BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039757
         (415 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
           B. Subtilis (Apo Form)
 pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
           B. Subtilis (Apo Form)
 pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
           B. Subtilis (Complex With Nadp And Tcl)
 pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
           B. Subtilis (Complex With Nadp And Tcl)
 pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
           B. Subtilis (Complex With Nadp And Tcl)
 pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
           B. Subtilis (Complex With Nadp And Tcl)
          Length = 258

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 20/120 (16%)

Query: 233 IDTYAKCGCIFSALKLFEDISVERKN----LVSWTSI-----ISGFAMHGMGKAAVENFE 283
           I+  A   C   A KL E      KN    +VS +S+     +  +   G+ KAA+E   
Sbjct: 112 INAKALLFCAQEAAKLME------KNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALT 165

Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA-EKIALGIPSEITDVV 342
           R   V L P ++    ++NA S G +    L     R   LE A +    G   EI D+V
Sbjct: 166 RYLAVELSPKQI----IVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMV 221


>pdb|1KY8|A Chain A, Crystal Structure Of The Non-Phosphorylating
           Glyceraldehyde-3- Phosphate Dehydrogenase
          Length = 501

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTR----KVLEMERGNGGDYVLMYN 383
           L +P +  + +V    + A SF G+ E+GERV +    K   ME G G   +++ +
Sbjct: 220 LNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKVGGVKQYVMELGGGDPAIVLED 275


>pdb|1UXN|A Chain A, Structural Basis For Allosteric Regulation And Substrate
           Specificity Of The Non-Phosphorylating
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
           Thermoproteus Tenax
 pdb|1UXP|A Chain A, Structural Basis For Allosteric Regulation And Substrate
           Specificity Of The Non-Phosphorylating
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
           Thermoproteus Tenax
 pdb|1UXQ|A Chain A, Structural Basis For Allosteric Regulation And Substrate
           Specificity Of The Non-Phosphorylating
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
           Thermoproteus Tenax
 pdb|1UXR|A Chain A, Structural Basis For Allosteric Regulation And Substrate
           Specificity Of The Non-Phosphorylating
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
           Thermoproteus Tenax
 pdb|1UXT|A Chain A, Structural Basis For Allosteric Regulation And Substrate
           Specificity Of The Non-phosphorylating
           Glyceraldehyde-3-phosphate Dehydrogenase (gapn) From
           Thermoproteus Tenax
 pdb|1UXU|A Chain A, Structural Basis For Allosteric Regulation And Substrate
           Specificity Of The Non-Phosphorylating
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
           Thermoproteus Tenax
          Length = 501

 Score = 28.1 bits (61), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTR----KVLEMERGNGGDYVLMYN 383
           L +P +  + +V    + A SF G+ E+GERV +    K   ME G G   +++ +
Sbjct: 220 LNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKVGGVKQYVMELGGGDPAIVLED 275


>pdb|1UXV|A Chain A, Structural Basis For Allosteric Regulation And Substrate
           Specificity Of The Non-Phosphorylating
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
           Thermoproteus Tenax
          Length = 501

 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTR----KVLEMERGNGGDYVLMYN 383
           L +P +  + +V    + A SF G+ E+GERV +    K   ME G G   +++ +
Sbjct: 220 LNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKVGGVKQYVMELGGGDPAIVLED 275


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,448,759
Number of Sequences: 62578
Number of extensions: 463196
Number of successful extensions: 901
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 12
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)