BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039757
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 293/457 (64%), Gaps = 45/457 (9%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHT-------LLFNTLLHFYSLADSPKKAFLLYKQLQQI- 54
S+ + ++HSH T+ LL H LFN LL YSL ++P A+ LY QLQ++
Sbjct: 48 SNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYDQLQRLH 107
Query: 55 YTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS--KVGFQSHVYVNTALVNM 112
+ H+ P FDSFTY FL++ +P+L + K+GF+SHVYV TALV M
Sbjct: 108 FLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFESHVYVQTALVGM 167
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y+ G + D+ K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT I+
Sbjct: 168 YLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTII 227
Query: 173 DGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
DGY R+++ A + +P+EITILA+LPA+W G ++ C +H Y KRGF
Sbjct: 228 DGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGF 287
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
DIRV+N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGK AV
Sbjct: 288 VPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSM 347
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDML 318
F+ M+++GLKPNRVT +SVLNACSHGGL HYGCLVDML
Sbjct: 348 FKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDML 407
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
R GRLE+AEKIAL IP E VV R+LLGACS + + E+ ERVTRK++E+ER +GGDY
Sbjct: 408 RRKGRLEEAEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDY 466
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLM NI G GR++DA+R R+ MD R K PG S V
Sbjct: 467 VLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 265 bits (676), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 238/424 (56%), Gaps = 43/424 (10%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T L NT++ SL D P + ++++ P D+FT+ F+++ V +S
Sbjct: 77 NTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKP-----DTFTFPFVLKIAVRVSD 131
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G Q+H + GF S V+V T L+ MY S G L D+ K+FDE+ +++ WN ++ G
Sbjct: 132 VWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAG 191
Query: 144 LVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGA----------STEPSEI 191
K GE++ ARSL E MPC RN VSWT ++ GY + R++ A + EP E+
Sbjct: 192 YGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEV 251
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+LAVL A G++ + I Y + RG N + ++N +ID YAK G I AL +FE
Sbjct: 252 TLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMYAKSGNITKALDVFE- 309
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
V +N+V+WT+II+G A HG G A+ F RM K G++PN VTF+++L+ACSH G
Sbjct: 310 -CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVD 368
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC++D+LGRAG+L +A+++ +P + + + LL
Sbjct: 369 LGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK-ANAAIWGSLLA 427
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
A + H ++E+GER +++++E N G+Y+L+ N+ + +GR+ ++ +R +M K
Sbjct: 428 ASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKM 487
Query: 410 PGRS 413
G S
Sbjct: 488 AGES 491
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-------------TEPSEITIL 194
G L YA S+F PC N ++ + ++ N S +P T
Sbjct: 61 GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFP 120
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
VL + V + IHG GF++ + V LI Y CG + A K+F+++ V
Sbjct: 121 FVLKIAVRVSDVWFGRQIHGQVVVFGFDS-SVHVVTGLIQMYFSCGGLGDARKMFDEMLV 179
Query: 255 ER-------------------------------KNLVSWTSIISGFAMHGMGKAAVENFE 283
+ +N VSWT +ISG+A G A+E F+
Sbjct: 180 KDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQ 239
Query: 284 RMQKVGLKPNRVTFLSVLNACSH-GGLHYG 312
RM ++P+ VT L+VL+AC+ G L G
Sbjct: 240 RMLMENVEPDEVTLLAVLSACADLGSLELG 269
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 239/427 (55%), Gaps = 49/427 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVT 80
+ L+N+++ Y+ +YKQL LR F D FT+ F+ ++C +
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQL----------LRKSFELPDRFTFPFMFKSCAS 121
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L LG Q+H + K G + HV AL++MY+ L D+ K+FDE+ ER++++WN +
Sbjct: 122 LGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSL 181
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSE 190
++G + G+++ A+ LF M + +VSWT ++ GYT + A EP E
Sbjct: 182 LSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDE 241
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
I++++VLP+ Q G++ + IH Y E+RGF V N LI+ Y+KCG I A++LF
Sbjct: 242 ISLISVLPSCAQLGSLELGKWIHLYAERRGFLK-QTGVCNALIEMYSKCGVISQAIQLFG 300
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+E K+++SW+++ISG+A HG A+E F MQ+ +KPN +TFL +L+ACSH G+
