------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
N A E + ++ A++ +G RN + + DI N +
Sbjct: 205 GSVNEARALFDGMPERNVVSWNAMI-----SGYARNHMIDEAHDLFMKMPTRDIASWNIM 259
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
I + + + A +LF+ + R+N+V+WT++++G+ + A++ F M G++P
Sbjct: 260 ITGFIQNKNLERAQELFDKMP--RRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRP 317
Query: 293 NRVTFLSVLNACSH-GGLHYG 312
N+VTFL ++ACS+ GL G
Sbjct: 318 NQVTFLGAVDACSNLAGLSEG 338
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
+ V +HV V + G + D+ +LFD P+R++V+W ++ G L AR
Sbjct: 27 AAVDVSNHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDAR 86
Query: 155 SLFEEMPC-RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVR 207
+LF+ RNVV+WT +L GY R R + A E + ++ +L A +G V
Sbjct: 87 ALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVG 146
Query: 208 N-CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ C L +G + D N L+ + G I A KLF+ + +N+++WT+++
Sbjct: 147 DACTLFNGMPVR------DAGSWNILLAALVRSGNIDKARKLFD--RMPERNVMAWTTMV 198
Query: 267 SGFAMHGMGKAAVENFERMQK 287
+G A G A F+ M +
Sbjct: 199 AGIARSGSVNEARALFDGMPE 219
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 45/272 (16%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP + T+ + C L+ + G Q+H +I K FQ ++ + L+N+Y G +
Sbjct: 315 IRP--NQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIIL 372
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+F+ E+++++WN MI G A L+E+M +GY
Sbjct: 373 ARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQ----------ENGY------ 416
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+P+++T + +L A +G V I Y K A CLID ++ G
Sbjct: 417 -----KPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGR 471
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFERMQKVGLKPNRVTFL 298
+ A +L + VE + V W +++ G HG +G A N + +PN
Sbjct: 472 LGDAKRLIHFLKVEPSSTV-WNALLGGCNSHGNESIGDLAARNL-----LEAEPN----- 520
Query: 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
NA + Y L ++ AG+ ++A KI
Sbjct: 521 ---NAGT-----YTLLCNIYASAGKWKEAAKI 544
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 201/409 (49%), Gaps = 69/409 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT------------------- 107
+ +T S L+R ++ L Q+HA+ +G +V+V +
Sbjct: 105 NDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAF 164
Query: 108 ------------ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
ALV+ Y+ LG D+ FD++P+RN+++W ++ G VK ++ ARS
Sbjct: 165 NDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARS 224
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGA 205
+F++M RNVVSWT ++ GY + R A T P+ T +VL A + +
Sbjct: 225 VFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSS 284
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ +H K G A D+ L+D YAKCG + +A +FE S+ KNLVSW +I
Sbjct: 285 LIMGLQLHPCIIKSGI-ANDVIWLTSLVDMYAKCGDMDAAFGVFE--SIRDKNLVSWNAI 341
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I G+A HG+ A+E F+RM+ VG P+ VTF++VL+AC H GL
Sbjct: 342 IGGYASHGLATRALEEFDRMKVVG-TPDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYG 400
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C+VD+ GRAGR ++AE + +P E DVV+ LL AC H N+E+GE
Sbjct: 401 IQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFE-PDVVLWGALLAACGLHSNLELGEYA 459
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPG 411
++ +E + Y ++ I G + LR M ER K PG
Sbjct: 460 AERIRRLESSHPVSYSVLSKIQGEKGVWSSVNELRDTMKERGIKKQTPG 508
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 162/427 (37%), Gaps = 143/427 (33%)
Query: 109 LVNMYVSLGFLKDSSKLFDE-LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++N Y+ +K + KL DE L N+V+WN+++T ++ ++ LF++MP ++ VS
Sbjct: 14 MINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVS 73
Query: 168 WTGILDGYTRMNRSNG----------ASTEPSEITILAVLPAIWQ---NGAVRNCQ---- 210
W +L G+ R S G A P++ TI +L A+ + VR
Sbjct: 74 WNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAF 133
Query: 211 -------------LIHGY-GEK------RGFNAF---DIRVSNCLIDTYAKCGCIFSALK 247
LI Y G K R FN D+ N L+ +Y + G A
Sbjct: 134 HLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQT 193
Query: 248 LFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKAA 278
F+ + + +N+VSWT++ISG+ + A
Sbjct: 194 AFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDA 253
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHG-----GLH-YGC---------------LVDM 317
++ F M K +PN TF SVL+AC+ GL + C LVDM
Sbjct: 254 LKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDM 313
Query: 318 LGRAGRLEQA----EKI--------------------------------ALGIPSEITDV 341
+ G ++ A E I +G P E+T V
Sbjct: 314 YAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTPDEVTFV 373
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVL-------EMERGNGGDYVLMYNILAGVGRYVDA 394
V L AC G VE GE+ +L EME Y M ++ GR+ +A
Sbjct: 374 NV----LSACVHAGLVEEGEKHFTDMLTKYGIQAEMEH-----YSCMVDLYGRAGRFDEA 424
Query: 395 ERLRRVM 401
E L + M
Sbjct: 425 ENLIKNM 431
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 144/519 (27%), Positives = 230/519 (44%), Gaps = 141/519 (27%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N ++ +S P+KA LL+ + + L D F+ S +++ C L +
Sbjct: 59 FLWNAVIKSHSHGADPRKALLLFCLMLENGV--------LVDKFSMSLVLKACSRLGFAK 110
Query: 86 LGTQLHAVISK----------------------VGFQSHVYVN---------TALVNMYV 114
G Q+H + K +GF V+ ++++ YV
Sbjct: 111 EGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYV 170
Query: 115 SLGFLKDS----------------------------------SKLFDELPERNLVTWNVM 140
G ++ + SKLFDE+PE++L++WN M
Sbjct: 171 KCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSM 230
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST-------------- 186
I G VK G +E A+ LF+ MP R+VV+W ++DGY ++ + A T
Sbjct: 231 IGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYN 290
Query: 187 ----------------------------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
P E T++ VL AI Q G + +H Y +
Sbjct: 291 SMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVE 350
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
+ F ++ LID Y+KCG I A+++FE I E K++ W ++I G A+HG+G++A
Sbjct: 351 KRF-LLSGKLGVALIDMYSKCGSIQHAMRVFEGI--ESKSIDHWNAMIGGLAVHGLGESA 407
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVD 316
+ ++++ +KP+ +TF+ VLNACSH GL HYGC+VD
Sbjct: 408 FDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 467
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
+L R+G +E A+ + +P E DV+ R L ACS H E GE V + ++ N
Sbjct: 468 ILARSGSIELAKNLIEEMPIEPNDVI-WRTFLNACSHHKEFETGELVAKHLILQAGYNPS 526
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVL+ N+ A G + D R+R +M E+ K PG S +
Sbjct: 527 SYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWI 565
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 210/385 (54%), Gaps = 40/385 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F+++FL+++ + +H + K GF H++V L++ Y + G + ++F
Sbjct: 106 DQFSFNFLLKSRSRTTPLTHHNDVHGAVLKFGFCRHLHVQNGLIHFYANRGMTLLARRVF 165
Query: 127 DELP----ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+++ E ++V+W+ ++ VK GELE AR +F+EMP R+VVSWT +L GY++ R
Sbjct: 166 EDVLQLGLEVDVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPR 225
Query: 183 GA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
A P E+T+++++ A G + ++H + E+ GF + + + N L
Sbjct: 226 EALELFGEMRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGF-GWMVALCNAL 284
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID Y KCGC+ A ++F ++ RK+L++W ++++ A +G A FE M G+ P
Sbjct: 285 IDMYGKCGCLEEAWRVFHGMT--RKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVP 342
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
+ VT L++L A +H GL HYG ++DMLGRAGRL++A +
Sbjct: 343 DSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLGRAGRLQEAYDL 402
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
IP D V LLGAC HG+VEMGE++ +K+LE++ GG Y+L+ +I G+
Sbjct: 403 LTNIPIPCNDAVWG-ALLGACRIHGDVEMGEKLIKKLLELKPDEGGYYILLRDIYVAAGQ 461
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
V+A R+ M A K PG S V
Sbjct: 462 TVEANETRQAMLASRARKNPGCSWV 486
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 32/247 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ +L YS A P++A L+ ++++ S + P D T L+ C +L G
Sbjct: 211 WTAMLTGYSQAKRPREALELFGEMRR------SGVWP--DEVTMVSLVSACASLGDMETG 262
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + + GF V + AL++MY G L+++ ++F + ++L+TWN M+T +
Sbjct: 263 MMVHRFVEENGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANY 322
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G + A LFE M C VV P +T+LA+L A G V
Sbjct: 323 GNADEAFRLFEWMVCSGVV---------------------PDSVTLLALLVAYAHKGLVD 361
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+L G I +ID + G + A L +I + + V W +++
Sbjct: 362 EGIRLFESMDRDYGVEP-RIEHYGAVIDMLGRAGRLQEAYDLLTNIPIPCNDAV-WGALL 419
Query: 267 SGFAMHG 273
+HG
Sbjct: 420 GACRIHG 426
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 116/280 (41%), Gaps = 67/280 (23%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVL 197
G+L YA +F++MP + ++ + N + P + + +L
Sbjct: 55 GDLRYAHRMFDQMPHPTTFFYNTLIRAHAHSTTPSLSSLSFNLMRQNNVAPDQFSFNFLL 114
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI----- 252
+ + + + +HG K GF + V N LI YA G A ++FED+
Sbjct: 115 KSRSRTTPLTHHNDVHGAVLKFGF-CRHLHVQNGLIHFYANRGMTLLARRVFEDVLQLGL 173
Query: 253 ----------------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ ++++VSWT++++G++ + A+E F
Sbjct: 174 EVDVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGE 233
Query: 285 MQKVGLKPNRVTFLSVLNAC-SHGGLHYG--------------------CLVDMLGRAGR 323
M++ G+ P+ VT +S+++AC S G + G L+DM G+ G
Sbjct: 234 MRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGC 293
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
LE+A ++ G+ + ++ ++ C+ +GN + R+
Sbjct: 294 LEEAWRVFHGMTRK--SLITWNTMVTVCANYGNADEAFRL 331
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 218/423 (51%), Gaps = 75/423 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y + K+A L+K++ + + +RP D T ++ C LG
Sbjct: 189 WNAMISGYVETGNYKEALELFKEMMMM-----TNVRP--DESTMVTVVSACAQSDSIELG 241
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H+ I+ GF S++ + AL+++Y K+
Sbjct: 242 RHVHSWINDHGFASNLKIVNALIDLYS-------------------------------KF 270
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GE+E A LF+ + ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 271 GEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 330
Query: 198 PAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
PA GA+ + IH Y K+ G + LID YAKCG I +A ++F D S+
Sbjct: 331 PACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVF-DSSMS 389
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++L +W ++ISGFAMHG AA + F RM+ G++P+ +TF+ +L+ACSH G+
Sbjct: 390 NRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRN 449
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC++D+LG +G ++AE++ +P E D V+ LL AC
Sbjct: 450 IFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPME-PDGVIWCSLLKACKI 508
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN-ALKFPGR 412
HGN+E+GE +K++++E GN G YVL+ NI A GR+ + ++R +++++ K PG
Sbjct: 509 HGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGC 568
Query: 413 SLV 415
S +
Sbjct: 569 SSI 571
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/454 (27%), Positives = 210/454 (46%), Gaps = 96/454 (21%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + L L DS+T+ FL+++C
Sbjct: 55 LIWNTMFRGHALSSDPVSALKLYLVMIS--------LGLLPDSYTFPFLLKSCAKSKIRK 106
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+GF +YV+T+L++MY G L+D+ K+FD R++V++ +I G V
Sbjct: 107 EGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYV 166
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITIL 194
G +E A+ LF+E+P ++VVSW ++ GY A + P E T++
Sbjct: 167 SRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMV 226
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
V+ A Q+ ++ + +H + GF A ++++ N LID Y+K G + +A +LF+ +
Sbjct: 227 TVVSACAQSDSIELGRHVHSWINDHGF-ASNLKIVNALIDLYSKFGEVETACELFD--GL 283
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG- 312
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G + G
Sbjct: 284 WNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 343
Query: 313 ----------------------CLVDMLGRAGRLEQAEKI-------------------- 330
L+DM + G ++ A+++
Sbjct: 344 WIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGF 403
Query: 331 --------ALGI----------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
A I P +IT V LL ACS G +++G + R M R
Sbjct: 404 AMHGRANAAFDIFSRMRMNGIEPDDITFVG----LLSACSHSGMLDLGRNIFRS---MTR 456
Query: 373 G-----NGGDYVLMYNILAGVGRYVDAERLRRVM 401
G Y M ++L G + +AE + M
Sbjct: 457 GYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTM 490
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A+ +F+ +++ NL+ W ++ G A+ +A++ + M +GL P+ TF +L +C
Sbjct: 42 AISVFD--TIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSC 99
Query: 305 SHGGLH---------------------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+ + + L+ M + GRLE A K+ I S DVV
Sbjct: 100 AKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKV-FDISSH-RDVVS 157
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG---VGRYVDAERLRRV 400
L+ G +E +++ ++ G D V +++G G Y +A L +
Sbjct: 158 YTALIAGYVSRGYIESAQKLFDEI------PGKDVVSWNAMISGYVETGNYKEALELFKE 211
Query: 401 M 401
M
Sbjct: 212 M 212
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 194/381 (50%), Gaps = 37/381 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D F + LI C + LG QLH++ K G V V+ +L++MY L+ + +
Sbjct: 369 LDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESI 428
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
F + E+++V+W MIT + G + AR F+ M +NV++W +L Y +
Sbjct: 429 FRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGL 488
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
P +T + + GA + I G K G D V+N +I
Sbjct: 489 RMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGL-ILDTSVANAVIT 547
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y+KCG I A K+F+ ++V K++VSW ++I+G++ HGMGK A+E F+ + K G KP+
Sbjct: 548 MYSKCGRILEARKVFDFLNV--KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDY 605
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+++++VL+ CSH GL H+ C+VD+LGRAG L +A+ +
Sbjct: 606 ISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLID 665
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + T V LL AC HGN E+ E + V E++ + G Y+LM I A G+
Sbjct: 666 EMPMKPT-AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSD 724
Query: 393 DAERLRRVMDERNALKFPGRS 413
D+ ++R++M ++ K PG S
Sbjct: 725 DSAQIRKLMRDKGIKKNPGYS 745
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
++FT+++ +++C L +L QL ++ K G Q V ALV+M+V G + +S+LF
Sbjct: 137 NAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLF 196
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------ 180
+ E + N M+ G VK +++A LF+ MP R+VVSW ++ ++ R
Sbjct: 197 VRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256
Query: 181 ------SNG----ASTEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
S G ++T S +T A L ++ W G + Q+I R D V+
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRW--GKQLHAQVI------RNLPCIDPYVA 308
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
+ L++ YAKCGC A +F S+ +N V+WT +I+GF HG +VE F +M+
Sbjct: 309 SALVELYAKCGCFKEAKGVFN--SLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAEL 366
Query: 290 LKPNRVTFLSVLNAC 304
+ ++ ++++ C
Sbjct: 367 MTLDQFALATLISGC 381
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 46/279 (16%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DE 128
++ +R+C LH + VG S V++ L++ Y+S G L D+ +L +
Sbjct: 6 AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY------------- 175
+ N++T NVM+ G VK G L A LF MP R+V SW ++ GY
Sbjct: 66 IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125
Query: 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
M+RS +S P+ T + + G + G +K G + D V+ L+D
Sbjct: 126 VSMHRSGDSS--PNAFTFAYAMKSCGALGERSLALQLLGMVQKFG-SQDDSDVAAALVDM 182
Query: 236 YAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTSII 266
+ +CG + A +LF I S+ +++VSW ++
Sbjct: 183 FVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMV 242
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
S + G + A++ MQ G++ + T+ S L AC+
Sbjct: 243 SALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 281
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 186/376 (49%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ Y G L+++ ++FD +P++N V+WN M+ V+ +E A+ LF+ MPC
Sbjct: 324 VFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPC 383
Query: 163 RNVVSWTGILDGYTRMNRSN------GASTEPSEITILAVLPAI---------------- 200
RNV SW +L GY + + G + ++ A+L A
Sbjct: 384 RNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443
Query: 201 -----WQNGAVRNCQL--------------IHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
W N + C L +H K G+ V N L+ Y KCG
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGY-GVGCFVGNALLAMYFKCGS 502
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A FE++ E +++VSW ++I+G+A HG GK A+E F+ M+K KP+ +T + VL
Sbjct: 503 MEEAHSAFEEM--EERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVL 560
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
ACSH GL HY C++D+LGRAGRL++A + +P E
Sbjct: 561 AACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFE-P 619
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D + LLGA H N E+G K+ E+E N G YVL+ NI A G++ D +++R
Sbjct: 620 DSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRH 679
Query: 400 VMDERNALKFPGRSLV 415
+M ER K PG S +
Sbjct: 680 IMHERGVKKVPGFSWI 695
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 168/389 (43%), Gaps = 83/389 (21%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT-----CV 79
+ +NTLLH ++ S L+ ++ P+ DS +Y+ +I + V
Sbjct: 169 SFSYNTLLHALGVSSSLADVRALFDEM------------PVKDSVSYNVMISSHANHGLV 216
Query: 80 TLS--YPNLGTQLHAVI----------------SKVGFQSHVYVNT----ALVNMYVSLG 117
+L+ Y +L + AV ++ F S + AL+ YV
Sbjct: 217 SLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRS 276
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
++++ K+F+++P+R++V+WN M++G + G++ AR LF+ P R+V +WT I+ GY +
Sbjct: 277 QIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQ 336
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-------FNAFDIR--- 227
NG E V A+ AV ++ Y ++R F+A R
Sbjct: 337 ----NGMLEEAKR-----VFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA 387
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
N ++ YA+ G + A +F + +K+ VSW ++++ ++ G + ++ F+ M +
Sbjct: 388 SWNTMLTGYAQAGMLDEARAIFG--MMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGR 445
Query: 288 VGLKPNRVTFLSVLNACS----------------HGGLHYGCLVD-----MLGRAGRLEQ 326
G NR F VL+ C+ G GC V M + G +E+
Sbjct: 446 CGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEE 505
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHG 355
A + E DVV ++ + HG
Sbjct: 506 AHSAFEEM--EERDVVSWNTMIAGYARHG 532
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++ ++ TC ++ G QLH+ + K G+ +V AL+ MY G ++++ F+E+
Sbjct: 454 AFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEM 513
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
ER++V+WN MI G + G + A +F+ M ST+P
Sbjct: 514 EERDVVSWNTMIAGYARHGFGKEALEVFDTM---------------------RKTSTKPD 552
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKL 248
+IT++ VL A +G V + + Y R F A C+ID + G + A+ L
Sbjct: 553 DITLVGVLAACSHSGLVEK-GISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNL 611
Query: 249 FEDISVERKNLVSWTSIISGFAMH---GMGKAAVEN 281
+D+ E + + W +++ +H +G+ A E
Sbjct: 612 MKDMPFEPDSTM-WGALLGASRIHRNSELGRNAAEK 646
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 75/244 (30%)
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA---------------- 153
+ ++ G + D+ +LF +P R+ T+N M+ G G L A
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYN 173
Query: 154 ---------------RSLFEEMPC-------------------------------RNVVS 167
R+LF+EMP ++ VS
Sbjct: 174 TLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVS 233
Query: 168 WTGILDGYTRMNRSNGA------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
W G+L Y R R A TE I+ A++ Q + Q + +R
Sbjct: 234 WNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQR-- 291
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
D+ N ++ YA+ G + A +LF+ + +++ +WT+I+SG+A +GM + A
Sbjct: 292 ---DVVSWNTMVSGYARRGDMAEARRLFDVAPI--RDVFTWTAIVSGYAQNGMLEEAKRV 346
Query: 282 FERM 285
F+ M
Sbjct: 347 FDAM 350
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P+ ++ N IT ++ G + A LF MP R+ ++ +L GY +NG P
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYA----ANG--RLPQ 156
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRG-------FNAFDIRVS---NCLIDTYAKC 239
++ +P + + L+H G F+ ++ S N +I ++A
Sbjct: 157 ALSFFRSIP---RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANH 213
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
G + A F D++ E K+ VSW +++ + +G + A E F+
Sbjct: 214 GLVSLARHYF-DLAPE-KDAVSWNGMLAAYVRNGRIQEARELFD 255
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 207/410 (50%), Gaps = 80/410 (19%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV-GFQ 100
++A L+K++ + + +RP D T ++ C LG ++H ++ GF
Sbjct: 197 EEALELFKEMMR------TNVRP--DEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFG 248
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
S + + A + +Y K G++E A LFE +
Sbjct: 249 SSLKIVNAFIGLYS-------------------------------KCGDVEIASGLFEGL 277
Query: 161 PCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQ 210
C++VVSW ++ GYT MN A P+++T+L+VLPA GA+ +
Sbjct: 278 SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGR 337
Query: 211 LIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
IH Y +KR N +R S LID YAKCG I +A ++F S+ K+L SW ++I
Sbjct: 338 WIHVYIDKRLKGVTNGSALRTS--LIDMYAKCGDIEAAHQVFN--SMMHKSLSSWNAMIF 393
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
GFAMHG AA + F RM+K G++P+ +T + +L+ACSH GL
Sbjct: 394 GFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNIT 453
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC++D+LG AG ++AE+I +P E D V+ LL AC HGN+E+ E +
Sbjct: 454 PKLEHYGCMIDLLGHAGLFKEAEEIIHMMPME-PDGVIWCSLLKACKMHGNLELAESFAQ 512
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K++E+E N G YVL+ NI A GR+ D R+R V++ + K PG S +
Sbjct: 513 KLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSI 562
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 172/342 (50%), Gaps = 51/342 (14%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+L + + +Y ++ + H P +++T+ FL+++C
Sbjct: 49 LIWNTMLRGLASSSDLVSPLEMYVRM---VSXGHVP-----NAYTFPFLLKSCAKSKTFE 100
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+HA + K+G + Y +T+L++MY G L+D+ K+FD +R++V+ +ITG
Sbjct: 101 EGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYA 160
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYT-------------RMNRSNGASTEPSEIT 192
G++ AR +F+ + R+VVSW ++ GY M R+N P E T
Sbjct: 161 SRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTN---VRPDEGT 217
Query: 193 ILAVLPAIWQNGAVRNCQLIHG-YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+++VL A Q+G++ + IH + GF + +++ N I Y+KCG + A LFE
Sbjct: 218 LVSVLSACAQSGSIELGREIHTLVDDHHGFGS-SLKIVNAFIGLYSKCGDVEIASGLFEG 276
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLH 310
+S K++VSW ++I G+ + K A+ F+ M + G PN VT LSVL AC+H G +
Sbjct: 277 LSC--KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 334
Query: 311 YG----------------------CLVDMLGRAGRLEQAEKI 330
G L+DM + G +E A ++
Sbjct: 335 IGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQV 376
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 32/248 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NTL+ Y+ + K+A LL+ Q++ SP + T ++ C L ++G
Sbjct: 285 WNTLIGGYTHMNLYKEALLLF---QEMLRSGESP-----NDVTMLSVLPACAHLGAIDIG 336
Query: 88 TQLHAVISK--VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+H I K G + + T+L++MY G ++ + ++F+ + ++L +WN MI G
Sbjct: 337 RWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFA 396
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G A LF M R NG EP +IT++ +L A +G
Sbjct: 397 MHGRANAAFDLFSRM-------------------RKNG--IEPDDITLVGLLSACSHSGL 435
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + I + + C+ID G A ++ + +E ++ W S+
Sbjct: 436 LDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVI-WCSL 494
Query: 266 ISGFAMHG 273
+ MHG
Sbjct: 495 LKACKMHG 502
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 24/235 (10%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYV---SLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
HA + K G + Y + L+ + V L + +F+ E NL+ WN M+ GL
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 148 GELEYARSLFEEMPCR----NVVSWTGILDGYTRMNRSNGASTEPSEITIL--------- 194
+L ++ M N ++ +L + +++ L
Sbjct: 62 SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121
Query: 195 -AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+++ +NG + + + + +R D+ LI YA G + SA K+F+ I+
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQR-----DVVSCTALITGYASRGDVRSARKVFDXIT 176
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
+++VSW ++I+G+ + + A+E F+ M + ++P+ T +SVL+AC+ G
Sbjct: 177 --ERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSG 229
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A+ +FE + + NL+ W +++ G A + +E + RM G PN TF +L +C
Sbjct: 36 AVSVFE--TXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSC 93
Query: 305 SHGG------------LHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+ + GC L+ M R GRLE A K+ S DVV
Sbjct: 94 AKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVF--DXSSQRDVVS 151
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEME 371
L+ + G+V +V + E +
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERD 179
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 206/404 (50%), Gaps = 50/404 (12%)
Query: 59 HSPLRPLF---------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109
HSP+ F D T+ FL+ + + LG + HA I G +V T+L
Sbjct: 43 HSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSL 102
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
+NMY S G L + ++FDE ++L WN ++ K G + +AR LF+EMP RNV+SW+
Sbjct: 103 LNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWS 162
Query: 170 GILDGYT---------------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
+++GY ++ + N P++ T+ VL A + GA+ + +H
Sbjct: 163 CLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHS 222
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
Y +K G DI + LID YAKCG + A ++F+ + +K++ +++++I AM+G+
Sbjct: 223 YIDKYGVE-IDIVLGTALIDMYAKCGSLERAKRVFDALG-SKKDVKAYSAMICCLAMYGL 280
Query: 275 GKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGL----------------------HY 311
+ F M + PN VTF+ +L AC H GL HY
Sbjct: 281 TDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHY 340
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VD+ GR+G +++AE +P E DV++ LL G+++ E ++++E++
Sbjct: 341 GCMVDLYGRSGLIKEAESFIASMPME-PDVLIWGSLLSGSRMLGDIKTCEGALKRLIELD 399
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N G YVL+ N+ A GR+++ +R+R M+ + K PG S V
Sbjct: 400 PMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYV 443
>gi|297800844|ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314142|gb|EFH44565.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 458
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 202/376 (53%), Gaps = 48/376 (12%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
S +RP D FT ++R C G +H + K+GF + ++V +ALV MYV LG
Sbjct: 108 ESNVRP--DDFTLPLVLRACSASREAKFGDLIHVLCLKLGFNASLFVRSALVIMYVDLGE 165
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ + KLFD++P R+ V + M G V+ GE ++F EM ++G L
Sbjct: 166 ILHARKLFDDMPVRDSVLYTAMFGGYVQQGEALLGLAVFREM------RYSGFL------ 213
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
+ ++++L A Q GA+++ + +HG+ +R + F + + N + D Y K
Sbjct: 214 ---------LDSVVMVSLLMACGQLGALKHGKSVHGWCIRRC-SCFGLNLGNAITDMYVK 263
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
C + A +F +++ R++++SW+S+I G+ + G +++ F+ M + G++PN VTFL
Sbjct: 264 CSILDYAHTVF--VNMPRRDVISWSSLILGYGLDGDVVVSIKLFDEMLQEGIEPNAVTFL 321
Query: 299 SVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
VL+AC+HGGL HY + D + RAG LE+AEK +P E
Sbjct: 322 GVLSACAHGGLVEKSWLYLRLMQEYKIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVE 381
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
+ V+ +L G C +GNVE+GERV RK++++E G YV + + + GR+ +AE L
Sbjct: 382 PDEAVLGAVLSG-CKVYGNVEVGERVARKLIQLEPRKGSYYVTLAGLYSAAGRFDEAESL 440
Query: 398 RRVMDERNALKFPGRS 413
R++M E+ K PG S
Sbjct: 441 RQLMKEKQISKVPGCS 456
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 128/283 (45%), Gaps = 30/283 (10%)
Query: 101 SHVYVNTALVNMYVSLGFLKDSS-KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
S+V +++ LV Y + L +S +F +P RN+ +WN++I E++RS F
Sbjct: 45 SNVVLSSKLVLAYSKMNHLFPTSLSVFWHMPCRNIFSWNIIIG--------EFSRSGFAS 96
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
+ + + RM R ++ P + T+ VL A + + LIH K
Sbjct: 97 IS----------IGMFLRMWRE--SNVRPDDFTLPLVLRACSASREAKFGDLIHVLCLKL 144
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
GFNA + V + L+ Y G I A KLF+D+ V ++ V +T++ G+ G +
Sbjct: 145 GFNA-SLFVRSALVIMYVDLGEILHARKLFDDMPV--RDSVLYTAMFGGYVQQGEALLGL 201
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
F M+ G + V +S+L AC G L +G V + + L + + I
Sbjct: 202 AVFREMRYSGFLLDSVVMVSLLMACGQLGALKHGKSV----HGWCIRRCSCFGLNLGNAI 257
Query: 339 TDVVVR-RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
TD+ V+ IL A + N+ + ++ L + G GD V+
Sbjct: 258 TDMYVKCSILDYAHTVFVNMPRRDVISWSSLILGYGLDGDVVV 300
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 215/456 (47%), Gaps = 78/456 (17%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++N L+ + P ++ Y ++ + S SP S+TYS L++ S
Sbjct: 842 NVFVYNALIKGFVTCSHPIRSLEFYVRMLR---DSVSP-----SSYTYSSLVQASAFAS- 892
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER----------- 132
G L A I K GF HV + T L+ Y + G ++++ K+FDE+PER
Sbjct: 893 -GFGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSA 951
Query: 133 --------------------NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
N TWN +I G + G LE A SLF +MP ++++SWT ++
Sbjct: 952 YRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMI 1011
Query: 173 DGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
+GY+R R A P E+T+ V+ A G + + +H Y + GF
Sbjct: 1012 NGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGF- 1070
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
D+ + + L+D Y+KCG + AL +F ++ +KNL W SII G A HG + A++ F
Sbjct: 1071 VLDVYIGSALVDMYSKCGSLERALLVF--FNLPKKNLFCWNSIIEGLAAHGFAQEALKMF 1128
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
+M+ +KPN VTF+SV AC+H GL HYGC+V + +
Sbjct: 1129 AKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSK 1188
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG + +A ++ + E + V+ LL C H N+E+ E K++ +E N G Y L
Sbjct: 1189 AGLIYEALELIGSMEFE-PNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFL 1247
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKF-PGRSLV 415
+ ++ A R+ D +R M E K PG S +
Sbjct: 1248 LVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 1283
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 138/481 (28%), Positives = 240/481 (49%), Gaps = 92/481 (19%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP------ 61
T +IH+H +T N+L + + + +L F++L SP+ F + + ++TH +P
Sbjct: 4 TKQIHAHAIT-NNLTRFSYISSRILAFFAL--SPRGDF---RYAETLFTHIPNPNIFDYN 57
Query: 62 --------------------------LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
+RP +S T++ L++ CV+LS Q+ +
Sbjct: 58 SIITSYTTNSQFHKLFFVFTKMLNTNIRP--NSHTFTTLVKACVSLSSLE---QVFTLSM 112
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
K+G S VY ++++N + + + ++FDE RN+V W +++G G + AR
Sbjct: 113 KLGNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARD 172
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI-------------------TILAV 196
+F++MP RN S++ ++ GY R NG +E ++ +++V
Sbjct: 173 VFDKMPLRNEASYSAMVSGYVR----NGFFSEGVQLFRELKKKDKGCACLKFNGALLVSV 228
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A GA + IH Y E+ G +D+ + LID Y KCG + A K+F + V
Sbjct: 229 LNACTMVGAFEEGKWIHSYVEENGLE-YDLELGTALIDFYMKCGWVKGAEKVFNKMPV-- 285
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K++ +W+++I G A++G K A+E FE+M+KVG KPN VTF+ VL AC+H L
Sbjct: 286 KDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESARL 345
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HYGC+VD+L R+G++++A + E D + LL C H
Sbjct: 346 FGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALTFINSMHIE-PDGAIWGSLLNGCLMH 404
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
G+ E+G++V + ++E E + G YVL+ N+ A +G++ +R++M +R + G S
Sbjct: 405 GHYELGQKVGKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVMIVSGWSF 464
Query: 415 V 415
+
Sbjct: 465 I 465
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 212/435 (48%), Gaps = 60/435 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC------- 78
L N LL + P AF +++L PL P D ++++FL+R
Sbjct: 80 LAHNGLLRALARGPCPGLAFAAFREL---------PLAP--DHYSFTFLVRAATSLAAAA 128
Query: 79 ------VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
++ L +HA + G + +V + V+MY ++G + F E+
Sbjct: 129 SATPVPTDVAVNLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSP 188
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS----------N 182
++V M+ L G+++ AR LF+ MP R+ V+W +L GY R+ RS
Sbjct: 189 DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQ 248
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
A SE+T+++VL A Q GA+ +H Y RG + + L+D Y+KCG +
Sbjct: 249 KAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMR-VSVTLGTALVDMYSKCGVV 307
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
++++FE ++ +N+ +WTS +SG AM+GMG+ +E F+RM+ G++PN VTF++VL
Sbjct: 308 TMSMEVFE--TMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLR 365
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
CS GL HYGC+VD+ GRAGRL+ A +P E +
Sbjct: 366 GCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHE 425
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V LL A H NV++G+ K+ E+E N +VL+ NI A + ++R +
Sbjct: 426 -GVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNM 484
Query: 401 MDERNALKFPGRSLV 415
M + K PG S +
Sbjct: 485 MKSKGVKKMPGCSAI 499
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 69/429 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL Y++A A L+ ++ +TH T++ LIR + G
Sbjct: 125 YNALLAGYAVAGDMDGALALFGGMRS-WTH-----------VTWATLIR-----GFAEKG 167
Query: 88 TQLHA----VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
A + G ++ V T LV YV G ++ + ++FD +P RN W+ M+TG
Sbjct: 168 DMAEARRWFEATPPGMRT-VVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTG 226
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITI 193
K G+ E AR++F+ +P RN+V+W ++ GY ++ S A +P E T+
Sbjct: 227 YFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTM 286
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR----VSNCLIDTYAKCGCIFSALKLF 249
++L A Q G++ + +H + N IR V N LID YAKCG + A +F
Sbjct: 287 ASLLSACAQLGSLEQGKKVHDF-----INQEHIRKNHFVMNGLIDMYAKCGDLAHARYIF 341
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ S+ KN W ++IS A HG A+ F +M++ G KPN +T L+VL AC+HGG
Sbjct: 342 D--SMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGF 399
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGCLVD+LGRAG+L++A +I + E +V+ LL
Sbjct: 400 VDEGLQIFNKLDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGS-LL 458
Query: 349 GACSFHGNVEMGERVTRKVLEME----RGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
GAC H + EM VT ++L + N +Y+++ NI+A R+ AE++RR M R
Sbjct: 459 GACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARR 518
Query: 405 NALKFPGRS 413
K PG S
Sbjct: 519 GVEKTPGCS 527
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 150/318 (47%), Gaps = 29/318 (9%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
N +H+ +T++S H + L+ Y+ ++A L+Y + TH H PL P+
Sbjct: 3 NRARPLHAIYMTSSS--HDPDKWAHLVKEYASQSLVREAALVYARNLPRRTH-HQPLLPV 59
Query: 66 FDSFTYSFLIRTCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
L++ S LG LHA K F + V T +V+MY G L D+
Sbjct: 60 --------LLKAAAASSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADAR 111
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+ FDE+P+RN++++N ++ G G+++ A +LF M V+W ++ G+
Sbjct: 112 RAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAE 171
Query: 184 A-----STEPSEITILA---VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
A +T P T++ ++ G + + + R NAF V + ++
Sbjct: 172 ARRWFEATPPGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPAR--NAF---VWSSMVTG 226
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y K G A +F+ I +NLV+W ++I+G+A G + A+E F M + +KP+
Sbjct: 227 YFKAGDAEEARAVFDRIPT--RNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEF 284
Query: 296 TFLSVLNACSH-GGLHYG 312
T S+L+AC+ G L G
Sbjct: 285 TMASLLSACAQLGSLEQG 302
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 198/364 (54%), Gaps = 47/364 (12%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
++ C + + G LH V+ K+G V +L+NMY LGFL +S+LF+E+P R+
Sbjct: 227 VVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS 286
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
LV+WN M+ G E LF N++ GI P + T+
Sbjct: 287 LVSWNSMVVIHNHNGYAEKGMDLF------NLMKRAGI---------------NPDQATM 325
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+A+L A G R + IH Y + GFNA DI ++ L++ YAK G + ++ +FE+I
Sbjct: 326 VALLRACTDTGLGRQAESIHAYIHRCGFNA-DIIIATALLNLYAKLGRLNASEDIFEEI- 383
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+ ++ ++WT++++G+A+H G+ A++ F+ M K G++ + VTF +L+ACSH GL
Sbjct: 384 -KDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEG 442
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGR+GRLE A ++ +P E + V LLGAC
Sbjct: 443 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVW-GALLGAC 501
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
+GNVE+G+ V ++L ++ + +Y+++ NI + G + DA ++R +M ER + PG
Sbjct: 502 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPG 561
Query: 412 RSLV 415
S +
Sbjct: 562 CSFI 565
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 178/385 (46%), Gaps = 82/385 (21%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
F I +C ++SY + +HA + K S ++ LV+MY LG+ +D+ +LFDE+P +
Sbjct: 127 FAISSCTSVSY---CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
+LV+WN +++GL G L L+ + RM +G +P+E+T
Sbjct: 184 DLVSWNSLMSGLSGRGYL------------------GACLNAFCRMRTESG--RQPNEVT 223
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+L+V+ A GA+ + +HG K G + +V N LI+ Y K G + +A +LFE++
Sbjct: 224 LLSVVSACADMGALDEGKSLHGVVVKLGMSG-KAKVVNSLINMYGKLGFLDAASQLFEEM 282
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH-- 310
V ++LVSW S++ +G + ++ F M++ G+ P++ T +++L AC+ GL
Sbjct: 283 PV--RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQ 340
Query: 311 --------YGC-----------LVDMLGRAGRLEQAEKIALGIPS--------------- 336
+ C L+++ + GRL +E I I
Sbjct: 341 AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAV 400
Query: 337 --------EITDVVVRR----------ILLGACSFHGNVEMGERVTRKVLEMERGNG--G 376
++ D++V+ LL ACS G VE G++ + E+ R
Sbjct: 401 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 460
Query: 377 DYVLMYNILAGVGRYVDAERLRRVM 401
Y M ++L GR DA L + M
Sbjct: 461 HYSCMVDLLGRSGRLEDAYELIKSM 485
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T L+R C +HA I + GF + + + TAL+N+Y LG L S +F
Sbjct: 321 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 380
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
+E+ +R+ + W M+ G A LF+ M
Sbjct: 381 EEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLM 414
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 215/423 (50%), Gaps = 61/423 (14%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
+ +L+N +++ Y+ +A +++++ + +P R FT + ++ +
Sbjct: 173 IRDVVLWNAMINGYAKIGCLDEALEVFRRM---HVKGVAPSR-----FTITGILSVFASR 224
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+ G +H ++ K+G+ S V V+ AL++MY + D+ +F+ + E+++ +WN +I
Sbjct: 225 GDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSII 284
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+ + G+ + LF++M G+ P +TI VLPA
Sbjct: 285 SVHEQCGDHDGTLRLFDKML---------------------GSGILPDLVTITTVLPACS 323
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFD-------IRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A+ + + IHGY G D + VSN ++D YAKCG + +ALK+F+ +S
Sbjct: 324 HLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMS- 382
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+K++ SW +I G+ MHG A+ F +M + KPN VT + VL+AC+H G
Sbjct: 383 -KKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGR 441
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HY C++DMLGRAG LE A +I +P + + VV R LLGAC
Sbjct: 442 LFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQ-ANPVVWRALLGACR 500
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGN E+ E R+VL++E + G YVLM N+ +GRY + +R+ M E+N K PG
Sbjct: 501 LHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGC 560
Query: 413 SLV 415
S +
Sbjct: 561 SWI 563
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 135/279 (48%), Gaps = 35/279 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + K F YK+++ + P D +T+ ++RTC +
Sbjct: 81 YNAIISGFVSNGLASKGFQFYKKMRL------EGVMP--DKYTFPCVVRTCCEVMEVK-- 130
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + K+G + V+V +ALVN Y+ G ++D+ K+F EL R++V WN MI G K
Sbjct: 131 -KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKI 189
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G L+ A +F M + V PS TI +L G +
Sbjct: 190 GCLDEALEVFRRMHVKGVA---------------------PSRFTITGILSVFASRGDLD 228
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
N + +HG K G+++ + VSN LID Y KC I AL +FE I+ K++ SW SIIS
Sbjct: 229 NGKTVHGIVMKMGYDS-GVSVSNALIDMYGKCKHIGDALIIFEMIN--EKDIFSWNSIIS 285
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
G + F++M G+ P+ VT +VL ACSH
Sbjct: 286 VHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSH 324
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 29/241 (12%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPER 132
+++C N G QLH+++ GF T+L+NMY G + ++ +F D ER
Sbjct: 17 FLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHER 76
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
N+ +N +I+G V G +++M V+ P + T
Sbjct: 77 NVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVM---------------------PDKYT 115
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
V+ + V + IHG K G D+ V + L++TY K G + A K+F ++
Sbjct: 116 FPCVVRTCCE---VMEVKKIHGCLLKMGLE-LDVFVGSALVNTYLKNGSMEDAQKVFGEL 171
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA-CSHGGLHY 311
S+ +++V W ++I+G+A G A+E F RM G+ P+R T +L+ S G L
Sbjct: 172 SI--RDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDN 229
Query: 312 G 312
G
Sbjct: 230 G 230
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 21/118 (17%)
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LI+ Y+KCG + A+ +F D ER N+ ++ +IISGF +G+ + +++M+ G+
Sbjct: 52 LINMYSKCGQMGEAILVFYDPCHER-NVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVM 110
Query: 292 PNRVTFLSVLNACSH----GGLHYGCLVDM-------LGRA--------GRLEQAEKI 330
P++ TF V+ C +H GCL+ M +G A G +E A+K+
Sbjct: 111 PDKYTFPCVVRTCCEVMEVKKIH-GCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKV 167
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 232/442 (52%), Gaps = 46/442 (10%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFT 70
++++ + S + + FNT+++ ++ F ++ +++ + +RP D +T
Sbjct: 170 VNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGV------CVRP--DEYT 221
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISK-VG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
+ L+ C L +G Q+H ++ + +G F +V + LV+MY G L + +
Sbjct: 222 FVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSV 281
Query: 129 L-PERNLVT-WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------- 179
+ P +++V W +++ GE++ AR LF++M R+VVSWT ++ GY+
Sbjct: 282 VKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALE 341
Query: 180 ---RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIH-GYGEKRGFNAFDIRVSNCLIDT 235
+ G +P E+ ++A L A + GA+ + IH Y + + + ++ ++D
Sbjct: 342 LFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDM 401
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
YAKCG I AL +F S ++K + SIISG A HG G+ A FE M +GLKP+ +
Sbjct: 402 YAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNI 461
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF++VL+AC H GL HYGC+VD+LGRAG L++A ++ L
Sbjct: 462 TFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILK 521
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + + V+ R LL AC HG+V + + +++E++ +G YV++ N+L+ ++ +
Sbjct: 522 MPFK-ANAVIWRALLSACKVHGDVALARVASYELVELQHDHGAGYVMLSNMLSDTDQHDE 580
Query: 394 AERLRRVMDERNALKFPGRSLV 415
A LR+ +D K PG S V
Sbjct: 581 AASLRKAIDNVGIQKPPGWSYV 602
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 188/420 (44%), Gaps = 84/420 (20%)
Query: 26 LLFNTLLHFYSLADSPKK-AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC--VTLS 82
L+N ++ YS SP + F L+K T +S + P DSFT+ FL++ C V +S
Sbjct: 81 FLWNAIIKAYSQIHSPPQHPFSLFK------TMLNSSVLP--DSFTFPFLLKACANVLIS 132
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
P G Q+H + + GF S V+VN AL+N Y G + ++ K+FDE R+ V++N MI
Sbjct: 133 APQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMIN 192
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G + G++ +F EM G P E T +A+L
Sbjct: 193 GFARKGDVSGCFRVFGEM---------------------RGVCVRPDEYTFVALLSGCSV 231
Query: 203 NGAVRNCQLIHG--YGEKRGFNAFDIRVSNCLIDTYAKCG-------------------- 240
R + +HG Y E F ++ + N L+D YAKCG
Sbjct: 232 LEDYRIGRQVHGLVYRELGCFGG-NVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVA 290
Query: 241 ---CIFSALKLFEDISVER--------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
+ SA L ++ V R +++VSWT++ISG++ G + A+E F +++ +G
Sbjct: 291 AWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLG 350
Query: 290 LKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
+KP+ V ++ L+AC+ G L G R R E I T VV +
Sbjct: 351 MKPDEVAVVAALSACARLGALELG------RRIHRQYAGENWTCSINRGFTSAVVD--MY 402
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN-ILAGVGRYVDAERLRRVMDERNAL 407
C G++++ V RK + ++ +YN I++G+ + E + + +E L
Sbjct: 403 AKC---GSIDIALDVFRKTSDDKKTT-----FLYNSIISGLAHHGRGEYAKNLFEEMGLL 454
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 98/446 (21%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P DSFTYSFLI+ + +H+ + K+G +V AL++ Y G D+
Sbjct: 2 PRRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60
Query: 124 K-------------------------------LFDELPERNLVTWNVMITGLVKWGELEY 152
K LFDE+PE++ V+WN ++ G K GE+E
Sbjct: 61 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120
Query: 153 ARSLFEEMPCRNVVSWTGILDGY-------------TRMNRSN----------------- 182
A LF+ MP RNVVSW+ ++ GY +M N
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180
Query: 183 -----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
AS E ++++L A ++G++ + IH Y KR V N
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNA 239
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LID + KCGC+ A +F+ +V+ K+ VSW SII GFAMHG G A+E F +M++ G
Sbjct: 240 LIDMFCKCGCVNRADYVFDTETVQ-KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFN 298
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+ VT ++VL+AC+H G HYGC++D+LGR G +++A
Sbjct: 299 PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVD 358
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P E +V+ LL AC H NVE E ++ +++ N G+Y ++ NI A G
Sbjct: 359 LIKSMPWEPNEVIWGS-LLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 417
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
++ D + R M + K G S V
Sbjct: 418 QWSDMAKARMQMKGTGSQKTAGSSWV 443
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 69/429 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL Y++A A L+ ++ +TH T++ LIR + G
Sbjct: 125 YNALLAGYAVAGDMDGALALFGGMRS-WTH-----------VTWATLIR-----GFAEKG 167
Query: 88 TQLHA----VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
A + G ++ V T LV YV G ++ + ++FD +P RN W+ M+TG
Sbjct: 168 DMAEARRWFEATPPGMRT-VVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTG 226
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITI 193
K G+ E AR++F+ +P RN+V+W ++ GY ++ S A +P E T+
Sbjct: 227 YFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTM 286
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR----VSNCLIDTYAKCGCIFSALKLF 249
++L A Q G++ + +H + N IR V N LID YAKCG + A +F
Sbjct: 287 ASLLSACAQLGSLEQGKKVHDF-----INQEHIRKNHFVMNGLIDMYAKCGDLAHARYIF 341
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ S+ KN W ++IS A HG A+ F +M++ G KPN +T L+VL AC+HGG
Sbjct: 342 D--SMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGF 399
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGCLVD+LGRAG+L++A +I + E +V+ LL
Sbjct: 400 VDEGLQIFNKLDAYGVGAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGS-LL 458
Query: 349 GACSFHGNVEMGERVTRKVLEME----RGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
GAC H + EM VT ++L + N +Y+++ NI+A R+ AE++RR M R
Sbjct: 459 GACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARR 518
Query: 405 NALKFPGRS 413
K PG S
Sbjct: 519 GVEKTPGCS 527
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 150/318 (47%), Gaps = 29/318 (9%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
N +H+ +T++S H + L+ Y+ ++A L+Y + TH H PL P+
Sbjct: 3 NRARPLHAIYMTSSS--HDPDKWAHLVKEYASQSLLREAALVYARNLPRRTH-HQPLLPV 59
Query: 66 FDSFTYSFLIRTCVTLSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
L++ S LG LHA K F + V T +V+MY G L D+
Sbjct: 60 --------LLKAAAASSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADAR 111
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+ FDE+P+RN++++N ++ G G+++ A +LF M V+W ++ G+
Sbjct: 112 RAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAE 171
Query: 184 A-----STEPSEITILA---VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
A +T P T++ ++ G + + + R NAF V + ++
Sbjct: 172 ARRWFEATPPGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPAR--NAF---VWSSMVTG 226
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y K G A +F+ I +NLV+W ++I+G+A G + A+E F M + +KP+
Sbjct: 227 YFKAGDAEEARAVFDRIPT--RNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEF 284
Query: 296 TFLSVLNACSH-GGLHYG 312
T S+L+AC+ G L G
Sbjct: 285 TMASLLSACAQLGSLEQG 302
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 193/342 (56%), Gaps = 41/342 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+++ + G L + K+FDE+P RNLV+WN M+ G GE+ AR LF+ MP ++VVS
Sbjct: 215 SMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVS 274
Query: 168 WTGILDGYTRMN-----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
WT ++ GY + + ++ P+E+T+++VL A A+ + H +
Sbjct: 275 WTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFI 334
Query: 217 EKRGF---NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
+K + F++ + LID Y+KCG A+K+F S+++KN+ +W ++I+G A++G
Sbjct: 335 DKHKMVLDSEFNLGAA--LIDMYSKCGRTDLAVKIFH--SLDQKNVSAWNALITGLAVNG 390
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
+++++ FE+M++ G KPN +TF+ VL AC+HGGL HY
Sbjct: 391 DVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHY 450
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
GC+VDMLGRAG LE+AE++ +P + DV++ LLGAC H V++ RV ++L +
Sbjct: 451 GCMVDMLGRAGLLEEAEELIRSMPM-VPDVMILGALLGACRMHKRVDVAARVQNEILGLS 509
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
G +VL+ +I A G++ DA R V+ + K G S
Sbjct: 510 TQQSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 160/342 (46%), Gaps = 53/342 (15%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL-SY 83
T L N L+ + + SP+ AF + I +P D FT+ L+++ L S+
Sbjct: 43 TFLHNLLIRASATSPSPRLAFAAFSS---ILRSGDTP-----DRFTFPSLLKSASRLASF 94
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMIT 142
P G Q+HA + G V+V L+ MY + + ++FD +LVTWN M+
Sbjct: 95 PRTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLG 154
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G VK GE+ AR +FE+MP RN VSW+ ++ Y GA + +PAI +
Sbjct: 155 GYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYA------GAGELDVAREMFDEMPAIGR 208
Query: 203 NGAVRNCQLIHGYGE-------KRGFNAFDIR--VS-NCLIDTYAKCGCIFSALKLFEDI 252
N N +I G+ ++ F+ +R VS N ++ YA G + A +LF+ +
Sbjct: 209 NVVSWN-SMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRM 267
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGLKPNRVTFLSVLNACSH-GGLH 310
K++VSWT +ISG+A +E F MQ + + PN VT +SVL+AC+H L
Sbjct: 268 P--EKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALE 325
Query: 311 YG----------------------CLVDMLGRAGRLEQAEKI 330
G L+DM + GR + A KI
Sbjct: 326 EGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKI 367
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 35/202 (17%)
Query: 48 YKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK--VGFQSHVYV 105
Y + +++ S L + T ++ C L+ G HA I K + S +
Sbjct: 288 YTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNL 347
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
AL++MY G + K+F L ++N+ WN +ITGL G++ + +FE+M
Sbjct: 348 GAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQM----- 402
Query: 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
R +G +P+ IT + VL A G V G F
Sbjct: 403 --------------RRSG--EKPNGITFVGVLTACAHGGLV-----------DEGRRCFQ 435
Query: 226 IRVSNCLIDTYAK-CGCIFSAL 246
S C + AK GC+ L
Sbjct: 436 SMASTCGVQPEAKHYGCMVDML 457
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 210/411 (51%), Gaps = 42/411 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ YS + K+A LL+ +++ L +S T + ++ CV +
Sbjct: 284 LWNAMIAGYSQNEHDKEALLLFIGMEE-------SAGLLANSTTMAGVVPACVRSGAFSR 336
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
+H + K G +V L++MY LG + + ++F ++ +R+LVTWN MITG V
Sbjct: 337 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 396
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
E A L +M +N+ + G +R+ S +P+ IT++ +LP+ A+
Sbjct: 397 SEHHEDALLLLHKM--QNLER--KVSKGASRV------SLKPNSITLMTILPSCAALSAL 446
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y K A D+ V + L+D YAKCGC+ + K+F+ I +KN+++W II
Sbjct: 447 AKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVII 503
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+ MHG G+ A++ M G+KPN VTF+SV ACSH G+
Sbjct: 504 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 563
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HY C+VD+LGRAGR+++A ++ +P + LLGA H N+E+GE
Sbjct: 564 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 623
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++++E YVL+ NI + G + A +RR M E+ K PG S +
Sbjct: 624 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 674
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 58/323 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT S ++ C L G +LHA K G + +V +ALV+MY + + ++
Sbjct: 214 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 273
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + +R + WN MI G + + A LF M G+L T
Sbjct: 274 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME-----ESAGLLANST--------- 319
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+ V+PA ++GA + IHG+ KRG + D V N L+D Y++ G I A
Sbjct: 320 ------TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIA 372
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAA------VENFER-----MQKVGLKPNR 294
+++F + E ++LV+W ++I+G+ + A ++N ER +V LKPN
Sbjct: 373 MRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 430
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+T +++L +C+ L G LVDM + G L+ + K+
Sbjct: 431 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 490
Query: 334 IPSEITDVVVRRILLGACSFHGN 356
IP + +V+ +++ A HGN
Sbjct: 491 IPQK--NVITWNVIIMAYGMHGN 511
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 33/246 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKL 125
D++ + L++ L LG Q+HA + K G+ V V LVN+Y G K+
Sbjct: 9 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + ERN V+WN +I+ L + + E A F M NV
Sbjct: 69 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-------------------- 108
Query: 186 TEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCG 240
EPS T+++V+ A G + Q +H YG ++G N+F I N L+ Y K G
Sbjct: 109 -EPSSFTLVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLG 163
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ L S ++LV+W +++S + A+E M G++P+ T SV
Sbjct: 164 KLASSKVLLG--SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 221
Query: 301 LNACSH 306
L ACSH
Sbjct: 222 LPACSH 227
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 110/245 (44%), Gaps = 28/245 (11%)
Query: 68 SFTYSFLIRTCVTLSYPN---LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
SFT ++ C L P +G Q+HA + G + +NT LV MY LG L S
Sbjct: 112 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKV 170
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
L R+LVTWN +++ L + +L A EM +L+G
Sbjct: 171 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM----------VLEG---------- 210
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E TI +VLPA +R + +H Y K G + V + L+D Y C + S
Sbjct: 211 -VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 269
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNA 303
++F+ + + L W ++I+G++ + K A+ F M++ GL N T V+ A
Sbjct: 270 GRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 327
Query: 304 CSHGG 308
C G
Sbjct: 328 CVRSG 332
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 210/411 (51%), Gaps = 42/411 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ YS + K+A LL+ +++ L +S T + ++ CV +
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEE-------SAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
+H + K G +V L++MY LG + + ++F ++ +R+LVTWN MITG V
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
E A L +M +N+ + G +R+ S +P+ IT++ +LP+ A+
Sbjct: 484 SEHHEDALLLLHKM--QNLER--KVSKGASRV------SLKPNSITLMTILPSCAALSAL 533
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y K A D+ V + L+D YAKCGC+ + K+F+ I +KN+++W II
Sbjct: 534 AKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVII 590
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+ MHG G+ A++ M G+KPN VTF+SV ACSH G+
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 650
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HY C+VD+LGRAGR+++A ++ +P + LLGA H N+E+GE
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++++E YVL+ NI + G + A +RR M E+ K PG S +
Sbjct: 711 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 58/323 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT S ++ C L G +LHA K G + +V +ALV+MY + + ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + +R + WN MI G + + A LF M G+L T
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME-----ESAGLLANST--------- 406
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+ V+PA ++GA + IHG+ KRG + D V N L+D Y++ G I A
Sbjct: 407 ------TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIA 459
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV------ENFER-----MQKVGLKPNR 294
+++F + E ++LV+W ++I+G+ + A+ +N ER +V LKPN
Sbjct: 460 MRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+T +++L +C+ L G LVDM + G L+ + K+
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577
Query: 334 IPSEITDVVVRRILLGACSFHGN 356
IP + +V+ +++ A HGN
Sbjct: 578 IPQK--NVITWNVIIMAYGMHGN 598
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 33/246 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKL 125
D++ + L++ L LG Q+HA + K G+ V V LVN+Y G K+
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + ERN V+WN +I+ L + + E A F M NV
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-------------------- 195
Query: 186 TEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCG 240
EPS T+++V+ A G + Q +H YG ++G N+F I N L+ Y K G
Sbjct: 196 -EPSSFTLVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLG 250
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ L S ++LV+W +++S + A+E M G++P+ T SV
Sbjct: 251 KLASSKVLLG--SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 301 LNACSH 306
L ACSH
Sbjct: 309 LPACSH 314
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 124/288 (43%), Gaps = 49/288 (17%)
Query: 68 SFTYSFLIRTCVTLSYPN---LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
SFT ++ C L P +G Q+HA + G + +NT LV MY LG L S
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKV 257
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
L R+LVTWN +++ L + +L A EM +L+G
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM----------VLEG---------- 297
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E TI +VLPA +R + +H Y K G + V + L+D Y C + S
Sbjct: 298 -VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNA 303
++F+ + + L W ++I+G++ + K A+ F M++ GL N T V+ A
Sbjct: 357 GRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414
Query: 304 CSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKI 330
C G +H L+DM R G+++ A +I
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 462
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 210/411 (51%), Gaps = 42/411 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ YS + K+A LL+ +++ L +S T + ++ CV +
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEE-------SAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
+H + K G +V L++MY LG + + ++F ++ +R+LVTWN MITG V
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
E A L +M +N+ + G +R+ S +P+ IT++ +LP+ A+
Sbjct: 484 SEHHEDALLLLHKM--QNLER--KVSKGASRV------SLKPNSITLMTILPSCAALSAL 533
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y K A D+ V + L+D YAKCGC+ + K+F+ I +KN+++W II
Sbjct: 534 AKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVII 590
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+ MHG G+ A++ M G+KPN VTF+SV ACSH G+
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 650
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HY C+VD+LGRAGR+++A ++ +P + LLGA H N+E+GE
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++++E YVL+ NI + G + A +RR M E+ K PG S +
Sbjct: 711 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 58/323 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT S ++ C L G +LHA K G + +V +ALV+MY + + ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + +R + WN MI G + + A LF M G+L T
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME-----ESAGLLANST--------- 406
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+ V+PA ++GA + IHG+ KRG + D V N L+D Y++ G I A
Sbjct: 407 ------TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIA 459
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV------ENFER-----MQKVGLKPNR 294
+++F + E ++LV+W ++I+G+ + A+ +N ER +V LKPN
Sbjct: 460 MRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+T +++L +C+ L G LVDM + G L+ + K+
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577
Query: 334 IPSEITDVVVRRILLGACSFHGN 356
IP + +V+ +++ A HGN
Sbjct: 578 IPQK--NVITWNVIIMAYGMHGN 598
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 33/246 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKL 125
D++ + L++ L LG Q+HA + K G+ V V LVN+Y G K+
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + ERN V+WN +I+ L + + E A F M NV
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-------------------- 195
Query: 186 TEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCG 240
EPS T+++V+ A G + Q +H YG ++G N+F I N L+ Y K G
Sbjct: 196 -EPSSFTLVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLG 250
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ L S ++LV+W +++S + A+E M G++P+ T SV
Sbjct: 251 KLASSKVLLG--SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 301 LNACSH 306
L ACSH
Sbjct: 309 LPACSH 314
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 124/288 (43%), Gaps = 49/288 (17%)
Query: 68 SFTYSFLIRTCVTLSYPN---LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
SFT ++ C L P +G Q+HA + G + +NT LV MY LG L S
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKV 257
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
L R+LVTWN +++ L + +L A EM +L+G
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM----------VLEG---------- 297
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E TI +VLPA +R + +H Y K G + V + L+D Y C + S
Sbjct: 298 -VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNA 303
++F+ + + L W ++I+G++ + K A+ F M++ GL N T V+ A
Sbjct: 357 GRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414
Query: 304 CSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKI 330
C G +H L+DM R G+++ A +I
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 462
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 209/410 (50%), Gaps = 55/410 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L+ ++ P+KA L Q+ ++S +P D FT S L+ C L G
Sbjct: 419 WNALIGGHAQNGDPRKALHLLFQM------TYSGQQP--DWFTISSLLLACAHLKSLQYG 470
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H + + G ++ +V T+L++ Y+ G + LFD + ++NLV+WN MI+G +
Sbjct: 471 KEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQN 530
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + +LF R + S G + EI I++V A Q A+R
Sbjct: 531 GLPYESLALF-------------------RKSLSEG--IQSHEIAIVSVFGACSQLSALR 569
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ HGY K D V +ID YAK GCI + K+F+ ++ KN+ SW +II
Sbjct: 570 LGKEAHGYVLK-ALQTEDAFVGCSIIDMYAKSGCIKESRKVFD--GLKDKNVASWNAIIV 626
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
+HG GK A+E +ERM+KVG P+R T++ +L AC H GL
Sbjct: 627 AHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIE 686
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HY CL+DML RAGRL+ A ++ +P E D + LL +C G +E+GE+V +
Sbjct: 687 PKLEHYACLIDMLARAGRLDDALRLVNEMPEE-ADNRIWSSLLRSCRTFGALEIGEKVAK 745
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K+LE+E +YVL+ N+ AG+G++ R+R++M E K G S +
Sbjct: 746 KLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWI 795
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 29/262 (11%)
Query: 47 LYKQLQQIYTH--SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104
LY + +++ S + +P D+FT+ +I+ C + LG +H ++ K+G V+
Sbjct: 125 LYGDVVKVFMDLVSDTDFQP--DNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVF 182
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
V ALV MY G + ++ K+FD +PE NLV+WN MI + G ++R F+ +
Sbjct: 183 VGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENG---FSRDSFDLL--ME 237
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
++ G+L P +T++ +LP G V IHG K G +
Sbjct: 238 MLGEEGLL---------------PDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE- 281
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
++ V+N ++ Y+KCG + A F + KN+VSW ++IS F++ G A +
Sbjct: 282 EVMVNNAMVYMYSKCGYLNEAQMSF--VKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQE 339
Query: 285 MQKVG--LKPNRVTFLSVLNAC 304
MQ G +K N VT L+VL AC
Sbjct: 340 MQIQGEEMKANEVTILNVLPAC 361
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 25/238 (10%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV-NTALVNMYVSLGFLKDSSKLFDELPE 131
L++ C G +LH +S + YV NT L+ MY G DS +FD +
Sbjct: 48 LLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMET 107
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
+NL+ WN +++G + G +F M+ + +P
Sbjct: 108 KNLIQWNALVSGYTRNGLYGDVVKVF--------------------MDLVSDTDFQPDNF 147
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T +V+ A VR ++IHG K G D+ V N L+ Y KCG + A+K+F+
Sbjct: 148 TFPSVIKACGGILDVRLGEVIHGMVIKMGL-VLDVFVGNALVGMYGKCGAVDEAMKVFD- 205
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENF-ERMQKVGLKPNRVTFLSVLNACSHGG 308
+ NLVSW S+I F+ +G + + + E + + GL P+ VT +++L C+ G
Sbjct: 206 -FMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 165/368 (44%), Gaps = 59/368 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ +SL +AF L +++Q + + T ++ C+
Sbjct: 317 WNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKA------NEVTILNVLPACLDKLQLRSL 370
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+LH + FQ HV ++ A + Y G L + K+F + ++ + +WN +I G +
Sbjct: 371 KELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQN 429
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ A L +M +++G +P TI ++L A +++
Sbjct: 430 GDPRKALHLLFQM------TYSG---------------QQPDWFTISSLLLACAHLKSLQ 468
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IHGY + G D V L+ Y CG SA LF+ ++ KNLVSW ++IS
Sbjct: 469 YGKEIHGYVLRNGLET-DFFVGTSLLSHYIHCGKASSARVLFD--RMKDKNLVSWNAMIS 525
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HG--------- 307
G++ +G+ ++ F + G++ + + +SV ACS HG
Sbjct: 526 GYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTE 585
Query: 308 GLHYGC-LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN----VEMGER 362
GC ++DM ++G ++++ K+ G+ + +V ++ A HG+ +E+ ER
Sbjct: 586 DAFVGCSIIDMYAKSGCIKESRKVFDGLKDK--NVASWNAIIVAHGIHGHGKEAIELYER 643
Query: 363 VTRKVLEM 370
+ +KV +M
Sbjct: 644 M-KKVGQM 650
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 212/408 (51%), Gaps = 54/408 (13%)
Query: 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQ 89
T++ ++ D P +A L+ ++ + ++P + T ++ C + +
Sbjct: 156 TMIGVHAQWDQPNEAVRLFDRMMK-----SENVKP--NEVTLVNVLTACARARDLAMVKR 208
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
+H I + GF HV +NT L+++Y G ++ + LFD+ E+NL +WN+MI G V+
Sbjct: 209 IHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSN 268
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
E A LF EM + + + ++T+ ++L A GA+
Sbjct: 269 YEEALLLFREMQTKGI---------------------KGDKVTMASLLLACTHLGALELG 307
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+ +H Y +K+ + D+ + L+D YAKCG I +A+++F ++ K++++WT++I G
Sbjct: 308 KWLHAYIKKQRIDV-DVALGTALVDMYAKCGSIETAIQVFHEMP--EKDVMTWTALILGL 364
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
AM G + A++ F+ M G+KP+ +TF+ VL ACSH G
Sbjct: 365 AMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPT 424
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYG LVD+LGRAGR+ +AE++ +P D V LLGAC HGN+E ER +++
Sbjct: 425 IEHYGGLVDILGRAGRIAEAEELIKSMPM-APDQFVLGGLLGACRIHGNLEAAERAAKQL 483
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
LE++ + G YVL+ NI ++ +A+R R +M ER K PG S +
Sbjct: 484 LEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQI 531
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 49/313 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D +T+ L ++C S G Q+H +K+GF S Y L+NMY + G L + K+F
Sbjct: 87 DRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVF 143
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D++ ++ +V+W MI +W + A LF+ RM +S +
Sbjct: 144 DKMEDKTVVSWATMIGVHAQWDQPNEAVRLFD------------------RMMKSE--NV 183
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P+E+T++ VL A + + + IH Y ++ GF + ++ L+D Y KCGC+ A
Sbjct: 184 KPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRH-VVLNTVLMDVYCKCGCVQLAR 242
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
LF+ + KNL SW +I+G + A+ F MQ G+K ++VT S+L AC+H
Sbjct: 243 DLFD--KAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300
Query: 307 -GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G L G LVDM + G +E A ++ +P + DV+
Sbjct: 301 LGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEK--DVMTWT 358
Query: 346 ILLGACSFHGNVE 358
L+ + G E
Sbjct: 359 ALILGLAMCGQAE 371
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 183/340 (53%), Gaps = 36/340 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+V +YV+ G + +FDE+P R+ +W+V+I G K G ++ AR LF++MP +N+V+
Sbjct: 184 AMVVVYVNAGDFASARLVFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVT 243
Query: 168 WTGILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
WT +++GY + R EP T++ V+ + Q G+ + Y +
Sbjct: 244 WTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVD 303
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
++ + +V L+D +AKCG + AL F +I E+ + +T++ISG A HG
Sbjct: 304 RKRIERNE-KVLTALVDMHAKCGNVEQALNCFREI--EQPDAYPYTALISGLATHGHSTL 360
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A++ FERM+ ++P+ +TF+ VL ACSH GL HY C+V
Sbjct: 361 ALQVFERMRAQAVRPDPITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVV 420
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
DMLGRAGR+ +A + +P + LL AC H NVE+ E V K+ E+E N
Sbjct: 421 DMLGRAGRIVEAFDMVQTMPMGPHPGAL-GALLSACKTHDNVEIAEIVANKLFELEPRNT 479
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G+Y+L+ NI AG ++ +AER+R +M + K PG + V
Sbjct: 480 GNYILLSNIYAGKEQWEEAERIRSLMRTKLPFKQPGSTWV 519
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 154/397 (38%), Gaps = 99/397 (24%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKL 125
D F+ F + +L G LHA+ ++ + + V ALV++Y L +
Sbjct: 80 DHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVANALVDLYAKCDALPAAHAA 139
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
+P + V++N ++ + + A SLF MP R VSW ++ Y
Sbjct: 140 LASIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYV--------- 190
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
G + +L+ R +++ + LI Y K G + SA
Sbjct: 191 ----------------NAGDFASARLVFDEMPTRDSSSWSV-----LIVGYCKRGSMQSA 229
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+LF+ + KNLV+WT++I+G+A G K ++ F ++ VG++P+ T + V+++ S
Sbjct: 230 RELFDKMP--GKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISSAS 287
Query: 306 HGGLH---------------------YGCLVDMLGRAGRLEQA----------------- 327
G LVDM + G +EQA
Sbjct: 288 QIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDAYPYTA 347
Query: 328 ----------EKIALGI----------PSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
+AL + P IT V V L ACS G V+MG +
Sbjct: 348 LISGLATHGHSTLALQVFERMRAQAVRPDPITFVGV----LTACSHAGLVDMGLDYWEAM 403
Query: 368 LE---MERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
++ M+R Y + ++L GR V+A + + M
Sbjct: 404 VQDYGMDR-RADHYACVVDMLGRAGRIVEAFDMVQTM 439
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 136/455 (29%), Positives = 236/455 (51%), Gaps = 77/455 (16%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQLQQIYT-- 56
R+H+H++ T L T L LL FY D P+K + + + Y+
Sbjct: 73 RVHAHMIKTR-YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQT 131
Query: 57 -HSHSPL-----------RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104
HS L +P + FT++ ++ +C+ S LG Q+H +I K + SH++
Sbjct: 132 GHSSEALTVFAEMMRSDGKP--NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
V ++L++MY G +K++ ++F+ LPER++V+ +I G + G E A +F +
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL---- 245
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
S G S P+ +T ++L A+ + + + H + +R +
Sbjct: 246 ---------------HSEGMS--PNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY 288
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ + N LID Y+KCG + A +LF+++ + +SW +++ G++ HG+G+ +E F
Sbjct: 289 AV-LQNSLIDMYSKCGNLSYARRLFDNMP--ERTAISWNAMLVGYSKHGLGREVLELFRL 345
Query: 285 MQ-KVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDMLGR 320
M+ + +KP+ VT L+VL+ CSHG + HYGC+VDMLGR
Sbjct: 346 MRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGR 405
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AGR+++A + +PS+ T V+ LLGAC H +V++GE V R+++E+E N G+YV+
Sbjct: 406 AGRIDEAFEFIKRMPSKPTAGVLGS-LLGACRVHLSVDIGESVGRRLIEIEPENAGNYVI 464
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ N+ A GR+ D +R +M ++ K PGRS +
Sbjct: 465 LSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWI 499
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 166/361 (45%), Gaps = 62/361 (17%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
L P Y L+ C+ G ++HA + K + Y+ T L+ Y L+D
Sbjct: 46 LGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLED 105
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+ DE+PE+N+V+W MI+ + G A ++F E M RS
Sbjct: 106 ARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAE------------------MMRS 147
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+G +P+E T VL + + + + IHG K +++ I V + L+D YAK G
Sbjct: 148 DG---KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH-IFVGSSLLDMYAKAGQ 203
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A ++FE + +++VS T+II+G+A G+ + A+E F R+ G+ PN VT+ S+L
Sbjct: 204 IKEAREIFE--CLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLL 261
Query: 302 NACS------HGGLHY---------------GCLVDMLGRAGRLEQAEKIALGIPSEITD 340
A S HG + L+DM + G L A ++ +P E T
Sbjct: 262 TALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP-ERTA 320
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEM------ERGNGGDYVLMYNILAGV--GRYV 392
+ +L+G S HG + R+VLE+ E+ D V + +L+G GR
Sbjct: 321 ISWNAMLVGY-SKHG-------LGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRME 372
Query: 393 D 393
D
Sbjct: 373 D 373
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 216/423 (51%), Gaps = 47/423 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L+ Y + A ++K++ Q S L+ FD T + C L +G
Sbjct: 115 WNGLISSYVGNGRFEDAIGVFKRMSQ-----ESNLK--FDEGTIVSTLSACSALKNLEIG 167
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+++ + F+ V + ALV+M+ G L + +FD + ++N+ W M+ G V
Sbjct: 168 ERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVST 226
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
G ++ AR LFE P ++VV WT +++GY + NR + A P ++++L
Sbjct: 227 GRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLL 286
Query: 198 PAIWQNGAVRNCQLIHGY-GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
Q GA+ + IHGY E R D V L+D YAKCGCI +AL++F +I +
Sbjct: 287 TGCAQTGALEQGKWIHGYINENR--VTVDKVVGTALVDMYAKCGCIETALEVFYEI--KE 342
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
++ SWTS+I G AM+GM A++ + M+ VG++ + +TF++VL AC+HGG
Sbjct: 343 RDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKI 402
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGI--PSEITDVVVRRILLGACS 352
H CL+D+L RAG L++AE++ + S+ T V V LL A
Sbjct: 403 FHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAAR 462
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
+GNV++ ERV K+ ++E + + L+ ++ A R+ D +RR M + KFPG
Sbjct: 463 NYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGC 522
Query: 413 SLV 415
S +
Sbjct: 523 SSI 525
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 163/381 (42%), Gaps = 96/381 (25%)
Query: 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL 74
LL T SLL ++N +L + S K L+ +L+ L P D+FT +
Sbjct: 5 LLQTPSLL----MYNKMLKSLADGKSFTKVLALFGELRG------QGLYP--DNFTLPVV 52
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+++ L G ++H K G + YV+ +L+ MY SLG ++ + K+FDE+P+R++
Sbjct: 53 LKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDV 112
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN +I+ V G E A +F+ M S ++ + E TI+
Sbjct: 113 VSWNGLISSYVGNGRFEDAIGVFKRM--------------------SQESNLKFDEGTIV 152
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEK------RGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ L A A++N ++ GE+ F +R+ N L+D + KCGC+ A +
Sbjct: 153 STLSAC---SALKNLEI----GERIYRFVVTEFE-MSVRIGNALVDMFCKCGCLDKARAV 204
Query: 249 FEDIS--------------------------VER---KNLVSWTSIISGFAMHGMGKAAV 279
F+ + ER K++V WT++++G+ A+
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDML 318
E F MQ G++P+ +S+L C+ G L G LVDM
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMY 324
Query: 319 GRAGRLEQAEKIALGIPSEIT 339
+ G +E A ++ I T
Sbjct: 325 AKCGCIETALEVFYEIKERDT 345
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 98/446 (21%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P DSFTYSFLI+ + +H+ + K+G +V AL++ Y G D+
Sbjct: 125 PRRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 183
Query: 124 K-------------------------------LFDELPERNLVTWNVMITGLVKWGELEY 152
K LFDE+PE++ V+WN ++ G K GE+E
Sbjct: 184 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 243
Query: 153 ARSLFEEMPCRNVVSWTGILDGY-------------TRMNRSN----------------- 182
A LF+ MP RNVVSW+ ++ GY +M N
Sbjct: 244 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 303
Query: 183 -----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
AS E ++++L A ++G++ + IH Y KR V N
Sbjct: 304 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNA 362
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LID + KCGC+ A +F+ +V+ K+ VSW SII GFAMHG G A+E F +M++ G
Sbjct: 363 LIDMFCKCGCVNRADYVFDTETVQ-KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFN 421
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+ VT ++VL+AC+H G HYGC++D+LGR G +++A
Sbjct: 422 PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVD 481
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P E +V+ LL AC H NVE E ++ +++ N G+Y ++ NI A G
Sbjct: 482 LIKSMPWEPNEVIWGS-LLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 540
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
++ D + R M + K G S V
Sbjct: 541 QWSDMAKARMQMKGTGSQKTAGSSWV 566
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 195/375 (52%), Gaps = 53/375 (14%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT + ++ + N G +H K+G+ S V V+ +L++MY ++D+ ++F+
Sbjct: 238 FTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 297
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM-NRSNGASTE 187
+ E+++ +WN +++ V G DG R+ +R GA +
Sbjct: 298 MREKDIFSWNSIVS----------------------VHEQCGDHDGTLRLLDRMLGAGIQ 335
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYG-----EKRGFNAFDIRVSNCLIDTYAKCGCI 242
P +T+ VLPA A+ + + IHGY K G + D+ + N +ID YAKCG +
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +FE +S K++ SW +I G+ MHG G A+E F RM +V LKP+ VTF+ VL+
Sbjct: 396 RDAHLVFERMS--NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 453
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH G HY C++DMLGRAG+L++A ++AL +P E +
Sbjct: 454 ACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-AN 512
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
VV R LL AC H + + E ++V E+E + G YVLM N+ VGRY + +R
Sbjct: 513 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHT 572
Query: 401 MDERNALKFPGRSLV 415
M ++N K PG S +
Sbjct: 573 MRQQNVRKTPGCSWI 587
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 42/303 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN ++ + P++ F Y++++ + + P D FT+ I+ C+ +
Sbjct: 107 FNAIISGFITNGFPEEGFEFYQKMR------NEGVIP--DKFTFPCAIKACLDVLEIK-- 156
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H ++ K G + V++ +ALVN Y+ G ++ + F+ELP R++V WN M+ G +
Sbjct: 157 -KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ E +L+ + RMN S PS T+ VL G +
Sbjct: 216 GQFEM------------------VLETFRRMNDE---SVVPSRFTVTGVLSVFAVMGDLN 254
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
N ++IHG+ K G+++ + VSN LID Y KC CI AL++FE + K++ SW SI+S
Sbjct: 255 NGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMREKDIFSWNSIVS 311
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------CLVDMLGR 320
G + +RM G++P+ VT +VL ACSH L +G +V LG+
Sbjct: 312 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 371
Query: 321 AGR 323
G+
Sbjct: 372 DGK 374
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 35/251 (13%)
Query: 60 SPLRPLFDSFTYSFLIRTCV-----TLSYPNL--GTQLHAVISKVGFQSHVYVNTALVNM 112
S + SF + + TC+ + + NL G ++H+ + GF + T+L+NM
Sbjct: 22 SSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM 81
Query: 113 YVSLGFLKDSSKLF-DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
Y + + +F D E N+ +N +I+G + G E +++M V+
Sbjct: 82 YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVI----- 136
Query: 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
P + T + A V + IHG K G D+ + +
Sbjct: 137 ----------------PDKFTFPCAIKACLD---VLEIKKIHGLLFKFGLE-LDVFIGSA 176
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
L++ Y K G + A FE++ + +++V W ++++G+A G + +E F RM +
Sbjct: 177 LVNCYLKFGLMEHAQVAFEELPI--RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVV 234
Query: 292 PNRVTFLSVLN 302
P+R T VL+
Sbjct: 235 PSRFTVTGVLS 245
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T +A L A + + + IH Y GF + +++ LI+ Y+KC + AL +F D
Sbjct: 39 TCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQMNFALSIFSD 97
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
+ E N+ ++ +IISGF +G + E +++M+ G+ P++ TF + AC
Sbjct: 98 PTHE-INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC 149
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA--VISKVGFQ----SHVYVNTALVNMYVSLGFLK 120
D T + ++ C L+ G ++H ++S +G V + A+++MY G ++
Sbjct: 337 DLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMR 396
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+ +F+ + +++ +WN+MI G G A +F M C
Sbjct: 397 DAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRM-CE----------------- 438
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+P E+T + VL A G V + + + A I C+ID + G
Sbjct: 439 ---VQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAG 495
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
+ A +L + +E N V W ++++ +H
Sbjct: 496 QLDEAYELALTMPIE-ANPVVWRALLAACRLH 526
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 40/382 (10%)
Query: 70 TYSFLIRTCVTLSY--PNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLF 126
T+ L+ C S + G LH K+G ++HV V TA++ MY G + + +F
Sbjct: 69 TFIALLSGCGDFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVF 128
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--------- 177
D + +N +TWN MI G ++ G+++ A LF+EMP R ++SWT +++G+ +
Sbjct: 129 DHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALV 188
Query: 178 -MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ EP + I+AVL A GA+ +H Y R F ++RV+N ID +
Sbjct: 189 WFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRN-NVRVNNSSIDLH 247
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+CGC+ A +F+ + E++ +VSW S+I F+ +G ++ F RMQ+ G KPN VT
Sbjct: 248 CRCGCVELAQPVFDHM--EKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVT 305
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F L ACSH GL HYGCLVD+ RAGRLE A + +
Sbjct: 306 FTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSM 365
Query: 335 PSEITDVVVRRILLGACSFHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
P + +VV+ LL AC HG N + ER+ + + + + +YV++ N+ A G++
Sbjct: 366 PMKPNEVVIGS-LLAACRTHGNNTVLAERLMKHLSDTNVKSHSNYVILSNMYAADGKWEG 424
Query: 394 AERLRRVMDERNALKFPGRSLV 415
A ++RR M K PG S +
Sbjct: 425 ASKMRRKMKGLGLKKQPGFSSI 446
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC---SHGGLHYGCLVD 316
+SWTS I+ + +G A + F M+ G++PN +TF+++L+ C S G +G L+
Sbjct: 33 ISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLL- 91
Query: 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
LG+ + V+V ++G S HG V V ME N
Sbjct: 92 ---------HGYACKLGL--DRNHVMVGTAIIGMYSKHGRVSKARLVFD---HMEGKNSM 137
Query: 377 DYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+ M + G+ DA +L M ER + +
Sbjct: 138 TWNTMIDGYMRKGKIDDAYKLFDEMPERGLISW 170
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 202/389 (51%), Gaps = 40/389 (10%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF----QSHVYVNTALVNMYVSLGF 118
R D FT++ ++ C + G +H I+++ ++ + VN ALV +Y G
Sbjct: 289 RVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGN 348
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR- 177
+ + ++FD + +++V+WN +++G V+ L+ A +FEEMP +N +SW ++ GY
Sbjct: 349 IAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408
Query: 178 ---------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
NR +P + T + A + G++++ + +HG+ + GF +
Sbjct: 409 GFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSN-SA 467
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N LI YA+CG + A +F + + + VSW ++IS HG G+ A+E F+RM
Sbjct: 468 GNALITMYARCGAVKEANLMF--LVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAE 525
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
G+ P+R++FL+VL AC+H GL HY L+D+LGRAGR+ +
Sbjct: 526 GIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGE 585
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A + +P E T + IL G C G++E+G ++ +M + G Y+L+ N +
Sbjct: 586 ARDLIKTMPFEPTPSIWEAILSG-CRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYS 644
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
GR+VDA R+R++M +R K PG S +
Sbjct: 645 AAGRWVDAARVRKLMRDRGVKKEPGCSWI 673
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 35/305 (11%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+L N ++ Y+ A A +++ L + LRP D ++++ L+ L P
Sbjct: 121 TVLHNAVISAYARASHAAPAVAVFRSLL-----ASGSLRP--DDYSFTALLSAAGHL--P 171
Query: 85 NLG----TQLHAVISKVGFQSHVYVNTALVNMYV---SLGFLKDSSKLFDELPERNLVTW 137
N+ QL + K G + V+ ALV +Y+ +L +D+ K+ DE+P+++ +TW
Sbjct: 172 NISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTW 231
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTE 187
M+ G V+ G++ ARS+FEE+ + V W ++ GY R
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVP 291
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD---IRVSNCLIDTYAKCGCIFS 244
E T +VL A G + + +HG + N + V+N L+ Y+KCG I
Sbjct: 292 LDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAV 351
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F+++ + K++VSW +I+SG+ AVE FE M N ++++ +++
Sbjct: 352 ARRIFDNM--KSKDVVSWNTILSGYVESSCLDKAVEVFEEMP----YKNELSWMVMVSGY 405
Query: 305 SHGGL 309
HGG
Sbjct: 406 VHGGF 410
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 214/423 (50%), Gaps = 50/423 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N++++ YS ++A L+++++Q++ L P D FT L+ +LG
Sbjct: 203 WNSMINGYSKMGRSEEAVLMFREMQEV------GLEP--DVFTLVGLLSVSTKHGNFDLG 254
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H + G + V AL++MY G LK + +FD++ ++++V+W MI
Sbjct: 255 RFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANH 314
Query: 148 GELEYARSLFEEMPCRNVVSWTGIL-------------DGYTRMNRSNGASTEPSEITIL 194
G ++ A F +MP +NVVSW I+ D + RM S ++ T++
Sbjct: 315 GLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG---VMANDTTLV 371
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A+L + G + + H Y + N +ID YAKCG + +A+ +F +
Sbjct: 372 AILSSCSHMGDLALGKQAHSYIFDNNIT-LSATLCNAIIDMYAKCGALQTAMDVF--FGM 428
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
KN VSW II A+HG GK A+E FE+MQ G+ P+ +TF +L+ACSH GL
Sbjct: 429 PEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ 488
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HY C+VD+LGR G L +A + +P + DVVV LLGAC
Sbjct: 489 HYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVK-PDVVVWSALLGACR 547
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
+GN+ +G+++ +++LE+ R N G YVL+ N+ + R+ D + + +++D+ K
Sbjct: 548 TYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAI 607
Query: 413 SLV 415
S +
Sbjct: 608 SFI 610
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 173/392 (44%), Gaps = 86/392 (21%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+FN L+ YS + P K+ LLY+++ + P + FT F+++ C S
Sbjct: 100 FMFNHLIKGYSNSSDPIKSLLLYRRM------VCDGILP--NQFTIPFVLKACAAKSCYW 151
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +HA K+G SH V A++N+YV+ G + + ++FD++ ER LV+WN MI G
Sbjct: 152 LGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYS 211
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K G E A +F EM EP T++ +L ++G
Sbjct: 212 KMGRSEEAVLMFREM---------------------QEVGLEPDVFTLVGLLSVSTKHGN 250
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE--------------- 250
+ +H + G D V+N L+D YAKCG + A +F+
Sbjct: 251 FDLGRFVHLHMVVTGIE-IDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMIN 309
Query: 251 --------DISVE------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
D ++E KN+VSW SII G+ AV+ F RM G+ N T
Sbjct: 310 AYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTT 369
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+++L++CSH G L G ++DM + G L+ A + G+P
Sbjct: 370 LVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP 429
Query: 336 SEITDVVVRRILLGACSFHG----NVEMGERV 363
+ + V +++GA + HG +EM E++
Sbjct: 430 EK--NAVSWNVIIGALALHGYGKEAIEMFEKM 459
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 140/314 (44%), Gaps = 58/314 (18%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T +LI C++L +HA I G + V LV+ V L L+ + KLFD++
Sbjct: 38 TLHYLIDQCISLKQLK---HVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQI 94
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P+ N +N +I G + + L+ M C GIL P+
Sbjct: 95 PQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVC------DGIL---------------PN 133
Query: 190 EITILAVLPAIWQNGAVRNCQ----LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
+ TI VL A A ++C +H K G + V N +++ Y CG I SA
Sbjct: 134 QFTIPFVLKAC----AAKSCYWLGVCVHAQSFKLGMGSHAC-VQNAILNIYVACGLITSA 188
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++F+DIS + LVSW S+I+G++ G + AV F MQ+VGL+P+ T + +L+ +
Sbjct: 189 RRVFDDIS--ERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVST 246
Query: 306 -HGGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
HG G L+DM + G L+ A+ + + + DVV
Sbjct: 247 KHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDK--DVVSW 304
Query: 345 RILLGACSFHGNVE 358
++ A + HG ++
Sbjct: 305 TCMINAYANHGLID 318
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 190/369 (51%), Gaps = 47/369 (12%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
+T+ ++R+C +LS +LG Q+HA I K + +V TALV+MY FL+D+ +F+
Sbjct: 292 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 351
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
L +R+L W V++ G + G+ E A F +M V +P
Sbjct: 352 LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV---------------------KP 390
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+E T+ + L + + + + +H K G + D+ V++ L+D YAKCGC+ A +
Sbjct: 391 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAG-QSGDMFVASALVDMYAKCGCVEDAEVV 449
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F+ + ++ VSW +II G++ HG G A++ FE M G P+ VTF+ VL+ACSH G
Sbjct: 450 FDGLV--SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMG 507
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HY C+VD+LGRAG+ + E + ++V++
Sbjct: 508 LIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL-TSNVLIWET 566
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+LGAC HGN+E GER K+ E+E +Y+L+ N+ A G + D +R +M R
Sbjct: 567 VLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGV 626
Query: 407 LKFPGRSLV 415
K PG S V
Sbjct: 627 KKEPGCSWV 635
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 57/387 (14%)
Query: 36 SLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
S A+SP + L + +Q Y H+ +R + F ++ LI +L + G +HA +
Sbjct: 63 SSANSP---YPLQEAVQLFYLMRHTRIR--LNQFIFASLISAAASLGDNHYGESIHACVC 117
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
K GF+S + ++ A V MY+ +++ + F + NL + N +++G +
Sbjct: 118 KYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPR 177
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ +++G+ EP+ T +++L G + + IHG
Sbjct: 178 ILIQL----------LVEGF-----------EPNMYTFISILKTCASKGDLNEGKAIHGQ 216
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
K G N D + N L++ YAKCG A K+F +I +++VSWT++I+GF G G
Sbjct: 217 VIKSGINP-DSHLWNSLVNVYAKCGSANYACKVFGEIP--ERDVVSWTALITGFVAEGYG 273
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACS--------------------HGGLHYG-CL 314
+ + F +M G PN TF+S+L +CS G G L
Sbjct: 274 -SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTAL 332
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER-G 373
VDM + LE AE I + D+ +++ + G GE+ + ++M+R G
Sbjct: 333 VDMYAKNRFLEDAETIFNRLIKR--DLFAWTVIVAGYAQDGQ---GEKAVKCFIQMQREG 387
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRV 400
+ + + L+G R + R++
Sbjct: 388 VKPNEFTLASSLSGCSRIATLDSGRQL 414
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 139/309 (44%), Gaps = 48/309 (15%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
+T+ +++TC + N G +H + K G ++ +LVN+Y G + K+F E
Sbjct: 192 YTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 251
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+PER++V+W +ITG V G R +F +M + +G+ P
Sbjct: 252 IPERDVVSWTALITGFVAEGYGSGLR-IFNQM----------LAEGFN-----------P 289
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ T +++L + V + +H K + D V L+D YAK + A +
Sbjct: 290 NMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF-VGTALVDMYAKNRFLEDAETI 348
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F + +++L +WT I++G+A G G+ AV+ F +MQ+ G+KPN T S L+ CS
Sbjct: 349 FNRLI--KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 406
Query: 309 -------LH--------------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
LH LVDM + G +E AE + G+ S D V +
Sbjct: 407 TLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSR--DTVSWNTI 464
Query: 348 LGACSFHGN 356
+ S HG
Sbjct: 465 ICGYSQHGQ 473
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 111/261 (42%), Gaps = 50/261 (19%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y+ +KA + Q+Q+ ++P + FT + + C ++ + G QLH++
Sbjct: 367 YAQDGQGEKAVKCFIQMQR------EGVKP--NEFTLASSLSGCSRIATLDSGRQLHSMA 418
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
K G ++V +ALV+MY G ++D+ +FD L R+ V+WN +I G + G+ A
Sbjct: 419 IKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKAL 478
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
FE M LD T P E+T + VL A G +
Sbjct: 479 KAFEAM-----------LD----------EGTVPDEVTFIGVLSACSHMGLIEE------ 511
Query: 215 YGEKRGFNAFD--------IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
K+ FN+ I C++D + G E++ + N++ W +++
Sbjct: 512 --GKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL-TSNVLIWETVL 568
Query: 267 SGFAMHGM----GKAAVENFE 283
MHG +AA++ FE
Sbjct: 569 GACKMHGNIEFGERAAMKLFE 589
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 36/204 (17%)
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P+ +L W+ ++ VK L+ AR + EEMP ++V W N+ ++ P
Sbjct: 22 PDSHL--WSSLVNVYVKCESLQCARQVLEEMPIQDVQQW----------NQKLSSANSPY 69
Query: 190 EITILAVLPAIWQNGAVRNCQLIHG-------------YGE-------KRGFNAFDIRVS 229
+ L + ++ +R Q I YGE K GF + DI +S
Sbjct: 70 PLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFES-DILIS 128
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N + Y K + + + F+ + +E NL S +++SGF ++ G
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIE--NLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186
Query: 290 LKPNRVTFLSVLNAC-SHGGLHYG 312
+PN TF+S+L C S G L+ G
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEG 210
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 199/384 (51%), Gaps = 45/384 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F + LI C LG+QLH++ K G V V+ +L++MY G L+++ +F
Sbjct: 391 DQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIF 450
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+ + ER++V+W MIT + G + AR F++M RNV++W +L Y + +GA
Sbjct: 451 NFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQ----HGAEE 506
Query: 187 E---------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
+ P +T + + GA + I G+ K G D V N
Sbjct: 507 DGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGL-ILDTSVVNA 565
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
+I Y+KCG I A K F+ +S RK+LVSW ++I+G++ HGMGK A+E F+ + G K
Sbjct: 566 VITMYSKCGRISEARKAFDFLS--RKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAK 623
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+ +++++VL+ CSH GL H+ C+VD+LGRAG L +A+
Sbjct: 624 PDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKN 683
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P + T V LL AC HGN ++ E + + +++ G Y+L+ + A G
Sbjct: 684 LIDEMPMKPT-AEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAG 742
Query: 390 RYVDAERLRRVMDERNALKFPGRS 413
+ D+ ++R++M ++ K PG S
Sbjct: 743 KSDDSAQVRKLMRDKGIKKSPGYS 766
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 34/297 (11%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L ++FT+ ++++C L + + QL ++SK Q V TALV+M V G + +SK
Sbjct: 156 LPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASK 215
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR---- 180
F + ++ N M+ G K +++A +F+ MP R+VVSW ++ ++ R
Sbjct: 216 QFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREA 275
Query: 181 ------SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
+G P T + L A + ++ + +H R D V++ +++
Sbjct: 276 LDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLH-VQVIRNLPHIDPYVASAMVE 334
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YAKCGC A ++F S+ +N VSWT +I GF +G +VE F +M+ + ++
Sbjct: 335 LYAKCGCFKEAKRVFS--SLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQ 392
Query: 295 VTFLSVLNACSH-------GGLHYGC--------------LVDMLGRAGRLEQAEKI 330
++++ C + LH C L+ M + G L+ AE I
Sbjct: 393 FALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELI 449
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 52/277 (18%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERN 133
+R+C S LH+ + VG S V++ L++ Y+S G L D+ L DE+ E N
Sbjct: 32 LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RS 181
++T N+M+ G K G L A LF MP R+V SW I+ GY + R
Sbjct: 92 VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151
Query: 182 NGASTEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
G S P+ T V+ + W A++ L+ + + D V L+D
Sbjct: 152 TGDSL-PNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQD-----DPDVQTALVDMLV 205
Query: 238 KCGCIFSALKLFEDI-----------------------------SVERKNLVSWTSIISG 268
+CG + A K F I S+ +++VSW +IS
Sbjct: 206 RCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISA 265
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+ G + A++ M G++P+ T+ S L AC+
Sbjct: 266 LSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACA 302
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 195/375 (52%), Gaps = 53/375 (14%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT + ++ + N G +H K+G+ S V V+ +L++MY ++D+ ++F+
Sbjct: 238 FTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 297
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM-NRSNGASTE 187
+ E+++ +WN +++ V G DG R+ +R GA +
Sbjct: 298 MREKDIFSWNSIVS----------------------VHEQCGDHDGTLRLLDRMLGAGIQ 335
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYG-----EKRGFNAFDIRVSNCLIDTYAKCGCI 242
P +T+ VLPA A+ + + IHGY K G + D+ + N +ID YAKCG +
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +FE +S K++ SW +I G+ MHG G A+E F RM +V LKP+ VTF+ VL+
Sbjct: 396 RDAHLVFERMS--NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 453
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH G HY C++DMLGRAG+L++A ++AL +P E +
Sbjct: 454 ACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-AN 512
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
VV R LL AC H + + E ++V E+E + G YVLM N+ VGRY + +R
Sbjct: 513 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHT 572
Query: 401 MDERNALKFPGRSLV 415
M ++N K PG S +
Sbjct: 573 MRQQNVRKTPGCSWI 587
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 42/303 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN ++ + P++ F Y++++ + + P D FT+ I+ C+ +
Sbjct: 107 FNAIISGFITNGFPEEGFEFYQKMR------NEGVIP--DKFTFPCAIKACLDVLEIK-- 156
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H ++ K G + V++ +ALVN Y+ G ++ + F+ELP R++V WN M+ G +
Sbjct: 157 -KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ E +L+ + RMN S PS T+ VL G +
Sbjct: 216 GQFEM------------------VLETFRRMNDE---SVVPSRFTVTGVLSVFAVMGDLN 254
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
N ++IHG+ K G+++ + VSN LID Y KC CI AL++FE + K++ SW SI+S
Sbjct: 255 NGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMREKDIFSWNSIVS 311
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LHYGCLVDMLGR 320
G + +RM G++P+ VT +VL ACSH +H +V LG+
Sbjct: 312 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 371
Query: 321 AGR 323
G+
Sbjct: 372 DGK 374
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 124/300 (41%), Gaps = 56/300 (18%)
Query: 60 SPLRPLFDSFTYSFLIRTCV-----TLSYPNL--GTQLHAVISKVGFQSHVYVNTALVNM 112
S + SF + + TC+ + + NL G ++H+ + GF + T+L+NM
Sbjct: 22 SSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM 81
Query: 113 YVSLGFLKDSSKLF-DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
Y + + +F D E N+ +N +I+G + G E +++M V+
Sbjct: 82 YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVI----- 136
Query: 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
P + T + A V + IHG K G D+ + +
Sbjct: 137 ----------------PDKFTFPCAIKACLD---VLEIKKIHGLLFKFGLE-LDVFIGSA 176
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
L++ Y K G + A FE++ + +++V W ++++G+A G + +E F RM +
Sbjct: 177 LVNCYLKFGLMEHAQVAFEELPI--RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVV 234
Query: 292 PNRVTFLSVLNACS-HGGLHYG--------------------CLVDMLGRAGRLEQAEKI 330
P+R T VL+ + G L+ G L+DM G+ +E A +I
Sbjct: 235 PSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEI 294
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 22/194 (11%)
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T +A L A + + + IH Y GF + +++ LI+ Y+KC + AL +F D
Sbjct: 39 TCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQMNFALSIFSD 97
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC------- 304
+ E N+ ++ +IISGF +G + E +++M+ G+ P++ TF + AC
Sbjct: 98 PTHE-INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIK 156
Query: 305 -SHGGL-HYGCLVDM-LGRA--------GRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HG L +G +D+ +G A G +E A+ +P I DVV+ ++ +
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP--IRDVVLWNAMVNGYAQ 214
Query: 354 HGNVEMGERVTRKV 367
G EM R++
Sbjct: 215 IGQFEMVLETFRRM 228
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA--VISKVGFQ----SHVYVNTALVNMYVSLGFLK 120
D T + ++ C L+ G ++H ++S +G V + A+++MY G ++
Sbjct: 337 DLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMR 396
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+ +F+ + +++ +WN+MI G G A +F M C
Sbjct: 397 DAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRM-CE----------------- 438
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+P E+T + VL A G V + + + A I C+ID + G
Sbjct: 439 ---VQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAG 495
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
+ A +L + +E N V W ++++ +H
Sbjct: 496 QLDEAYELALTMPIE-ANPVVWRALLAACRLH 526
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 186/343 (54%), Gaps = 39/343 (11%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
+L++ YV G ++D+ LF+++P+R++VTW M+ G K G + A+SLF+ MP R+VV
Sbjct: 256 NSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVV 315
Query: 167 SWTGILDGYTRMNRSNGAST------------EPSEITILAVLPAIWQNGAVRNCQLIHG 214
++ ++ GY + NR + + P E T++ VL AI Q G + IH
Sbjct: 316 AYNSMITGYVQ-NRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHL 374
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
Y F ++ LIDTY+KCG I ++++FE+I E K++ W ++I G A+HG+
Sbjct: 375 YIMDNKFR-LGGKLGVALIDTYSKCGSIQKSMRVFEEI--ENKSIDHWNAMIGGLAIHGL 431
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G++A + +++K +KP+ +TF+ VLNACSH GL HYG
Sbjct: 432 GESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYG 491
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+VD+L R+G +E A+ + +P E DV+ R L ACS H E GE V + +
Sbjct: 492 CMVDILSRSGSIELAKNLIEEMPIEPNDVIW-RTFLTACSNHKEFETGELVAKHLFLQGG 550
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N +VL+ N+ A G + + R+R M ER K PG S +
Sbjct: 551 YNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWI 593
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 186/394 (47%), Gaps = 55/394 (13%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H + + +N L+N ++ +S P+KA LL+ + + D F+
Sbjct: 73 HEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVS--------VDKFSL 124
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
S +++ C L + G Q+H + K G S +Y+ L+ +Y+ G L + ++FD +P
Sbjct: 125 SLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPR 184
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGAST--- 186
R+ V++N MI G VK G +E AR LF+ MP +N++SW ++ GY + R++G +
Sbjct: 185 RDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQ--RADGVNVAKK 242
Query: 187 ------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
E I+ +++ ++G + + + + KR D+ ++D YAK G
Sbjct: 243 LFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKR-----DVVTWATMVDGYAKLG 297
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLS 299
+ A LF+ + + +++V++ S+I+G+ + K A+ F M+K L P+ T +
Sbjct: 298 FVHQAKSLFDRMPL--RDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVI 355
Query: 300 VLNACSH---------------------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
VL+A + GG L+D + G ++++ ++ I ++
Sbjct: 356 VLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKS 415
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
D ++G + HG +GE +L++E+
Sbjct: 416 IDHW--NAMIGGLAIHG---LGESAFDMLLQIEK 444
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 104/251 (41%), Gaps = 29/251 (11%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
L + +N+++ Y K+A ++ +++ S L P D T ++ L
Sbjct: 311 LRDVVAYNSMITGYVQNRYHKEAIGIFNDMEK-----ESHLSP--DETTLVIVLSAIAQL 363
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+ +H I F+ + AL++ Y G ++ S ++F+E+ +++ WN MI
Sbjct: 364 GRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMI 423
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
GL G E A + ++ R S +P +IT + VL A
Sbjct: 424 GGLAIHGLGESAFDMLLQIEKR---------------------SIKPDDITFIGVLNACS 462
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+G V+ L ++ ++ C++D ++ G I A L E++ +E N V
Sbjct: 463 HSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIE-PNDVI 521
Query: 262 WTSIISGFAMH 272
W + ++ + H
Sbjct: 522 WRTFLTACSNH 532
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 212/408 (51%), Gaps = 55/408 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ A S A +Y+++ + + SP RP +SFT +F ++ C + P G
Sbjct: 143 YNSLIRALPAAGS-APALAVYRRMLR----AGSP-RP--NSFTLAFALKACAAVPAPGEG 194
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVK 146
QLHA + G + YV T L+N+Y + + +FD + ++NLV W+ M++G +
Sbjct: 195 RQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSR 254
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G + A LF EM EP E+T+++V+ A + GA+
Sbjct: 255 VGMVNEALGLFREM---------------------QAVGVEPDEVTMVSVISACAKAGAL 293
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +H Y +++G D+ +S LID YAKCG I A +F D VE K+ +W+++I
Sbjct: 294 DLGKWVHAYIDRKGIT-VDLELSTALIDMYAKCGLIERARGVF-DAMVE-KDTKAWSAMI 350
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
GFA+HG+ + A+ F RM ++ ++PN VTF+ VL+AC+H GL
Sbjct: 351 VGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIK 410
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
+YGC+VD+L R+G L+ A +G+P + V+ R LL AC +++ E T+
Sbjct: 411 PSMENYGCMVDLLCRSGLLDDAYSFVIGMPVS-PNSVIWRTLLVACKSSNRIDIAESATK 469
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
++LE+E N +YVL+ N+ A ++ LRR M +N GRS
Sbjct: 470 RLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRS 517
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 227/454 (50%), Gaps = 75/454 (16%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAF--LLYKQLQ-----------QIYT 56
+IH+H++ + L HH + N LL+F +++ S A+ LL+ Q++ + +
Sbjct: 22 KIHAHVIVSG-LHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFA 80
Query: 57 HSHSPLRPLF-------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103
S SP+ + D+FT+SF+++ C + ++H + + G+ + V
Sbjct: 81 QSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADV 140
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163
V T LV Y ++G + + ++FD++P R+LV WN MI+ + G + A + +M
Sbjct: 141 IVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSE 200
Query: 164 NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
NV +DG+ T++ ++ + GA+ +H + + G +
Sbjct: 201 NV-----DVDGF----------------TLVGLISSCAHLGALNIGVQMHRFARENGLDQ 239
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
+ V N LID YAKCG + A+ +F+ ++RK++ +W S+I G+ +HG G A+ F+
Sbjct: 240 -SLYVGNALIDMYAKCGSLDQAILIFD--RMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQ 296
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
+M + ++PN VTFL +L CSH GL HYGCLVD+ GRA
Sbjct: 297 QMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRA 356
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G+L++A +I S D V+ RILLG+C H NV +GE ++ E+ + GD +L+
Sbjct: 357 GKLDKALEIVSN--SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILL 414
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
I AG R+R+++ + PG S +
Sbjct: 415 ATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWI 448
>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
Length = 596
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 193/371 (52%), Gaps = 37/371 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT C L +LH + G + V + A+V+ Y G ++D+ L
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGL 227
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------- 177
FD++ R+ V+W MI G + L+ A +F+ MP ++ ++WT ++ G+ +
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIAL 287
Query: 178 --MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLI 233
R G P+ +++ L A + G V + +HG+ +R G + F++ + N LI
Sbjct: 288 ELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALI 347
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y+KCG + +A+ +F D +ER +++SW S+++GF+ +G GK ++ FERM K ++P
Sbjct: 348 DMYSKCGDMVAAMAVF-DRMLER-DIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPT 405
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTFL+VL ACSH GL HY +D LGR +LE+A +
Sbjct: 406 YVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNHQLEEASEFIK 465
Query: 333 GIPSEITDVVVRR--ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
G+ S+I LLGAC HGN+E+ E V + ++E N G YV++ NI + G+
Sbjct: 466 GLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQ 525
Query: 391 YVDAERLRRVM 401
+ DA ++R +M
Sbjct: 526 WDDARQVRALM 536
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 49/272 (18%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +HA++ K H ++ LV +Y L S FD+LP +N ++N ++ L
Sbjct: 47 LGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALA 106
Query: 146 KW-GELEYARSLFEEMP--CRNVVSWTGILDGYTR-------------MNRSNGASTEPS 189
+ G L A L + MP RNVVS+ ++ R + R G +
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166
Query: 190 EITILAVLPAIWQNGAVRNC---QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
I V+ A +R+ + +HG G I ++N ++D Y+K G + A
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI-MANAMVDAYSKAGRVEDAR 225
Query: 247 KLFEDISVER-----------------------------KNLVSWTSIISGFAMHGMGKA 277
LF+ +++ ++ ++WT++ISG +G +
Sbjct: 226 GLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEI 285
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
A+E FERM G+ P +S L AC+ GL
Sbjct: 286 ALELFERMTGEGVVPTPFALVSCLGACAKVGL 317
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 198/415 (47%), Gaps = 72/415 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY------------- 113
D + SF + +C + + LH+ ++G VYV +A V+ Y
Sbjct: 71 DHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERLF 130
Query: 114 -------------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
+ G L+ + FD +PERN+V+WN M+ G L AR
Sbjct: 131 SYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKAR 190
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP---AIWQNGAVRNCQL 211
LF+ MP RN SW+ ++ G R NR A SE+ + V+P A+ AV C L
Sbjct: 191 KLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESAL--VSAVSACSL 248
Query: 212 ---------IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
+H Y KR + ++ ++D Y KCG I +A+++F + V KN+ SW
Sbjct: 249 LRSLEHGVWVHAYA-KRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPV--KNIYSW 305
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
S+I+G AM+G A+ F +MQ G++PN +TF+ +L ACSH GL
Sbjct: 306 NSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVN 365
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HYG +VD+LGRAG + +A +P E + L GAC HG VE+G
Sbjct: 366 GFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVE-PHPGLWGALAGACKIHGEVELG 424
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E + +K++E+E +G Y+L+ NI R+ D +RR++ +R K G ++V
Sbjct: 425 EEIAKKLIELEPRHGSRYILLSNIYGASNRWDDMATVRRLLKDRKVPKGTGNAMV 479
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 197/388 (50%), Gaps = 44/388 (11%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH----VYVNTALVNMYVSLGFLKD 121
FD TY+ +I C + +G Q+HA I K + + V+ AL+ +Y + +
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT----- 176
+ K+F +P RN++TWN +++G V G +E A+S FEEMP +N+++ T ++ G
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406
Query: 177 -------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
+ R +G EP + L A GA+ N + +H G+ + + V
Sbjct: 407 DEGLKLFKQMRLDG--FEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYES-SLSVG 463
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N +I YAKCG + +A +F +++ +LVSW S+I+ HG G A+E F++M K G
Sbjct: 464 NAMISMYAKCGVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG 521
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
+ P+R+TFL+VL ACSH GL HY +VD+ RAG A
Sbjct: 522 VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA 581
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ +PS+ V LL C HGN+++G ++ ++ N G YVL+ NI A
Sbjct: 582 RIVIDSMPSK-PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYAD 640
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
VGR+ D ++R++M ++ K P S +
Sbjct: 641 VGRWNDVAKVRKLMRDQAVRKEPACSWI 668
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 169/408 (41%), Gaps = 83/408 (20%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT- 80
+ ++ +N ++ Y+ A L++ +++ RP D FT++ ++ V
Sbjct: 109 MRDSVFYNAMITGYAHNGDGHSALELFRAMRR------DDFRP--DDFTFTSVLSALVLF 160
Query: 81 LSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYV----SLGF----LKDSSKLFDELPE 131
+ Q+H + K G V AL+++YV LG + + KLFDE+P+
Sbjct: 161 VGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPK 220
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----- 186
R+ +TW MITG V+ +L AR +FE M +W ++ GY A T
Sbjct: 221 RDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKM 280
Query: 187 -----EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN---AFDIRVSNCLIDTYAK 238
+ +IT ++ A G+ + + +H Y K N +F + VSN LI Y K
Sbjct: 281 RFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCK 340
Query: 239 CGCIFSALKLFEDISVER-----------------------------KNLVSWTSIISGF 269
+ A K+F + V KNL++ T +ISG
Sbjct: 341 NNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGL 400
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HGGL-HYG----- 312
A +G G ++ F++M+ G +P F L ACS H L H G
Sbjct: 401 AQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSL 460
Query: 313 ----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
++ M + G +E AE + + +PS D+V ++ A HG+
Sbjct: 461 SVGNAMISMYAKCGVVEAAESVFVTMPS--VDLVSWNSMIAALGQHGH 506
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 132/309 (42%), Gaps = 41/309 (13%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+L +HA + GF+ + L+ MY + + +LF+E+P + + +IT
Sbjct: 30 SLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAY 89
Query: 145 VKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGA----------STEPSEIT 192
G LE R +F P R+ V + ++ GY + A P + T
Sbjct: 90 CALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFT 149
Query: 193 ILAVLPA-IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK--------CGCIF 243
+VL A + G + C +H K G V N L+ Y K C +
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMV 209
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLN 302
SA KLF+++ +++ ++WT++I+G+ + A E FE M + +G + N
Sbjct: 210 SARKLFDEMP--KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG---------AAWN 258
Query: 303 ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
A G +H GC + L ++ LGI D + ++ AC+ G+ +MG++
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMR-----FLGIQ---FDDITYTTIISACANVGSFQMGKQ 310
Query: 363 VTRKVLEME 371
+ +L+ E
Sbjct: 311 MHAYILKNE 319
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 220/416 (52%), Gaps = 57/416 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT--LSY 83
++N + ++A + +LY Q+ I S + FTY+++++ CV LS
Sbjct: 141 FVWNAIFRALAMASRGEDLLVLYGQMNWIGIPS--------NRFTYTYVLKACVVSELSI 192
Query: 84 PNL--GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
L G ++HA I + G++ HV+V T L+++Y G++ +S +F +P++N+V+W+ MI
Sbjct: 193 CPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMI 252
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
K EMP + + + ++ T P+ IT+++VL A
Sbjct: 253 ACYAK-----------NEMPMKALELFQIMM--------LEACDTVPNPITMVSVLQACA 293
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A+ + +L+H Y +RG ++ + V N LI Y +CG I + ++F+ +++++++S
Sbjct: 294 SLAALEHGKLVHAYVLRRGLDS-TLPVLNTLITMYGRCGEISTGQRVFD--YMKKRDVIS 350
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W S+IS + MHG+GK A++ FE M G+ P+ +TF++VL ACSH GL
Sbjct: 351 WNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESML 410
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C+VD+LGRA RL++A ++ + + V LLG+C H NVE+
Sbjct: 411 NKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGS-LLGSCRIHCNVEL 469
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
ER + + E+E N G+YVL+ +I A + D R+R+ ++ R K P S +
Sbjct: 470 AERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWI 525
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 155/366 (42%), Gaps = 60/366 (16%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
KQ Q+ +P + T+ LI +C+ + + G +H + G Y+ T
Sbjct: 60 KQAVQLLCCEPNPTKK-----TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATK 114
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+NMY LG + + K+FDE E+ + WN + L E L+ +M +W
Sbjct: 115 LINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQM------NW 168
Query: 169 TGILDG---YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
GI YT + ++ S L++ P +R + IH + + G+
Sbjct: 169 IGIPSNRFTYTYVLKACVVSE-------LSICP-------LRKGKEIHAHILRHGYEG-H 213
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ V L+D YA+ G + A +F ++ KN+VSW+++I+ +A + M A+E F+ M
Sbjct: 214 VHVMTTLLDVYARFGYVSYASSVFG--AMPDKNIVSWSAMIACYAKNEMPMKALELFQIM 271
Query: 286 --QKVGLKPNRVTFLSVLNACS------HGGLHYG---------------CLVDMLGRAG 322
+ PN +T +SVL AC+ HG L + L+ M GR G
Sbjct: 272 MLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCG 331
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-ERGNGGDYVLM 381
+ +++ + DV+ L+ HG +G++ + M RG Y+
Sbjct: 332 EISTGQRVFDYMKKR--DVISWNSLISIYGMHG---LGKKAIQIFENMINRGVSPSYITF 386
Query: 382 YNILAG 387
+L
Sbjct: 387 ITVLCA 392
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/494 (27%), Positives = 230/494 (46%), Gaps = 116/494 (23%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N ++ YS + +P A +Y +++ + L D +TY F+ + C +
Sbjct: 70 FIYNAMIRAYSSSQTPCVAISIYNKMR-------ACQNILGDKYTYPFVFKACASQFAVE 122
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNM-------------------------------YV 114
G ++H VI ++G++ ++ ++L+N Y
Sbjct: 123 KGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYA 182
Query: 115 SLGFLKDSSKLFDELPERNLVTWN------------------------------------ 138
G + DS +F E+ E V N
Sbjct: 183 RQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREG 242
Query: 139 -----VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG---------- 183
+I VK G L+ AR LF+E+P +N V W ++ GY ++ N
Sbjct: 243 VKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHL 302
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
++ +P T+ VL A Q GA +H + EK+G +D+ + LID YAKCG I
Sbjct: 303 SNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI--WDVFIGTALIDMYAKCGFIG 360
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
+A K+F+ ++ +N+ +W +I+SG+A HG ++A+E F M++ G +P+ +TFL+VL+A
Sbjct: 361 AARKVFDQMN--ERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHA 418
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C+H GL HYGC+VD+LGRAG L++A ++ + E +V
Sbjct: 419 CAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVE-PNV 477
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
VV LL ACS HGN+E+GE ++++ +GG YV++ N+ A R+ + +R +M
Sbjct: 478 VVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMM 537
Query: 402 DERNALKFPGRSLV 415
E+ K G S++
Sbjct: 538 VEKGICKSHGCSMI 551
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 123/261 (47%), Gaps = 53/261 (20%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T+++N+L+ Y S + L +++ S L+P D FT S ++ C +
Sbjct: 273 NTVVWNSLICGYCQIGSLNEVIELLREMHL------SNLKP--DRFTVSGVLSACAQMGA 324
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
NLG +H K G V++ TAL++MY GF+ + K+FD++ ERN+ TWN +++G
Sbjct: 325 FNLGNWVHRFAEKKGIWD-VFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSG 383
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
G+ E A LF EM R +GA P IT LAVL A +
Sbjct: 384 YASHGQAESAIELFSEM-------------------RESGA--RPDSITFLAVLHACAHS 422
Query: 204 GAVRNCQLIHGYGEKRGFNAFDI---------RVSN--CLIDTYAKCGCIFSALKLFEDI 252
G V N G FD+ RV + C++D + G + A +L + +
Sbjct: 423 GLVEN-----------GKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMM 471
Query: 253 SVERKNLVSWTSIISGFAMHG 273
VE N+V W +++S ++HG
Sbjct: 472 VVE-PNVVVWGALLSACSIHG 491
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 41/266 (15%)
Query: 74 LIRTCVTLSYPNLGTQLHA--VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
LI TC + Q+HA +IS + + ++ T ++N ++S L ++++F++ E
Sbjct: 12 LIETCTNIQQLK---QIHAKSIISSLSYTQ--FIITKIINSFLSHACLDYATQVFNQTQE 66
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEM-PCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
+ +N MI A S++ +M C+N++ D YT P
Sbjct: 67 PDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILG-----DKYTY----------P-- 109
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
V A AV + +HG + G+ D + + L++ Y CG I +A ++F+
Sbjct: 110 ----FVFKACASQFAVEKGKEVHGVIVRIGYE-LDGFLQSSLLNFYMVCGEIGNAQQVFD 164
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHG-- 307
+ + K++V W ++I+G+A GM + F+ M +V ++PN T + ++ AC
Sbjct: 165 EF--DAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKN 222
Query: 308 -----GLHYGCLVDMLGRAG-RLEQA 327
+H + DM+ R G +LE A
Sbjct: 223 LKLGRAIHGYMMKDMVLREGVKLEAA 248
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 197/369 (53%), Gaps = 47/369 (12%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT+S +++ C LS LG Q++A++ K+ S V +L++MY G ++++ K FD
Sbjct: 251 FTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDV 310
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
L E+NLV++N ++ YA+SL E + + N GA T
Sbjct: 311 LFEKNLVSYNTIVNA--------YAKSLNSE-------------EAFELFNEIEGAGTGV 349
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ T ++L GA+ + IH K GF + ++ + N LI Y++CG I +A ++
Sbjct: 350 NAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKS-NLHICNALISMYSRCGNIEAAFQV 408
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F ++ N++SWTS+I+GFA HG A+E F +M + G+ PN VT+++VL+ACSH G
Sbjct: 409 FNEMG--DGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVG 466
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HY C+VD+LGR+G LE+A ++ +P + D +V R
Sbjct: 467 LISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFK-ADALVLRT 525
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LGAC HGN+++G+ +LE + + Y+L+ N+ A G++ + +R+ M ERN
Sbjct: 526 FLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNL 585
Query: 407 LKFPGRSLV 415
K G S +
Sbjct: 586 TKEAGCSWI 594
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 30/246 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVS-LGFLKDSSK 124
+ + ++ + R C +LG + + K G F+S V V AL++M+V G L+ + K
Sbjct: 41 NEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYK 100
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FD +P+RN+VTW +MIT + G A LF +M +L GY
Sbjct: 101 VFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDM----------VLSGYV-------- 142
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC---GC 241
P T+ V+ A + G + + H K G + D+ V L+D YAKC G
Sbjct: 143 ---PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLD-LDVCVGCSLVDMYAKCVADGS 198
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMH-GMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ A K+F+ + V N++SWT+II+G+ G + A+E F M + +KPN TF SV
Sbjct: 199 VDDARKVFDRMPVH--NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSV 256
Query: 301 LNACSH 306
L AC++
Sbjct: 257 LKACAN 262
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 123/263 (46%), Gaps = 47/263 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT+++ Y+ + + ++AF L+ +++ T ++FT++ L+ ++ G
Sbjct: 319 YNTIVNAYAKSLNSEEAFELFNEIEGAGTG--------VNAFTFASLLSGASSIGAIGKG 370
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I K GF+S++++ AL++MY G ++ + ++F+E+ + N+++W MITG K
Sbjct: 371 EQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKH 430
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G A F +M A P+E+T +AVL A G +
Sbjct: 431 GFATRALETFHKML---------------------EAGVSPNEVTYIAVLSACSHVGLIS 469
Query: 207 ------RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
++ ++ HG + A C++D + G + A++L + + LV
Sbjct: 470 EGLKHFKSMKVEHGIVPRMEHYA-------CVVDLLGRSGHLEEAMELVNSMPFKADALV 522
Query: 261 SWTSIISGFAMHG---MGKAAVE 280
T + +HG +GK A E
Sbjct: 523 LRT-FLGACRVHGNMDLGKHAAE 544
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 163 RNVVSWTGILDGYTRMNRSNGASTE----------PSEITILAVLPAIWQNGAVRNCQLI 212
R++VSW+ ++ Y ++ A + P+E V A + ++I
Sbjct: 5 RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKC-GCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
G+ K G+ D+ V LID + K G + SA K+F+ + +N+V+WT +I+ F
Sbjct: 65 FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP--DRNVVTWTLMITRFQQ 122
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-----HYGCLV 315
G + AV+ F M G P+R T V++AC+ GL + CLV
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLV 171
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+++LVSW+++IS +A + A+ F M + G PN F V ACS+
Sbjct: 4 KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSN 54
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 193/369 (52%), Gaps = 37/369 (10%)
Query: 77 TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVT 136
C + G Q+H++ K G Q + YV AL+ +Y + ++FD + ++ V+
Sbjct: 427 ACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS 486
Query: 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---------STE 187
+N ++ LV+ + AR +F MP +VVSWT I+ + ++ N A E
Sbjct: 487 YNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERE 546
Query: 188 PSEITILAVLPAIWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
IL +L + N GA + Q IH K G ++ + V+N L+ Y KC S L
Sbjct: 547 LPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDS-GLVVANALVSMYFKCSSADS-L 604
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K+F+ S+E +++ +W +II+G+A HG+G+ A+ ++ M G+ PN VTF+ +L+ACSH
Sbjct: 605 KVFD--SMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSH 662
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VD+LGRAG ++ AE +P E D V+
Sbjct: 663 SGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIE-PDSVIW 721
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLGAC H NVE+G R K+ +E N G+YV++ NI + G + + ++R++M ER
Sbjct: 722 SALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKER 781
Query: 405 NALKFPGRS 413
K PG S
Sbjct: 782 GVNKDPGCS 790
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 16/220 (7%)
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
V +G ++ V N A+V YV G + + KLFD +P R++ +WN M+TG +E
Sbjct: 117 VFDGMGVRNTVAWN-AMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEE 175
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQ 202
AR+LFE MP RN VSWT ++ GY + + A P + +++VL A+
Sbjct: 176 ARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRH 235
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK-CGCIFSALKLFEDISVERKNLVS 261
G + IH K GF D+ V +++ Y K + SA+K FE ++ +N +
Sbjct: 236 LGKPGILESIHVLVHKTGFER-DVVVGTAILNGYTKDVNMLDSAVKFFEGMAA--RNEYT 292
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
W++II+ + G A ++R + P+R + L+ L
Sbjct: 293 WSTIIAALSQAGRIDDAFAVYQR-DPLKSVPSRTSMLTGL 331
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 43/262 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ +T+S +I LS AV + +S V T+++ G + D+ LF
Sbjct: 289 NEYTWSTII---AALSQAGRIDDAFAVYQRDPLKS-VPSRTSMLTGLARYGRIDDAKILF 344
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D++ E N+V+WN MITG ++ ++ A LF MP RN +SW G++ GY R RS A
Sbjct: 345 DQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQA-- 402
Query: 187 EPSEITILAVLPAIWQNG-------------------AVRNCQLIHGYGEKRG--FNAFD 225
L L A+ + G A+ + +H K G FN++
Sbjct: 403 -------LVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSY- 454
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
V N LI Y K I S ++F+ ++V K+ VS+ S +S + + A + F M
Sbjct: 455 --VCNALITLYGKYRSIGSVRQIFDRMTV--KDTVSYNSFMSALVQNNLFDEARDVFNNM 510
Query: 286 QKVGLKPNRVTFLSVLNACSHG 307
P+ V++ ++++AC+
Sbjct: 511 P----SPDVVSWTTIISACAQA 528
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 33/227 (14%)
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV-SLGFLKDSSKLFDELPERNLVTWNV 139
L P + +H ++ K GF+ V V TA++N Y + L + K F+ + RN TW+
Sbjct: 236 LGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWST 295
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
+I L + G ++ A ++++ P ++V S T +L G R R + A +
Sbjct: 296 IIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKI---------LFDQ 346
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
I + V +I GY + N ++D A LF + +N
Sbjct: 347 IHEPNVVSWNAMITGY------------MQNEMVD---------EAEDLFNRMPF--RNT 383
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+SW +I+G+A +G + A+ + + + + G+ P+ + S ACS+
Sbjct: 384 ISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSN 430
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 118/285 (41%), Gaps = 27/285 (9%)
Query: 116 LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
LG L ++ ++FD +P R+++ WN MI G + RSL + + N+ + T +L GY
Sbjct: 46 LGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGY 105
Query: 176 TRMNRSNGAST------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
R R A + + A++ QNG + + + R D+
Sbjct: 106 ARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSR-----DVSSW 160
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N ++ Y + A LFE + +N VSWT +ISG+ + A + F M G
Sbjct: 161 NTMLTGYCHSQLMEEARNLFE--RMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEG 218
Query: 290 LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
+ P + +SVL+A H LG+ G LE + E DVVV +L
Sbjct: 219 MTPEQPNLVSVLSAVRH-----------LGKPGILESIHVLVHKTGFE-RDVVVGTAILN 266
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
+ +V M + + M N + + L+ GR DA
Sbjct: 267 G--YTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDA 309
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 198/385 (51%), Gaps = 45/385 (11%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D F + LI C + LG QLH++ K G V V+ +L++MY L+ + +
Sbjct: 389 LDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAI 448
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
F + E+++V+W MIT + G + AR F+ M +NV++W +L Y + +GA
Sbjct: 449 FRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQ----HGAE 504
Query: 186 TE---------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
+ P +T + + GA + I G K G D V+N
Sbjct: 505 EDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGL-IIDTSVAN 563
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
+I Y+KCG I A K+F+ ++V K++VSW ++I+G++ HGMGK A+E F+ + K G
Sbjct: 564 AVITMYSKCGRILEARKVFDFLNV--KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGA 621
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ +++++VL+ CSH GL H+ C+VD+LGRAG L +A+
Sbjct: 622 KPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAK 681
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + T V LL AC HGN E+ E + V E++ + G Y+LM I A
Sbjct: 682 DLIDDMPMKPT-AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADA 740
Query: 389 GRYVDAERLRRVMDERNALKFPGRS 413
G+ D+ ++R++M ++ K PG S
Sbjct: 741 GKSDDSAQIRKLMRDKGIKKNPGYS 765
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 168/377 (44%), Gaps = 61/377 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
++FT + +++C L + +L QL A++ K Q V ALV+M+V G + +S+LF
Sbjct: 157 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 216
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------ 180
+ E + N M+ G VK +++A LF+ MP R+VVSW ++ ++ R
Sbjct: 217 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 276
Query: 181 ------SNG----ASTEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
S G ++T S +T A L ++ W G + Q+I R D V+
Sbjct: 277 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRW--GKQLHAQVI------RNLPHIDPYVA 328
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
+ L++ YAK GC A +F S+ +N V+WT +ISGF +G +VE F +M+
Sbjct: 329 SALVELYAKSGCFKEAKGVFN--SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 386
Query: 290 LKPNRVTFLSVLNACSH-------GGLHYGC--------------LVDMLGRAGRLEQAE 328
+ ++ ++++ C LH C L+ M + L+ AE
Sbjct: 387 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 446
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
I + + D+V ++ A S GNV K E G V+ +N + G
Sbjct: 447 AIFRFMNEK--DIVSWTSMITAYSQVGNVA-------KAREFFDGMSEKNVITWNAMLGA 497
Query: 389 ----GRYVDAERLRRVM 401
G D R+ +VM
Sbjct: 498 YIQHGAEEDGLRMYKVM 514
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 50/281 (17%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DE 128
++ +R+C LH + VG S V++ L++ Y+S G L D+ +L +
Sbjct: 26 AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY-----------TR 177
+ N++T NVM+ G K G L A LF MP R+V SW ++ GY T
Sbjct: 86 IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145
Query: 178 MNRSNGASTEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
++ + P+ T+ + + W + A++ ++ + + D V+ L+
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQD-----DSEVAAALV 200
Query: 234 DTYAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTS 264
D + +CG + A +LF I S+ +++VSW
Sbjct: 201 DMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNM 260
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++S + G + A++ MQ G++ + T+ S L AC+
Sbjct: 261 MVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 301
>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
[Vitis vinifera]
gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 192/371 (51%), Gaps = 47/371 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+F +S ++ L +G Q+H + K G V + +LV+MY+ G L++ K F
Sbjct: 248 DNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAF 307
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+E+ ER++ TWN M G + G+ A L EEM V RMN+
Sbjct: 308 EEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGV-----------RMNK------ 350
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
T+ L A ++ + HG K G N D+ V N L+D YAKCG + AL
Sbjct: 351 ----FTLATALTACANLASLEEGKKAHGLRIKLG-NDVDVCVDNALLDMYAKCGSMGDAL 405
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K+F +VE +++VSWT++I GFA +G + A+E FE+M+ G PN +TF+ VL ACS
Sbjct: 406 KVFG--TVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQ 463
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GGL HY C+VDMLGRAG +++A ++ +P + + V+V
Sbjct: 464 GGLINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQAS-VLVW 522
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
+ LLGAC HG+VE G ++ L +++ + YV++ N+ A + LR +M+ R
Sbjct: 523 QTLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRELMETR 582
Query: 405 NALKFPGRSLV 415
+ K PG S +
Sbjct: 583 DVKKMPGSSWI 593
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 122/298 (40%), Gaps = 61/298 (20%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D Y+ L+R G LHA + K + +++N ++NMY G L + KLF
Sbjct: 34 DEDLYATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLF 93
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D P RN V+W+V+I G V+ A LF +M + A
Sbjct: 94 DHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQM---------------------HAAGV 132
Query: 187 EPSEITILAVLPA--IWQNGAVRN-----------CQLIHGYGEKRGFNAFDIRVSNCLI 233
+E T+++ L A ++ N + N ++ + + GF +++ + N +
Sbjct: 133 NINEFTLVSALHACSLYDNDSDNNEGYYYSYYLSRLYQVYAFVVRLGFE-WNVFLMNVFM 191
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF-ERMQKVGLKP 292
+ + AL++FE + K++VSW ++++G G+ V F RM G+KP
Sbjct: 192 TALIRSRKLAEALEVFE--ACRGKDVVSWNAVMAGLVQFCCGE--VPGFWRRMCCEGVKP 247
Query: 293 NRVTFLSVLNA-------------------CSHGG--LHYGCLVDMLGRAGRLEQAEK 329
+ F VL+ C HGG LVDM + G LE K
Sbjct: 248 DNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIK 305
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 198/385 (51%), Gaps = 45/385 (11%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D F + LI C + LG QLH++ K G V V+ +L++MY L+ + +
Sbjct: 369 LDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAI 428
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
F + E+++V+W MIT + G + AR F+ M +NV++W +L Y + +GA
Sbjct: 429 FRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQ----HGAE 484
Query: 186 TE---------------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
+ P +T + + GA + I G K G D V+N
Sbjct: 485 EDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGL-IIDTSVAN 543
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
+I Y+KCG I A K+F+ ++V K++VSW ++I+G++ HGMGK A+E F+ + K G
Sbjct: 544 AVITMYSKCGRILEARKVFDFLNV--KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGA 601
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ +++++VL+ CSH GL H+ C+VD+LGRAG L +A+
Sbjct: 602 KPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAK 661
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + T V LL AC HGN E+ E + V E++ + G Y+LM I A
Sbjct: 662 DLIDDMPMKPT-AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADA 720
Query: 389 GRYVDAERLRRVMDERNALKFPGRS 413
G+ D+ ++R++M ++ K PG S
Sbjct: 721 GKSDDSAQIRKLMRDKGIKKNPGYS 745
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 168/377 (44%), Gaps = 61/377 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
++FT + +++C L + +L QL A++ K Q V ALV+M+V G + +S+LF
Sbjct: 137 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 196
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR------ 180
+ E + N M+ G VK +++A LF+ MP R+VVSW ++ ++ R
Sbjct: 197 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256
Query: 181 ------SNG----ASTEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
S G ++T S +T A L ++ W G + Q+I R D V+
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRW--GKQLHAQVI------RNLPHIDPYVA 308
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
+ L++ YAK GC A +F S+ +N V+WT +ISGF +G +VE F +M+
Sbjct: 309 SALVELYAKSGCFKEAKGVFN--SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 366
Query: 290 LKPNRVTFLSVLNACSH-------GGLHYGC--------------LVDMLGRAGRLEQAE 328
+ ++ ++++ C LH C L+ M + L+ AE
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
I + + D+V ++ A S GNV K E G V+ +N + G
Sbjct: 427 AIFRFMNEK--DIVSWTSMITAYSQVGNVA-------KAREFFDGMSEKNVITWNAMLGA 477
Query: 389 ----GRYVDAERLRRVM 401
G D R+ +VM
Sbjct: 478 YIQHGAEEDGLRMYKVM 494
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 50/281 (17%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DE 128
++ +R+C LH + VG S V++ L++ Y+S G L D+ +L +
Sbjct: 6 AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY-----------TR 177
+ N++T NVM+ G K G L A LF MP R+V SW ++ GY T
Sbjct: 66 IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125
Query: 178 MNRSNGASTEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
++ + P+ T+ + + W + A++ ++ + + D V+ L+
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQD-----DSEVAAALV 180
Query: 234 DTYAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTS 264
D + +CG + A +LF I S+ +++VSW
Sbjct: 181 DMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNM 240
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++S + G + A++ MQ G++ + T+ S L AC+
Sbjct: 241 MVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 281
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 186/340 (54%), Gaps = 35/340 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A+++ Y ++++ LF ++P R++ +WN+MITG ++ +L+ AR LF+EMP RNV++
Sbjct: 233 AMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVIT 292
Query: 168 WTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
WT +++GY + +S A +P+++T L L A A+ Q +H
Sbjct: 293 WTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMIC 352
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
K + FD V + L++ YAKCG I A +F D S+E K+L+SW II+ +A HG G
Sbjct: 353 KTP-SQFDTFVESTLMNLYAKCGEIRLARNVF-DFSME-KDLISWNGIIAAYAHHGFGIE 409
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
A+ ++ MQ+ G KPN T++ +L+ACSH GL HY CLV
Sbjct: 410 AMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLV 469
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
D+ RAGRLE A+++ + T V LLG C+ HGN +G+ + +LE E N
Sbjct: 470 DLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNA 529
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G Y L+ NI A G++ +A +R M+ R K PG S +
Sbjct: 530 GTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWI 569
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 117/208 (56%), Gaps = 21/208 (10%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
++ Y ++G ++D+S LF+ +P R+ +WN+++ GLV+ G LE AR +FE MP R+V+SW
Sbjct: 141 MLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSW 200
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE----KRGFNAF 224
T ++ G R NG+ + + A+ + V +I GY + + F
Sbjct: 201 TTMISGLAR----NGSVDDA-----WVLFDAMPERNVVSWNAMISGYARNHRIEEALDLF 251
Query: 225 ------DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
D+ N +I + + + SA +LF+++ ++N+++WT++++G+ + A
Sbjct: 252 TKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMP--KRNVITWTTMMNGYLQCMQSEMA 309
Query: 279 VENFERMQKVGLKPNRVTFLSVLNACSH 306
++ F M G++PN+VTFL L+ACS+
Sbjct: 310 LKLFNCMLVQGIQPNQVTFLGSLDACSN 337
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 40/258 (15%)
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
+HV + V + G + D+ +LFD +P+R++V+W M+ + G L+ AR LF+
Sbjct: 39 NHVQDSNWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRP 98
Query: 161 PC-RNVVSWTGILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIH 213
RNVV+WT +L GY R R + A E + ++ +L A G V + +
Sbjct: 99 DARRNVVTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASAL- 157
Query: 214 GYGEKRGFNAFDIRVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
FN +R + N L+ + G + A K+FE + V ++++SWT++ISG A
Sbjct: 158 -------FNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPV--RDVMSWTTMISGLA 208
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
+G A F+ M P R N S + ++ R R+E+A +
Sbjct: 209 RNGSVDDAWVLFDAM------PER-------NVVS-----WNAMISGYARNHRIEEALDL 250
Query: 331 ALGIPSEITDVVVRRILL 348
+P I DV I++
Sbjct: 251 FTKMP--IRDVASWNIMI 266
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ T+ + C L+ G Q+H +I K Q +V + L+N+Y G ++ + +F
Sbjct: 324 NQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVF 383
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D E++L++WN +I G A L++ M + NG
Sbjct: 384 DFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNM-------------------QENG--Y 422
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKCGCIFS 244
+P++ T + +L A G V I K N+ +R + CL+D ++ G +
Sbjct: 423 KPNDATYVGLLSACSHAGLVDEGLKIFESMVKD--NSIVVRDEHYTCLVDLCSRAGRLED 480
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHG 273
A +L ++ + W++++ G HG
Sbjct: 481 AKRLISWFKIKPTSSTVWSALLGGCNSHG 509
>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Glycine max]
Length = 506
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 195/391 (49%), Gaps = 44/391 (11%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
S +RP + FT+ LI + L +G QLHA K+G HV+V ++L+++Y +
Sbjct: 75 SKIRP--NEFTFGTLINSSAALGNVVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTI 132
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+D+ K F + N+V++ +I G +K G E A +F EMP RNVVSW ++ G ++
Sbjct: 133 EDAQKAFGDTQHPNVVSYTTLICGYLKRGRFEDALRVFHEMPERNVVSWNAMVGGCSQ-- 190
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQL-----IHGYGEKRGFNAFDIR------- 227
G + E I + N + C + I G + F+A I+
Sbjct: 191 --TGHNEEAVNFFIGMLREGFIPNESTFPCVICAAANIASLGIGKSFHACAIKFLGKVDQ 248
Query: 228 -VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
V N LI YAKCG + +L +F+ + ++N+VSW ++I G+A +G G A+ FERM
Sbjct: 249 FVGNSLISFYAKCGSMEDSLLMFDKLF--KRNIVSWNAMICGYAQNGRGAEAISFFERMC 306
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
G KPN VT L +L AC+H GL HY C+V++L R+GR
Sbjct: 307 SEGYKPNYVTLLGLLWACNHAGLVDEGYSYFNRARLESPGLLKSEHYACMVNLLARSGRF 366
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+AE +P + + + LL C H N+ +GE RK+L+++ + YV++ N
Sbjct: 367 AEAEDFLQSVPFD-PGLGFWKALLAGCQIHSNMRLGELAARKILDLDPDDVSSYVMLSNA 425
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ G++ D +R M E+ + PG S +
Sbjct: 426 HSAAGKWSDVATVRTEMKEKGMKRIPGSSWI 456
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 212/408 (51%), Gaps = 55/408 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ A S A +Y+++ + + SP RP +SFT +F ++ C + P G
Sbjct: 94 YNSLIRALPAAGS-APALAVYRRMLR----AGSP-RP--NSFTLAFALKACAAVPAPGEG 145
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVK 146
QLHA + G + YV T L+N+Y + + +FD + ++NLV W+ M++G +
Sbjct: 146 RQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSR 205
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G + A LF EM EP E+T+++V+ A + GA+
Sbjct: 206 VGMVNEALGLFREM---------------------QAVGVEPDEVTMVSVISACAKAGAL 244
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ +H Y +++G D+ +S LID YAKCG I A +F D VE K+ +W+++I
Sbjct: 245 DLGKWVHAYIDRKGIT-VDLELSTALIDMYAKCGLIERARGVF-DAMVE-KDTKAWSAMI 301
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
GFA+HG+ + A+ F RM ++ ++PN VTF+ VL+AC+H GL
Sbjct: 302 VGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIK 361
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
+YGC+VD+L R+G L+ A +G+P + V+ R LL AC +++ E T+
Sbjct: 362 PSMENYGCMVDLLCRSGLLDDAYSFVIGMPVS-PNSVIWRTLLVACKSSNRIDIAESATK 420
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
++LE+E N +YVL+ N+ A ++ LRR M +N GRS
Sbjct: 421 RLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRS 468
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 197/386 (51%), Gaps = 38/386 (9%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP + F Y ++R + + +H+ K GF H + T++++ Y G + D+
Sbjct: 115 RPAPNQFVYPLVLRAASGVGV-GIVKSIHSHACKSGFCGHDIIRTSVLDGYSRHGMMADA 173
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----- 177
KLFD L ERN+V+W +++G + G++ A LFE MP R+V +W I+ G ++
Sbjct: 174 RKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFV 233
Query: 178 -----MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
R GA P+ T+ VL A G ++ +LIH Y R F V N L
Sbjct: 234 EAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYA-WRTCVGFGSSVLNGL 292
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
ID Y KCG + A +F+++S ++L +W S+I+ A+HG K A+ F M+ G++P
Sbjct: 293 IDMYGKCGNLEGARWIFDEVS--DRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEP 350
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
+ VTF+ +LNAC+HGG HYGC++D+LGRAGR + A +
Sbjct: 351 DVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAGRFQDALNV 410
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+ E D V+ LL AC H VE E RK+LE++ N V++ N+ + G
Sbjct: 411 ISDMRIE-ADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVMLANVYSEGGL 469
Query: 391 YVDAERLRRVMDERN-ALKFPGRSLV 415
+ + ++R+ + E N K PG S +
Sbjct: 470 WEEVRKVRKFVKEENIGKKLPGCSWI 495
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 135/357 (37%), Gaps = 119/357 (33%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDG------------------------YTRMNRSNGAS 185
L YAR LF+ P +V ++ IL + RM R
Sbjct: 58 LTYARHLFDATPHPSVFLYSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRH--GR 115
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P++ VL A G V + IH + K GF DI + ++D Y++ G + A
Sbjct: 116 PAPNQFVYPLVLRAASGVG-VGIVKSIHSHACKSGFCGHDI-IRTSVLDGYSRHGMMADA 173
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK------------------ 287
KLF+ ++ +N+VSWT+++SG+A G A+ FERM +
Sbjct: 174 RKLFDGLT--ERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGL 231
Query: 288 -------------VGLKPNRVTFLSVLNACSHGGL----------------HYGC----- 313
G +PN T VL+AC H G+ +G
Sbjct: 232 FVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNG 291
Query: 314 LVDMLGRAGRLEQAE---------------------------KIALGIPSEI------TD 340
L+DM G+ G LE A K A+ + +E+ D
Sbjct: 292 LIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEPD 351
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD---YVLMYNILAGVGRYVDA 394
VV LL AC+ G V+ G R ++++ E G + Y + ++L GR+ DA
Sbjct: 352 VVTFVGLLNACTHGGFVDEGIRYF-ELMQHEHGIEPEIEHYGCIIDLLGRAGRFQDA 407
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 188/371 (50%), Gaps = 47/371 (12%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
L D FT ++R C L G Q+HA + K G++ ++ V ++L +MY+ G L + K
Sbjct: 86 LPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEK 145
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+ + RN+V WN +I G + G E G+LD Y M S
Sbjct: 146 VIKAMRIRNVVAWNTLIAGNAQNGHFE------------------GVLDLYNMMKMS--- 184
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P +IT+++V+ + + + Q IH K G N+ + V + LI Y+KCGC+
Sbjct: 185 GLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANS-AVAVLSSLISMYSKCGCLED 243
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
++K D E + V W+S+I+ + HG G+ AV FE+M++ GL N VTFLS+L AC
Sbjct: 244 SMKALLD--CEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYAC 301
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
SH GL HY C+VD+LGR+G L++AE + +P E DVV
Sbjct: 302 SHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLE-ADVV 360
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
+ + LL AC H N +M R ++L + + YVL+ NI A R+ D ++R M
Sbjct: 361 IWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMR 420
Query: 403 ERNALKFPGRS 413
+RN K PG S
Sbjct: 421 DRNVKKEPGVS 431
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 148/306 (48%), Gaps = 40/306 (13%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY +G ++++ F+ +P RN+++ N++I G V+ G+L+ A +F+EM RNV +W +
Sbjct: 1 MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60
Query: 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV-RNC---------QLIHGYGEKRGF 221
+ G + + E+ L LP + G+V R C + +H Y K G+
Sbjct: 61 VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
F++ V + L Y K G + K+ + + + +N+V+W ++I+G A +G + ++
Sbjct: 121 E-FNLVVGSSLAHMYMKSGSLGEGEKVIKAMRI--RNVVAWNTLIAGNAQNGHFEGVLDL 177
Query: 282 FERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGR 320
+ M+ GL+P+++T +SV+++ + L G L+ M +
Sbjct: 178 YNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSK 237
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER-GNGGDYV 379
G LE + K L E D V+ ++ A FHG GE +ME+ G GG+ V
Sbjct: 238 CGCLEDSMKALL--DCEHPDSVLWSSMIAAYGFHGR---GEEAVHLFEQMEQEGLGGNDV 292
Query: 380 LMYNIL 385
++L
Sbjct: 293 TFLSLL 298
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 216/423 (51%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ K+A L++++ ++ +RP D TY ++ C LG
Sbjct: 164 WNAMISGYAETGCYKEALELFEEMMKM------NVRP--DESTYVTVLSACAHSGSIELG 215
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ + GF S++ + AL+++Y K
Sbjct: 216 RQVHSWVDDHGFDSNLKIVNALIDLYS-------------------------------KC 244
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GE+E A LF+ + ++V+SW ++ GYT MN A P+++T+L+VL
Sbjct: 245 GEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVL 304
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y +KR NA +R S LID YAKCG I +A ++F S+
Sbjct: 305 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAKCGDIEAAHQVFN--SM 360
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L SW ++I GFAMHG A+ + F RM+K+G++P+ +TF+ +L+ACSH G+
Sbjct: 361 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR 420
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G ++AE++ + E D V+ LL AC
Sbjct: 421 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIWCSLLKACK 479
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNVE+ E + ++++E N Y+L+ NI A GR+ D R+R +++ + K PG
Sbjct: 480 MHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGC 539
Query: 413 SLV 415
S +
Sbjct: 540 SSI 542
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/449 (27%), Positives = 214/449 (47%), Gaps = 87/449 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT++ ++L+ P + LY + L L +S+T+ FL+++C
Sbjct: 30 LIWNTMIRGHALSSDPVSSLTLYVCMVS--------LGLLPNSYTFPFLLKSCAKSKTFT 81
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+GF +YV+T+L++MYV L+D+ K+FD R++V++ +ITG
Sbjct: 82 EGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYA 141
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G++ A+ LF+E+P ++VVSW ++ GY A + P E T +
Sbjct: 142 SRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVT 201
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A +G++ + +H + + GF++ ++++ N LID Y+KCG + +A LF+ +S
Sbjct: 202 VLSACAHSGSIELGRQVHSWVDDHGFDS-NLKIVNALIDLYSKCGEVETACGLFQGLSY- 259
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K+++SW ++I G+ + K A+ F+ M + G PN VT LSVL AC+H G + G
Sbjct: 260 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRW 318
Query: 313 --------------------CLVDMLGRAGRLEQAEKI---------------------- 330
L+DM + G +E A ++
Sbjct: 319 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMH 378
Query: 331 --------------ALGI-PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
+GI P +IT V LL ACS G +++G + R + + +
Sbjct: 379 GRADASFDLFSRMRKIGIEPDDITFVG----LLSACSHSGMLDLGRHIFRSMTQDYKMTP 434
Query: 376 G--DYVLMYNILAGVGRYVDAERLRRVMD 402
Y M ++L G + +AE + M+
Sbjct: 435 KLEHYGCMIDLLGHSGLFKEAEEMINTME 463
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 97/254 (38%), Gaps = 89/254 (35%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE----------PSEITILAVLPA 199
L YA S+FE + N + W ++ G+ + + T P+ T +L +
Sbjct: 14 LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73
Query: 200 IWQNGAVRNCQLIHGYGEKRGFN---------------------AF---------DIRVS 229
++ Q IHG K GF+ A+ D+
Sbjct: 74 CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
LI YA G I SA KLF++I V K++VSW ++ISG+A G K A+E FE M K+
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPV--KDVVSWNAMISGYAETGCYKEALELFEEMMKMN 191
Query: 290 LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
++P+ T+++V L
Sbjct: 192 VRPDESTYVTV-----------------------------------------------LS 204
Query: 350 ACSFHGNVEMGERV 363
AC+ G++E+G +V
Sbjct: 205 ACAHSGSIELGRQV 218
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 208/420 (49%), Gaps = 69/420 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ ++ + P AF Y+ + Q S S D+ T SF ++ C +
Sbjct: 71 WNAIIRGFAGSSHPSLAFSWYRSMLQ---RSSSSALCRVDALTCSFTLKACARALCSSAM 127
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H IS+ GF + + T L++ Y K
Sbjct: 128 VQIHCQISRRGFSADALLCTTLLDAYS-------------------------------KN 156
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G+L A LF+EM R+V SW ++ G NR++ A SE+T++A L
Sbjct: 157 GDLISALKLFDEMSVRDVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAAL 216
Query: 198 PAIWQNGAVRNCQ-LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
A G V+ + ++HGY + + ++ VSN +ID Y+KCG + A ++FE + +
Sbjct: 217 GACSHLGDVKEGEKILHGYIKDEKLD-HNVIVSNAVIDMYSKCGFVDKAFQVFEQFT-GK 274
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K++V+W ++I+GF++HG A+E FE+++ G+KP+ V++L+ L AC H GL
Sbjct: 275 KSVVTWNTMITGFSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGISI 334
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+L RAGRL +A I + S + D V+ + LLGA H
Sbjct: 335 FNNMACNGVEPNMKHYGCVVDLLSRAGRLREAHDIICSM-SMVPDPVLWQSLLGASEIHN 393
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NVEM E +RK+ EM N GD+VL+ N+ A GR+ D +R M+ + K PG S +
Sbjct: 394 NVEMAEIASRKIKEMGVNNDGDFVLLSNVYAAQGRWKDVGLVRDDMESKQVKKVPGISYI 453
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 152/343 (44%), Gaps = 50/343 (14%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVS-LGFLKDSSKLFDELPE 131
+I+ CVT S QL + G FQS + L +S G L + K+F +P+
Sbjct: 9 MIQNCVTFSQIK---QLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVKIFRHIPK 65
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
WN +I G A S + M R+ S +D T
Sbjct: 66 PLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSSSALCRVDALT------------CSF 113
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+ A A+ + V+ IH +RGF+A D + L+D Y+K G + SALKLF++
Sbjct: 114 TLKACARALCSSAMVQ----IHCQISRRGFSA-DALLCTTLLDAYSKNGDLISALKLFDE 168
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311
+SV +++ SW ++I+G A+E ++RM+ G++ + VT ++ L ACSH
Sbjct: 169 MSV--RDVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAALGACSH----- 221
Query: 312 GCLVDMLGRAGRLEQAEKIALG-IPSEITD--VVVRRILLGACSFHGNVEMGERVTRKVL 368
G +++ EKI G I E D V+V ++ S G V+ +V
Sbjct: 222 ---------LGDVKEGEKILHGYIKDEKLDHNVIVSNAVIDMYSKCGFVDKAFQV----- 267
Query: 369 EMERGNGGDYVLMYN-ILAGVGRYVDAERLRRVMD--ERNALK 408
E+ G V+ +N ++ G + +A R + + E N +K
Sbjct: 268 -FEQFTGKKSVVTWNTMITGFSVHGEAHRALEIFEKLEHNGIK 309
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 188/343 (54%), Gaps = 41/343 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+L++ YV G ++D+ LF +P R++VTW MI G K G + A++LF++MP R+VV+
Sbjct: 232 SLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVA 291
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + N+ N + E P E T++ VL AI Q G + +H Y
Sbjct: 292 YNSMMAGYVQ-NKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 350
Query: 216 -GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
EK+ F + V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+
Sbjct: 351 IVEKQFFLGGKLGVA--LIDMYSKCGSIQQAMLVFERI--ENKSIDHWNAMIGGLAIHGL 406
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G++A + +++ +KP+ +TF+ +LNACSH GL HYG
Sbjct: 407 GESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 466
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+VD+L R+G +E A+ + +P E D V+ R L ACS H E GE V + ++
Sbjct: 467 CMVDILSRSGSIELAKNLIEEMPMEPND-VIWRTFLTACSHHKEFETGEVVAKHLILQAG 525
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G + DA R+R +M ER K PG S +
Sbjct: 526 YNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWI 568
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 177/383 (46%), Gaps = 55/383 (14%)
Query: 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF------------DSFTYSFLIRTCVT 80
H S A + L+ + + ++H P R L D F+ S +++ C
Sbjct: 49 HSCSFAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSR 108
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L + G Q+H + K G S +++ L+ +Y+ G L + ++FD +P+R+ V++N M
Sbjct: 109 LGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSM 168
Query: 141 ITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRS-NGAST------EPSEI 191
I G VK G + AR LF+ MP +N++SW ++ GY + + N AS E I
Sbjct: 169 IDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLI 228
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+ +++ ++G + + + + +R D+ +ID YAK G + A LF+
Sbjct: 229 SWNSLIDGYVKHGRMEDAKDLFYVMPRR-----DVVTWATMIDGYAKLGFVHKAKTLFDQ 283
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSH---- 306
+ +++V++ S+++G+ + A+E F M+K L P+ T + VL+A +
Sbjct: 284 MP--HRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRL 341
Query: 307 -----------------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
GG L+DM + G ++QA + I ++ D ++G
Sbjct: 342 SKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSID--HWNAMIG 399
Query: 350 ACSFHGNVEMGERVTRKVLEMER 372
+ HG +GE +LE+ER
Sbjct: 400 GLAIHG---LGESAFDMLLEIER 419
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 29/245 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ Y +A ++ +++ S L P D T ++ L +
Sbjct: 292 YNSMMAGYVQNKYNMEALEIFSDMEK-----ESHLSP--DETTLVIVLSAIAQLGRLSKA 344
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I + F + AL++MY G ++ + +F+ + +++ WN MI GL
Sbjct: 345 MDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIH 404
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A + E+ R S +P +IT + +L A +G V+
Sbjct: 405 GLGESAFDMLLEIERR---------------------SIKPDDITFVGILNACSHSGLVK 443
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
L ++ ++ C++D ++ G I A L E++ +E N V W + ++
Sbjct: 444 EGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPME-PNDVIWRTFLT 502
Query: 268 GFAMH 272
+ H
Sbjct: 503 ACSHH 507
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 192/346 (55%), Gaps = 43/346 (12%)
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
+V ++V + G L + K+FDE+P RNLV+WN M+ G +++ AR LF+ MP
Sbjct: 87 NVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP 146
Query: 162 CRNVVSWTGILDGYTRMNR-----------SNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
++VVSWT ++ GY + R ++ +P+E+T+++VL A A+ +
Sbjct: 147 EKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGR 206
Query: 211 LIHGYGEKRGF---NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+H + +K N +++ + LID YAKCG A+K+F S++RKN+ +W ++I+
Sbjct: 207 WVHAFIDKHKMVLNNEYNLGAA--LIDMYAKCGRTDIAVKIFN--SLDRKNVSAWNALIT 262
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
AM+G + +V+ FE+M++ G KPN +TF+ VL ACSHGGL
Sbjct: 263 RLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQ 322
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VDMLGRAG LE+AE++ +P DV+V LLGAC H ++ ERV
Sbjct: 323 PEVKHYGCMVDMLGRAGLLEEAEELIRSMPM-APDVMVFGALLGACRMHKRFDVAERVQS 381
Query: 366 KV--LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
++ L + G +VL+ +I A G++ D R+V+ K+
Sbjct: 382 EIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKW 427
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 43/232 (18%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
++V+WN +I G VK GE+E A+ +F+EMP RN VSW+ ++ GY + A
Sbjct: 23 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAR------E 76
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIR--VS-NCLIDTYAKCGCI 242
+ +PAI +N N ++ G+ ++ F+ +R VS N ++ Y+ +
Sbjct: 77 MFDRMPAIGRNVVTWN-SMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDM 135
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGLKPNRVTFLSVL 301
A +LF D+ E K++VSWT +ISG+A G + +E F MQ + ++PN VT +SVL
Sbjct: 136 DGARELF-DVMPE-KDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVL 193
Query: 302 NACSH-GGLHYG----------------------CLVDMLGRAGRLEQAEKI 330
+AC++ L G L+DM + GR + A KI
Sbjct: 194 SACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKI 245
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 36/230 (15%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ ++ Y+ A + L++ +Q + S ++P + T ++ C L+ G
Sbjct: 153 WTCMISGYAQAGRYQDTLELFRAMQ-----TESNVQP--NEVTMVSVLSACANLTALEEG 205
Query: 88 TQLHAVISK--VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+HA I K + + + AL++MY G + K+F+ L +N+ WN +IT L
Sbjct: 206 RWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLA 265
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G + +D + +M R+ +P++IT + VL A G
Sbjct: 266 MNGNARDS------------------VDAFEQMKRT---GEKPNDITFVGVLTACSHGGL 304
Query: 206 V---RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
V R C G +++ C++D + G + A +L +
Sbjct: 305 VDEGRRC--FQSMASTCGVQP-EVKHYGCMVDMLGRAGLLEEAEELIRSM 351
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 218/413 (52%), Gaps = 55/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ L+N ++ ++ + LY ++ + L+P D F + F +++C LS
Sbjct: 783 SFLWNVMIRGFATDGRFLSSLELYSKMME------KGLKP--DKFAFPFALKSCAGLSDL 834
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G +H + G + ++V+ ALV+MY G ++ + +FD++ R+LV+W MI+G
Sbjct: 835 QRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISG- 893
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
YA + + G+ + RS+G P+ ++IL+VL A G
Sbjct: 894 -------YAHNGYNSETL-----------GFFDLMRSSGVI--PNRVSILSVLLACGNLG 933
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+R + H Y + GF FDI V+ ++D Y+KCG + A LF++ + K+LV W++
Sbjct: 934 ALRKGEWFHSYVIQTGFE-FDILVATAIMDMYSKCGSLDLARCLFDETA--GKDLVCWSA 990
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I+ + +HG G+ A++ F++M K G++P+ VTF VL+ACSH GL
Sbjct: 991 MIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEF 1050
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
+Y C+VD+LGRAG+L +A + +P E D + LLGAC H N+++ E+
Sbjct: 1051 VIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE-PDASIWGSLLGACRIHNNLDLAEK 1109
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + ++ + G +VL+ NI A R+ + E++R++M R A K G SLV
Sbjct: 1110 IADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLV 1162
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 68/382 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+S T ++ C G ++H + GF+ V+TAL++MY+
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKC---------- 355
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN---RSNG 183
P+ A LF+ +P ++VVSW +L GY + +S G
Sbjct: 356 -SCPDE--------------------AVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMG 394
Query: 184 A-------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P + ++ +L A + G + +HGY + GFN+ ++ V LI+ Y
Sbjct: 395 VFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNS-NVFVGASLIELY 453
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRV 295
+KCG + A+KLF+ + V +++V W+S+I+ + +HG G A+E F++M K ++PN V
Sbjct: 454 SKCGSLGDAVKLFKGMIV--RDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNV 511
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TFLS+L+ACSH GL H+G +VD+LGR G+L +A I
Sbjct: 512 TFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINR 571
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P V LLGAC H N+EMGE + + ++ + G Y+L+ NI A G++ +
Sbjct: 572 MPIP-AGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDN 630
Query: 394 AERLRRVMDERNALKFPGRSLV 415
LR + ER K G+S+V
Sbjct: 631 VAELRTRIKERGLKKMFGQSMV 652
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 157/352 (44%), Gaps = 54/352 (15%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+L+ +++ Y + P++A L+ Q+ + + D T ++ C L
Sbjct: 170 TVLWTSMVTGYQQNNDPEEALALFSQMVMMDC-------VVLDPVTLVSVVSACAQLLNV 222
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G+ +H ++ + F + + +L+N+Y G K ++ LF ++PE+++++W+ MI
Sbjct: 223 KAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACY 282
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
A +LF EM + EP+ +T+++ L A +
Sbjct: 283 ANNEAANEALNLFHEMIEKRF---------------------EPNSVTVVSALQACAVSR 321
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + IH +GF D VS LID Y KC C A+ LF+ + +K++VSW +
Sbjct: 322 NLEEGKKIHKIAVWKGFE-LDFSVSTALIDMYMKCSCPDEAVDLFQRLP--KKDVVSWVA 378
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY------------- 311
++SG+A +GM ++ F M G++P+ V + +L A S G+
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSG 438
Query: 312 --------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
L+++ + G L A K+ G+ + DVV+ ++ A HG
Sbjct: 439 FNSNVFVGASLIELYSKCGSLGDAVKLFKGMI--VRDVVIWSSMIAAYGIHG 488
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 31/280 (11%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N+ L Y ++ L+ + I T +P D+FT ++ C L L
Sbjct: 69 LWNSTLRSYCREKQWEETLRLFHLM--ICTAGEAP-----DNFTIPIALKACAGLRMLEL 121
Query: 87 GTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G +H K S ++V +ALV +Y G + ++ K+F+E + V W M+TG
Sbjct: 122 GKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ 181
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ + E A +LF +M + V +LD +T+++V+ A Q
Sbjct: 182 QNNDPEEALALFSQMVMMDCV----VLD----------------PVTLVSVVSACAQLLN 221
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
V+ +HG +R F+ D+ + N L++ YAK GC A LF + K+++SW+++
Sbjct: 222 VKAGSCVHGLVIRREFDG-DLPLVNSLLNLYAKTGCEKIAANLFSKMP--EKDVISWSTM 278
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
I+ +A + A+ F M + +PN VT +S L AC+
Sbjct: 279 IACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA 318
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 24/229 (10%)
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
T+S + + HA I G Q + T MYVS + +S +F+++P WNV
Sbjct: 729 TISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNV 788
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
MI G G + L+ +M + + +P + L +
Sbjct: 789 MIRGFATDGRFLSSLELYSKMMEKGL---------------------KPDKFAFPFALKS 827
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
++ ++IH + G + D+ V L+D YAKCG I +A +F+ ++V ++L
Sbjct: 828 CAGLSDLQRGKVIHQHLVCCGCSN-DLFVDAALVDMYAKCGDIEAARLVFDKMAV--RDL 884
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
VSWTS+ISG+A +G + F+ M+ G+ PNRV+ LSVL AC + G
Sbjct: 885 VSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLG 933
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+QLH+ + K G + T L ++Y L+ + K+FDE P N+ WN + +
Sbjct: 21 SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCRE 80
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ E LF M C A P TI L A +
Sbjct: 81 KQWEETLRLFHLMICT--------------------AGEAPDNFTIPIALKACAGLRMLE 120
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
++IHG+ +K D+ V + L++ Y+KCG + ALK+FE+ +R + V WTS+++
Sbjct: 121 LGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEF--QRPDTVLWTSMVT 178
Query: 268 GFAMHGMGKAAVENFER---MQKVGLKPNRVTFLSVLNACSH 306
G+ + + A+ F + M V L P VT +SV++AC+
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCVVLDP--VTLVSVVSACAQ 218
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 190/369 (51%), Gaps = 47/369 (12%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
+T+ ++R+C +LS +LG Q+HA I K + +V TALV+MY FL+D+ +F+
Sbjct: 533 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 592
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
L +R+L W V++ G + G+ E A F +M V +P
Sbjct: 593 LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV---------------------KP 631
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+E T+ + L + + + + +H K G + D+ V++ L+D YAKCGC+ A +
Sbjct: 632 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAG-QSGDMFVASALVDMYAKCGCVEDAEVV 690
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F+ + ++ VSW +II G++ HG G A++ FE M G P+ VTF+ VL+ACSH G
Sbjct: 691 FDGLV--SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMG 748
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HY C+VD+LGRAG+ + E + ++V++
Sbjct: 749 LIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL-TSNVLIWET 807
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+LGAC HGN+E GER K+ E+E +Y+L+ N+ A G + D +R +M R
Sbjct: 808 VLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGV 867
Query: 407 LKFPGRSLV 415
K PG S V
Sbjct: 868 KKEPGCSWV 876
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 25/247 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FTY+ ++ C G Q+HA KVG S ++V +ALV++Y G + + ++F
Sbjct: 228 NEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF 287
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+P++N V+WN ++ G + G+ E +LF M G+
Sbjct: 288 LCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRM---------------------TGSEI 326
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
S+ T+ VL +G +R Q++H + G D +S CL+D Y+KCG AL
Sbjct: 327 NFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCE-LDEFISCCLVDMYSKCGLAGDAL 385
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K+F + +E ++VSW++II+ G + A E F+RM+ G+ PN+ T S+++A +
Sbjct: 386 KVF--VRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443