Sbjct: 301 --QMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMW 358
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGCL+D+L RAG+LE+A +I +P + D + LL
Sbjct: 359 QEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK-PDSKIWGSLL 417
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
+C GN+++ ++E+E + G+YVL+ NI A +G++ D RLR+++ N K
Sbjct: 418 SSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK 477
Query: 409 FPGRSLV 415
PG SL+
Sbjct: 478 TPGGSLI 484
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 77/334 (23%)
Query: 140 MITGLV----KWGELEYARSLFEEMPCRNVVSWTGILDGYT---------RMNRS--NGA 184
M+T +V K +++YA LF ++ NV + I+ YT R+ + +
Sbjct: 44 MVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKS 103
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
P T + + G+ + +HG+ K G F + N LID Y K +
Sbjct: 104 FELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVD 162
Query: 245 ALKLFEDISVER------------------------------KNLVSWTSIISGFAMHGM 274
A K+F+++ ER K +VSWT++ISG+ G
Sbjct: 163 AHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGC 221
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------C 313
A++ F MQ G++P+ ++ +SVL +C+ G L G
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNA 281
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
L++M + G + QA I L E DV+ ++ ++HGN EM+R
Sbjct: 282 LIEMYSKCGVISQA--IQLFGQMEGKDVISWSTMISGYAYHGN---AHGAIETFNEMQRA 336
Query: 374 ----NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
NG ++ + + + VG + + R +M +
Sbjct: 337 KVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 258 bits (658), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 239/423 (56%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N ++ +S +D P+++ LLY+++ S +P +++T+ L++ C LS
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRM----LCSSAP----HNAYTFPSLLKACSNLSAF 131
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
TQ+HA I+K+G+++ VY +L+N Y G K + LFD +PE + V+WN +I G
Sbjct: 132 EETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGY 191
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--MNRS--------NGASTEPSEITIL 194
VK G+++ A +LF +M +N +SWT ++ GY + MN+ + EP +++
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLA 251
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A Q GA+ + IH Y K D + LID YAKCG + AL++F++I
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIR-MDSVLGCVLIDMYAKCGEMEEALEVFKNI-- 308
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++K++ +WT++ISG+A HG G+ A+ F MQK+G+KPN +TF +VL ACS+ GL
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG L++A++ +P + + V+ LL AC
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK-PNAVIWGALLKACR 427
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H N+E+GE + ++ ++ +GG YV NI A ++ A RR+M E+ K PG
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487
Query: 413 SLV 415
S +
Sbjct: 488 STI 490
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 52/323 (16%)
Query: 89 QLHAVISKVGFQSHVYVNTALVNMYVSL---GFLKDSSKLFDELPERNLVTWNVMITGLV 145
Q+HA + K G Y T ++ +S FL + +FD + WN+MI G
Sbjct: 32 QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91
Query: 146 KWGELEYARSLFEEMPC----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
E E + L++ M C N ++ +L + ++ + ++IT L +
Sbjct: 92 CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLG-----Y 146
Query: 202 QNGAVRNCQLIHGYGEKRGFN----AFDIRVS-------NCLIDTYAKCGCIFSALKLFE 250
+N LI+ Y F FD R+ N +I Y K G + AL LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFD-RIPEPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-- 308
++ KN +SWT++ISG+ M K A++ F MQ ++P+ V+ + L+AC+ G
Sbjct: 206 KMA--EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGAL 263
Query: 309 -----LH-------------YGC-LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
+H GC L+DM + G +E+A ++ I + V L+
Sbjct: 264 EQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKK--SVQAWTALIS 321
Query: 350 ACSFHGNVEMGERVTRKVLEMER 372
++HG+ G K +EM++
Sbjct: 322 GYAYHGH---GREAISKFMEMQK 341
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 240/457 (52%), Gaps = 79/457 (17%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVTL 81
+FNTL+ YS +D P + ++ ++ +R F DSF+++F+I+
Sbjct: 70 AFMFNTLVRGYSESDEPHNSVAVFVEM----------MRKGFVFPDSFSFAFVIKAVENF 119
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV------ 135
G Q+H K G +SH++V T L+ MY G ++ + K+FDE+ + NLV
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179
Query: 136 -------------------------TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+WNVM+ G +K GELE A+ +F EMP R+ VSW+
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 171 ILDGYTRMNRSNG----------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ G N A P+E+++ VL A Q+G+ +++HG+ EK G