Query: 307 -GGLHYG 312
G L+YG
Sbjct: 444 LGDLYYG 450
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 153/350 (43%), Gaps = 51/350 (14%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
HS + P + FT + L+ L G +HA + K GF+ V ALV MY+ +G
Sbjct: 424 HSGVIP--NQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGS 481
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
++D ++F+ R+L++WN +++G + +F +M + +G+
Sbjct: 482 VQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQM----------LAEGFN-- 529
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
P+ T +++L + V + +H K + D V L+D YAK
Sbjct: 530 ---------PNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF-VGTALVDMYAK 579
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
+ A +F + +++L +WT I++G+A G G+ AV+ F +MQ+ G+KPN T
Sbjct: 580 NRFLEDAETIFNRLI--KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLA 637
Query: 299 SVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSE 337
S L+ CS L G LVDM + G +E AE + G+ S
Sbjct: 638 SSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSR 697
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
D V ++ S HG + G+ + ++ G D V +L+
Sbjct: 698 --DTVSWNTIICGYSQHG--QGGKALKAFEAMLDEGTVPDEVTFIGVLSA 743
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 132/293 (45%), Gaps = 47/293 (16%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
YS ++RTC + N G +H + K G ++ +LVN+Y G + K+F E+P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
ER++V+W +ITG V G A +LF EM R G E +E
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEM-------------------RREG--VEANE 229
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T L A + + +H K G + D+ V + L+D YAKCG + A ++F
Sbjct: 230 FTYATALKACSMCLDLEFGKQVHAEAIKVG-DFSDLFVGSALVDLYAKCGEMVLAERVF- 287
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-L 309
+ + ++N VSW ++++GFA G + + F RM + ++ T +VL C++ G L
Sbjct: 288 -LCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNL 346
Query: 310 HYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
G CLVDM + G A K+ + I E DVV
Sbjct: 347 RAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI--EDPDVV 397
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 24/240 (10%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
F FT S +++ C G +H++ ++G + +++ LV+MY G D+ K+
Sbjct: 328 FSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
F + + ++V+W+ +IT L + G+ A +F+ M V+
Sbjct: 388 FVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI------------------- 428
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
P++ T+ +++ A G + + IH K GF +D V N L+ Y K G +
Sbjct: 429 --PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFE-YDNTVCNALVTMYMKIGSVQDG 485
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++FE + ++L+SW +++SGF + + F +M G PN TF+S+L +CS
Sbjct: 486 CRVFE--ATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCS 543
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 51/278 (18%)
Query: 19 NSLLHHTLL-FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
N L+ L + ++ Y+ +KA + Q+Q+ ++P + FT + +
Sbjct: 591 NRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR------EGVKP--NEFTLASSLSG 642
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C ++ + G QLH++ K G ++V +ALV+MY G ++D+ +FD L R+ V+W
Sbjct: 643 CSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSW 702
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
N +I G + G+ A FE M LD T P E+T + VL
Sbjct: 703 NTIICGYSQHGQGGKALKAFEAM-----------LD----------EGTVPDEVTFIGVL 741
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFD--------IRVSNCLIDTYAKCGCIFSALKLF 249
A G + K+ FN+ I C++D + G
Sbjct: 742 SACSHMGLIEE--------GKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFI 793
Query: 250 EDISVERKNLVSWTSIISGFAMHGM----GKAAVENFE 283
E++ + N++ W +++ MHG +AA++ FE
Sbjct: 794 EEMKL-TSNVLIWETVLGACKMHGNIEFGERAAMKLFE 830
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 39/352 (11%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELP---ERNLVTWNVMITGLVKWGELEYARS 155
F SH + AL+ Y++ G +S+LF + ++V+W M+ GL + G ++ AR
Sbjct: 123 FHSHAHSFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARK 182
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGA 205
LF+ MP RN++SW ++ GY + R A E + + + A G
Sbjct: 183 LFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGV 242
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H + E+ G D +++ ++D Y KCG + A +F+ + K L SW +
Sbjct: 243 LARGREVHRWVEQSGIT-MDEKLATAVVDMYCKCGSVEEAWHVFKVLPT--KGLTSWNCM 299
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I G A+HG K A+E F M++ + P+ VT ++VL AC+H G+
Sbjct: 300 IGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYG 359
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HYGC+VD+ GRAG L++A+K+ +P E D+ V L GAC H ++++GE +
Sbjct: 360 IEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPME-PDIGVLGALFGACKIHRDLDLGEAI 418
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+V+E++ N G YVL+ N+LA G++VD ++RR+MDERN K GRS++
Sbjct: 419 GWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVI 470
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/423 (31%), Positives = 213/423 (50%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + K+A L+K + + + +RP D T ++ C LG
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMK------TNVRP--DESTMVTVVSACAQSGSIELG 285
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H I GF S++ + AL+++Y K
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYS-------------------------------KC 314
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GELE A LFE +P ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y +KR NA +R S LID YAKCG I +A ++F S+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAKCGDIEAAHQVFN--SI 430
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L SW ++I GFAMHG A+ + F RM+K+G++P+ +TF+ +L+ACSH G+
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G L + + + + D V+ LL AC
Sbjct: 491 HIFRTMTQDYKMTPKLEHYGCMIDLLGHSG-LFKEAEEMINMMEMEPDGVIWCSLLKACK 549
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNVE+GE ++++E N G YVL+ NI A GR+ + + R +++++ K PG
Sbjct: 550 MHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGC 609
Query: 413 SLV 415
S +
Sbjct: 610 SSI 612
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 178/338 (52%), Gaps = 44/338 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + L L +S+T+ F++++C
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMIS--------LGLLPNSYTFPFVLKSCAKSKAFK 151
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G +YV+T+L++MYV G L+D+ K+FD+ P R++V++ +I G
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G +E A+ LF+E+P ++VVSW ++ GY A + P E T++
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q+G++ + +H + + GF + ++++ N LID Y+KCG + +A LFE +
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGS-NLKIVNALIDLYSKCGELETACGLFERLPY- 329
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G + G
Sbjct: 330 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Query: 313 --------------------CLVDMLGRAGRLEQAEKI 330
L+DM + G +E A ++
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A+ +F+ +++ NL+ W ++ G A+ +A++ + M +GL PN TF VL +C
Sbjct: 87 AISVFK--TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144
Query: 305 S-----------HGG-LHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+ HG L GC L+ M + GRLE A K+ P DVV
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR--DVVS 202
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ + G +E +++ E+ + + M + A G Y +A L + M +
Sbjct: 203 YTALIKGYASRGYIENAQKLFD---EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259
Query: 404 RN 405
N
Sbjct: 260 TN 261
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 190/371 (51%), Gaps = 47/371 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
++F+ S ++ C L++ QLHA + G + T+LV+ Y + G + K+F
Sbjct: 127 NAFSLSIVLGHCRALAH---ARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVF 183
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+P R+ + WNV+IT + + A LF+ M NGA
Sbjct: 184 DEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAM-----------------RGGENGA-- 224
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
EP ++T + +L A GA+ + + Y G+ +++V N LI Y KCGC+ A
Sbjct: 225 EPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGG-ELKVRNSLITMYTKCGCVDKAY 283
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++F +K++V+W+++ISG A +G GK A+ FE M + G+ P+ TF VL+ACSH
Sbjct: 284 QVF--CETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSH 341
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HYGC+VD++GRAG L+QA ++ + D +
Sbjct: 342 SGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIW 401
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
R LLGAC HG++++GERV ++E++ GDYVL+ N A V + +R++M E+
Sbjct: 402 RTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEK 461
Query: 405 NALKFPGRSLV 415
PG + V
Sbjct: 462 GIQTTPGCTTV 472
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 51/261 (19%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+ +N L+ Y+ K A L+ ++ + P D T L++ C +L
Sbjct: 191 TIAWNVLITCYTRNRRTKDALKLFDAMRG----GENGAEP--DDVTCILLLQACTSLGAL 244
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+ G ++ G+ + V +L+ MY G + + ++F E P++++VTW+ MI+GL
Sbjct: 245 DFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGL 304
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G + A S FEE M RS A P E T VL A +G
Sbjct: 305 ASNGFGKDAISAFEE------------------MGRSGVA---PDEQTFTGVLSACSHSG 343
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSN-----------CLIDTYAKCGCIFSALKL-FEDI 252
V GF FDI C++D + G + A +L +D+
Sbjct: 344 LV-----------DEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDM 392
Query: 253 SVERKNLVSWTSIISGFAMHG 273
V + W +++ +HG
Sbjct: 393 RVAPDATI-WRTLLGACRIHG 412
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 220/445 (49%), Gaps = 67/445 (15%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
SPS N R H T S + +N L+ Y+ +DSP +AF +++++++
Sbjct: 61 SPSKNLRHARSFVHHAATPS----PISWNILIRGYAASDSPLEAFWVFRKMRE------- 109
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
+ + T+ FL+++C S G Q+HA K G S VYV L+N Y +
Sbjct: 110 -RGAMPNKLTFPFLLKSCAVASALFEGKQVHADAVKCGLDSDVYVGNNLINFYGCCKKIV 168
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+ K+F E+PER +V+WN ++T V+ SL W G DG R
Sbjct: 169 DARKVFGEMPERTVVSWNSVMTACVE--------SL-----------WLG--DGIGYFFR 207
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
G EP E +++ +L A + G + + +H RG +++ L+D Y K G
Sbjct: 208 MWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGM-VLSVQLGTALVDMYGKSG 266
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-----GLKPNRV 295
+ A +FE +E +N+ +W+++I G A HG G+ A+E F M ++PN V
Sbjct: 267 ALGYARDVFE--RMENRNVWTWSAMILGLAQHGFGEEALELFAIMNNNNNDNRDIRPNYV 324
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
T+L VL ACSH G+ HYG +VD+LGRAGRLE+A +
Sbjct: 325 TYLGVLCACSHAGMVDEGYQYFHDMECVHGIKPLMTHYGAMVDVLGRAGRLEEAYEFIQS 384
Query: 334 IPSEITDVVVRRILLGACS---FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+P E D VV R LL AC+ H + +GERV++K+L E GG+ V++ N+ A VG
Sbjct: 385 MPIE-PDPVVWRTLLSACTVHDVHDHTGIGERVSKKLLLKEPRRGGNLVIVANMYAEVGM 443
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+ +A +RRVM + K G S V
Sbjct: 444 WEEAANVRRVMRDGGMKKVAGESCV 468
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 214/415 (51%), Gaps = 64/415 (15%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL- 86
+ L+ YS D P+ A LL ++ +I L+P + FT + L++ + ++
Sbjct: 84 WTALITGYSQHDRPQDALLLLPEMLRI------GLKP--NQFTLASLLKAASGVGSTDVL 135
Query: 87 -GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH + + G+ S+VYV+ A+++MY L+++ +FD + +N V+WN +I G
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYA 195
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G+ + A LF M NV +P+ T +VL A G+
Sbjct: 196 RKGQGDKAFCLFSNMLRENV---------------------KPTHFTYSSVLCACASMGS 234
Query: 206 VRNCQLIHG----YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+ + +H +GEK AF V N L+D YAK G I A K+F+ ++ ++++VS
Sbjct: 235 LEQGKWVHALMIKWGEK--LVAF---VGNTLLDMYAKSGSIEDAKKVFDRLA--KRDVVS 287
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W S+++G++ HG+GK A++ FE M + + PN +TFL VL ACSH GL
Sbjct: 288 WNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK 347
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY +VD+LGRAG L++A + +P + T V LLGAC H N+E+G
Sbjct: 348 KYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPT-AAVWGALLGACRMHKNMELG 406
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E++ G +VL+YNI A GR+ DA ++R++M E K P S V
Sbjct: 407 GYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWV 461
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 151/322 (46%), Gaps = 52/322 (16%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C L+ N G +HA++ F+ + + L+N+Y G L + KLFDE+ R+
Sbjct: 21 LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
+VTW +ITG + + A L EM R+ +P++ T+
Sbjct: 81 VVTWTALITGYSQHDRPQDALLLLPEM---------------LRI------GLKPNQFTL 119
Query: 194 LAVLPAIWQNGA--VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
++L A G+ V + +HG + G+++ ++ VS ++D YA+C + A +F D
Sbjct: 120 ASLLKAASGVGSTDVLQGRQLHGLCLRYGYDS-NVYVSCAILDMYARCHHLEEAQLIF-D 177
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGLH 310
+ V KN VSW ++I+G+A G G A F M + +KP T+ SVL AC S G L
Sbjct: 178 VMVS-KNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLE 236
Query: 311 YG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
G L+DM ++G +E A+K+ + DVV +L
Sbjct: 237 QGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKR--DVVSWNSMLTG 294
Query: 351 CSFHGNVEMGERVTRKVLEMER 372
S HG +G+ ++ EM R
Sbjct: 295 YSQHG---LGKVALQRFEEMLR 313
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 227/454 (50%), Gaps = 75/454 (16%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAF--LLYKQLQ-----------QIYT 56
+IH+H++ + L HH + N LL+F +++ S A+ LL+ Q++ + +
Sbjct: 22 KIHAHVIVSG-LHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFA 80
Query: 57 HSHSPLRPLF-------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103
S SP+ + D+FT+SF+++ C + ++H + + G+ + V
Sbjct: 81 QSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADV 140
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163
V T LV Y ++G + + ++FD++P R+LV WN MI+ + G + A + +M
Sbjct: 141 IVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSE 200
Query: 164 NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
NV +DG+ T++ ++ + GA+ +H + + G +
Sbjct: 201 NV-----DIDGF----------------TLVGLISSCAHLGALNIGVQMHRFARENGLDQ 239
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
+ V N LID YAKCG + A+ +F+ ++RK++ +W S+I G+ +HG G A+ F+
Sbjct: 240 -SLYVGNALIDMYAKCGSLDQAILIFD--RMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQ 296
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
+M + ++PN VTFL +L CSH GL HYGCLVD+ GRA
Sbjct: 297 QMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRA 356
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G+L++A +I S D V+ RILLG+C H NV +GE ++ E+ + GD +L+
Sbjct: 357 GKLDKALEIVSN--SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILL 414
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
I AG R+R+++ + PG S +
Sbjct: 415 ATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWI 448
>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g45350, chloroplastic-like [Vitis vinifera]
Length = 704
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 187/341 (54%), Gaps = 36/341 (10%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
+++N V G +++ LF+ +P+R +V+ M+ G K GE++ AR LF EMP +V+
Sbjct: 251 NSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVI 310
Query: 167 SWTGIL-----DGYTRMNRSNGASTEPSEI-----TILAVLPAIWQNGAVRNCQLIHGYG 216
S ++ +GY + N E+ T+L L AI Q G +H Y
Sbjct: 311 SCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYI 370
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
E GF+ + ++ LIDTYAKCG I +AL +FEDI + K++ W +I+SG A+HG+G+
Sbjct: 371 EDNGFSLSE-KLGVALIDTYAKCGSIDNALSVFEDI--DNKSIDHWNAILSGLAIHGLGE 427
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A E F M+K+ +KPN +TF+ VLNAC+H GL HY C+
Sbjct: 428 VAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCM 487
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+LG+AG +E+ +K + E D VV R LL AC H N +GE V + ++ ++ N
Sbjct: 488 VDILGQAGHVEETKKFVEKMSIEPND-VVWRTLLSACRNHENFTIGEPVAKHLISVDSYN 546
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
YVL+ NI AG G + D R+R +M +R+ K PG S +
Sbjct: 547 LSSYVLLSNIYAGFGIWNDVHRIRMMMKQRDLKKIPGCSQI 587
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/380 (21%), Positives = 167/380 (43%), Gaps = 52/380 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
++ ++N ++ +S + P++ F+++ + + D F++S +++ C L
Sbjct: 80 NSFIWNAIIKSFSHKEDPREVFVIFNLMLESGV--------CVDKFSFSLVLKACSRLGL 131
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G Q+H ++ K+ S V++ L+ +Y+ G L +LFD + +++ V++N MI G
Sbjct: 132 IKEGMQIHGLLGKMEIGSDVFLQNCLMCLYLRCGCLGIVRQLFDRMMKKDSVSFNSMIDG 191
Query: 144 LVKWGELEYARSLFEEMPCRN--VVSWTGILDGYTRMNRSNGASTEPSE-------ITIL 194
VK G ++ A LF+ MP ++SW ++ Y R + E E I+
Sbjct: 192 YVKHGMVKSAWELFDVMPMEQKILISWNSMISEYARSEERLKVAWELFEEMPKKDLISWN 251
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+++ + G + N + KR + +N +++ +AK G I A LF + +
Sbjct: 252 SMINGCVKCGKMENDHHLFNRMPKRXV----VSXAN-MVNGHAKLGEIDIARGLF--VEM 304
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG-- 312
+++S ++++ + +G +++NF M L + T L L+A + G H+
Sbjct: 305 PEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLG-HFDEG 363
Query: 313 --------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
L+D + G ++ A + I ++ D +L +
Sbjct: 364 VALHCYIEDNGFSLSEKLGVALIDTYAKCGSIDNALSVFEDIDNKSID--HWNAILSGLA 421
Query: 353 FHGNVEMGERVTRKVLEMER 372
HG +GE +EME+
Sbjct: 422 IHG---LGEVAFELFMEMEK 438
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 35/376 (9%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+S ++ C TL G ++HA K+G ++V+V+++L++MY +D+ +FD LP
Sbjct: 384 FSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP 443
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNR 180
E+N+V WN + +G G++ A LF++MP RN+ SW I+ GY + N
Sbjct: 444 EKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNA 503
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+ P EIT +VL A ++ ++ H K G I + L D YAK G
Sbjct: 504 MLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEE-SIFIGTALSDMYAKSG 562
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ ++F + +N V+WT++I G A +G + ++ E M G+ PN TFL++
Sbjct: 563 DLQSSKRMF--YQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLAL 620
Query: 301 LNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
L ACSHGGL HY C+VD+L RAGRL +AE + + PS+ +
Sbjct: 621 LFACSHGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSK-S 679
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ LL AC+ + N E+GER +++ E+ + N YVL+ N+ A GR+ DA R+R
Sbjct: 680 EANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRV 739
Query: 400 VMDERNALKFPGRSLV 415
+M K G S V
Sbjct: 740 LMKGTTLKKDGGCSWV 755
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 142/321 (44%), Gaps = 60/321 (18%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQL-HAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
+RP + T+ +I+ CV L + + I F+S + V +L+ +Y+ +G
Sbjct: 244 VRP--NGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAA 301
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ K+FDE+ +++V+W ++ + G+L+ AR + + MP RN VSW ++ + + R
Sbjct: 302 AARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQ--R 359
Query: 181 SNGAST------------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
N A P+ +VL A +R IH K G ++ ++ V
Sbjct: 360 GNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMG-SSTNVFV 418
Query: 229 SNCLIDTYAKC-------------------------------GCIFSALKLFEDISVERK 257
S+ LID Y KC G + A+ LF+ + +
Sbjct: 419 SSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPA--R 476
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDM 317
NL SW +IISG+A + A+ +F M G P +TF SVL AC++ L +
Sbjct: 477 NLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACAN-------LCSL 529
Query: 318 LGRAGRLEQAEKIALGIPSEI 338
+ G++ A+ I LG+ I
Sbjct: 530 V--TGKMAHAKTIKLGMEESI 548
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 39/236 (16%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ +V G + + LFD +PERN+V++ M+ L+K G + A L+E+ P +V +
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 216
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T + G+ R + A P+ IT + ++ A G I G K
Sbjct: 217 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 276
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----------------------- 255
F I V N LI Y + G +A K+F+++ V+
Sbjct: 277 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 336
Query: 256 ------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+N VSW ++I+ G AV+ + +M G +PN F SVL+AC+
Sbjct: 337 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 392
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
T+S ++ C L G HA K+G + +++ TAL +MY G L+ S ++F +
Sbjct: 514 ITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQ 573
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+PERN VTW MI GL + G E + L E+M + G T P
Sbjct: 574 MPERNDVTWTAMIQGLAENGFAEESILLLEDM----------MATGMT-----------P 612
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS----NCLIDTYAKCGCIFS 244
+E T LA+L A G V Q IH Y EK A+ I C++D A+ G +
Sbjct: 613 NEHTFLALLFACSHGGLVE--QAIH-YFEK--MQAWGISPKEKHYTCMVDVLARAGRLIE 667
Query: 245 ALKLFEDISVERKNLVSWTSIISG 268
A L + + SW +++S
Sbjct: 668 AEALLMK-TPSKSEANSWAALLSA 690
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
++D K G + A++L+E ++ +T+ ISGF + + A+ F +M G++
Sbjct: 188 MVDALMKRGRVAEAVELYEQ--CPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVR 245
Query: 292 PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
PN +TF+ ++ AC G +G + ++G A + E ++ + + + + +R
Sbjct: 246 PNGITFVCMIKACVGAG-EFGLAMSIVGSAIKSNFFES-SIEVQNSLITLYLR------- 296
Query: 352 SFHGNVEMGE-RVTRKVL-EMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
MG+ RKV EM+ + + + ++ + G A R+ M ERN + +
Sbjct: 297 -------MGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSW 349
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 201/379 (53%), Gaps = 40/379 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D +++ +IR + + + +L ++ + V NT L + YV G + + LF
Sbjct: 11 DVVSWNSMIRGLLKVGELSEACKL---FDEMPMKDAVSWNTIL-DGYVKAGEMNKAFGLF 66
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT---------- 176
+ +PERN+V+W+ M++G K G++E AR LF+ MP +N+VSWT I+ GY
Sbjct: 67 ESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIR 126
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ A +P + T++++L + ++G + + +H E+ + + VSN L+D Y
Sbjct: 127 SFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKC-SVNVSNALVDMY 185
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + AL +F +S +K+LVSW ++ G AMHG G+ A++ F M++ G +P++VT
Sbjct: 186 AKCGQVDRALSVFNGMS--KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVT 243
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
++VL AC H G HYGC+VD+LGR GRL++A ++ +
Sbjct: 244 LVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSM 303
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E +VV+ LLGAC H V + E V + ++E + G+Y L+ NI A G +
Sbjct: 304 PVE-PNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSV 362
Query: 395 ERLRRVMDERNALKFPGRS 413
+R M K G S
Sbjct: 363 ANVRLQMKNFGIQKPSGAS 381
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 55/256 (21%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+LF + ER++V+WN MI GL+K GEL A LF+EMP ++ VSW ILDGY + N
Sbjct: 2 RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
A + ++ + V ++ G Y K G +
Sbjct: 62 A---------FGLFESMPERNVVSWSTMVSG---------------------YCKAGDME 91
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A LF+ + V KNLVSWT I+SG+A+ G+ K A+ +FE+M++ GLKP+ T +S+L +
Sbjct: 92 MARMLFDRMPV--KNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILAS 149
Query: 304 CSHGGL--------------HYGC-------LVDMLGRAGRLEQAEKIALGIPSEITDVV 342
C+ GL Y C LVDM + G++++A + G+ + D+V
Sbjct: 150 CAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKK--DLV 207
Query: 343 VRRILLGACSFHGNVE 358
+L + HG+ E
Sbjct: 208 SWNCMLQGLAMHGHGE 223
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 30/238 (12%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y++ K A ++Q+++ + L+P D T ++ +C LG ++H I
Sbjct: 115 YAVKGLAKDAIRSFEQMEE------AGLKP--DDGTVISILASCAESGLLGLGKRVHTSI 166
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
++ ++ V V+ ALV+MY G + + +F+ + +++LV+WN M+ GL G E A
Sbjct: 167 ERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKAL 226
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
LF M R G P ++T++AVL A G V
Sbjct: 227 QLFSIM-------------------RQEG--FRPDKVTLVAVLCACVHAGFVDEGIRYFN 265
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
E+ I C++D + G + A +L + + VE N+V W +++ MH
Sbjct: 266 NMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVE-PNVVIWGTLLGACRMH 322
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 213/419 (50%), Gaps = 62/419 (14%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH----SPLRPLFDSFTYSFLIRTCV 79
T +N+++ +S + SP QLQ I ++H S RP D++T+SFL++ C
Sbjct: 69 QTPAWNSMIRGFSQSPSPL-------QLQAIVFYNHMLSASHARP--DTYTFSFLLKACE 119
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
++H I + G+ V + T L+ Y G ++ + K+F+E+P R+LV+WN
Sbjct: 120 EAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNS 179
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
MI+ + G E A ++++M NV DG+ T++++L +
Sbjct: 180 MISCYCQTGLHEEALKMYDQMRISNVG-----FDGF----------------TLVSLLSS 218
Query: 200 IWQNGAVRNCQLIHGY-GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
GA+ +H + GE+R +I V N LID YAKCG + SAL +F S+ +++
Sbjct: 219 CAHVGALHMGVQMHRFAGERRLVE--NIFVGNALIDMYAKCGSLASALSIFN--SMPKRD 274
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+ +W S+I G+ +HG G A+ F M G++PN +TFL +L CSH GL
Sbjct: 275 VFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFH 334
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+ GRAG+L++A ++ PS+ D V+ R LLG+C H N
Sbjct: 335 MMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQ-HDPVLWRTLLGSCKIHRN 393
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VE+GE R ++++ GD VL+ I A R+R+++ R PG S +
Sbjct: 394 VEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 452
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS-------------NGASTEPSEITIL 194
G L YA+ +F + +W ++ G+++ + + P T
Sbjct: 53 GSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFS 112
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+L A + C+ +HG+ + G++ D+ + LI +YA G I +A K+FE++
Sbjct: 113 FLLKACEEAKEEGKCREVHGFIIRFGYDQ-DVVLCTNLIRSYAGNGLIETAHKVFEEMPA 171
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGC 313
++LVSW S+IS + G+ + A++ +++M+ + + T +S+L++C+H G LH G
Sbjct: 172 --RDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG- 228
Query: 314 LVDMLGRAGRLEQAEKIALG 333
V M AG E I +G
Sbjct: 229 -VQMHRFAGERRLVENIFVG 247
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 98/446 (21%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P DSFTYSFLI+ + +H+ + K+G +V AL++ Y G D+
Sbjct: 432 PRRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 490
Query: 124 K-------------------------------LFDELPERNLVTWNVMITGLVKWGELEY 152
K LFDE+PE++ V+WN ++ G K GE+E
Sbjct: 491 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 550
Query: 153 ARSLFEEMPCRNVVSWTGILDGY-------------TRMNRSN----------------- 182
A LF+ MP RNVVSW+ ++ GY +M N
Sbjct: 551 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 610
Query: 183 -----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
AS E ++++L A ++G++ + IH Y KR V N
Sbjct: 611 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNA 669
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LID + KCGC+ A +F+ +V+ K+ VSW SII GFAMHG G A+E F +M++ G
Sbjct: 670 LIDMFCKCGCVNRADYVFDTETVQ-KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFN 728
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+ VT ++VL+AC+H G HYGC++D+LGR G +++A
Sbjct: 729 PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVD 788
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P E +V+ LL AC H NVE E ++ +++ N G+Y ++ NI A G
Sbjct: 789 LIKSMPWEPNEVIWGS-LLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 847
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
++ D + R M + K G S V
Sbjct: 848 QWSDMAKARMQMKGTGSQKTAGSSWV 873
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 224/430 (52%), Gaps = 64/430 (14%)
Query: 18 TNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
N + H T LLFN+++ YSL + + LL+ Q++ + + P D FT++
Sbjct: 60 ANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMK------NRGIWP--DEFTFA 111
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L+++C + +G +H V+ VGF+ + ++++Y S G ++D+ K+FDE+ +R
Sbjct: 112 PLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDR 171
Query: 133 NL-----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
++ V+WN MI GL + G A LF EM W G+ E
Sbjct: 172 DMRDRSVVSWNSMIAGLEQSGRDGEALELFREM-------WD---HGF-----------E 210
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P + T++ +LP + GAV + IH Y E I V N L+D Y KCG + +A +
Sbjct: 211 PDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWR 270
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+F ++ +KN+VSW ++ISG +G G+ + FE M G++PN TF+ VL+ C+H
Sbjct: 271 VFNEMP--QKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHA 328
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL H+GC+VD+L R G +E+A + +P + V+
Sbjct: 329 GLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMR-PNAVLWG 387
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL A G+V+ E ++++E+E N G+YVL+ N+ A G++ + E++R +M E+N
Sbjct: 388 SLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKN 447
Query: 406 ALKFPGRSLV 415
K PG+S+V
Sbjct: 448 IRKNPGQSMV 457
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 189/371 (50%), Gaps = 47/371 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ +S I C + N G Q+HA G+ + + ALV++Y G +K++ F
Sbjct: 515 DNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEF 574
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+++ ++ ++WN +I+G + G E A +F +M N A
Sbjct: 575 EKIDAKDSISWNGLISGFAQSGYCEDALKVFAQM---------------------NRAKL 613
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
E S T + + A ++ + IH KRGF++ DI VSN LI YAKCG I A
Sbjct: 614 EASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDS-DIEVSNALITFYAKCGSIEDAR 672
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+ F + KN VSW ++I+G++ HG G AV FE+M++VG PN VTF+ VL+ACSH
Sbjct: 673 REF--CEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSH 730
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VD++ RAG L +A K +P E D +
Sbjct: 731 VGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIE-PDATIW 789
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
R LL AC+ H NVE+GE + +LE+E + YVL+ N+ A G++ ++ R++M R
Sbjct: 790 RTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNR 849
Query: 405 NALKFPGRSLV 415
K PGRS +
Sbjct: 850 GVKKEPGRSWI 860
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 186/404 (46%), Gaps = 53/404 (13%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H LT + + +L+N +L + D+ ++F +++Q+Q L P + FTY
Sbjct: 369 HEMFLTAQT--ENVVLWNVMLVAFGKLDNLSESFRIFRQMQI------KGLIP--NQFTY 418
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
++RTC ++ +LG Q+H + K GFQ +VYV + L++MY G L + + L E
Sbjct: 419 PSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTE 478
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
++V+W +I+G + A F+EM R + S G++ S I
Sbjct: 479 DDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDN---IGFS------------SAI 523
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+ A + A+ Q + + GY E D+ + N L+ YA+CG I A FE
Sbjct: 524 SACAGIQALNQGRQIHAQSYVSGYSE-------DLSIGNALVSLYARCGRIKEAYLEFEK 576
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311
I + K+ +SW +ISGFA G + A++ F +M + L+ + TF S ++A ++
Sbjct: 577 I--DAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAAN----- 629
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
+ ++ + G+ A I G S D+ V L+ +F+ E R+ EM
Sbjct: 630 --IANI--KQGKQIHAMIIKRGFDS---DIEVSNALI---TFYAKCGSIEDARREFCEMP 679
Query: 372 RGNGGDYVLMYNILAGVGRYVDA----ERLRRVMDERNALKFPG 411
N + M + G +A E++++V + N + F G
Sbjct: 680 EKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVG 723
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 168/384 (43%), Gaps = 50/384 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN+L+ + A L+ ++++ Y L+P D T + L+ C + G
Sbjct: 282 FNSLISGLAQQGFSDGALELFTKMKRDY------LKP--DCVTVASLLSACASNGALCKG 333
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLH+ + K G S + V AL+++YV+ +K + ++F N+V WNVM+ K
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKL 393
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
L + +F +M + ++ P++ T ++L GA+
Sbjct: 394 DNLSESFRIFRQMQIKGLI---------------------PNQFTYPSILRTCTSVGALD 432
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IH K GF F++ V + LID YAK G + +A + ++ ++VSWT++IS
Sbjct: 433 LGEQIHTQVIKTGFQ-FNVYVCSVLIDMYAKHGKLDTAHVILRTLT--EDDVVSWTALIS 489
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327
G+A H + A+++F+ M G++ + + F S ++AC+ + L + GR A
Sbjct: 490 GYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG--------IQALNQ-GRQIHA 540
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ G +++ L C R+ LE E+ + D + +++G
Sbjct: 541 QSYVSGYSEDLSIGNALVSLYARCG---------RIKEAYLEFEKIDAKDSISWNGLISG 591
Query: 388 VGRYVDAERLRRVMDERNALKFPG 411
+ E +V + N K
Sbjct: 592 FAQSGYCEDALKVFAQMNRAKLEA 615
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 134/283 (47%), Gaps = 45/283 (15%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
+ +S ++ C + ++G QLHA++ K G YV ALV +Y + + K+F +
Sbjct: 214 YVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSK 273
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ ++ V++N +I+GL + G F + G L+ +T+M R +P
Sbjct: 274 MQSKDEVSFNSLISGLAQQG--------FSD----------GALELFTKMKRD---YLKP 312
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+T+ ++L A NGA+ + +H Y K G ++ D+ V L+D Y C I +A ++
Sbjct: 313 DCVTVASLLSACASNGALCKGEQLHSYVIKAGISS-DMIVEGALLDLYVNCSDIKTAHEM 371
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F ++ + +N+V W ++ F + F +MQ GL PN+ T+ S+L C+ G
Sbjct: 372 F--LTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429
Query: 309 -------LH------------YGC--LVDMLGRAGRLEQAEKI 330
+H Y C L+DM + G+L+ A I
Sbjct: 430 ALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVI 472
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
TY +L+ C+ +LH I K+GF + + LV++Y +LG L K+F+++
Sbjct: 12 TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P R++ +W+ +I+G ++ ++M R +LD ++ M N P+
Sbjct: 72 PNRSVRSWDKIISGFME-----------KKMSNR-------VLDLFSCMIEEN---VSPT 110
Query: 190 EITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
EI+ +VL A +R + IH G I +SN LI YAK G I SA K+
Sbjct: 111 EISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPI-ISNPLIGLYAKNGLIISARKV 169
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
F+++ K+ VSW ++ISGF+ +G + A+ F M G+ P F SVL+ C+
Sbjct: 170 FDNLCT--KDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCT 224
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/469 (28%), Positives = 231/469 (49%), Gaps = 90/469 (19%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFT 70
+++ + ++ + + + NT++ Y+ + P KA LY + + S D F
Sbjct: 57 VYAQAIFEDTTMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKS--------DHFM 108
Query: 71 YSFLIRTCVTLSYPN-------------LGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
Y F ++ C + + N G ++H + ++G ++ +LV +Y G
Sbjct: 109 YPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCG 168
Query: 118 FLKDSSKLFDELPERNLVTWNVMITG---------------------LVKW--------- 147
FL + ++FDE+ E+ + +WNVMI+ +V W
Sbjct: 169 FLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIR 228
Query: 148 -GELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAV 196
G++E A+++F+EMP R+ VSW ++ GY ++ A+ E ++IT+++V
Sbjct: 229 LGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISV 288
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A + GA+ + IH ++R + + +SN L+D YAKCG + A ++F ++ +
Sbjct: 289 LGACAETGALEIGRKIHLSLKQREYK-IEGYLSNALVDMYAKCGHLNLAWEVFSELKM-- 345
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNACSHGGL----- 309
K++ W ++I A+HG + A+ F M+ G +PNRVTF+ VL ACSH GL
Sbjct: 346 KHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGR 405
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+L R G L++A + +P E + V+ R LLGAC
Sbjct: 406 KFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFE-ANSVLWRTLLGACR 464
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
H +V++ E +++ +ME GDYVL+ NI A R+ D ER +++
Sbjct: 465 VHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERASKIL 513
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 201/386 (52%), Gaps = 40/386 (10%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVI----SKVGFQSHVYVNTALVNMYVSLGFLKD 121
+D FTY+ ++ C + G Q+HA I + + VN AL +Y G + +
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---- 177
+ ++F+++P ++LV+WN +++G V G ++ A+S FEEMP RN+++WT ++ G +
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408
Query: 178 ------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
NR EP + + A A+ + + +H + GF++ + N
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDS-SLSAGNA 467
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LI YAKCG + +A LF +++ + VSW ++I+ HG G A+E FE M K +
Sbjct: 468 LITMYAKCGVVEAAHCLF--LTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDIL 525
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+R+TFL+VL+ CSH GL HY ++D+L RAG+ +A+
Sbjct: 526 PDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKD 585
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P E + +L G C HGN+++G + ++ E+ + G YVL+ N+ A VG
Sbjct: 586 MIETMPVEPGPPIWEALLAG-CRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVG 644
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
R+ D ++R++M ++ K PG S +
Sbjct: 645 RWDDVAKVRKLMRDKGVKKEPGCSWI 670
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 100/405 (24%), Positives = 166/405 (40%), Gaps = 83/405 (20%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY-SFLIRTCVTLSY 83
T+ +N ++ YS + A L++ L + + RP D+FT+ S L + +
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLR------NGFRP--DNFTFTSVLGALALIVED 165
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---------LKDSSKLFDELPERNL 134
Q+H + K G V AL++++V + + KLFDE+ ER+
Sbjct: 166 EKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDE 225
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGA 184
++W MI G V+ GEL+ AR + M + VV+W ++ GY +
Sbjct: 226 LSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLL 285
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGY---GEKRGFNAFDIRVSNCLIDTYAKCGC 241
+ E T +VL A G + + +H Y E R F + V+N L Y KCG
Sbjct: 286 GIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGK 345
Query: 242 IFSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMH 272
+ A ++F + V+ +NL++WT +ISG A +
Sbjct: 346 VDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQN 405
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACS------HG-GLHY-------------- 311
G G+ +++ F RM+ G +P F + AC+ HG LH
Sbjct: 406 GFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAG 465
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+ M + G +E A + L +P D V ++ A HG+
Sbjct: 466 NALITMYAKCGVVEAAHCLFLTMP--YLDSVSWNAMIAALGQHGH 508
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 60/295 (20%)
Query: 71 YSFLIRTCVT---LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
Y+ ++ C +SY ++ +HA + GF+ Y+ L+++Y L + LFD
Sbjct: 16 YAAQLQQCCPHNPMSY-SIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFD 74
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGA- 184
E+ + ++V +I G AR +F P R+ V + ++ GY+ N GA
Sbjct: 75 EIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAI 134
Query: 185 ---------STEPSEITILAVLPA---IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
P T +VL A I ++ + CQ IH K G + F V N L
Sbjct: 135 ELFRDLLRNGFRPDNFTFTSVLGALALIVEDE--KQCQQIHCAVVKSG-SGFVTSVLNAL 191
Query: 233 IDTYAKCG---------CIFSALKLFEDIS-----------------------------V 254
+ + KC + +A KLF++++ +
Sbjct: 192 LSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGM 251
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
K +V+W ++ISG+ HG A+E F +M +G++ + T+ SVL+AC++ G
Sbjct: 252 TEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGF 306
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 47/369 (12%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT+S ++ C L+ +G Q+ K+GF S V +L++MY G + D+ K FD
Sbjct: 377 FTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI 436
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
L E+NL+++N +I K E A LF E+ ++ GAS
Sbjct: 437 LFEKNLISYNTVIDAYAKNLNSEEALELFNEIE-----------------DQGMGASA-- 477
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
T ++L G + + IH K G + V N LI Y++CG I SA ++
Sbjct: 478 --FTFASLLSGAASIGTIGKGEQIHARVIKSGLK-LNQSVCNALISMYSRCGNIESAFQV 534
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
FED+ E +N++SWTSII+GFA HG A+E F +M + G++PN VT+++VL+ACSH G
Sbjct: 535 FEDM--EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVG 592
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HY C+VD+LGR+G L +A + +P + D +V R
Sbjct: 593 LVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYK-ADALVWRT 651
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LGAC HGN+E+G+ + ++E E + Y+L+ N+ A ++ + +R+ M E+N
Sbjct: 652 FLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNL 711
Query: 407 LKFPGRSLV 415
+K G S V
Sbjct: 712 IKEAGCSWV 720
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 165/377 (43%), Gaps = 76/377 (20%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYK------------QL 51
S ++ T +H L T + L ++ N+L+ YS +KA +++ +
Sbjct: 81 SFDIGTLVHEKL-TQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAM 139
Query: 52 QQIYTHSHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99
+ +++ R L + + ++ R C T + ++G + + K G+
Sbjct: 140 VSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY 199
Query: 100 -QSHVYVNTALVNMYVS-LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
QS V V L++M+V G L + K+F+++PERN VTW +MIT L+++G A LF
Sbjct: 200 LQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLF 259
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
EM IL GY EP T+ V+ A + Q +H
Sbjct: 260 LEM----------ILSGY-----------EPDRFTLSGVISACANMELLLLGQQLHSQAI 298
Query: 218 KRGFNAFDIRVSNCLIDTYAKC---GCIFSALKLFEDISVERKNLVSWTSIISGFAMH-G 273
+ G D V CLI+ YAKC G + +A K+F+ I N+ SWT++I+G+ G
Sbjct: 299 RHGLT-LDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL--DHNVFSWTAMITGYVQKGG 355
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------------------- 312
+ A++ F M + PN TF S L AC++ L G
Sbjct: 356 YDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN 415
Query: 313 CLVDMLGRAGRLEQAEK 329
L+ M R+GR++ A K
Sbjct: 416 SLISMYARSGRIDDARK 432
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 116/263 (44%), Gaps = 29/263 (11%)
Query: 47 LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106
L+K + + H P D TYS ++ C+ ++GT +H +++ Q
Sbjct: 47 LHKAISTLEHMVHQGSHP--DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104
Query: 107 TALVNMYVSLGFLKDSSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
+L+++Y G + ++ +F + R+L++W+ M++ M R +
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFAN-----------NNMGFRAL 153
Query: 166 VSWTGILD-GYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+++ +++ GY P+E A A V I G+ K G+
Sbjct: 154 LTFVDMIENGYY-----------PNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQS 202
Query: 225 DIRVSNCLIDTYAKC-GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D+ V LID + K G + SA K+FE + +N V+WT +I+ G A++ F
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMP--ERNAVTWTLMITRLMQFGYAGEAIDLFL 260
Query: 284 RMQKVGLKPNRVTFLSVLNACSH 306
M G +P+R T V++AC++
Sbjct: 261 EMILSGYEPDRFTLSGVISACAN 283
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 114/263 (43%), Gaps = 47/263 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ + ++A L+ +++ + +FT++ L+ ++ G
Sbjct: 445 YNTVIDAYAKNLNSEEALELFNEIEDQGMGA--------SAFTFASLLSGAASIGTIGKG 496
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+HA + K G + + V AL++MY G ++ + ++F+++ +RN+++W +ITG K
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKH 556
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G A LF +M V P+ +T +AVL A G V
Sbjct: 557 GFATQALELFHKMLEEGV---------------------RPNLVTYIAVLSACSHVGLVN 595
Query: 207 ------RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
++ HG + A C++D + G + A++ + + LV
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYA-------CMVDILGRSGSLSEAIQFINSMPYKADALV 648
Query: 261 SWTSIISGFAMHG---MGKAAVE 280
W + + +HG +GK A +
Sbjct: 649 -WRTFLGACRVHGNLELGKHAAK 670
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 213/419 (50%), Gaps = 62/419 (14%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH----SPLRPLFDSFTYSFLIRTCV 79
T +N+++ +S + SP QLQ I ++H S RP D++T+SFL++ C
Sbjct: 87 QTPAWNSMIRGFSQSPSPL-------QLQAIVFYNHMLSASHARP--DTYTFSFLLKACE 137
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
++H I + G+ V + T L+ Y G ++ + K+F+E+P R+LV+WN
Sbjct: 138 EAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNS 197
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
MI+ + G E A ++++M NV DG+ T++++L +
Sbjct: 198 MISCYCQTGLHEEALKMYDQMRISNVG-----FDGF----------------TLVSLLSS 236
Query: 200 IWQNGAVRNCQLIHGY-GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
GA+ +H + GE+R +I V N LID YAKCG + SAL +F S+ +++
Sbjct: 237 CAHVGALHMGVQMHRFAGERRLVE--NIFVGNALIDMYAKCGSLASALSIFN--SMPKRD 292
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+ +W S+I G+ +HG G A+ F M G++PN +TFL +L CSH GL
Sbjct: 293 VFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFH 352
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+ GRAG+L++A ++ PS+ D V+ R LLG+C H N
Sbjct: 353 MMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQ-HDPVLWRTLLGSCKIHRN 411
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VE+GE R ++++ GD VL+ I A R+R+++ R PG S +
Sbjct: 412 VEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 470
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS-------------NGASTEPSEITIL 194
G L YA+ +F + +W ++ G+++ + + P T
Sbjct: 71 GSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFS 130
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+L A + C+ +HG+ + G++ D+ + LI +YA G I +A K+FE++
Sbjct: 131 FLLKACEEAKEEGKCREVHGFIIRFGYDQ-DVVLCTNLIRSYAGNGLIETAHKVFEEMPA 189
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGC 313
++LVSW S+IS + G+ + A++ +++M+ + + T +S+L++C+H G LH G
Sbjct: 190 --RDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG- 246
Query: 314 LVDMLGRAGRLEQAEKIALG 333
V M AG E I +G
Sbjct: 247 -VQMHRFAGERRLVENIFVG 265
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 197/364 (54%), Gaps = 47/364 (12%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
++ C + + G LH V+ K+G V +L+NMY LGFL +S+LF+E+P R+
Sbjct: 247 VVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS 306
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
LV+WN M+ G E LF N++ GI P + T+
Sbjct: 307 LVSWNSMVVIHNHNGYAEKGMDLF------NLMKRAGI---------------NPDQATM 345
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+A+L A G R + IH Y + GFNA DI ++ L++ YAK G + ++ +FE+I
Sbjct: 346 VALLRACTDTGLGRQAESIHAYIHRCGFNA-DIIIATALLNLYAKLGRLNASEDIFEEI- 403
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+ ++ ++WT++++G+A+H G+ A++ F+ M K G++ + VTF +L+ACSH GL
Sbjct: 404 -KDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEG 462
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGR+GRLE A ++ +P E + V LLGAC
Sbjct: 463 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSS-GVWGALLGAC 521
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
+GNVE+G+ V ++L ++ + +Y+++ NI + G + A ++R +M ER + PG
Sbjct: 522 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPG 581
Query: 412 RSLV 415
S +
Sbjct: 582 CSFI 585
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 84/395 (21%)
Query: 65 LFDSFTYS--FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
L DS S F I +C ++SY + +HA + K S ++ LV+MY LG+ +D+
Sbjct: 137 LADSIVQSLVFAISSCTSVSY---CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDA 193
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+LFDE+P R+LV+WN +++GL G L L+ + RM +
Sbjct: 194 QRLFDEMPNRDLVSWNSLMSGLSGRGYL------------------GACLNAFCRMRTES 235
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
G +P+E+T+L+V+ A GA+ + +HG K G + +V N LI+ Y K G +
Sbjct: 236 G--RQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSG-KAKVVNSLINMYGKLGFL 292
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
+A +LFE++ V ++LVSW S++ +G + ++ F M++ G+ P++ T +++L
Sbjct: 293 DAASQLFEEMPV--RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLR 350
Query: 303 ACSHGGLH----------YGC-----------LVDMLGRAGRLEQAEKIALGIPSEIT-- 339
AC+ GL + C L+++ + GRL +E I I T
Sbjct: 351 ACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIA 410
Query: 340 ---------------------DVVVRR----------ILLGACSFHGNVEMGERVTRKVL 368
D++V+ LL ACS G VE G++ +
Sbjct: 411 WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMS 470
Query: 369 EMERGNG--GDYVLMYNILAGVGRYVDAERLRRVM 401
E+ R Y M ++L GR DA L + M
Sbjct: 471 EVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 505
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 212/420 (50%), Gaps = 45/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ TL+ + + K+A LY Q+ RP F S ++ C +L G
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLA------DGCRPNISCF--SSVLGACASLQDLRSG 397
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H K+ ++V+V++AL++MY L D+ +F LP++N+V WN +I+G
Sbjct: 398 RKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNN 457
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITILAV 196
++ A LF++MP RNV SW I+ GY + NR + P EIT +V
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQ-NRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A ++ +++H K G I V L D YAK G + S+ ++F ++ +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKE-SIFVGTALSDMYAKSGDLDSSKRVFYEMP--K 573
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+N V+WT++I G A +G + ++ FE M G+ PN TFL++L ACSH GL
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHY 633
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG L +AE + L I S+ ++ LL AC+ +
Sbjct: 634 FEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESK-SEANSWAALLSACNIYR 692
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N EMGER +++ E+++ N YVL+ N+ A G++ DA +R +M N K G S V
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 171/403 (42%), Gaps = 64/403 (15%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
F ++ + L + PK A ++ ++ + SP + T +I+ C+ +L
Sbjct: 212 FFTAMIAGFVLNELPKDALGVF---HEMLSCGVSP-----NEITLVSVIKACIGAGEFDL 263
Query: 87 GTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ + K ++ V +L+ +Y+ G + ++FDE+ R++V+W ++
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILA 195
+ G+LE AR + +EMP RN VSW ++ + + + A + P+ +
Sbjct: 324 ELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--- 252
VL A +R+ + IH K + ++ VS+ LID Y KC + A +F +
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSN-NVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442
Query: 253 --------------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ +N+ SW SIISG+A + A+++F M
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502
Query: 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G P +TF SVL AC+ C ++M G++ A+ I LGI I V
Sbjct: 503 ASGQSPGEITFSSVLLACAS-----LCSLEM----GKMVHAKIIKLGIKESI---FVGTA 550
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
L + G+++ +RV EM + N + M LA G
Sbjct: 551 LSDMYAKSGDLDSSKRV---FYEMPKRNDVAWTAMIQGLAENG 590
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 68/322 (21%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V +V G + + +LFD +PER++V++ M+ L+K G + A L+ + P +V +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPA------------------- 199
T ++ G+ A P+EIT+++V+ A
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 200 ---IWQNGAVRNCQLIHGY-------GEKRGFNAFDIR--VS-NCLIDTYAKCGCIFSAL 246
+ +N VRN LI Y +R F+ ++R VS L+D YA+ G + A
Sbjct: 274 SNLLDKNLGVRN-SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGAR 332
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS- 305
++ +++ +N VSW ++++ G K AV + +M G +PN F SVL AC+
Sbjct: 333 RVLDEMP--ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 306 -----------HGGLHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
+ L C L+DM + +L A+ I +P + ++V
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK--NIVCWN 448
Query: 346 ILLGACSFHGNVEMGERVTRKV 367
L+ S + + E + +K+
Sbjct: 449 SLISGYSNNSKMVEAEELFKKM 470
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 80/268 (29%)
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
++ M+ VK G++ AR LF+ MP R+VVS YT M
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVS-------YTTM----------------- 185
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
+ A+ + G+VR+ ++ Y +C ++ F
Sbjct: 186 -VDALMKRGSVRDA-----------------------VELYRQCP--LCSVPFF------ 213
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315
T++I+GF ++ + K A+ F M G+ PN +T +SV+ AC G + +
Sbjct: 214 -------TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG-EFDLAM 265
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
++G A + +K LG+ + + + +R+ G+ + R+ EME +
Sbjct: 266 SIVGLAMKSNLLDK-NLGVRNSLITLYLRK---------GDADAARRMFD---EMEVRDV 312
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDE 403
+ + ++ A +G D E RRV+DE
Sbjct: 313 VSWTALLDVYAELG---DLEGARRVLDE 337
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/389 (30%), Positives = 201/389 (51%), Gaps = 44/389 (11%)
Query: 67 DSFTYSFLIRTCVT----LSYPNLGTQLHAVISKVGFQ-SHVYV---NTALVNMYVSLGF 118
D +TY+ LI C + + N G Q+H I + + SH +V N AL+ Y
Sbjct: 282 DEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDR 341
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR- 177
+ ++ ++FD++P R++++WN +++G V +E A S+F EMP RNV++WT ++ G +
Sbjct: 342 MIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQN 401
Query: 178 ---------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
N+ EP + + A G++ N Q IH + G ++ +
Sbjct: 402 GFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDS-GLSA 460
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N LI Y++CG + SA +F +++ + VSW ++I+ A HG G A+E FE+M K
Sbjct: 461 GNALITMYSRCGVVESAESVF--LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKE 518
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+ P+R+TFL++L AC+H GL HY L+D+L RAG +
Sbjct: 519 DILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLK 578
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A+ + +P E + LL C HGN+E+G + ++LE+ G G Y+++ N+ A
Sbjct: 579 AQSVIKSMPFE-AGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYA 637
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
+G++ + R+R +M ER K PG S V
Sbjct: 638 ALGQWDEVARVRLLMRERGVKKEPGCSWV 666
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 187/454 (41%), Gaps = 96/454 (21%)
Query: 3 SSNNVTTRIHSHLLTTNSL-LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
SS NV ++ L L + T+ +N ++ YS + A L+ Q+++ + P
Sbjct: 83 SSGNV--KLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKR---YGFLP 137
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQ-LHAVISKVGFQSHVYVNTALVNMYV------ 114
D FT+S ++ ++ Q LH + K+G V AL++ YV
Sbjct: 138 -----DPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSP 192
Query: 115 ---SLGFLKDSSKLFDELPERNLV--TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
S + + K+FDE P+ + +W MI G V+ +L AR L + + V+W
Sbjct: 193 LVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWN 252
Query: 170 GILDGYTR----------MNRSNGASTEPSEITILAVLPAIW---QNGAVRNC-QLIHGY 215
++ GY R R + + E T +++ A + + NC + +HGY
Sbjct: 253 AMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGY 312
Query: 216 GEK---RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----------------- 255
+ + F + V+N LI Y K + A ++F+ + V
Sbjct: 313 ILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQR 372
Query: 256 ------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
+N+++WT +ISG A +G G+ ++ F +M+ GL+P F + A
Sbjct: 373 IEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITA 432
Query: 304 CS--------------------HGGLHYG-CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
CS GL G L+ M R G +E AE + L +P D V
Sbjct: 433 CSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMP--YVDSV 490
Query: 343 VRRILLGACSFHGN----VEMGERVTRKVLEMER 372
++ A + HG+ +E+ E++ ++ + +R
Sbjct: 491 SWNAMIAALAQHGHGVKAIELFEQMMKEDILPDR 524
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 54/272 (19%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ +HA I GF+ + ++ L+N+Y + + KLFD++P+ ++V +++
Sbjct: 23 IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82
Query: 146 KWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGA----------STEPSEITI 193
G ++ A+ LF P R+ VS+ ++ Y+ N + A P T
Sbjct: 83 SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142
Query: 194 LAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC---------IF 243
+VL A+ R+CQ++H K G V+N L+ Y C +
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLG-TLLIPSVTNALLSCYVCCASSPLVKSSQLMA 201
Query: 244 SALKLF-----------------------EDISVERKNL--------VSWTSIISGFAMH 272
SA K+F +D+ R+ L V+W ++ISG+
Sbjct: 202 SARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
G+ + A + F RM +G++ + T+ S+++AC
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC 293
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 213/419 (50%), Gaps = 62/419 (14%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH----SPLRPLFDSFTYSFLIRTCV 79
T +N+++ +S + SP QLQ I ++H S RP D++T+SFL++ C
Sbjct: 462 QTPAWNSMIRGFSQSPSPL-------QLQAIVFYNHMLSASHARP--DTYTFSFLLKACE 512
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
++H I + G+ V + T L+ Y G ++ + K+F+E+P R+LV+WN
Sbjct: 513 EAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNS 572
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
MI+ + G E A ++++M NV DG+ T++++L +
Sbjct: 573 MISCYCQTGLHEEALKMYDQMRISNVG-----FDGF----------------TLVSLLSS 611
Query: 200 IWQNGAVRNCQLIHGY-GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
GA+ +H + GE+R +I V N LID YAKCG + SAL +F S+ +++
Sbjct: 612 CAHVGALHMGVQMHRFAGERRLVE--NIFVGNALIDMYAKCGSLASALSIFN--SMPKRD 667
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+ +W S+I G+ +HG G A+ F M G++PN +TFL +L CSH GL
Sbjct: 668 VFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFH 727
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HYGC+VD+ GRAG+L++A ++ PS+ D V+ R LLG+C H N
Sbjct: 728 MMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQ-HDPVLWRTLLGSCKIHRN 786
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VE+GE R ++++ GD VL+ I A R+R+++ R PG S +
Sbjct: 787 VEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 845
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS-------------NGASTEPSEITIL 194
G L YA+ +F + +W ++ G+++ + + P T
Sbjct: 446 GSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFS 505
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+L A + C+ +HG+ + G++ D+ + LI +YA G I +A K+FE++
Sbjct: 506 FLLKACEEAKEEGKCREVHGFIIRFGYDQ-DVVLCTNLIRSYAGNGLIETAHKVFEEMPA 564
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGC 313
++LVSW S+IS + G+ + A++ +++M+ + + T +S+L++C+H G LH G
Sbjct: 565 --RDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG- 621
Query: 314 LVDMLGRAGRLEQAEKIALG 333
V M AG E I +G
Sbjct: 622 -VQMHRFAGERRLVENIFVG 640
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 215/427 (50%), Gaps = 64/427 (14%)
Query: 20 SLLHH------TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSF 73
SLL H T+ +N ++ YS +DSP++A L+ ++++ +RP ++ T+ F
Sbjct: 85 SLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRR------RGVRP--NNLTFPF 136
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C TL+ G Q HA+ K G VYV L+N Y S + + K+FDE+ ER
Sbjct: 137 LLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERT 196
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
LV+WN +IT V+ F+E +D + +M EP E T+
Sbjct: 197 LVSWNAVITACVE-------NFCFDEA-----------IDYFLKMGNHG---FEPDETTM 235
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ +L A + G + + +H RG ++++ +D YAK G + A +F
Sbjct: 236 VVILSACAELGNLSLGRWVHSQVVGRGM-VLNVQLGTAFVDMYAKSGDVGCARHVFN--C 292
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+++K++ +W+++I G A HG A+E F M + PN VTF+ VL ACSH GL
Sbjct: 293 LKQKSVWTWSAMILGLAQHGFANEAIELFTNMTSSPIVPNHVTFIGVLCACSHAGLVDKS 352
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYG +VD+LGRAG++++A ++ + +P E D +V R LL AC
Sbjct: 353 YHYFNLMERVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPVE-PDPIVWRTLLSAC 411
Query: 352 S---FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
S +G E+ E +++LE+E GG+ V++ N A +G + A RR M +R K
Sbjct: 412 SGRDVNGGAEVAEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKK 471
Query: 409 FPGRSLV 415
G S +
Sbjct: 472 MAGESCI 478
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 216/401 (53%), Gaps = 40/401 (9%)
Query: 48 YKQLQQIYTHS-HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106
Y + Q+Y+ H + P D++ + +++ C + G ++H+ K+GF S+ V
Sbjct: 128 YLEAIQLYSRMLHESILP--DNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVR 185
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
++ +Y G L D+ ++F+E+PE ++V VMI+ G +E A ++F + ++ V
Sbjct: 186 LRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTV 244
Query: 167 SWTGILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
WT ++DG+ R +N G + P+E TI+ VL A Q GA+ + +H Y
Sbjct: 245 CWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM 304
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
K ++ V N LI+ Y++CG I A +F+++ + ++++++ ++ISG +M+G +
Sbjct: 305 RKFEIE-LNLFVGNALINMYSRCGSIDEAQTVFDEM--KDRDVITYNTMISGLSMNGKSR 361
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A+E F M L+P VTF+ VLNACSHGGL HYGC+
Sbjct: 362 QAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCM 421
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+LGR GRLE+A + + D ++ LL AC H N+E+GE+V +++ + + +
Sbjct: 422 VDLLGRVGRLEEAYDLIRTMKM-TPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD 480
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G YVL+ ++ A G++ +A ++R M E K PG S +
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 69/286 (24%)
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILA 195
K ++YA +F+ NV +T ++DG+ +R S P + +
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 152
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS-- 253
+L A A+R + +H K GF++ + V +++ Y KCG + A ++FE++
Sbjct: 153 ILKACGSQLALREGREVHSRALKLGFSSNRL-VRLRIMELYGKCGELGDARRVFEEMPED 211
Query: 254 --------------------------VERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V RK+ V WT++I GF + A+E F MQ
Sbjct: 212 VVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQG 271
Query: 288 VGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQ 326
++PN T + VL+ACS G L G L++M R G +++
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
A+ + + DV+ ++ S +G +R+ +E+ R
Sbjct: 332 AQTVFDEMKDR--DVITYNTMISGLSMNGK-------SRQAIELFR 368
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 36/182 (19%)
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
QLI + F F+ L+ + +KC I A ++F+ N+ +T++I GF
Sbjct: 71 QLIRNGHSQDPFMVFE------LLRSCSKCHAIDYASRIFQ--YTHNPNVYLYTALIDGF 122
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SHGGLHYG---------------- 312
G A++ + RM + P+ S+L AC S L G
Sbjct: 123 VSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNR 182
Query: 313 ----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG----ERVT 364
++++ G+ G L A ++ +P DVV +++ + S G VE RV
Sbjct: 183 LVRLRIMELYGKCGELGDARRVFEEMPE---DVVASTVMISSYSDQGLVEEAGAVFSRVR 239
Query: 365 RK 366
RK
Sbjct: 240 RK 241
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 207/416 (49%), Gaps = 65/416 (15%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
YS +A L++Q+ I++ S L + T ++ C +L + GT++HA
Sbjct: 383 YSQRGCSHEALNLFRQM--IFSGS------LPNCVTIISVLSACASLGAFSQGTEIHAYS 434
Query: 95 SKV----------GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP--ERNLVTWNVMIT 142
K G + V AL++MY K + +FD++P ERN+VTW VMI
Sbjct: 435 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 494
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G ++G+ A LF EM I + Y P+ TI +L A
Sbjct: 495 GHAQYGDSNDALKLFVEM----------ISEPY---------GVAPNAYTISCILMACAH 535
Query: 203 NGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A+R + IH Y + + + V+NCLID Y+KCG + +A +F+ +S +K+ +S
Sbjct: 536 LAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS--QKSAIS 593
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
WTS+++G+ MHG G A++ F++M+K G P+ +TFL VL ACSH G+
Sbjct: 594 WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMS 653
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C +D+L R+GRL++A + +P E T VV LL AC H NVE+
Sbjct: 654 ADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT-AVVWVALLSACRVHSNVEL 712
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E K++EM N G Y L+ NI A GR+ D R+R +M + K PG S V
Sbjct: 713 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 768
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 28/256 (10%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP D FT +++ C L G+ H +I GF+S+V++ ALV MY G L+++
Sbjct: 159 RP--DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216
Query: 123 SKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
S +FDE+ +R ++++WN +++ VK A LF +M T I+
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKM--------TLIVHEKPTNE 268
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
RS+ I+I+ +LPA AV + +HG + G D+ V N LID YAKC
Sbjct: 269 RSD-------IISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAYAKC 320
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + +A+K+F +E K++VSW ++++G++ G +AA E F+ M+K + + VT+ +
Sbjct: 321 GLMENAVKVFN--MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTA 378
Query: 300 VL-----NACSHGGLH 310
V+ CSH L+
Sbjct: 379 VIAGYSQRGCSHEALN 394
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 212/420 (50%), Gaps = 45/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ TL+ + + K+A LY Q+ RP F S ++ C +L G
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLA------DGCRPNISCF--SSVLGACASLQDLRSG 397
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H K+ ++V+V++AL++MY L D+ +F LP++N+V WN +I+G
Sbjct: 398 RKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNN 457
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITILAV 196
++ A LF++MP RNV SW I+ GY + NR + P EIT +V
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQ-NRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A ++ +++H K G I V L D YAK G + S+ ++F ++ +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKE-SIFVGTALSDMYAKSGDLDSSKRVFYEMP--K 573
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+N V+WT++I G A +G + ++ FE M G+ PN TFL++L ACSH GL
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHY 633
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG L +AE + L I S+ ++ LL AC+ +
Sbjct: 634 FEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESK-SEANSWAALLSACNIYR 692
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N EMGER +++ E+++ N YVL+ N+ A G++ DA +R +M N K G S V
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 171/403 (42%), Gaps = 64/403 (15%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
F ++ + L + PK A ++ ++ + SP + T +I+ C+ +L
Sbjct: 212 FFTAMIAGFVLNELPKDALGVF---HEMLSCGVSP-----NEITLVSVIKACIGAGEFDL 263
Query: 87 GTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ + K ++ V +L+ +Y+ G + ++FDE+ R++V+W ++
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILA 195
+ G+LE AR + +EMP RN VSW ++ + + + A + P+ +
Sbjct: 324 ELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--- 252
VL A +R+ + IH K + ++ VS+ LID Y KC + A +F +
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSN-NVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442
Query: 253 --------------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ +N+ SW SIISG+A + A+++F M
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502
Query: 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G P +TF SVL AC+ C ++M G++ A+ I LGI I V
Sbjct: 503 ASGQSPGEITFSSVLLACAS-----LCSLEM----GKMVHAKIIKLGIKESI---FVGTA 550
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
L + G+++ +RV EM + N + M LA G
Sbjct: 551 LSDMYAKSGDLDSSKRV---FYEMPKRNDVAWTAMIQGLAENG 590
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 68/322 (21%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V +V G + + +LFD +PER++V++ M+ L+K G + A L+ + P +V +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPA------------------- 199
T ++ G+ A P+EIT+++V+ A
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 200 ---IWQNGAVRNCQLIHGY-------GEKRGFNAFDIR--VS-NCLIDTYAKCGCIFSAL 246
+ +N VRN LI Y +R F+ ++R VS L+D YA+ G + A
Sbjct: 274 SNLLDKNLGVRN-SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGAR 332
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS- 305
++ +++ +N VSW ++++ G K AV + +M G +PN F SVL AC+
Sbjct: 333 RVLDEMP--ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 306 -----------HGGLHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
+ L C L+DM + +L A+ I +P + ++V
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK--NIVCWN 448
Query: 346 ILLGACSFHGNVEMGERVTRKV 367
L+ S + + E + +K+
Sbjct: 449 SLISGYSNNSKMVEAEELFKKM 470
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 80/268 (29%)
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
++ M+ VK G++ AR LF+ MP R+VVS YT M
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVS-------YTTM----------------- 185
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
+ A+ + G+VR+ ++ Y +C ++ F
Sbjct: 186 -VDALMKRGSVRDA-----------------------VELYRQCP--LCSVPFF------ 213
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315
T++I+GF ++ + K A+ F M G+ PN +T +SV+ AC G + +
Sbjct: 214 -------TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG-EFDLAM 265
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
++G A + +K LG+ + + + +R+ G+ + R+ EME +
Sbjct: 266 SIVGLAMKSNLLDK-NLGVRNSLITLYLRK---------GDADAARRMFD---EMEVRDV 312
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDE 403
+ + ++ A +G D E RRV+DE
Sbjct: 313 VSWTALLDVYAELG---DLEGARRVLDE 337
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 208/411 (50%), Gaps = 42/411 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ Y+ + ++A LL+ ++++ L +S T + ++ CV +
Sbjct: 367 LWNAMITGYAQNEYDEEALLLFIEMEE-------SAGLLANSTTMAGVVPACVRSGAFSK 419
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
+H + K G +V AL++MY LG + + ++F ++ +R+LVTWN +ITG V
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
E A + +M IL+ R++ S +P+ IT++ +LP+ A+
Sbjct: 480 SERHEDALLMLHKMQ---------ILERKAS-ERASRVSLKPNSITLMTILPSCAALSAL 529
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y K A D+ V + L+D YAKCGC+ + K+F+ I + +N+++W I+
Sbjct: 530 AKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPI--RNVITWNVIV 586
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+ MHG + A++ M G+KPN VTF+SV ACSH G+
Sbjct: 587 MAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGV 646
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HY C+VD+LGRAGR+++A ++ IP LLGAC H N+E+GE
Sbjct: 647 EPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAA 706
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++++E YVL+ NI + G + A +RR M + K PG S +
Sbjct: 707 QNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWI 757
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 148/325 (45%), Gaps = 58/325 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT S ++ C L G +LHA K G + +V +ALV+MY + + ++
Sbjct: 297 DGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRV 356
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + +R + WN MITG + E A LF EM G+L T
Sbjct: 357 FDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEME-----ESAGLLANST--------- 402
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+ V+PA ++GA + IHG+ KRG + D V N L+D Y++ G I A
Sbjct: 403 ------TMAGVVPACVRSGAFSKKEAIHGFVVKRGLDR-DRFVQNALMDMYSRLGKIDIA 455
Query: 246 LKLFEDISVERKNLVSWTSIISGFA-----------MHGMGKAAVENFERMQKVGLKPNR 294
++F + E ++LV+W +II+G+ +H M + ER +V LKPN
Sbjct: 456 KRIFGKM--EDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNS 513
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+T +++L +C+ L G LVDM + G L+ + K+
Sbjct: 514 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 573
Query: 334 IPSEITDVVVRRILLGACSFHGNVE 358
IP I +V+ +++ A HGN +
Sbjct: 574 IP--IRNVITWNVIVMAYGMHGNSQ 596
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 33/246 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKL 125
D+F + L++ L +LG Q+HA + K G+ V V LVN+Y G K+
Sbjct: 92 DNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 151
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + ERN V+WN +I+ L + + E A F M +V
Sbjct: 152 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDV-------------------- 191
Query: 186 TEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCG 240
EPS T+++V A G + Q +H YG ++G N+F I N L+ Y K G
Sbjct: 192 -EPSSFTLVSVALACSNFPMPEGLLMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKMG 246
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ L S E ++LV+W +++S + A+E M G++P+ T SV
Sbjct: 247 KLASSKVLLG--SFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSV 304
Query: 301 LNACSH 306
L ACSH
Sbjct: 305 LPACSH 310
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 121/288 (42%), Gaps = 49/288 (17%)
Query: 68 SFTYSFLIRTCVTLSYPN---LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
SFT + C P +G Q+HA + G + +NT LV MY +G L S
Sbjct: 195 SFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINT-LVAMYGKMGKLASSKV 253
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
L R+LVTWN +++ L + + A EM +L+G
Sbjct: 254 LLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREM----------VLEG---------- 293
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP TI +VLPA +R + +H Y K G + V + L+D Y C + S
Sbjct: 294 -VEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 352
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNA 303
++F+ + + L W ++I+G+A + + A+ F M++ GL N T V+ A
Sbjct: 353 GCRVFDGMFDRKIGL--WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA 410
Query: 304 CSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKI 330
C G +H L+DM R G+++ A++I
Sbjct: 411 CVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRI 458
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 194/375 (51%), Gaps = 53/375 (14%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT + + + N G +H K+G+ S V V+ +L++MY ++D+ ++F+
Sbjct: 238 FTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 297
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM-NRSNGASTE 187
+ E+++ +WN +++ V G DG R+ +R GA +
Sbjct: 298 MREKDIFSWNSIVS----------------------VHEQCGDHDGTLRLLDRMLGAGIQ 335
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYG-----EKRGFNAFDIRVSNCLIDTYAKCGCI 242
P +T+ VLPA A+ + + IHGY K G + D+ + N +ID YAKCG +
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +FE +S K++ SW +I G+ MHG G A+E F RM +V LKP+ VTF+ VL+
Sbjct: 396 RDAHLVFERMS--NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 453
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH G HY C++DMLGRAG+L++A ++AL +P E +
Sbjct: 454 ACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-AN 512
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
VV R LL AC H + + E ++V E+E + G YVLM N+ VGRY + +R
Sbjct: 513 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHT 572
Query: 401 MDERNALKFPGRSLV 415
M ++N K PG S +
Sbjct: 573 MRQQNVRKTPGCSWI 587
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 42/303 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN ++ + P++ F Y++++ + + P D FT+ I+ C+ +
Sbjct: 107 FNAIISGFITNGFPEEGFEFYQKMR------NEGVMP--DKFTFPCAIKACLDVLEIK-- 156
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H ++ K G + V++ +ALVN Y+ G ++ + F+ELP R++V WN M+ G +
Sbjct: 157 -KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ E +L+ + RMN S PS T+ L G +
Sbjct: 216 GQFEM------------------VLETFRRMNDE---SVVPSRFTVTGXLSVFAVMGDLN 254
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
N ++IHG+ K G+++ + VSN LID Y KC CI AL++FE + K++ SW SI+S
Sbjct: 255 NGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMREKDIFSWNSIVS 311
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------CLVDMLGR 320
G + +RM G++P+ VT +VL ACSH L +G +V LG+
Sbjct: 312 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 371
Query: 321 AGR 323
G+
Sbjct: 372 DGK 374
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA--VISKVGFQ----SHVYVNTALVNMYVSLGFLK 120
D T + ++ C L+ G ++H ++S +G V + A+++MY G ++
Sbjct: 337 DLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMR 396
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+ +F+ + +++ +WN+MI G G A +F M C
Sbjct: 397 DAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRM-CE----------------- 438
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+P E+T + VL A G V + + + A I C+ID + G
Sbjct: 439 ---VQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAG 495
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
+ A +L + +E N V W ++++ +H
Sbjct: 496 QLDEAYELALTMPIE-ANPVVWRALLAACRLH 526
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
+ LK E+ N+ ++ +IISGF +G + E +++M+ G+ P++ TF + A
Sbjct: 89 NTLKAGENDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKA 148
Query: 304 C 304
C
Sbjct: 149 C 149
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 195/356 (54%), Gaps = 36/356 (10%)
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
+ K+ ++ V NT ++ Y L ++ KLF+++PER L +WN MITG ++ G+LE
Sbjct: 244 LFDKMPVRNVVSWNTMIIG-YAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLER 302
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLPAIW 201
A F +M +NVV+WT ++ G+ + RS A + +P+E T ++VL A
Sbjct: 303 AVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 362
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+ A+ Q IH K + VS LI+ Y+KCG + A K+F+D S+ +++VS
Sbjct: 363 KLAALCEGQQIHQIISKTVYQEVADVVS-ALINMYSKCGELELARKIFDDGSIGHRDVVS 421
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W +I+ +A HG G A+ F+ MQ +G +P+ VT++++L+ACSH GL
Sbjct: 422 WNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLV 481
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
H+ CLVD+ GRAGRL++A G+ + + V LL C+ HG++++
Sbjct: 482 RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPS-ASVWAALLAGCNVHGHIDL 540
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G+ K+LE E N G Y+++ NI A G++ +A +R M ++ K PG S +
Sbjct: 541 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWI 596
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 140/304 (46%), Gaps = 56/304 (18%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
TALV+ YV ++++ +LFD +P +N+++WN MI G + G ++ A LFE+MP RNVV
Sbjct: 133 TALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVV 192
Query: 167 SWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVRNCQL--------- 211
SW ++ + + R + A E I+ ++ + +NG + + +L
Sbjct: 193 SWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRN 252
Query: 212 -------IHGYGE----KRGFNAF------DIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
I GY + F F ++ N +I + + G + A+ F +S
Sbjct: 253 VVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMS- 311
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSH-GGLHYG 312
KN+V+WT++ISG G + A++ F MQ +KPN TF+SVL ACS L G
Sbjct: 312 -NKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG 370
Query: 313 --------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
L++M + G LE A KI DVV ++ A +
Sbjct: 371 QQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYA 430
Query: 353 FHGN 356
HG+
Sbjct: 431 HHGH 434
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 39/189 (20%)
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
S+V + L+ G + ++ ++F+E+P+R++V+W +ITG +K G +E A++LF+
Sbjct: 64 SNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRN 123
Query: 161 PC-RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
+NVV+WT ++ GY R NR A +R
Sbjct: 124 DAIKNVVTWTALVSGYVRWNRIEEA---------------------------------RR 150
Query: 220 GFNAFDIR---VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
F+A ++ N +I+ YA+ G I AL LFE + +N+VSW ++I+ F
Sbjct: 151 LFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMP--ERNVVSWNTVITAFMQRRRVD 208
Query: 277 AAVENFERM 285
A E F RM
Sbjct: 209 EAQELFNRM 217
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 29/219 (13%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE- 128
T+ ++ C L+ G Q+H +ISK +Q V +AL+NMY G L+ + K+FD+
Sbjct: 353 TFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDG 412
Query: 129 -LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ R++V+WN MI G A SLF+EM
Sbjct: 413 SIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEM---------------------QALGFR 451
Query: 188 PSEITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P +T +A+L A G V +L R + + CL+D + + G + A
Sbjct: 452 PDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFT-CLVDLFGRAGRLQEAF 510
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENF 282
+ + V+ V W ++++G +HG +GK E
Sbjct: 511 DFIKGLEVKPSASV-WAALLAGCNVHGHIDLGKLTAEKL 548
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 188/346 (54%), Gaps = 43/346 (12%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
T +V+ Y ++ + ++F+ +P+RN W+ MI+G K G ++ ARS+F+ +P RN+V
Sbjct: 228 TVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLV 287
Query: 167 SWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
+W ++ GY + S A EP E+TI +VL A Q G + + IH
Sbjct: 288 NWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMM 347
Query: 217 EKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+G N F V N L+D YAKCG + +A +FE ++ +N W S+ISGFA+HG
Sbjct: 348 NHKGIKLNQF---VLNGLVDMYAKCGDLANARLIFEGMA--HRNRACWNSMISGFAIHGQ 402
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGC 313
K A+E F RM+ P+ +TFLSVL+AC+HGG HYGC
Sbjct: 403 SKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGC 462
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-- 371
L+D+LGRAGR+++A + +P + DVV LLGAC H ++EM +RV ++++++
Sbjct: 463 LIDLLGRAGRIKEAYDLIKRMPVKPNDVVW-GALLGACRVHLDMEMADRVVEEIVKVDSN 521
Query: 372 --RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G YVL+ NI A R+ AE++R M + K G S +
Sbjct: 522 ISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSI 567
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 161/331 (48%), Gaps = 41/331 (12%)
Query: 31 LLHFYSLADSPKKAFLLYKQLQQ--IYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
L+ Y +P++A L+Y L++ +Y +PL +++ C +LS G
Sbjct: 66 LIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPL-----------VLKACASLSIVKHGK 114
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
LHA K G V + T+LV MY G + DS K+FD +PERN VTWN MI G + G
Sbjct: 115 ALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNG 174
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----STEPSEITILAVLPAIWQNG 204
+ + A LFE+M R V+W ++DG+ R + A PSE+ + V + +G
Sbjct: 175 DSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNV-VTWTVMVDG 233
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
RN ++ G + + +I Y K G + A +F+ I V +NLV+W S
Sbjct: 234 YARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPV--RNLVNWNS 291
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------HYG 312
+ISG+A +G + A+E F +MQ G +P+ VT SVL+ACS GL H G
Sbjct: 292 LISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKG 351
Query: 313 C---------LVDMLGRAGRLEQAEKIALGI 334
LVDM + G L A I G+
Sbjct: 352 IKLNQFVLNGLVDMYAKCGDLANARLIFEGM 382
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 129/305 (42%), Gaps = 42/305 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ Y+ ++A + ++Q P D T + ++ C L + G
Sbjct: 289 WNSLISGYAQNGFSEEALEAFGKMQ---AEGFEP-----DEVTIASVLSACSQLGLLDAG 340
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H +++ G + + +V LV+MY G L ++ +F+ + RN WN MI+G
Sbjct: 341 KKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIH 400
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ + A L+ + RM S+ P EIT L+VL A G V
Sbjct: 401 GQSKEA------------------LEFFGRMEDSHEG---PDEITFLSVLSACAHGGFVN 439
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
I EK G I+ CLID + G I A L + + V + N V W +++
Sbjct: 440 AGLEIFSRMEKYGLTT-GIKHYGCLIDLLGRAGRIKEAYDLIKRMPV-KPNDVVWGALLG 497
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327
+H + A E + KV ++ + C HY L ++ + R E+A
Sbjct: 498 ACRVHLDMEMADRVVEEIVKVD--------SNISSGCDS---HYVLLSNIYAASDRWEKA 546
Query: 328 EKIAL 332
EK+ +
Sbjct: 547 EKMRM 551
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 38/230 (16%)
Query: 191 ITILAVLPAIWQNGA----VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ +L V P + + A V++ + +H K G + FD+ + L+ YAKCG + +
Sbjct: 91 VYLLGVAPLVLKACASLSIVKHGKALHAESIKNGVD-FDVMIGTSLVCMYAKCGNVVDSR 149
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
K+F+ + +N V+W ++I G+ +G K+AV FE+M VT++
Sbjct: 150 KVFD--YMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSI----RTAVTWIE------- 196
Query: 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
++D R+G E A + +PSE+ +VV +++ + N EM R+
Sbjct: 197 -------MIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDG--YARNAEM--EAARE 245
Query: 367 VLE-MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V E M + N + ++++G + + + R + D + P R+LV
Sbjct: 246 VFEGMPQRN---FFAWSSMISGYCKKGNVKEARSIFD-----RIPVRNLV 287
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 216/485 (44%), Gaps = 108/485 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
LL NTLL Y+L P A ++ + PLR D+FTYSFLI+ T
Sbjct: 172 ALLANTLLRAYALNSLPHAALAVFVDM---------PLR-QRDTFTYSFLIKALATAGVT 221
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK-------------------- 124
+ H + K+G +V AL++ Y L D+ K
Sbjct: 222 PVRAA-HTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAM 280
Query: 125 -----------LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
+FDE+PE++ V+WN M+ G K GE E A LF+ MP RNVVSW+ ++
Sbjct: 281 VRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVS 340
Query: 174 GY-------------TRMNRSN----------------------------GASTEPSEIT 192
Y +M N A+ E +
Sbjct: 341 AYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVA 400
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
++++L A ++G + + IH + +R + V N L+D + KCGC+ A +F D
Sbjct: 401 VVSILAACAESGCLALGKRIHRHVRQRKLGRSTL-VCNALMDMFCKCGCVNRADYIF-DT 458
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+ K+ VSW II GFAMHG G+ A+ F +M++ G P+ VT ++VL+AC+H GL
Sbjct: 459 EIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEE 518
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC+VD+LGR G +++A + +P E +V+ LL A
Sbjct: 519 GRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGS-LLSA 577
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
C H NVE E ++ ++ N G+Y ++ NI A G++ D + R M + K
Sbjct: 578 CRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTA 637
Query: 411 GRSLV 415
G S +
Sbjct: 638 GSSWI 642
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 183/344 (53%), Gaps = 43/344 (12%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
T +++ Y S G ++ + LF+++P+RN W+ MI+G K G ++ AR++F+ +P RN+V
Sbjct: 91 TVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLV 150
Query: 167 SWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
+W ++ GY++ + EP E+T++ VL A Q + + +H
Sbjct: 151 NWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMI 210
Query: 217 EKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+G N F V N L+D YAKCG + A +FE ++ KN W S+ISGFA+HG
Sbjct: 211 CAKGMKLNEF---VVNALVDMYAKCGDLTGARLIFERMT--NKNNACWNSMISGFAVHGK 265
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGC 313
K A+E F RM++ KP+ +TFLSVL+AC HGG HYGC
Sbjct: 266 TKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGC 325
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL----E 369
LVD+LGRAGR++ A + +P + D V LGAC H + +M E+V V
Sbjct: 326 LVDLLGRAGRIQDAYHLIKSMPMKPND-TVWGAFLGACRIHMDNDMVEQVVEDVCTSDSS 384
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
++ GN Y L+ NI AG G + A R+ VM +R K GRS
Sbjct: 385 VDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRS 428
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 19/205 (9%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY G + DS KLF+ +PERN+VTWN MI+G K G+++ A LF++M RN VSW +
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEM 60
Query: 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF------- 224
+DG+ R A +E+ W +I GY K A
Sbjct: 61 IDGFARSGDMVAARRTFNEVPFELKNVVTWT-------VMIDGYASKGEMEAARLLFEDM 113
Query: 225 ---DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
+ V + +I Y K G + A +F+ + V +NLV+W S+I G++ +G + A++
Sbjct: 114 PQRNFFVWSSMISGYCKIGNVKEARAIFDRVPV--RNLVNWNSLICGYSQNGFCEEALDA 171
Query: 282 FERMQKVGLKPNRVTFLSVLNACSH 306
F +MQ G +P+ VT + VL+AC+
Sbjct: 172 FGKMQNEGYEPDEVTVVGVLSACAQ 196
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 42/305 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ YS ++A + ++Q + P D T ++ C LS ++G
Sbjct: 152 WNSLICGYSQNGFCEEALDAFGKMQN---EGYEP-----DEVTVVGVLSACAQLSLLDVG 203
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H +I G + + +V ALV+MY G L + +F+ + +N WN MI+G
Sbjct: 204 KDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVH 263
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ + A L+ + RM SN +P EIT L+VL A G V
Sbjct: 264 GKTKEA------------------LEFFGRMEESN---EKPDEITFLSVLSACVHGGFVE 302
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
I E+ G +A I+ CL+D + G I A L + + ++ + V W + +
Sbjct: 303 VGLEIFSKMERYGLSA-SIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTV-WGAFLG 360
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327
+H M VE + ++ V + V S HY L+++ +G E+A
Sbjct: 361 ACRIH-MDNDMVE--QVVEDVCTSDSSVD--------SGNDPHYALLLNIYAGSGSWEKA 409
Query: 328 EKIAL 332
++++
Sbjct: 410 GRVSM 414
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 20/123 (16%)
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
YAKCG I + KLFE + +N+V+W ++ISG+ +G K+A F++M N V
Sbjct: 2 YAKCGDIPDSRKLFE--YMPERNVVTWNAMISGYGKNGDMKSASVLFDKMST----RNAV 55
Query: 296 TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
+++ ++D R+G + A + +P E+ +VV +++ + G
Sbjct: 56 SWIE--------------MIDGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKG 101
Query: 356 NVE 358
+E
Sbjct: 102 EME 104
>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
Length = 596
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 193/371 (52%), Gaps = 37/371 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT C L +LH + G + V + A+V+ Y G ++D+ +
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV 227
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------- 177
FD++ R+ V+W MI G + L+ A +F+ MP ++ ++WT ++ G+ +
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIAL 287
Query: 178 --MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLI 233
R G P+ +++ L A + G V + +HG+ +R G + F++ + N LI
Sbjct: 288 ELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALI 347
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y+KCG + +A+ +F D +ER +++SW S+++GF+ +G GK ++ FERM K ++P
Sbjct: 348 DMYSKCGDMVAAMAVF-DRMLER-DIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPT 405
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTFL+VL ACSH GL HY +D LGR +LE+A +
Sbjct: 406 YVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIK 465
Query: 333 GIPSEITDVVVRR--ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
G+ S+I LLGAC HGN+E+ E V + ++E N G YV++ NI + G+
Sbjct: 466 GLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQ 525
Query: 391 YVDAERLRRVM 401
+ DA ++R +M
Sbjct: 526 WDDARQVRALM 536
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 49/272 (18%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +HA++ K H ++ LV +Y L S FD+LP +N ++N ++ L
Sbjct: 47 LGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALA 106
Query: 146 KW-GELEYARSLFEEMP--CRNVVSWTGILDGYTR-------------MNRSNGASTEPS 189
+ G L A L + MP RNVVS+ ++ R + R G +
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166
Query: 190 EITILAVLPAIWQNGAVRNC---QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
I V+ A +R+ + +HG G I ++N ++D Y+K G + A
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI-MANAMVDAYSKAGRVEDAR 225
Query: 247 KLFEDISVER-----------------------------KNLVSWTSIISGFAMHGMGKA 277
+F+ +++ ++ ++WT++ISG +G +
Sbjct: 226 GVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEI 285
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
A+E FERM G+ P +S L AC+ GL
Sbjct: 286 ALELFERMTGEGVVPTPFALVSCLGACAKVGL 317
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 207/416 (49%), Gaps = 65/416 (15%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
YS +A L++Q+ I++ S L + T ++ C +L + GT++HA
Sbjct: 376 YSQRGCSHEALNLFRQM--IFSGS------LPNCVTIISVLSACASLGAFSQGTEIHAYS 427
Query: 95 SKV----------GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP--ERNLVTWNVMIT 142
K G + V AL++MY K + +FD++P ERN+VTW VMI
Sbjct: 428 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 487
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G ++G+ A LF EM I + Y P+ TI +L A
Sbjct: 488 GHAQYGDSNDALKLFVEM----------ISEPY---------GVAPNAYTISCILMACAH 528
Query: 203 NGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
A+R + IH Y + + + V+NCLID Y+KCG + +A +F+ +S +K+ +S
Sbjct: 529 LAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS--QKSAIS 586
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
WTS+++G+ MHG G A++ F++M+K G P+ +TFL VL ACSH G+
Sbjct: 587 WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMS 646
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C +D+L R+GRL++A + +P E T VV LL AC H NVE+
Sbjct: 647 ADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT-AVVWVALLSACRVHSNVEL 705
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E K++EM N G Y L+ NI A GR+ D R+R +M + K PG S V
Sbjct: 706 AEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 761
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 28/256 (10%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP D FT +++ C L G+ H +I GF+S+V++ ALV MY G L+++
Sbjct: 152 RP--DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209
Query: 123 SKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
S +FDE+ +R ++++WN +++ VK A LF +M T I+
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKM--------TLIVHEKPTNE 261
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
RS+ I+I+ +LPA AV + +HG + G D+ V N LID YAKC
Sbjct: 262 RSD-------IISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAYAKC 313
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + +A+K+F +E K++VSW ++++G++ G +AA E F+ M+K + + VT+ +
Sbjct: 314 GLMENAVKVFN--MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTA 371
Query: 300 VL-----NACSHGGLH 310
V+ CSH L+
Sbjct: 372 VIAGYSQRGCSHEALN 387
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 195/356 (54%), Gaps = 36/356 (10%)
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
+ K+ ++ V NT ++ Y L ++ KLF+++PER L +WN MITG ++ G+LE
Sbjct: 244 LFDKMPVRNVVSWNTMIIG-YAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLER 302
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAVLPAIW 201
A F +M +NVV+WT ++ G+ + RS A + +P+E T ++VL A
Sbjct: 303 AVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 362
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+ A+ Q IH K + VS LI+ Y+KCG + A K+F+D S+ +++VS
Sbjct: 363 KLAALCEGQQIHQIISKTVYQEVADVVS-ALINMYSKCGELELARKIFDDGSIGHRDVVS 421
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W +I+ +A HG G A+ F+ MQ +G +P+ VT++++L+ACSH GL
Sbjct: 422 WNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLV 481
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
H+ CLVD+ GRAGRL++A G+ + + V LL C+ HG++++
Sbjct: 482 RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPS-ASVWAALLAGCNVHGHIDL 540
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G+ K+LE E N G Y+++ NI A G++ +A +R M ++ K PG S +
Sbjct: 541 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWI 596
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 139/304 (45%), Gaps = 56/304 (18%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
TALV+ YV ++++ +LFD +P +N+++WN MI G + G ++ A LFE MP RNVV
Sbjct: 133 TALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVV 192
Query: 167 SWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVRNCQL--------- 211
SW ++ + + R + A E I+ ++ + +NG + + +L
Sbjct: 193 SWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRN 252
Query: 212 -------IHGYGE----KRGFNAF------DIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
I GY + F F ++ N +I + + G + A+ F +S
Sbjct: 253 VVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMS- 311
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSH-GGLHYG 312
KN+V+WT++ISG G + A++ F MQ +KPN TF+SVL ACS L G
Sbjct: 312 -NKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG 370
Query: 313 --------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
L++M + G LE A KI DVV ++ A +
Sbjct: 371 QQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYA 430
Query: 353 FHGN 356
HG+
Sbjct: 431 HHGH 434
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 39/189 (20%)
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
S+V + L+ G + ++ ++F+E+P+R++V+W +ITG +K G +E A++LF+
Sbjct: 64 SNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRN 123
Query: 161 PC-RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219
+NVV+WT ++ GY R NR A +R
Sbjct: 124 DAIKNVVTWTALVSGYVRWNRIEEA---------------------------------RR 150
Query: 220 GFNAFDIR---VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
F+A ++ N +I+ YA+ G I AL LFE + +N+VSW ++I+ F
Sbjct: 151 LFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMP--ERNVVSWNTVITAFMQRRRVD 208
Query: 277 AAVENFERM 285
A E F RM
Sbjct: 209 EAQELFNRM 217
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 29/219 (13%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE- 128
T+ ++ C L+ G Q+H +ISK +Q V +AL+NMY G L+ + K+FD+
Sbjct: 353 TFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDG 412
Query: 129 -LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ R++V+WN MI G A SLF+EM
Sbjct: 413 SIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEM---------------------QALGFR 451
Query: 188 PSEITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P +T +A+L A G V +L R + + CL+D + + G + A
Sbjct: 452 PDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFT-CLVDLFGRAGRLQEAF 510
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENF 282
+ + V+ V W ++++G +HG +GK E
Sbjct: 511 DFIKGLEVKPSASV-WAALLAGCNVHGHIDLGKLTAEKL 548
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 67/428 (15%)
Query: 23 HHTLLFNTLLHFYSLADSPKK-AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
H + ++NTL+ + S K+ AF+LY+++ + SP D T+ F+++ C +
Sbjct: 169 HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE--RGESSP-----DKHTFPFVLKACAYI 221
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+ G Q+H I K GF VYVN L+++Y S G L + K+FDE+PER+LV+WN MI
Sbjct: 222 FGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 281
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
LV++GE + A LF EM S EP T+ +VL A
Sbjct: 282 DALVRFGEYDSALQLFREMQ----------------------RSFEPDGYTMQSVLSACA 319
Query: 202 QNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G++ H + ++ A D+ V N LI+ Y KCG + A ++F+ +++++L
Sbjct: 320 GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GMQKRDL 377
Query: 260 VSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACSHGGL-------- 309
SW ++I GFA HG + A+ F+RM ++ ++PN VTF+ +L AC+H G
Sbjct: 378 ASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYF 437
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD++ RAG + +A + + +P + D V+ R LL AC G
Sbjct: 438 DMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRSLLDACCKKG 496
Query: 356 -NVEMGERVTRKVL----EMERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
+VE+ E + R ++ + E NG G YVL+ + A R+ D +R++M E
Sbjct: 497 ASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIR 556
Query: 408 KFPGRSLV 415
K PG S +
Sbjct: 557 KEPGCSSI 564
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 217/423 (51%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + K+A L+K++ + + +RP D T ++ C LG
Sbjct: 234 WNAMISGYAETGNYKEALELFKEMMK------TNIRP--DESTMVTVVSACAQSGSIELG 285
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I GF S++ + +L+++Y K
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYS-------------------------------KC 314
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GELE A LFE + ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 315 GELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSIL 374
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y +KR NA +R S LID YAKCG I +A ++F S+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTS--LIDMYAKCGDIEAAHQVFN--SI 430
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L SW ++I GFAMHG AA + F RM+K+G++P+ +TF+ +L+ACS G+
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGR 490
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G ++AE++ + E D V+ LL AC
Sbjct: 491 HIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEME-PDGVIWCSLLKACK 549
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
GNVE+GE + ++++E N G YVL+ NI A GR+ + ++R +++++ K PG
Sbjct: 550 IRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGC 609
Query: 413 SLV 415
S +
Sbjct: 610 SSI 612
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 215/449 (47%), Gaps = 87/449 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + L L +S+T+ FL+++C
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMIS--------LGLLPNSYTFPFLLKSCAKSKAFK 151
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G+ ++V+T+L+++YV G L+D+ K+FD P R++V++ +I G
Sbjct: 152 EGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYA 211
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G +E A+ LF+E+P ++VVSW ++ GY A + P E T++
Sbjct: 212 SRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVT 271
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q+G++ + +H + + GF + ++++ N L+D Y+KCG + +A LFE +
Sbjct: 272 VVSACAQSGSIELGRQVHSWIDDHGFGS-NLKIVNSLMDLYSKCGELETACGLFEGLLY- 329
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K+++SW ++I G+ + K A+ F+ M + G +PN VT LS+L AC+H G + G
Sbjct: 330 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRW 388
Query: 313 --------------------CLVDMLGRAGRLEQAEKI---------------------- 330
L+DM + G +E A ++
Sbjct: 389 IHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448
Query: 331 --------------ALGI-PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
+GI P +IT V LL ACS G +++G + R + + +
Sbjct: 449 GRADAAFDIFSRMRKIGIEPDDITFVG----LLSACSRSGMLDLGRHIFRTMTQDYKITP 504
Query: 376 G--DYVLMYNILAGVGRYVDAERLRRVMD 402
Y M ++L G + +AE + M+
Sbjct: 505 KLEHYGCMIDLLGHSGLFKEAEEMINNME 533
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A+ +FE +++ NL+ W ++ G A+ +A++ + M +GL PN TF +L +C
Sbjct: 87 AISVFE--TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSC 144
Query: 305 S-----------HGGLH----------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+ HG + + L+ + + GRLE A K+ P DVV
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR--DVVS 202
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ + G +E +++ E+ + + M + A G Y +A L + M +
Sbjct: 203 YTALIKGYASRGYIESAQKLFD---EIPVKDVVSWNAMISGYAETGNYKEALELFKEMMK 259
Query: 404 RN 405
N
Sbjct: 260 TN 261
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 67/428 (15%)
Query: 23 HHTLLFNTLLHFYSLADSPKK-AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
H + ++NTL+ + S K+ AF+LY+++ + SP D T+ F+++ C +
Sbjct: 89 HSSFMWNTLIRACAHDVSRKEEAFMLYRKM--LERGESSP-----DKHTFPFVLKACAYI 141
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+ G Q+H I K GF VYVN L+++Y S G L + K+FDE+PER+LV+WN MI
Sbjct: 142 FGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 201
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
LV++GE + A LF EM S EP T+ +VL A
Sbjct: 202 DALVRFGEYDSALQLFREMQ----------------------RSFEPDGYTMQSVLSACA 239
Query: 202 QNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G++ H + ++ A D+ V N LI+ Y KCG + A ++F+ +++++L
Sbjct: 240 GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GMQKRDL 297
Query: 260 VSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACSHGGL-------- 309
SW ++I GFA HG + A+ F+RM ++ ++PN VTF+ +L AC+H G
Sbjct: 298 ASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYF 357
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD++ RAG + +A + + +P + D V+ R LL AC G
Sbjct: 358 DMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRSLLDACCKKG 416
Query: 356 -NVEMGERVTRKVL----EMERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
+VE+ E + R ++ + E NG G YVL+ + A R+ D +R++M E
Sbjct: 417 ASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIR 476
Query: 408 KFPGRSLV 415
K PG S +
Sbjct: 477 KEPGCSSI 484
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 192/378 (50%), Gaps = 37/378 (9%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+S ++ ++ G +H ++K+GF+ V+V+++L++MY G KD LFD +
Sbjct: 319 FSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTIL 378
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
E+N+V+WN M+ G G +E A+ LF MP RN VSW+ I+ G+ + + +E
Sbjct: 379 EKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNE 438
Query: 191 ITILAVLP----------AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+ +L +P A ++ + +HG K G D V L D YAK G
Sbjct: 439 MILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQC-DTYVGTALTDMYAKSG 497
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLS 299
I S+ K+F + +KN VSWT++I G A G+ + ++ FE M+K + PN V FL+
Sbjct: 498 DIESSKKVFNRMP--KKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLA 555
Query: 300 VLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE 337
VL ACSH GL H+ C+VDML RAGRL +AE+ +P +
Sbjct: 556 VLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQ 615
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397
+ LL C + N E+ ERV K+ EM N YVL+ NI A GR+ D ++
Sbjct: 616 -PETNAWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKV 674
Query: 398 RRVMDERNALKFPGRSLV 415
R++M + K G S V
Sbjct: 675 RKLMKAKGLKKSGGCSWV 692
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 159/341 (46%), Gaps = 67/341 (19%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
S ++P + T++ ++R C L LG + +I K G++ + V+ +L+ + + +G
Sbjct: 177 ESEVKP--NKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGE 234
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ + ++FD + E+++V+W ++ V+ EL AR +F+EMP RN VSW+ ++ Y +
Sbjct: 235 IHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQS 294
Query: 179 N----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
R +P+ ++L A+ A++ IHG+ K GF D+ V
Sbjct: 295 GYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEK-DVFV 353
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG--------------- 273
S+ LID Y KCG LF+ ++ KN+VSW +++ G++++G
Sbjct: 354 SSSLIDMYCKCGETKDGRFLFD--TILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVR 411
Query: 274 ---------MGKAAVENFERMQKV-------GLKPNRVTFLSVLNACS-----------H 306
G E F+ M +V G PN+ TF S+L AC+ H
Sbjct: 412 NNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLH 471
Query: 307 G---GLHYGC-------LVDMLGRAGRLEQAEKIALGIPSE 337
G L C L DM ++G +E ++K+ +P +
Sbjct: 472 GKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKK 512
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 133/310 (42%), Gaps = 88/310 (28%)
Query: 76 RTCVTLSYPNL--------GTQLHAVISKVGFQSHVYVNTALVNMY-------------- 113
+TCV+L NL G+ LHA + K G S Y++ L+ MY
Sbjct: 22 QTCVSL-LKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISK 80
Query: 114 -----------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSL 156
V G L ++ KLFDE+P+ N ++W +I+G +K+G + +
Sbjct: 81 DFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWY 140
Query: 157 FEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN-----GAVRNCQL 211
FE P +NVVSWT + GY + NG S E ++ I + + N VR C
Sbjct: 141 FERNPFQNVVSWTAAISGYVQ----NGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACAN 196
Query: 212 IHGYG---------EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE------------ 250
+ +G K G+ D+ VSN LI + G I A ++F+
Sbjct: 197 LGDFGLGMSVLGLIVKTGYE-HDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTA 255
Query: 251 --DISVE---------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D+ VE ++N VSW+++I+ + G + ++ F RM + G KPN
Sbjct: 256 ILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPN 315
Query: 294 RVTFLSVLNA 303
F S+L+A
Sbjct: 316 ISCFSSILSA 325
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 37/207 (17%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+S L+ C + + + G LH I K+G Q YV TAL +MY G ++ S K+F+ +
Sbjct: 450 TFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRM 509
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P++N V+W MI GL + G E + +LFEEM +S P+
Sbjct: 510 PKKNEVSWTAMIQGLAESGLAEESLTLFEEM--------------------EKTSSIAPN 549
Query: 190 EITILAVLPAIWQNGAV-------RNCQLIHGYGEK-RGFNAFDIRVSNCLIDTYAKCGC 241
E+ LAVL A +G V + + ++G K R F C++D ++ G
Sbjct: 550 EVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHF--------TCVVDMLSRAGR 601
Query: 242 IFSALKLFEDISVERKNLVSWTSIISG 268
+F A + + + + +W +++SG
Sbjct: 602 LFEAEEFIYSMPFQPET-NAWAALLSG 627
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS------------------------- 253
+ F+ FD+ V NC+I + G + A KLF+++
Sbjct: 80 KDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMW 139
Query: 254 -VER---KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
ER +N+VSWT+ ISG+ +G A++ F ++ + +KPN+VTF SV+ AC++ G
Sbjct: 140 YFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLG- 198
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+G + +LG + G D+ V L+ C G + + V +
Sbjct: 199 DFGLGMSVLGLI--------VKTGYEH---DLAVSNSLITLCLRMGEIHLAREVFDR--- 244
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
ME + + + ++ + +A R+ M +RN + +
Sbjct: 245 MEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSW 284
>gi|334188141|ref|NP_199060.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170829|sp|Q9FIH2.1|PP414_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42450, mitochondrial; Flags: Precursor
gi|9759481|dbj|BAB10486.1| unnamed protein product [Arabidopsis thaliana]
gi|332007429|gb|AED94812.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 199/390 (51%), Gaps = 39/390 (10%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP + FT+ +I + T LG QLH K+G S+V+V +A++N YV L L D
Sbjct: 89 IRP--NEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTD 146
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ + FD+ + N+V+ +I+G +K E E A SLF MP R+VV+W ++ G+++ R+
Sbjct: 147 ARRCFDDTRDPNVVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRN 206
Query: 182 NGASTE-----------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
A P+E T + AI + + IH K F++ V N
Sbjct: 207 EEAVNTFVDMLREGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWN 266
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VG 289
LI Y+KCG + +L F + E++N+VSW S+I G+A +G G+ AV FE+M K
Sbjct: 267 SLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTN 326
Query: 290 LKPNRVTFLSVLNACSHGGL------------------------HYGCLVDMLGRAGRLE 325
L+PN VT L VL AC+H GL HY C+VDML R+GR +
Sbjct: 327 LRPNNVTILGVLFACNHAGLIQEGYMYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFK 386
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+AE++ +P + + + LLG C H N + + K+LE++ + YV++ N
Sbjct: 387 EAEELIKSMPLD-PGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAY 445
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + + + +RR M E +F G S +
Sbjct: 446 SAMENWQNVSLIRRKMKETGLKRFTGCSWI 475
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
++ ++++ K+FDE+PE ++++ +I VK A F+ + C GI
Sbjct: 37 HIDSDLIRNAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLC------LGIR 90
Query: 173 DGYTRMNRSNGASTEPSEITI----------LAVLPAIWQNGAVRNC--QLIHGYGEKRG 220
G+ST ++ + + + ++ AV NC +L +R
Sbjct: 91 PNEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRC 150
Query: 221 FNAFDIRVSNC-----LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
F+ D R N LI Y K AL LF ++ +++V+W ++I GF+ G
Sbjct: 151 FD--DTRDPNVVSITNLISGYLKKHEFEEALSLFR--AMPERSVVTWNAVIGGFSQTGRN 206
Query: 276 KAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLH------YGCLVDMLGR 320
+ AV F M + G+ PN TF + A S+ H + C + LG+
Sbjct: 207 EEAVNTFVDMLREGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGK 258
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 206/387 (53%), Gaps = 37/387 (9%)
Query: 63 RPLFDSFTYSFLIR-TCVTLSYPNLGTQLHAV-ISKVGFQSHVYVNTALVNMYVSLGFLK 120
R +FD + ++ T + + Y ++G + A + + + +V A++ Y+ +G +K
Sbjct: 182 RKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVK 241
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ K FDE+PE+N+V++ MI G K G++ AR+LF++ P R++++W+ ++ GYT+ +
Sbjct: 242 SAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQ 301
Query: 181 SNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
N A + +P + + +++ A Q G + + + Y + + V+
Sbjct: 302 PNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTA 361
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LID AKCG + A+ LFE + +++L+S+ S++ G ++HG G AV FERM L
Sbjct: 362 ALIDMNAKCGNMERAMYLFEKMP--KRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDL 419
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
P+ V F +L ACS GL HY C+VD+L R+GRL++A
Sbjct: 420 TPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAY 479
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
++ +P + + LLGAC + + E+ E V +++E+E N G+YVL+ NI A
Sbjct: 480 ELIKSVPVQ-SHAGAWGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAA 538
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
R++D +R M+ER K PG S +
Sbjct: 539 DRWLDVSAVRNQMNERGLRKIPGCSWI 565
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 169/388 (43%), Gaps = 64/388 (16%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL 62
+SN+V +S + L T L+N+L+ Y LY ++++ +P
Sbjct: 70 ASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKR---EDGAP- 125
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
D +T+ L++ C + G LH I + G +YV T+LVN+Y G + +
Sbjct: 126 ----DRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCA 181
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
K+FD + ERN+V+W MI G G L A+ LF+ MP RNV SW I+ GY +M
Sbjct: 182 RKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKM---- 237
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
G V++ + ++ +F +ID YAK G +
Sbjct: 238 ---------------------GDVKSAEKAFDEMPEKNVVSF-----TTMIDGYAKAGDM 271
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
SA LF+ +++++W+++ISG+ +G AV+ F M +KP++ S++
Sbjct: 272 LSARNLFQ--KAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLML 329
Query: 303 ACSH----------------------GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACS G L+DM + G +E+A + +P D
Sbjct: 330 ACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKR--D 387
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVL 368
++ ++ S HG+ + + ++L
Sbjct: 388 LISYCSVMQGLSIHGHGDQAVSLFERML 415
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
++ S L++ C T + +L Q+HA + + G + ++ T ++ S+ + S+ +FD
Sbjct: 30 YSISALLKLCKT--HIDL-HQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDR 86
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ + WN +++G Y L + I+ Y RM R +GA P
Sbjct: 87 VLSPSTFLWNSLVSG--------YCAKL----------QFVDIISLYVRMKREDGA---P 125
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
T ++L G + +HG + G + DI V+ L++ Y K G I A K+
Sbjct: 126 DRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDE-DIYVTTSLVNLYGKGGLIDCARKV 184
Query: 249 FEDISVERKNLVSWTSIISGFAMHG 273
F+ +S +N+VSWT++I G++ G
Sbjct: 185 FDGMS--ERNVVSWTAMIVGYSSIG 207
>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
Length = 458
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 197/381 (51%), Gaps = 36/381 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+ ++R+ L P G QLHA +K+G S+V+V +AL++ Y +G ++++ +
Sbjct: 40 NEFTFGTVLRSATALRAPRAGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVL 99
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D+ E N+V++ +I GL+K G + A LF MP RNVVSW ++ G ++ S A
Sbjct: 100 DDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVN 159
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P+E T VL ++ GA+ + +H K D+ + N L+ Y
Sbjct: 160 LFLEMCREGVTPNESTFPCVLTSVANAGALGVGRSVHASAIKF-LGKLDVYIGNSLVSFY 218
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
A+CG + ++ F+ ++ RKN+VSW ++I G+A +G G+ A++ + M+ GLKP+ VT
Sbjct: 219 ARCGSLEDSVLAFKKMN--RKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNVT 276
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
L +L C+H GL HY C+VD+L RA R + A++ +
Sbjct: 277 LLGLLFGCNHAGLVDEGYALFKTTEMEQPGILKPEHYACVVDLLSRAKRFDNAKRFLEEL 336
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P E + + L+G C H N E+ E V +++ ++ + Y+L+ N+ + G +
Sbjct: 337 PFE-PGIGFWKALVGGCQIHWNRELAESVAKRIHALDPKDTSSYILLSNVYSASGSWQSV 395
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+RR + E+ + G S +
Sbjct: 396 SMIRREIKEKGLKRITGCSWI 416
>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
Length = 596
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 193/371 (52%), Gaps = 37/371 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT C L +LH + G + V + A+V+ Y G ++D+ +
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV 227
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------- 177
FD++ R+ V+W MI G + L+ A +F+ MP ++ ++WT ++ G+ +
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIAL 287
Query: 178 --MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLI 233
R G P+ +++ L A + G V + +HG+ +R G + F++ + N LI
Sbjct: 288 ELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALI 347
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y+KCG + +A+ +F D +ER +++SW S+++GF+ +G GK ++ FERM K ++P
Sbjct: 348 DMYSKCGDMVAAMAVF-DRMLER-DIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPT 405
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTFL+VL ACSH GL HY +D LGR +LE+A +
Sbjct: 406 YVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIK 465
Query: 333 GIPSEITDVVVRR--ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
G+ S+I LLGAC HGN+E+ E V + ++E N G YV++ NI + G+
Sbjct: 466 GLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQ 525
Query: 391 YVDAERLRRVM 401
+ DA ++R +M
Sbjct: 526 WDDARQVRALM 536
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 49/272 (18%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +HA++ K H ++ LV +Y L S FD+LP +N ++N ++ L
Sbjct: 47 LGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALA 106
Query: 146 KW-GELEYARSLFEEMP--CRNVVSWTGILDGYTR-------------MNRSNGASTEPS 189
+ G L A L + MP RNVVS+ ++ R + R G +
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166
Query: 190 EITILAVLPAIWQNGAVRNC---QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
I V+ A +R+ + +HG G I ++N ++D Y+K G + A
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI-MANAMVDAYSKAGRVEDAR 225
Query: 247 KLFEDISVER-----------------------------KNLVSWTSIISGFAMHGMGKA 277
+F+ +++ ++ ++WT++ISG +G +
Sbjct: 226 GVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEI 285
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
A+E FERM G+ P +S L AC+ GL
Sbjct: 286 ALELFERMTGEGVVPTPFALVSCLGACAKVGL 317
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 201/421 (47%), Gaps = 69/421 (16%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAV-ISKVGFQSHVYVNTALVNMYVSLG 117
S R LFD ++ + +S Y G + A + V+ TA+V+ Y G
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
L+++ ++FD +PERN V+WN M+ ++ ++ A+ LF MPCRNV SW +L GY +
Sbjct: 270 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQ 329
Query: 178 MNRSNGA----STEPSE--ITILAVLPAI---------------------WQNGAVRNCQ 210
A T P + ++ A+L A W N + C
Sbjct: 330 AGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACV 389
Query: 211 L--------------IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L +HG + G+ V N L+ Y KCG + A FE++ E
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGY-GVGCFVGNALLAMYFKCGNMEDARNAFEEM--EE 446
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++VSW ++I+G+A HG GK A+E F+ M+ KP+ +T + VL ACSH GL
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C++D+LGRAGRL +A + +P E D + LLGA H
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE-PDSTMWGALLGASRIH 565
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
N E+G K+ E+E N G YVL+ NI A G++ DA ++R +M+ER K PG S
Sbjct: 566 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625
Query: 415 V 415
+
Sbjct: 626 I 626
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 171/386 (44%), Gaps = 83/386 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT-----CVTLS 82
+NTLLH +++ S A L+ ++ P+ DS TY+ +I + V+L+
Sbjct: 103 YNTLLHALAVSSSLADARGLFDEM------------PVRDSVTYNVMISSHANHGLVSLA 150
Query: 83 --YPNLGTQLHAVI----------------SKVGFQSHVYVN----TALVNMYVSLGFLK 120
Y +L + AV ++ F S + AL++ YV G +
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMS 210
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
++ +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V +WT ++ GY +
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ--- 267
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-------FNAFDIR---VSN 230
NG E V A+ + AV ++ Y ++R FN R N
Sbjct: 268 -NGMLEEARR-----VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWN 321
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G + ++ F M + G
Sbjct: 322 TMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 379
Query: 291 KPNRVTFLSVLNACS-----------HG-----GLHYGCLVD-----MLGRAGRLEQAEK 329
NR F VL+ C+ HG G GC V M + G +E A
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 439
Query: 330 IALGIPSEITDVVVRRILLGACSFHG 355
+ E DVV ++ + HG
Sbjct: 440 AFEEM--EERDVVSWNTMIAGYARHG 463
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---- 163
A++ Y + G L ++ LF +P + ++N ++ L L AR LF+EMP R
Sbjct: 74 AMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT 133
Query: 164 ---------------------------NVVSWTGILDGYTRMNRSNGA------STEPSE 190
+ VSW G+L Y R R A TE
Sbjct: 134 YNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV 193
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
I+ A++ Q G + + + R D+ N ++ YA+ G + A +LF+
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFD 248
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V +++ +WT+++SG+A +GM + A F+ M +
Sbjct: 249 AAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa]
gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 196/380 (51%), Gaps = 34/380 (8%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+ +I + +L NLG Q A K+G V+V +A+++ Y LG ++++ + F
Sbjct: 92 NEFTFGTVIHSSTSLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAF 151
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+++ N+V++ +I G +K G E A LF++MP RN+V+W ++ G+++M ++ A
Sbjct: 152 EDIQHPNIVSYTALIHGYLKKGRFEEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVN 211
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEK-RGFNA--------FDIRVSNCLIDTYA 237
E+ ++P + E R F+A F + V N LI YA
Sbjct: 212 LFVEMIREGLVPCQYTFPCAIIAAANIAALEMGRSFHACAIKTMGEFSVFVGNSLISFYA 271
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCG + +L+LF ++ + +VSW ++I GFA +G G+ AV+ +ERM+ GL+P+ VT
Sbjct: 272 KCGSMEDSLRLFYELP--ERTIVSWNAVICGFAQNGRGENAVDFYERMRNTGLRPDSVTL 329
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
L +L AC+H GL HY C+VD+L R G ++A++ +P
Sbjct: 330 LGLLWACNHAGLVDKGYSYFNRARLEHPSLLKPKHYACMVDLLSRCGCFKEAQEFLRDLP 389
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
V + LLG C H N E+G R +L+++ + Y+++ N + GR+ DA
Sbjct: 390 FN-PGVGFWKALLGGCKIHSNTELGALAGRNILDLDPKDASSYIMLSNAHSAAGRWQDAS 448
Query: 396 RLRRVMDERNALKFPGRSLV 415
+R+ + R + P S +
Sbjct: 449 VIRQEIHARGLKRIPASSWI 468
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 51/233 (21%)
Query: 94 ISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA 153
I V F+S+ ++ + F +++ ++FD +P+ ++V+ +I + + A
Sbjct: 18 IHSVAFKSNHFLAHEYILKPEHCHFSRNALQVFDTIPDLDVVSATTIIGQFARLHQYREA 77
Query: 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIH 213
LF M NV P+E T V+ + G + +
Sbjct: 78 IQLFSRMLFLNVT---------------------PNEFTFGTVIHSSTSLGDLNLGRQFQ 116
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--------------------- 252
K G N + + V + ++D+YAK G I A + FEDI
Sbjct: 117 ACAMKMGLN-YMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTALIHGYLKKGRF 175
Query: 253 --------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
+ +N+V+W ++I GF+ G + AV F M + GL P + TF
Sbjct: 176 EEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYTF 228
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 241 CIFS--ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
C FS AL++F+ ++ ++VS T+II FA + A++ F RM + + PN TF
Sbjct: 40 CHFSRNALQVFD--TIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFLNVTPNEFTFG 97
Query: 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
+V+++ + G D+ GR QA + +G+ V V +L + + G+++
Sbjct: 98 TVIHSSTSLG-------DL--NLGRQFQACAMKMGLNYM---VFVGSAVLDSYAKLGSIQ 145
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
+R +++ N Y + + GR+ +A L + M ERN
Sbjct: 146 EAQRAFE---DIQHPNIVSYTALIHGYLKKGRFEEAFELFKQMPERN 189
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 201/421 (47%), Gaps = 69/421 (16%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAV-ISKVGFQSHVYVNTALVNMYVSLG 117
S R LFD ++ + +S Y G + A + V+ TA+V+ Y G
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
L+++ ++FD +PERN V+WN M+ ++ ++ A+ LF MPCRNV SW +L GY +
Sbjct: 270 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQ 329
Query: 178 MNRSNGA----STEPSE--ITILAVLPAIWQNG--------------------------- 204
A T P + ++ A+L A Q G
Sbjct: 330 AGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACV 389
Query: 205 -------AVRNCQL-IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
A C + +HG + G+ V N L+ Y KCG + A FE++ E
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGY-GVGCFVGNALLAMYFKCGNMEDARNAFEEM--EE 446
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++VSW ++I+G+A HG GK A+E F+ M+ KP+ +T + VL ACSH GL
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C++D+LGRAGRL +A + +P E D + LLGA H
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE-PDSTMWGALLGASRIH 565
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
N E+G K+ E+E N G YVL+ NI A G++ DA ++R +M+ER K PG S
Sbjct: 566 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625
Query: 415 V 415
+
Sbjct: 626 I 626
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 171/386 (44%), Gaps = 83/386 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT-----CVTLS 82
+NTLLH +++ S A L+ ++ P+ DS TY+ +I + V+L+
Sbjct: 103 YNTLLHALAVSSSLADARGLFDEM------------PVRDSVTYNVMISSHANHGLVSLA 150
Query: 83 --YPNLGTQLHAVI----------------SKVGFQSHVYVNT----ALVNMYVSLGFLK 120
Y +L + AV ++ F S + AL++ YV G +
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMS 210
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
++ +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V +WT ++ GY +
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ--- 267
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-------FNAFDIR---VSN 230
NG E V A+ + AV ++ Y ++R FN R N
Sbjct: 268 -NGMLEEARR-----VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWN 321
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G + ++ F M + G
Sbjct: 322 TMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 379
Query: 291 KPNRVTFLSVLNACS-----------HG-----GLHYGCLVD-----MLGRAGRLEQAEK 329
NR F VL+ C+ HG G GC V M + G +E A
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 439
Query: 330 IALGIPSEITDVVVRRILLGACSFHG 355
+ E DVV ++ + HG
Sbjct: 440 AFEEM--EERDVVSWNTMIAGYARHG 463
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---- 163
A++ Y + G L ++ LF +P + ++N ++ L L AR LF+EMP R
Sbjct: 74 AMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT 133
Query: 164 ---------------------------NVVSWTGILDGYTRMNRSNGA------STEPSE 190
+ VSW G+L Y R R A TE
Sbjct: 134 YNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDA 193
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
I+ A++ Q G + + + R D+ N ++ YA+ G + A +LF+
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFD 248
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V +++ +WT+++SG+A +GM + A F+ M +
Sbjct: 249 AAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
gi|223946951|gb|ACN27559.1| unknown [Zea mays]
Length = 616
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 37/378 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT + C + ++H + G + V + A++N Y ++D+ L
Sbjct: 178 MDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHL 237
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD++ R+ VTW MI+G + +L A +F+ MP ++ ++WT ++ G+ + + A
Sbjct: 238 FDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTAL 297
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLI 233
P+ +++ L A + G V + +H + +R G F+I + N L+
Sbjct: 298 ELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALV 357
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y+KCG + +A+ +F+ + ++ +SW S+++GF+ +G+GK ++ FE M G++P
Sbjct: 358 DMYSKCGDMMAAMAVFD--WMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPT 415
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTFL+VL ACSH GL HY +D LGR +LE+A +
Sbjct: 416 HVTFLAVLTACSHSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIK 475
Query: 333 GIPSEITDVVVRR--ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+PS I LLGAC HGN+E+ E V + +E GN G YV+M NI A G+
Sbjct: 476 DLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQ 535
Query: 391 YVDAERLRRVMDERNALK 408
+ DA R+R +M E+ K
Sbjct: 536 WDDARRVRGLMKEKGLKK 553
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 48/272 (17%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+LG +HA + K SH ++ LV +Y SL + K F +LP +N ++N ++ L
Sbjct: 57 HLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAAL 116
Query: 145 VKWGE-LEYARSLFEEMPC--RNVVSWTGILDGY-------------TRMNRSN--GAST 186
++ + L A LF+ MP RN+VS+ ++ R+ R G
Sbjct: 117 LRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGL 176
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
T+++V A GA R + +HG G F + ++N +++ Y+K + A
Sbjct: 177 AMDRFTVVSVATACAGIGAARPLREMHGAVVVSGME-FTVIMANAMLNAYSKARRVEDAR 235
Query: 247 KLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMGKA 277
LF+ +S+ K+ ++WT++ISG +G
Sbjct: 236 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 295
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
A+E FE+M G+ P +S L AC+ GL
Sbjct: 296 ALELFEQMLAKGVSPTPFVLVSALGACAKLGL 327
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 201/389 (51%), Gaps = 46/389 (11%)
Query: 65 LFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS----LGFL 119
LFDS L V +S Y ++G ++A ++ F +T N+ +S G L
Sbjct: 220 LFDSMPVKDLASWNVMVSGYMDIGDCVNA---RIIFGKMPIHDTGSWNIMISGFCKAGEL 276
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-- 177
+ + FD +P +N+++W +M+ G +K G+ AR LF++MP +N+V+W+ ++ GY R
Sbjct: 277 ESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNG 336
Query: 178 --------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ-LIHGYGEKRGFNAFDIRV 228
R +P E IL ++ A Q G + + +IH Y + D+RV
Sbjct: 337 QPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLS--DLRV 394
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
LID YAKCG I AL++FE K+L+ ++++I+ A HG+G+ A+ F++MQ+
Sbjct: 395 FTSLIDMYAKCGSIEKALQMFE--MAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRA 452
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+KP+ VTFL VL AC+HGGL HY C+VD+LGR G LE+
Sbjct: 453 NIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEE 512
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A + +P VV LL AC H NV++ E ++ ++E N G+Y+L+ NI A
Sbjct: 513 AYNLIRNMPIA-PHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYA 571
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ ++R + E K G S +
Sbjct: 572 AAGRWGSVAKVRAKIREHRVRKNRGSSWI 600
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 184/402 (45%), Gaps = 70/402 (17%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+ +L+H Y +AF L+ Q+++ P+ L +FT S +++ L+
Sbjct: 68 LWTSLIHGYVENRQYDEAFSLFIQMRR------EPISVL--NFTISSVLKALARLTRFKG 119
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G ++ + K GF + V +++++++ + + + FDE+ E+++V+WN+MI+G
Sbjct: 120 GQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGN 179
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----STEPSEITILAVLPAIW 201
++ AR F+ MP RNVVSWT ++ GY + A S ++ V+ + +
Sbjct: 180 NDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGY 239
Query: 202 QN-GAVRNCQLIHG-------------------YGEKRGFNAFDIRVSN-------CLID 234
+ G N ++I G GE F R+ N ++D
Sbjct: 240 MDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLD 299
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y K G A LF+ + + KNLV+W+++I G+A +G A+E FER ++ +KP+
Sbjct: 300 GYIKNGDTNGARCLFDQMPM--KNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDE 357
Query: 295 VTFLSVLNACSHGG--------LH-------------YGCLVDMLGRAGRLEQA-EKIAL 332
L +++ACS G +H + L+DM + G +E+A + +
Sbjct: 358 TFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEM 417
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
P D++ ++ A + HG +G +M+R N
Sbjct: 418 AHPK---DLLCYSTMIAALANHG---LGRDAIFLFDKMQRAN 453
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 154/345 (44%), Gaps = 67/345 (19%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDEL 129
+I C TL L ++ +++ +S V +V L+ +Y G + K+FDE+
Sbjct: 8 IIHNCKTLK------SLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEI 61
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+ N W +I G V+ + + A SLF +M EP
Sbjct: 62 TQPNAYLWTSLIHGYVENRQYDEAFSLFIQM------------------------RREPI 97
Query: 190 EI---TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ TI +VL A+ + + Q ++G+ K GF AFD+ V N ++D + +C + +A
Sbjct: 98 SVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGF-AFDLIVQNSVLDLFMRCRKVDTAR 156
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+ F+++ K++VSW +ISG+ + A + F+RM + N V++ S++ C +
Sbjct: 157 QAFDEMC--EKDIVSWNMMISGYGNNDRVDIARKFFDRMP----ERNVVSWTSMI--CGY 208
Query: 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
+AG + +A+ + +P + D+ +++ G +++G+ V +
Sbjct: 209 ------------VKAGDMAEAQVLFDSMP--VKDLASWNVMVS-----GYMDIGDCVNAR 249
Query: 367 VL--EMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
++ +M + G + +M + G A+ M +N + +
Sbjct: 250 IIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISW 294
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 151/493 (30%), Positives = 225/493 (45%), Gaps = 114/493 (23%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L+NTL+ Y+ A ++A LY + + L P D++T+ F++R+C LS
Sbjct: 93 VFLWNTLIRGYADAGPCEEALALYSNMHG------AGLFP--DNYTFPFVVRSCAVLSAL 144
Query: 85 NLGTQLHAVISKVGFQSHVYVN-------------------------------TALVNMY 113
G ++H I K GF S V+V TA++ Y
Sbjct: 145 REGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGY 204
Query: 114 VSLGFLKDSSKLFDEL----PERNLVTW-------------------------------- 137
V + K+ +F E+ + N VT
Sbjct: 205 VQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDV 264
Query: 138 ---NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGA 184
N +I K G +E ARSLF+ M +N+VSW ++ Y + N R
Sbjct: 265 SLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAE 324
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
+ IT+++V+ A GA+ + +H +++G ++ ++N LID YAKCG I
Sbjct: 325 KVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLE-INVSITNALIDMYAKCGNIDL 383
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++FE + +++VSWTS+I A HG G+ A++ F RM+ G+KPN TF +V AC
Sbjct: 384 AREVFERLPC--RSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTAC 441
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
H GL H C+VD+LGRAG L +A + +P E DV
Sbjct: 442 RHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVE-PDVS 500
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
V LLG+C H N+E+ E V K+ ++ YVLM NI A GR+ DA RLR++M+
Sbjct: 501 VWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLME 560
Query: 403 ERNALKFPGRSLV 415
ER K PG SLV
Sbjct: 561 ERELKKIPGHSLV 573
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 151/326 (46%), Gaps = 53/326 (16%)
Query: 40 SPKKAFLLYKQLQQIYTHSHSPLRPLFD------SFTYSFLIRTCVTLSYPNLGTQLHAV 93
SPK L K L I R LFD S ++++L+ C +L P+L +++HA+
Sbjct: 2 SPKSLSTLLKGLAPIK-------RVLFDFRTNYHSRSFNYLLNCCSSL--PDL-SRIHAL 51
Query: 94 ISKVGFQSHVYVNTALVNMYVSLGFLKD-SSKLFDELPERNLVTWNVMITGLVKWGELEY 152
+ G ++ ++T L+ L D + K+FD++P+R++ WN +I G G E
Sbjct: 52 VVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEE 111
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212
A +L+ M +GA P T V+ + A+R + +
Sbjct: 112 ALALYSNM---------------------HGAGLFPDNYTFPFVVRSCAVLSALREGKEV 150
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H K GF++ D+ V + L+ Y++ G +F ++ V +N+VSWT++I+G+ +
Sbjct: 151 HCNIVKHGFDS-DVFVQSSLVAMYSQSGETLGMELVFGEMVV--RNIVSWTAVIAGYVQN 207
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332
K + F M G +PN VT +SVL AC+ GL + L G+L I L
Sbjct: 208 RYFKEGLGVFREMVGSGTQPNAVTLVSVLPACA--GLEFLNL-------GKLIHGYGIKL 258
Query: 333 GIPSEITDVVVRRILLGACSFHGNVE 358
G+ +++ L G C GNVE
Sbjct: 259 GVDPDVSLTNALIALYGKC---GNVE 281
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 39/342 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+++ YV G ++D+ LF+ +P R++VTW +MI G K G + A++LF++MP R+VV+
Sbjct: 242 SMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVA 301
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + NR + + E P E +++ VL AI Q G + +H Y
Sbjct: 302 YNSMMSGYVQ-NRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLY 360
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
++ F ++ LID Y+KCG I A+++FE I E K++ W ++I G A+HG+G
Sbjct: 361 IVEKQF-PLSGKLGVALIDMYSKCGSIQHAMRVFEGI--ESKSIDHWNAMIGGLAVHGLG 417
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A + ++++ +KP+ +TF+ VLNACSH GL HYGC
Sbjct: 418 ESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 477
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+L R+G ++ A + G+P E D V+ R L ACS H E GE V + ++
Sbjct: 478 MVDILARSGSIKLARNLIEGMPIEPND-VIWRTFLTACSHHKEFETGELVAKHLILXGGY 536
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G + D R+R +M E+N K PG S +
Sbjct: 537 NPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWI 578
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 190/395 (48%), Gaps = 57/395 (14%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKA-FLLYKQLQQIYTHSHSPLRPLFDSFT 70
H H ++++ + L+N ++ +S P+KA FLL L+ S P+ D F+
Sbjct: 58 HEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLE-----SSVPV----DKFS 108
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
S ++ C L + GTQ+H + K G S +++ L+ +Y+ GFL + ++FD +P
Sbjct: 109 LSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMP 168
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGAST-- 186
ER+ V++N MI G VK G +E A LF+ MP RN+++W ++ GY + R++G
Sbjct: 169 ERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQ--RADGVDVAE 226
Query: 187 -------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
E I+ +++ ++G + + + + +R D+ +ID Y K
Sbjct: 227 KLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRR-----DVVTWAIMIDGYGKL 281
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFL 298
G + A LF+ + +++V++ S++SG+ + A+E F M+K L P+ + +
Sbjct: 282 GLVHVAKTLFDQMP--HRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLV 339
Query: 299 SVLNACSHGG-------LHYG--------------CLVDMLGRAGRLEQAEKIALGIPSE 337
VL+A + G +H L+DM + G ++ A ++ GI S+
Sbjct: 340 IVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESK 399
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
D ++G + HG +GE + ++ER
Sbjct: 400 SID--HWNAMIGGLAVHG---LGESAFDMLFQIER 429
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
+++ H D + ++ L + +H I + F + AL++M
Sbjct: 320 EVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDM 379
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y G ++ + ++F+ + +++ WN MI GL G E A + ++ R
Sbjct: 380 YSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERR--------- 430
Query: 173 DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
S +P IT + VL A +G V+ L ++ ++ C+
Sbjct: 431 ------------SIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 478
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
+D A+ G I A L E + +E N V W + ++ + H
Sbjct: 479 VDILARSGSIKLARNLIEGMPIE-PNDVIWRTFLTACSHH 517
>gi|302764714|ref|XP_002965778.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
gi|300166592|gb|EFJ33198.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
Length = 440
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 192/390 (49%), Gaps = 45/390 (11%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPL--FDSF-------TYSFLIRTCVTLSYPNLGTQLH 91
PKK + + + + HS L FD T ++ C L ++H
Sbjct: 50 PKKNVVTWNTMIAAFVHSGQSQEALDLFDEMGEEPSKITLIHALQACENLGALEKAQEIH 109
Query: 92 AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELE 151
+ I K+G++SH ++TAL N++ G + + +F+++P R++V WN M+ + G +E
Sbjct: 110 SRIIKLGWESHTILSTALFNVFAKHGIMLQARAIFEKMPHRDVVCWNSMVAAYARRGHIE 169
Query: 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIW 201
A LF M RN SW I+ Y + S A E ++IT LAVL A
Sbjct: 170 EAMKLFLSMSVRNASSWNSIITAYVQSGHSKEAFGLFKAMDLEGVEATKITFLAVLGACT 229
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
++ + +L+H GF A DI + LI YAKCG ++ +F IS N ++
Sbjct: 230 GTNSLAHGKLVHTLMVDAGF-AVDITAATALITMYAKCGAPEASKAVFLQIS--HHNCIT 286
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
W S+++ +A +G GKAAV+ F M PN++ F++VL+ACSHGGL
Sbjct: 287 WASLVAAYAHNGRGKAAVDFFRLMCLEAFTPNQIAFVNVLHACSHGGLLECGTSFFQSMV 346
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C+VD+LGR+GR + AE + L +P E D + +LL AC H +V+
Sbjct: 347 GDYGLEPIFEHYACMVDVLGRSGRTDIAENLILEMPFE-PDGLPWTVLLAACKIHHDVKR 405
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVG 389
G R K++E++ Y L+ N +G G
Sbjct: 406 GARAAEKIVELDPKRCAAYTLLANAYSGSG 435
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 115/248 (46%), Gaps = 45/248 (18%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY + G +++ +F L N+ +WN++I + G L+ AR LF MP +NVV+W +
Sbjct: 1 MYGACGQHQEALAVFQGLKSPNVFSWNIIILAYTQNGHLQEARELFSRMPKKNVVTWNTM 60
Query: 172 LDGYTRMNRSNGA-------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG---- 220
+ + +S A EPS+IT++ L A GA+ Q IH K G
Sbjct: 61 IAAFVHSGQSQEALDLFDEMGEEPSKITLIHALQACENLGALEKAQEIHSRIIKLGWESH 120
Query: 221 -------FNAF-------------------DIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
FN F D+ N ++ YA+ G I A+KLF +SV
Sbjct: 121 TILSTALFNVFAKHGIMLQARAIFEKMPHRDVVCWNSMVAAYARRGHIEEAMKLFLSMSV 180
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC------SHGG 308
+N SW SII+ + G K A F+ M G++ ++TFL+VL AC +HG
Sbjct: 181 --RNASSWNSIITAYVQSGHSKEAFGLFKAMDLEGVEATKITFLAVLGACTGTNSLAHGK 238
Query: 309 LHYGCLVD 316
L + +VD
Sbjct: 239 LVHTLMVD 246
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 191/369 (51%), Gaps = 47/369 (12%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT+S ++ C L+ +G Q+ K+GF S V +L++MY G + D+ K FD
Sbjct: 377 FTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI 436
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
L E+NL+++N +I K E A LF E+ ++ GAS
Sbjct: 437 LFEKNLISYNTVIDAYAKNLNSEEALELFNEIE-----------------DQGMGASA-- 477
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
T ++L G + + IH K G + V N LI Y++CG I SA ++
Sbjct: 478 --FTFASLLSGAASIGTIGKGEQIHARVIKSGLK-LNQSVCNALISMYSRCGNIESAFQV 534
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
FED+ E +N++SWTSII+GFA HG A+E F +M + G++PN VT+++VL+ACSH G
Sbjct: 535 FEDM--EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVG 592
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HY C+VD+LGR+G L +A + +P + D +V R
Sbjct: 593 LVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYK-ADALVWRT 651
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
LGAC HGN+E+G+ + ++E E + Y+L+ N+ A + ++ + +R+ M E+
Sbjct: 652 FLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXL 711
Query: 407 LKFPGRSLV 415
+K G S V
Sbjct: 712 IKEAGCSWV 720
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 164/377 (43%), Gaps = 76/377 (20%)
Query: 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYK------------QL 51
S ++ T +H L T + L ++ N+L+ YS +KA +++ +
Sbjct: 81 SFDIGTLVHEKL-TQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAM 139
Query: 52 QQIYTHSHSPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99
+ +++ R L + + ++ R C T + ++G + + K G+
Sbjct: 140 VSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGY 199
Query: 100 -QSHVYVNTALVNMYVS-LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
QS V V L++M+V G L + K+F+++PERN VTW +MIT L+++G A LF
Sbjct: 200 LQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLF 259
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
+M I GY EP T+ V+ A + Q +H
Sbjct: 260 LDM----------IFSGY-----------EPDRFTLSGVISACANMELLLLGQQLHSQAI 298
Query: 218 KRGFNAFDIRVSNCLIDTYAKC---GCIFSALKLFEDISVERKNLVSWTSIISGFAMH-G 273
+ G D V CLI+ YAKC G + +A K+F+ I N+ SWT++I+G+ G
Sbjct: 299 RHGLT-LDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL--DHNVFSWTAMITGYVQKGG 355
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------------------- 312
+ A++ F M + PN TF S L AC++ L G
Sbjct: 356 YDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN 415
Query: 313 CLVDMLGRAGRLEQAEK 329
L+ M R+GR++ A K
Sbjct: 416 SLISMYARSGRIDDARK 432
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 116/263 (44%), Gaps = 29/263 (11%)
Query: 47 LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106
L+K + + H P D TYS ++ C+ ++GT +H +++ Q
Sbjct: 47 LHKAISTLEHMVHQGSHP--DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104
Query: 107 TALVNMYVSLGFLKDSSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
+L+++Y G + ++ +F + R+L++W+ M++ M R +
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFAN-----------NNMGFRAL 153
Query: 166 VSWTGILD-GYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
+++ +++ GY P+E A A V I G+ K G+
Sbjct: 154 LTFVDMIENGYY-----------PNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQS 202
Query: 225 DIRVSNCLIDTYAKC-GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D+ V LID + K G + SA K+FE + +N V+WT +I+ G A++ F
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMP--ERNAVTWTLMITRLMQFGYAGEAIDLFL 260
Query: 284 RMQKVGLKPNRVTFLSVLNACSH 306
M G +P+R T V++AC++
Sbjct: 261 DMIFSGYEPDRFTLSGVISACAN 283
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 47/263 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ + ++A L+ +++ + +FT++ L+ ++ G
Sbjct: 445 YNTVIDAYAKNLNSEEALELFNEIEDQGMGA--------SAFTFASLLSGAASIGTIGKG 496
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+HA + K G + + V AL++MY G ++ + ++F+++ +RN+++W +ITG K
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKH 556
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV- 206
G A LF +M V P+E+T +AVL A G V
Sbjct: 557 GFATQALELFHKMLEEGV---------------------RPNEVTYIAVLSACSHVGLVN 595
Query: 207 ------RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
++ HG + A C++D + G + A++ + + LV
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYA-------CIVDILGRSGSLSEAIQFINSMPYKADALV 648
Query: 261 SWTSIISGFAMHG---MGKAAVE 280
W + + +HG +GK A +
Sbjct: 649 -WRTFLGACRVHGNLELGKHAAK 670
>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 604
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 215/418 (51%), Gaps = 73/418 (17%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P D+ T++ L+R C+ L + ++ + V N+ +++ Y ++G + +
Sbjct: 150 PRPDTVTWNTLLRACLR---SGLLPSARRLFDQMPHRDLVSYNS-MLSSYAAVGDMAGAG 205
Query: 124 KLFDELPERNLVTWNVMITGLVKWG-ELEYARSLFEEMPCRNVVSWTGILDGYTR----- 177
+LFDE+PER++VTWN M+ G + G ++ AR++F+ MP R+VVSW +LDGY +
Sbjct: 206 RLFDEMPERDVVTWNTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVV 265
Query: 178 --------MNRSNGAS-----------------------------TEPSEITILAVLPAI 200
M R + AS + P+E T ++VL A
Sbjct: 266 MAWAMFDGMPRRSAASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTAC 325
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G + + +HG +R D+ + L+ YAKCG + +A ++F+ +S +++
Sbjct: 326 GSLGDLERGKWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMS--ERSV 383
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
SW S+I G+ +HG + A+E F M+K G +PN TF+ VL++C+HGGL
Sbjct: 384 PSWNSMIIGYGLHGQSEKALELFLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDR 443
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
H+GC++D+LGRAG L+ +E + + + + + I++ A N
Sbjct: 444 MVRFYGFEPKAEHFGCMMDLLGRAGLLKDSENLIQNLQGKASPALW-GIMMSASQTQNNY 502
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++GE V +K++EM+ G Y+L+ NI A GR+ D E++R VM E A K+ G SL+
Sbjct: 503 KLGEFVGKKLIEMKPAEFGPYLLLSNIYASEGRWGDVEKVREVMKENGAEKYVGLSLI 560
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 67/428 (15%)
Query: 23 HHTLLFNTLLHFYSLADSPKK-AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
H + ++NTL+ + S K+ AF+LY+++ + SP D T+ F+++ C +
Sbjct: 112 HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE--RGESSP-----DKHTFPFVLKACAYI 164
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+ G Q+H I K GF VYVN L+++Y S G L + K+FDE+PER+LV+WN MI
Sbjct: 165 FGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 224
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
LV++GE + A LF EM S EP T+ +VL A
Sbjct: 225 DALVRFGEYDSALQLFREM----------------------QRSFEPDGYTMQSVLSACA 262
Query: 202 QNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G++ H + ++ A D+ V N LI+ Y KCG + A ++F+ +++++L
Sbjct: 263 GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GMQKRDL 320
Query: 260 VSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACSHGGL-------- 309
SW ++I GFA HG + A+ F+RM ++ ++PN VTF+ +L AC+H G
Sbjct: 321 ASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYF 380
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD++ RAG + +A + + +P + D V+ R LL AC G
Sbjct: 381 DMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRSLLDACCKKG 439
Query: 356 -NVEMGERVTRKVL----EMERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
+VE+ E + R ++ + E NG G YVL+ + A R+ D +R++M E
Sbjct: 440 ASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIR 499
Query: 408 KFPGRSLV 415
K PG S +
Sbjct: 500 KEPGCSSI 507
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 212/420 (50%), Gaps = 45/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ TL+ + + K+A LY Q+ RP F S ++ C +L G
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLA------DGCRPNISCF--SSVLGACASLQDLRSG 397
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H K+ ++V+V++AL++MY L D+ +F LP++N+V WN +I+G
Sbjct: 398 RKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNN 457
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITILAV 196
++ A LF++MP RNV SW I+ GY + NR + P EIT +V
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQ-NRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A ++ +++H K G I V L D YAK G + S+ ++F ++ +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKE-SIFVGTALSDMYAKSGDLDSSKRVFYEMP--K 573
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+N V+WT++I G A +G + ++ FE M G+ PN TFL++L ACSH GL
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHY 633
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG L +AE + L I S+ ++ LL AC+ +
Sbjct: 634 FEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESK-SEANSWAALLSACNIYR 692
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N EMGER +++ E+++ N YVL+ N+ A G++ DA +R +M N K G S V
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 171/403 (42%), Gaps = 64/403 (15%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
F ++ + L + PK A ++ ++ + SP + T +I+ C+ +L
Sbjct: 212 FFTAMIAGFVLNELPKDALGVF---HEMLSCGVSP-----NEITLVSVIKACIGAGEFDL 263
Query: 87 GTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ + K ++ V +L+ +Y+ G + ++FDE+ R++V+W ++
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILA 195
+ G+LE AR + +EMP RN VSW ++ + + + A + P+ +
Sbjct: 324 ELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--- 252
VL A +R+ + IH K + ++ VS+ LID Y KC + A +F +
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSN-NVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442
Query: 253 --------------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ +N+ SW SIISG+A + A+++F M
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502
Query: 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G P +TF SVL AC+ C ++M G++ A+ I LGI I V
Sbjct: 503 ASGQSPGEITFSSVLLACAS-----LCSLEM----GKMVHAKIIKLGIKESI---FVGTA 550
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
L + G+++ +RV EM + N + M LA G
Sbjct: 551 LSDMYAKSGDLDSSKRV---FYEMPKRNDVAWTAMIQGLAENG 590
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 68/322 (21%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V +V G + + +LFD +PER++V++ M+ L+K G + A L+ + P +V +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPA------------------- 199
T ++ G+ A P+EIT+++V+ A
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 200 ---IWQNGAVRNCQLIHGY-------GEKRGFNAFDIR--VS-NCLIDTYAKCGCIFSAL 246
+ +N VRN LI Y +R F+ ++R VS L+D YA+ G + A
Sbjct: 274 SNLLDKNLGVRN-SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGAR 332
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS- 305
++ +++ +N VSW ++++ G K AV + +M G +PN F SVL AC+
Sbjct: 333 RVLDEMP--ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 306 -----------HGGLHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
+ L C L+DM + +L A+ I +P + ++V
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK--NIVCWN 448
Query: 346 ILLGACSFHGNVEMGERVTRKV 367
L+ S + + E + +K+
Sbjct: 449 SLISGYSNNSKMVEAEELFKKM 470
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 80/268 (29%)
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
++ M+ VK G++ AR LF+ MP R+VVS YT M
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVS-------YTTM----------------- 185
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
+ A+ + G+VR+ ++ Y +C ++ F
Sbjct: 186 -VDALMKRGSVRDA-----------------------VELYRQCP--LCSVPFF------ 213
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315
T++I+GF ++ + K A+ F M G+ PN +T +SV+ AC G + +
Sbjct: 214 -------TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG-EFDLAM 265
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
++G A + +K LG+ + + + +R+ G+ + R+ EME +
Sbjct: 266 SIVGLAMKSNLLDK-NLGVRNSLITLYLRK---------GDADAARRMFD---EMEVRDV 312
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDE 403
+ + ++ A +G D E RRV+DE
Sbjct: 313 VSWTALLDVYAELG---DLEGARRVLDE 337
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 67/428 (15%)
Query: 23 HHTLLFNTLLHFYSLADSPKK-AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
H + ++NTL+ + S K+ AF+LY+++ + SP D T+ F+++ C +
Sbjct: 103 HSSFMWNTLIRACAHDVSRKEEAFMLYRKM--LERGESSP-----DKHTFPFVLKACAYI 155
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+ G Q+H I K GF VYVN L+++Y S G L + K+FDE+PER+LV+WN MI
Sbjct: 156 FGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 215
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
LV++GE + A LF EM S EP T+ +VL A
Sbjct: 216 DALVRFGEYDSALQLFREM----------------------QRSFEPDGYTMQSVLSACA 253
Query: 202 QNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G++ H + ++ A D+ V N LI+ Y KCG + A ++F+ +++++L
Sbjct: 254 GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GMQKRDL 311
Query: 260 VSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACSHGGL-------- 309
SW ++I GFA HG + A+ F+RM ++ ++PN VTF+ +L AC+H G
Sbjct: 312 ASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYF 371
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD++ RAG + +A + + +P + D V+ R LL AC G
Sbjct: 372 DMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRSLLDACCKKG 430
Query: 356 -NVEMGERVTRKVL----EMERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
+VE+ E + R ++ + E NG G YVL+ + A R+ D +R++M E
Sbjct: 431 ASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIR 490
Query: 408 KFPGRSLV 415
K PG S +
Sbjct: 491 KEPGCSSI 498
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 201/421 (47%), Gaps = 69/421 (16%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAV-ISKVGFQSHVYVNTALVNMYVSLG 117
S R LFD ++ + +S Y G + A + V+ TA+V+ Y G
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
L+++ ++FD +PERN V+WN M+ ++ ++ A+ LF MPCRNV SW +L GY +
Sbjct: 270 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQ 329
Query: 178 MNRSNGA----STEPSE--ITILAVLPAIWQNG--------------------------- 204
A T P + ++ A+L A Q G
Sbjct: 330 AGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACV 389
Query: 205 -------AVRNCQL-IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
A C + +HG + G+ V N L+ Y KCG + A FE++ E
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGY-GVGCFVGNALLAMYFKCGNMEDARNAFEEM--EE 446
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++VSW ++I+G+A HG GK A+E F+ M+ KP+ +T + VL ACSH GL
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C++D+LGRAGRL +A + +P E D + LLGA H
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE-PDSTMWGALLGASRIH 565
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
N E+G K+ E+E N G YVL+ NI A G++ DA ++R +M+ER K PG S
Sbjct: 566 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625
Query: 415 V 415
+
Sbjct: 626 I 626
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 171/386 (44%), Gaps = 83/386 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT-----CVTLS 82
+NTLLH +++ S A L+ ++ P+ DS TY+ +I + V+L+
Sbjct: 103 YNTLLHALAVSSSLADARGLFDEM------------PVRDSVTYNVMISSHANHGLVSLA 150
Query: 83 --YPNLGTQLHAVI----------------SKVGFQSHVYVN----TALVNMYVSLGFLK 120
Y +L + AV ++ F S + AL++ YV G +
Sbjct: 151 RHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMS 210
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
++ +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V +WT ++ GY +
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ--- 267
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-------FNAFDIR---VSN 230
NG E V A+ + AV ++ Y ++R FN R N
Sbjct: 268 -NGMLEEARR-----VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWN 321
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G + ++ F M + G
Sbjct: 322 TMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 379
Query: 291 KPNRVTFLSVLNACS-----------HG-----GLHYGCLVD-----MLGRAGRLEQAEK 329
NR F VL+ C+ HG G GC V M + G +E A
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 439
Query: 330 IALGIPSEITDVVVRRILLGACSFHG 355
+ E DVV ++ + HG
Sbjct: 440 AFEEM--EERDVVSWNTMIAGYARHG 463
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---- 163
A++ Y + G L ++ LF +P + ++N ++ L L AR LF+EMP R
Sbjct: 74 AMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT 133
Query: 164 ---------------------------NVVSWTGILDGYTRMNRSNGA------STEPSE 190
+ VSW G+L Y R R A TE
Sbjct: 134 YNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDV 193
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
I+ A++ Q G + + + R D+ N ++ YA+ G + A +LF+
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFD 248
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V +++ +WT+++SG+A +GM + A F+ M +
Sbjct: 249 AAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 186/343 (54%), Gaps = 40/343 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+L++ YV G ++D+ LFD +P R++VTW MI G K G + A+SLF+ MP R+VV+
Sbjct: 221 SLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVA 280
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + N+ + + E P E T++ VL AI Q G + IH Y
Sbjct: 281 YNSMMGGYVQ-NKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLY 339
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
++ F D ++ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G
Sbjct: 340 IVEKRF-LLDGKLGVALIDMYSKCGSIQQAMAVFEGI--ENKSIDHWNAMIGGLAVHGLG 396
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
+AA + ++K +KP+ +TF+ VLNACSH GL HYGC
Sbjct: 397 EAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 456
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+L R+G +E A+ + +P E D V+ R L ACS H E E V + L ++ G
Sbjct: 457 MVDLLARSGSIELAKHLISEMPIEPND-VIWRTFLNACSHHKEFETRELVVAENLILQAG 515
Query: 374 -NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A + D R+R +M ER K PG S +
Sbjct: 516 YNPSSYVLLSNMYASFEMWEDVRRVRTMMKERKIEKVPGCSWI 558
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 187/395 (47%), Gaps = 58/395 (14%)
Query: 26 LLFNTLLHFYSLADSPKKA-FLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
L+N ++ +S P++A FLL ++ ++ P+ D F+ S + + C L +
Sbjct: 51 FLWNAVIKSHSHGVDPRQALFLLCSMIE-----NNVPV----DKFSLSLVTKACSRLGFA 101
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H ++K S +++ L+ +Y+ L + ++FD +P+R+ V++N MI G
Sbjct: 102 KEGMQIHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGY 161
Query: 145 VKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGAST---------EPSEITI 193
VK G +E AR LF+ MP +N++SW ++ GY + R +G E I+
Sbjct: 162 VKCGLIESARELFDLMPKEKKNLISWNSMIGGYAQ--REDGVDIASKLFAEMPEKDLISW 219
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+++ ++G + + + + +R D+ +ID YAK G + A LF+
Sbjct: 220 NSLIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMIDGYAKLGFVHKAKSLFD--V 272
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGG---- 308
+ +++V++ S++ G+ + A+E F M+K L P+ T + VL+A + G
Sbjct: 273 MPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSK 332
Query: 309 ---LHYG--------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
+H L+DM + G ++QA + GI ++ D ++G
Sbjct: 333 AVDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSID--HWNAMIGGL 390
Query: 352 SFHGNVEMGERVTRKVLEME-RGNGGDYVLMYNIL 385
+ HG +GE ++E+E R DY+ +L
Sbjct: 391 AVHG---LGEAAFDMLMEIEKRFIKPDYITFVGVL 422
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 130/431 (30%), Positives = 224/431 (51%), Gaps = 89/431 (20%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV-TLSYPN 85
++N L +LA ++ LY+++ +I S D FTY+++++ CV + ++ +
Sbjct: 146 VWNALFRALTLAGYGREVLDLYRRMNRIGVPS--------DRFTYTYVLKACVASEAFVS 197
Query: 86 L---GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
L G ++H I + GF+ HV++ T L++MY G + ++S++FD+
Sbjct: 198 LLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQ-------------- 243
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE--------------- 187
MP +NVVSW+ ++ Y++ NG E
Sbjct: 244 -----------------MPVKNVVSWSAMIACYSK----NGKPLEALELFRKMMLENQDL 282
Query: 188 -PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+ +T+++VL A A+ +L+HGY +RG ++ + V + L+ YA+CG +
Sbjct: 283 LPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSI-LPVVSALVTVYARCGNLELGH 341
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++FE +E++++VSW S+IS + +HG G+ A++ F+ M GL P+ ++F+SVL ACSH
Sbjct: 342 RVFE--RMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSH 399
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VD+LGRA RL++A KI + E V
Sbjct: 400 AGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWG 459
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLG+C H NVE+ ER T ++ E+E N G+YVL+ +I A + + +R++ +++ R
Sbjct: 460 S-LLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEAR 518
Query: 405 NALKFPGRSLV 415
K PGRS +
Sbjct: 519 GLQKVPGRSCI 529
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 145/333 (43%), Gaps = 58/333 (17%)
Query: 50 QLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109
Q Q+ + +P + TY LI +C + G LH + G ++ T L
Sbjct: 65 QALQVLSQEPNPTQ-----HTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKL 119
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
+NMY L + ++ K+FD+ +R + WN + L G Y R
Sbjct: 120 INMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAG---YGRE-------------- 162
Query: 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA----VRNCQLIHGYGEKRGFNAFD 225
+LD Y RMNR S T VL A + A + N + IHG+ + GF
Sbjct: 163 -VLDLYRRMNRIGVPS---DRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGH- 217
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ + L+D YA+ GC+ +A ++F+ + V KN+VSW+++I+ ++ +G A+E F +M
Sbjct: 218 VHIMTTLLDMYARFGCVLNASRVFDQMPV--KNVVSWSAMIACYSKNGKPLEALELFRKM 275
Query: 286 --QKVGLKPNRVTFLSV------LNACSHGGLHYG---------------CLVDMLGRAG 322
+ L PN VT +SV L A G L +G LV + R G
Sbjct: 276 MLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCG 335
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
LE ++ + E DVV L+ + HG
Sbjct: 336 NLELGHRVFERM--EKRDVVSWNSLISSYGIHG 366
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 212/420 (50%), Gaps = 45/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ TL+ + + K+A LY Q+ RP F S ++ C +L G
Sbjct: 346 WGTLVARHEQKGNAKEAVSLYSQMLA------DGCRPNISCF--SSVLGACASLQDLRSG 397
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H K+ ++V+V++AL++MY L D+ +F LP++N+V WN +I+G
Sbjct: 398 RKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNN 457
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-----------GASTEPSEITILAV 196
++ A LF++MP RNV SW I+ GY + NR + P EIT +V
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQ-NRQFIDALKSFHAMLASGQSPGEITFSSV 516
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A ++ +++H K G I V L D YAK G + S+ ++F ++ +
Sbjct: 517 LLACASLCSLEMGKMVHAKIIKLGIKE-SIFVGTALSDMYAKSGDLDSSKRVFYEMP--K 573
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+N V+WT++I G A +G + ++ FE M G+ PN TFL++L ACSH GL
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHY 633
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG L +AE + L I S+ ++ LL AC+ +
Sbjct: 634 FEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESK-SEANSWAALLSACNIYR 692
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N EMGER +++ E+++ N YVL+ N+ A G++ DA +R +M N K G S V
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 171/403 (42%), Gaps = 64/403 (15%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
F ++ + L + PK A ++ ++ + SP + T +I+ C+ +L
Sbjct: 212 FFTAMIAGFVLNELPKDALGVF---HEMLSCGVSP-----NEITLVSVIKACIGAGEFDL 263
Query: 87 GTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+ + K ++ V +L+ +Y+ G + ++FDE+ R++V+W ++
Sbjct: 264 AMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYA 323
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILA 195
+ G+LE AR + +EMP RN VSW ++ + + + A + P+ +
Sbjct: 324 ELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI--- 252
VL A +R+ + IH K + ++ VS+ LID Y KC + A +F +
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSN-NVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442
Query: 253 --------------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ +N+ SW SIISG+A + A+++F M
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502
Query: 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
G P +TF SVL AC+ C ++M G++ A+ I LGI I V
Sbjct: 503 ASGQSPGEITFSSVLLACAS-----LCSLEM----GKMVHAKIIKLGIKESI---FVGTA 550
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
L + G+++ +RV EM + N + M LA G
Sbjct: 551 LSDMYAKSGDLDSSKRV---FYEMPKRNDVAWTAMIQGLAENG 590
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 68/322 (21%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V +V G + + +LFD +PER++V++ M+ L+K G + A L+ + P +V +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPA------------------- 199
T ++ G+ A P+EIT+++V+ A
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273
Query: 200 ---IWQNGAVRNCQLIHGY-------GEKRGFNAFDIR--VS-NCLIDTYAKCGCIFSAL 246
+ +N VRN LI Y +R F+ ++R VS L+D YA+ G + A
Sbjct: 274 SNLLDKNLGVRN-SLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGAR 332
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS- 305
++ +++ +N VSW ++++ G K AV + +M G +PN F SVL AC+
Sbjct: 333 RVLDEMP--ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 306 -----------HGGLHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
+ L C L+DM + +L A+ I +P + ++V
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK--NIVCWN 448
Query: 346 ILLGACSFHGNVEMGERVTRKV 367
L+ S + + E + +K+
Sbjct: 449 SLISGYSNNSKMVEAEELFKKM 470
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 80/268 (29%)
Query: 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILA 195
++ M+ VK G++ AR LF+ MP R+VVS YT M
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVS-------YTTM----------------- 185
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
+ A+ + G+VR+ ++ Y +C ++ F
Sbjct: 186 -VDALMKRGSVRDA-----------------------VELYRQCP--LCSVPFF------ 213
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315
T++I+GF ++ + K A+ F M G+ PN +T +SV+ AC G + +
Sbjct: 214 -------TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG-EFDLAM 265
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
++G A + +K LG+ + + + +R+ G+ + R+ EME +
Sbjct: 266 SIVGLAMKSNLLDK-NLGVRNSLITLYLRK---------GDADAARRMFD---EMEVRDV 312
Query: 376 GDYVLMYNILAGVGRYVDAERLRRVMDE 403
+ + ++ A +G D E RRV+DE
Sbjct: 313 VSWTALLDVYAELG---DLEGARRVLDE 337
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 213/413 (51%), Gaps = 43/413 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ + +A YK+ ++ S ++ F+ F+++ L+ CV L
Sbjct: 147 WNTMVIGYAQDGNLHEALWFYKEFRR------SGIK--FNEFSFAGLLTACVKSRQLQLN 198
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q H + GF S+V ++ ++++ Y G ++ + + FDE+ +++ W +I+G K
Sbjct: 199 RQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++E A LF EMP +N VSWT ++ GY R N A +P + T + L
Sbjct: 259 GDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCL 318
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A ++R+ + IHGY + I +S+ LID Y+K G + ++ ++F I ++
Sbjct: 319 CASASIASLRHGKEIHGYMIRTNVRPNAIVISS-LIDMYSKSGSLEASERVFR-ICDDKH 376
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ V W ++IS A HG+G A+ + M K ++PNR T + +LNACSH GL
Sbjct: 377 DCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWF 436
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CL+D+LGRAG ++ + +P E D + +LG C HG
Sbjct: 437 ESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFE-PDKHIWNAILGVCRIHG 495
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
N E+G++ ++++++ + Y+L+ +I A G++ E+LR VM +R K
Sbjct: 496 NEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNK 548
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 176/386 (45%), Gaps = 70/386 (18%)
Query: 47 LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYV 105
L + + ++ + + +R FD + L++ C G +H + GF+ + +
Sbjct: 27 LSQAVSRLESLTQQGIRLPFD--LLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLL 84
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
+ L+ MY+ G D+ K+FD++ RNL +WN M++G VK G L AR +F+ MP R+V
Sbjct: 85 SNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDV 144
Query: 166 VSWTGILDGYTR-------------MNRSNGASTEPSEITILA----------------- 195
VSW ++ GY + RS E S +L
Sbjct: 145 VSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQ 204
Query: 196 VLPAIWQNGAVRNCQLIHGYGE-------KRGFNAF---DIRVSNCLIDTYAKCGCIFSA 245
VL A + + V +C +I Y + KR F+ DI + LI YAK G + +A
Sbjct: 205 VLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAA 264
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
KLF + KN VSWT++I+G+ G G A++ F +M +G+KP + TF S L A +
Sbjct: 265 EKLF--CEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASA 322
Query: 306 ------HGGLHYG---------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
HG +G L+DM ++G LE +E++ I + D V
Sbjct: 323 SIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERV-FRICDDKHDCVFW 381
Query: 345 RILLGACSFHGNVEMGERVTRKVLEM 370
++ A + HG +G + R + +M
Sbjct: 382 NTMISALAQHG---LGHKALRMLDDM 404
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 191/362 (52%), Gaps = 35/362 (9%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+S ++ C +L G ++HA K+G ++V+V+ +L++MY D+ +FD LP
Sbjct: 382 FSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLP 441
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNR 180
++N+V WN +++G G++ A LF++MP RN+ SW I+ GY + N
Sbjct: 442 QKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNA 501
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+ P EIT +VL A ++ ++ H K G I + L D YAK G
Sbjct: 502 MLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEE-SIFIGTALSDMYAKSG 560
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ ++F + +N V+WT++I G A +G + ++ FE M G+ PN TFL++
Sbjct: 561 DLQSSKRMF--YQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLAL 618
Query: 301 LNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
L ACSHGGL HY C+VD+L RAGRL +AE + + PS+ +
Sbjct: 619 LFACSHGGLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSK-S 677
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
+ LL AC+ + N E+ ER +++ E+ + N YVL+ N+ A GR+ DA R+R
Sbjct: 678 EANSWAALLSACNTYRNEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRV 737
Query: 400 VM 401
+M
Sbjct: 738 LM 739
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLK 120
+RP + T +I+ CV L + + K F +S + V +L+ +Y+ +G
Sbjct: 242 VRP--NGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAA 299
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
+ K+FDE+ +++V+W ++ + G+L+ AR + + MP RN VSW ++ + + R
Sbjct: 300 AARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQ--R 357
Query: 181 SNGAST------------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
N A P+ +VL A +R IH K G ++ ++ V
Sbjct: 358 GNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMG-SSTNVFV 416
Query: 229 SNCLIDTYAKC-------------------------------GCIFSALKLFEDISVERK 257
S LID Y KC G + A+ LF+ + +
Sbjct: 417 SCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPA--R 474
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDM 317
NL SW +IISG+A + A+++F M G P +TF SVL AC++ L +
Sbjct: 475 NLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACAN-------LCSL 527
Query: 318 LGRAGRLEQAEKIALGIPSEI 338
+ G++ A+ I LGI I
Sbjct: 528 V--TGKMAHAKTIKLGIEESI 546
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 39/236 (16%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ +V G + + +LFD +P+R +V++ M+ L+K G + A L+E+ P +V +
Sbjct: 155 MVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 214