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ ++ + V+N LID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+ AV
Sbjct: 300 Y-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVR 357
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
F M G+ P+ ++F+S+L+ACSH GL HYGC+VD+
Sbjct: 358 LFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLY 417
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR+G+L++A +P T +V R LLGACS HGN+E+ E+V +++ E++ N GD
Sbjct: 418 GRSGKLQKAYDFICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDL 476
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VL+ N A G++ D +R+ M + K SLV
Sbjct: 477 VLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLV 513
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 29/217 (13%)
Query: 75 IRTCVTL--SYPNLG--TQLHAVISKVGFQSHVYVNTALV-NMYVSLG-FLKDSSKLFDE 128
I C++L S NL TQ+H + K G + Y L+ + +S+ L + +L
Sbjct: 5 IHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLC 64
Query: 129 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
PE + +N ++ G + E + ++F EM + V P
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVF--------------------P 104
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ V+ A+ ++R +H K G + + V LI Y CGC+ A K+
Sbjct: 105 DSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLES-HLFVGTTLIGMYGGCGCVEFARKV 163
Query: 249 FEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
F+++ + NLV+W ++I+ A E F++M
Sbjct: 164 FDEM--HQPNLVAWNAVITACFRGNDVAGAREIFDKM 198
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 236/437 (54%), Gaps = 61/437 (13%)
Query: 28 FNTLLHFYSLADSPKKAF---LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+NT++ +S +D K L Y+ + + P R FT+ +++ C
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVE---PNR-----FTFPSVLKACAKTGKI 144
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERNLVT------- 136
G Q+H + K GF +V + LV MYV GF+KD+ LF + E+++V
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 137 ------WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNR 180
WNVMI G ++ G+ + AR LF++M R+VVSW ++ GY+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P+ +T+++VLPAI + G++ + +H Y E G D+ + + LID Y+KCG
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCG 323
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
I A+ +FE + R+N+++W+++I+GFA+HG A++ F +M++ G++P+ V ++++
Sbjct: 324 IIEKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381
Query: 301 LNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
L ACSHGGL HYGC+VD+LGR+G L++AE+ L +P +
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
DV+ + LLGAC GNVEMG+RV +++M + G YV + N+ A G + + +R
Sbjct: 442 DDVIW-KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMR 500
Query: 399 RVMDERNALKFPGRSLV 415
M E++ K PG SL+
Sbjct: 501 LRMKEKDIRKDPGCSLI 517
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 116/285 (40%), Gaps = 80/285 (28%)
Query: 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG-------------ASTEPSEITILA 195
+L+YA +F +MP RN SW I+ G++ + EP+ T +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
VL A + G ++ + IHG K GF + +SN L+ Y CG + A LF +E
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSN-LVRMYVMCGFMKDARVLFYKNIIE 192
Query: 256 R-------------------------------------------KNLVSWTSIISGFAMH 272
+ +++VSW ++ISG++++
Sbjct: 193 KDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLN 252
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG------------------- 312
G K AVE F M+K ++PN VT +SVL A S G L G
Sbjct: 253 GFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG 312
Query: 313 -CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
L+DM + G +E+A + +P E +V+ ++ + HG
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRE--NVITWSAMINGFAIHGQ 355
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 233/443 (52%), Gaps = 55/443 (12%)
Query: 12 HSHLLTTNSLLHHTL-----LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
H + + +L H T+ LF ++ S+ +AFLLY QL S + P
Sbjct: 77 HGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS------SEINP-- 128
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+S L+++C T S G +H + K G YV T LV++Y G + + K+F
Sbjct: 129 NEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVF 184
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D +PER+LV+ MIT K G +E AR+LF+ M R++VSW ++DGY + N A
Sbjct: 185 DRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALM 244
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+P EIT++A L A Q GA+ + IH + + +++V LID
Sbjct: 245 LFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIR-LNVKVCTGLIDM 303
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNR 294
Y+KCG + A+ +F D RK++V+W ++I+G+AMHG + A+ F MQ + GL+P