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T + G+ R + A P+ ITI+ ++ A G I G K
Sbjct: 215 TATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIK 274
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----------------------- 255
F I V N LI Y + G +A K+F+++ V+
Sbjct: 275 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 334
Query: 256 ------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+N VSW ++I+ G AV+ + +M G +PN F SVL+AC+
Sbjct: 335 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 390
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+S ++ C L G HA K+G + +++ TAL +MY G L+ S ++F ++
Sbjct: 513 TFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQM 572
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
PERN VTW MI GL + G E + LFE+M + G T P+
Sbjct: 573 PERNDVTWTAMIQGLAENGFAEESILLFEDM----------MATGMT-----------PN 611
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKL 248
E T LA+L A G V Q IH + + + + + C++D A+ G + A L
Sbjct: 612 EHTFLALLFACSHGGLVE--QAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLAEAEAL 669
Query: 249 FEDISVERKNLVSWTSIISG 268
+ + SW +++S
Sbjct: 670 LMK-TPSKSEANSWAALLSA 688
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 41/194 (21%)
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
++D K G + A++L+E ++ +T+ ISGF + + A+ F +M ++
Sbjct: 186 MVDALMKRGRVAEAVELYEQ--CPSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVR 243
Query: 292 PNRVTFLSVLNACSHGGLHYGCLVDMLG-----------------------RAGRLEQAE 328
PN +T + ++ AC G +G + ++G R G A
Sbjct: 244 PNGITIVCMIKACVGAG-EFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAAR 302
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-------------ERGNG 375
K+ + ++ DVV LL S G+++ RV + E +RGN
Sbjct: 303 KVFDEM--DVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNA 360
Query: 376 GDYVLMYNILAGVG 389
+ V +Y+ + G
Sbjct: 361 AEAVKLYSQMLADG 374
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 184/344 (53%), Gaps = 44/344 (12%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+++ Y G + ++ LF ++P +N V+WN MI+G + GE++ A +FE M RNV+S
Sbjct: 364 SMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVIS 423
Query: 168 WTGILDGYTRMNRSNG--------------ASTEPSEITILAVLPAIWQNGAVRNCQLIH 213
W ++ G+ + NG +P + T L + A++ + +H
Sbjct: 424 WNSLITGFLQ----NGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLH 479
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
K G+ D+ VSN LI YAKCG + SA K+F+DI E +L+SW S+ISG+A++G
Sbjct: 480 ELILKSGY-INDLFVSNALIAMYAKCGGVQSAEKVFKDI--EGVDLISWNSLISGYALNG 536
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HY 311
A FE+M G P+ VTF+ +L+ACSH GL HY
Sbjct: 537 YANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHY 596
Query: 312 GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371
CLVD+LGR GRLE+A I G+ + + + LL AC H N+E+G+ ++LE+E
Sbjct: 597 SCLVDLLGRMGRLEEAFNIVRGMKVK-ANAGLWGSLLAACRVHKNMELGKIAALRLLELE 655
Query: 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N +Y+ + N+ A GR+ D ERLR +M ER A K PG S +
Sbjct: 656 PHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWI 699
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 19/228 (8%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G + ++ KLFD +P +N+V+WN MI V+ +++ A LF+E P ++ VSWT +++GY
Sbjct: 249 GKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYV 308
Query: 177 RMNRSNGASTEPSEI------TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
R+ + + A +++ A++ + QNG + + KR D N
Sbjct: 309 RVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKR-----DAICWN 363
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
+I Y + G + AL LF + V KN VSW ++ISG+A G A E FE M G+
Sbjct: 364 SMIAGYCQSGRMSEALNLFRQMPV--KNAVSWNTMISGYAQAGEMDRATEIFEAM---GV 418
Query: 291 KPNRVTFLSVLNACSHGGLHYGCLVD--MLGRAGRLEQAEKIALGIPS 336
+ N +++ S++ GL+ L ++G+ G+ A + S
Sbjct: 419 R-NVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSS 465
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 131/272 (48%), Gaps = 30/272 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
A++ YV + ++ KLF E P ++ V+W MI G V+ G+L+ AR ++ +MP ++V +
Sbjct: 271 AMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAA 330
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
T ++ G + R + AS S++ + W + CQ F ++
Sbjct: 331 KTALMSGLIQNGRIDEASQVFSQLNKRDAI--CWNSMIAGYCQSGRMSEALNLFRQMPVK 388
Query: 228 VS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ N +I YA+ G + A ++FE + V +N++SW S+I+GF +G+ A+++
Sbjct: 389 NAVSWNTMISGYAQAGEMDRATEIFEAMGV--RNVISWNSLITGFLQNGLYLDALKSLVL 446
Query: 285 MQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGR 323
M + G KP++ TF L++C++ L G L+ M + G
Sbjct: 447 MGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGG 506
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
++ AEK+ I E D++ L+ + +G
Sbjct: 507 VQSAEKVFKDI--EGVDLISWNSLISGYALNG 536
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 25/219 (11%)
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
V S V ++H N+ +V ++ G + D+ +LFD++ +RNLV+WN MI G + +E
Sbjct: 39 VFSNVIHKNHATYNS-MVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEE 97
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212
A LF+ M R+ SW ++ YTR A E E+ + A W +I
Sbjct: 98 AHKLFDLMAERDNFSWALMITCYTRKGMLEKAR-ELFELVPDKLDTACWN-------AMI 149
Query: 213 HGYGEKRGFN----------AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
GY +K F+ D+ N ++ Y + G + A+K FE ++ +N+VSW
Sbjct: 150 AGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMA--ERNVVSW 207
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+++GF + +A E FE++ PN V+++++L
Sbjct: 208 NLMVAGFVNNCDLGSAWELFEKIP----DPNAVSWVTML 242
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 112/270 (41%), Gaps = 49/270 (18%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T++ + +C L+ +G QLH +I K G+ + ++V+ AL+ MY G ++ + K+F
Sbjct: 455 DQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVF 514
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
++ +L++WN +I+G G A FE+M V
Sbjct: 515 KDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTV-------------------- 554
Query: 187 EPSEITILAVLPAIWQNGAVRN------CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P E+T + +L A G C +I G+ + + +CL+D + G
Sbjct: 555 -PDEVTFIGMLSACSHAGLTNQGVDLFKC-MIEGFAIEPLAEHY-----SCLVDLLGRMG 607
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ A + + V + N W S+++ +H ++ ++ L +
Sbjct: 608 RLEEAFNIVRGMKV-KANAGLWGSLLAACRVHK---------------NMELGKIAALRL 651
Query: 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
L H +Y L +M AGR E E++
Sbjct: 652 LELEPHNASNYITLSNMHAEAGRWEDVERL 681
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G + ++ ++F + +N T+N M+T K G + AR LF++M RN+VSW ++ GY
Sbjct: 31 GKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYL 90
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK-RGF-----NAFDIRVSN 230
N E ++ L + + C G EK R + D N
Sbjct: 91 H----NNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFELVPDKLDTACWN 146
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
+I YAK G A K+FE + V K+LVS+ S+++G+ +G A++ FERM + +
Sbjct: 147 AMIAGYAKKGRFDDAEKVFEKMPV--KDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNV 204
Query: 291 KPNRVTFLSVLNACSHG 307
+ +N C G
Sbjct: 205 VSWNLMVAGFVNNCDLG 221
>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
Length = 608
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 37/378 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT + C + ++H + G + V + A++N Y ++D+ L
Sbjct: 170 MDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHL 229
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD++ R+ VTW MI+G + +L A +F+ MP ++ ++WT ++ G+ + + A
Sbjct: 230 FDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTAL 289
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLI 233
P+ +++ L A + G V + +H + +R G F+I + N L+
Sbjct: 290 ELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALV 349
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y+KCG + +A+ +F+ + ++ +SW S+++GF+ +G+GK ++ FE M G++P
Sbjct: 350 DMYSKCGDMMAAMAVFD--WMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPT 407
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTFL+VL ACSH GL HY +D LGR +LE+A +
Sbjct: 408 HVTFLAVLTACSHSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIK 467
Query: 333 GIPSEITDVVVRR--ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+PS I LLGAC HGN+E+ E V + +E GN G YV+M NI A G+
Sbjct: 468 DLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQ 527
Query: 391 YVDAERLRRVMDERNALK 408
+ DA R+R +M E+ K
Sbjct: 528 WDDARRVRGLMKEKGLKK 545
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 48/272 (17%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+LG +HA + K SH ++ LV +Y SL + K F +LP +N ++N ++ L
Sbjct: 49 HLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAAL 108
Query: 145 VKWGE-LEYARSLFEEMPC--RNVVSWTGILDGY-------------TRMNRSN--GAST 186
++ + L A LF+ MP RN+VS+ ++ R+ R G
Sbjct: 109 LRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGL 168
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
T+++V A GA R + +HG G F + ++N +++ Y+K + A
Sbjct: 169 AMDRFTVVSVATACAGIGAARPLREMHGAVVVSGME-FTVIMANAMLNAYSKARRVEDAR 227
Query: 247 KLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMGKA 277
LF+ +S+ K+ ++WT++ISG +G
Sbjct: 228 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 287
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
A+E FE+M G+ P +S L AC+ GL
Sbjct: 288 ALELFEQMLAKGVSPTPFVLVSALGACAKLGL 319
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 183/363 (50%), Gaps = 47/363 (12%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C L + G ++H ++ ++G S+V V AL+ MY + +S +FDEL R
Sbjct: 269 LQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN MI G + G E A LF M NV +P T++
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENV---------------------KPDSFTLV 367
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+V+PA+ + IHGY + + D+ V LID YAKCG + A LF S
Sbjct: 368 SVIPALADISDPLQARWIHGYSIRLHLDQ-DVYVLTALIDMYAKCGRVNIARILFN--SA 424
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+++++W ++I G+ HG GKAAVE FE M+ +G+ PN TFLSVL+ACSH GL
Sbjct: 425 RERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGR 484
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYG +VD+LGRAG+L++A +P + + V +LGAC
Sbjct: 485 EYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD-PGLSVYGAMLGACK 543
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NVE+ E +K+ E+ G +VL+ NI A + D R+R M++ K PG
Sbjct: 544 LHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGW 603
Query: 413 SLV 415
S++
Sbjct: 604 SII 606
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 27/245 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T++ L++ C G +HA ++ G S TAL NMY D+ ++FD +
Sbjct: 61 TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P R+ V WN ++ G YAR+ M VV RM G P
Sbjct: 121 PVRDRVAWNALVAG--------YARNGLARMAMEMVV----------RMQEEEG--ERPD 160
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
IT+++VLPA A+ C+ H + + G + V+ ++D Y KCG I +A +F
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARVVF 219
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ + KN VSW ++I G+A +G + A+ F RM + G+ V+ L+ L AC
Sbjct: 220 DWMPT--KNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACG---- 273
Query: 310 HYGCL 314
GCL
Sbjct: 274 ELGCL 278
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 26/241 (10%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP DS T ++ C + HA + G + V V TA+++ Y G ++ +
Sbjct: 158 RP--DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAA 215
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+FD +P +N V+WN MI G + G+ A +LF NR
Sbjct: 216 RVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALF---------------------NRMV 254
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ +++++LA L A + G + +H + G ++ ++ V N LI Y+KC +
Sbjct: 255 EEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS-NVSVMNALITMYSKCKRV 313
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +F+++ +R+ VSW ++I G A +G + AV F RMQ +KP+ T +SV+
Sbjct: 314 DLASHVFDEL--DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371
Query: 303 A 303
A
Sbjct: 372 A 372
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 32/228 (14%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DSFT +I +S P +H ++ VYV TAL++MY G + + LF
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+ ER+++TWN MI G G + A LFEEM +V
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIV-------------------- 461
Query: 187 EPSEITILAVLPAIWQNGAVRN-----CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P+E T L+VL A G V + YG + G + ++D + G
Sbjct: 462 -PNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHY-----GTMVDLLGRAGK 515
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
+ A + + ++ L + +++ +H + A E+ +++ ++G
Sbjct: 516 LDEAWAFIQKMPMD-PGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 194/387 (50%), Gaps = 41/387 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T + +I C +LS +G ++H V+ ++ + ++ A V+MY +K++ +
Sbjct: 252 DEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFI 311
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD +P RN++ MI+G + AR +F +M RNVVSW ++ GYT+ + A
Sbjct: 312 FDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEAL 371
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-----AFDIRVSN 230
S P+ + +L A + H + K GF DI V N
Sbjct: 372 SLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGN 431
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LID Y KCGC+ +F + +ER + VSW ++I GFA +G G A+E F M + G
Sbjct: 432 SLIDMYVKCGCVEEGYLVFRKM-MER-DCVSWNAMIIGFAQNGYGNEALELFREMLESGE 489
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ +T + VL+AC H G HY C+VD+LGRAG LE+A+
Sbjct: 490 KPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAK 549
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + D V+ LL AC H N+ +G+ V K+LE+E N G YVL+ N+ A +
Sbjct: 550 SMIEEMPMQ-PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAEL 608
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
G++ D +R+ M + K PG S +
Sbjct: 609 GKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 36/309 (11%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQ-LHAVISKVGFQSHVYVNTALVNMYVSLGF 118
+ L DS ++ L+ +C+ + + +HA + K GF + +++ L++ Y G
Sbjct: 11 ADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGS 70
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L+D ++FD++P+RN+ TWN ++TGL K G L+ A SLF MP R+ +W ++ G+ +
Sbjct: 71 LEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 179 NRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+R A +E + +VL A + +H K F + D+ +
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS-DVYI 189
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
+ L+D Y+KCG + A ++F+++ +N+VSW S+I+ F +G A++ F+ M +
Sbjct: 190 GSALVDMYSKCGNVNDAQRVFDEMG--DRNVVSWNSLITCFEQNGPAVEALDVFQMMLES 247
Query: 289 GLKPNRVTFLSVLNACS-----------HGG-----------LHYGCLVDMLGRAGRLEQ 326
++P+ VT SV++AC+ HG + VDM + R+++
Sbjct: 248 RVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKE 307
Query: 327 AEKIALGIP 335
A I +P
Sbjct: 308 ARFIFDSMP 316
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 62/337 (18%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
+ + ++++ ++ C L+ N G Q+H++I+K F S VY+ +ALV+MY G + D+ +
Sbjct: 149 VLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQR 208
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FDE+ +RN+V+WN +IT + G A +F+ M V
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV------------------- 249
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E+T+ +V+ A A++ Q +HG K DI +SN +D YAKC I
Sbjct: 250 --EPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKE 307
Query: 245 ALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMG 275
A +F+ + + +N+VSW ++I+G+ +G
Sbjct: 308 ARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGEN 367
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--CLVDMLGRAGRLEQAEKIAL 332
+ A+ F +++ + P +F ++L AC+ LH G V +L + + E+ +
Sbjct: 368 EEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDI 427
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+ + + D+ V+ C G VE G V RK++E
Sbjct: 428 FVGNSLIDMYVK------C---GCVEEGYLVFRKMME 455
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 220/451 (48%), Gaps = 74/451 (16%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFY----SLADS-------PKKAFLLYKQLQQIYTHSH 59
IH+HL + L N+L+H Y ++AD+ P + + L Y +
Sbjct: 86 IHAHL-AGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQND 144
Query: 60 SP----------LRPLF--DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
P LR F + FT++ L++ + +G Q+HA+ K + VYV +
Sbjct: 145 MPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGS 204
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
AL++MY G + + +FD+L +N V+WN +I G + G+ E +F EM
Sbjct: 205 ALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM------- 257
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG--FNAFD 225
+ NG E + T +V AI GA+ + +H + K G +AF
Sbjct: 258 ------------QRNG--FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF- 302
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
V N ++D YAK G + A K+F+ V++K++V+W S+++ FA +G+G+ AV +FE M
Sbjct: 303 --VGNTILDMYAKSGSMIDARKVFD--RVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEM 358
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRL 324
+K G+ N++TFLS+L ACSHGGL HY +VD+LGRAG L
Sbjct: 359 RKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLL 418
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
A +P + T V LLG+C H N ++G+ V E++ + G VL+YNI
Sbjct: 419 NDALVFIFKMPMKPT-AAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNI 477
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A G++ A R+R++M K P S V
Sbjct: 478 YASTGQWDAAARVRKMMKATGVKKEPACSWV 508
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 134/275 (48%), Gaps = 29/275 (10%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y LI C + +HA ++ F V+++ +L+++Y G + D+ ++FD +P
Sbjct: 67 YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
R++ +W +I G YA++ +MP + G+L G R +P+
Sbjct: 127 ARDMCSWTSLIAG--------YAQN---DMPDEAL----GLLPGMLR------GRFKPNG 165
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T ++L A + + + IH K ++ D+ V + L+D YA+CG + A+ +F+
Sbjct: 166 FTFASLLKAAGASASSGIGEQIHALTVKYDWHD-DVYVGSALLDMYARCGRMDMAIAVFD 224
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGL 309
+ E KN VSW ++I+GFA G G+ + F MQ+ G + T+ SV +A + G L
Sbjct: 225 QL--ESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
G V A ++ E+++ + + I D+ +
Sbjct: 283 EQGKWV----HAHMIKSGERLSAFVGNTILDMYAK 313
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 209/410 (50%), Gaps = 49/410 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHS-HSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+NTLL Y+ + A ++ +++ + P D++T+ L++ C
Sbjct: 103 YNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAP--DTYTFVSLLKACAAARAGEE 160
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q H V KVG H YV L+NMY G + + +F + +V++N MIT V+
Sbjct: 161 GRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVR 220
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
A LF EM + + + + +T+++VL A GA+
Sbjct: 221 SSRPGEALVLFREMQAKGL---------------------KLTSVTLISVLSACALLGAL 259
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y K ++ ++V+ LID Y KCG + A+ +F+ +E ++ +W+ +I
Sbjct: 260 ELGRWIHEYVRKVQLDSL-VKVNTALIDMYGKCGSLEDAISVFQ--GMESRDRQAWSVMI 316
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+A H G+ A+ FE M+K G+KP+ VTFL VL ACSH GL
Sbjct: 317 VAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFGLV 376
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+ D+L R+G+L++A + +P + T ++ R LL AC G+ ++G++V
Sbjct: 377 PGIKHYGCVADLLARSGQLDRAYEFIDELPIKPT-AILWRTLLSACGSRGDADLGKQVFE 435
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++LE++ +GGDYV+ N+ A GR+ + R+R++M+E+ +K PG S +
Sbjct: 436 RILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSI 485
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 109/288 (37%), Gaps = 68/288 (23%)
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLHA K G Q+H T L+ + G K
Sbjct: 48 AQLHAAAVKSGLQAHPAFVTRLLTLCTD--------------------------QGAAKP 81
Query: 148 GELEYARSLFEEMPCRNVVSW-TGILDGYTRMNRSNGA-----------------STEPS 189
+L YAR +F+ +P V W +L GY R + + GA P
Sbjct: 82 AQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPD 141
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
T +++L A A + HG K G + V LI+ YA+CG +A +F
Sbjct: 142 TYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEY-VLPTLINMYAECGDARAARTMF 200
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-HGG 308
V+ + +VS+ ++I+ A+ F MQ GLK VT +SVL+AC+ G
Sbjct: 201 G--RVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGA 258
Query: 309 LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPS 336
L G L+DM G+ G LE A + G+ S
Sbjct: 259 LELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMES 306
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 182/335 (54%), Gaps = 33/335 (9%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY S G + + K+FDE+ RN V+WN M+ G K G+L+ AR +FE MP R+VVSW+ +
Sbjct: 1 MYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSM 60
Query: 172 LDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+DG + R + +E+T+++VL A GA+ + +H Y
Sbjct: 61 IDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTM 120
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
F + + L+D YAKCG I A+ +F + +++ +++ W +II G A HG+ ++E
Sbjct: 121 R-FTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLEL 179
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGR 320
F+ MQ +G+ P+ +T+L + +AC+HGGL HY C+VD+L R
Sbjct: 180 FKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSR 239
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AG+L +A +P E T ++ +L G C H ++ ERV RK++E+E + G Y+
Sbjct: 240 AGQLAEAYDFIAQMPMEPTASMLGALLNG-CMNHRRFDLAERVGRKLIELEPDHDGRYIG 298
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ N+ AGV + +A +R M+ R K PG S V
Sbjct: 299 LSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFV 333
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 184/343 (53%), Gaps = 39/343 (11%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY-ARSLFEEMPCRNV 165
T+++ YV G + ++ LFD +P ++L +WNVM++G + G+ AR LF++MP +N+
Sbjct: 171 TSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNL 230
Query: 166 VSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ-LIHG 214
V+W+ ++ GY R R +P E IL ++ A Q G + + +IH
Sbjct: 231 VTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHN 290
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
Y + D+RV LID YAKCG I AL++FE K+L+ ++++I+ A HG+
Sbjct: 291 YVGPSLLS--DLRVFTSLIDMYAKCGSIEKALQMFE--MAHPKDLLCYSTMIAALANHGL 346
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
G+ A+ F++MQ+ +KP+ VTFL VL AC+HGGL HY
Sbjct: 347 GRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYA 406
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C+VD+LGR G LE+A + +P VV LL AC H NV++ E ++ ++E
Sbjct: 407 CVVDLLGRVGCLEEAYNLIRNMPIA-PHSVVWGALLAACRVHCNVQLAEVAAAELFKIEP 465
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N G+Y+L+ NI A GR+ ++R + E K G S +
Sbjct: 466 DNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWI 508
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 154/374 (41%), Gaps = 93/374 (24%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDEL 129
+I C TL L ++ +++ +S V +V L+ +Y G + K+FDE+
Sbjct: 8 IIHNCKTLK------SLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEI 61
Query: 130 PERNLVTWNVMITGLVKWGELEYARSL--------------------------------- 156
+ N W +I G V+ + + A SL
Sbjct: 62 TQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQ 121
Query: 157 ------FEEMPCRNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG 204
F+EM +++VSW ++ GY +R + A E + ++ +++ + G
Sbjct: 122 AVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAG 181
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCL-IDTYAKCG-CIFSALKLFEDISVERKNLVSW 262
+ Q++ + ++++ VS + I Y C+F + + KNLV+W
Sbjct: 182 DMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPM--------KNLVTW 233
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG--------LH---- 310
+++I G+A +G A+E FER ++ +KP+ L +++ACS G +H
Sbjct: 234 STMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVG 293
Query: 311 ---------YGCLVDMLGRAGRLEQA-EKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
+ L+DM + G +E+A + + P D++ ++ A + HG +G
Sbjct: 294 PSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPK---DLLCYSTMIAALANHG---LG 347
Query: 361 ERVTRKVLEMERGN 374
+M+R N
Sbjct: 348 RDAIFLFDKMQRAN 361
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 183/363 (50%), Gaps = 47/363 (12%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C L + G ++H ++ ++G S+V V AL+ MY + +S +FDEL R
Sbjct: 269 LQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN MI G + G E A LF M NV +P T++
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENV---------------------KPDSFTLV 367
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+V+PA+ + IHGY + + D+ V LID YAKCG + A LF S
Sbjct: 368 SVIPALADISDPLQARWIHGYSIRLHLDQ-DVYVLTALIDMYAKCGRVNIARILFN--SA 424
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+++++W ++I G+ HG GKAAVE FE M+ +G+ PN TFLSVL+ACSH GL
Sbjct: 425 RERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGR 484
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYG +VD+LGRAG+L++A +P + + V +LGAC
Sbjct: 485 EYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD-PGLSVYGAMLGACK 543
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NVE+ E +K+ E+ G +VL+ NI A + D R+R M++ K PG
Sbjct: 544 LHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGW 603
Query: 413 SLV 415
S++
Sbjct: 604 SII 606
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 27/245 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T++ L++ C G +HA ++ G S TAL NMY D+ ++FD +
Sbjct: 61 TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P R+ V WN ++ G YAR+ M VV RM G P
Sbjct: 121 PVRDRVAWNALVAG--------YARNGLARMAMEMVV----------RMQEEEG--ERPD 160
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
IT+++VLPA A+ C+ H + + G + V+ ++D Y KCG I +A +F
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARVVF 219
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ + KN VSW ++I G+A +G + A+ F RM + G+ V+ L+ L AC
Sbjct: 220 DWMPT--KNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACG---- 273
Query: 310 HYGCL 314
GCL
Sbjct: 274 ELGCL 278
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 26/241 (10%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP DS T ++ C + HA + G + V V TA+++ Y G ++ +
Sbjct: 158 RP--DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAA 215
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+FD +P +N V+WN MI G + G+ A +LF NR
Sbjct: 216 RVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALF---------------------NRMV 254
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ +++++LA L A + G + +H + G ++ ++ V N LI Y+KC +
Sbjct: 255 EEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS-NVSVMNALITMYSKCKRV 313
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +F+++ +R+ VSW ++I G A +G + AV F RMQ +KP+ T +SV+
Sbjct: 314 DLASHVFDEL--DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371
Query: 303 A 303
A
Sbjct: 372 A 372
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 32/228 (14%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DSFT +I +S P +H ++ VYV TAL++MY G + + LF
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+ ER+++TWN MI G G + A LFEEM +V
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIV-------------------- 461
Query: 187 EPSEITILAVLPAIWQNGAVRN-----CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P+E T L+VL A G V + YG + G + ++D + G
Sbjct: 462 -PNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHY-----GTMVDLLGRAGK 515
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
+ A + + ++ L + +++ +H + A E+ +++ ++G
Sbjct: 516 LDEAWAFIQKMPMD-PGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 214/413 (51%), Gaps = 43/413 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ + +A +K+L++ S ++ F+ F+++ L+ CV L
Sbjct: 147 WNTMVIGYAQDGNLHEALWFFKELRR------SGIK--FNEFSFAGLLTACVKSRQLQLN 198
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q H + GF S+V ++ ++++ Y G ++ + + FDE+ +++ W +I+G K
Sbjct: 199 QQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++E A LF EMP +N VSWT ++ GY R + A +P + T + L
Sbjct: 259 GDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCL 318
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A ++R+ + IHGY + I V++ LID Y+K G + ++ ++F I +++
Sbjct: 319 CASASIASLRHGKQIHGYMIRTNVRPNAI-VTSSLIDMYSKSGSLEASERVFR-ICYDKQ 376
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ V W ++IS A HG+G A++ + M K + PNR T + +LNACSH GL
Sbjct: 377 DCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWF 436
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CL+D+LGRAG ++ +P E D + +LG C HG
Sbjct: 437 ESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFE-PDKHIWNAILGVCRIHG 495
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
N E+G++ ++++++ + Y+L+ +I A G++ E+LR +M +R K
Sbjct: 496 NEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNK 548
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 159/344 (46%), Gaps = 65/344 (18%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L++ C G +H + GF+ + ++ L+ MY+ G D+ K+FD++ R
Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------------MN 179
NL +WN M++G VK G L AR +F+ MP R+VVSW ++ GY + +
Sbjct: 112 NLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELR 171
Query: 180 RSNGASTEPSEITILA-----------------VLPAIWQNGAVRNCQLIHGYGE----- 217
RS E S +L VL A + + V +C +I Y +
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 218 --KRGFNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
KR F+ DI + LI YAK G + +A KLF ++ KN VSWT++I+G+
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMP--EKNPVSWTALIAGYVRQ 289
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACS------HGGLHYG-------------- 312
G G A++ F +M + +KP + TF S L A + HG +G
Sbjct: 290 GSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVT 349
Query: 313 -CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
L+DM ++G LE +E++ I + D V+ ++ A + HG
Sbjct: 350 SSLIDMYSKSGSLEASERV-FRICYDKQDCVLWNTMISALAQHG 392
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 44/234 (18%)
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI------------ 252
+++ + IH + + GF + +SN LI Y KCG A K+F+ +
Sbjct: 61 SLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMV 120
Query: 253 -----------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
S+ +++VSW +++ G+A G A+ F+ +++ G+K N
Sbjct: 121 SGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEF 180
Query: 296 TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
+F +L AC + R +L Q + + +++VV+ ++ A + G
Sbjct: 181 SFAGLLTAC------------VKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCG 228
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+E +R EM + + + + A +G A++L R M E+N + +
Sbjct: 229 QMESAKRCFD---EMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSW 279
>gi|449444397|ref|XP_004139961.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510-like [Cucumis sativus]
Length = 391
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 128/383 (33%), Positives = 206/383 (53%), Gaps = 37/383 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D+ +S ++++C L P+LG +HA +K S +V ALV+MY + + KL
Sbjct: 9 LDAHVFSLVLKSCTALRRPHLGIAIHAHSAKSSLLSSPFVACALVDMYGKSLSVTLARKL 68
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGILDGYTRMNRSNGA 184
FDE+P R++V WNVM++ V L A LFE M N S+ I+ G +++ A
Sbjct: 69 FDEIPHRSVVVWNVMLSLYVHANMLFGALQLFEAMDVPPNASSFNAIVAGLSKLEDGFKA 128
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
+P+ IT+LA+LPA ++ + IHG+ + A +++S+ L++
Sbjct: 129 IAFYRQMQQCGLKPNLITLLALLPASVGVASLDLIKQIHGFAMRNDIGA-HLQLSSGLVE 187
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y +CGC+ A +F++++ +++V+W+S+IS A+HG A+ F++M+ ++P+
Sbjct: 188 AYGRCGCLSYAHNVFDNMT--ERDVVAWSSLISAHALHGEASTALNIFQQMESCKVQPDE 245
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+ VL ACSH GL HY CLVD+L RAGRL +A I
Sbjct: 246 ITFIGVLKACSHVGLANEALDYFNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAYDIIR 305
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P +T LLGAC +G +E+ E + + E+E N +YVL+ + A VGR+
Sbjct: 306 EMPVRVT-AKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHE 364
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
+A+R+RR M ER PG S V
Sbjct: 365 EAQRMRREMKERRVKVVPGSSWV 387
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 40/251 (15%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN ++ S + KA Y+Q+QQ L+P + T L+ V ++ +L
Sbjct: 112 FNAIVAGLSKLEDGFKAIAFYRQMQQ------CGLKP--NLITLLALLPASVGVASLDLI 163
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H + +H+ +++ LV Y G L + +FD + ER++V W+ +I+
Sbjct: 164 KQIHGFAMRNDIGAHLQLSSGLVEAYGRCGCLSYAHNVFDNMTERDVVAWSSLISAHALH 223
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE A ++F++M V +P EIT + VL A G
Sbjct: 224 GEASTALNIFQQMESCKV---------------------QPDEITFIGVLKACSHVGLAN 262
Query: 208 NC-----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
++ YG + + + +CL+D ++ G + A + ++ V R +W
Sbjct: 263 EALDYFNRMQRDYGLQASSDHY-----SCLVDVLSRAGRLHEAYDIIREMPV-RVTAKAW 316
Query: 263 TSIISGFAMHG 273
+++ ++G
Sbjct: 317 GALLGACRIYG 327
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 186/342 (54%), Gaps = 35/342 (10%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
A+V Y L ++ LF+ +PERNL +WN MITG ++ GEL +AR +F EMP +NVV
Sbjct: 166 NAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVV 225
Query: 167 SWTGILDGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
SWT ++ GY + S A P+E T + VL A + Q +H
Sbjct: 226 SWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLL 285
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
K + V++ L++ Y+KCG + A K+F+D+ + +++LV W +I+ +A HG G
Sbjct: 286 ISKSVYQDRTF-VASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCG 344
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
A+E FE MQ +G KPN V+++ +L+ACSH GL H+ C
Sbjct: 345 MEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHAC 404
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
LVD+ GRAGRL++A + ++ + + +L G C+ HG++E+G+ +++ + +
Sbjct: 405 LVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAG-CNAHGDLEIGQLAAKELEKEDPE 463
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N G Y+L+ NI A ++ +A R+R M E+ K PG S +
Sbjct: 464 NAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWI 505
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 43/264 (16%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
++F+ + ERN+V+WN +I LV+ G +E AR F+EMP R+V+SWT ++ G R R +
Sbjct: 90 EVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDE 149
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK-RGFNAFD---------IRVSNCLI 233
A + +P + V ++ GY + R AFD + N +I
Sbjct: 150 AR------KVFDRMP---ERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMI 200
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF-ERMQKVGLKP 292
+ + G + A K+F ++ KN+VSWT++I+G+ G ++A++ F E ++ G +P
Sbjct: 201 TGFIQNGELAWARKVFNEMP--EKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARP 258
Query: 293 NRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIA 331
N TF++VL ACS GL G L++M + G L A KI
Sbjct: 259 NEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIF 318
Query: 332 LGIPSEITDVVVRRILLGACSFHG 355
+ D+V+ ++ A + HG
Sbjct: 319 DDVVISQRDLVLWNGMIAAYAHHG 342
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 22/168 (13%)
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGILDGYTRMNRSNGASTE 187
+ ER++VTW +I+G +K G + AR LF+ + ++VV+WT +L GY R+ R A
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAE-- 58
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDI--------RVS-NCLIDTYA 237
+ V+P V +I GYG+ R + A ++ VS N +I
Sbjct: 59 ----RLFEVMPV---KNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALV 111
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+CG + A + F+++ +++++SWT+++ G A G A + F+RM
Sbjct: 112 QCGRVEEARRRFDEMP--KRDVISWTTMVMGLARSGRVDEARKVFDRM 157
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE- 128
T+ ++ C ++ G Q+H +ISK +Q +V +AL+NMY G L + K+FD+
Sbjct: 262 TFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDV 321
Query: 129 -LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ +R+LV WN MI G A LFE+M G +
Sbjct: 322 VISQRDLVLWNGMIAAYAHHGCGMEAIELFEDM---------------------QGLGFK 360
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKCGCIFSA 245
P++++ + +L A G V + ++ + E N+ +R + CL+D + G + A
Sbjct: 361 PNDVSYVELLSACSHAGLVD--EGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEA 418
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVENFER 284
+ + + + + W +++G HG +G+ A + E+
Sbjct: 419 YDFIKQLGTKASSSI-WGGLLAGCNAHGDLEIGQLAAKELEK 459
>gi|357118326|ref|XP_003560906.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510-like [Brachypodium distachyon]
Length = 438
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 202/399 (50%), Gaps = 50/399 (12%)
Query: 58 SHSPLRPLFD-SFTYSF--LIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMY 113
S L PL D SF Y+F +++ L P+ +HA+ K G +V +ALV Y
Sbjct: 36 SDPALPPLSDPSFAYAFPLALKSAAALRVPSAAATIHALAVKCGGLLCSPFVASALVASY 95
Query: 114 VSLGFLKD--SSKLFDELPERNLVTWNVMITGLVKWGELEYA---RSLFEEMP---CRNV 165
+ G + +LFDELP RN W+ MI+ + G++ A L + P C N
Sbjct: 96 GACGPSSPDVARRLFDELPCRNGFVWSAMISVYARSGDVAAAVRALDLVDVAPTASCFNS 155
Query: 166 VSWTGILDG---------YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
V + G Y RM G EP IT+LA++PA GA+ + + +HG+
Sbjct: 156 VIAAVVESGEHPARAIELYRRMR---GLGVEPCLITLLALVPACTALGALNSVREVHGFA 212
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
+ G +A + + LI+ Y +CG + +A ++F+ V+ +++V W+SI+S +A HG+G
Sbjct: 213 VRHGMSA-SCHLGSSLIEAYGRCGSLVAARRVFDK--VDERDVVVWSSIVSAYAFHGLGD 269
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A+ F M+ ++P+ + FL VL AC H G HY CL
Sbjct: 270 VAMSLFRWMELDNVRPDGIMFLGVLKACGHAGHADDALKYFDVFTETYGVEACGDHYSCL 329
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+LGRAGRL QA + +P +T LL AC +G V + E R + E+E GN
Sbjct: 330 VDVLGRAGRLHQAYNVIQTMPVRVT-AKAWGALLAACRKYGEVGLAEVAARALFELEPGN 388
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
G +V + NI +GVG + +AER+RR M+ER + PG S
Sbjct: 389 AGTFVSLANIYSGVGMHAEAERVRRDMEERGVQRSPGSS 427
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 210/413 (50%), Gaps = 54/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T FNT++ Y S ++A Y ++ Q + P D+FTY L++ C L
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQ---RGNEP-----DNFTYPCLLKACTRLKSI 148
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H + K+G ++ V+V +L+NMY G ++ SS +F++L + +W+ M++
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSAR 208
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G LF R + S T + + E +++ L A G
Sbjct: 209 AGMGMWSECLLLF-----RGMCSETNL---------------KAEESGMVSALLACANTG 248
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ IHG+ R + +I V L+D Y KCGC+ AL +F+ + E++N +++++
Sbjct: 249 ALNLGMSIHGF-LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKM--EKRNNLTYSA 305
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+ISG A+HG G++A+ F +M K GL+P+ V ++SVLNACSH GL
Sbjct: 306 MISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEG 365
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGCLVD+LGRAG LE+A + IP E DV+ R L C N+E+G+
Sbjct: 366 KVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIW-RTFLSQCRVRQNIELGQI 424
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++L++ N GDY+L+ N+ + + D R R + + + PG S+V
Sbjct: 425 AAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIV 477
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 218/429 (50%), Gaps = 57/429 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ + +N ++ Y K A LL++++ + + D F S T +
Sbjct: 30 NAVTWNAMICGYLGNGDSKSAVLLFEKMS---IRTAVTWIEMIDGFARSGDTETARRF-F 85
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
++ ++L V++ T +V+ Y ++ + ++F+ +P+RN W+ MI+G
Sbjct: 86 DDVPSELRNVVTW----------TVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISG 135
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITI 193
K G ++ ARS+F+ +P RN+V+W ++ GY + S A EP E+TI
Sbjct: 136 YCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTI 195
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+VL A Q G + + IH +G N F V N L+D YAKCG + +A +FE
Sbjct: 196 ASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQF---VLNGLVDMYAKCGDLANARLIFEG 252
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
++ +N W S+ISGFA+HG K A+E F RM+ P+ +TFLSVL+AC+HGG
Sbjct: 253 MA--HRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVN 310
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGCL+D+LGRAGR+++A + +P + DVV LLGA
Sbjct: 311 AGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVW-GALLGA 369
Query: 351 CSFHGNVEMGERVTRKVLEME----RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
C H ++EM +RV ++++++ G YVL+ NI A R+ AE++R M +
Sbjct: 370 CRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGF 429
Query: 407 LKFPGRSLV 415
K G S +
Sbjct: 430 QKTSGCSSI 438
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 28/255 (10%)
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
+ T+LV MY G + DS K+FD +PERN VTWN MI G + G+ + A LFE+M R
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRT 61
Query: 165 VVSWTGILDGYTRMNRSNGA----STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
V+W ++DG+ R + A PSE+ + V + +G RN ++ G
Sbjct: 62 AVTWIEMIDGFARSGDTETARRFFDDVPSELRNV-VTWTVMVDGYARNAEMEAAREVFEG 120
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ + +I Y K G + A +F+ I V +NLV+W S+ISG+A +G + A+E
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPV--RNLVNWNSLISGYAQNGFSEEALE 178
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL------------HYGC---------LVDMLG 319
F +MQ G +P+ VT SVL+ACS GL H G LVDM
Sbjct: 179 AFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYA 238
Query: 320 RAGRLEQAEKIALGI 334
+ G L A I G+
Sbjct: 239 KCGDLANARLIFEGM 253
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 33/189 (17%)
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+ L+ YAKCG + + K+F+ + +N V+W ++I G+ +G K+AV FE+M
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFD--YMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSI 59
Query: 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
VT++ ++D R+G E A + +PSE+ +VV ++
Sbjct: 60 ----RTAVTWIE--------------MIDGFARSGDTETARRFFDDVPSELRNVVTWTVM 101
Query: 348 LGACSFHGNVEMGERVTRKVLE-MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+ + N EM R+V E M + N + ++++G + + + R + D
Sbjct: 102 VDG--YARNAEM--EAAREVFEGMPQRN---FFAWSSMISGYCKKGNVKEARSIFD---- 150
Query: 407 LKFPGRSLV 415
+ P R+LV
Sbjct: 151 -RIPVRNLV 158
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 210/413 (50%), Gaps = 54/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T FNT++ Y S ++A Y ++ Q + P D+FTY L++ C L
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQ---RGNEP-----DNFTYPCLLKACTRLKSI 148
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H + K+G ++ V+V +L+NMY G ++ SS +F++L + +W+ M++
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSAR 208
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G LF R + S T + + E +++ L A G
Sbjct: 209 AGMGMWSECLLLF-----RGMCSETNL---------------KAEESGMVSALLACANTG 248
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ IHG+ R + +I V L+D Y KCGC+ AL +F+ + E++N +++++
Sbjct: 249 ALNLGMSIHGF-LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKM--EKRNNLTYSA 305
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+ISG A+HG G++A+ F +M K GL+P+ V ++SVLNACSH GL
Sbjct: 306 MISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEG 365
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGCLVD+LGRAG LE+A + IP E DV+ R L C N+E+G+
Sbjct: 366 KVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIW-RTFLSQCRVRQNIELGQI 424
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++L++ N GDY+L+ N+ + + D R R + + + PG S+V
Sbjct: 425 AAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIV 477
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 197/387 (50%), Gaps = 41/387 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T S ++ C L+ G Q+HA ++ + + + +N ALV+MY G ++ +
Sbjct: 251 DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 310
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD +P R++V+ ++ G K +E A+ +F +M +NV++W ++ Y + A
Sbjct: 311 FDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAI 370
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-----AFDIRVSN 230
S P+ T VL A ++ Q H + K GF D+ V N
Sbjct: 371 RLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGN 430
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+D Y K G I K+FE ++ ++ VSW ++I G+A +G K A+ FERM
Sbjct: 431 SLVDMYLKTGSIDDGAKVFERMAA--RDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE 488
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
P+ VT + VL+AC H GL HY C+VD+LGRAG L++AE
Sbjct: 489 NPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 548
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
++ +P+E D V+ LLGAC H NVE+GER ++ E++ N G YVL+ N+ A +
Sbjct: 549 ELIKDMPTE-PDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEM 607
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
G++ D R+RR M +R K PG S +
Sbjct: 608 GKWADVFRVRRSMKDRGVSKQPGCSWI 634
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 147/337 (43%), Gaps = 75/337 (22%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQL----QQIYT------------HSHSPLRPL 65
L +T +N LL Y+ P +A L++ + Q Y H+ LR L
Sbjct: 80 LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFL 139
Query: 66 ---------FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 116
++++++ + C G Q+H ++++ V++ TALV+MY
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC 199
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
D+ ++FD +PERN+V+WN +IT + G + A LF EM TG
Sbjct: 200 ERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMA------TGFF---- 249
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P E+T+ +V+ A A R + +H + KR D+ ++N L+D Y
Sbjct: 250 -----------PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMY 298
Query: 237 AKCG------CIFSALKL------------------FEDISV-----ERKNLVSWTSIIS 267
AKCG CIF ++ ED V KN+++W +I+
Sbjct: 299 AKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIA 358
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
+A +G + A+ F ++++ + P T+ +VLNAC
Sbjct: 359 AYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNAC 395
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 50/331 (15%)
Query: 91 HAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150
H + K ++ LV+ Y LG L+++ ++FD +P RN ++N +++ + G
Sbjct: 40 HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99
Query: 151 EYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-------ASTEPSEITILA-----VLP 198
+ AR+LFE +P + S+ ++ R R + A+ + + A L
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A +R + +HG R +A D+ + L+D YAKC A ++F+ ++ +N
Sbjct: 160 ACAAEKDLRTGEQVHGL-VARSPHADDVHIGTALVDMYAKCERPVDARRVFD--AMPERN 216
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY------- 311
+VSW S+I+ + +G A+ F M G P+ VT SV++AC+ GL
Sbjct: 217 VVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACA--GLAAEREGRQV 274
Query: 312 -----------------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
LVDM + GR +A I +PS VV +L +
Sbjct: 275 HAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR--SVVSETSILAGYAKS 332
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
NVE + V +++E V+ +N+L
Sbjct: 333 ANVEDAQVVFSQMVEKN-------VIAWNVL 356
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 213/416 (51%), Gaps = 56/416 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++N +L +LAD ++A + ++ P+ DS++Y+ ++ C+ S +
Sbjct: 316 FVWNAMLKALALADHGEEALTCLADMGRLGV-------PV-DSYSYAHGLKACIAASASH 367
Query: 86 LGT-----QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L ++HA + G+ H +V T L++ Y LG + + ++F +P+RNLV+W+ M
Sbjct: 368 LPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAM 427
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
I K A +F+EM ++ A P+ ITI++VL A
Sbjct: 428 IGCYAKNERPGDAIQIFQEM-------------------MASDADLVPNSITIVSVLHAC 468
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
A+ +++H Y +RGF+ + V N L+ Y KCGC+ + +F I R+N+V
Sbjct: 469 AGVNALGQGKVLHAYILRRGFDLL-VSVLNALMAMYMKCGCLETGRYIFNWIG-RRRNVV 526
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------- 309
SW S+ISG+ MHG G+ +++ FE M + G+ PN +TF+SVL ACSH GL
Sbjct: 527 SWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESM 586
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C+VD+LGRAGRL++A ++ + + + V LLGAC HG+VE
Sbjct: 587 VEYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGS-LLGACRIHGHVEY 645
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E + ++E N G+YVL+ +I A + L+ +++E K PG S +
Sbjct: 646 AEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWI 701
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 23/210 (10%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
F+S +++T L+ Y +L L + ++FDE P +N+ WN M+ L E E
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGE------E 333
Query: 159 EMPCRNVVSWTGI-LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
+ C + G+ +D Y+ + I A + + VR +H +
Sbjct: 334 ALTCLADMGRLGVPVDSYSYAHGLKA--------CIAASASHLPASARVRE---MHAHAI 382
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
+RG+ V+ LID YAK G + A ++F S+ +NLVSW+++I +A +
Sbjct: 383 RRGYG-LHTHVATTLIDCYAKLGIVSYAERVF--TSMPDRNLVSWSAMIGCYAKNERPGD 439
Query: 278 AVENFERM--QKVGLKPNRVTFLSVLNACS 305
A++ F+ M L PN +T +SVL+AC+
Sbjct: 440 AIQIFQEMMASDADLVPNSITIVSVLHACA 469
>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
Length = 1302
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/452 (28%), Positives = 217/452 (48%), Gaps = 88/452 (19%)
Query: 40 SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99
+P +A L Y +++++ H+ D+FT+ L++ +LS +G LH K GF
Sbjct: 838 NPDQAILAYVEMKRVGFHA--------DNFTFPVLLKAASSLSSCCIGFALHGQAMKTGF 889
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
H +V TAL++MY + G + ++K+F+E+ +++V WN M+ G+++ A LF+
Sbjct: 890 SGHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKLFDN 949
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGAST--------------------------------- 186
MP +++ S+ ++ GY ++ R A +
Sbjct: 950 MPLKDLASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLF 1009
Query: 187 --------------------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
E +T+ VL A G + +H Y + A
Sbjct: 1010 DVMPKKNAVDLFDEMKAGNHEADHLTVALVLSACAHLGWLGKGTEMHVYAQDHRL-ASSP 1068
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
V+ LID YAKCG I +L++F V K++ W +IISG A+HG G AAV+ ++M+
Sbjct: 1069 HVATSLIDMYAKCGTIQRSLEVFYKSQV--KDIYCWNAIISGLALHGYGHAAVKLLDKMR 1126
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
G++P+ +TF+ +L+ACSHG L HYGC+VD+LGRAG L
Sbjct: 1127 DNGIRPDEITFIGLLSACSHGSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFL 1186
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL-EMERGNGGDYVLMYN 383
+ A ++ +P E + ++ LLGAC H ++E GE+V + + + G++++ N
Sbjct: 1187 DPAFQLIKAMPFEPGESIL-GALLGACVIHQDLETGEKVIBLITSKAHHVSDGEFMMFVN 1245
Query: 384 ILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ A G++ +A R R M+E K G S +
Sbjct: 1246 LYASCGQWKEANRWRERMNESGIAKTAGGSTI 1277
>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37310-like [Cucumis sativus]
Length = 635
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 132/469 (28%), Positives = 232/469 (49%), Gaps = 61/469 (13%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQL 51
S++ + +HS +L L + + N L+ FYS D P++ + + +
Sbjct: 122 SNSGLAKEVHSFILR-RGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAM 180
Query: 52 QQIYTH--SHSPLRPLF-----------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98
Y+ S+ + LF ++ T +++ C + G ++H +++
Sbjct: 181 LAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQ 240
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
+ V + A++ +Y G L + +LF+E+PE++ +T+ MI+G + G + A LF
Sbjct: 241 IKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFR 300
Query: 159 EMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRN 208
E + +W ++ G + NR GA P+ +T+ ++LP ++
Sbjct: 301 EQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKG 360
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+ IHGY + ++ +I V+ +ID+YAKCG + A +F+ I + ++L++WTSIIS
Sbjct: 361 GKEIHGYAIRNTYDR-NIYVATAIIDSYAKCGYLHGAQLVFDQI--KGRSLIAWTSIISA 417
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------------------- 308
+A+HG A+ F M G++P++VTF SVL AC+H G
Sbjct: 418 YAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQP 477
Query: 309 --LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HY C+V +L RAG+L A + +P E T V +L GA S G+VE+G+ V +
Sbjct: 478 LVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGA-SVAGDVELGKYVFDR 536
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E+E N G+YV+M N+ + GR+ DA+ +R +M E K PG S +
Sbjct: 537 LFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWI 585
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 53/254 (20%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
Y LI+ C + +G QLHA + ++ + L++ Y G ++D+ +F ++
Sbjct: 5 AYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKI 64
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN---------- 179
P +N+ SW + YT N
Sbjct: 65 PR-------------------------------KNIFSWNALFISYTLHNMHTDLLKLFS 93
Query: 180 ---RSNGASTEPSEITI---LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
SN +P T+ L L +++ N + + +H + +RG +DI V N LI
Sbjct: 94 SLVNSNSTDVKPDRFTVTCSLKALASLFSNSGL--AKEVHSFILRRGLE-YDIFVVNALI 150
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKP 292
Y++C + A +F+ + ++ VSW ++++G++ G + E F M V +KP
Sbjct: 151 TFYSRCDELVLARIMFDRMP--ERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKP 208
Query: 293 NRVTFLSVLNACSH 306
N +T +SVL AC+
Sbjct: 209 NALTAVSVLQACAQ 222
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 220/451 (48%), Gaps = 74/451 (16%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFY----SLADS-------PKKAFLLYKQLQQIYTHSH 59
IH+HL + L N+L+H Y ++AD+ P + + L Y +
Sbjct: 86 IHAHL-AGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQND 144
Query: 60 SP----------LRPLF--DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
P LR F + FT++ L++ + +G Q+HA+ K + VYV +
Sbjct: 145 MPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGS 204
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
AL++MY G + + +FD+L +N V+WN +I G + G+ E +F EM
Sbjct: 205 ALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM------- 257
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG--FNAFD 225
+ NG E + T +V AI GA+ + +H + K G +AF
Sbjct: 258 ------------QRNG--FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF- 302
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
V N ++D YAK G + A K+F+ V++K++V+W S+++ FA +G+G+ AV +FE M
Sbjct: 303 --VGNTILDMYAKSGSMIDARKVFD--RVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEM 358
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRL 324
+K G+ N++TFLS+L ACSHGGL HY +VD+LGRAG L
Sbjct: 359 RKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLL 418
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
A +P + T V LLG+C H N ++G+ V E++ + G VL+YNI
Sbjct: 419 NDALVFIFKMPMKPT-AAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNI 477
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A G++ A R+R++M K P S V
Sbjct: 478 YASTGQWDAAARVRKMMKATGVKKEPACSWV 508
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 134/275 (48%), Gaps = 29/275 (10%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
Y LI C + +HA ++ F V+++ +L+++Y G + D+ ++FD +P
Sbjct: 67 YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
R++ +W +I G YA++ +MP + G+L G R +P+
Sbjct: 127 ARDMCSWTSLIAG--------YAQN---DMPDEAL----GLLPGMLR------GRFKPNG 165
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T ++L A + + + IH K ++ D+ V + L+D YA+CG + A+ +F+
Sbjct: 166 FTFASLLKAAGASASSGIGEQIHALTVKYDWHD-DVYVGSALLDMYARCGRMDMAIAVFD 224
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGL 309
+ E KN VSW ++I+GFA G G+ + F MQ+ G + T+ SV +A + G L
Sbjct: 225 QL--ESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
G V A ++ E+++ + + I D+ +
Sbjct: 283 EQGKWV----HAHMIKSGERLSAFVGNTILDMYAK 313
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 193/364 (53%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G LH K+G ++ V V TA++ MY + + +FD + ++N VTWN MI G
Sbjct: 80 FGDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGY 139
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN- 203
++ G ++ A +F+EMP R+++SWT +++G+ + A E+ + V P
Sbjct: 140 MRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVI 199
Query: 204 ---------GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
GA+ +H + + F ++RVSN LID Y +CGC+ A ++F+++
Sbjct: 200 AALAACANLGALSFGLWVHRFVVSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFDEM-- 256
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F RMQ+ KP+ VTF L ACSH GL
Sbjct: 257 EKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGV 316
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE+A K+ +P + +VV+ LL AC
Sbjct: 317 RYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGS-LLAACR 375
Query: 353 FHGN-VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HGN E+ ER+ +++ E++ +YV++ N+ A G++ A ++RR M K PG
Sbjct: 376 THGNDTELAERMMKRLSELKVKGHSNYVILSNMYAADGQWEGASKMRRKMKGLGLKKQPG 435
Query: 412 RSLV 415
S +
Sbjct: 436 FSSI 439
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 60/258 (23%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+ G +H + F+++V V+ +L+++Y G ++ + ++FDE+ +R +V+WN +I G
Sbjct: 212 SFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGF 271
Query: 145 VKWG----ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200
G L Y R + EE + V++TG L T S + ++
Sbjct: 272 AANGHAHESLVYFRRMQEERFKPDAVTFTGAL-------------TACSHVGLV------ 312
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAF--DIRVS------NCLIDTYAKCGCIFSALKLFEDI 252
+ G R F A D R+S CL+D Y++ G + ALK+ E +
Sbjct: 313 -EEGV-------------RYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESM 358
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312
+ + N V S+++ HG E ERM K R++ L V G +Y
Sbjct: 359 PM-KPNEVVIGSLLAACRTHG---NDTELAERMMK------RLSELKV-----KGHSNYV 403
Query: 313 CLVDMLGRAGRLEQAEKI 330
L +M G+ E A K+
Sbjct: 404 ILSNMYAADGQWEGASKM 421
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 37/378 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT + C + ++H + G + V + A+VN Y ++++ L
Sbjct: 174 MDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHL 233
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD++ R+ VTW MI+G + +L+ A +F+ MP ++ V+WT ++ G+ + + A
Sbjct: 234 FDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTAL 293
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLI 233
P+ +++VL A + G V + +H +R G + F+I + N L+
Sbjct: 294 ELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALV 353
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D Y+KCG + +A+ +F + ++ +SW S+++GF+ +G+GK ++ FE M G++P
Sbjct: 354 DMYSKCGDMTAAMAVFHRMP--ERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPT 411
Query: 294 RVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIAL 332
VTFL+VL ACSH GL HY +D LGR +LE+A +
Sbjct: 412 HVTFLAVLTACSHSGLVSNGRLILESMEDHGVEPRAEHYAAFIDALGRNRQLEEAIEFIK 471
Query: 333 GIPSEITDVVVRR--ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+PS I LLGAC HGN+E+ E V + ++E GN G YV++ NI A G+
Sbjct: 472 DLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQ 531
Query: 391 YVDAERLRRVMDERNALK 408
+ DA R+R +M E+ K
Sbjct: 532 WDDARRVRGLMKEKGLKK 549
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 115/284 (40%), Gaps = 48/284 (16%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L R T LG +HA + K SH ++ LV +Y L + FD+LP +
Sbjct: 41 LLERAISTGDVLRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPHK 100
Query: 133 NLVTWNVMITGLVKWGE-LEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSN------- 182
N ++N ++ L++ + A LF+ MP RN+VS+ ++ R
Sbjct: 101 NAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVA 160
Query: 183 --------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
G T+++V A A R + +HG G + ++N +++
Sbjct: 161 RLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGME-LTVIMANAMVN 219
Query: 235 TYAKCGCIFSALKLFEDISVE-----------------------------RKNLVSWTSI 265
Y+K + A LF+ IS+ K+ V+WT++
Sbjct: 220 AYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTAL 279
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
ISG +G A+E FERM G+ P +SVL AC+ GL
Sbjct: 280 ISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGL 323
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 132/421 (31%), Positives = 197/421 (46%), Gaps = 69/421 (16%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAV-ISKVGFQSHVYVNTALVNMYVSLG 117
S R LFD ++ + +S Y G + A + V+ TA+V+ Y G
Sbjct: 85 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 144
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
L+++ ++FD +PERN V+WN M+ ++ ++ A+ LF MPCRNV SW +L GY +
Sbjct: 145 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQ 204
Query: 178 MN---------------------------RSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
G S E ++ I W N + C
Sbjct: 205 AGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACV 264
Query: 211 L--------------IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L +HG + G+ V N L+ Y KCG + A FE++ E
Sbjct: 265 LSTCADIAALECGMQLHGRLIRAGY-GVGCFVGNALLAMYFKCGNMEDARNAFEEM--EE 321
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+++VSW ++I+G+A HG GK A+E F+ M+ KP+ +T + VL ACSH GL
Sbjct: 322 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 381
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354
HY C++D+LGRAGRL +A + +P E D + LLGA H
Sbjct: 382 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE-PDSTMWGALLGASRIH 440
Query: 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
N E+G K+ E+E N G YVL+ NI A G++ DA ++R +M+ER K PG S
Sbjct: 441 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 500
Query: 415 V 415
+
Sbjct: 501 I 501
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 44/280 (15%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
AL++ YV G + ++ +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V
Sbjct: 72 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 131
Query: 167 SWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG------ 220
+WT ++ GY + NG E V A+ + AV ++ Y ++R
Sbjct: 132 TWTAVVSGYAQ----NGMLEEARR-----VFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 182
Query: 221 -FNAFDIR---VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
FN R N ++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G +
Sbjct: 183 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSE 240
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACS-----------HG-----GLHYGCLVD---- 316
++ F M + G NR F VL+ C+ HG G GC V
Sbjct: 241 ETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALL 300
Query: 317 -MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
M + G +E A + E DVV ++ + HG
Sbjct: 301 AMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 338
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA---- 184
+P R+ VT+NVMI+ G + AR F+ P ++ VSW G+L Y R R A
Sbjct: 1 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 185 --STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
TE I+ A++ Q G + + + R D+ N ++ YA+ G +
Sbjct: 61 NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDM 115
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
A +LF+ V +++ +WT+++SG+A +GM + A F+ M +
Sbjct: 116 VEARRLFDAAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 158
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 193/363 (53%), Gaps = 37/363 (10%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGL 144
LG+ +HA+ K G ++V ALV+ Y G + ++FDELP R+++TWN ++ G
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
V+ G + AR +F+EMP R+ +SW+ ++ GY + A P++ ++
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVV 283
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A + G + + + +H ++ G + V L+D YAKCGC+ A ++F+ +
Sbjct: 284 TALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAALVDMYAKCGCVAVAREVFD--GM 340
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
R+++ +W ++I G A HG+G+ AVE FER GL P VTF+ VLN CS GL
Sbjct: 341 RRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGR 400
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG + +A ++ G+ D V+ +L +C
Sbjct: 401 RYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM-HIAPDPVLWGTILSSCK 459
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HG V++G V K++E++ + G YVL+ I A ++ + +R++M R K G
Sbjct: 460 THGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGW 519
Query: 413 SLV 415
SL+
Sbjct: 520 SLM 522
>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
Length = 502
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 203/409 (49%), Gaps = 55/409 (13%)
Query: 32 LHFYSL---ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
+H Y++ A P A L +L S LRP D ++ ++R C L LG
Sbjct: 72 MHAYNVLLAASPPGTAVELISRLLA------SGLRP--DRYSIPAVLRACAELRDMLLGA 123
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
H + ++G ++V V+ AL++MY G L D++++FDE+PER+ V WN M+TG + G
Sbjct: 124 VFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYARAG 183
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
E LF + +V + + P+ + + A G +
Sbjct: 184 RSEETLELFRKAQIESV-------------DMARDLRAVPNVLNVCA------NEGQLMK 224
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+ IHG + DI V N L+D YAKCG + A +F + V +N++SW+++IS
Sbjct: 225 GREIHGRMVRCFAFDSDIAVGNALVDMYAKCGQVDGAQAVFASMKV--RNVMSWSTLISC 282
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------- 309
+ +HGMGK A+ +E M G+KPN +TF+S+L++CSH GL
Sbjct: 283 YGVHGMGKEALRIYEEMVSRGVKPNCITFISILSSCSHSGLVSDGRRIFESMSKVHAVEP 342
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HY C+VD+LGRAG +E+A I +P E + LL AC+ H NV++GE K
Sbjct: 343 TADHYACMVDLLGRAGAIEEAVGIIRKMPME-PGASLWGALLSACATHNNVDVGEVAAYK 401
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ E+E GN +YV + I +GR +R M E +K PG S V
Sbjct: 402 LFELEEGNASNYVTLCGIYDAIGRSDSVSGIRSRMRELGMVKTPGCSWV 450
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 193/363 (53%), Gaps = 37/363 (10%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGL 144
LG+ +HA+ K G ++V ALV+ Y G + ++FDELP R+++TWN ++ G
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
V+ G + AR +F+EMP R+ +SW+ ++ GY + A P++ ++
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVV 283
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A + G + + + +H ++ G + V L+D YAKCGC+ A ++F+ +
Sbjct: 284 TALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAALVDMYAKCGCVAVAREVFD--GM 340
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
R+++ +W ++I G A HG+G+ AVE FER GL P VTF+ VLN CS GL
Sbjct: 341 RRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGR 400
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG + +A ++ G+ D V+ +L +C
Sbjct: 401 RYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM-HIAPDPVLWGTILSSCK 459
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HG V++G V K++E++ + G YVL+ I A ++ + +R++M R K G
Sbjct: 460 THGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGW 519
Query: 413 SLV 415
SL+
Sbjct: 520 SLM 522
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 197/388 (50%), Gaps = 44/388 (11%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH----VYVNTALVNMYVSLGFLKD 121
FD TY+ +I C + +G Q+HA I K + + V+ AL+ +Y + +
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT----- 176
+ K+F +P RN++TWN +++G V G +E A+S FEEMP +N+++ T ++ G
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406
Query: 177 -------RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
+ R +G EP + L A GA+ N + +H G+ + + V
Sbjct: 407 DEGLKLFKQMRLDG--FEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYES-SLSVG 463
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N +I YAKCG + +A +F +++ +LVSW S+I+ HG G A+E F++M K G
Sbjct: 464 NAMISMYAKCGVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG 521
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
+ P+R+TFL+VL ACSH GL HY +VD+ RAG A
Sbjct: 522 VFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYA 581
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ +PS+ V LL C HGN+++G ++ ++ N G YVL+ NI A
Sbjct: 582 RIVIDSMPSK-PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYAD 640
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
VGR+ + ++R++M ++ K P S +
Sbjct: 641 VGRWNEVAKVRKLMRDQAVRKEPACSWI 668
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 168/408 (41%), Gaps = 83/408 (20%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT- 80
+ ++ +N ++ Y+ A L++ +++ RP D FT++ ++ V
Sbjct: 109 MRDSVFYNAMITGYAHNGDGHSALELFRAMRR------DDFRP--DDFTFTSVLSALVLF 160
Query: 81 LSYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYV--------SLGFLKDSSKLFDELPE 131
+ Q+H + K G V AL+++YV S + + KLFDE+P+
Sbjct: 161 VGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPK 220
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----- 186
R+ +TW MITG V+ +L AR +FE M +W ++ GY A T
Sbjct: 221 RDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKM 280
Query: 187 -----EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN---AFDIRVSNCLIDTYAK 238
+ +IT ++ A G+ + + +H Y K N +F + VSN LI Y K
Sbjct: 281 RFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCK 340
Query: 239 CGCIFSALKLFEDISVER-----------------------------KNLVSWTSIISGF 269
+ A K+F + V KNL++ T +ISG
Sbjct: 341 NNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGL 400
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HGGL-HYG----- 312
A +G G ++ F++M+ G +P F L ACS H L H G
Sbjct: 401 AQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSL 460
Query: 313 ----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
++ M + G +E AE + + +PS D+V ++ A HG+
Sbjct: 461 SVGNAMISMYAKCGVVEAAESVFVTMPS--VDLVSWNSMIAALGQHGH 506
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 41/309 (13%)
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+L +HA + GF+ + L+ MY L + +LF+E+P + + +IT
Sbjct: 30 SLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAY 89
Query: 145 VKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGA----------STEPSEIT 192
G LE R +F P R+ V + ++ GY + A P + T
Sbjct: 90 CALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFT 149
Query: 193 ILAVLPA-IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK--------CGCIF 243
+VL A + G + C +H K G V N L+ Y K C +
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMV 209
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLN 302
SA KLF+++ +++ ++WT++I+G+ + A E FE M + +G + N
Sbjct: 210 SARKLFDEMP--KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG---------AAWN 258
Query: 303 ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
A G +H GC + L ++ LGI D + ++ AC+ G+ +MG++
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMR-----FLGIQ---FDDITYTTIISACANVGSFQMGKQ 310
Query: 363 VTRKVLEME 371
V +L+ E
Sbjct: 311 VHAYILKNE 319
>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 212/420 (50%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ Y + ++A ++Y+ + + L P T LI C G
Sbjct: 161 WGTIIDGYVRVERLREALMMYRLMVS------TGLGP--SEVTMIDLISACGRAMAIVEG 212
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLH V+ K F + +V +++ Y + G + ++ + + ++ + N +I G ++
Sbjct: 213 QQLHCVVVKTSFDCYDFVQATVIHFYSACGRINEACFQLEFGMKDHVASRNALIAGFIRN 272
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
++ AR LF EMP R+V SW+ ++ GYT+ ++ A P+E+T+++V
Sbjct: 273 RIIDQARELFNEMPERDVFSWSTMISGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVF 332
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
AI G ++ + H Y D +S +ID YAKCG I +AL++F I +
Sbjct: 333 SAIAALGTLKEGRWAHEYVHYNSIPLND-NLSASIIDMYAKCGSINTALEVFYQIRDKAS 391
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ W +II G A HG K ++E + +Q+ +K + +TF+ VL+AC H GL
Sbjct: 392 TVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIKLSAITFIGVLSACCHAGLVGLGKSYF 451
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+LG+AGRLE+ E++ +P + DVV+ +LL AC H
Sbjct: 452 KSMKSKYNIDPDIRHYGCMVDLLGKAGRLEEVEELIRSMPMK-ADVVIWGMLLSACKTHR 510
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ +GER + +++ +G +L+ N+ A VGR+ DA +RRVM + PG S V
Sbjct: 511 NITIGERAAENLAKLDPSHGPSRILLSNLYADVGRWEDAFLVRRVMQSHRMHRLPGYSGV 570
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 176/394 (44%), Gaps = 73/394 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ T++ + D +A +YK+++ + + + T + +I C +
Sbjct: 29 YTTMIMGFVKNDFWGEAIKVYKEMRSVGV--------VPNEVTMASVISACCRVGRIWDC 80
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH ++ K+ F V V+T L+NMY + L ++ LFDE+ E+N+V+WNVM+ G K
Sbjct: 81 RMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFDEMQEKNVVSWNVMLNGYSKA 140
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G A+ +FE +P +++VSW I+DGY R+ R A PSE+T++ ++
Sbjct: 141 GFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMMYRLMVSTGLGPSEVTMIDLI 200
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG----------------- 240
A + A+ Q +H K F+ +D V +I Y+ CG
Sbjct: 201 SACGRAMAIVEGQQLHCVVVKTSFDCYDF-VQATVIHFYSACGRINEACFQLEFGMKDHV 259
Query: 241 --------------CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
I A +LF ++ +++ SW+++ISG+ A+E F RM
Sbjct: 260 ASRNALIAGFIRNRIIDQARELFNEMP--ERDVFSWSTMISGYTQSDQPGMALELFHRMV 317
Query: 287 KVGLKPNRVTFLSVLNAC-----------SHGGLHY----------GCLVDMLGRAGRLE 325
G++PN VT +SV +A +H +HY ++DM + G +
Sbjct: 318 TSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLSASIIDMYAKCGSIN 377
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
A ++ I + + V ++ + HG+ ++
Sbjct: 378 TALEVFYQIRDKASTVSPWNTIICGLATHGHAKL 411
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 61/230 (26%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK---WGELEYARSLFEEMPCRNV 165
+++ YV G L D+ KLF+ +P++ V++ MI G VK WGE A +++EM V
Sbjct: 1 MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGE---AIKVYKEMRSVGV 57
Query: 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225
V P+E+T+ +V+ A + G + +C+++HG K F+ F
Sbjct: 58 V---------------------PNEVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGF- 95
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER- 284
+ VS L++ Y + A LF+++ + KN+VSW +++G++ G A E FE
Sbjct: 96 VLVSTNLLNMYCASSSLGEARALFDEM--QEKNVVSWNVMLNGYSKAGFANLAKEVFEMI 153
Query: 285 ------------------------------MQKVGLKPNRVTFLSVLNAC 304
M GL P+ VT + +++AC
Sbjct: 154 PDKDIVSWGTIIDGYVRVERLREALMMYRLMVSTGLGPSEVTMIDLISAC 203
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
+I Y K G + A KLFE + +K VS+T++I GF + A++ ++ M+ VG+
Sbjct: 1 MISGYVKSGNLDDARKLFE--VMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVV 58
Query: 292 PNRVTFLSVLNACSHGGLHYGC 313
PN VT SV++AC G + C
Sbjct: 59 PNEVTMASVISACCRVGRIWDC 80
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 197/387 (50%), Gaps = 41/387 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T S ++ C L+ G Q+HA ++ + + + +N ALV+MY G ++ +
Sbjct: 9 DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 68
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD +P R++V+ ++ G K +E A+ +F +M +NV++W ++ Y + A
Sbjct: 69 FDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAI 128
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-----AFDIRVSN 230
S P+ T VL A ++ Q H + K GF D+ V N
Sbjct: 129 RLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGN 188
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
L+D Y K G I K+FE ++ ++ VSW ++I G+A +G K A+ FERM
Sbjct: 189 SLVDMYLKTGSIDDGAKVFERMAA--RDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE 246
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
P+ VT + VL+AC H GL HY C+VD+LGRAG L++AE
Sbjct: 247 NPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 306
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
++ +P+E D V+ LLGAC H NVE+GER ++ E++ N G YVL+ N+ A +
Sbjct: 307 ELIKDMPTE-PDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEM 365
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
G++ D R+RR M +R K PG S +
Sbjct: 366 GKWADVFRVRRSMKDRGVSKQPGCSWI 392
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG------C 241
P E+T+ +V+ A A R + +H + KR D+ ++N L+D YAKCG C
Sbjct: 8 PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARC 67
Query: 242 IFSALKL------------------FEDISV-----ERKNLVSWTSIISGFAMHGMGKAA 278
IF ++ ED V KN+++W +I+ +A +G + A
Sbjct: 68 IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 127
Query: 279 VENFERMQKVGLKPNRVTFLSVLNAC 304
+ F ++++ + P T+ +VLNAC
Sbjct: 128 IRLFVQLKRDSIWPTHYTYGNVLNAC 153
>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like isoform 1 [Cucumis sativus]
Length = 703
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 200/404 (49%), Gaps = 42/404 (10%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
+KA LLY +++ H + L + D L+ C G Q H++I K GF
Sbjct: 307 RKALLLYSAMRKSDLHPNEVL--IVD------LLSACGQSVSIEEGRQFHSLIVKNGFVC 358
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
++ +++ Y + + + + + +L + NVMI G K G ++ AR +F+ MP
Sbjct: 359 FDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMP 418
Query: 162 CRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQL 211
++V SW+ ++ GY + + A EP+EIT+++V AI G + +
Sbjct: 419 EKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRW 478
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
H Y + D +S +ID YAKCG I +AL +F I + + W +II G AM
Sbjct: 479 AHEYVCNKVIPLND-NLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAM 537
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------- 309
HG ++E F +Q+ +K N +TFL VL+AC H GL
Sbjct: 538 HGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIK 597
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
HYGCLVD+LGR GRL +AE+I +P + DVV+ LL + HG VE+GER +
Sbjct: 598 HYGCLVDLLGRVGRLREAEEIVRTMPMK-ADVVIWGTLLASSRTHGEVEIGERAAENLAR 656
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
++ +G VL+ N+ A G + DA +RR + + ++ PG S
Sbjct: 657 LQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYS 700
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 179/410 (43%), Gaps = 100/410 (24%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
LHA++ K+ F V ++T L++MY LKD+ +LF+E+P RN V+WNVM+ G VK G
Sbjct: 215 LHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGL 274
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
++ AR LFE +P R+V SW ++DG+ +M R A P+E+ I+ +L A
Sbjct: 275 VDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSA 334
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFD------------------------------IRVS 229
Q+ ++ + H K GF FD + S
Sbjct: 335 CGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSS 394
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N +I + K G I A ++F+ + K++ SW+++ISG+A + + A++ F M
Sbjct: 395 NVMIVGFTKNGMIDQARQIFD--MMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSK 452
Query: 290 LKPNRVTFLSVLNACSHGGL--------HYGC-------------LVDMLGRAGRLEQAE 328
++PN +T +SV +A + G Y C ++DM + G ++ A
Sbjct: 453 VEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTAL 512
Query: 329 KIALGIPSEITDV-------------------------VVRRIL----------LGACSF 353
+ I + + V + RR + L AC
Sbjct: 513 DVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCH 572
Query: 354 HGNVEMGERV--TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
G VE+GER + K N Y + ++L VGR +AE + R M
Sbjct: 573 AGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTM 622
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 46/274 (16%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C + S + G Q+HA++ K GF S+ ++ +L+NMYV G L + LFD +
Sbjct: 68 LKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDS 127
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSN 182
V+ N+M++G VK +LE AR LF +MP R VS+T ++ G + + RS
Sbjct: 128 VSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSA 187
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHG-------YG------------------- 216
G + P+E+T+ +V+ A G + NC+++H +G
Sbjct: 188 GVA--PNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLK 245
Query: 217 -EKRGFNAFDIRVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
KR FN +R + N ++ Y K G + A +LFE I +++ SW +I GF
Sbjct: 246 DTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERI--PERDVFSWAIMIDGFVQM 303
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+ A+ + M+K L PN V + +L+AC
Sbjct: 304 KRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQ 337
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 30/165 (18%)
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
+N +S+ E+++++ L + A+ + Q IH K GFN+ + + N LI+ Y
Sbjct: 49 LNGRPSSSSLDCELSVVSALKYCASSSAISSGQQIHAIVLKYGFNS-NTFILNSLINMYV 107
Query: 238 KCGCIFSALKLFEDISV-----------------------------ERKNLVSWTSIISG 268
KCG + SA LF+ SV + VS+T++I G
Sbjct: 108 KCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILG 167
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGC 313
A + A+E F+ M+ G+ PN VT SV++ACSH G + C
Sbjct: 168 LAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNC 212
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 235/473 (49%), Gaps = 63/473 (13%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQ------- 53
S S + H+ L+TT +L+ H + N LL + A S A L+ Q+ Q
Sbjct: 25 SCKSMQQIKQTHAQLITT-ALISHPVSANKLLKLAACA-SLSYAHKLFDQIPQPDLFIYN 82
Query: 54 --IYTHSHSP---------LRPLF-------DSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
I HS SP R L + +++ F C G Q+
Sbjct: 83 TMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAV 142
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
KVG +++V+V AL+ MY G + +S K+F +R+L +WN +I V G + A+
Sbjct: 143 KVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKE 202
Query: 156 LFEEMPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITILAVLPAIWQNGA 205
LF+ M R+VVSW+ I+ GY ++ ++ +P+E T+++ L A A
Sbjct: 203 LFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVA 262
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IH Y K G + R+ +ID YAKCG I SA ++F + V++K + W ++
Sbjct: 263 LDQGKWIHAYIGK-GEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWL-WNAM 320
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I GFAMHGM A+ FE+M+ + PN+VTF+++LNACSHG +
Sbjct: 321 IGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYA 380
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HYGC+VD+L R+G L++AE + +P DV + LL AC + ++E G R+
Sbjct: 381 ITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMA-PDVAIWGALLNACRIYKDMERGYRI 439
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD-ERNALKFPGRSLV 415
R + M+ + G +VL+ NI + GR+ +A LR + R+ K PG S +
Sbjct: 440 GRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSI 492
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 193/363 (53%), Gaps = 37/363 (10%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGL 144
LG+ +HA+ K G ++V ALV+ Y G + ++FDELP R+++TWN ++ G
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
V+ G + AR +F+EMP R+ +SW+ ++ GY + A P++ ++
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVV 283
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A + G + + + +H ++ G + V L+D YAKCGC+ A ++F+ +
Sbjct: 284 TALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAALVDMYAKCGCVAVAREVFD--GM 340
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
R+++ +W ++I G A HG+G+ AVE FER GL P VTF+ VLN CS GL
Sbjct: 341 RRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGR 400
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG + +A ++ G+ D V+ +L +C
Sbjct: 401 RYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM-HIAPDPVLWGTILSSCK 459
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HG V++G V K++E++ + G YVL+ I A ++ + +R++M R K G
Sbjct: 460 THGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGW 519
Query: 413 SLV 415
SL+
Sbjct: 520 SLM 522
>gi|357130868|ref|XP_003567066.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Brachypodium distachyon]
Length = 433
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 207/414 (50%), Gaps = 59/414 (14%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP--N 85
+N L Y S + A + + + H D +T+ ++ P +
Sbjct: 52 WNALTRAYLRHGSSRSALCVAAHMFRCAAHP--------DRYTFPLALKAAAQGEPPISS 103
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
L Q HA +K G H + +AL++ Y G L + ++FDE P R L +WN +I+GL
Sbjct: 104 LRRQFHAAAAKRGLARHPFTESALISCYSKAGDLDAARRVFDENPHRGLGSWNAIISGLS 163
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ GE + +LF +M VV P ++T+++++ + G
Sbjct: 164 QAGESKEPLALFVKMRRCGVV---------------------PDDLTMVSLVSSCCAVGD 202
Query: 206 VRNCQLIHGYG-EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + +H + + + D+ +SN LID YAKCG A ++FE + + +++ SWT+
Sbjct: 203 IGLVEQLHKCMLQCKHSSRLDVTLSNALIDMYAKCGRTDLAGRVFERMPL--RDVSSWTT 260
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I+G A HG + A++ F+ M+ G+ PNRVT L+VL+AC+H GL
Sbjct: 261 MITGLATHGEEQRALKKFDEMKSEGVPPNRVTMLAVLSACAHRGLVDTGMGLLKQMEDGE 320
Query: 310 --------HYGCLVDMLGRAGRLEQAEK-IALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HYGCLVD+LGR G ++ A + +P E +VV+ LLGAC HGNV +G
Sbjct: 321 IKVAPTVEHYGCLVDLLGRVGWVDDARALVEHRMPME-ANVVIWGTLLGACEKHGNVSVG 379
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSL 414
E ++ E E N G YV++ N+ A G + + ER+R++M R KFPG SL
Sbjct: 380 EWAAERLQEAEPWNDGVYVVLSNVYAAAGMWGEVERVRKMMSGRKVTKFPGCSL 433
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 215/432 (49%), Gaps = 61/432 (14%)
Query: 10 RIHSHLLTTNSLLHHTLLFN--TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP--L 65
+I++H+L T L + FN ++ Y+ +SP+ A +Y + LR L
Sbjct: 45 QIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSM----------LRAGVL 94
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D +T +++ LG Q+H+ K+G QS+ Y + +N+Y G + K+
Sbjct: 95 PDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKV 154
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FDE E L +WN +I+GL + G A +F +M + +G
Sbjct: 155 FDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDM-------------------KRHG-- 193
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFS 244
EP IT+++V+ A G + +H Y + N + I +SN LID Y KCG +
Sbjct: 194 FEPDGITMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDL 253
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F ++E +N+ SWTS+I G+AMHG K A+ F M++ G+KPN VTF+ VL+AC
Sbjct: 254 AYEVFA--TMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSAC 311
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
HGG HYGC+VD+LGRAG + A ++ +P + + V
Sbjct: 312 VHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMK-PNSV 370
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
V L+GAC HGNV+M E V + +E N G YV++ NI A G + + ER+R M
Sbjct: 371 VWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMK 430
Query: 403 ERNALKFPGRSL 414
E K P S+
Sbjct: 431 EGRLAKIPAYSI 442
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 138/495 (27%), Positives = 227/495 (45%), Gaps = 114/495 (23%)
Query: 22 LHHTLLF--NTLLHFYSLADSPKKAFLLY--KQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77
LHH F NT++ Y+ A Y K L + +H +T+ LI+
Sbjct: 66 LHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNH---------YTFPLLIKV 116
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG-------------------- 117
C + G + HA I K GF S ++ +L+ MY G
Sbjct: 117 CTDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSY 176
Query: 118 ------FLKD-----SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
++K+ + K+F+E+P+R++++WN +I G V G+L+ A LFE +P R+ V
Sbjct: 177 NSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAV 236
Query: 167 SWTGILDGYTRMNRSN-------------------------------------------- 182
SW ++DG R+ +
Sbjct: 237 SWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVE 296
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
G P+E T+++VL A G + +H + D+ + CL+ YAKCG +
Sbjct: 297 GREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKP-DVLLLTCLLTMYAKCGAM 355
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +F+++ V +++VSW S+I G+ +HG+G A+E F M+K G +PN TF+SVL+
Sbjct: 356 DLAKGVFDEMPV--RSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLS 413
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC+H G+ HYGC+VD+L RAG +E +E++ +P +
Sbjct: 414 ACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGS 473
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+ +L G CS H + E+GE V ++ +E+E + G Y+L+ N+ A GR+ D E +R +
Sbjct: 474 AIWGALLSG-CSNHLDSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLM 532
Query: 401 MDERNALKFPGRSLV 415
+ E+ K SLV
Sbjct: 533 IKEKGLQKEAASSLV 547
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 203/372 (54%), Gaps = 48/372 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
++ T+ ++ C Y ++G +H + K F + V+ AL++MYV G L + ++F
Sbjct: 131 NAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVF 190
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DEL E+++V+W +I+GLV+ + A LF++M +S+G
Sbjct: 191 DELAEKDIVSWTSIISGLVQCNCPKEALELFQDM-------------------QSSG--I 229
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
EP I + +VL A + GA+ + +H + +++ +DI++ ++D YAKCGCI ++
Sbjct: 230 EPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIK-WDIQIGTAMVDMYAKCGCIEMSM 288
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++F + KN+++W ++++G AMHG +E FE M +VG++PN VTFL++L AC H
Sbjct: 289 QIFN--GMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCH 346
Query: 307 GGL-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
GL HYGC+VD+L RA L++A ++ +P DV +
Sbjct: 347 CGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMS-PDVRI 405
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
LL AC +GN E+ + + + +E++ + G YVL+ NI A R+ D R+RR+M E
Sbjct: 406 MGALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKE 465
Query: 404 RNALKFPGRSLV 415
+ K PG +++
Sbjct: 466 KGIKKPPGSTVI 477
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 180/363 (49%), Gaps = 62/363 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN L+ Y++ D PK AFL+Y++ I P D FT+ ++++C G
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRR---IVKDGFLP-----DMFTFPAVLKSCAKFVGIGEG 53
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H VI K+GF ++YV +LV+ Y D+S++FDE+ R++V+W +I+G V+
Sbjct: 54 RQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRA 113
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A LF M EP+ T ++VL A + G +
Sbjct: 114 GLFDEAVGLFLRM------------------------DVEPNAATFVSVLVACGRKGYLS 149
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IHG K F + VSN L+D Y KCGC+ A ++F++++ K++VSWTSIIS
Sbjct: 150 VGKGIHGLSFKSAFGV-GLEVSNALMDMYVKCGCLPGAKQVFDELA--EKDIVSWTSIIS 206
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------------- 312
G K A+E F+ MQ G++P+ + SVL+AC+ G L YG
Sbjct: 207 GLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKW 266
Query: 313 ------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN----VEMGER 362
+VDM + G +E + +I G+P + +V+ LL + HG+ +E+ E
Sbjct: 267 DIQIGTAMVDMYAKCGCIEMSMQIFNGMPHK--NVLTWNALLNGLAMHGHAYKVLELFEE 324
Query: 363 VTR 365
+ R
Sbjct: 325 MVR 327
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 203/414 (49%), Gaps = 68/414 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D + SF + +C L + + LH+ ++G VY+ A V+ Y + + + +LF
Sbjct: 75 DHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAERLF 134
Query: 127 DELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR------- 177
+ + ++VTW M+ G + G++E AR F+ MP RNVVSW +L Y
Sbjct: 135 SDTSKDVADVVTWTTMVAGHARAGDVERARWFFDAMPERNVVSWNAMLGAYASAGMLSEA 194
Query: 178 ------MNRSNGASTE----------------------------PSEITILAVLPAIWQN 203
M+ N A+ P+E +++V+ A Q
Sbjct: 195 RKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQL 254
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
++ + +H Y ++ + + ++ ++D Y KCGCI +A+++F + V +N+ SW
Sbjct: 255 RSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPV--RNIYSWN 312
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
S+I+G AM+G A+ F +MQ G++PN +TF+ +L ACSH GL
Sbjct: 313 SMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRMVND 372
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HYG +VD+LGRAG +++A +P E + L GAC+ HG VE+GE
Sbjct: 373 FGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVE-PHPGLWGALAGACNIHGEVELGE 431
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +K++E+E +G Y+L+ NI R+ D +RR++ ER K G ++V
Sbjct: 432 EIAKKLIELEPRHGSRYILLSNIYGTSSRWEDMATVRRLIKERKVSKGTGNAVV 485
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 205/384 (53%), Gaps = 42/384 (10%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
HS + P D++ + +++ C + ++H+ + K+GF S V L+ +Y G
Sbjct: 120 HSSVLP--DNYVITSVLKACGL----DECREIHSQVLKLGFGSSRSVGLKLMEIYGKSGE 173
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L D+ K+FDE+P+R+ V VMI + G ++ A LF+++ ++ V WT ++DG R
Sbjct: 174 LADAKKVFDEMPDRDQVVATVMINCYSECGCIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 179 NRSNGASTEPSEITI-LAVLPA----IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
N A E+ + + LPA W +GA +H + E + + V N LI
Sbjct: 234 REMNKALELFREMQLSVFYLPARIWVRWSSGAG-----VHSFVENQKMELSNF-VGNALI 287
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ Y++CG I A ++F+ + K+++S+ ++ISG AMHG A+ F M G +PN
Sbjct: 288 NMYSRCGDINVAKRVFK--GMRDKDVISYNTMISGLAMHGASVEAINVFRDMVNRGFRPN 345
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
+VT +++LNACSHGGL HYGC+VD+LGR GRLE+A +
Sbjct: 346 QVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEHYGCIVDLLGRVGRLEEAYRFI 405
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+ E D ++ LL AC HGN+E+GE++ +++ E E + G YVL+ +I A G++
Sbjct: 406 ENMLIE-PDHIMLGALLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSHIYASSGKW 464
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
++ +R M E K PG S +
Sbjct: 465 KESTEIRESMRESGIEKEPGCSTI 488
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 67/261 (25%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG----------ASTEPSEITILAVLPA 199
++YA +F + NV +T ++DG+ RS +S P I +VL A
Sbjct: 77 IDYAYDVFRYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHSSVLPDNYVITSVLKA 136
Query: 200 IWQNGAVRNCQLIH------GYGEKRG---------------------FNAFDIR---VS 229
+ C+ IH G+G R F+ R V+
Sbjct: 137 C----GLDECREIHSQVLKLGFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVA 192
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KV 288
+I+ Y++CGCI AL+LF+D+ + K+ V WT++I G + A+E F MQ V
Sbjct: 193 TVMINCYSECGCIKEALELFQDVKI--KDTVCWTAMIDGLVRNREMNKALELFREMQLSV 250
Query: 289 GLKPNRVTFLSVLNACSHGGLHY--------------GCLVDMLGRAGRLEQAEKIALGI 334
P R+ + S G+H L++M R G + A+++ G+
Sbjct: 251 FYLPARIW----VRWSSGAGVHSFVENQKMELSNFVGNALINMYSRCGDINVAKRVFKGM 306
Query: 335 PSEITDVVVRRILLGACSFHG 355
+ DV+ ++ + HG
Sbjct: 307 RDK--DVISYNTMISGLAMHG 325
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 190/376 (50%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ Y+ ++++ +LFD +PERN V+WN M+ G V+ +E A+ LF+ MPC
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPC 335
Query: 163 RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG------------ 204
RNV +W ++ GY + + + A + ++ A++ Q+G
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395
Query: 205 --------------AVRNC---------QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A+ C + +HG K G+ V N L+ Y KCG
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCFVGNALLLMYCKCGS 454
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A LF++++ K++VSW ++I+G++ HG G+ A+ FE M++ GLKP+ T ++VL
Sbjct: 455 IEEANDLFKEMA--GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVL 512
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH GL HY C+VD+LGRAG LE+A + +P E
Sbjct: 513 SACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFE-P 571
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D + LLGA HGN E+ E K+ ME N G YVL+ N+ A GR+ D +LR
Sbjct: 572 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 631
Query: 400 VMDERNALKFPGRSLV 415
M ++ K PG S +
Sbjct: 632 RMRDKGVKKVPGYSWI 647
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 145/316 (45%), Gaps = 46/316 (14%)
Query: 106 NTALVNMYVSLG-FLK-----DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
N ALV+ LG F+K ++ + FD + R++V+WN +ITG + GE++ AR LF+E
Sbjct: 211 NWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE 270
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVRNCQLIH 213
P +V +WT ++ GY + A E +E++ A+L Q V + +
Sbjct: 271 SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELF 330
Query: 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273
R + + N +I YA+CG I A LF+ + +++ VSW ++I+G++ G
Sbjct: 331 DVMPCRNVSTW-----NTMITGYAQCGKISEAKNLFDKMP--KRDPVSWAAMIAGYSQSG 383
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACS----------------HGGLHYGCLVD- 316
A+ F M++ G + NR +F S L+ C+ GG GC V
Sbjct: 384 HSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN 443
Query: 317 ----MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
M + G +E+A + + + D+V ++ S HG GE R M+R
Sbjct: 444 ALLLMYCKCGSIEEANDLFKEMAGK--DIVSWNTMIAGYSRHG---FGEEALRFFESMKR 498
Query: 373 -GNGGDYVLMYNILAG 387
G D M +L+
Sbjct: 499 EGLKPDDATMVAVLSA 514
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 13/183 (7%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
A+++ Y+ G + + LFDE+PER+LV+WNVMI G V+ L AR LFE MP R+V
Sbjct: 94 NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153
Query: 167 SWTGILDGYTRMNRSNGAS------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
SW IL GY + + A E ++++ A+L A QN + ++ G E
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWA 213
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
++ NCL+ + K I A + F+ + V +++VSW +II+G+A +G A +
Sbjct: 214 LVSW-----NCLLGGFVKKKKIVEARQFFDSMKV--RDVVSWNTIITGYAQNGEIDEARQ 266
Query: 281 NFE 283
F+
Sbjct: 267 LFD 269
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++S + TC + LG QLH + K G+++ +V AL+ MY G +++++ LF E+
Sbjct: 406 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 465
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+++V+WN MI G + G E A FE M + +P
Sbjct: 466 AGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGL---------------------KPD 504
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ T++AVL A G V + Q H + G + C++D + G + A L
Sbjct: 505 DATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYA-CMVDLLGRAGLLEEAHNL 563
Query: 249 FEDISVERKNLVSWTSIISGFAMHG 273
+++ E + W +++ +HG
Sbjct: 564 MKNMPFEPDAAI-WGTLLGASRVHG 587
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 190/376 (50%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ Y+ ++++ +LFD++PERN V+WN M+ G V+ +E A+ LF+ MPC
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPC 340
Query: 163 RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG------------ 204
RNV +W ++ GY + + + A + ++ A++ Q+G
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 205 --------------AVRNC---------QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A+ C + +HG K G+ V N L+ Y KCG
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCFVGNALLLMYCKCGS 459
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A LF++++ K++VSW ++I+G++ HG G+ A+ FE M++ GLKP+ T ++VL
Sbjct: 460 IEEANDLFKEMA--GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH GL HY C+VD+LGRAG LE A + +P E
Sbjct: 518 SACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE-P 576
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D + LLGA HGN E+ E K+ ME N G YVL+ N+ A GR+ D +LR
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636
Query: 400 VMDERNALKFPGRSLV 415
M ++ K PG S +
Sbjct: 637 RMRDKGVKKVPGYSWI 652
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 58/285 (20%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
++ Y G + ++ +LFDE P +++ TW M++G ++ +E AR LF++MP RN VSW
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSW 315
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+L GY + R A + V+P C+ ++
Sbjct: 316 NAMLAGYVQGERMEMAK------ELFDVMP----------CR--------------NVST 345
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N +I YA+CG I A LF+ + +++ VSW ++I+G++ G A+ F +M++
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMP--KRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE 403
Query: 289 GLKPNRVTFLSVLNACS----------------HGGLHYGCLVD-----MLGRAGRLEQA 327
G + NR +F S L+ C+ GG GC V M + G +E+A
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
+ + + D+V ++ S HG GE R M+R
Sbjct: 464 NDLFKEMAGK--DIVSWNTMIAGYSRHG---FGEVALRFFESMKR 503
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 36/212 (16%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
+++ Y+ G + + KLFDE+PER+LV+WNVMI G V+ L AR LFE MP R+V
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 167 SWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVR------------- 207
SW +L GY + + A + E ++++ A+L A QN +
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218
Query: 208 ----NCQLIHGYGEKR----------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
NC L+ G+ +K+ N D+ N +I YA+ G I A +LF++
Sbjct: 219 LVSWNC-LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESP 277
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
V+ ++ +WT+++SG+ + M + A E F++M
Sbjct: 278 VQ--DVFTWTAMVSGYIQNRMVEEARELFDKM 307
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
++ Y+ G ++ ++F +P + V++N MI+G ++ GE E AR LF+EMP R++VSW
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWN 130
Query: 170 GILDGYTRMNRSNGASTEPSEI-------TILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
++ GY R NR+ G + E EI + +L QNG V + + + ++
Sbjct: 131 VMIKGYVR-NRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV 189
Query: 223 AFDIRVS--------------------------NCLIDTYAKCGCIFSALKLFEDISVER 256
+++ +S NCL+ + K I A + F+ ++V
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV-- 247
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFE 283
+++VSW +II+G+A G A + F+
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFD 274
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++S + TC + LG QLH + K G+++ +V AL+ MY G +++++ LF E+
Sbjct: 411 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 470
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+++V+WN MI G + G E A FE M + +P
Sbjct: 471 AGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGL---------------------KPD 509
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ T++AVL A G V + Q + + G + C++D + G + A L
Sbjct: 510 DATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYA-CMVDLLGRAGLLEDAHNL 568
Query: 249 FEDISVERKNLVSWTSIISGFAMHG 273
+++ E + W +++ +HG
Sbjct: 569 MKNMPFEPDAAI-WGTLLGASRVHG 592
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
K +K + + ++ WNV I+ ++ G A +F+ MP + VS+ G++ GY R
Sbjct: 50 KSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNG 109
Query: 180 RSNGASTEPSEITILAVLPAIWQ---NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
A E+ ++ W G VRN L D+ N ++ Y
Sbjct: 110 EFELARKLFDEMPERDLVS--WNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGY 167
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
A+ GC+ A +F+ + KN VSW +++S + + + A F+ + L
Sbjct: 168 AQNGCVDDARSVFDRMP--EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL 219
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 200/445 (44%), Gaps = 97/445 (21%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY----------- 113
L DSF++ L+R C +S G LHA ++G + +++ TAL+ Y
Sbjct: 179 LPDSFSFPCLLRACARVSCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGVADAARA 238
Query: 114 --------------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA 153
V+ G + D+ LFD +P+RN+V WNVM+ G VK G+LE A
Sbjct: 239 LFYQIDIPSEVSWTAIIVAYVNNGGIIDARALFDTMPQRNVVHWNVMVDGYVKCGDLEGA 298
Query: 154 RSLFEEMP------C-------------------------RNVVSWTGILDGYTR----- 177
R LF+EMP C R+V SW+ ++ GY +
Sbjct: 299 RRLFDEMPERTATACTSLIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPG 358
Query: 178 -----MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
+ G P E+ ++ ++ A Q G +R I Y K + + V L
Sbjct: 359 EALRTFDEFQGQGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGL 418
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
++ AKCG + A LFE + V +++ S+ S++ G+ +HG AV+ F RM GL P
Sbjct: 419 VNMNAKCGNLERATFLFESMPV--RDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTP 476
Query: 293 NRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKI 330
+ F VL AC H GL HY CLV++LGR G LE A +
Sbjct: 477 DNAVFTIVLTACCHAGLVEEGKKFFDIMKNVYLMVPSGEHYACLVNLLGRCGMLEDAYWL 536
Query: 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390
+ +P + LLG C H N+E+G+ +K+ E+E N G+YV + N+ A + R
Sbjct: 537 IMSMPGK-PHPGAWGALLGGCKLHCNIELGKIAAKKLFEIEPDNAGNYVSLSNMYANIDR 595
Query: 391 YVDAERLRRVMDERNALKFPGRSLV 415
+ D +R M + K GR+LV
Sbjct: 596 WGDVSEVRAEMTGKRITKIAGRTLV 620
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 147/472 (31%), Positives = 236/472 (50%), Gaps = 67/472 (14%)
Query: 4 SNNVTTRIHSHLLTT---------NSLLHHTLLFNTLLHFYSLADS-PKKAFLLYKQLQQ 53
S N + H++L+TT N L + L +L + + L D P+ +Y +
Sbjct: 191 SINQIKQTHANLITTAQITLPVIANKFLKNVAL-ASLTYAHKLFDQIPQPDLFIYNTM-- 247
Query: 54 IYTHSHSP---------LRPLF-------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97
I +HS SP R L + +++ F C G Q+ KV
Sbjct: 248 IKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKV 307
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
G +V+V AL+ M+ G ++D+ +FD +R+ +WN MI V G + A+ LF
Sbjct: 308 GLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELF 367
Query: 158 EEMPCRNVVSWTGILDGYTRM----------NRSNGASTEPSEITILAVLPAIWQNGAVR 207
+EM R+VVSW+ I+ GY ++ ++ + +P+E T+++ L A A+
Sbjct: 368 DEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALD 427
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IH Y + D R+ LID YAKCG I SA +F + V+RK + W ++I
Sbjct: 428 QGKWIHVYIRRDNIKMND-RLLASLIDMYAKCGEIDSASSVFHEHKVKRK-VWPWNAMIG 485
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
GFAMHG + A+ FE+M+ + PN+VTF+++LNACSHG +
Sbjct: 486 GFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGIN 545
Query: 310 ----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
HYGC+VD+L R+G L+ +E++ L +P DV + LL AC + ++E G R+ R
Sbjct: 546 PEIEHYGCMVDLLSRSGHLKDSEEMILSMPMA-PDVAIWGALLNACRIYKDMERGYRIGR 604
Query: 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA--LKFPGRSLV 415
+ E++ + G VL+ NI + GR+ +A R+ R +E N+ K PG S +
Sbjct: 605 IIKEIDPNHIGCNVLLGNIYSTSGRWNEA-RMVREKNEINSDRKKIPGFSSI 655
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 192/380 (50%), Gaps = 37/380 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F + LI C LG QLH++ K G + V+ +L+++Y G L+++ +F
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+ ER++V+W MIT + G + AR F+ M RN ++W +L Y +
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLK 489
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
P +T + + GA + I G+ K G ++ V+N I
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL-ILNVSVANAAITM 548
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCG I A KLF+ ++ K++VSW ++I+G++ HGMGK A + F+ M G KP+ +
Sbjct: 549 YSKCGRISEAQKLFDLLN--GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYI 606
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
++++VL+ CSH GL H+ C+VD+LGRAG L +A+ +
Sbjct: 607 SYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDK 666
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + T V LL AC HGN E+ E + V E++ + G Y+L+ I + G+ D
Sbjct: 667 MPMKPT-AEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDD 725
Query: 394 AERLRRVMDERNALKFPGRS 413
+ ++R++M ++ K PG S
Sbjct: 726 SAQVRKLMRDKGIKKNPGYS 745
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%)
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
+ + H L ++FT+ ++++C L L QL + K F V TALV+M
Sbjct: 123 ETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDM 182
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
+V G++ +S+LF ++ + N M+ G K +++A FE+M R+VVSW ++
Sbjct: 183 FVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMI 242
Query: 173 DGYTRMNRSNGASTEPSEITILAV-LPAIWQNGAVRNCQLIH--GYGEK------RGFNA 223
++ R A E+ V L + ++ C + G+G++ R
Sbjct: 243 AALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQ 302
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D V++ LI+ YAKCG A ++F S++ +N VSWT +I G + +VE F
Sbjct: 303 IDPYVASALIELYAKCGSFKEAKRVFN--SLQDRNSVSWTVLIGGSLQYECFSKSVELFN 360
Query: 284 RMQKVGLKPNRVTFLSVLNAC 304
+M+ + ++ ++++ C
Sbjct: 361 QMRAELMAIDQFALATLISGC 381
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 156/358 (43%), Gaps = 52/358 (14%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERN 133
+R+C + LH + VG S V++ L++ Y+S G L D+ +L ++ E N
Sbjct: 11 LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-----------SN 182
++T N+M+ G K G L A LF+ MP R+V SW ++ GY + R
Sbjct: 71 VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ P+ T V+ + G + G K F D V L+D + +CG +
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWG-DPDVETALVDMFVRCGYV 189
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFA-MHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
A +LF I ER + S+++G+A ++G+ A+E FE M + +
Sbjct: 190 DFASRLFSQI--ERPTIFCRNSMLAGYAKLYGIDH-AIEYFEDMAERDV----------- 235
Query: 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI------TDVVVRRILLGAC---- 351
+ + ++ L ++GR+ + ALG+ E+ D L AC
Sbjct: 236 -------VSWNMMIAALSQSGRVRE----ALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
S ++ +V R + +++ + +Y A G + +A+R+ + +RN++ +
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELY---AKCGSFKEAKRVFNSLQDRNSVSW 339
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 206/405 (50%), Gaps = 56/405 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N L+ Y+ + A LY Q+ + L+P D+FT F+++ C LS
Sbjct: 125 FLWNVLIRAYAWNGPHETAISLYHQMLEY------GLKP--DNFTLPFVLKACSALSTIG 176
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G +H + + G++ V+V ALV+MY G + D+ +FD++ +R+ V WN M+
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYA 236
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G + + SL EM + V P+E T++ V+ +
Sbjct: 237 QNGHPDESLSLCCEMAAKGV---------------------RPTEATLVTVISSSADIAC 275
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + + IHG+G + GF ++ +V LID YAKCG + A LFE + K +VSW +I
Sbjct: 276 LPHGREIHGFGWRHGFQ-YNDKVKTALIDMYAKCGSVKVACVLFE--RLREKRVVSWNAI 332
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I+G+AMHG+ A++ FERM K +P+ +TF+ L ACS G L
Sbjct: 333 ITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCR 391
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C+VD+LG G+L++A + + + D V LL +C HGNVE+ E
Sbjct: 392 INPTVEHYTCMVDLLGHCGQLDEAYDLIRQM-DVMPDSGVWGALLNSCKTHGNVELAEVA 450
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
K++E+E + G+YV++ N+ A G++ RLR++M ++ K
Sbjct: 451 LEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKK 495
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 45/280 (16%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
+ Y+ L+ +C++ G QLHA + ++G ++ + T LVN Y L+++ LFD+
Sbjct: 59 YYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDK 118
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+P+ NL WNV+I G E A SL+ +M +P
Sbjct: 119 IPKGNLFLWNVLIRAYAWNGPHETAISLYHQML---------------------EYGLKP 157
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
T+ VL A + ++IH + G+ D+ V L+D YAKCGC+ A +
Sbjct: 158 DNFTLPFVLKACSALSTIGEGRVIHERVIRSGWER-DVFVGAALVDMYAKCGCVVDARHV 216
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN-----A 303
F+ I V+R + V W S+++ +A +G ++ M G++P T ++V++ A
Sbjct: 217 FDKI-VDR-DAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIA 274
Query: 304 C-SHG----------GLHYG-----CLVDMLGRAGRLEQA 327
C HG G Y L+DM + G ++ A
Sbjct: 275 CLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVA 314
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 193/375 (51%), Gaps = 53/375 (14%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT + ++ + N G +H K+G+ S V V+ +L++MY ++D+ ++F+
Sbjct: 158 FTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 217
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM-NRSNGASTE 187
+ E+++ +WN + + V G DG R+ +R GA +
Sbjct: 218 MREKDIFSWNSIXS----------------------VHEQCGDHDGTLRLLDRMLGAGIQ 255
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYG-----EKRGFNAFDIRVSNCLIDTYAKCGCI 242
P +T+ VLPA A+ + + IHGY K G + D+ + N +ID YAKCG +
Sbjct: 256 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 315
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A +FE + K++ SW +I G+ MHG G A+E F RM +V LKP+ VTF+ VL+
Sbjct: 316 RDAHLVFERMX--NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 373
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH G HY C++DMLGRAG+L++A ++AL +P E +
Sbjct: 374 ACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-AN 432
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
VV R LL AC H + + E ++V E+E + G YVLM N+ VGRY + +R
Sbjct: 433 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHT 492
Query: 401 MDERNALKFPGRSLV 415
M ++N K PG S +
Sbjct: 493 MRQQNVRKTPGCSWI 507
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 42/303 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN ++ + P++ F Y++++ + + P D FT+ I+ C+ +
Sbjct: 27 FNAIISGFITNGFPEEGFEFYQKMR------NEGVMP--DKFTFPCAIKACLDVLEIK-- 76
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
++H ++ K G + V++ +ALVN Y+ G ++ + F+ELP R++V WN M+ G +
Sbjct: 77 -KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 135
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ E +L+ + RMN S PS T+ +L G +
Sbjct: 136 GQFEM------------------VLETFRRMNDE---SVVPSRFTVTGILSVFAVMGDLN 174
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
N ++IHG+ K G+++ + VSN LID Y KC CI AL++FE + K++ SW SI S
Sbjct: 175 NGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMREKDIFSWNSIXS 231
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------CLVDMLGR 320
G + +RM G++P+ VT +VL ACSH L +G +V LG+
Sbjct: 232 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 291
Query: 321 AGR 323
G+
Sbjct: 292 DGK 294
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA--VISKVGFQ----SHVYVNTALVNMYVSLGFLK 120
D T + ++ C L+ G ++H ++S +G V + A+++MY G ++
Sbjct: 257 DLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMR 316
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D+ +F+ + +++ +WN+MI G G A +F M C
Sbjct: 317 DAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRM-CE----------------- 358
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
+P E+T + VL A G V + + + A I C+ID + G
Sbjct: 359 ---VQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAG 415
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
+ A +L + +E N V W ++++ +H
Sbjct: 416 QLDEAYELALTMPIE-ANPVVWRALLAACRLH 446
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KC + AL +F D + E N+ ++ +IISGF +G + E +++M+ G+ P++
Sbjct: 2 YSKCNQMNFALSIFSDPTHE-INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60
Query: 296 TFLSVLNAC 304
TF + AC
Sbjct: 61 TFPCAIKAC 69
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 192/381 (50%), Gaps = 37/381 (9%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D F + LI C LG QLH++ K G + V+ +L+++Y G L+++ +
Sbjct: 359 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 418
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
F + ER++V+W MIT + G + AR F+ M RN ++W +L Y +
Sbjct: 419 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 478
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
P +T + + GA + I G+ K G ++ V+N I
Sbjct: 479 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL-ILNVSVANAAIT 537
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y+KCG I A KLF+ ++ K++VSW ++I+G++ HGMGK A + F+ M G KP+
Sbjct: 538 MYSKCGRISEAQKLFDLLN--GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 595
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+++++VL+ CSH GL H+ C+VD+LGRAG L +A+ +
Sbjct: 596 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID 655
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + T V LL AC HGN E+ E + V E++ + G Y+L+ I + G+
Sbjct: 656 KMPMKPT-AEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSD 714
Query: 393 DAERLRRVMDERNALKFPGRS 413
D+ ++R++M ++ K PG S
Sbjct: 715 DSAQVRKLMRDKGIKKNPGYS 735
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 150/336 (44%), Gaps = 48/336 (14%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFY----SLADSPKKAFLLYKQLQQ--IYTH------- 57
+H L+T L L NTLLH Y +L+D+ + LL +++ + TH
Sbjct: 42 LHGRLVTVG-LASAVFLQNTLLHAYLSCGALSDARR---LLRADIKEPNVITHNIMMNGY 97
Query: 58 ----SHSPLRPLFDSF------TYSFLIR----------TCVTLSYPNLGTQLHAVISKV 97
S S LFD +++ L+ +C L L QL + K
Sbjct: 98 AKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKF 157
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
F V TALV+M+V G++ +S+LF ++ + N M+ G K +++A F
Sbjct: 158 DFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYF 217
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV-LPAIWQNGAVRNCQLIH--G 214
E+M R+VVSW ++ ++ R A E+ V L + ++ C + G
Sbjct: 218 EDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLG 277
Query: 215 YGEK------RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+G++ R D V++ LI+ YAKCG A ++F S++ +N VSWT +I G
Sbjct: 278 WGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFN--SLQDRNSVSWTVLIGG 335
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
+ +VE F +M+ + ++ ++++ C
Sbjct: 336 SLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 158/359 (44%), Gaps = 49/359 (13%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
DS TY+ + C L G QLHA + + Q YV +AL+ +Y G K++ ++
Sbjct: 258 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 317
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGILDG-YTRMNR 180
F+ L +RN V+W V+I G +++ + LF +M + + ++ G + RM+
Sbjct: 318 FNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDL 377
Query: 181 SNG--------ASTEPSEITILAVLPAIWQN-GAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
G S I + L +++ G ++N + + +R DI
Sbjct: 378 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-----DIVSWTS 432
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGL 290
+I Y++ G I A + F+ ++ +N ++W +++ + HG + ++ + M + +
Sbjct: 433 MITAYSQIGNIIKAREFFDGMAT--RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 490
Query: 291 KPNRVTFLSVLNACSHGGLH---------------------YGCLVDMLGRAGRLEQAEK 329
P+ VT++++ C+ G + + M + GR+ +A+K
Sbjct: 491 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 550
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-ERGNGGDYVLMYNILAG 387
+ + + DVV ++ S HG MG++ + +M +G DY+ +L+G
Sbjct: 551 LFDLLNGK--DVVSWNAMITGYSQHG---MGKQAAKTFDDMLSKGAKPDYISYVAVLSG 604
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 215/423 (50%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ S K+A L+K++ + + +RP D T ++ C LG
Sbjct: 166 WNAMISGYAETGSYKEALELFKEMMK------TNVRP--DEGTMVTVLSACAQSRSVELG 217
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I GF S++ + AL+++Y K
Sbjct: 218 RQVHSWIDDHGFGSNLKIVNALIDLYS-------------------------------KC 246
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++E A LFE + C++VVSW ++ GYT MN A P+++TI+++L
Sbjct: 247 GQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSIL 306
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y +K+ NA +R S LID YAKCG I +A ++F S+
Sbjct: 307 PACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTS--LIDMYAKCGDIEAAHQVFN--SM 362
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L SW ++I GFAMHG A + F RM+K G++P+ +TF+ +L+ACSH G
Sbjct: 363 LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR 422
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G ++A+++ +P E D V+ LL AC
Sbjct: 423 HIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPME-PDGVIWCSLLKACR 481
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGN+E+ E R ++++E N G YVL+ NI A G + + ++R +++ + K PG
Sbjct: 482 RHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGC 541
Query: 413 SLV 415
S +
Sbjct: 542 SSI 544
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 178/338 (52%), Gaps = 44/338 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+L Y+L+ P A LY + L L +S+T+ FL+++C
Sbjct: 32 LIWNTMLRGYALSSDPVSALKLYVVMIS--------LGLLPNSYTFPFLLKSCAKSKAFE 83
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G++ +YV+T+L++MY G L+D+ K+FD R++V++ +ITG
Sbjct: 84 EGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYA 143
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G + A+ +F+E+P ++VVSW ++ GY A + P E T++
Sbjct: 144 SSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVT 203
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q+ +V + +H + + GF + ++++ N LID Y+KCG + +A LFE +S
Sbjct: 204 VLSACAQSRSVELGRQVHSWIDDHGFGS-NLKIVNALIDLYSKCGQVETACGLFEGLSC- 261
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K++VSW ++I G+ + K A+ F+ M + G PN VT +S+L AC+H G + G
Sbjct: 262 -KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRW 320
Query: 313 --------------------CLVDMLGRAGRLEQAEKI 330
L+DM + G +E A ++
Sbjct: 321 IHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQV 358
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 50/264 (18%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGILDGYTRMNR 180
+F + E N + WN M+ G + A L+ M N ++ +L +
Sbjct: 22 VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81
Query: 181 SNGASTEPSEITILAVLPAIW----------QNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
+ L P ++ QNG + + + R D+
Sbjct: 82 FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR-----DVVSYT 136
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LI YA G I SA ++F++I V K++VSW ++ISG+A G K A+E F+ M K +
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPV--KDVVSWNAMISGYAETGSYKEALELFKEMMKTNV 194
Query: 291 KPNRVTFLSVLNACS-----------------HGGLHYG-------CLVDMLGRAGRLEQ 326
+P+ T ++VL+AC+ HG +G L+D+ + G++E
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHG---FGSNLKIVNALIDLYSKCGQVET 251
Query: 327 AEKIALGIPSEITDVVVRRILLGA 350
A + G+ + DVV L+G
Sbjct: 252 ACGLFEGLSCK--DVVSWNTLIGG 273
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 192/380 (50%), Gaps = 37/380 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F + LI C LG QLH++ K G + V+ +L+++Y G L+++ +F
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+ ER++V+W MIT + G + AR F+ M RN ++W +L Y +
Sbjct: 430 SSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLK 489
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
P +T + + GA + I G+ K G ++ V+N I
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL-ILNVSVANAAITM 548
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y+KCG I A KLF+ ++ K++VSW ++I+G++ HGMGK A + F+ M G KP+ +
Sbjct: 549 YSKCGRISEAQKLFDLLN--GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYI 606
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
++++VL+ CSH GL H+ C+VD+LGRAG L +A+ +
Sbjct: 607 SYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDK 666
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+P + T V LL AC HGN E+ E + V E++ + G Y+L+ I + G+ D
Sbjct: 667 MPMKPT-AEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDD 725
Query: 394 AERLRRVMDERNALKFPGRS 413
+ ++R++M ++ K PG S
Sbjct: 726 SAQVRKLMRDKGIKKNPGYS 745
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%)
Query: 53 QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
+ + H L ++FT+ ++++C L L QL + K F V TALV+M
Sbjct: 123 ETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDM 182
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
+V G++ +S+LF ++ + N M+ G K +++A FE+M R+VVSW ++
Sbjct: 183 FVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMI 242
Query: 173 DGYTRMNRSNGASTEPSEITILAV-LPAIWQNGAVRNCQLIH--GYGEK------RGFNA 223
++ R A E+ V L + ++ C + G+G++ R
Sbjct: 243 AALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQ 302
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
D V++ LI+ YAKCG A ++F S++ +N VSWT +I G + +VE F
Sbjct: 303 IDPYVASALIELYAKCGSFKEAKRVFN--SLQDRNSVSWTVLIGGSLQYECFSKSVELFN 360
Query: 284 RMQKVGLKPNRVTFLSVLNAC 304
+M+ + ++ ++++ C
Sbjct: 361 QMRAELMAIDQFALATLISGC 381
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 155/358 (43%), Gaps = 52/358 (14%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERN 133
+R+C + LH + VG S V++ L++ Y S G L D+ +L ++ E N
Sbjct: 11 LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-----------SN 182
++T N+M+ G K G L A LF+ MP R+V SW ++ GY + R
Sbjct: 71 VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+ P+ T V+ + G + G K F D V L+D + +CG +
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWG-DPDVETALVDMFVRCGYV 189
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFA-MHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
A +LF I ER + S+++G+A ++G+ A+E FE M + +
Sbjct: 190 DFASRLFSQI--ERPTIFCRNSMLAGYAKLYGIDH-AIEYFEDMAERDV----------- 235
Query: 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI------TDVVVRRILLGAC---- 351
+ + ++ L ++GR+ + ALG+ E+ D L AC
Sbjct: 236 -------VSWNMMIAALSQSGRVRE----ALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
S ++ +V R + +++ + +Y A G + +A+R+ + +RN++ +
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELY---AKCGSFKEAKRVFNSLQDRNSVSW 339
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 197/359 (54%), Gaps = 45/359 (12%)
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
+ +++ + V NT ++ Y G + ++ LF ++ ++++V+WN M+ + G+++
Sbjct: 348 IFNQISIRDVVCWNT-MIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDA 406
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------------STEPSEITILAVLP 198
A +FEEM +N+VSW ++ G T+ NG+ +P + T L
Sbjct: 407 AIKIFEEMKEKNIVSWNSLISGLTQ----NGSYLDALKSFMLMGHEGQKPDQSTFACGLS 462
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
+ A++ + +H K G+ A D+ VSN LI YAKCG I SA LF+DI + +
Sbjct: 463 SCAHLAALQVGKQLHQLVMKSGY-ATDLFVSNALITMYAKCGSISSAELLFKDI--DHFD 519
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------- 309
+VSW S+I+ +A++G G+ A++ F +M+ G+ P+ VTF+ +L+ACSH GL
Sbjct: 520 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFK 579
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HY C+VD+LGRAGRLE+A ++ G+ + + LLGAC HGN
Sbjct: 580 CMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKIN-ANAGIWGALLGACRIHGN 638
Query: 357 VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+E+ + K+LE E +YVL+ N+ A GR+ + R+RR+M E+ A K PG S +
Sbjct: 639 LELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 697
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 48/313 (15%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
A++ YV + ++ LF E+PE+N ++W +I G V+ G+L+ AR L +MP RNV
Sbjct: 268 NAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVA 327
Query: 167 SWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE----KRGFN 222
+ T ++ GY + R + A ++I+I V+ W +I GY + +
Sbjct: 328 AQTAMISGYVQNKRMDDARQIFNQISIRDVV--CWNT-------MIAGYSQCGRMDEALH 378
Query: 223 AF------DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
F DI N ++ +YA+ G + +A+K+FE++ + KN+VSW S+ISG +G
Sbjct: 379 LFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEM--KEKNIVSWNSLISGLTQNGSYL 436
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLV 315
A+++F M G KP++ TF L++C+H L G L+
Sbjct: 437 DALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALI 496
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-RGN 374
M + G + AE + I + DVV L+ A + +GN G + +ME G
Sbjct: 497 TMYAKCGSISSAELLFKDI--DHFDVVSWNSLIAAYALNGN---GREALKLFHKMEVEGV 551
Query: 375 GGDYVLMYNILAG 387
D V IL+
Sbjct: 552 APDEVTFVGILSA 564
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 155/321 (48%), Gaps = 47/321 (14%)
Query: 99 FQSHVYVNT----ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
FQ + NT ++++ + G + D+ +LFD +P+RN+V+WN MI + +E AR
Sbjct: 38 FQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEAR 97
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
LF++MP R++ SWT ++ YTR NG + + +LP W N N ++ G
Sbjct: 98 QLFDKMPTRDLYSWTLMITCYTR----NGELAKAR--NLFNLLPYKW-NPVCCNA-MVAG 149
Query: 215 YGEKRGFN----------AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
Y + R F+ A D+ N ++ Y + G + L+ FE+++ +++VSW
Sbjct: 150 YAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA--ERDVVSWNL 207
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRL 324
++ GF G ++ E FE++ PN V+++++L C R G++
Sbjct: 208 MVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTML--CG------------FARFGKI 249
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+A ++ +P I +VV ++ A + N + E ++ +EM N + + N
Sbjct: 250 AEARRLFDQMP--IRNVVAWNAMIAA--YVQNCHVDEAISL-FMEMPEKNSISWTTVING 304
Query: 385 LAGVGRYVDAERLRRVMDERN 405
+G+ +A +L M RN
Sbjct: 305 YVRMGKLDEARQLLNQMPYRN 325
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 112/294 (38%), Gaps = 67/294 (22%)
Query: 51 LQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110
L+ H +P D T++ + +C L+ +G QLH ++ K G+ + ++V+ AL+
Sbjct: 439 LKSFMLMGHEGQKP--DQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALI 496
Query: 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
MY G + + LF ++ ++V+WN +I G A LF +M V
Sbjct: 497 TMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVA---- 552
Query: 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS- 229
P E+T + +L A G + +G F V
Sbjct: 553 -----------------PDEVTFVGILSACSHVGLI-----------DQGLKLFKCMVQA 584
Query: 230 ----------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGK 276
C++D + G + A +L + + N W +++ +HG + K
Sbjct: 585 YNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKIN-ANAGIWGALLGACRIHGNLELAK 643
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330
A E + +P++ + +Y L +M AGR ++ ++
Sbjct: 644 FAAEKL-----LEFEPHKTS-------------NYVLLSNMQAEAGRWDEVARV 679
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 36/308 (11%)
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTE 187
N +I + G L AR LF+ MP R+V+SWT ++ GY++ ++ + A +
Sbjct: 164 NTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 223
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P ++T+ +VL A G + +H Y + G A DI V N LID Y KCG + AL+
Sbjct: 224 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQA-DIYVGNSLIDMYCKCGMVEKALE 282
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+F ++ K+ VSWTS+ISG A++G +A++ F +M + G++P TF+ +L AC+H
Sbjct: 283 VFH--RMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHA 340
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
GL HYGC+VD+L R+G +++A + +P + DVVV R
Sbjct: 341 GLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPI-VPDVVVWR 399
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
ILL AC HGNV + E T+++LE++ + G+YVL+ N AGV R+ DA ++R +M++ +
Sbjct: 400 ILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSD 459
Query: 406 ALKFPGRS 413
K G S
Sbjct: 460 VQKPSGSS 467
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 138/280 (49%), Gaps = 45/280 (16%)
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
+ ++ ++ + + +H K+GF+S+++V+ AL++MY G L + K+FD + +
Sbjct: 28 ALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLD 87
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
R+LV+WN +I G ++ + + LF+ M N+ + +
Sbjct: 88 RDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANI---------------------KADAV 126
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T++ ++ A G + Y ++ D+ + N LID Y + G + +A KLF++
Sbjct: 127 TMVKIILACSHLGDWEFADSMVKYIKENNLE-IDVYLGNTLIDMYGRLGNLTAARKLFDN 185
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
+ +++++SWTS+I+G++ AV+ F+ M +KP++VT SVL+AC+H G
Sbjct: 186 M--PKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLD 243
Query: 310 ------HY-------------GCLVDMLGRAGRLEQAEKI 330
HY L+DM + G +E+A ++
Sbjct: 244 VGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 283
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 223/455 (49%), Gaps = 63/455 (13%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFY----SLADS-------PKKAFLLYKQLQQIYTHSH 59
IH L + L+ N L+HFY SL D+ P++ + + L Y +
Sbjct: 164 IHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAG 223
Query: 60 ---------------SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104
+RP ++ T + + G LH +++ G V
Sbjct: 224 LADEAWRLFCRMVVVGGMRP--NAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVN 281
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
++ ALV+M+ G ++ + ++FD + +++ +W M+ K G+LE A LF++MP RN
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRN 341
Query: 165 VVSWTGILDGYTRMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
VVSW+ ++ Y+++N+ A +P + T+++VL A Q G + + I+
Sbjct: 342 VVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYE 401
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+ + N LID +AKCG + A KLF++++ +N+VSW ++I A+HG
Sbjct: 402 NYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMA--ERNVVSWNTMIMAHAVHGQ 459
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYG 312
+ A+ FE+++ + P+++TFL +L +CSH GL HY
Sbjct: 460 SEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYA 519
Query: 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
C++D+LG+ G LE+A ++A G+P E D LL AC HGNVE+G V K++E++
Sbjct: 520 CMIDLLGKVGLLEEAFEVARGMPME-ADEAGWGALLNACRMHGNVEIGACVADKLVELDP 578
Query: 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
+ G YVLM I A ++ + LR M +R +
Sbjct: 579 SDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGTV 613
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 168/399 (42%), Gaps = 89/399 (22%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL----- 81
+ T++ + A P +A L++++ + R D+ T+ F ++
Sbjct: 103 MLGTMMRGFLRARLPARALGLFRRVVRD--------RLPADARTFVFAVKAAAAAAESEH 154
Query: 82 -SYPNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
P+ G +H K GF V V ALV+ Y + L D+ K+FDE+PER++V+W
Sbjct: 155 GGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTT 214
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
++ G + G + A LF CR VV P+ +T++A + A
Sbjct: 215 LVDGYARAGLADEAWRLF----CRMVVV----------------GGMRPNAVTLVAAVSA 254
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---- 255
I Q G + ++H Y + G A + + N L+D + KCGC+ A ++F+ + V+
Sbjct: 255 IGQMGLLAFGIMLHKYVTEGGV-ARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYS 313
Query: 256 -------------------------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
R+N+VSW+ +I+ ++ + AV F M G+
Sbjct: 314 WTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGV 373
Query: 291 KPNRVTFLSVLNACSH-GGLHYG---------------------CLVDMLGRAGRLEQAE 328
P T +SVL+AC+ G L G L+DM + G + +A
Sbjct: 374 DPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEAS 433
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
K+ + +VV ++ A + HG E R+ ++
Sbjct: 434 KLFDEMAER--NVVSWNTMIMAHAVHGQSEEAIRLFEQL 470
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 205/416 (49%), Gaps = 41/416 (9%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ Y+ +KA +L+ ++ ++ + L P ++ T + ++ CV +
Sbjct: 366 LWNAMISGYARNGLDEKALILFIEMIKV-----AGLLP--NTTTMASVMPACVHCEAFSN 418
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
+H K+GF+ YV AL++MY +G + S +FD + R+ V+WN MITG V
Sbjct: 419 KESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVL 478
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G A L EM + G +P+ IT++ VLP A+
Sbjct: 479 SGRYSNALVLLHEMQRME----NTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y R A DI V + L+D YAKCGC+ + ++F ++ KN+++W +I
Sbjct: 535 AKGKEIHAYA-IRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP--NKNVITWNVLI 591
Query: 267 SGFAMHGMGKAAVENFERM-QKVG----LKPNRVTFLSVLNACSHGGL------------ 309
MHG G+ A+E F+ M + G KPN VTF++V ACSH GL
Sbjct: 592 MACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMK 651
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY C+VD+LGRAG+LE+A ++ +P+E V LLGAC H NVE+
Sbjct: 652 HDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVEL 711
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
GE + +L +E YVL+ NI + G + A +R+ M + K PG S +
Sbjct: 712 GEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWI 767
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 172/391 (43%), Gaps = 77/391 (19%)
Query: 28 FNTLLHFYSLAD--SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+NT++ +S +D S AF L+ + D T + ++ C L +
Sbjct: 265 WNTMISSFSQSDRFSEALAFFRLMVLEGVE----------LDGVTIASVLPACSHLERLD 314
Query: 86 LGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+G ++HA V+ + +V +ALV+MY + ++ ++FD + R + WN MI+G
Sbjct: 315 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 374
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ G E A LF EM + G+L P+ T+ +V+PA
Sbjct: 375 ARNGLDEKALILFIEM-----IKVAGLL---------------PNTTTMASVMPACVHCE 414
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A N + IHGY K GF D V N L+D Y++ G + + +F+ S+E ++ VSW +
Sbjct: 415 AFSNKESIHGYAVKLGFKE-DRYVQNALMDMYSRMGKMDISETIFD--SMEVRDRVSWNT 471
Query: 265 IISGFAMHGMGKAAVENFERMQKV-----------------GLKPNRVTFLSVLNACSH- 306
+I+G+ + G A+ MQ++ KPN +T ++VL C+
Sbjct: 472 MITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAAL 531
Query: 307 GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
+ G LVDM + G L + ++ +P++ +V+ +
Sbjct: 532 AAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK--NVITWNV 589
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGD 377
L+ AC HG E + + ++ E G GG+
Sbjct: 590 LIMACGMHGKGEEALELFKNMV-AEAGRGGE 619
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 117/255 (45%), Gaps = 39/255 (15%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGF 118
S RP D+F + +++ L G Q+HA K G+ S V V LVNMY G
Sbjct: 86 SGARP--DNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGG 143
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ D K+FD + +R+ V+WN I L ++ + E A F M N+
Sbjct: 144 IGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENM------------- 190
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQL---IHGY----GEKRGFNAFDIRVSNC 231
E S T+++V A G + +L +HGY G+++ F +N
Sbjct: 191 --------ELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF------TNNA 236
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
L+ YAK G + + LFE S +++VSW ++IS F+ A+ F M G++
Sbjct: 237 LMAMYAKLGRVDDSKALFE--SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 294
Query: 292 PNRVTFLSVLNACSH 306
+ VT SVL ACSH
Sbjct: 295 LDGVTIASVLPACSH 309
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 161 PCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQ 210
P R+ SW L TR N A P AVL A+ ++ +
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270
IH K G+ + + V+N L++ Y KCG I K+F+ I+ ++ VSW S I+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRIT--DRDQVSWNSFIAALC 170
Query: 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312
+ A+E F MQ ++ + T +SV ACS+ G+ +G
Sbjct: 171 RFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHG 212
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 141/449 (31%), Positives = 216/449 (48%), Gaps = 70/449 (15%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL-------- 62
+H H+L +N H ++ N+LL Y+ S + A L+ ++ S + +
Sbjct: 96 VHFHVLNSN-FKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQND 154
Query: 63 ----------RPLFD-----SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
R L D FT S L++ C ++ N G Q+HA K G S+V+V +
Sbjct: 155 RASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGS 214
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+LV+MY G+L ++ +FD+L +N V+WN +I G + GE E A +LF
Sbjct: 215 SLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALF---------- 264
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
RM R P+E T A+L + G + + +H + K
Sbjct: 265 --------VRMQREG---YRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGY- 312
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V N L+ YAK G I A K+F+ + + ++VS S++ G+A HG+GK A + F+ M +
Sbjct: 313 VGNTLLHMYAKSGSIRDAEKVFDKLV--KVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIR 370
Query: 288 VGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQ 326
G++PN +TFLSVL ACSH L HY +VD+LGRAG L+Q
Sbjct: 371 FGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQ 430
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A+ +P E T V + LLGA H N EMG ++V E++ G + L+ NI A
Sbjct: 431 AKSFIEEMPIEPT-VAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYA 489
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ D ++R++M + K P S V
Sbjct: 490 SAGRWEDVAKVRKIMKDSGVKKEPACSWV 518
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 152/327 (46%), Gaps = 50/327 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D Y+ L++ C L G +H + F+ + + +L+ MY G L+ + +LF
Sbjct: 73 DRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLF 132
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+P R++V+W MITG + A LF M S+GA
Sbjct: 133 DEMPHRDMVSWTSMITGYAQNDRASDALLLFPRM-------------------LSDGA-- 171
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
EP+E T+ +++ + + IH K G ++ ++ V + L+D YA+CG + A+
Sbjct: 172 EPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHS-NVFVGSSLVDMYARCGYLGEAM 230
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+ + KN VSW ++I+G+A G G+ A+ F RMQ+ G +P T+ ++L++CS
Sbjct: 231 LVFDKLGC--KNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSS 288
Query: 307 GG-------LHY--------------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G LH L+ M ++G + AEK+ + DVV
Sbjct: 289 MGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVK--VDVVSCN 346
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMER 372
+L + HG +G+ ++ EM R
Sbjct: 347 SMLIGYAQHG---LGKEAAQQFDEMIR 370
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/485 (28%), Positives = 228/485 (47%), Gaps = 111/485 (22%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ + L +A + Y +Q+I H+ D+FT+ L++ + S P +G
Sbjct: 18 WNEIIKKHVLNGDAVQAMVTYVNVQEIGFHA--------DNFTFPILLKAAGSWSSPCIG 69
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW---------- 137
LH K GF SHV+V TAL+NMY S + D+ K+F+++P +++V W
Sbjct: 70 LALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYAST 129
Query: 138 ---------------------NVMITG---------------------LVKWG------- 148
N+MI+G +V W
Sbjct: 130 DQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYI 189
Query: 149 ---ELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRSNGASTEPSEITILA 195
++E A LF EMP +N+++W ++ G+ + + + P +T+
Sbjct: 190 QGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTG 249
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A +G+++ +H Y G A V+ LID YAKCG I L++F V
Sbjct: 250 VLSACAHSGSLKKGTEVHIYAIDNGL-ASSPHVTTALIDMYAKCGSIQQGLQVFYKSQV- 307
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K++ W ++ISG A+HG G AA+ F +M+K +P+ +TF+ +L+ACSH GL
Sbjct: 308 -KDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQ 366
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VD+L RA L+ A ++ +P + + ++ LL AC
Sbjct: 367 LFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGEAILGA-LLSACIV 425
Query: 354 HGNVEMGERVTRKVLEMERGN---GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
H ++E+GERV + L RGN G+ ++ N+ A G++ +A + R +M++ +K
Sbjct: 426 HQDLEVGERVVK--LVSSRGNYLSDGELMMFSNLYASCGQWEEANKWREMMNDTGIVKTA 483
Query: 411 GRSLV 415
G S+V
Sbjct: 484 GFSVV 488
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 196/367 (53%), Gaps = 39/367 (10%)
Query: 83 YPNLGTQLHAV--ISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
Y G +AV K+ Q+ V NT ++ YV G +K++ KLF +PERN+++WN +
Sbjct: 270 YAQCGDVENAVELFEKMPEQNLVSWNT-MIAGYVQNGSVKEAFKLFQIMPERNVISWNAV 328
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSE 190
I+G + G++E A LF+ MP NVVSW ++ GY++ ++ A +P+
Sbjct: 329 ISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNT 388
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
T VLPA + H + GF + D+ V N L+ YAKCG I A K+F+
Sbjct: 389 ETFAIVLPACAALAVLEQGNEAHEVVIRSGFQS-DVLVGNTLVGMYAKCGSIEDARKVFD 447
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+ +++ S +++I G+A++G K ++E FE+MQ GLKP+RVTF+ VL+AC H GL
Sbjct: 448 --RMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLV 505
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGC++D+LGRAG ++A + +P + D + LL
Sbjct: 506 DEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIK-PDADMWGSLL 564
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
AC H N+++GE+V + ++ + N YVL+ NI A GR+ D +R M +R K
Sbjct: 565 SACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKK 624
Query: 409 FPGRSLV 415
G S +
Sbjct: 625 KLGCSWI 631
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 51/330 (15%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFY----SLADS-------PKKAFLLYKQLQQIYT-HS 58
+H+H++ T L N L+ Y SL ++ P K + + + Y H
Sbjct: 86 LHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHE 145
Query: 59 HSP-------------LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
H ++P + FT++ ++ C L LG + H I K GF+S+V+V
Sbjct: 146 HGQEALGFFYEMQDVGIQP--NHFTFASILPACTDLEV--LG-EFHDEIVKGGFESNVFV 200
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
LV+MY G ++ + +LFD++P+R++V+WN MI G V+ G +E A LF+E+P R+V
Sbjct: 201 GNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV 260
Query: 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE----KRGF 221
++W ++ GY + A + + +P QN N +I GY + K F
Sbjct: 261 ITWNTMMAGYAQCGDVENA------VELFEKMPE--QNLVSWNT-MIAGYVQNGSVKEAF 311
Query: 222 NAFDIRVS------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
F I N +I +A+ G + ALKLF+ ++ N+VSW ++I+G++ +G
Sbjct: 312 KLFQIMPERNVISWNAVISGFAQNGQVEEALKLFK--TMPECNVVSWNAMIAGYSQNGQA 369
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+ A++ F +MQ V +KPN TF VL AC+
Sbjct: 370 ENALKLFGQMQMVDMKPNTETFAIVLPACA 399
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 40/227 (17%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLF 126
S TY L++ C+ LHA + + F+ + + LV++YV LG L ++ ++F
Sbjct: 64 SSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVF 123
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+P +N+V+W MI + + A F EM
Sbjct: 124 DEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEM---------------------QDVGI 162
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGE------KRGFNAFDIRVSNCLIDTYAKCG 240
+P+ T ++LPA C + GE K GF + ++ V N L+D YAK G
Sbjct: 163 QPNHFTFASILPA---------CTDLEVLGEFHDEIVKGGFES-NVFVGNGLVDMYAKRG 212
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
CI A +LF+ + ++++VSW ++I+G+ +G+ + A++ F+ + K
Sbjct: 213 CIEFARELFDKMP--QRDVVSWNAMIAGYVQNGLIEDALKLFQEIPK 257
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 33/246 (13%)
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T ++L ++ + +L+H + + F DI + N L+ Y K G + A +
Sbjct: 62 PHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARR 121
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-- 305
+F+++ V KN+VSWT++I+ +A H G+ A+ F MQ VG++PN TF S+L AC+
Sbjct: 122 VFDEMPV--KNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDL 179
Query: 306 -----------HGGLHYGC-----LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
GG LVDM + G +E A ++ +P DVV ++
Sbjct: 180 EVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQR--DVVSWNAMIA 237
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+G +E ++ +++ + D + ++AG + D E + + K
Sbjct: 238 GYVQNGLIEDALKLFQEIPKR------DVITWNTMMAGYAQCGDVENAVELFE-----KM 286
Query: 410 PGRSLV 415
P ++LV
Sbjct: 287 PEQNLV 292
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 52/256 (20%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ YS + A L+ Q+Q + ++P ++ T++ ++ C L+ G
Sbjct: 356 WNAMIAGYSQNGQAENALKLFGQMQMV------DMKP--NTETFAIVLPACAALAVLEQG 407
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ H V+ + GFQS V V LV MY G ++D+ K+FD + +++ + + MI G
Sbjct: 408 NEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAIN 467
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + + LFE+M +TG+ +P +T + VL A G V
Sbjct: 468 GCSKESLELFEQM------QFTGL---------------KPDRVTFVGVLSACCHAGLV- 505
Query: 208 NCQLIHGYGEKRGFNAFDIRVS-----------NCLIDTYAKCGCIFSALKLFEDISVER 256
G FDI C+ID + GC A L + + +
Sbjct: 506 ----------DEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPI-K 554
Query: 257 KNLVSWTSIISGFAMH 272
+ W S++S H
Sbjct: 555 PDADMWGSLLSACRTH 570
>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 767
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 211/414 (50%), Gaps = 48/414 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ ++L ++A ++ + T + P R T L+++C L
Sbjct: 236 WNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNR-----VTVIALLKSCAELGCVETS 290
Query: 88 TQLHAVISK----VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+ +H IS + V V TAL++M+ G L + ++FD + +N+V W+ MI G
Sbjct: 291 SWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAG 350
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ E A LF +M +++G G +P+ +T+++V+ A +
Sbjct: 351 YEQGSCPEEALRLFRQM----------LMEG-----NMVGVEVKPNAVTLVSVIAACSRL 395
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA R+ +IH Y G + D R+++ LID AKCG I ++F ++ + +VSW+
Sbjct: 396 GASRSASMIHKYAVATGLDQ-DARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWS 454
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
S+I +HG GK A+E F M+ G +PN +T++SVL+ACSH GL
Sbjct: 455 SMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKD 514
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HY CLVD+LGRAG L++A + L +P + D+ + LL AC HGN ++GE
Sbjct: 515 YGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK-ADLALWGSLLAACHLHGNCKLGE 573
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V +K+L ++ + G +VL+ N+ GR+ D R+R + K PG+S +
Sbjct: 574 IVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFI 627
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 38/305 (12%)
Query: 18 TNSLLHHTLLFNTLLHFYSL-----ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72
T H ++ H+ SL +P+ A + ++Q S ++FT+
Sbjct: 5 TRRWYHCSISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPS--------NNFTFP 56
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
L++ C L Q+HA ++++G + + ALV+ Y G ++++FDE+PE
Sbjct: 57 ALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEG 116
Query: 133 --NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190
++V+W +I+ G ++ A F M R + W +G+ +
Sbjct: 117 SVDVVSWTALISAYSSNGCVDEAFKAFGRM--RWMRGW-------------DGSECCGVD 161
Query: 191 ITILAVLPAIWQNGAVRNC----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ L L + G NC +HG K GF + N ++ Y+ C + A
Sbjct: 162 VVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGF-GVSTHLGNSMVHMYSACKDVGGAW 220
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG---LKPNRVTFLSVLNA 303
++F I +E++++VSW S+ISGF ++G + A+ FE M G ++PNRVT +++L +
Sbjct: 221 RVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKS 280
Query: 304 CSHGG 308
C+ G
Sbjct: 281 CAELG 285
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 200/418 (47%), Gaps = 68/418 (16%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN---------------- 106
R L D + SF + C L + + +H++ ++G VYV
Sbjct: 66 RLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASA 125
Query: 107 -----------------TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
T +V + + G ++ + FD +PE+N+V+WN M+ + G
Sbjct: 126 ERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGM 185
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
L AR LF+ MP RN +W ++ G + + A P+E +++ + A
Sbjct: 186 LPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSA 245
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
Q + + +HGY E+ A ++ ++D Y KCG I A+++F + V +N+
Sbjct: 246 CTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPV--RNI 303
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
SW S+I+G AM+G + A+ F +MQ G++PN +TF+ +L+ACSH GL
Sbjct: 304 YSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYK 363
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HYG +VD+LGR+G + +A +P E + L GAC HG V
Sbjct: 364 MVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVE-PHPGLWGALAGACKIHGEV 422
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E+GE V +K++E+E +G Y+L+ NI A R+ D +RR++ +R K G ++V
Sbjct: 423 ELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
>gi|222623741|gb|EEE57873.1| hypothetical protein OsJ_08529 [Oryza sativa Japonica Group]
Length = 500
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 46/384 (11%)
Query: 61 PLRPLFDSFTYSFLIRTCV-TLSYP---NLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 116
P P+ + T ++ C + S P L +HA + K+ F SH+ ++T LV Y +
Sbjct: 94 PAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFAS 152
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGL-VKWGELEYARSLFEEMPCRNVVSWTGILDGY 175
+ +LFD +P R+ VT+N +I+G G + A +F+ MP + VSWT ++DG
Sbjct: 153 RLPHLALQLFDAMPVRSAVTYNTVISGPHAGTGLVAAAFEVFDGMPAPDKVSWTALIDGC 212
Query: 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD--IRVSNCLI 233
+ R + A ++ A C+ + + R + +R++N LI
Sbjct: 213 VKNGRHDEAID-------------CFRRHASGRCRAGLRHADSRHLRGLERNVRIANSLI 259
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D YA+CG + A ++F + ++ +VSW S+I GFA +G AVE+FE M++ G KP+
Sbjct: 260 DMYARCGQVELARQVFS--GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 317
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
VTF VL ACSHGGL HYGC+VD+LGR+G+LE+A ++
Sbjct: 318 AVTFTGVLTACSHGGLTDEGLRYYDLMRPNYGIAARMEHYGCVVDLLGRSGQLEEAMRVV 377
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P +VV+ G C HG+V M E++ + +LE++ G +YVL+ NI A VG++
Sbjct: 378 TTMPMRPNEVVLGAFFAG-CRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKW 436
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
A ++R +M R K PG S V
Sbjct: 437 DGAGKVRSLMKARGLRKRPGYSAV 460
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 217/423 (51%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + K+A L+K++ + + +RP D T ++ C + LG
Sbjct: 203 WNAMISGYAETGNNKEALELFKEMMK------TNVRP--DESTMVSVVSACAQSASIELG 254
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I GF S++ + AL+++Y+ K
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYI-------------------------------KC 283
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GE+E A LFE + ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 284 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 343
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y KR NA R S LID YAKCG I +A ++F+ S+
Sbjct: 344 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS--LIDMYAKCGDIEAAQQVFD--SI 399
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++L SW ++I GFAMHG AA + F RM+K ++P+ +TF+ +L+ACSH G+
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 459
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G ++AE++ + E D V+ LL AC
Sbjct: 460 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIWCSLLKACK 518
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
+ NVE+GE + ++++E N G YVL+ NI A GR+ + ++R +++++ K PG
Sbjct: 519 MYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGC 578
Query: 413 SLV 415
S +
Sbjct: 579 SSI 581
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 212/449 (47%), Gaps = 87/449 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + L L + +T+ FL+++C
Sbjct: 69 LIWNTMFRGHALSSDPVSALYLYVCMIS--------LGLLPNCYTFPFLLKSCAKSKAFR 120
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G+ +YV+T+L++MYV G L+D+ K+FD+ R++V++ +ITG
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 180
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G + A+ +F+E+P ++VVSW ++ GY + A + P E T+++
Sbjct: 181 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 240
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q+ ++ + +H + + GF + ++++ N LID Y KCG + +A LFE +S
Sbjct: 241 VVSACAQSASIELGRQVHSWIDDHGFGS-NLKIVNALIDLYIKCGEVETACGLFEGLSY- 298
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G
Sbjct: 299 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 357
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGI------------------ 334
H L+DM + G +E A+++ I
Sbjct: 358 IHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMH 417
Query: 335 -------------------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
P +IT V LL ACS G +++G + R + E +
Sbjct: 418 GRANAAFDIFSRMRKNEIEPDDITFVG----LLSACSHSGMLDLGRHIFRSMKEDYKITP 473
Query: 376 G--DYVLMYNILAGVGRYVDAERLRRVMD 402
Y M ++L G + +AE + M+
Sbjct: 474 KLEHYGCMIDLLGHSGLFKEAEEMINTME 502
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 215/432 (49%), Gaps = 61/432 (14%)
Query: 10 RIHSHLLTTNSLLHHTLLFN--TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRP--L 65
+I++H+L T L + FN ++ Y+ +SP+ A +Y + LR L
Sbjct: 45 QIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSM----------LRAGVL 94
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D +T +++ LG Q+H+ K+G QS+ Y + +N+Y G + K+
Sbjct: 95 PDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKV 154
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FDE E L +WN +I+GL + G A +F +M + +G
Sbjct: 155 FDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDM-------------------KRHG-- 193
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFS 244
EP IT+++V+ A G + +H Y + N + I +SN LID Y KCG +
Sbjct: 194 FEPDGITMVSVMCACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDL 253
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F ++E +N+ SWTS+I G+AMHG K A+ F M++ G+KPN VTF+ VL+AC
Sbjct: 254 AYEVFA--TMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSAC 311
Query: 305 SHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
HGG HYGC+VD+LGRAG + A ++ +P + + V
Sbjct: 312 VHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMK-PNSV 370
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
V L+GAC HGNV+M E V + +E N G YV++ NI A G + + ER+R M
Sbjct: 371 VWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMK 430
Query: 403 ERNALKFPGRSL 414
E K P S+
Sbjct: 431 EGRLAKIPAYSI 442
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 200/418 (47%), Gaps = 68/418 (16%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN---------------- 106
R L D + SF + C L + + +H++ ++G VYV
Sbjct: 66 RLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASA 125
Query: 107 -----------------TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
T +V + + G ++ + FD +PE+N+V+WN M+ + G
Sbjct: 126 ERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGM 185
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
L AR LF+ MP RN +W ++ G + + A P+E +++ + A
Sbjct: 186 LPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSA 245
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
Q + + +HGY E+ A ++ ++D Y KCG I A+++F + V +N+
Sbjct: 246 CTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPV--RNI 303
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------- 309
SW S+I+G AM+G + A+ F +MQ G++PN +TF+ +L+ACSH GL
Sbjct: 304 YSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYK 363
Query: 310 ------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
HYG +VD+LGR+G + +A +P E + L GAC HG V
Sbjct: 364 MVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVE-PHPGLWGALAGACKIHGEV 422
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E+GE V +K++E+E +G Y+L+ NI A R+ D +RR++ +R K G ++V
Sbjct: 423 ELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 212/418 (50%), Gaps = 45/418 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ TL+ + +A LY Q+ RP F S ++ C TL G
Sbjct: 347 WGTLIARHEQKGDTAEALKLYSQMLA------DGCRPNISCF--SSVLSACATLQDLRGG 398
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
T++HA K+G ++++V+++L++MY + ++F+ LPE+N V WN +I+G
Sbjct: 399 TRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWN 458
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE-----------PSEITILAV 196
G++ A LF +MP RN VSW ++ GY NR G + P EIT+ +V
Sbjct: 459 GKMVEAEGLFNKMPARNSVSWNTMISGYAE-NRRFGDALNYFYAMLASGHIPGEITLSSV 517
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A ++ +++H K G +I + L D YAK G + S+ ++F +
Sbjct: 518 LLACANLCSLEMGRMVHAEIVKLGIED-NIFMGTALCDMYAKSGDLDSSRRVF--YQMPE 574
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
KN ++WT+++ G A +G + ++ FE M + G+ PN TFL++L ACSH GL
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHY 634
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG L +AE++ + + SE+ D LL ACS +
Sbjct: 635 FETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSEL-DTSSWSSLLSACSTYR 693
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
N E+GER +K+ E+E+ N YVL+ N+ A G++ DA R +M + K G S
Sbjct: 694 NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCS 751
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 62/359 (17%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
LH F ++ + + K AF +++++ +RP + T +I+ CV
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFTVFRKMLTC------SVRP--NVVTLICVIKACVGA 259
Query: 82 SYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
+L + + K F+ + V+ +L+ +Y+ +G + ++FD++ R++V+W +
Sbjct: 260 GEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTAL 319
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSE 190
+ G+L+ AR + + MP RN VSW ++ + + + A P+
Sbjct: 320 LDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNI 379
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+VL A +R IH K G ++ ++ VS+ LID Y KC A ++F
Sbjct: 380 SCFSSVLSACATLQDLRGGTRIHANALKMG-SSTNLFVSSSLIDMYCKCKQCTYAQRVFN 438
Query: 251 DISVERKNLVSWTSIISGFAMHG----------------------MGKAAVEN------- 281
S+ KN V W S+ISG++ +G M EN
Sbjct: 439 --SLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDAL 496
Query: 282 --FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
F M G P +T SVL AC++ C ++M GR+ AE + LGI I
Sbjct: 497 NYFYAMLASGHIPGEITLSSVLLACAN-----LCSLEM----GRMVHAEIVKLGIEDNI 546
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 68/347 (19%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ +V G + + +LF +PE+++V++ M+ L+K G + A L+E P +V +
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFF 214
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T ++ G+ R A S P+ +T++ V+ A G + G K
Sbjct: 215 TAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---------------------- 256
I V N LI Y + G +A ++F+D+ V
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARR 334
Query: 257 -------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+N VSW ++I+ G A++ + +M G +PN F SVL+AC+
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACAT--- 391
Query: 310 HYGCLVDMLG----RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
L D+ G A L+ L + S + D+ + C++ +RV
Sbjct: 392 ----LQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCK---CKQCTY------AQRVFN 438
Query: 366 KVLEMERGNGGDYVLMYNILAGV---GRYVDAERLRRVMDERNALKF 409
+ E + V ++++G G+ V+AE L M RN++ +
Sbjct: 439 SLPE------KNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSW 479
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 216/456 (47%), Gaps = 79/456 (17%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQI-YTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ N+L+ YS A ++A LLY ++ + T +H +T+ F++ C ++
Sbjct: 97 FMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNH---------YTFPFVLSGCTKIAAF 147
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW------- 137
G Q+H + K+G + V++ L++ Y G + K+F+ + ERN+V+W
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207
Query: 138 ------------------NVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGILDGY 175
VM+ LV K G ++ A+ LF+E RN+V + IL Y
Sbjct: 208 ARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNY 267
Query: 176 TRMNRSNGA----------STEPSEITILAVLPAIWQ-----NGAVRNCQLIHGYGEKRG 220
R + A P +T+L+ + A Q G V + +H Y EK G
Sbjct: 268 ARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNG 327
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
D+R++ L+D +A+CG SA+++F ++ +++ +WT+ I AM G G+ A
Sbjct: 328 IPC-DMRLNTALVDMFARCGDPQSAMQVFNKMT--ERDVSAWTAAIGTMAMEGNGEGATG 384
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLG 319
F +M G+KP+ V F+ VL ACSHGG HYGC+VD+LG
Sbjct: 385 LFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLG 444
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
RAG L +A + +P E DVV LL AC H NVEM ++ E+ G +V
Sbjct: 445 RAGLLREAFDLIKSMPMEPNDVVWGS-LLAACRVHKNVEMATYAAERINELAPQRAGVHV 503
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L+ NI A G++ D R+R + E+ K PG S V
Sbjct: 504 LLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSV 539
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A +LF++ L S+I G++ G+G+ A+ + RM +G+ PN TF VL+ C
Sbjct: 82 AFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGC 141
Query: 305 S 305
+
Sbjct: 142 T 142
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 216/451 (47%), Gaps = 82/451 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT+L Y++A A L+ ++ P+ D+ +++ L+ V +
Sbjct: 137 WNTMLEAYAVAGRAGDACALFDRM------------PVRDAGSWNILLAMLVRSGSVDKA 184
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN--------- 138
+L + + V T +V+ G + ++ LFD +PERN+V+WN
Sbjct: 185 RELFGRMP----ERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRN 240
Query: 139 ----------------------VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
+MITG ++ +L+ AR LF+EMP RNVV+WT +++GY
Sbjct: 241 HRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYL 300
Query: 177 RMNRSN----------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
+ +S + P+++T L L A + + +H K F D
Sbjct: 301 KGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQ-VDT 359
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
V + L++ YAKCG + A KLF D+S E K+L+SW II+ +A HG+G A+ +E+MQ
Sbjct: 360 FVGSALMNVYAKCGEVGLARKLF-DLSRE-KDLISWNGIIAAYAHHGVGIEAIHLYEKMQ 417
Query: 287 KVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRL 324
G +PN VT++ +L+ACSH GL HY CL+D+ RAGRL
Sbjct: 418 GNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRL 477
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+ A+++ + + V LLG C+ HGN +G R +++ E N G Y L+ NI
Sbjct: 478 DDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNI 537
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A G++ +A +R M+ R K PG S +
Sbjct: 538 YASAGKWKEAAEIRSEMNNRGLKKQPGCSWI 568
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 7/209 (3%)
Query: 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159
Q +V ++ Y G D+ LFD +P R+ +WN+++ LV+ G ++ AR LF
Sbjct: 131 QRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGR 190
Query: 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ---NGAVRNCQLIHGYG 216
MP R+V++WT ++DG R + A + V+ W +G RN +L
Sbjct: 191 MPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVS--WNAMISGYTRNHRLDEALD 248
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
DI N +I + + + A KLF+++ +N+V+WT++++G+ +
Sbjct: 249 LFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMP--ERNVVTWTTMMNGYLKGKQSE 306
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACS 305
++ F M G++PN+VTFL L+ACS
Sbjct: 307 LSLGLFRGMLMSGIRPNQVTFLGALDACS 335
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 47/244 (19%)
Query: 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
++Y + G+ A + VG + N +V++ + G + D+ KLFD PER++V+W
Sbjct: 19 AVAYVSYGSAA-ATSAAVGLERAQDPNRLIVDL-AAAGRVWDARKLFDGTPERDVVSWTA 76
Query: 140 MITGLVKWGELEYARS--------------------------------LFEEMPCRNVVS 167
+++ + G L ARS LF+ MP RNVVS
Sbjct: 77 LVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVS 136
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILA------VLPAIWQNGAVRNCQLIHGYGEKRGF 221
W +L+ Y R+ A + + +L + ++G+V + + G +R
Sbjct: 137 WNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPER-- 194
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
D+ ++D A+ G + A LF+ S+ +N+VSW ++ISG+ + A++
Sbjct: 195 ---DVMAWTTMVDGVARSGNVDEARLLFD--SMPERNVVSWNAMISGYTRNHRLDEALDL 249
Query: 282 FERM 285
F +M
Sbjct: 250 FTKM 253
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/477 (28%), Positives = 239/477 (50%), Gaps = 84/477 (17%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP------ 61
T +IH+H + N+L + + + +L F+ A SP+ F + + ++TH +P
Sbjct: 40 TKQIHAHAIA-NNLTRFSYISSRILAFF--AASPRGDF---RYAETLFTHMPNPNIFDYN 93
Query: 62 --------------------------LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
+RP +S T++ L+++CVTLS Q+ +
Sbjct: 94 SIITSYTTNSQFDKSLSVFTKMLNMNIRP--NSHTFTTLVKSCVTLSSLE---QVFTLTM 148
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
K G S VY ++++N++ G + + ++FDE RN+V W +++G G + R
Sbjct: 149 KSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRD 208
Query: 156 LFEEMPCRNVVSWTGILDGYTR--------------MNRSNG-ASTEPSEITILAVLPAI 200
+F++MP RN S + ++ GY R + G A + + +++VL A
Sbjct: 209 VFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNAC 268
Query: 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
GA + IH Y E+ G +D+ + LID YAKCG + A K+F+ + V K++
Sbjct: 269 TVMGAFEEGKWIHSYVEENGLE-YDLELGTALIDFYAKCGWVKDAEKVFDKMLV--KDVA 325
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------- 309
+W+++I G A++G K A+E FE+M+KVG KPN VTF+ VL AC+H L
Sbjct: 326 TWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESSRLFGIM 385
Query: 310 -----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
HYGC+VD+L R+G++++A + E D + LL C HG+ E
Sbjct: 386 SEKYNITPSIEHYGCIVDILARSGQVKKALIFINSMHIE-PDGAIWGSLLNGCLMHGHYE 444
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+G++V + ++E + + G YVL+ N+ A +G++ +R++M +R + G S +
Sbjct: 445 LGQKVGKYLIEFDPEHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVVIVYGWSFI 501
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 211/417 (50%), Gaps = 72/417 (17%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P D+ T++ L+R C+ L +L + + S+ ++V YV+ G L +
Sbjct: 153 PRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSY----NSMVAGYVAEGDLAGAR 208
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
LFD + R++VTWN MI+G + G++E AR +F+ MP R+VVSW +LDGY +
Sbjct: 209 NLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEM 268
Query: 184 A------------------------------------------STEPSEITILAVLPAIW 201
A +T P+E T ++VL A
Sbjct: 269 ARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACA 328
Query: 202 QNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
G + + +H ++R D+ + L+ YAKCG + +A ++F S+ K++
Sbjct: 329 NLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFN--SMGEKSVP 386
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------- 309
SW S+I G+ +HG + A+E F M++ G +PN TF+ VL++C+HGGL
Sbjct: 387 SWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRM 446
Query: 310 -----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
H+GC++D+LGRAG LEQ+E + + ++++ + IL+ A N++
Sbjct: 447 VRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALW-GILMSASQTQNNIK 505
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+GE V +K++EM G Y+L+ NI A GR+ D E++R+VM+E+ K G SLV
Sbjct: 506 LGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 23/201 (11%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+L ++P + VTWN ++ ++ G L AR LF+EMP R+VVS+ ++ GY G
Sbjct: 147 RLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAG 206
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAF---DIRVSNCLI 233
A + + + V +I GY ++ F+A D+ N ++
Sbjct: 207 ARN---------LFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSML 257
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKP 292
D YA+ G + A +F+ + ++++VSW I++ +A + + F+ M G P
Sbjct: 258 DGYAQAGDVEMARLVFD--GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVP 315
Query: 293 NRVTFLSVLNACSH-GGLHYG 312
N TF+SVL AC++ G L G
Sbjct: 316 NEKTFVSVLTACANLGDLEKG 336
>gi|224084334|ref|XP_002307262.1| predicted protein [Populus trichocarpa]
gi|222856711|gb|EEE94258.1| predicted protein [Populus trichocarpa]
Length = 558
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 194/387 (50%), Gaps = 58/387 (14%)
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
Y G LH K GF S V + AL++ Y G L LF+ + ER +V+WN +IT
Sbjct: 167 YLGHGMTLHGHAIKKGFASDVSLVNALISTYCKCGDLDSGRFLFEVMSERCVVSWNALIT 226
Query: 143 GL----------VKWGEL-EYAR----SLFEEMP--------CRNVVSWTGILDGYTRMN 179
GL V + ++ EY R +L +P +++ W I+ + +
Sbjct: 227 GLRHLNLQNEALVLFSQMTEYQRPNSVTLLNVLPLCYSHLQGTKDIPVWNAIISVHIQTK 286
Query: 180 RSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
A +P IT+L+++ A Q + + Y +GF D VS
Sbjct: 287 YPEKAVCFFYDLLRMGLQPDNITVLSLVSACAQLNFLSLAHSVMAYVICKGFEK-DSAVS 345
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LID YA+CG I +A KLFE + K+ VSW+ +I+G+ +HG GKAA+E +MQ G
Sbjct: 346 NALIDMYARCGDIVTAKKLFEGLI--EKDAVSWSVMINGYCLHGDGKAALEILSQMQLSG 403
Query: 290 LKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAE 328
+ PN + F ++L+ACSH GL HY CLVD+LGR G L++A
Sbjct: 404 VIPNVIVFSTILSACSHAGLVEQAWMVLNSMVENGISARIEHYACLVDLLGRKGHLKEAY 463
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + V + LLGACS HGNVE+GE ++ + EM+ N YV++ NI A
Sbjct: 464 NVVKKLPGK-PSVTLLESLLGACSVHGNVEIGEEISGLLFEMDADNPVPYVILSNIYAAA 522
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ DA +LR +D R K G SL+
Sbjct: 523 GRWADANKLRSNIDRRRLRKAAGCSLL 549
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 25/238 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ + ++ C L G HA + G S V+ AL+ Y L S KLF
Sbjct: 50 DAVSIVSVLSACSYLEAVLFGKCAHAFSIRKGIDSSPNVSNALLAFYSDCRQLTSSFKLF 109
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
++ RN V+WN +I+G V GE+E A L M V LD
Sbjct: 110 HKMHTRNTVSWNTLISGCVHSGEMEKAVDLGHSMQKEGVA-----LD------------- 151
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+T+++VLP + + +HG+ K+GF A D+ + N LI TY KCG + S
Sbjct: 152 ---LVTLISVLPVYCDRDYLGHGMTLHGHAIKKGF-ASDVSLVNALISTYCKCGDLDSGR 207
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
LFE +S + +VSW ++I+G + A+ F +M + +PN VT L+VL C
Sbjct: 208 FLFEVMS--ERCVVSWNALITGLRHLNLQNEALVLFSQMTEYQ-RPNSVTLLNVLPLC 262
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 24/183 (13%)
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
+ + LFD + RNL+ WNVM++G V+ + + + F EM L G++
Sbjct: 1 MHKAENLFDRISNRNLLLWNVMVSGYVRNCLWDTSLAAFCEMQ----------LGGFS-- 48
Query: 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238
P ++I++VL A AV + H + ++G ++ VSN L+ Y+
Sbjct: 49 ---------PDAVSIVSVLSACSYLEAVLFGKCAHAFSIRKGIDS-SPNVSNALLAFYSD 98
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
C + S+ KLF + +N VSW ++ISG G + AV+ MQK G+ + VT +
Sbjct: 99 CRQLTSSFKLFHKM--HTRNTVSWNTLISGCVHSGEMEKAVDLGHSMQKEGVALDLVTLI 156
Query: 299 SVL 301
SVL
Sbjct: 157 SVL 159
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A LF+ IS +NL+ W ++SG+ + + ++ F MQ G P+ V+ +SVL+AC
Sbjct: 4 AENLFDRIS--NRNLLLWNVMVSGYVRNCLWDTSLAAFCEMQLGGFSPDAVSIVSVLSAC 61
Query: 305 SH 306
S+
Sbjct: 62 SY 63
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 211/417 (50%), Gaps = 72/417 (17%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P D+ T++ L+R C+ L +L + + S+ ++V YV+ G L +
Sbjct: 153 PRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSY----NSMVAGYVAEGDLAGAR 208
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
LFD + R++VTWN MI+G + G++E AR +F+ MP R+VVSW +LDGY +
Sbjct: 209 NLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEM 268
Query: 184 A------------------------------------------STEPSEITILAVLPAIW 201