Sbjct: 304 YSKCGSLEEAVLVFND--TPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+ L AC+H GL HYGCLV +LGRAG+L++A +
Sbjct: 362 ITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIK 421
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+ + D V+ +LG+C HG+ +G+ + ++ + N G YVL+ NI A VG Y
Sbjct: 422 NMNMD-ADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
++R +M E+ +K PG S +
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTI 503
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 224/423 (52%), Gaps = 46/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N L+ Y + P ++ +LY L S LRP T++F+ + S
Sbjct: 47 TFLYNKLIQAYYVHHQPHESIVLYNLL------SFDGLRP--SHHTFNFIFAASASFSSA 98
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LH+ + GF+S + T L+ Y LG L + ++FDE+ +R++ WN MITG
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 158
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITI 193
+ G+++ A LF+ MP +NV SWT ++ G+++ + A S +P+ IT+
Sbjct: 159 QRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITV 218
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDI 252
++VLPA G + + + GY + GF FD I V N I+ Y+KCG I A +LFE++
Sbjct: 219 VSVLPACANLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+R NL SW S+I A HG A+ F +M + G KP+ VTF+ +L AC HGG+
Sbjct: 277 GNQR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVK 335
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC++D+LGR G+L++A + +P + D VV LLGA
Sbjct: 336 GQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGTLLGA 394
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
CSFHGNVE+ E + + ++E N G+ V+M NI A ++ R+R++M + K
Sbjct: 395 CSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAA 454
Query: 411 GRS 413
G S
Sbjct: 455 GYS 457
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 221/420 (52%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L++ Y +KA +YK ++ ++P D T L+ +C L N G
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLMES------EGVKP--DDVTMIGLVSSCSMLGDLNRG 276
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + + + G + + + AL++M+ G + ++ ++FD L +R +V+W MI+G +
Sbjct: 277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARC 336
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G L+ +R LF++M ++VV W ++ G + R A +T+P EIT++ L
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCL 396
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ IH Y EK + ++ + L+D YAKCG I AL +F I + +
Sbjct: 397 SACSQLGALDVGIWIHRYIEKYSL-SLNVALGTSLVDMYAKCGNISEALSVFHGI--QTR 453
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N +++T+II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+
Sbjct: 454 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 513
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY +VD+LGRAG LE+A+++ +P E D V LL C HG
Sbjct: 514 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME-ADAAVWGALLFGCRMHG 572
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NVE+GE+ +K+LE++ + G YVL+ + + DA+R RR+M+ER K PG S +
Sbjct: 573 NVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 177/382 (46%), Gaps = 83/382 (21%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N + +S +++PK++FLLYKQ+ + H RP D FTY L + C L +LG
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLR---HGCCESRP--DHFTYPVLFKVCADLRLSSLG 175
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + K+ + +V+ A ++M+ S G ++++ K+FDE P R+LV+WN +I G K
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207
GE E A +++ M V +P ++T++ ++ + G +
Sbjct: 236 GEAEKAIYVYKLMESEGV---------------------KPDDVTMIGLVSSCSMLGDLN 274
Query: 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267
+ + Y ++ G I + N L+D ++KCG I A ++F+++ E++ +VSWT++IS
Sbjct: 275 RGKEFYEYVKENGLR-MTIPLVNALMDMFSKCGDIHEARRIFDNL--EKRTIVSWTTMIS 331
Query: 268 GFAMHGM-------------------------------GKAAVENFERMQKVGLKPNRVT 296
G+A G+ G+ A+ F+ MQ KP+ +T
Sbjct: 332 GYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEIT 391
Query: 297 FLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALGIP 335
+ L+ACS G L G LVDM + G + +A + GI
Sbjct: 392 MIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGI- 450
Query: 336 SEITDVVVRRILLGACSFHGNV 357
+ + + ++G + HG+
Sbjct: 451 -QTRNSLTYTAIIGGLALHGDA 471
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 224/422 (53%), Gaps = 44/422 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+FN L+ +S P KAF Y Q+ + S + P D+ T+ FLI+ +
Sbjct: 83 FVFNLLIRCFSTGAEPSKAFGFYTQMLK------SRIWP--DNITFPFLIKASSEMECVL 134
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G Q H+ I + GFQ+ VYV +LV+MY + GF+ + ++F ++ R++V+W M+ G
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
K G +E AR +F+EMP RN+ +W+ +++GY + N A +E +++