A +T P+E T ++VL A
Sbjct: 269 ARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACA 328
Query: 202 QNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260
G + + +H ++R D+ + L+ YAKCG + +A ++F S+ K++
Sbjct: 329 NLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFN--SMGEKSVP 386
Query: 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------- 309
SW S+I G+ +HG + A+E F M++ G +PN TF+ VL++C+HGGL
Sbjct: 387 SWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRM 446
Query: 310 -----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
H+GC++D+LGRAG LEQ+E + + ++++ + IL+ A N++
Sbjct: 447 VRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALW-GILMSASQTQNNIK 505
Query: 359 MGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+GE V +K++EM G Y+L+ NI A GR+ D E++R+VM+E+ K G SLV
Sbjct: 506 LGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 23/201 (11%)
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+L ++P + VTWN ++ ++ G L AR LF+EMP R+VVS+ ++ GY G
Sbjct: 147 RLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAG 206
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE-------KRGFNAF---DIRVSNCLI 233
A + + + V +I GY ++ F+A D+ N ++
Sbjct: 207 ARN---------LFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSML 257
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKP 292
D YA+ G + A +F+ + ++++VSW I++ +A + + F+ M G P
Sbjct: 258 DGYAQAGDVEMARLVFD--GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVP 315
Query: 293 NRVTFLSVLNACSH-GGLHYG 312
N TF+SVL AC++ G L G
Sbjct: 316 NEKTFVSVLTACANLGDLEKG 336
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 230/469 (49%), Gaps = 70/469 (14%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYS-----------LADSP---------------KK 43
+IH H++ + L L+N+L+ FY A P K+
Sbjct: 151 QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQ 210
Query: 44 AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG--FQS 101
F L + L+ + + P D +T L+ C LS LG +H I + G + S
Sbjct: 211 GFSL-EALKLYFKMVSDGIEP--DEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSS 267
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
++ ++ AL++MY + + FD + ++++ +WN M+ G V+ G++E A+++F++MP
Sbjct: 268 NLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMP 327
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNC 209
R++VSW +L GY++ E P +T+++++ NG + +
Sbjct: 328 KRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHG 387
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+ +HG + D +S+ LID Y KCG I A +F+ + K++ WTS+I+G
Sbjct: 388 RWVHGLVIRLQLKG-DAFLSSALIDMYCKCGIIERAFMVFK--TATEKDVALWTSMITGL 444
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A HG G+ A++ F RMQ+ G+ PN VT L+VL ACSH GL
Sbjct: 445 AFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPE 504
Query: 310 --HYGCLVDMLGRAGRLEQAEKIAL-GIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYG LVD+L RAGR+E+A+ I +P + + I L AC ++E E +
Sbjct: 505 TEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSI-LSACRGGEDIETAELALTE 563
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+L++E G YVL+ NI A VGR+ +++ R M+ R K G S V
Sbjct: 564 LLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 170/389 (43%), Gaps = 94/389 (24%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++NT++ +++ S + F LY + + H SP D T+ +L++ LS
Sbjct: 99 NVFVYNTMIS--AVSSSKNECFGLYSSMIR---HRVSP-----DRQTFLYLMKASSFLSE 148
Query: 84 PNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
Q+H I G S Y+ +LV Y+ LG + K+F +P ++ ++NVMI
Sbjct: 149 VK---QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIV 205
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G K G A L+ +M + DG EP E T+L++L
Sbjct: 206 GYAKQGFSLEALKLYFKM----------VSDG-----------IEPDEYTVLSLLVCCGH 244
Query: 203 NGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+R + +HG+ E+RG + ++ +SN L+D Y KC A + F+ ++++K++ S
Sbjct: 245 LSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFD--AMKKKDMRS 302
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGL------------------------------- 290
W +++ GF G +AA F++M K L
Sbjct: 303 WNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVE 362
Query: 291 --KPNRVTFLSVLN-ACSHGGLHYG--------------------CLVDMLGRAGRLEQA 327
KP+RVT +S+++ A ++G L +G L+DM + G +E+A
Sbjct: 363 KVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERA 422
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGN 356
+ +E DV + ++ +FHGN
Sbjct: 423 -FMVFKTATE-KDVALWTSMITGLAFHGN 449
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/405 (30%), Positives = 204/405 (50%), Gaps = 75/405 (18%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+A +Y+++QQ + + P + TY+ ++ C + + G ++H + + G +
Sbjct: 412 EALTVYQEMQQ------AGVEP--NRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATD 463
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+V LVNMY G +KD AR +F+ M
Sbjct: 464 AHVGNTLVNMYSMCGSVKD-------------------------------ARQVFDRMIQ 492
Query: 163 RNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212
R++V++ ++ GY N R +P ++T + +L A +G++ + I
Sbjct: 493 RDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREI 552
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H K GF + D V N L+ TYAKCG A +FE ++ ++N++SW +II G A H
Sbjct: 553 HTLVRKGGFFS-DTSVGNALVSTYAKCGSFSDASIVFEKMT--KRNVISWNAIIGGSAQH 609
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G G+ A++ FERM+ G+KP+ VTF+S+L+ACSH GL H
Sbjct: 610 GRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEH 669
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
YGC+VD+LGRAG+L++AE + +P + + + LLGAC HGNV + ER L++
Sbjct: 670 YGCMVDLLGRAGQLDEAEALIKTMPFQ-ANTRIWGALLGACRIHGNVPVAERAAESSLKL 728
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ N YV + ++ A G + A +LR++M++R K PGRS +
Sbjct: 729 DLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 773
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 161/298 (54%), Gaps = 33/298 (11%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+ +NT++ + ++A +Y Q+Q+ + P + TY L+ CV + +
Sbjct: 294 IAWNTMIGGLAEGGYWEEASEVYNQMQR------EGVMP--NKITYVILLNACVNSAALH 345
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G ++H+ ++K GF S + V AL++MY G +KD+ +FD++ +++++W MI GL
Sbjct: 346 WGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLA 405
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K G A ++++EM A EP+ +T ++L A A
Sbjct: 406 KSGFGAEALTVYQEM---------------------QQAGVEPNRVTYTSILNACSSPAA 444
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IH + G A D V N L++ Y+ CG + A ++F+ + ++++V++ ++
Sbjct: 445 LEWGRRIHQQVVEAGL-ATDAHVGNTLVNMYSMCGSVKDARQVFDRMI--QRDIVAYNAM 501
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRAG 322
I G+A H +GK A++ F+R+Q+ GLKP++VT++++LNAC++ G L + + L R G
Sbjct: 502 IGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKG 559
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 170/354 (48%), Gaps = 53/354 (14%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y+ + AF ++++++Q + P + TY ++ + + G +H+ I
Sbjct: 202 YADCGRSETAFEIFQKMEQ------EGVVP--NRITYISVLNAFSSPAALKWGKAVHSRI 253
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
G +S V TALV MY G KD ++F++L R+L+ WN MI GL + G E A
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEAS 313
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214
++ +M V+ P++IT + +L A + A+ + IH
Sbjct: 314 EVYNQMQREGVM---------------------PNKITYVILLNACVNSAALHWGKEIHS 352
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
K GF + DI V N LI Y++CG I A +F+ + RK+++SWT++I G A G
Sbjct: 353 RVAKAGFTS-DIGVQNALISMYSRCGSIKDARLVFDKMV--RKDVISWTAMIGGLAKSGF 409
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRAGRLEQAEKIALG 333
G A+ ++ MQ+ G++PNRVT+ S+LNACS L + GR + + G
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEW----------GRRIHQQVVEAG 459
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
+ TD V L+ S G+V+ +V ++++ + ++ YN + G
Sbjct: 460 LA---TDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRD-------IVAYNAMIG 503
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 129/241 (53%), Gaps = 26/241 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+S Y +++ C+ + G Q+H I + Y AL+NMY+ G ++++ +++
Sbjct: 22 NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVW 81
Query: 127 DELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+L ER + +WN M+ G +++G +E A L +M +
Sbjct: 82 KKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA------------------ 123
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P TI++ L + GA+ + IH + G FD++V+NC+++ YAKCG I
Sbjct: 124 ---PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGL-LFDVKVANCILNMYAKCGSIEE 179
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A ++F+ + E+K++VSWT I G+A G + A E F++M++ G+ PNR+T++SVLNA
Sbjct: 180 AREVFDKM--EKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAF 237
Query: 305 S 305
S
Sbjct: 238 S 238
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 33/272 (12%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
+KA L +Q+QQ H +P R SF + +C + G ++H + G
Sbjct: 108 EKALKLLRQMQQ---HGLAPDRTTIMSF-----LSSCKSPGALEWGREIHFQAMQAGLLF 159
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
V V ++NMY G ++++ ++FD++ ++++V+W + I G G E A +F++M
Sbjct: 160 DVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKME 219
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
VV P+ IT ++VL A A++ + +H G
Sbjct: 220 QEGVV---------------------PNRITYISVLNAFSSPAALKWGKAVHSRILNAGH 258
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
+ D V L+ YAKCG ++FE + ++L++W ++I G A G + A E
Sbjct: 259 ES-DTAVGTALVKMYAKCGSYKDCRQVFEKLV--NRDLIAWNTMIGGLAEGGYWEEASEV 315
Query: 282 FERMQKVGLKPNRVTFLSVLNAC-SHGGLHYG 312
+ +MQ+ G+ PN++T++ +LNAC + LH+G
Sbjct: 316 YNQMQREGVMPNKITYVILLNACVNSAALHWG 347
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 21/122 (17%)
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LI+ Y +CG I A ++++ +S + + SW +++ G+ +G + A++ +MQ+ G
Sbjct: 62 NALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHG 121
Query: 290 LKPNRVTFLSVLNAC-SHGGLHYG--------------------CLVDMLGRAGRLEQAE 328
L P+R T +S L++C S G L +G C+++M + G +E+A
Sbjct: 122 LAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAR 181
Query: 329 KI 330
++
Sbjct: 182 EV 183
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/426 (30%), Positives = 220/426 (51%), Gaps = 81/426 (19%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + KKA L+K++ + + ++P D T + ++ C LG
Sbjct: 175 WNAMISGYAETGNYKKALELFKEMMK------TNVKP--DESTMATVVSACAQSGSIELG 226
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H+ I+ GF S++ + AL+++Y K
Sbjct: 227 RQVHSWINDHGFGSNLKIVNALIDLYS-------------------------------KC 255
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GE+E A L E + ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 256 GEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 315
Query: 198 PAIWQNGAVRNCQLIHGYGEKR-----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
PA GA+ + IH Y +K+ NA +R S LID YAKCG I +A ++ D
Sbjct: 316 PACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTS--LIDMYAKCGDIDAAPQV-SDS 372
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
S ++L +W ++I GFAMHG AA + F RM+K G++P+ +TF+ +L+ACSH G+
Sbjct: 373 SAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 432
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC++D+LG +G ++AE++ +P E D V+ LL A
Sbjct: 433 GRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPME-PDGVIWCSLLKA 491
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN-ALKF 409
C HGN+E+GE +K++++E N G YVL+ NI A G++ + ++R +++++ K
Sbjct: 492 CKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKV 551
Query: 410 PGRSLV 415
PG S +
Sbjct: 552 PGCSSI 557
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 163/293 (55%), Gaps = 21/293 (7%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++N + ++L+ P A LY + + L P F FT+ FL+++C
Sbjct: 41 LIWNIMFRGHALSSDPVSALKLYVVMISL------GLLPNF--FTFPFLLKSCAKSKTFK 92
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+GF +YV+T+L++MY G L+D+ K+FD R++V++ +ITG
Sbjct: 93 EGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYA 152
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G +E A+ +F+E+P ++VVSW ++ GY A + +P E T+
Sbjct: 153 SRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMAT 212
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q+G++ + +H + GF + ++++ N LID Y+KCG + +A +L E +S
Sbjct: 213 VVSACAQSGSIELGRQVHSWINDHGFGS-NLKIVNALIDLYSKCGEVETACELLEGLS-- 269
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G
Sbjct: 270 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 322
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 44/261 (16%)
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGILDGYTRMNR 180
+F+ +PE N + WN+M G + A L+ M N ++ +L +
Sbjct: 31 VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90
Query: 181 SNGASTEPSEITIL----------AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
+ L +++ QNG + + Q + R D+
Sbjct: 91 FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR-----DVVSYT 145
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LI YA G I SA K+F++I + K++VSW ++ISG+A G K A+E F+ M K +
Sbjct: 146 ALITGYASRGYIESAQKMFDEIPI--KDVVSWNAMISGYAETGNYKKALELFKEMMKTNV 203
Query: 291 KPNRVTFLSVLNACSHGG-------LH--------------YGCLVDMLGRAGRLEQAEK 329
KP+ T +V++AC+ G +H L+D+ + G +E A +
Sbjct: 204 KPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACE 263
Query: 330 IALGIPSEITDVVVRRILLGA 350
+ G+ ++ DV+ L+G
Sbjct: 264 LLEGLSNK--DVISWNTLIGG 282
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 202/412 (49%), Gaps = 55/412 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+ +N L+ Y+ A +++++++ DS T L+ C Y
Sbjct: 119 VCYNALISGYTANSKVSDAAFMFRRMKETGVS--------VDSVTILGLVPLCTVPEYLW 170
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG LH K G S V V + + MY+ G ++ +LFDE+P + L+TWN +I+G
Sbjct: 171 LGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYS 230
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G LFE+M +S+G +P T+++VL + GA
Sbjct: 231 QNGLAYDVLELFEQM-------------------KSSGVCPDP--FTLVSVLSSCAHLGA 269
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ Q + E GF A ++ +SN LI YA+CG + A +F+ + V K+LVSWT++
Sbjct: 270 KKIGQEVGELVEANGF-APNVFLSNALISMYARCGNLAKARAVFDIMPV--KSLVSWTAM 326
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I + MHGMG+ + F+ M K G++P+ F+ VL+ACSH GL
Sbjct: 327 IGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK 386
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY CLVD+LGRAGRL++A + +P E D V LLGAC H NV+M E
Sbjct: 387 LEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVE-PDGAVWGALLGACKIHKNVDMAELA 445
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
KV+E E N G YVLM NI + R+R +M ER K PG S V
Sbjct: 446 FAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYV 497
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 182/390 (46%), Gaps = 57/390 (14%)
Query: 52 QQIYTHSHSPLRPLF------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105
Q ++T S S R + D+F++ F++++C +LS P G QLH + + G ++ +V
Sbjct: 28 QSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFV 87
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNL--VTWNVMITGLVKWGELEYARSLFEEMPCR 163
TAL++MY G ++D+ K+F+E P + V +N +I+G ++ A +F M
Sbjct: 88 LTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRM--- 144
Query: 164 NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223
+ G S + +TIL ++P + + +HG K G +
Sbjct: 145 ----------------KETGVSVD--SVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYS 186
Query: 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
++ V N I Y KCG + S +LF+++ V K L++W ++ISG++ +G+ +E FE
Sbjct: 187 -EVAVLNSFITMYMKCGSVESGRRLFDEMPV--KGLITWNAVISGYSQNGLAYDVLELFE 243
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGLHY---------------------GCLVDMLGRAG 322
+M+ G+ P+ T +SVL++C+H G L+ M R G
Sbjct: 244 QMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCG 303
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-RGNGGDYVLM 381
L +A + +P + +V ++G HG E G + +++ R +G +V++
Sbjct: 304 NLAKARAVFDIMP--VKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMV 361
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPG 411
+ + G L R M L+ PG
Sbjct: 362 LSACSHSGLTDKGLELFRAMKREYKLE-PG 390
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 199/383 (51%), Gaps = 54/383 (14%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPN-----LGTQLHAVISKVGFQSHVYVNTALVNMYVSL 116
LR DS++Y+ ++ C+ S + L ++HA + G+ H +V T L++ Y L
Sbjct: 174 LRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKL 233
Query: 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176
G + + +F +PERN+V+W MI K A LF+EM V S ++
Sbjct: 234 GIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEM----VASDEDLV---- 285
Query: 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
P+ +TI+ +L A A+ +L+H Y +RGF++ + V N L+ Y
Sbjct: 286 -----------PNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSL-VSVLNALMAMY 333
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
KCGC+ + +F D+ RK++VSW ++ISG+ MHG G AV+ FE M ++G+ PN +T
Sbjct: 334 MKCGCLEAGRHIF-DLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIIT 392
Query: 297 FLSVLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGI- 334
F+SVL ACSH GL HY C+VD+LGRAG L++A ++ G+
Sbjct: 393 FISVLGACSHAGLVDEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMH 452
Query: 335 --PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
PS V LLGAC H +VE E ++ ++E N G+YVL+ +I A +
Sbjct: 453 IRPSP----QVWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHS 508
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
+ L+ +++E K PG S +
Sbjct: 509 EVGVLKDLLEEHALEKVPGCSWI 531
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE 158
F+S +++T L++ Y SLG L + ++FDE P +++ WN ++ L E A +
Sbjct: 110 FRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLA 169
Query: 159 EMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
+M G R+ + + + I A + + VR IH + +
Sbjct: 170 DM-------------GRLRVPVDSYSYAHGLKACIAASTSHVPASALVRE---IHAHAVR 213
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAA 278
RG+ V+ LID YAK G + A +F ++ +N+VSWT++I +A + A
Sbjct: 214 RGYG-LHTHVATTLIDCYAKLGIVSYAESVFA--TMPERNVVSWTAMIGCYAKNERPGDA 270
Query: 279 VENFERM--QKVGLKPNRVTFLSVLNA 303
+ F+ M L PN VT + +L+A
Sbjct: 271 ILLFQEMVASDEDLVPNSVTIVCILHA 297
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 196/375 (52%), Gaps = 37/375 (9%)
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
++ C G H ++ + G S V V L++MY S + + +LFD +
Sbjct: 275 VVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLD 334
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--------- 184
+WN MI+G +K G +E A++LF+ MP ++ VSW+ ++ G N+S+ A
Sbjct: 335 HFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRA 394
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+P ++T+++V+ A A+ +L+H Y K +N I + LID Y KCGC+
Sbjct: 395 HEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYN-ITIVLGTSLIDMYMKCGCME 453
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLN 302
+AL++F+ +E K W ++I G AM+G+ +++ F M+ G PN +TF VL+
Sbjct: 454 AALEVFD--MLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLS 511
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
AC HGGL HYGC+VD+LGRAG + +AE + +P D
Sbjct: 512 ACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMPMS-PD 570
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
V LLGAC HG+ E+GERV +K+++++ + G ++ NI A G + + LR
Sbjct: 571 VPAWGALLGACWKHGDSEVGERVGKKLVKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGS 630
Query: 401 MDERNALKFPGRSLV 415
M +++ K G S+V
Sbjct: 631 MKQQHVAKVAGCSMV 645
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 158/376 (42%), Gaps = 93/376 (24%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAF----LLYKQLQQIYTHSHSPLRPLF----DSFTYSF 73
LHH+L + L SP AF LL L+Q + H PL D++T+
Sbjct: 59 LHHSL------QLFGLVRSPN-AFTCNTLLKAALRQGFPHLCFPLYASMPAAPDTYTHPL 111
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD------ 127
L C G Q+H+ K GF ++Y+ AL++MY + G + + ++FD
Sbjct: 112 LAAACAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWD 171
Query: 128 -------------------------ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+PER+ + M+ + G +E AR +F+
Sbjct: 172 AVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEH 231
Query: 163 RNVVSWTGILDGYTRMN------------RSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210
R+ +WT ++ + R + R G + E +++V+ A ++G ++N +
Sbjct: 232 RDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVD--EAVMVSVVAACAKSGVIQNGE 289
Query: 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE-------------------- 250
+ HG + G + + V N LI Y+ C + +A +LF+
Sbjct: 290 VCHGLVVRAGLGS-RVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKN 348
Query: 251 ----------DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
D+ ++ N VSW+++I+G + A+ F+ M+ +KP+ VT +SV
Sbjct: 349 GRVEDAKALFDVMPDKDN-VSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSV 407
Query: 301 LNACSH-GGLHYGCLV 315
++ACS+ L G LV
Sbjct: 408 ISACSNLSALEQGKLV 423
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 27/255 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T +I C LS G +H I K + + + T+L++MY+ G ++ + ++F
Sbjct: 400 DDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVF 459
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D L E+ WN +I GL G + + +F EM + G +
Sbjct: 460 DMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEM-------------------EATGTAV 500
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+EIT VL A G V + + + +IR C++D + G + A
Sbjct: 501 -PNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAE 559
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK--VGLKPNRVTFLSVLNAC 304
+ + + + ++ +W +++ HG + ER+ K V L P+ F ++L+
Sbjct: 560 DMIQSMPMS-PDVPAWGALLGACWKHGDSEVG----ERVGKKLVKLDPDHDGFQTMLSNI 614
Query: 305 SHGGLHYGCLVDMLG 319
+ C+ D+ G
Sbjct: 615 YASEGMWQCVKDLRG 629
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 205/393 (52%), Gaps = 46/393 (11%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
S ++P + T L+ C +G LH I + + + A+++MYV G L
Sbjct: 247 SDVKP--NEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCL 304
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
+ ++F+ + R++ +W ++ G K G+L AR LF+EMP RN+VSW ++ GY++ +
Sbjct: 305 TTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNS 364
Query: 180 RSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+ A P+E T++ VL A Q G + Q IH N I+V
Sbjct: 365 QPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHC----NHVNKIGIQV 420
Query: 229 S----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
S N ++D YAKCG I +A KLF S+ KNLVSW S+IS +A +G K A+ F++
Sbjct: 421 SLILKNAVMDMYAKCGSIDAAAKLFH--SMPEKNLVSWNSMISAYASYGHAKKALTLFDQ 478
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAG 322
M GLKP+ +TF+ VL+ACS+GG HY C+VD+L R G
Sbjct: 479 MIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVG 538
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
L++A ++ +P E ++ LL AC HGNVEM + K+LE++ + G Y L+
Sbjct: 539 LLKEAYELISRMPMEASE-GGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLA 597
Query: 383 NILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A ++ D +RR+M ER K PG SL+
Sbjct: 598 NICADGKKWKDVRMVRRMMRERGVKKVPGHSLI 630
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 142/276 (51%), Gaps = 32/276 (11%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
++HL+ + L + +NT++ Y A+ P F ++Q+ + R FDS ++
Sbjct: 104 YAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRN--------RAEFDSGSF 155
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
F ++ C + +G +H+VI K GF S ++V L+ YV G L + ++FDE
Sbjct: 156 VFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSV 215
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
+++VTW MI G + L+ A +LF M +V +P+E+
Sbjct: 216 KDVVTWTTMINGYARNNWLDEAIALFNSMLSSDV---------------------KPNEV 254
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T++A+L A Q G + +H + ++ + + N ++D Y KCGC+ +A ++F +
Sbjct: 255 TMIALLSACSQKGDSEMGKTLHEHIRRKDITC-SLNLLNAMLDMYVKCGCLTTAREIFNN 313
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+ ER+++ SWTS+++G+A +G +A + F+ M +
Sbjct: 314 M--ERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPE 347
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNR-SNGAS---------TEPSEITILAVL 197
G++ YA +F++ N W ++ GY + N S G S E + + L
Sbjct: 100 GDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFAL 159
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q +H KRGF++ D+ V N LI Y + GC+ A ++F++ SV K
Sbjct: 160 KACGQFAEKIVGMAVHSVIWKRGFDS-DLFVQNGLIQNYVETGCLGFARQMFDESSV--K 216
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
++V+WT++I+G+A + A+ F M +KPN VT +++L+ACS G
Sbjct: 217 DVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKG 267
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 216/415 (52%), Gaps = 57/415 (13%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV----TLS 82
++N L ++ K+ LY Q+ I S D FTY+F+++ CV ++S
Sbjct: 146 VWNALFRALAMVGCGKELLDLYVQMNWIGIPS--------DRFTYTFVLKACVVSELSVS 197
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
G ++HA I + G++++++V T L+++Y G + ++ +F +P +N V+W+ MI
Sbjct: 198 PLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIA 257
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
K A LF+ M +L+ + + P+ +T++ VL A
Sbjct: 258 CFAKNEMPMKALELFQLM----------MLEAHDSV---------PNSVTMVNVLQACAG 298
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
A+ +LIHGY +RG ++ + V N LI Y +CG I ++F+++ + +++VSW
Sbjct: 299 LAALEQGKLIHGYILRRGLDSI-LPVLNALITMYGRCGEILMGQRVFDNM--KNRDVVSW 355
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------- 309
S+IS + MHG GK A++ FE M G P+ ++F++VL ACSH GL
Sbjct: 356 NSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLS 415
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HY C+VD+LGRA RL++A K+ + E V LLG+C H NVE+
Sbjct: 416 KYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGS-LLGSCRIHCNVELA 474
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
ER + + E+E N G+YVL+ +I A + +A+ + ++++ R K PG S +
Sbjct: 475 ERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWI 529
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 165/393 (41%), Gaps = 92/393 (23%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T+ LI +C + + G +H + GF ++ T L+NMY LG + + K+FDE
Sbjct: 80 TFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDET 139
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG---YTRMNRSNGAST 186
ER + WN + L G + L+ +M +W GI YT + ++ S
Sbjct: 140 RERTIYVWNALFRALAMVGCGKELLDLYVQM------NWIGIPSDRFTYTFVLKACVVSE 193
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
L+V P Q G + IH + + G+ A +I V L+D YAK G + A
Sbjct: 194 -------LSVSPL--QKG-----KEIHAHILRHGYEA-NIHVMTTLLDVYAKFGSVSYAN 238
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNAC 304
+F ++ KN VSW+++I+ FA + M A+E F+ M + PN VT ++VL AC
Sbjct: 239 SVF--CAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQAC 296
Query: 305 S------HGGLHYG---------------CLVDMLGRAGRLEQAEKI------------- 330
+ G L +G L+ M GR G + +++
Sbjct: 297 AGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWN 356
Query: 331 --------------ALGI----------PSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
A+ I PS I+ + V LGACS G VE G+ +
Sbjct: 357 SLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITV----LGACSHAGLVEEGKILFES 412
Query: 367 VLEMERGNGG--DYVLMYNILAGVGRYVDAERL 397
+L R + G Y M ++L R +A +L
Sbjct: 413 MLSKYRIHPGMEHYACMVDLLGRANRLDEAIKL 445
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 205/416 (49%), Gaps = 44/416 (10%)
Query: 36 SLADSPKKAFLLYKQLQQIYT-HSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
S+ + KA + + L + T +H L+P D F ++ ++R C +L Y LG Q+HA
Sbjct: 74 SILTAHNKALIPRRTLSMLNTMFTHDGLQP--DHFVFACIVRACSSLGYLRLGKQVHARF 131
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
F V ++L++MY G D+ +FD + +N V+W MI+G + G A
Sbjct: 132 MLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAM 191
Query: 155 SLFEEMPCRNVVSWTGILDG-------------YTRMNRSNGASTEPSEITILAVLPAIW 201
LF + P RN+ SWT ++ G + M R +P + + +V+
Sbjct: 192 DLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDP--LVLSSVVGGCA 249
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+ + IHG GF + + +SN L+D YAKC I +A +F + RK+++S
Sbjct: 250 NLALLELGKQIHGLVIALGFESC-LFISNALVDMYAKCSDILAAKDIF--YRMPRKDVIS 306
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
WTSII G A HG + A+ ++ M +KPN VTF+ +L ACSH GL
Sbjct: 307 WTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT 366
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HY CL+D+L R+G L++AE + IP + D LL AC H N+EM
Sbjct: 367 TDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFK-PDEPTWASLLSACMRHNNLEM 425
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
G R+ +VL+++ + Y+L+ N+ AG + ++R++M K PG S +
Sbjct: 426 GVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSI 481
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 88/219 (40%), Gaps = 45/219 (20%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C + +LH+ I K GF ++ L+++Y G + + +LFD
Sbjct: 10 LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFD------- 62
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-------MNRSNGAST- 186
EMP R+ VSW IL + + ++ N T
Sbjct: 63 ------------------------EMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTH 98
Query: 187 ---EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+P ++ A G +R + +H F D V + LID Y KCG
Sbjct: 99 DGLQPDHFVFACIVRACSSLGYLRLGKQVHARF-MLSFFCDDEVVKSSLIDMYTKCGQPD 157
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
A +F+ S+ KN VSWTS+ISG+A G A++ F
Sbjct: 158 DARAVFD--SILFKNSVSWTSMISGYARSGRKCEAMDLF 194
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
+H K GF+ + +SN L+D Y KCG I AL+LF+++ ++ VSW SI++
Sbjct: 25 LHSQIIKAGFDKSSL-LSNTLLDVYGKCGLIPQALQLFDEMP--NRDHVSWASILTAHNK 81
Query: 272 HGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACSHGG-------------LHYGC---- 313
+ + + M GL+P+ F ++ ACS G L + C
Sbjct: 82 ALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEV 141
Query: 314 ----LVDMLGRAGRLEQAEKI 330
L+DM + G+ + A +
Sbjct: 142 VKSSLIDMYTKCGQPDDARAV 162
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 175/315 (55%), Gaps = 35/315 (11%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSN 182
NL N +I K G+L+ AR LFE + ++++SW ++ GY+ MN +
Sbjct: 298 NLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQ 357
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
++ EP+++T +++LPA GA+ + IH Y +K+ + + LID YAKCG I
Sbjct: 358 QSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNI 417
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
+A ++F ++ K+L SW ++ISG AMHG A+E F +M+ G +P+ +TF+ VL+
Sbjct: 418 EAAKQVFA--GMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLS 475
Query: 303 ACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
ACSH GL HYGC++D+LGRAG ++AE + + + D
Sbjct: 476 ACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK-PD 534
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+ LLGAC HGNVE+GE + + E+E N G YVL+ NI A GR+ D R+R
Sbjct: 535 GAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTK 594
Query: 401 MDERNALKFPGRSLV 415
++++ K PG S +
Sbjct: 595 LNDKGMKKVPGCSSI 609
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 210/450 (46%), Gaps = 86/450 (19%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++NT++ SL+ SP A Y ++ +S+T+ FL+++C +
Sbjct: 98 FIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEP--------NSYTFPFLLKSCAKVGATQ 149
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G +S +V+T+L+NMY G L + +F + R+ V++ +ITG
Sbjct: 150 EGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYT 209
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR----------SNGASTEPSEITILA 195
G L+ AR LFEE+P R+ VSW ++ GY + R A+ P+E T++
Sbjct: 210 LRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVT 269
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q+G++ + + E G + ++R+ N LID Y+KCG + A LFE I
Sbjct: 270 VLSACAQSGSLELGNWVRSWIEDHGLGS-NLRLVNALIDMYSKCGDLDKARDLFEGIC-- 326
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K+++SW +I G++ K A+ F +MQ+ ++PN VTF+S+L AC++ G L G
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKW 386
Query: 313 -------------------CLVDMLGRAGRLEQAEKIALGI------------------- 334
L+DM + G +E A+++ G+
Sbjct: 387 IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHG 446
Query: 335 ------------------PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376
P +IT V V L ACS G VE+G + ++E +
Sbjct: 447 HANMALELFRQMRDEGFEPDDITFVGV----LSACSHAGLVELGRQCFSSMVEDYDISPK 502
Query: 377 --DYVLMYNILAGVGRYVDAERLRRVMDER 404
Y M ++L G + +AE L + M+ +
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMK 532
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 158/390 (40%), Gaps = 104/390 (26%)
Query: 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLH 91
LHF +D P YK LQ +H L L+ TC S+ NL Q+H
Sbjct: 17 LHFQPTSDPP------YKLLQ-----NHPSLT----------LLSTCK--SFQNL-KQIH 52
Query: 92 AVISKVGFQSHVYVNTALVNMYV--SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
+ I K G + + + L+ G L + LF+ + + N WN MI G
Sbjct: 53 SQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRG------ 106
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209
SL S G +D Y RM EP+ T +L + + GA +
Sbjct: 107 ----NSLSS--------SPVGAIDFYVRMLL---CGVEPNSYTFPFLLKSCAKVGATQEG 151
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKC------------------------------ 239
+ IHG+ K G + D V LI+ YA+
Sbjct: 152 KQIHGHVLKLGLES-DPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210
Query: 240 -GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
GC+ A +LFE+I V ++ VSW ++I+G+A G + A+ F+ M++ + PN T +
Sbjct: 211 RGCLDDARRLFEEIPV--RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMV 268
Query: 299 SVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSE 337
+VL+AC+ G L G L+DM + G L++A + GI +
Sbjct: 269 TVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEK 328
Query: 338 ITDVVVRRILLGACSFHGNVEMGERVTRKV 367
D++ +++G S + + + RK+
Sbjct: 329 --DIISWNVMIGGYSHMNSYKEALALFRKM 356
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/443 (29%), Positives = 206/443 (46%), Gaps = 98/443 (22%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DSFT +++ C L G Q+H ++ K+GF +V ++LV+MY G ++ K+F
Sbjct: 113 DSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVF 172
Query: 127 D-------------------------------ELPERNLVTWNVMITGLVKWGELEYARS 155
D E+PE++ +W ++I GL K G+LE AR
Sbjct: 173 DRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARD 232
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGA------------------------------- 184
+F+ MP RN VSW +++GY + SN A
Sbjct: 233 VFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKA 292
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234
P+ TIL + A ++ + +H Y K GF D + LI+
Sbjct: 293 LKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKT-DGVLGTLLIE 351
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
Y+KCG + SAL++F S+ +K L WTS+I G MHG+ + +E F+ M + GLKP+
Sbjct: 352 MYSKCGSVKSALRVFR--SIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHA 409
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+ VLNACSH G HYGCL+D+L RAG LE+A+
Sbjct: 410 ITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIE 469
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+P + V+ +L G+ HGN+ MGE + ++++ G YV++ N+ A G +
Sbjct: 470 RMPIKANKVIWTSLLSGS-RKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWE 528
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
++R +M ++ K PG S +
Sbjct: 529 KVRQVREMMKKKGMKKDPGCSSI 551
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 52/287 (18%)
Query: 51 LQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110
L +HS P P F ++ C T N QLHA+ K +H V++ L+
Sbjct: 2 LSPTLSHSLQPFLPP----NLHFPLQNCGTEREAN---QLHALSIKTASLNHPSVSSRLL 54
Query: 111 NMYVS--LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+Y + L+ + LFD + E LV+WN++I ++ A +LF ++ C V
Sbjct: 55 ALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV--- 111
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
P T+ VL + GA++ + IHG K GF D V
Sbjct: 112 -------------------PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGF-GVDKFV 151
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
+ L+ Y+KCG I K+F+ +E K++VSW S+I G+A G + A+E FE M
Sbjct: 152 LSSLVSMYSKCGEIELCRKVFD--RMEDKDVVSWNSLIDGYARCGEIELALEMFEEM--- 206
Query: 289 GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIP 335
P + +F + L+D L ++G+LE A + +P
Sbjct: 207 ---PEKDSF------------SWTILIDGLSKSGKLEAARDVFDRMP 238
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 199/375 (53%), Gaps = 37/375 (9%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
+S ++ C TL GT++HA K+G ++++V+++L++MY + ++F+ LP
Sbjct: 382 FSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP 441
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE--- 187
E+N V WN +I+G G++ A LF +MP RN VSW ++ GY NR G +
Sbjct: 442 EKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAE-NRRFGDALNYFY 500
Query: 188 --------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239
P EIT+ +VL A ++ +++H K G +I + L D YAK
Sbjct: 501 AMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIED-NIFMGTALSDMYAKS 559
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + S+ ++F + KN ++WT+++ G A +G + ++ FE M + G+ PN TFL+
Sbjct: 560 GDLDSSRRVF--YQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLA 617
Query: 300 VLNACSHGGL---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+L ACSH GL HY C+VD+L RAG L +AE++ + + SE+
Sbjct: 618 ILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSEL 677
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D LL ACS + N E+GER +K+ E+E+ N YVL+ N+ A G++ DA R
Sbjct: 678 -DTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETR 736
Query: 399 RVMDERNALKFPGRS 413
+M + K G S
Sbjct: 737 ILMQGASLKKDAGCS 751
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 30/224 (13%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
T S ++ C L +G +HA I K+G + ++++ TAL +MY G L S ++F +
Sbjct: 512 ITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQ 571
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+PE+N +TW M+ GL + G E + SLFE+M NG + P
Sbjct: 572 MPEKNNITWTAMVQGLAENGFAEESISLFEDMI-------------------ENGIA--P 610
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN--CLIDTYAKCGCIFSAL 246
+E T LA+L A G V Q IH Y E + + + C++D A+ GC+ A
Sbjct: 611 NEHTFLAILFACSHCGLVE--QAIH-YFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAE 667
Query: 247 KLFEDISVERKNLVSWTSIISGFAMH---GMGKAAVENFERMQK 287
+L +S E + SW+S++S + + +G+ A + ++K
Sbjct: 668 ELLMKVSSEL-DTSSWSSLLSACSTYRNKEIGERAAKKLHELEK 710
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 152/359 (42%), Gaps = 62/359 (17%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
LH F ++ + + K AF +++++ +RP + T +I+ CV
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFPVFRKMLTC------SVRP--NVVTLICVIKACVGA 259
Query: 82 SYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
+L + + K F+ + V+ +L+ +Y+ +G + ++FD++ R++V+W +
Sbjct: 260 GEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTAL 319
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSE 190
+ G+L AR + + MP RN VSW ++ + + + A P+
Sbjct: 320 LDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNI 379
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+VL A +R IH K G ++ ++ VS+ LID Y KC A ++F
Sbjct: 380 SCFSSVLSACATLQDLRGGTRIHANALKMG-SSTNLFVSSSLIDMYCKCKQCTYAQRVFN 438
Query: 251 DISVERKNLVSWTSIISGFAMHG----------------------MGKAAVEN------- 281
S+ KN V W S+ISG++ +G M EN
Sbjct: 439 --SLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDAL 496
Query: 282 --FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
F M G P +T SVL AC++ C ++M GR+ AE + LGI I
Sbjct: 497 NYFYAMLASGHIPGEITLSSVLLACAN-----LCSLEM----GRMVHAEIVKLGIEDNI 546
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 68/347 (19%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
+V+ +V G + + +LF +PE+++V++ M+ L+K G + A L+E P +V +
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFF 214
Query: 169 TGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T ++ G+ R A S P+ +T++ V+ A G + G K
Sbjct: 215 TAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274
Query: 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---------------------- 256
I V N LI Y + G +A ++F+D+ V
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARR 334
Query: 257 -------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+N VSW ++I+ G A++ + +M G +PN F SVL+AC+
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACA---- 390
Query: 310 HYGCLVDMLG----RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTR 365
L D+ G A L+ L + S + D+ + C++ +RV
Sbjct: 391 ---TLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCK---CKQCTY------AQRVFN 438
Query: 366 KVLEMERGNGGDYVLMYNILAGV---GRYVDAERLRRVMDERNALKF 409
+ E + V ++++G G+ V+AE L M RN++ +
Sbjct: 439 SLPE------KNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSW 479
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 216/462 (46%), Gaps = 84/462 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ + P++A ++ + + + P DS T + +C L LG
Sbjct: 253 WNTMISGWFQNGRPEEALAVFNSMMD------ARVEP--DSATIVSALPSCGYLKELELG 304
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV-- 145
++H ++ K Q + V ALV+MY G + ++S +F E E++++TW MI G +
Sbjct: 305 IKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMN 364
Query: 146 ----------------------------------------KWGELEYARSLFEEMPCRNV 165
K + Y+ +F + +
Sbjct: 365 GNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRT 424
Query: 166 VSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
V W +L G + A E + T +V+PA ++ +H Y
Sbjct: 425 VPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSY 484
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
+ GF + I V LID Y+KCG + A K+F++I + K+++ W+ +I+G+ MHG G
Sbjct: 485 LVRSGFIS-KIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHG 543
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
+ AV F +M G++PN +TF SVL+ACSH GL HY C
Sbjct: 544 ETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTC 603
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+LGRAGRL++A + +P + + + LLGAC H NVE+GE ++ E+E
Sbjct: 604 VVDLLGRAGRLDEAYDLIKSMPFQ-QNHSIWGALLGACLIHQNVELGEVAAERLFELEPE 662
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ G+Y+L+ NI A VGR+ DAE +R +M + K P +S V
Sbjct: 663 STGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQSSV 704
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 30/242 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D +T+ +I+ C +S N+G +H GF S+++V +L+ MY++ G + + ++F
Sbjct: 183 DKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVF 242
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+ + +R++V+WN MI+G + G E A ++F M +D A
Sbjct: 243 NVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSM-----------MD----------ARV 281
Query: 187 EPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
EP TI++ LP+ G ++ +L +H +K I V N L+D Y++CG I
Sbjct: 282 EPDSATIVSALPSC---GYLKELELGIKVHKLVQKNHLQE-KIEVRNALVDMYSRCGGID 337
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A +F + + K++++WTS+I+G+ M+G K+A+ MQ G+ PN VT S+L+A
Sbjct: 338 EASLVFAE--TKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSA 395
Query: 304 CS 305
C+
Sbjct: 396 CA 397
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 24/225 (10%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
+++ + L Y G + + KLFD+L + +L WN +I V G A +F+ M C
Sbjct: 117 IHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMIC 176
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
W P + T V+ A + LIHG GF+
Sbjct: 177 SGKF-W-------------------PDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFS 216
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
+ ++ V N L+ Y CG + A ++F + ++++VSW ++ISG+ +G + A+ F
Sbjct: 217 S-NMFVQNSLLAMYMNCGKVGLARQVFN--VMLKRSVVSWNTMISGWFQNGRPEEALAVF 273
Query: 283 ERMQKVGLKPNRVTFLSVLNACSH-GGLHYGCLVDMLGRAGRLEQ 326
M ++P+ T +S L +C + L G V L + L++
Sbjct: 274 NSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQE 318
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 216/442 (48%), Gaps = 66/442 (14%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++I SH N L+ L+ +L Y LY Q+ +S L P D
Sbjct: 83 ASKIFSHTQNPNVYLYTALIDGLVLSCYY-----TDGIHLYYQM------INSSLVP--D 129
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S+ + +++ C G ++H+ + K+G S+ + L+ +Y G +D+ ++FD
Sbjct: 130 SYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFD 189
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+PER++V VMI G ++ V WT ++DG R SN A
Sbjct: 190 EMPERDVVASTVMINYYFDHG-------------IKDTVCWTAMIDGLVRNGESNRALEV 236
Query: 185 -------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIRVSNCLIDT 235
P+E+TI+ VL A + GA++ + + Y +K N F V LI+
Sbjct: 237 FRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHF---VGGALINM 293
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y++CG I A ++FE + + KN++++ S+I GFA+HG AVE F + K G P+ V
Sbjct: 294 YSRCGDIDEAQRVFEQM--KEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSV 351
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ VLNACSHGGL HYGC+VD+LGR GRLE+A +
Sbjct: 352 TFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSF-IR 410
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+ D V+ LL AC HGN+E+ ERV + ++ + + G Y+L+ N + G++ +
Sbjct: 411 MMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKE 470
Query: 394 AERLRRVMDERNALKFPGRSLV 415
A +R M E K PG S +
Sbjct: 471 AAEVRTNMREEGIEKEPGCSSI 492
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 66/255 (25%)
Query: 115 SLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174
S+G+ +SK+F N+ + +I GLV + C +T +
Sbjct: 79 SIGY---ASKIFSHTQNPNVYLYTALIDGLV--------------LSC----YYTDGIHL 117
Query: 175 YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLI 233
Y +M S S P + +VL A + A++ + +H K G ++ IR+ LI
Sbjct: 118 YYQMINS---SLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIK--LI 172
Query: 234 DTYAKCGCIFSALKLFEDISVER-----------------KNLVSWTSIISGFAMHGMGK 276
+ Y KCG A ++F+++ ER K+ V WT++I G +G
Sbjct: 173 ELYGKCGAFEDARRVFDEMP-ERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESN 231
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------HY--GCLV 315
A+E F MQ+ + PN VT + VL+ACS G H+ G L+
Sbjct: 232 RALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALI 291
Query: 316 DMLGRAGRLEQAEKI 330
+M R G +++A+++
Sbjct: 292 NMYSRCGDIDEAQRV 306
>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Cucumis sativus]
Length = 874
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 201/406 (49%), Gaps = 42/406 (10%)
Query: 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101
+KA LLY +++ H + L + D L+ C G Q H++I K GF
Sbjct: 478 RKALLLYSAMRKSDLHPNEVL--IVD------LLSACGQSVSIEEGRQFHSLIVKNGFVC 529
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
++ +++ Y + + + + + +L + NVMI G K G ++ AR +F+ MP
Sbjct: 530 FDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMP 589
Query: 162 CRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQL 211
++V SW+ ++ GY + + A EP+EIT+++V AI G + +
Sbjct: 590 EKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRW 649
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
H Y + D +S +ID YAKCG I +AL +F I + + W +II G AM
Sbjct: 650 AHEYVCNKVIPLND-NLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAM 708
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------- 309
HG ++E F +Q+ +K N +TFL VL+AC H GL
Sbjct: 709 HGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIK 768
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
HYGCLVD+LGR GRL +AE+I +P + DVV+ LL + HG VE+GER +
Sbjct: 769 HYGCLVDLLGRVGRLREAEEIVRTMPMK-ADVVIWGTLLASSRTHGEVEIGERAAENLAR 827
Query: 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ +G VL+ N+ A G + DA +RR + + ++ PG S V
Sbjct: 828 LQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYSGV 873
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 179/410 (43%), Gaps = 100/410 (24%)
Query: 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGE 149
LHA++ K+ F V ++T L++MY LKD+ +LF+E+P RN V+WNVM+ G VK G
Sbjct: 386 LHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGL 445
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPA 199
++ AR LFE +P R+V SW ++DG+ +M R A P+E+ I+ +L A
Sbjct: 446 VDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSA 505
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFD------------------------------IRVS 229
Q+ ++ + H K GF FD + S
Sbjct: 506 CGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSS 565
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N +I + K G I A ++F+ + K++ SW+++ISG+A + + A++ F M
Sbjct: 566 NVMIVGFTKNGMIDQARQIFD--MMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSK 623
Query: 290 LKPNRVTFLSVLNACSHGGL--------HYGC-------------LVDMLGRAGRLEQAE 328
++PN +T +SV +A + G Y C ++DM + G ++ A
Sbjct: 624 VEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTAL 683
Query: 329 KIALGIPSEITDV-------------------------VVRRIL----------LGACSF 353
+ I + + V + RR + L AC
Sbjct: 684 DVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCH 743
Query: 354 HGNVEMGERV--TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
G VE+GER + K N Y + ++L VGR +AE + R M
Sbjct: 744 AGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTM 793
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 46/274 (16%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
++ C + S + G Q+HA++ K GF S+ ++ +L+NMYV G L + LFD +
Sbjct: 239 LKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDS 298
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN------------RSN 182
V+ N+M++G VK +LE AR LF +MP R VS+T ++ G + + RS
Sbjct: 299 VSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSA 358
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHG-------YG------------------- 216
G + P+E+T+ +V+ A G + NC+++H +G
Sbjct: 359 GVA--PNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLK 416
Query: 217 -EKRGFNAFDIRVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
KR FN +R + N ++ Y K G + A +LFE I +++ SW +I GF
Sbjct: 417 DTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERI--PERDVFSWAIMIDGFVQM 474
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+ A+ + M+K L PN V + +L+AC
Sbjct: 475 KRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQ 508
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 36/167 (21%)
Query: 182 NGASTEPS------EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
NG +PS E+++++ L + A+ + Q IH K GFN+ + + N LI+
Sbjct: 218 NGGRDQPSSSSLDCELSVVSALKYCASSSAISSGQQIHAIVLKYGFNS-NTFILNSLINM 276
Query: 236 YAKCGCIFSALKLFEDISV-----------------------------ERKNLVSWTSII 266
Y KCG + SA LF+ SV + VS+T++I
Sbjct: 277 YVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMI 336
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGC 313
G A + A+E F+ M+ G+ PN VT SV++ACSH G + C
Sbjct: 337 LGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNC 383
>gi|42564994|ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18970
gi|9280314|dbj|BAB01693.1| unnamed protein product [Arabidopsis thaliana]
gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis thaliana]
gi|332642654|gb|AEE76175.1| mitochondrial editing factor 20 [Arabidopsis thaliana]
Length = 472
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 173/318 (54%), Gaps = 50/318 (15%)
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGY-TRMNRSN----------------GASTE 187
K G+L YAR +F+EMP R V+W ++ GY + ++ N G+
Sbjct: 158 AKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVR 217
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSAL 246
P++ T++ VL AI Q G + L+HGY EK GF D+ + L+D Y+KCGC+ +A
Sbjct: 218 PTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAF 277
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+FE + V KN+ +WTS+ +G A++G G RM + G+KPN +TF S+L+A H
Sbjct: 278 SVFELMKV--KNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRH 335
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HYGC+VD+LG+AGR+++A + L +P + D ++
Sbjct: 336 IGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIK-PDAILL 394
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGG-------DYVLMYNILAGVGRYVDAERL 397
R L ACS +G MGE + + +LE+ER + DYV + N+LA G++V+ E+L
Sbjct: 395 RSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKL 454
Query: 398 RRVMDERNALKFPGRSLV 415
R+ M ER PG S V
Sbjct: 455 RKEMKERRIKTRPGYSFV 472
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+R +++HG +K GF + L+ YAK G + A K+F+++ ER + V+W ++
Sbjct: 127 LRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMP-ERTS-VTWNAM 184
Query: 266 ISGFAMHG-----MGKAAVENFERMQ--KVGLKPNRVTFLSVLNACSHGGL 309
I G+ H + A+ F R G++P T + VL+A S GL
Sbjct: 185 IGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGL 235
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/372 (33%), Positives = 189/372 (50%), Gaps = 48/372 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T + C L +LG ++H + + GF V+V ++L++MY G ++D+ K+F
Sbjct: 230 DEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVF 289
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D +P RN V W MI G + + A LF EM + G +
Sbjct: 290 DRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM-------------------QIGGFAA 330
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ + TI VL A GA+ + IH Y E+ D+ N LI Y+KCG I AL
Sbjct: 331 DAA--TIACVLSACGHWGALAQGRWIHLYCERNSIE-MDLNARNALIGMYSKCGDIQKAL 387
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACS 305
++F ++ + ++ SW+++ISG AM+G A+ F +M+ + ++PN +TFL VL AC+
Sbjct: 388 EIFHGLT--QPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACN 445
Query: 306 HGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
HGG HYGC+VD+LGRA L +AEK +P + DVV+
Sbjct: 446 HGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQ-PDVVI 504
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
R LL AC HGN+E+ E +++ E+E G VL+ N+ A R+ D +R+R+ M
Sbjct: 505 WRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMAT 564
Query: 404 RNALKFPGRSLV 415
+ K PG S V
Sbjct: 565 QRIKKQPGCSFV 576
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 157/330 (47%), Gaps = 54/330 (16%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + YS + P + LY + + T L D++++ F+++ C LS + G
Sbjct: 95 WNFMFRAYSRSSFPAETIALYNLMLRNGT--------LPDNYSFPFVLKACARLSLLHKG 146
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLV 145
++H+ K+G V+V AL++ + S G ++ + +FD LP R++V+WN MI+G +
Sbjct: 147 REIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYL 206
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ E A +F W + DG S P E+T+++ L + G
Sbjct: 207 QSHRYELALKVF----------WELLGDG----------SLSPDEVTLVSALSVCGRLGL 246
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IHG GF D+ V + LID Y+KCG I A K+F+ I +N V WTS+
Sbjct: 247 LDLGKKIHGLFTGSGF-VLDVFVGSSLIDMYSKCGQIEDARKVFDRIP--HRNTVCWTSM 303
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LHYGC----- 313
I+G+A + K A+E F MQ G + T VL+AC H G +H C
Sbjct: 304 IAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSI 363
Query: 314 ---------LVDMLGRAGRLEQAEKIALGI 334
L+ M + G +++A +I G+
Sbjct: 364 EMDLNARNALIGMYSKCGDIQKALEIFHGL 393
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 37/221 (16%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTR------------MNRSNGASTEPSEITILAV 196
+ ++R+LF ++ NV SW + Y+R + NG T P + V
Sbjct: 76 DFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNG--TLPDNYSFPFV 133
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
L A + + + IH K G + D+ V N LI ++ CG + +A +F+ +
Sbjct: 134 LKACARLSLLHKGREIHSSTLKLGVH-LDVFVQNALISAFSSCGAVEAARAVFDMLPALV 192
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENF-ERMQKVGLKPNRVTFLSVLNACSHGGLHY---- 311
+++VSW S+ISG+ + A++ F E + L P+ VT +S L+ C GL
Sbjct: 193 RDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKK 252
Query: 312 -----------------GCLVDMLGRAGRLEQAEKIALGIP 335
L+DM + G++E A K+ IP
Sbjct: 253 IHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIP 293
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/413 (32%), Positives = 207/413 (50%), Gaps = 55/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+ +N L+ Y +A LL++Q+ + P+ +S T LI CV+
Sbjct: 117 TVCYNALVSGYVSNSKCSEAVLLFRQMNE----EGVPV----NSVTLLGLIPACVSPINL 168
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG+ LH K GF S V V + MY+ G + + KLFDE+P + L++WN M++G
Sbjct: 169 ELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGY 228
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ G T +L+ Y M+ NG +P +T++ VL + G
Sbjct: 229 AQNG------------------LATNVLELYRNMDM-NGVHPDP--VTLVGVLSSCANLG 267
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A + + GF + + ++N LI+ YA+CG + A +F+ + + LVSWT+
Sbjct: 268 AQSVGHEVEFKIQASGFTS-NPFLNNALINMYARCGNLTKAQAVFDGMP--ERTLVSWTA 324
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
II G+ MHG G+ AV+ F+ M + G++P+ F+ VL+ACSH GL
Sbjct: 325 IIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNY 384
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HY C+VD+LGRAGRL++A+ + +P + D V LLGAC H NVE+ E
Sbjct: 385 QLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK-PDGAVWGALLGACKIHKNVELAEL 443
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+V+E+E N G YVL+ NI + R+R +M E+ K PG S V
Sbjct: 444 AFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 496
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 165/349 (47%), Gaps = 57/349 (16%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+A LY Q+ + H P ++FT+ F +++C LS P LG+Q H I+KVG
Sbjct: 32 QALSLYPQMLR---HGDRP-----NAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFE 83
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDE-LPERNL-VTWNVMITGLVKWGELEYARSLFEEM 160
+V T L++MY + ++ K+F+E R L V +N +++G V + A LF +M
Sbjct: 84 PFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQM 143
Query: 161 PCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
N + +T+L ++PA + +H K G
Sbjct: 144 ---------------------NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG 182
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
F++ D+ V NC I Y KCG + A KLF+++ V K L+SW +++SG+A +G+ +E
Sbjct: 183 FDS-DVSVVNCFITMYMKCGSVNYAQKLFDEMPV--KGLISWNAMVSGYAQNGLATNVLE 239
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHY---------------------GCLVDMLG 319
+ M G+ P+ VT + VL++C++ G L++M
Sbjct: 240 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYA 299
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
R G L +A+ + G+P +V ++G HG+ E+ ++ ++++
Sbjct: 300 RCGNLTKAQAVFDGMPERT--LVSWTAIIGGYGMHGHGEIAVQLFKEMI 346
>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
Length = 767
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 210/414 (50%), Gaps = 48/414 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+L+ + L ++A ++ + T + P R T L+++C L
Sbjct: 236 WNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNR-----VTVIALLKSCAELGCVETS 290
Query: 88 TQLHAVISK----VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+ +H IS + V V TAL++M+ G L + ++FD + +N+V W+ MI G
Sbjct: 291 SWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAG 350
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ E A LF +M +++G G +P+ +T+++V+ A +
Sbjct: 351 YEQGSCPEEALRLFRQM----------LMEG-----NMVGVEVKPNAVTLVSVIAACSRL 395
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA R+ +IH Y G + D R+++ LID AKCG I ++F ++ + +VSW+
Sbjct: 396 GASRSASMIHKYAVATGLDQ-DARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWS 454
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309
S+I +HG GK A+E F M+ G +PN +T++SVL+ACSH GL
Sbjct: 455 SMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKD 514
Query: 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGE 361
HY CLVD+LGRAG L++A + L +P + D+ + LL AC HGN ++GE
Sbjct: 515 YGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK-ADLALWGSLLAACHLHGNCKLGE 573
Query: 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
V +K+L ++ + G +VL+ N+ GR+ D R+R + K PG+S +
Sbjct: 574 IVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFI 627
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 140/293 (47%), Gaps = 34/293 (11%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T +N+L+ + +P+ A + ++Q S ++FT+ L++ C L
Sbjct: 18 TFHWNSLI-AKNATQNPQTALTFFTRMQAHAVPS--------NNFTFPALLKACAALRRL 68
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER--NLVTWNVMIT 142
Q+HA ++++G + + ALV+ Y G ++++FDE+PE ++V+W +I+
Sbjct: 69 LPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALIS 128
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G ++ A F M R + W +G+ ++ L L +
Sbjct: 129 AYSSNGCVDEAFXAFGRM--RWMRGW-------------DGSECCGVDVVSLGALVSACA 173
Query: 203 NGAVRNC----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
G NC +HG K GF + N ++ Y+ C + A ++F I +E+++
Sbjct: 174 VGCGSNCLRRGSAVHGLVVKYGF-GVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRD 232
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVG---LKPNRVTFLSVLNACSHGG 308
+VSW S+ISGF ++G + A+ FE M G ++PNRVT +++L +C+ G
Sbjct: 233 VVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELG 285
>gi|413953445|gb|AFW86094.1| hypothetical protein ZEAMMB73_140838 [Zea mays]
Length = 508
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 188/349 (53%), Gaps = 40/349 (11%)
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW----NVMITGLVKWGELEYARSLFEE 159
++ +ALV+ Y G L +S + FDELP N M++ + G + A LF
Sbjct: 118 FLASALVSSYARAGLLAESRRAFDELPAGAGAGAAAARNAMLSAYARGGRVGDAERLFAG 177
Query: 160 MPCRNVVSWTGILDGYTRMNRS-----------NGASTEPSEITILAVLPAIWQNGAVRN 208
MP R+VVSWT ++ GY + R +GA P+E+T+ +VLPA GA+
Sbjct: 178 MPDRSVVSWTAMVSGYAQNGRHEEAVRTFLDMWDGAGVRPNELTVSSVLPACAALGALAL 237
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+ + Y RG ++ V+N L++ YAKCG I A K+F + R++L SW S+I
Sbjct: 238 GRKVERYARGRGM-LRNVYVANALVEMYAKCGSIRRAWKVFRGMGT-RRDLCSWNSMIMA 295
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------- 309
FA+HG+ A+ F +++ G KP+ +TF+ V+ AC+HGGL
Sbjct: 296 FAVHGLWTEALALFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMRGEFGLKP 355
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYGC+VD+LGRAG L++A+ + +P E D V+ LLGACSFHGN E+ E K
Sbjct: 356 RIEHYGCMVDLLGRAGLLKEADSLIASMPME-PDAVIWGALLGACSFHGNFELAEIAVEK 414
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
++ +E N + V++ NI A G++ R+ +++ E++ K G S +
Sbjct: 415 LMHLEPHNTANLVILSNIYASCGKWDGVARVWKLLKEKDHKKSAGYSFI 463
>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 189/384 (49%), Gaps = 39/384 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DSFT ++ ++ G ++H++ G QS+ +V ALV MY + + F
Sbjct: 405 DSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAF 464
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGILDGYTR----- 177
DE+ ER+ TWN +I+G + ++ R L E M NV +W IL G
Sbjct: 465 DEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYD 524
Query: 178 -----MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232
N +S P T+ +L A + + + +H Y + G+++ D + L
Sbjct: 525 LAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDS-DAHIGATL 583
Query: 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292
+D YAKCG I +++ IS NLV ++++ +AMHG G+ + F RM ++P
Sbjct: 584 VDMYAKCGSIKHCYQVYNKIS--NPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRP 641
Query: 293 NRVTFLSVLNACSHGG---------------------LHYGCLVDMLGRAGRLEQAEKIA 331
+ VTFLSVL++C H G HY C+VD+L RAG+L++A ++
Sbjct: 642 DHVTFLSVLSSCVHAGSIKIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLI 701
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P E D V LLG C H V +GE K++E+E N G+YVL+ N+ A GR+
Sbjct: 702 KNMPME-ADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRW 760
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
D + R +M+++ K PG S +
Sbjct: 761 HDLAKTRELMNDKGMQKSPGCSWI 784
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 161/338 (47%), Gaps = 49/338 (14%)
Query: 3 SSNNVT--TRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
SSN++T ++HSH + T +H + LL YS+ S + A+ ++ ++ HS +
Sbjct: 43 SSNSLTLGKQLHSHSIKT-GFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWT 101
Query: 61 PLRPL-------------------------FDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
+ L D F + ++ C L LG Q+H ++
Sbjct: 102 AVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVL 161
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
K GF ++VYV AL++MY G L ++ K+ + + +++ V+WN +IT V G + A
Sbjct: 162 KHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALD 221
Query: 156 LFEEMPCR----NVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIW 201
L E M NVV+W+ ++ G++ R GA P T+ +VLPA
Sbjct: 222 LLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACS 281
Query: 202 QNGAVRNCQLIHGYGEKRGF--NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
+ + + +HGY + N F V+N L+ Y +CG + SA K+F + RK
Sbjct: 282 RMKWLFVGKELHGYIVRHELFSNGF---VANALVGMYRRCGDMKSAFKIFSKFA--RKCA 336
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
S+ ++I G+ +G A E F +M++ G++ +R+++
Sbjct: 337 ASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISW 374
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 25/242 (10%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123
P S TYS ++++ +L+ LG QLH+ K GF +H +V T L+ MY +D+
Sbjct: 30 PPLTSTTYSTILQSSNSLT---LGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAW 86
Query: 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183
+FD++ +NL +W ++ + G LFEE C +G
Sbjct: 87 HMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLC-------------------DG 127
Query: 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+ VL G + + +HG K GF ++ V N LID Y KCG +
Sbjct: 128 LGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGF-VTNVYVGNALIDMYGKCGSLD 186
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A K+ E ++ +K+ VSW SII+ +G+ A++ E M L+PN VT+ +V+
Sbjct: 187 EAKKVLEGMT--QKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGG 244
Query: 304 CS 305
S
Sbjct: 245 FS 246
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 182/363 (50%), Gaps = 47/363 (12%)
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+ C L + + G ++H ++ ++G +S+V V AL+ MY ++++FDEL +
Sbjct: 435 LHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR 494
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN MI G + G E A LF M NV +P T++
Sbjct: 495 VSWNAMILGCTQNGSSEDAVRLFSRMQLENV---------------------KPDSFTLV 533
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
+++PA+ + IHGY + + D+ V LID YAKCG + A LF S
Sbjct: 534 SIIPALADISDPLQARWIHGYSIRLHLDQ-DVYVLTALIDMYAKCGRVSIARSLFN--SA 590
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
+++++W ++I G+ HG GK AVE FE M+ G PN TFLSVL+ACSH GL
Sbjct: 591 RDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQ 650
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYG +VD+LGRAG+L +A +P E + V +LGAC
Sbjct: 651 EYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPME-PGISVYGAMLGACK 709
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H NVE+ E +++ E+E G +VL+ NI A + D R+R M+++ K PG
Sbjct: 710 LHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGW 769
Query: 413 SLV 415
S+V
Sbjct: 770 SIV 772
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 23/240 (9%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
T++ L++ C + G +HA ++ G TAL NMY D+ ++FD +
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P R+ V WN ++ G YAR+ E VV RM +G P
Sbjct: 287 PARDRVAWNALVAG--------YARNGLAEAAVGMVV----------RMQEEDG--ERPD 326
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+T+++VLPA A+ C+ +H + + GF+ + VS ++D Y KCG + SA K+F
Sbjct: 327 AVTLVSVLPACADAQALGACREVHAFAVRGGFDE-QVNVSTAILDVYCKCGAVDSARKVF 385
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
+ ++ +N VSW ++I G+A +G A+ F+RM G+ V+ L+ L+AC G
Sbjct: 386 D--GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGF 443
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 26/241 (10%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP D+ T ++ C ++HA + GF V V+TA++++Y G + +
Sbjct: 324 RP--DAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSA 381
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
K+FD + +RN V+WN MI G + G+ A +LF+ M
Sbjct: 382 RKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMV--------------------- 420
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
G + +++++LA L A + G + + +H + G + ++ V N LI Y KC
Sbjct: 421 GEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLES-NVNVMNALITMYCKCKRT 479
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A ++F+++ K VSW ++I G +G + AV F RMQ +KP+ T +S++
Sbjct: 480 DLAAQVFDELGY--KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIP 537
Query: 303 A 303
A
Sbjct: 538 A 538
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 32/224 (14%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
DSFT +I +S P +H ++ VYV TAL++MY G + + LF
Sbjct: 528 DSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLF 587
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
+ +R+++TWN MI G G + A LFEEM +S+G
Sbjct: 588 NSARDRHVITWNAMIHGYGSHGSGKVAVELFEEM-------------------KSSGKV- 627
Query: 187 EPSEITILAVLPAIWQNGAVRNCQ-----LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P+E T L+VL A G V Q + YG + G + ++D + G
Sbjct: 628 -PNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHY-----GTMVDLLGRAGK 681
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
+ A + + +E + + +++ +H + A E+ +R+
Sbjct: 682 LHEAWSFIQKMPME-PGISVYGAMLGACKLHKNVELAEESAQRI 724
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 211/413 (51%), Gaps = 55/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+L++ L+ Y+ + ++AF ++ ++ + + + + F+ S +++ C +++
Sbjct: 315 VILWSFLISRYAQSCQNEQAFEMFLRMMRSFV--------VPNEFSLSGVLQACANIAFL 366
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG Q+H + K+G++S ++V AL++MY +++S ++F L + N V+WN +I G
Sbjct: 367 ELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGY 426
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ G E A S+F EM +++S +++T +VL A
Sbjct: 427 CQSGFAEDALSVFHEMRAAHMLS---------------------TQVTFSSVLRACANTS 465
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
++++ IH EK FN D V N LIDTYAKCG I ALK+FE S+ ++VSW S
Sbjct: 466 SIKHAVQIHSLIEKSTFNN-DTIVCNSLIDTYAKCGFIRDALKVFE--SIVECDVVSWNS 522
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
IIS +A+HG A+E F+RM K +K N VTF+S+L+ C GL
Sbjct: 523 IISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDH 582
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HY C+V +LGRAGRL A K IPS + +V R LL +C H NV +G
Sbjct: 583 RIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSP-MVWRALLSSCVVHKNVALGRY 641
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
KVL++E + YVL+ N+ A G + R+ M K G S V
Sbjct: 642 AAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWV 694
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 142/346 (41%), Gaps = 57/346 (16%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG--FQSHVYVN 106
+ LQ + S P DS+ + ++ C+ G +HA + + G Q +
Sbjct: 26 EALQWLDDELASLALPKLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCA 85
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
L+N Y LG L + +LFD +PERN V++ ++ G GE E A LF
Sbjct: 86 NVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFR-------- 137
Query: 167 SWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF--NAF 224
R+ R TIL VL + G IH K G NAF
Sbjct: 138 ----------RLQREGHEVNHFVLTTILKVLVTMDAPGLACG---IHACACKLGHDRNAF 184
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
V LID Y+ CG + A +F+ I K+ V+WT+++S ++ + + + A+ F +
Sbjct: 185 ---VGTALIDAYSLCGAVCHARCVFDGIV--GKDAVTWTAMVSCYSENDIPEYALNTFSK 239
Query: 285 MQKVGLKPNRVTFLSVLNA---------------CSHGGLHY------GCLVDMLGRAGR 323
M+ G KPN S L A CS L+ G L+DM + G
Sbjct: 240 MRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGD 299
Query: 324 LEQAEKIALGIPSEITDVVVRRILLG----ACSFHGNVEMGERVTR 365
+E A I IP + DV++ L+ +C EM R+ R
Sbjct: 300 IEDAHAIFEMIPHD--DVILWSFLISRYAQSCQNEQAFEMFLRMMR 343
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 32/279 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
F TL+ Y+L ++A L+++LQ+ H + F + +++ VT+ P L
Sbjct: 116 FVTLMQGYALRGEFEEALELFRRLQR---EGHE-----VNHFVLTTILKVLVTMDAPGLA 167
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+HA K+G + +V TAL++ Y G + + +FD + ++ VTW M++ +
Sbjct: 168 CGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSEN 227
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
EYA + F +M R G P +T A+ A+ + A+
Sbjct: 228 DIPEYALNTFSKM-------------------RMTGFKPNPFVLTS-ALKAAVCLSSALL 267
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IHG K ++ + V L+D YAKCG I A +FE I +++ W+ +IS
Sbjct: 268 G-KGIHGCSVKTLYDT-EPHVGGALLDMYAKCGDIEDAHAIFEMIP--HDDVILWSFLIS 323
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+A + A E F RM + + PN + VL AC++
Sbjct: 324 RYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN 362
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 206/412 (50%), Gaps = 55/412 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+L++ ++ Y+ + ++AF L+ ++ + S SP + F+ S +++ C + +
Sbjct: 699 ILWSLMISRYAQCNQNEQAFELFIRMMR---SSVSP-----NEFSLSSVLQACANMPLLD 750
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+H K+G +S ++V AL+++Y ++ S ++F L + N V+WN +I G
Sbjct: 751 LGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYS 810
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
K G E A S+F EM AS +++T +VL A +
Sbjct: 811 KSGFGEAALSVFREM---------------------RAASVPSTQVTYSSVLRACASTAS 849
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + +H EK FN+ D VSN LID+YAKCGCI A ++FE +++ +LVSW +I
Sbjct: 850 INHVGQVHCLIEKSTFNS-DTIVSNSLIDSYAKCGCIRDAREIFE--TLKECDLVSWNAI 906
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
ISG+A+HG A E F+ M K +K N +TF+++L+ C GL
Sbjct: 907 ISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHG 966
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C+V +LGRAGRL A IPS +V R LL +C H NVE+G
Sbjct: 967 IEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSA-PSAMVWRALLSSCIVHKNVELGRFS 1025
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
KVLE+E + YVL+ N+ + G R+ M K PG S V
Sbjct: 1026 AEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWV 1077
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 135/278 (48%), Gaps = 32/278 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ ++ YS D P+ ++ +++ S L P F + ++R V LS LG
Sbjct: 600 WTAMVSCYSENDCPENTLQIFSKMRVAV----SKLNP----FALTSVLRAAVCLSSVVLG 651
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+HA K + + +V AL++MY G ++D+ F+ + +++ W++MI+ +
Sbjct: 652 KGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQC 711
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
+ E A LF RM RS S P+E ++ +VL A +
Sbjct: 712 NQNEQAFELF------------------IRMMRS---SVSPNEFSLSSVLQACANMPLLD 750
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ IH + K G + ++ V N LID YAKC + S+L++F S+ N VSW +II
Sbjct: 751 LGKQIHNHAIKIGHES-ELFVGNALIDLYAKCSDMESSLEIFS--SLRDVNEVSWNTIIV 807
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
G++ G G+AA+ F M+ + +VT+ SVL AC+
Sbjct: 808 GYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACA 845
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 51/289 (17%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG--FQSHVYVNTALVNMYVSLGFLKD 121
P DS+ Y+ L++ CV G +H + + G + ++ L+NMY +G
Sbjct: 424 PGVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGS 483
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ ++FD LPERN+V++ ++ G GE E A +LF+ + W G
Sbjct: 484 AHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRL------RWEG----------- 526
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF--NAFDIRVSNCLIDTYAKC 239
E ++ + VL + + +H K G NAF V + LID Y+ C
Sbjct: 527 ----HEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAF---VGSALIDAYSMC 579
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + A ++F+ I K+ V+WT+++S ++ + + ++ F +M+ K N S
Sbjct: 580 GVVSDARRVFDGIV--GKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTS 637
Query: 300 VL---------------NACSHGGLH------YGCLVDMLGRAGRLEQA 327
VL +ACS L+ YG L+DM + G +E A
Sbjct: 638 VLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDA 686
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 181/341 (53%), Gaps = 37/341 (10%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
+L++ YV ++D+ LFD +P +++VTW MI G K G + A+ LF+EMP R+VV+
Sbjct: 229 SLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVA 288
Query: 168 WTGILDGYTRM-----------NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216
+ ++ GY + + + P E T++ VL AI Q G + IH Y
Sbjct: 289 YNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYI 348
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
F ++ LIDTY+KCG I ++++FE+I E K++ W ++I G A+HG+G+
Sbjct: 349 MDNKFR-LGGKLGVALIDTYSKCGSIQKSMRVFEEI--ENKSIDHWNAMIGGLAIHGLGE 405
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
+A + +++K +KP+ +TF+ VLNACSH GL HYGC+
Sbjct: 406 SAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCM 465
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+L R+G +E A+ + +P E D V+ R L ACS H E GE V + + N
Sbjct: 466 VDILSRSGSIELAKNLIEEMPIEPND-VIWRTFLTACSNHKEFETGELVAKHLFLQGGYN 524
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+VL+ N+ A G + + R+R M ER K PG S +
Sbjct: 525 PSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWI 565
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 191/399 (47%), Gaps = 65/399 (16%)
Query: 12 HSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY 71
H + +++ S+ L+N ++ +S P+ A LL+ + + +S S D F+
Sbjct: 45 HEYHVSSYSVEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIE---NSVS-----VDKFSI 96
Query: 72 SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131
S +++ C L + + G Q+H + K G S +++ L+ +Y+ G L + ++FD +P+
Sbjct: 97 SLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQ 156
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTR----MNRSNGAS 185
R+ V++N MI G VK G +E AR LF+ MP +N++SW ++ GYT+ +N ++
Sbjct: 157 RDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLF 216
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF----------DIRVSNCLIDT 235
E E +++ W + LI GY + R D+ +ID
Sbjct: 217 DEMPEKDLIS-----WNS-------LIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDG 264
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNR 294
YAK G + A KLF+++ ++++V++ S+++G+ + A+ F M+K L P+
Sbjct: 265 YAKLGFVHQAKKLFDEMP--QRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDE 322
Query: 295 VTFLSVLNACSH---------------------GGLHYGCLVDMLGRAGRLEQAEKIALG 333
T + VL+A + GG L+D + G ++++ ++
Sbjct: 323 TTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEE 382
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
I ++ D ++G + HG +GE +L++E+
Sbjct: 383 IENKSID--HWNAMIGGLAIHG---LGESAFDMLLQIEK 416
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 29/245 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+++ Y +A ++ +++ S L P D T ++ L +
Sbjct: 289 YNSMMAGYVQNKYHAEAIGIFNDMEK-----ESHLSP--DETTLVIVLSAIAQLGRLSKA 341
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+H I F+ + AL++ Y G ++ S ++F+E+ +++ WN MI GL
Sbjct: 342 VDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIH 401
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G E A + ++ R++ +P +IT + VL A +G V+
Sbjct: 402 GLGESAFDMLLQIEKRSI---------------------KPDDITFIGVLNACSHSGLVK 440
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
L ++ ++ C++D ++ G I A L E++ +E N V W + ++
Sbjct: 441 EGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIE-PNDVIWRTFLT 499
Query: 268 GFAMH 272
+ H
Sbjct: 500 ACSNH 504
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 220/431 (51%), Gaps = 89/431 (20%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT----LS 82
++N L SLA ++ +Y+++ I S D FTY+++++ CV +S
Sbjct: 138 VYNALFRALSLAGHGEEVLNMYRRMNSIGIPS--------DRFTYTYVLKACVASECFVS 189
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
N G ++HA I + G+ +V++ T LV+MY G + ++S
Sbjct: 190 LLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNAS------------------- 230
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE--------------- 187
+F +MP +NVVSW+ ++ Y + NG + E
Sbjct: 231 ------------CVFNQMPVKNVVSWSAMIACYAK----NGKAFEALELFRELMLETQDL 274
Query: 188 -PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
P+ +T+++VL A A+ +LIHGY ++G ++ + V + L+ YA+CG +
Sbjct: 275 CPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSI-LPVISALVTMYARCGKLELGQ 333
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++F+ + +++++VSW S+IS + +HG GK A+ FE M G++P+ ++F+SVL ACSH
Sbjct: 334 RVFDQM--DKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSH 391
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VD+LGRA RLE+A KI + E V
Sbjct: 392 AGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWG 451
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LLG+C H NVE+ ER + ++ ++E N G+YVL+ +I A G + +R++++++ R
Sbjct: 452 S-LLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEAR 510
Query: 405 NALKFPGRSLV 415
K PGRS +
Sbjct: 511 GLQKVPGRSWI 521
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 144/344 (41%), Gaps = 47/344 (13%)
Query: 36 SLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
S AD+ K L KQ L P TY LI +C + ++H +
Sbjct: 38 STADNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLL 97
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
+ GF ++ T L+NMY + ++ K+FD+ R + +N + L G E
Sbjct: 98 ENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGE---- 153
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL-AVLPAIWQNGAVRNCQLIHG 214
+L+ Y RMN S + +L A + + + + IH
Sbjct: 154 --------------EVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHA 199
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
+ + G++ + + + L+D YAK GC+ +A +F + V KN+VSW+++I+ +A +G
Sbjct: 200 HILRHGYDGY-VHIMTTLVDMYAKFGCVSNASCVFNQMPV--KNVVSWSAMIACYAKNGK 256
Query: 275 GKAAVENFER--MQKVGLKPNRVTFLSV------LNACSHGGLHYG-------------- 312
A+E F ++ L PN VT +SV L A G L +G
Sbjct: 257 AFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVI 316
Query: 313 -CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
LV M R G+LE +++ + DVV L+ + HG
Sbjct: 317 SALVTMYARCGKLELGQRVFDQMDKR--DVVSWNSLISSYGVHG 358
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/413 (32%), Positives = 206/413 (49%), Gaps = 55/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T+ +N L+ Y A LL++Q+ + P+ +S T LI CV+
Sbjct: 108 TVCYNALVSGYVSNSKCSDAVLLFRQMNE----EGVPV----NSVTLLGLIPACVSPINL 159
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG+ LH K GF S V V + MY+ G + + KLFDE+P + L++WN M++G
Sbjct: 160 ELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGY 219
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+ G T +L+ Y M+ NG +P +T++ VL + G
Sbjct: 220 AQNG------------------LATNVLELYRNMDM-NGVHPDP--VTLVGVLSSCANLG 258
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A + + GF + + ++N LI+ YA+CG + A +F+ + + LVSWT+
Sbjct: 259 AQSVGHEVEFKMQASGFTS-NPFLNNALINMYARCGNLTKAQAVFDGMP--ERTLVSWTA 315
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
II G+ MHG G+ AV+ F+ M + G++P+ F+ VL+ACSH GL
Sbjct: 316 IIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNY 375
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HY C+VD+LGRAGRL++A+ + +P + D V LLGAC H NVE+ E
Sbjct: 376 QLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK-PDGAVWGALLGACKIHKNVELAEL 434
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+V+E+E N G YVL+ NI + R+R +M E+ K PG S V
Sbjct: 435 AFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 487
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 165/349 (47%), Gaps = 57/349 (16%)
Query: 43 KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
+A LY Q+ + H P ++FT+ F +++C LS P LG+Q H I+KVG
Sbjct: 23 QALSLYPQMLR---HGDRP-----NAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFE 74
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDE-LPERNL-VTWNVMITGLVKWGELEYARSLFEEM 160
+V T L++MY + ++ K+F+E R L V +N +++G V + A LF +M
Sbjct: 75 PFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQM 134
Query: 161 PCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
N + +T+L ++PA + +H K G
Sbjct: 135 ---------------------NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG 173
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
F++ D+ V NC I Y KCG + A KLF+++ V K L+SW +++SG+A +G+ +E
Sbjct: 174 FDS-DVSVVNCFITMYMKCGSVNYAQKLFDEMPV--KGLISWNAMVSGYAQNGLATNVLE 230
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHY---------------------GCLVDMLG 319
+ M G+ P+ VT + VL++C++ G L++M
Sbjct: 231 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYA 290
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368
R G L +A+ + G+P +V ++G HG+ E+ ++ ++++
Sbjct: 291 RCGNLTKAQAVFDGMPERT--LVSWTAIIGGYGMHGHGEIAVQLFKEMI 337
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 235/453 (51%), Gaps = 73/453 (16%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQLQQIYT-- 56
R+H+H++ T L T L LL FY D P+K + + + Y+
Sbjct: 72 RVHAHMIKTR-YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQT 130
Query: 57 -HSHSPLRPLFD---------SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106
HS L + FT++ ++ +C+ S LG Q+H +I K + SH++V
Sbjct: 131 GHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVG 190
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
++L++MY G ++++ ++F+ LPER++V+ +I G + G E A +F+ +
Sbjct: 191 SSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSE--- 247
Query: 167 SWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226
G+ Y T S +T L+ L A+ +G +C ++ +R + +
Sbjct: 248 ---GMRPNYV---------TYASLLTALSGL-ALLDHGKQAHCHVL-----RRELPFYAV 289
Query: 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286
+ N LID Y+KCG + A +LF+++ + +SW +++ G++ HG+G+ +E F M+
Sbjct: 290 -LQNSLIDMYSKCGNLSYAQRLFDNMP--ERTAISWNAMLVGYSKHGLGREVLELFRLMR 346
Query: 287 -KVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDMLGRAG 322
+ +KP+ VT L+VL+ CSHG + HYGC+VDMLGRAG
Sbjct: 347 DEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAG 406
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382
R+++A + +PS+ T V+ LLGAC H +V++GE V +++E+E N G+YV++
Sbjct: 407 RIDEAFEFIKRMPSKPTAGVLGS-LLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILS 465
Query: 383 NILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+ A GR+ D +R +M ++ K PGRS +
Sbjct: 466 NLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWI 498
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 183/397 (46%), Gaps = 69/397 (17%)
Query: 27 LFNTL-LHFYSLADSPKKAFLLYKQLQQIYTHSHSP--------LRPLFDSFTYSFLIRT 77
+FN + L S + SP ++ + Q+ ++ L P Y L+
Sbjct: 1 MFNLMRLIHRSFSSSPNSVLQTFRPISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNA 60
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C+ G ++HA + K + Y+ T L+ Y L+D+ K+ DE+PE+N+V+W
Sbjct: 61 CLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 120
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
MI+ + G A S+F E M RS+G +P+E T VL
Sbjct: 121 TAMISRYSQTGHSSEALSVFAE------------------MMRSDG---KPNEFTFATVL 159
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
+ + + + IHG K +++ I V + L+D YAK G I A ++FE + +
Sbjct: 160 TSCIRASGLALGKQIHGLIVKWNYDSH-IFVGSSLLDMYAKAGQIEEAREIFE--CLPER 216
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS------HGGLHY 311
++VS T+II+G+A G+ + A+E F+R+Q G++PN VT+ S+L A S HG +
Sbjct: 217 DVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAH 276
Query: 312 ---------------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G L A+++ +P E T + +L+G S HG
Sbjct: 277 CHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP-ERTAISWNAMLVGY-SKHG- 333
Query: 357 VEMGERVTRKVLEM------ERGNGGDYVLMYNILAG 387
+ R+VLE+ E+ D V + +L+G
Sbjct: 334 ------LGREVLELFRLMRDEKRVKPDAVTLLAVLSG 364
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 197/430 (45%), Gaps = 47/430 (10%)
Query: 23 HH----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC 78
HH + ++NT++ S P A L+ + SP P D ++ L+
Sbjct: 92 HHPRPNSFMWNTVIRALSDGARPDAAVALFVDMLS------SPTPP--DRRSFPSLLAAY 143
Query: 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
L G LH + K+G YV A + MY S G ++ LF + PE ++V N
Sbjct: 144 ARLGRAGDGEALHGMALKLGLAGDAYVRNATIAMYASCGRADEALALFGQCPELDVVACN 203
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
+I L + G ++ ARS+F+ MP R V +W+ ++ Y R R + A EP
Sbjct: 204 SVIVALARAGRVDEARSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEP 263
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ +++VL GA+ +H Y ++ G A + V L+D Y KCG + A ++
Sbjct: 264 NANVLVSVLGCCASLGALVQGAWVHEYIDRHGV-AMNALVVTALVDMYCKCGSVDDARQV 322
Query: 249 FEDI-SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
F+ S L SW S++ G A+HG + AV F ++ GL P+ VTF++VL A H
Sbjct: 323 FDAARSQGLAKLSSWNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIAVLTAYGHS 382
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
G+ HYGCLVD L RAGRL +AE +P D +
Sbjct: 383 GMPDEAQAAFASMSSEHGVEPGIEHYGCLVDALARAGRLREAEDAIRAMPMA-PDAAIWG 441
Query: 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405
LL C HG+ E+G R R+ + + + G YVL ++LA G +R M E
Sbjct: 442 ALLSGCRLHGDAELGARAAREAVRCDPRDSGAYVLAASVLARGGDPGRGAGIRGRMREAG 501
Query: 406 ALKFPGRSLV 415
K PG S++
Sbjct: 502 VGKVPGSSMI 511
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 52/292 (17%)
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD---SSKLFDELPERNL 134
CV++++ QLHA + K G + V G +D + +L P N
Sbjct: 44 CVSMAHLR---QLHAALVKSGLAKDPIAASRAVAFCAGPG--RDVLYAERLVRHHPRPNS 98
Query: 135 VTWNVMITGLVKWGELEYARSLFEEM------PCRNVVSWTGILDGYTRMNRSNGASTEP 188
WN +I L + A +LF +M P R S+ +L Y R+ R+ +
Sbjct: 99 FMWNTVIRALSDGARPDAAVALFVDMLSSPTPPDRR--SFPSLLAAYARLGRAG----DG 152
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA---------FDIRVSNCLIDTYAKC 239
+ +A+ + + VRN + R A D+ N +I A+
Sbjct: 153 EALHGMALKLGLAGDAYVRNATIAMYASCGRADEALALFGQCPELDVVACNSVIVALARA 212
Query: 240 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299
G + A +F+ ++ + + +W++++S +A A+ F MQ G++PN +S
Sbjct: 213 GRVDEARSVFD--AMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVS 270
Query: 300 VLNACS-----------------HG----GLHYGCLVDMLGRAGRLEQAEKI 330
VL C+ HG L LVDM + G ++ A ++
Sbjct: 271 VLGCCASLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQV 322
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/416 (31%), Positives = 203/416 (48%), Gaps = 46/416 (11%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
L + + + +++ Y + A LL+K + T DS ++ C +
Sbjct: 1205 LRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 1264
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
S + +H + K GF + V L++ Y G S K+FD + E++ ++WN MI
Sbjct: 1265 SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMI 1324
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+ G A +F M V G+ R N +T+ AVL A
Sbjct: 1325 AVYAQSGLSGEALEVFHGM-----VRHVGV--------RYNA-------VTLSAVLLACA 1364
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
GA+R + IH K +++ V +ID Y KCG + A K F+ ++ KN+ S
Sbjct: 1365 HAGALRAGKCIHDQVIKMDLE-YNVCVGTSIIDMYCKCGRVEMAKKTFD--RMKEKNVKS 1421
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
WT++++G+ MHG K A++ F +M + G+KPN +TF+SVL ACSH GL
Sbjct: 1422 WTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK 1481
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HYGC+VD+ GRAG L +A + + + D VV LLGAC H NV++
Sbjct: 1482 HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMK-PDFVVWGSLLGACRIHKNVDL 1540
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
GE +K+ E++ N G YVL+ N+ A GR+ D ER+R +M R +K PG SLV
Sbjct: 1541 GEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLV 1596
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 194/375 (51%), Gaps = 63/375 (16%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLL------------FNTLLHFYSLADSPKKAFLLYKQ 50
S++ + TR HL +T+ + + +L +N ++ ++ ++A +LYK
Sbjct: 56 SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKN 115
Query: 51 L--QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
+ Q I D FT+ F+I+ C +LG +H + K GF V+V
Sbjct: 116 MVCQGIAA----------DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L++ Y G + + K+F+++ RN+V+W +I+GL+ G+L+ AR +F+E+P +NVVSW
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225
Query: 169 TGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T +++GY R R + P+E T+++++ A + G + + IH Y K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285
Query: 219 RGFNAFDIRV--SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
N +I V LID Y+KCG I A+++FE ++ RK+L +W S+I+ +HG+G+
Sbjct: 286 ---NCIEIGVYLGTALIDMYSKCGSIKDAIEVFE--TMPRKSLPTWNSMITSLGVHGLGQ 340
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNAC-----------------SHGGL-----HYGCL 314
A+ F M++V +KP+ +TF+ VL AC H G+ HY C+
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECM 400
Query: 315 VDMLGRAGRLEQAEK 329
++ R+ L++A K
Sbjct: 401 TELYARSNNLDEAFK 415
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 144/282 (51%), Gaps = 38/282 (13%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++ I++C L G H GF++ ++V++AL++MY G LKD+ LFDE+
Sbjct: 1144 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 1203
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P RN+V+W MITG V+ + + A LF++ L+ T + N +
Sbjct: 1204 PLRNVVSWTSMITGYVQNEQADNALLLFKDF-----------LEEETEVEDGNNVPLD-- 1250
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ +++VL A + + +HG+ K+GF+ I V N L+D YAKCG + K+F
Sbjct: 1251 SVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG-SIGVGNTLMDAYAKCGQPLVSKKVF 1309
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACSHGG 308
+ +E K+ +SW S+I+ +A G+ A+E F M + VG++ N VT +VL AC+H G
Sbjct: 1310 D--WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 1367
Query: 309 ----------------LHYGC-----LVDMLGRAGRLEQAEK 329
L Y ++DM + GR+E A+K
Sbjct: 1368 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 145/352 (41%), Gaps = 80/352 (22%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
FL++ C + Q+HA I + G + + L+++Y + G + + LF ++
Sbjct: 32 FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
TWN++I G E A L++ M C+ + + + T
Sbjct: 89 CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA---------------------DKFT 127
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
V+ A ++ +++HG K GF+ D+ V N LID Y KCG ALK+FE +
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSG-DVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Query: 253 SVER-----------------------------KNLVSWTSIISGFAMHGMGKAAVENFE 283
V KN+VSWT++I+G+ + + A+E F+
Sbjct: 187 RVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFK 246
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL--------HYG-------------CLVDMLGRAG 322
RMQ + PN T +S++ AC+ G+ Y L+DM + G
Sbjct: 247 RMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCG 306
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
++ A ++ +P + + ++ + HG +G+ EMER N
Sbjct: 307 SIKDAIEVFETMPRK--SLPTWNSMITSLGVHG---LGQEALNLFSEMERVN 353
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGC 313
V++ N+ SW S+I+ A G A+ F ++K+GL P R +F + +CS
Sbjct: 1102 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCS-------A 1154
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
L D++ +GR+ + G TD+ V L+ S G ++
Sbjct: 1155 LCDLV--SGRMSHQQAFVFGFE---TDLFVSSALIDMYSKCGQLK 1194
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 195/383 (50%), Gaps = 38/383 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T + C L +G +++ + F+ V ALV+M+ G L + +F
Sbjct: 131 DEGTIVSTLSACSVLKNLEIGERIYRYVV-TEFEMSVRTGNALVDMFCKCGCLDKARAIF 189
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN---- 182
D + ++N+ W M++G V G + AR LFE P ++VV WT +++GY + NR +
Sbjct: 190 DSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALE 249
Query: 183 ------GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
A P ++++L Q GA+ + IHGY + D V L+D Y
Sbjct: 250 LFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTV-DKVVGTALVDMY 308
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI +AL +F ++ + ++ SWTS+I G A +GM A++ + M+ VG++ + +T
Sbjct: 309 AKCGCIETALGVFYEM--KERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDIT 366
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F++VL ACSHGG HY CL+D+L RAG L++AE++ +
Sbjct: 367 FVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKM 426
Query: 335 PSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
E T V V LL A +GNV++ ERV K+ ++E + + L+ ++ A R+
Sbjct: 427 HGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWE 486
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
D +RR M + KFPG S +
Sbjct: 487 DVTNVRRKMKDLGIRKFPGCSSI 509
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 86/318 (27%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+FT ++++ L G ++H K G +S YV +L+ MY +LG ++ + K+F
Sbjct: 29 DNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLMGMYAALGKMEITHKVF 88
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+PER++V+WN +I+ V G E A S+F+ M S ++
Sbjct: 89 DEMPERDVVSWNGLISSYVGHGRFEDAISVFQRM--------------------SRESNL 128
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGE---KRGFNAFD--IRVSNCLIDTYAKCGC 241
+ E TI++ L A ++N ++ GE + F+ +R N L+D + KCGC
Sbjct: 129 KADEGTIVSTLSAC---SVLKNLEI----GERIYRYVVTEFEMSVRTGNALVDMFCKCGC 181
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER----------------- 284
+ A +F+ S+ KN+ WTS++SG+ +G A E FER
Sbjct: 182 LDKARAIFD--SMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYV 239
Query: 285 --------------MQKVGLKPNRVTFLSVLNACSH-GGLHYG----------------- 312
MQ ++P+ +S+L C+ G L G
Sbjct: 240 QFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKV 299
Query: 313 ---CLVDMLGRAGRLEQA 327
LVDM + G +E A
Sbjct: 300 VGTALVDMYAKCGCIETA 317
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
G P T+ VL +I + V + +HGY K G + D V N L+ YA G +
Sbjct: 23 GQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLES-DSYVCNSLMGMYAALGKM 81
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVL 301
K+F+++ +++VSW +IS + HG + A+ F+RM ++ LK + T +S L
Sbjct: 82 EITHKVFDEMP--ERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTL 139
Query: 302 NACS 305
+ACS
Sbjct: 140 SACS 143
>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
Length = 630
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 191/373 (51%), Gaps = 52/373 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ + SF ++ S QLHA + ++G + V + T L++ Y G + + K+F
Sbjct: 153 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVF 212
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSL-------FEEMPCRNVVSWTGILDGYTRMN 179
DE+P R++ TWN ++ GL + E A L F E+P R
Sbjct: 213 DEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRELPPRE--------------- 257
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAK 238
EP+ +T++A L A Q G +++ +H + R A D + V N LID Y+K
Sbjct: 258 -------EPNAVTVVAALSACAQLGTLKDGLAVHEFA--RTIGAVDNVCVGNALIDMYSK 308
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
CG + AL++F I +E + LVS+ + I ++HG G+ A++ F+ M ++P+ +T+L
Sbjct: 309 CGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEM-PARIEPDEITYL 367
Query: 299 SVLNACSHGGL------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
+V+ C+H GL HYG +VD+LGRAGRL +A + + +P D
Sbjct: 368 AVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFP-AD 426
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+V+ + LLGA HGNV++ E K+ ++ GDYVL+ N+ A R+VD R+R
Sbjct: 427 IVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDT 486
Query: 401 MDERNALKFPGRS 413
M + K PG S
Sbjct: 487 MRSNDVKKVPGFS 499
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 35/362 (9%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +H + + G + V + ALV+M+ G + + ++FD +P +++ +W M++
Sbjct: 251 LGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYA 310
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILA 195
K G+LE A LF+E+P RN VSW+ ++ Y++ N A EP + T+++
Sbjct: 311 KCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVS 370
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A Q G + + ++ + +SN ID +AKCG + +A +LF ++ E
Sbjct: 371 VLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNM--E 428
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
KN+VSW ++I A+HG + A+ F++ + +G+ P+ +T++ VL+ACSH GL
Sbjct: 429 DKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRY 488
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HY C++D+LG+ G LE+A ++A +P D LL AC
Sbjct: 489 HFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVG-ADEAGWGALLNACRM 547
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
HGNVE+G+ K++ ++ + G YVLM I A ++ + +R VM +R K PG S
Sbjct: 548 HGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCS 607
Query: 414 LV 415
+
Sbjct: 608 SI 609
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 184/396 (46%), Gaps = 72/396 (18%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+ T++ + A P A L++++ + R D+ T F ++ T S P
Sbjct: 99 MLATMMRGFLRAGKPAHALALFRRVLRD--------RLPADARTIVFAVKAATTSSSP-- 148
Query: 87 GTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+H V K GF V V ALV+MY S L D+ KLFDE+ +R++V+W ++ G
Sbjct: 149 AEAIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYA 208
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G + A +F CR VV+ G P+E+T++A A Q G
Sbjct: 209 RGGLPDEAWRVF----CRMVVAGGGW----------------PNEVTLVAAASAAGQIGL 248
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ +++H + G + + N L+D + KCGC+ SA ++F+ + + K++ SWTS+
Sbjct: 249 LGLGRMVHQCVVESGVR-MSVNLENALVDMFGKCGCVASAKEIFDGMPI--KDVYSWTSM 305
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLE 325
+S +A G + A + F+ + PNR NA S + C+V +A E
Sbjct: 306 VSAYAKCGDLENAGKLFKEI------PNR-------NAVS-----WSCMVAAYSQANLPE 347
Query: 326 QA-----EKIALGI-PSEITDVVVRRILLGACSFHGNVEMGER------VTRKVLEMERG 373
+A + IA G+ P + T V V L AC+ G +++G V+ KV E+
Sbjct: 348 EAMRIFNDMIAAGVEPIDATLVSV----LSACAQLGCLDVGRCLYDAYIVSHKV-ELTVN 402
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
++ M+ VG A RL R M+++N + +
Sbjct: 403 LSNAFIDMFAKCGDVGA---ASRLFRNMEDKNVVSW 435
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 214/427 (50%), Gaps = 64/427 (14%)
Query: 20 SLLHH------TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSF 73
SLL H T+ +N ++ YS +DSP++A L+ ++++ +RP ++ T+ F
Sbjct: 85 SLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRR------RGVRP--NNLTFPF 136
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
L++ C TL+ G Q HA+ K G VYV L+ Y S + + K+FDE+ ER
Sbjct: 137 LLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERT 196
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI 193
LV+WN +IT V+ F+E +D + +M EP E T+
Sbjct: 197 LVSWNAVITACVE-------NFCFDE-----------AIDYFLKMGNHG---FEPDETTM 235
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
+ +L A + G + + +H RG ++++ +D YAK G + A +F
Sbjct: 236 VVILSACAELGNLSLGRWVHSQVVGRGM-VLNVQLGTAFVDMYAKSGDVGCARHVFN--C 292
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---- 309
+++K++ +W+++I G A HG A+E F M + PN VTF+ VL ACSH GL
Sbjct: 293 LKQKSVWTWSAMILGLAQHGFANEAIELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKS 352
Query: 310 ------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351
HYG +VD+LGRAG++++A ++ + +P E D +V R LL AC
Sbjct: 353 YHYFNLMERVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPVE-PDPIVWRTLLSAC 411
Query: 352 S---FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
S +G E+ E +++LE+E GG+ V++ N A +G + A RR M +R K
Sbjct: 412 SGRDVNGGAEVAEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKK 471
Query: 409 FPGRSLV 415
G S +
Sbjct: 472 MAGESCI 478
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/468 (31%), Positives = 229/468 (48%), Gaps = 87/468 (18%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHF--YSLADSPKKAFLLYKQ---------- 50
+S N +IHSH++ N L HH +FN LL F S+ S A LL+ +
Sbjct: 16 NSMNKLRKIHSHVII-NGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAW 74
Query: 51 --LQQIYTHSHSPLRPLF-------------DSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
L + ++ S SPL + D FT+SF ++ C + +LH +
Sbjct: 75 NYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVI 134
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
+ GF + V+T LV Y + G ++ +SK+FDE+P R+LV+WN MI+ G A S
Sbjct: 135 RSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFS 194
Query: 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215
++ M V +D Y TI+A+L + A+ ++H
Sbjct: 195 MYSRMANEGVC-----VDAY----------------TIVALLSSCAHVSALNMGVMLHRI 233
Query: 216 GEKRGFNAFDIR------VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
A DIR V N LID YAKCG + +A+ +F+ + ++++++W S+I G+
Sbjct: 234 -------ACDIRCESSVFVCNALIDMYAKCGSLENAVGVFK--GMRKRDVLTWNSMIIGY 284
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
+HG G A+ F +M G++PN VTFL +L CSH GL
Sbjct: 285 GVHGHGVEAISFFRKMVASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPN 344
Query: 310 --HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367
HYGC+VD+ GRAG+LE+A ++ + S D V+ R LLG+C H N+E+GE +K+
Sbjct: 345 VKHYGCMVDLFGRAGQLEKALEM-IHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKL 403
Query: 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++E N GDYVLM +I + +R+++ + PG S +
Sbjct: 404 VQLEAFNAGDYVLMTSIYSAANDAQGFASMRKLIRSHDLRTIPGWSWI 451
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 203/412 (49%), Gaps = 56/412 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+LL Y+ ++A ++ +L++ S P D + ++ C L LG
Sbjct: 186 WNSLLSGYAKLGFAREAVEVFGRLRE-----ESGFEP--DEMSLVSVLGACGELGDLELG 238
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + + G + + Y+ +AL++MY G L S ++FD +P R+ +TWN I+ +
Sbjct: 239 RWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A SLF M + NG +P+++T+ AVL A GA+
Sbjct: 299 GMADEAISLFHSM-------------------KENG--VDPNKVTLTAVLSACASIGALD 337
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + Y RG DI V+ LID YAKCG + SA ++F D+ RKN SW ++IS
Sbjct: 338 LGKQMDEYATHRGLQ-HDIFVATALIDMYAKCGSLESAQRVFNDMP--RKNDASWNAMIS 394
Query: 268 GFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSHGGL---------------- 309
A HG K A+ FERM G +PN +TF+S+L+AC H GL
Sbjct: 395 ALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFG 454
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C+VD+L RAG L +A + +P E D V L AC NV++GERV
Sbjct: 455 LVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMP-EKPDNVTLGALHSACQRKKNVDIGERV 513
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +LE++ N G+Y++ I + + DA R+R +M E K PG S +
Sbjct: 514 IQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWI 565
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 46/354 (12%)
Query: 52 QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111
Q+ T + SP ++FT+ F+ C L + H + K+G + + ++V
Sbjct: 106 HQMKTLNISP-----NNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVT 160
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY G + K+FDE+ E++LV+WN +++G K G +AR E
Sbjct: 161 MYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLG---FAREAVEV------------ 205
Query: 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
+ R+ +G EP E+++++VL A + G + + + G+ +RG + + +
Sbjct: 206 ---FGRLREESG--FEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV-NSYIGSA 259
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LI Y+KCG + S+ ++F+ + ++ ++W + IS +A +GM A+ F M++ G+
Sbjct: 260 LISMYSKCGELVSSRRIFD--GMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317
Query: 292 PNRVTFLSVLNAC-SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
PN+VT +VL+AC S G L G +D L+ D+ V L+
Sbjct: 318 PNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQH-------------DIFVATALIDM 364
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL-RRVMDE 403
+ G++E +RV +M R N + M + LA G+ +A L R+ DE
Sbjct: 365 YAKCGSLESAQRVFN---DMPRKNDASWNAMISALASHGKAKEALSLFERMSDE 415
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 47/447 (10%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
SPS N +++L+ T + ++NT++ +S + P+ A ++ + S
Sbjct: 70 SPSDRN-----YAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDM----LCSSP 120
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
++P TY + + +L G QLH + K G + ++ +++MYV+ G L
Sbjct: 121 SVKP--QRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLV 178
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
++ +LF + ++V WN +I GL K G ++ A+ LF+EMP RN VSW ++ G+ R R
Sbjct: 179 EAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGR 238
Query: 181 SNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
A +P T++++L A GA + IH Y + F I ++
Sbjct: 239 FKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITA 298
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LID Y KCGC LK+FE K L W S+I G A +G + A++ F +++ GL
Sbjct: 299 -LIDMYCKCGCFEEGLKVFE--CAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGL 355
Query: 291 KPNRVTFLSVLNACSHGG----------------------LHYGCLVDMLGRAGRLEQAE 328
+P+ V+F+ VL AC+H G HY C+V++LG AG L++AE
Sbjct: 356 EPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAE 415
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P E D ++ LL AC +GNVEM +R + ++ YVLM N A
Sbjct: 416 ALIKKMPVE-GDTIIWSSLLAACRKNGNVEMAKRAANCLKNLDPDETCGYVLMSNAYASY 474
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
G + +A R +M ER K G S +
Sbjct: 475 GLFEEAVEQRLLMKERQMEKEVGCSSI 501
>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
gi|224028917|gb|ACN33534.1| unknown [Zea mays]
Length = 596
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 191/373 (51%), Gaps = 52/373 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D+ + SF ++ S QLHA + ++G + V + T L++ Y G + + K+F
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVF 178
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSL-------FEEMPCRNVVSWTGILDGYTRMN 179
DE+P R++ TWN ++ GL + E A L F E+P R
Sbjct: 179 DEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRELPPRE--------------- 223
Query: 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAK 238
EP+ +T++A L A Q G +++ +H + R A D + V N LID Y+K
Sbjct: 224 -------EPNAVTVVAALSACAQLGTLKDGLAVHEFA--RTIGAVDNVCVGNALIDMYSK 274
Query: 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298
CG + AL++F I +E + LVS+ + I ++HG G+ A++ F+ M ++P+ +T+L
Sbjct: 275 CGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEM-PARIEPDEITYL 333
Query: 299 SVLNACSHGGL------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
+V+ C+H GL HYG +VD+LGRAGRL +A + + +P D
Sbjct: 334 AVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFP-AD 392
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400
+V+ + LLGA HGNV++ E K+ ++ GDYVL+ N+ A R+VD R+R
Sbjct: 393 IVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDT 452
Query: 401 MDERNALKFPGRS 413
M + K PG S
Sbjct: 453 MRSNDVKKVPGFS 465
>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
Length = 674
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/410 (30%), Positives = 202/410 (49%), Gaps = 55/410 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+L+N ++ Y+L KAF ++K ++ D FT++ +I +C L
Sbjct: 245 VLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKG--------DXFTFTSMINSCGVLGSCG 296
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG Q+H +I ++ F V V +ALV+MY ++D+ K FD + +N+V+W M G
Sbjct: 297 LGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYG 356
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G+ + L +EM + YT P E+ + ++L + A
Sbjct: 357 QHGDGKEXMRLLQEM-----------IRVYTY----------PDELALASILSSCGNLSA 395
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+H Y + GF AF + ++N L+ Y+KCG I SA + F SV +++SWTS+
Sbjct: 396 TSEVVQVHAYVVENGFEAF-LSIANALVSAYSKCGSIGSAFQSFS--SVAEPDIISWTSL 452
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
+ +A HG+ K V+ FE++ ++P++V FL VL+AC+HGG
Sbjct: 453 MGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQ 512
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY ++D+LGRAG L++A + +P E + LGAC + NV +
Sbjct: 513 IMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGA-FLGACKVYRNVGLARWA 571
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ K+ ME G Y LM N+ A VG + D R+R++M ER K PG S
Sbjct: 572 SEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCS 621
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 170/352 (48%), Gaps = 71/352 (20%)
Query: 70 TYSF---LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
T+SF ++ L + + G QLHA + K+G + + + ++++YV D K+F
Sbjct: 72 THSFSSHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMF 131
Query: 127 DELPERNLVTWNVMITGLVKWGELEYA---------RSLFEEMPCRNVVSWTGILDGYTR 177
DE+P +N+V+WN +I G+V+ G ++A R + EM N ++ G+L
Sbjct: 132 DEMPLKNVVSWNTLICGVVE-GNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLR---- 186
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
AS E +++ I C+ +H + K GF++ + V + L+D+YA
Sbjct: 187 ------ASIELNDVGI---------------CRQLHCFILKSGFDS-NCFVGSALVDSYA 224
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
K G + A F+++S ++LV W ++S +A++G+ A F+ M+ G+K + TF
Sbjct: 225 KFGLVDEAQSAFDEVS--SRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTF 282
Query: 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
S++N+C +LG G +Q + + + ++ DV+V L+ S + N+
Sbjct: 283 TSMINSCG-----------VLGSCGLGKQVHGLIIRLSFDL-DVLVASALVDMYSKNENI 330
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNILA------GVGRYVDAERLRRVMDE 403
E RK D +J+ NI++ G G++ D + R++ E
Sbjct: 331 E----DARKAF--------DGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQE 370
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 140/324 (43%), Gaps = 49/324 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ T + L+R + L+ + QLH I K GF S+ +V +ALV+ Y G + ++ F
Sbjct: 177 NCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAF 236
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+ R+LV WNVM++ C + G G ++ R G
Sbjct: 237 DEVSSRDLVLWNVMVS-------------------CYALNGVQGKAFGVFKLMRLEGVKG 277
Query: 187 EPSEITILAVLPAIWQNGAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+ T + I G + +C L +HG + F+ D+ V++ L+D Y+K I
Sbjct: 278 DXFTFTSM-----INSCGVLGSCGLGKQVHGLIIRLSFD-LDVLVASALVDMYSKNENIE 331
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A K F+ + V KN+VSWT++ G+ HG GK + + M +V P+ + S+L++
Sbjct: 332 DARKAFDGMJV--KNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSS 389
Query: 304 CS-----------HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT--------DVVVR 344
C H + L A L A I S D++
Sbjct: 390 CGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISW 449
Query: 345 RILLGACSFHGNVEMGERVTRKVL 368
L+GA +FHG + G V K+L
Sbjct: 450 TSLMGAYAFHGLSKQGVDVFEKIL 473
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/366 (33%), Positives = 191/366 (52%), Gaps = 40/366 (10%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G +H + K G S V++AL++MY + S++FD++ ++ + N I GL
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 146 KWGELEYARSLFEEMPCR----NVVSWTGILDGYTRMNRS----------NGASTEPSEI 191
+ G++E + LF ++ + NVVSWT ++ ++ R A +P+ +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSV 387
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
TI +LPA A+ + + H + +RG + D+ V + LID YAKCG I ++ F+
Sbjct: 388 TIPCLLPACGNIAALMHGKAAHCFSLRRGIST-DVYVGSALIDMYAKCGRIQASRICFDG 446
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
I KNLV W ++I+G+AMHG K A+E F+ MQ+ G KP+ ++F VL+ACS GL
Sbjct: 447 IPT--KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTE 504
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HY C+V +L RAG+LEQA + +P D V LL
Sbjct: 505 EGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVN-PDACVWGALLS 563
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+C H NV +GE K+ E+E N G+Y+L+ NI A G + + R+R +M + K
Sbjct: 564 SCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKN 623
Query: 410 PGRSLV 415
PG S +
Sbjct: 624 PGCSWI 629
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 195/444 (43%), Gaps = 99/444 (22%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYS----LADS-------PKK----------AFL 46
T + H+H+L T L + T L LL Y+ AD+ P+ AF
Sbjct: 32 TRQAHAHILKTG-LFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFS 90
Query: 47 LYKQLQQ-IYTHSHSPLRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104
+ Q + T S R L D+ ++ C LS Q+H + S GF S +
Sbjct: 91 KFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSF 150
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM---- 160
V ++LV+MY+ ++D+ ++FD + E ++V+W+ ++ + G ++ A+ LF EM
Sbjct: 151 VQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSG 210
Query: 161 --PCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRN 208
P N++SW G++ G+ + A EP TI +VLPA+ +
Sbjct: 211 VQP--NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVM 268
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC----------------------IF--- 243
LIHGY K+G + D VS+ LID Y KC C IF
Sbjct: 269 GILIHGYVIKQGLVS-DKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 244 ------SALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
S+L+LF + + N+VSWTS+I+ + +G A+E F MQ G+KPN V
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSV 387
Query: 296 TFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T +L AC + L +G L+DM + GR++ + GI
Sbjct: 388 TIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGI 447
Query: 335 PSEITDVVVRRILLGACSFHGNVE 358
P++ ++V ++ + HG +
Sbjct: 448 PTK--NLVCWNAVIAGYAMHGKAK 469
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 208/420 (49%), Gaps = 58/420 (13%)
Query: 20 SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL-FDSFTYSFLIRTC 78
S T+ + L++ Y D P +A + +++ LR D+ T + ++R
Sbjct: 168 SPFQDTVAWTALINGYVKNDCPGEALKCFVKMR---------LRDRSVDAVTVASILRAA 218
Query: 79 VTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
+ + G +H + G Q YV +AL++MY G +D+ K+F+ELP R++V W
Sbjct: 219 ALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCW 278
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVL 197
V++ G V+ + + A F +M NV P++ T+ +VL
Sbjct: 279 TVLVAGYVQSNKFQDALRAFWDMLSDNVA---------------------PNDFTLSSVL 317
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ +L+H Y E N ++ + L+D YAKCG I AL++FE++ V K
Sbjct: 318 SACAQMGALDQGRLVHQYIECNKIN-MNVTLGTALVDMYAKCGSIDEALRVFENMPV--K 374
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N+ +WT II+G A+HG A+ F M K G++PN VTF+ VL ACSHGG
Sbjct: 375 NVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLF 434
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VDMLGRAG LE A++I +P + + V+ L GAC H
Sbjct: 435 ELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGA-LFGACLVHK 493
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
EMGE + ++ + + G Y L+ N+ + A ++R++M +K PG S +
Sbjct: 494 AFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRVVKAPGYSRI 553
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 165/376 (43%), Gaps = 60/376 (15%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P S N T + T N+ +T L N ++ + P + L Y +L+Q
Sbjct: 55 PFSQNQNTCLLLLFDTINT--PNTRLLNKMI---AACSHPHISLLCYAKLRQ------KG 103
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
++P D T+ L++T + S ++A I K+GF +++ AL+ + + GF++
Sbjct: 104 VQP--DKHTFPLLLKT-FSKSIAQNPFMIYAQIFKLGFDLDLFIGNALIPAFANSGFVES 160
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ ++FDE P ++ V W +I G VK A F +M R +RS
Sbjct: 161 ARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLR---------------DRS 205
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A +T+ ++L A G + +HG+ + G D V + L+D Y KCG
Sbjct: 206 VDA------VTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGH 259
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
A K+F ++ +++V WT +++G+ + A+ F M + PN T SVL
Sbjct: 260 CEDACKVFNELP--HRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVL 317
Query: 302 NACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITD 340
+AC+ G L G LVDM + G +++A ++ +P + +
Sbjct: 318 SACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMP--VKN 375
Query: 341 VVVRRILLGACSFHGN 356
V +++ + HG+
Sbjct: 376 VYTWTVIINGLAVHGD 391
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/366 (33%), Positives = 191/366 (52%), Gaps = 40/366 (10%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G +H + K G S V++AL++MY + S++FD++ ++ + N I GL
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 146 KWGELEYARSLFEEMPCR----NVVSWTGILDGYTRMNRS----------NGASTEPSEI 191
+ G++E + LF ++ + NVVSWT ++ ++ R A +P+ +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSV 387
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
TI +LPA A+ + + H + +RG + D+ V + LID YAKCG I ++ F+
Sbjct: 388 TIPCLLPACGNIAALMHGKAAHCFSLRRGIST-DVYVGSALIDMYAKCGRIQASRICFDG 446
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
I KNLV W ++I+G+AMHG K A+E F+ MQ+ G KP+ ++F VL+ACS GL
Sbjct: 447 IPT--KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTE 504
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HY C+V +L RAG+LEQA + +P D V LL
Sbjct: 505 EGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVN-PDACVWGALLS 563
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
+C H NV +GE K+ E+E N G+Y+L+ NI A G + + R+R +M + K
Sbjct: 564 SCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKN 623
Query: 410 PGRSLV 415
PG S +
Sbjct: 624 PGCSWI 629
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 195/444 (43%), Gaps = 99/444 (22%)
Query: 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYS----LADS-------PKK----------AFL 46
T + H+H+L T L + T L LL Y+ AD+ P+ AF
Sbjct: 32 TRQAHAHILKTG-LFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFS 90
Query: 47 LYKQLQQ-IYTHSHSPLRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104
+ Q + T S R L D+ ++ C LS Q+H + S GF S +
Sbjct: 91 KFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSF 150
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM---- 160
V ++LV+MY+ ++D+ ++FD + E ++V+W+ ++ + G ++ A+ LF EM
Sbjct: 151 VQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSG 210
Query: 161 --PCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRN 208
P N++SW G++ G+ + A EP TI +VLPA+ +
Sbjct: 211 VQP--NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVM 268
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC----------------------IF--- 243
LIHGY K+G + D VS+ LID Y KC C IF
Sbjct: 269 GILIHGYVIKQGLVS-DKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327
Query: 244 ------SALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
S+L+LF + + N+VSWTS+I+ + +G A+E F MQ G+KPN V
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSV 387
Query: 296 TFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGI 334
T +L AC + L +G L+DM + GR++ + GI
Sbjct: 388 TIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGI 447
Query: 335 PSEITDVVVRRILLGACSFHGNVE 358
P++ ++V ++ + HG +
Sbjct: 448 PTK--NLVCWNAVIAGYAMHGKAK 469
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 117/248 (47%), Gaps = 28/248 (11%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGT--QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
L DS ++ L C+ + +L Q HA I K G + ++ T L++ Y + D+
Sbjct: 10 LLDSVQHTIL--NCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADA 67
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+ + D +PE N+ +++ +I K+ + +A S F +M R ++ +L
Sbjct: 68 TLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVL---------- 117
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
PS + A L A+ + + +HG GF++ D V + L+ Y KC I
Sbjct: 118 -----PSAVKACAGLSAL------KPARQVHGIASVSGFDS-DSFVQSSLVHMYIKCNQI 165
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
A ++F+ + ++VSW+++++ +A G A F M G++PN +++ ++
Sbjct: 166 RDAHRVFDRMF--EPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIA 223
Query: 303 ACSHGGLH 310
+H GL+
Sbjct: 224 GFNHSGLY 231
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 199/386 (51%), Gaps = 42/386 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T S ++ L +G Q+H + K G S +V +A+++MY G +K+ S++F
Sbjct: 239 DGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVF 298
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGILDGYTRMNRSN 182
DE+ E + + N +TGL + G ++ A +F + + NVV+WT I+ ++ +
Sbjct: 299 DEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDL 358
Query: 183 GA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNC 231
A EP+ +TI +++PA A+ + + IH + +RG F+ D+ V +
Sbjct: 359 EALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD--DVYVGSA 416
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LID YAKCG I A + F+ +S NLVSW +++ G+AMHG K +E F M + G K
Sbjct: 417 LIDMYAKCGRIQLARRCFDKMSA--LNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQK 474
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+ VTF VL+AC+ GL HY CLV +L R G+LE+A
Sbjct: 475 PDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYS 534
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
I +P E D V LL +C H N+ +GE K+ +E N G+Y+L+ NI A G
Sbjct: 535 IIKEMPFE-PDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKG 593
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
+ + R+R VM + K PG S +
Sbjct: 594 LWDEENRIREVMKSKGLRKNPGYSWI 619
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 201/417 (48%), Gaps = 55/417 (13%)
Query: 16 LTTNSLLHHTLLFN--TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSF 73
LT +S L H LF+ +L+H ++ + + + ++H H PLR + D+F
Sbjct: 58 LTLSSHLPHPTLFSFSSLIHAFARSHH-------FPHVLTTFSHLH-PLRLIPDAFLLPS 109
Query: 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN 133
I++C +L + G QLHA + GF + V ++L +MY+ + D+ KLFD +P+R+
Sbjct: 110 AIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRD 169
Query: 134 LVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGILDGYTRMNRSNGASTEPS 189
+V W+ MI G + G +E A+ LF EM N+VSW G+L G+ +NG E
Sbjct: 170 VVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFG----NNGFYDEAV 225
Query: 190 EITILAVLPAIWQNGAVRNCQL--------------IHGYGEKRGFNAFDIRVSNCLIDT 235
+ + ++ W +G+ +C L +HGY K+G + D V + ++D
Sbjct: 226 GMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGS-DKFVVSAMLDM 284
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295
Y KCGC+ ++F++ VE + S + ++G + +GM A+E F + + ++ N V
Sbjct: 285 YGKCGCVKEMSRVFDE--VEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVV 342
Query: 296 TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
T+ S++ +CS G L L R + E A+ IPS L+ AC
Sbjct: 343 TWTSIIASCSQNGKDLEAL--ELFRDMQAYGVEPNAVTIPS----------LIPACGNIS 390
Query: 356 NVEMGERVTRKVLEMERGNGGD-YV--LMYNILAGVGRYVDAERLRRVMDERNALKF 409
+ G+ + + RG D YV + ++ A GR + RR D+ +AL
Sbjct: 391 ALMHGKEI--HCFSLRRGIFDDVYVGSALIDMYAKCGRI---QLARRCFDKMSALNL 442
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 214/396 (54%), Gaps = 40/396 (10%)
Query: 53 QIYTHS-HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111
Q+Y+ H + P D++ + +++ C + G ++H+ K+G S+ V ++
Sbjct: 133 QLYSRMLHDSILP--DNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIME 190
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
+Y G L D+ ++F+E+PE ++V VMI+ G +E A ++F + ++ V WT +
Sbjct: 191 LYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAM 249
Query: 172 LDGYTR---MNRS-------NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
+DG+ R MNR+ G + P+E TI+ VL A Q GA+ + +H Y K
Sbjct: 250 IDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI 309
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
++ V N LI+ Y++CG I A +F+++ + ++++++ ++ISG +M+G + A+E
Sbjct: 310 E-LNLFVGNALINMYSRCGSIDEAQTVFDEM--KDRDVITYNTMISGLSMNGKSRQAIEL 366
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
F M L+P VTF+ VLNACSHGGL HYGC+VD+LG
Sbjct: 367 FRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLG 426
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
R GRLE+A + + D ++ LL AC H N+E+GE+V + + + + + G YV
Sbjct: 427 RVGRLEEAYDLIRTMKM-TPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYV 485
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
L+ ++ A G++ +A ++R M E K PG S +
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 75/289 (25%)
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDG-------------YTRMNRSNGASTEPSEIT 192
K ++YA +F+ NV +T ++DG Y+RM S P
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHD---SILPDNYL 149
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
+ ++L A A+R + +H K G ++ + V +++ Y KCG + A ++FE++
Sbjct: 150 MASILKACGSQLALREGREVHSRALKLGLSSNRL-VRLRIMELYGKCGELGDARRVFEEM 208
Query: 253 S----------------------------VERKNLVSWTSIISGFAMHGMGKAAVENFER 284
V RK+ V WT++I GF + A+E F
Sbjct: 209 PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRG 268
Query: 285 MQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGR 323
MQ ++PN T + VL+ACS G L G L++M R G
Sbjct: 269 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 328
Query: 324 LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
+++A+ + + DV+ ++ S +G +R+ +E+ R
Sbjct: 329 IDEAQTVFDEMKDR--DVITYNTMISGLSMNGK-------SRQAIELFR 368
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 36/182 (19%)
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
QLI + F F+ L+ + +KC I A ++F+ N+ +T++I GF
Sbjct: 71 QLIRNGHSQDPFMVFE------LLRSCSKCHAIDYASRIFQ--YTHNPNVYLYTALIDGF 122
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG----------------GLHYGC 313
G A++ + RM + P+ S+L AC GL
Sbjct: 123 VSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNR 182
Query: 314 LV-----DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG----ERVT 364
LV ++ G+ G L A ++ +P DVV +++ + S G VE RV
Sbjct: 183 LVRLRIMELYGKCGELGDARRVFEEMPE---DVVASTVMISSYSDQGLVEEAGAVFSRVR 239
Query: 365 RK 366
RK
Sbjct: 240 RK 241
>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Glycine max]
Length = 644
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 200/412 (48%), Gaps = 55/412 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+++N ++ Y+L P++AF+++ ++ + D FT+S L+ C +L Y +
Sbjct: 225 VVWNVMISCYALNCLPEEAFVMFNLMRWDGANG--------DEFTFSNLLSICDSLEYYD 276
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H I ++ F S V V +AL+NMY + D+ +LFD + RN+V WN +I G
Sbjct: 277 FGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYG 336
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
E L EM + +G++ P E+TI + + A
Sbjct: 337 NRREGNEVMKLLREM----------LREGFS-----------PDELTISSTISLCGYVSA 375
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ H + K F F + V+N LI Y+KCG I SA K F +LVSWTS+
Sbjct: 376 ITETMQAHAFAVKSSFQEF-LSVANSLISAYSKCGSITSACKCFR--LTREPDLVSWTSL 432
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------- 309
I+ +A HG+ K A E FE+M G+ P++++FL VL+ACSH GL
Sbjct: 433 INAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFNLMTSVYK 492
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY CLVD+LGR G + +A + +P E + + +C+ H N+ + +
Sbjct: 493 IVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGA-FVASCNLHANIGLAKWA 551
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
K+ +E +Y +M NI A + D ER+RR+M + + PG S +
Sbjct: 552 AEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWI 603
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G QLHA + K GF + + ++ +Y+ D+ KLF+EL RN+V+WN++I G+V
Sbjct: 69 GKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVG 128
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
G+ S + C ++ R P T + + +
Sbjct: 129 CGDANENDS--NQQQC------------FSYFKRMLLELVVPDSTTFNGLFGVCVKFHDI 174
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+H + K G + D V + L+D YA+CG + +A ++F + V+ ++LV W +I
Sbjct: 175 DMGFQLHCFAVKLGLD-LDCFVGSVLVDLYAQCGLVENARRVF--LVVQHRDLVVWNVMI 231
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
S +A++ + + A F M+ G + TF ++L+ C
Sbjct: 232 SCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICD 270
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 33/167 (19%)
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
+H + K GF + + N ++ Y KC A KLFE++SV +N+VSW +I G
Sbjct: 72 LHAHLIKFGF-CHVLSLQNQILGVYLKCTEADDAEKLFEELSV--RNVVSWNILIRGIVG 128
Query: 272 HGMGKAAVEN-------FERMQKVGLKPNRVTFLSVLNACSHG----------------G 308
G N F+RM + P+ TF + C G
Sbjct: 129 CGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLG 188
Query: 309 LHYGC-----LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
L C LVD+ + G +E A ++ L + D+VV +++
Sbjct: 189 LDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHR--DLVVWNVMISC 233
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 191/363 (52%), Gaps = 37/363 (10%)
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGL 144
LG+ +HA+ K G +YV AL + Y G + +FDELP R++VTWN ++ G
Sbjct: 148 LGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGY 207
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
V+ G + AR +FEEMP R+ VSW+ ++ GY + + A +E ++
Sbjct: 208 VRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVV 267
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A Q G + + + +H ++ G + V L+D ++KCGC+ A ++F+ +
Sbjct: 268 TALSAAAQMGLLEHGRFVHEVVQRTGM-PVSVNVGAALVDMFSKCGCVAVAREVFD--GM 324
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
R+++ +W ++I G A HG+G+ AVE F R GL P +TF+ VLNACS GL
Sbjct: 325 PRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGR 384
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG + +A ++ G+ D V+ +L AC
Sbjct: 385 RYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGM-HIAPDPVLWGTVLSACK 443
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H V++G V K++E+E + G YVL+ +I A ++ + +R++M R K G
Sbjct: 444 THNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGW 503
Query: 413 SLV 415
SL+
Sbjct: 504 SLM 506
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 182/369 (49%), Gaps = 47/369 (12%)
Query: 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128
FT+ ++R+C +L P G Q+HA I K +V TALV+MY L+D+ FD
Sbjct: 254 FTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDR 313
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
L R++ +W V+I+G + + E A F +M + +P
Sbjct: 314 LVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGI---------------------KP 352
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+E T+ + L + N + +H K G DI V + L+D Y KCGC+ A +
Sbjct: 353 NEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG-DIFVGSALVDLYGKCGCMEHAEAI 411
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F+ + +++VSW +IISG++ HG G+ A+E F M G+ P+ TF+ VL+ACS G
Sbjct: 412 FKGLI--SRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMG 469
Query: 309 L----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346
L HY C+VD+LGRAG+ + KI + + ++
Sbjct: 470 LVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEV-KIFIEEMNLTPYSLIWET 528
Query: 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406
+LGAC HGNV+ GE+ +K+ EME Y+L+ NI A GR+ D +R +M R
Sbjct: 529 VLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGI 588
Query: 407 LKFPGRSLV 415
K PG S V
Sbjct: 589 KKEPGCSWV 597
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 131/278 (47%), Gaps = 32/278 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N LL+ Y+ KK L+ ++++ T F FT S +++ C G
Sbjct: 19 WNALLNGYAQLGDGKKVLKLFCKMKECETK--------FSKFTLSTVLKGCANTGSLREG 70
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LHA+ + G + ++ +LV+MY G + D+ K+F ++ ++V W+ MITGL +
Sbjct: 71 KVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQ 130
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A LF M R GA P++ T+ +++ G +R
Sbjct: 131 GHGQEAAELFHLM-------------------RRKGA--RPNQFTLSSLVSTATNMGDLR 169
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
Q IHG K GF + D VSN LI Y K C+ K+FE ++ +LVSW +++S
Sbjct: 170 YGQSIHGCICKYGFES-DNLVSNPLIMMYMKSRCVEDGNKVFE--AMTNPDLVSWNALLS 226
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
GF F +M G KPN TF+SVL +CS
Sbjct: 227 GFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS 264
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 14/174 (8%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSEITILAVLPA 199
+E A LF MP +N VSW +L+GY ++ + T+ S+ T+ VL
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G++R +++H + G D + L+D Y+KCG ++ ALK+F I ++
Sbjct: 61 CANTGSLREGKVLHALALRSGCE-IDEFLGCSLVDMYSKCGTVYDALKVFTKI--RNPDV 117
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN-ACSHGGLHYG 312
V+W+++I+G G G+ A E F M++ G +PN+ T S+++ A + G L YG
Sbjct: 118 VAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 51/271 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+ ++ Y+ D +KA ++Q+Q+ ++P + +T + + C ++ G
Sbjct: 322 WTVIISGYAQTDQAEKAVKYFRQMQR------EGIKP--NEYTLASCLSGCSHMATLENG 373
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLHAV K G ++V +ALV++Y G ++ + +F L R++V+WN +I+G +
Sbjct: 374 RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQH 433
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G+ E A F RM S G P E T + VL A G V
Sbjct: 434 GQGEKALEAF-------------------RMMLSEG--IMPDEATFIGVLSACSFMGLVE 472
Query: 208 NCQLIHGYGEKR--------GFNAFDIRVSNCLIDTYAKCGCIFSALKLF-EDISVERKN 258
G+KR G N I C++D + G F+ +K+F E++++ +
Sbjct: 473 E-------GKKRFDSMSKIYGINP-SIEHYACMVDILGRAG-KFNEVKIFIEEMNLTPYS 523
Query: 259 LVSWTSIISGFAMHG---MGKAAVENFERMQ 286
L+ W +++ +HG G+ A + M+
Sbjct: 524 LI-WETVLGACKLHGNVDFGEKAAKKLFEME 553
>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
Length = 573
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 198/384 (51%), Gaps = 38/384 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKL 125
D Y + +C QLHA +K GF SH V LV+ Y G L + ++
Sbjct: 77 DPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRCRLVHAYAVCGMLPHARRV 136
Query: 126 FDELPERNLVTWNVMITGLVK-WGELEYARSLFEEMPCRNVVSWTGIL---------DGY 175
FD + ++V WN ++ G + G+ + R F MP R+ VSW +L D
Sbjct: 137 FDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNTVLSLCVVNGEYDEA 196
Query: 176 TRMNRSNGASTE--PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
+ R AS E P +T+++V+ AI GA+ H Y ++G + ++S+ LI
Sbjct: 197 IAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKGVE-VEEKLSSALI 255
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ Y+KCG + A+ +F+++ +R +L +W ++++GF +G A+ F RM+ GL PN
Sbjct: 256 NMYSKCGFLEGAVYVFDNVRGKR-SLDTWNAMLAGFTANGCSGRALALFTRMETTGLMPN 314
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
++TF +LNACSHGGL HYGC+VD+ RAG E+AE+I
Sbjct: 315 KITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRAGMFEKAEEII 374
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P E D + + LLGAC H N+E+G++ +++E + YVL+ NI A G +
Sbjct: 375 QIMPME-PDASMLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAGYVLLSNIYALDGNW 433
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
++R++M +R LK PG S V
Sbjct: 434 GRVHKVRKLMLDRGVLKTPGSSSV 457
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 211/409 (51%), Gaps = 55/409 (13%)
Query: 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
+T++ Y L +KA +++ L + ++P ++ T + ++ C ++S LG
Sbjct: 413 STVISGYVLNGMSEKALQMFRYLLE------QCIKP--NAVTVASVLPACASISALPLGQ 464
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
++H + + ++ YV +AL++MY G L S +F ++ ++ VTWN MI+ + G
Sbjct: 465 EIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNG 524
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208
E + A LF +M C + + + T S ++ A LPAI+
Sbjct: 525 EPQEALDLFRQM-CMEGIKYNNV--------------TISSALSACASLPAIYYG----- 564
Query: 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 268
+ IHG K A DI + LID YAKCG + AL++FE + KN VSW SIIS
Sbjct: 565 -KEIHGVIIKGPIKA-DIFAESALIDMYAKCGNMELALRVFE--FMPDKNEVSWNSIISA 620
Query: 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------- 309
+ HG+ K +V RMQ+ G KP+ VTFL++++AC+H GL
Sbjct: 621 YGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAP 680
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
H+ C+VD+ R+GRL++A + +P + D + LL AC H NVE+ + +++
Sbjct: 681 RMEHFACMVDLYSRSGRLDKAIQFIADMPFK-PDAGIWGALLHACRVHRNVELADIASQE 739
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +++ GN G YVLM NI A GR+ ++RR+M + LK PG S V
Sbjct: 740 LFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWV 788
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 135/279 (48%), Gaps = 30/279 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+L +N L+ ++ A A L Y ++ +TH P P D+ T +++++C L
Sbjct: 104 SLPWNWLIRGFTAAGHHSLAVLFYVKM---WTH---PAAPSPDAHTLPYVVKSCAALGAV 157
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
+LG +H G S VYV +AL+ MY G L+D+ FD +P R+ V WNVM+ G
Sbjct: 158 SLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGY 217
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
+K G++ A LF M R +G EP+ T+ L
Sbjct: 218 IKAGDVGGAVRLFRNM-------------------RVSG--CEPNFATLACFLSVCAAEA 256
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
+ + +H K G ++ V+N L+ YAKC C+ A +LFE + R +LV+W
Sbjct: 257 DLLSGVQLHSLAVKCGLEQ-EVAVANTLLSMYAKCRCLDDAWRLFE--LLPRDDLVTWNG 313
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
+ISG +G+ A+ F M + G +P+ VT +S+L A
Sbjct: 314 MISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPA 352
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 55/337 (16%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+L+N ++ Y A A L++ ++ S P F T + + C +
Sbjct: 208 VLWNVMMDGYIKAGDVGGAVRLFRNMRV------SGCEPNFA--TLACFLSVCAAEADLL 259
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH++ K G + V V L++MY L D+ +LF+ LP +LVTWN MI+G V
Sbjct: 260 SGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCV 319
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G L+ A LF +M +GA P +T++++LPA+
Sbjct: 320 QNGLLDEALGLFCDM-------------------LRSGA--RPDSVTLVSLLPALTDLNG 358
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
++ + +HGY + + D + + L+D Y KC + +A L++ + ++V +++
Sbjct: 359 LKQGKEVHGYIIRNCVH-MDAFLVSALVDIYFKCRDVRTARNLYD--AARAIDVVIGSTV 415
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-----------HG------- 307
ISG+ ++GM + A++ F + + +KPN VT SVL AC+ HG
Sbjct: 416 ISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAY 475
Query: 308 -GLHY--GCLVDMLGRAGRLEQAEKI--ALGIPSEIT 339
G Y L+DM + GRL+ + I + + E+T
Sbjct: 476 EGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVT 512
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 154/348 (44%), Gaps = 51/348 (14%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
RP DS T L+ L+ G ++H I + ++ +ALV++Y ++ +
Sbjct: 340 RP--DSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTA 397
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
L+D ++V + +I+G V G E A +F + + +
Sbjct: 398 RNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCI----------------- 440
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
+P+ +T+ +VLPA A+ Q IHGY + + V + L+D YAKCG +
Sbjct: 441 ----KPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEG-KCYVESALMDMYAKCGRL 495
Query: 243 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302
+ +F +S+ K+ V+W S+IS F+ +G + A++ F +M G+K N VT S L+
Sbjct: 496 DLSHYIFSKMSL--KDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALS 553
Query: 303 AC-SHGGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDV 341
AC S ++YG L+DM + G +E A ++ +P + +
Sbjct: 554 ACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDK--NE 611
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
V ++ A HG V+ E V+ E G D+V +++
Sbjct: 612 VSWNSIISAYGAHGLVK--ESVSFLHRMQEEGYKPDHVTFLALISACA 657
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 111/265 (41%), Gaps = 29/265 (10%)
Query: 74 LIRTCVTLSYPNLGTQLHA---VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130
L+R CV+ + LG Q+HA V + +H+ ++T L+ MYV +D+ +F LP
Sbjct: 38 LLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97
Query: 131 ER---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187
+ + WN +I G G A + +M WT + A+
Sbjct: 98 RAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKM-------WT------------HPAAPS 138
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
P T+ V+ + GAV +L+H G A D+ V + LI Y+ G + A
Sbjct: 139 PDAHTLPYVVKSCAALGAVSLGRLVHRTARATGL-ASDVYVGSALIKMYSDAGLLRDARD 197
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC-SH 306
F+ + ++ V W ++ G+ G AV F M+ G +PN T L+ C +
Sbjct: 198 AFD--GMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAE 255
Query: 307 GGLHYGCLVDMLGRAGRLEQAEKIA 331
L G + L LEQ +A
Sbjct: 256 ADLLSGVQLHSLAVKCGLEQEVAVA 280
>gi|356576967|ref|XP_003556601.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Glycine max]
Length = 453
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 180/330 (54%), Gaps = 36/330 (10%)
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L ++ +LF +PER++ +WN MITG ++ G+L YA LF EM +N ++WT ++ GY +
Sbjct: 93 LHEALELFQGMPERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQH 152
Query: 179 NRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
S A +P+ T + VL A + Q IH K F D
Sbjct: 153 GLSEEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQ--DSX 210
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+ LI+ Y KCG + +A +F+D + +++L+SW +I+G+A HG GK A+ F MQ+
Sbjct: 211 ICGTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQE 270
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
+G+ N VTF+ +L ACSH G+ HY CLVD+ R GRL+
Sbjct: 271 LGVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRLK 330
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+A I G+ E + + V +LL C+ HGNV++G+ V +K+L++E N G + L+ N+
Sbjct: 331 EAFNIIEGLGKE-SPLTVWGVLLARCNVHGNVDIGKLVAKKILKIEPQNAGTHSLLSNMY 389
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A VG++ +A +R M+++ K PG S +
Sbjct: 390 ASVGKWKEAANIRMKMNDKGLKKQPGYSWI 419
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 33/175 (18%)
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191
++V+W M+ GL+K G +E AR+LF+ MP RNVVSW ++ G+ + R + A
Sbjct: 44 EDVVSWTTMVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEA------- 96
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
+L G E+ D+ N +I + + G + A KLF +
Sbjct: 97 -----------------LELFQGMPER------DMHSWNTMITGFIQNGKLNYAEKLFGE 133
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACS 305
+ KN ++WT+++ G+ HG+ + A++ F +M GLKPN TF++VL ACS
Sbjct: 134 M--REKNAITWTAMMMGYVQHGLSEEALKVFNKMLANDGLKPNTGTFVTVLRACS 186
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 58 SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117
++ L+P ++ T+ ++R C L+ G Q+H +ISK FQ T L+NMY G
Sbjct: 167 ANDGLKP--NTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQDSXICGT-LINMYPKCG 223
Query: 118 FLKDSSKLFDE--LPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGI 171
L + +FD+ L +R+L++WN MI G G + A +LF EM C N V++ G+
Sbjct: 224 ELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQELGVCANDVTFVGL 283
Query: 172 L 172
L
Sbjct: 284 L 284
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 203/412 (49%), Gaps = 56/412 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N+LL Y+ ++A ++ +L++ S P D + ++ C L LG
Sbjct: 186 WNSLLSGYAKLGFAREAVEVFGRLRE-----ESGFEP--DEMSLVSVLGACGELGDLELG 238
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + + G + + Y+ +AL++MY G L S ++FD +P R+ +TWN I+ +
Sbjct: 239 RWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
G + A SLF M + NG +P+++T+ AVL A GA+
Sbjct: 299 GMADEAISLFHSM-------------------KENG--VDPNKVTLTAVLSACASIGALD 337
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + Y RG DI V+ LID YAKCG + SA ++F D+ RKN SW ++IS
Sbjct: 338 LGKQMDEYATHRGLQ-HDIFVATALIDMYAKCGSLESAQRVFNDMP--RKNDASWNAMIS 394
Query: 268 GFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSHGGL---------------- 309
A HG K A+ FERM G +PN +TF+S+L+AC H GL
Sbjct: 395 ALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFG 454
Query: 310 ------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HY C+VD+L RAG L +A + +P E D V L AC NV++GERV
Sbjct: 455 LVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMP-EKPDNVTLGALHSACQRKKNVDIGERV 513
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ +LE++ N G+Y++ I + + DA R+R +M E K PG S +
Sbjct: 514 IQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWI 565
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 46/354 (12%)
Query: 52 QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111
Q+ T + SP ++FT+ F+ C L + H + K+G + + ++V
Sbjct: 106 HQMKTLNISP-----NNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVT 160
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY G + K+FDE+ E++LV+WN +++G K G +AR E
Sbjct: 161 MYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLG---FAREAVEV------------ 205
Query: 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
+ R+ +G EP E+++++VL A + G + + + G+ +RG + + +
Sbjct: 206 ---FGRLREESG--FEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV-NSYIGSA 259
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LI Y+KCG + S+ ++F+ + ++ ++W + IS +A +GM A+ F M++ G+
Sbjct: 260 LISMYSKCGELVSSRRIFD--GMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317
Query: 292 PNRVTFLSVLNAC-SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
PN+VT +VL+AC S G L G +D L+ D+ V L+
Sbjct: 318 PNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQH-------------DIFVATALIDM 364
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL-RRVMDE 403
+ G++E +RV +M R N + M + LA G+ +A L R+ DE
Sbjct: 365 YAKCGSLESAQRVFN---DMPRKNDASWNAMISALASHGKAKEALSLFERMSDE 415
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 206/414 (49%), Gaps = 61/414 (14%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+NT++ + AF YK++ + + D+FT+SFL++ L
Sbjct: 121 FLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAA--------DNFTFSFLLKMTGQLGSIM 172
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG QLH I K+G SHVYV L++MY L + + LFDELP+ +LV WN +I V
Sbjct: 173 LGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHV 232
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
G A LF +M V EP E T++ + A GA
Sbjct: 233 SCGMYNEALDLFVQMLQSGV---------------------EPDEATLVVTISACSALGA 271
Query: 206 VRNCQLIHGY--GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
+ + +H + RG I V N LID YAKCG + A ++F +V KN+V+W
Sbjct: 272 LDCGRWVHSHVNSNDRGKT---IAVFNSLIDMYAKCGAVEYAREMFN--AVSGKNIVTWN 326
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGG-------------- 308
++I G A HG + A+ F M ++ P+ VTFL+VL AC++GG
Sbjct: 327 TMIMGLATHGDAEDALTLFSNMLAERVETPDGVTFLAVLCACNYGGKVEEGRRYFDLMTK 386
Query: 309 --------LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
HYG +VD+LGRAG +E+A ++ +P E + V+ R LL AC HGNVE+G
Sbjct: 387 HFNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSMPME-CNAVIWRTLLAACQMHGNVELG 445
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK-FPGRS 413
ERV+ VLE+ + DYVL+ N+ A G++ + + R+ M + K PG S
Sbjct: 446 ERVSSHVLEIVADHSSDYVLLANMYASSGQWNEMIKTRKSMHRKGVEKPEPGNS 499
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 145/355 (40%), Gaps = 53/355 (14%)
Query: 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYV--SLGFLKDSSKLFDE 128
+ FL + C TL N QLHA I ++GF +++V L++ G + + +FD
Sbjct: 58 FMFLFKQCSTLKDLN---QLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDR 114
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
+ + WN MI G + +L A ++ M + + +
Sbjct: 115 IENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAA--------------------- 153
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
T +L Q G++ + +H K G ++ + V N LI Y + + A L
Sbjct: 154 DNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLDS-HVYVRNTLIHMYGRLKDVNIARNL 212
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
F+++ + +LV+W ++I GM A++ F +M + G++P+ T + ++ACS G
Sbjct: 213 FDELP--KTDLVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVVTISACSALG 270
Query: 309 -------LH--------------YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
+H + L+DM + G +E A ++ + + ++V +
Sbjct: 271 ALDCGRWVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGK--NIVTWNTM 328
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
+ + HG+ E + +L ER D V +L E RR D
Sbjct: 329 IMGLATHGDAEDALTLFSNMLA-ERVETPDGVTFLAVLCACNYGGKVEEGRRYFD 382
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 201/386 (52%), Gaps = 40/386 (10%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHA----VISKVGFQSHVYVNTALVNMYVSLGFLKD 121
D FT++ +I C LG ++HA ++ + VN AL+ Y G +
Sbjct: 287 LDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDI 346
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM--- 178
+ ++F+++PER+LV+WN++++G V ++ A+S F EMP +N++SW ++ G ++
Sbjct: 347 AQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFA 406
Query: 179 -------NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
NR EP + + + G++++ + +H + G+ + + N
Sbjct: 407 EEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYES-SLSAGNA 465
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291
LI YA+CG + +A LF I++ + +SW ++I+ HG G A+E FE M K G+
Sbjct: 466 LITMYARCGVVDAAHCLF--INMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGIL 523
Query: 292 PNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEK 329
P+R++FL+V++ACSH GL HY ++D+L RAG+ +A++
Sbjct: 524 PDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKE 583
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
+ +P E + LL C HGN+++G ++ E++ + G YVL+ N+ A G
Sbjct: 584 VMESMPFE-PGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAG 642
Query: 390 RYVDAERLRRVMDERNALKFPGRSLV 415
++ D ++R++M +R K PG S +
Sbjct: 643 QWNDMAKVRKLMRDRGVKKEPGCSWI 668
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/428 (23%), Positives = 170/428 (39%), Gaps = 87/428 (20%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTY-SFLIRTCVT 80
+ ++ +N ++ YS A L+ +Q+ RP D++T+ S L +
Sbjct: 109 MRDSVFYNAMITAYSHNHDGHAAIELFCDMQR------DNFRP--DNYTFTSVLGALALV 160
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG---------FLKDSSKLFDELPE 131
QLH + K G V AL++ YV + ++ KLFDE+P
Sbjct: 161 AEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPN 220
Query: 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNRS 181
R+ ++W +ITG VK +L+ A+ + V+W ++ GY +
Sbjct: 221 RDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKM 280
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIR--VSNCLIDTYAK 238
+ + E T +V+ G R + +H Y K N A D+ V+N LI Y K
Sbjct: 281 IMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWK 340
Query: 239 CGCIFSALKLFEDI-----------------------------SVERKNLVSWTSIISGF 269
CG + A ++F + + KN++SW +ISG
Sbjct: 341 CGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGL 400
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS------HG-GLH-----YG----- 312
A G + A++ F RM+ G +P F + +CS HG LH YG
Sbjct: 401 AQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSL 460
Query: 313 ----CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN----VEMGERVT 364
L+ M R G ++ A + + +P D + ++ A HG +E+ E +
Sbjct: 461 SAGNALITMYARCGVVDAAHCLFINMPC--VDAISWNAMIAALGQHGQGTQAIELFEEML 518
Query: 365 RKVLEMER 372
++ + +R
Sbjct: 519 KEGILPDR 526
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 162/399 (40%), Gaps = 88/399 (22%)
Query: 71 YSFLIRTCV---TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
Y L++ C +SY +L +HA + GFQ ++ L+++Y L + LFD
Sbjct: 14 YGSLLQICCLQSPISY-SLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFD 72
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAS 185
E+P+ ++V +I G+L+ +R +F + P R+ V + ++ Y+ N A+
Sbjct: 73 EIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSH-NHDGHAA 131
Query: 186 TE-----------PSEITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLI 233
E P T +VL A+ ++CQ +H K G F V N LI
Sbjct: 132 IELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSG-TGFVTSVLNALI 190
Query: 234 DTYAKC---------GCIFSALKLFEDI-----------------------------SVE 255
+Y KC + A KLF+++
Sbjct: 191 SSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTS 250
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG------- 308
+K V+W ++ISG+A G+ A E F +M ++ + TF SV++ C++ G
Sbjct: 251 KKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKE 310
Query: 309 LHY------------------GCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
+H L+ + G+++ A++I +P D+V I+L
Sbjct: 311 MHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPER--DLVSWNIIL-- 366
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389
S + NV + EM N +++M + LA +G
Sbjct: 367 -SGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIG 404
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 191/371 (51%), Gaps = 47/371 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D FT L+ C L + G ++H + + G + ++ +L+++Y+ + +F
Sbjct: 501 DRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIF 560
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D++ ++LV WNVMITG + E+PC + ++ +L G
Sbjct: 561 DKMENKSLVCWNVMITGFSQ-----------NELPCEALDTFRQMLSG----------GI 599
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+P EI + VL A Q A+R + +H + K + D V+ LID YAKCGC+ +
Sbjct: 600 KPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSE-DAFVTCALIDMYAKCGCMEQSQ 658
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+ V K+ W II+G+ +HG G A+E FE MQ G +P+ TFL VL AC+H
Sbjct: 659 NIFD--RVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNH 716
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HY C+VDMLGRAG+L +A K+ +P E D +
Sbjct: 717 AGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE-PDSGIW 775
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404
LL +C +G++E+GE V++K+LE+E +YVL+ N+ AG+G++ + ++R+ M E
Sbjct: 776 SSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKEN 835
Query: 405 NALKFPGRSLV 415
K G S +
Sbjct: 836 GLHKDAGCSWI 846
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 29/281 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L+N LL YS + A L+ +L S + L P D+FT + + C ++
Sbjct: 160 FLYNALLSGYSRNALFRDAISLFLELL-----SATDLAP--DNFTLPCVAKACAGVADVE 212
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
LG +HA+ K G S +V AL+ MY GF++ + K+F+ + RNLV+WN ++
Sbjct: 213 LGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACS 272
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ G +F+ R+ S P T++ V+PA G
Sbjct: 273 ENGGFGECCGVFK------------------RLLISEEEGLVPDVATMVTVIPACAAVGE 314
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
VR ++HG K G ++ V+N L+D Y+KCG + A LF D++ KN+VSW +I
Sbjct: 315 VRMGMVVHGLAFKLGITE-EVTVNNSLVDMYSKCGYLGEARALF-DMN-GGKNVVSWNTI 371
Query: 266 ISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNACS 305
I G++ G + E + MQ+ ++ N VT L+VL ACS
Sbjct: 372 IWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 23/239 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T +I C + +G +H + K+G V VN +LV+MY G+L ++ LF
Sbjct: 298 DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF 357
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
D +N+V+WN +I G K G+ L +EM V R+N
Sbjct: 358 DMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKV----------RVN------- 400
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
E+T+L VLPA + + + IHGY + GF D V+N + YAKC + A
Sbjct: 401 ---EVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLK-DELVANAFVAAYAKCSSLDCAE 456
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
++F +E K + SW ++I A +G +++ F M G+ P+R T S+L AC+
Sbjct: 457 RVF--CGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACA 513
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 164/388 (42%), Gaps = 53/388 (13%)
Query: 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLH-FYSLADSPKKAFLLYKQLQQIYTHSHSPLR 63
NN + +SL HT + +L ++L DS L L +++H+ +
Sbjct: 30 NNSNNLFPPFTVPKSSLTSHTKTHSPILQRLHNLCDSGN----LNDALNLLHSHAQNGTV 85
Query: 64 PLFD--SFTYSFLIRTCVTLSYPNLGTQLHAVISKV-GFQSHVYVNTALVNMYVSLGFLK 120
D L+R C ++G ++HA++S ++ V ++T ++ MY + G
Sbjct: 86 SSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPS 145
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
DS +FD E++L +N +++G + A SLF E+ +S T +
Sbjct: 146 DSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLEL-----LSATDL--------- 191
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P T+ V A V + +H K G + D V N LI Y KCG
Sbjct: 192 ------APDNFTLPCVAKACAGVADVELGEAVHALALKAGGFS-DAFVGNALIAMYGKCG 244
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM---QKVGLKPNRVTF 297
+ SA+K+FE ++ +NLVSW S++ + +G F+R+ ++ GL P+ T
Sbjct: 245 FVESAVKVFE--TMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATM 302
Query: 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357
++V+ AC+ G R G + LGI E+T + C + G
Sbjct: 303 VTVIPACAAVGEV---------RMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGE- 352
Query: 358 EMGERVTRKVLEMERGNGGDYVLMYNIL 385
R + +M NGG V+ +N +
Sbjct: 353 ------ARALFDM---NGGKNVVSWNTI 371
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 186/374 (49%), Gaps = 40/374 (10%)
Query: 77 TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVT 136
+C P G +HA I G + V+V+T L+ +Y G + + ++FD +P ++ +
Sbjct: 127 SCTARRSP--GRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPTKSTIA 184
Query: 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------------ 184
WN M+ V+ ++E A LF MP R+VVSW ++ GY + R A
Sbjct: 185 WNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSS 244
Query: 185 -STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
+ P+ T+ VL A G + +H Y +K N + + CLID YAKCG I
Sbjct: 245 CTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMND-NGTLDRCLIDMYAKCGSID 303
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
AL++FE +R +L SWT++I G AMHG + F MQ G+ P+ VTF+ VLNA
Sbjct: 304 KALQVFEKAPGKR-DLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNA 362
Query: 304 CSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341
C+HGGL HYGC++D+LGR GRL +A ++ +P + ++
Sbjct: 363 CAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRMIQTMPMK-PNM 421
Query: 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401
V+ L AC H +VE+GE +V ++ + V+M ++ A + R RR M
Sbjct: 422 VIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPWARVMMSSMYAKAQDWSGLARERREM 481
Query: 402 DERNALKFPGRSLV 415
+ K PG S V
Sbjct: 482 NSLQMKKTPGCSSV 495
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 131/296 (44%), Gaps = 60/296 (20%)
Query: 90 LHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWG 148
+H ++ K G + ++ TAL++ Y +LG + LFDE+P ++LV M G
Sbjct: 32 IHCLLFKAGLLHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSG 91
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS--------NGAST-----EPSEITILA 195
+ A LF++M I DG+ N + +GA + P +
Sbjct: 92 QAAQALDLFQDM----------IADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAF 141
Query: 196 VLPAIWQNGAVRNCQLIHGYGE-------KRGFNAFDIRVS---NCLIDTYAKCGCIFSA 245
++ + + +LI YGE +R F++ + + N ++ Y + I +A
Sbjct: 142 IVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAA 201
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM---QKVGLKPNRVTFLSVLN 302
+LF +++ R+++VSW ++I+G+ + G K A+ F +M + PN T +VL+
Sbjct: 202 YRLF--LAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLS 259
Query: 303 ACSHGG-LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSE 337
AC+ G L G CL+DM + G +++A ++ P +
Sbjct: 260 ACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGK 315
>gi|242087927|ref|XP_002439796.1| hypothetical protein SORBIDRAFT_09g020210 [Sorghum bicolor]
gi|241945081|gb|EES18226.1| hypothetical protein SORBIDRAFT_09g020210 [Sorghum bicolor]
Length = 399
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 203/409 (49%), Gaps = 54/409 (13%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
FN+LL + + P +A ++ + +RP D FT ++R+C L
Sbjct: 12 FNSLLASLARSGRPAQALCTFRDMLA------RGVRP--DQFTLPPVLRSCTLTGDAGLA 63
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ HA++ K+G Q +++V +ALV Y L L D+ +LFD + ER+ V W M++ +
Sbjct: 64 STSHALVVKLGAQENLFVASALVLCYAGLSNLPDARRLFDGMRERDAVLWTSMLSAYAQG 123
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE + A F M A E + ++++L A Q G R
Sbjct: 124 GEPDAALRFFGSM---------------------VAAGMELDAVVMVSLLLACGQLGWRR 162
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + +H +R F + + N L+D Y KCG A ++F + R++++SW+++I
Sbjct: 163 HGRSVHACCVRR-FLGMPLSLGNALVDMYVKCGDFAFAERVFA--GMPRRDVISWSALIL 219
Query: 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------------ 309
G ++G A+ F+RM+ G++PN VTFL L+AC+H G+
Sbjct: 220 GHGLNGHSDVALRFFDRMEAEGIRPNSVTFLGALSACAHSGMVDKAYAILKGMKLWGIEP 279
Query: 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HY C+ D LGRAG + +A K+ +P E + ++ + L AC HG +E E V+++
Sbjct: 280 ELKHYSCMADTLGRAGHVVEAVKLIEEMPFEPDEAILGGV-LAACRVHGEMESAEWVSKR 338
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++M G G Y+ + NI + GRY DAER+R +M E K PG S V
Sbjct: 339 LMDMSPGKSGYYMSLANIYSDAGRYSDAERIRGLMKEVKVNKLPGHSSV 387
>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
Length = 524
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/465 (30%), Positives = 229/465 (49%), Gaps = 59/465 (12%)
Query: 2 PSSNNVTTR-IHSHLLTTNSLL-HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSH 59
PS + R + HLL +++LL L N LL L P A L+ +L++I
Sbjct: 16 PSLSAAQLRQVDGHLLRSSTLLLADRFLPNQLLRSL-LPAHPLGALRLFPRLRRIIPD-- 72
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPN-------LGTQ-----LHAVISKVGFQSHVYVNT 107
RP +++T+SFL++ S P G+ LHA+ + + +H YV
Sbjct: 73 --FRP--NNYTFSFLLKAAADSSAPPYLEPESPFGSHAIVPCLHALAVVLAWDAHAYVAN 128
Query: 108 ALVNMYVSLGFLKDSSKLFD-ELPER--NLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
L++ Y + G L + +LF + R ++ +W ++T K G ++ AR+LF+ MP RN
Sbjct: 129 GLIHAYATHGVLPAARRLFGGAVASRAADVCSWTSLLTACAKAGHVDEARALFDGMPRRN 188
Query: 165 VVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHG 214
V+W+ +L Y A P+ ++ VL A GA+ + +H
Sbjct: 189 DVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCVRPNRAAVVGVLTACGALGALDQGRWVHA 248
Query: 215 Y--GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
G A D V+ L+D YAKCG + +A ++F ++++ ++T++ISG + H
Sbjct: 249 LLVGGGGHGVAMDGVVATALVDMYAKCGSLETARQVFAAAPRGQRDVFAYTAMISGLSDH 308
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------H 310
G A++ F +M G++PN VTF+ VL AC GL H
Sbjct: 309 GRCGEAIDLFGQMLVEGVRPNEVTFICVLTACGRAGLVGRAKEVFRSMGAVHGMEPGVEH 368
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
YGCLVD+LGRAG+L A + +P D V LL AC+ HG+VE GE+V R + E+
Sbjct: 369 YGCLVDVLGRAGQLADALEAVRSMPMR-PDSYVLGALLNACAAHGDVEAGEQVVRWLAEL 427
Query: 371 ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ G +V + N+ AG G++ + ++RR M+ER K PG S++
Sbjct: 428 GLDHSGVHVQLSNMYAGWGKWEEVLKVRRDMEERRVAKVPGCSML 472
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/416 (31%), Positives = 203/416 (48%), Gaps = 46/416 (11%)
Query: 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
L + + + +++ Y + A LL+K + T DS ++ C +
Sbjct: 2078 LRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 2137
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
S + +H + K GF + V L++ Y G S K+FD + E++ ++WN MI
Sbjct: 2138 SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMI 2197
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
+ G A +F M V G+ R N +T+ AVL A
Sbjct: 2198 AVYAQSGLSGEALEVFHGM-----VRHVGV--------RYNA-------VTLSAVLLACA 2237
Query: 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
GA+R + IH K +++ V +ID Y KCG + A K F+ ++ KN+ S
Sbjct: 2238 HAGALRAGKCIHDQVIKMDLE-YNVCVGTSIIDMYCKCGRVEMAKKTFD--RMKEKNVKS 2294
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------------ 309
WT++++G+ MHG K A++ F +M + G+KPN +TF+SVL ACSH GL
Sbjct: 2295 WTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK 2354
Query: 310 ----------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEM 359
HYGC+VD+ GRAG L +A + + + D VV LLGAC H NV++
Sbjct: 2355 HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMK-PDFVVWGSLLGACRIHKNVDL 2413
Query: 360 GERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
GE +K+ E++ N G YVL+ N+ A GR+ D ER+R +M R +K PG SLV
Sbjct: 2414 GEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLV 2469
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 194/375 (51%), Gaps = 63/375 (16%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHTLL------------FNTLLHFYSLADSPKKAFLLYKQ 50
S++ + TR HL +T+ + + +L +N ++ ++ ++A +LYK
Sbjct: 56 SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKN 115
Query: 51 L--QQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
+ Q I D FT+ F+I+ C +LG +H + K GF V+V
Sbjct: 116 MVCQGIAA----------DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L++ Y G + + K+F+++ RN+V+W +I+GL+ G+L+ AR +F+E+P +NVVSW
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225
Query: 169 TGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218
T +++GY R R + P+E T+++++ A + G + + IH Y K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285
Query: 219 RGFNAFDIRV--SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
N +I V LID Y+KCG I A+++FE ++ RK+L +W S+I+ +HG+G+
Sbjct: 286 ---NCIEIGVYLGTALIDMYSKCGSIKDAIEVFE--TMPRKSLPTWNSMITSLGVHGLGQ 340
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNAC-----------------SHGGL-----HYGCL 314
A+ F M++V +KP+ +TF+ VL AC H G+ HY C+
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECM 400
Query: 315 VDMLGRAGRLEQAEK 329
++ R+ L++A K
Sbjct: 401 TELYARSNNLDEAFK 415
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 144/282 (51%), Gaps = 38/282 (13%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++ I++C L G H GF++ ++V++AL++MY G LKD+ LFDE+
Sbjct: 2017 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 2076
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
P RN+V+W MITG V+ + + A LF++ L+ T + N +
Sbjct: 2077 PLRNVVSWTSMITGYVQNEQADNALLLFKDF-----------LEEETEVEDGNNVPLD-- 2123
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ +++VL A + + +HG+ K+GF+ I V N L+D YAKCG + K+F
Sbjct: 2124 SVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG-SIGVGNTLMDAYAKCGQPLVSKKVF 2182
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRVTFLSVLNACSHGG 308
+ +E K+ +SW S+I+ +A G+ A+E F M + VG++ N VT +VL AC+H G
Sbjct: 2183 D--WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 2240
Query: 309 ----------------LHYGC-----LVDMLGRAGRLEQAEK 329
L Y ++DM + GR+E A+K
Sbjct: 2241 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 2282
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 145/352 (41%), Gaps = 80/352 (22%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER 132
FL++ C + Q+HA I + G + + L+++Y + G + + LF ++
Sbjct: 32 FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192
TWN++I G E A L++ M C+ + + + T
Sbjct: 89 CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA---------------------DKFT 127
Query: 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252
V+ A ++ +++HG K GF+ D+ V N LID Y KCG ALK+FE +
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSG-DVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Query: 253 SVER-----------------------------KNLVSWTSIISGFAMHGMGKAAVENFE 283
V KN+VSWT++I+G+ + + A+E F+
Sbjct: 187 RVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFK 246
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL--------HYG-------------CLVDMLGRAG 322
RMQ + PN T +S++ AC+ G+ Y L+DM + G
Sbjct: 247 RMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCG 306
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
++ A ++ +P + + ++ + HG +G+ EMER N
Sbjct: 307 SIKDAIEVFETMPRK--SLPTWNSMITSLGVHG---LGQEALNLFSEMERVN 353
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGC 313
V++ N+ SW S+I+ A G A+ F ++K+GL P R +F + +CS
Sbjct: 1975 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCS-------A 2027
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE 358
L D++ +GR+ + G TD+ V L+ S G ++
Sbjct: 2028 LCDLV--SGRMSHQQAFVFGFE---TDLFVSSALIDMYSKCGQLK 2067
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 200/413 (48%), Gaps = 54/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T FNT++ Y + + A LY ++ + S D+FTY L + C +L
Sbjct: 50 TFEFNTMIRGYVNVMNMENALFLYYEMLERGVES--------DNFTYPALFKACASLRSI 101
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H I K G + ++V +L+NMY G ++ S +F+ + R++ +W+ +I
Sbjct: 102 EEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAH 161
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G S+F EM S S P E +++VL A G
Sbjct: 162 ASLGMWSECLSVFGEM--------------------SREGSCRPEESILVSVLSACTHLG 201
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ + H R ++ V LID Y KCGCI L LF+ + +KN +S++
Sbjct: 202 ALDLGRCTH-VTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMV--KKNQLSYSV 258
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+I+G AMHG G A++ F M + GLKP+ V +L VL+AC+H GL
Sbjct: 259 MITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEH 318
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGC+V ++GRAG L +A + +P + +VV R LL AC FH N+E+GE
Sbjct: 319 GIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRG-LLSACKFHHNLEIGEI 377
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + E+ N GDYV++ N+ A R+ D ++R M + + PG SLV
Sbjct: 378 AAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLV 430
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-MNRSNG---------ASTEP 188
V L WG ++YA S+F ++ + ++ GY MN N E
Sbjct: 24 VATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVES 83
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
T A+ A ++ IHGY KRG D+ V N LI+ Y KCG I + +
Sbjct: 84 DNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEG-DLFVQNSLINMYGKCGKIELSCSV 142
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHG 307
FE + +R+++ SW++II+ A GM + F M + G +P +SVL+AC+H
Sbjct: 143 FEHM--DRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHL 200
Query: 308 G 308
G
Sbjct: 201 G 201
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 38/384 (9%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKL 125
D Y +C QLHA +K G SH V LV+ Y G L + ++
Sbjct: 74 DPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCRLVHAYAVCGMLPHARRV 133
Query: 126 FDELPERNLVTWNVMITGLVK-WGELEYARSLFEEMPCRNVVSWTGIL---------DGY 175
FD + ++V WN ++ G + G+ + R F MP R+ VSW +L D
Sbjct: 134 FDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTVLSWCVVNGEYDEA 193
Query: 176 TRMNRSNGASTE--PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233
+ R AS E P +T+++V+ AI GA+ + H Y ++ + ++S+ LI
Sbjct: 194 IAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEV-EEKLSSALI 252
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ Y+KCG I A+ +F+++ +R +L +W ++++GF +G + A+E F RM+ L PN
Sbjct: 253 NMYSKCGFIEGAVYVFDNVGGKR-SLDTWNAMLAGFTANGYSERALELFTRMESTRLMPN 311
Query: 294 RVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIA 331
++TF +VLNACSHGGL HYGC+VD+ RAG E+AE+I
Sbjct: 312 KITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEII 371
Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391
+P E D + + LLGAC H N+E+G++V +++E + YVL+ NI A G +
Sbjct: 372 QTMPME-PDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLLSNIYALDGNW 430
Query: 392 VDAERLRRVMDERNALKFPGRSLV 415
++R++M +R LK PG S V
Sbjct: 431 GGVHKVRKLMLDRGVLKTPGSSSV 454
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,399,560,610
Number of Sequences: 23463169
Number of extensions: 263529761
Number of successful extensions: 675764
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6459
Number of HSP's successfully gapped in prelim test: 3279
Number of HSP's that attempted gapping in prelim test: 555306
Number of HSP's gapped (non-prelim): 40132
length of query: 415
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 270
effective length of database: 8,957,035,862
effective search space: 2418399682740
effective search space used: 2418399682740
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)