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ + GA+ + + Y K ++ + L+D + +CG I A+ +FE +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTV-NLILGTALVDMFWRCGDIEKAIHVFEGLP-- 311
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
+ +SW+SII G A+HG A+ F +M +G P VTF +VL+ACSHGGL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VDMLGRAG+L +AE L + + + + LLGAC
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVK-PNAPILGALLGACKI 430
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ N E+ ERV +++++ + G YVL+ NI A G++ E LR +M E+ K PG S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490
Query: 414 LV 415
L+
Sbjct: 491 LI 492
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 228/415 (54%), Gaps = 55/415 (13%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++NTL+ Y+ + AF LY++++ + P D+ TY FLI+ T++
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMR-----VSGLVEP--DTHTYPFLIKAVTTMAD 136
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
LG +H+V+ + GF S +YV +L+++Y + G + + K+FD++PE++LV WN +I G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
+ G+ E A +L+ EM N +P TI+++L A +
Sbjct: 197 FAENGKPEEALALYTEM---------------------NSKGIKPDGFTIVSLLSACAKI 235
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
GA+ + +H Y K G ++ SN L+D YA+CG + A LF+++ KN VSWT
Sbjct: 236 GALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--DKNSVSWT 292
Query: 264 SIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGL------------- 309
S+I G A++G GK A+E F+ M+ GL P +TF+ +L ACSH G+
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352
Query: 310 ---------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360
H+GC+VD+L RAG++++A + +P + +VV+ R LLGAC+ HG+ ++
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLA 411
Query: 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E ++L++E + GDYVL+ N+ A R+ D +++R+ M K PG SLV
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 213/389 (54%), Gaps = 41/389 (10%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDS 122
P + F Y ++++ LS +H + K GF +V V TAL++ Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----- 177
+LFDE+ ERN+V+W M++G + G++ A +LFE+MP R+V SW IL T+
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 178 ------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
N S P+E+T++ VL A Q G ++ + IH + +R ++ D+ VSN
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNS 300
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-- 289
L+D Y KCG + A +F+ S +K+L +W S+I+ FA+HG + A+ FE M K+
Sbjct: 301 LVDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 290 -LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+KP+ +TF+ +LNAC+HGGL HYGCL+D+LGRAGR ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A ++ + + D + LL AC HG++++ E + ++ + NGG +M N+
Sbjct: 419 ALEVMSTMKMK-ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYG 477
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
+G + +A R R+++ +NA K PG S +
Sbjct: 478 EMGNWEEARRARKMIKHQNAYKPPGWSRI 506
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 230/449 (51%), Gaps = 51/449 (11%)
Query: 1 SPSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
S S+++ R+ SH+ N L+FN ++ YSL P ++ + ++
Sbjct: 48 SLSNSDYANRVFSHIQNPN-----VLVFNAMIKCYSLVGPPLESLSFFSSMKS------- 95
Query: 61 PLRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119
R ++ D +TY+ L+++C +LS G +H + + GF + +V +Y S G +
Sbjct: 96 --RGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRM 153
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
D+ K+FDE+ ERN+V WN+MI G G++E LF++M R++VSW ++ ++
Sbjct: 154 GDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCG 213
Query: 180 RSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
R A +P E T++ VLP G + + IH E G I V
Sbjct: 214 RDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVG 273
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N L+D Y K G + +A +F + +R+N+VSW ++ISG A++G G+ ++ F+ M + G
Sbjct: 274 NALVDFYCKSGDLEAATAIFRKM--QRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEG 331
Query: 290 -LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
+ PN TFL VL CS+ G HYG +VD++ R+GR+ +
Sbjct: 332 KVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITE 391
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A K +P + + LL AC HG+V++ E +++++E GN G+YVL+ N+ A
Sbjct: 392 AFKFLKNMPVN-ANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNLYA 450
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
GR+ D E++R +M + K G+S +
Sbjct: 451 EEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 221 bits (563), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 227/441 (51%), Gaps = 47/441 (10%)
Query: 12 HSHLLTTNSLLHHT-----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
H +L N +L + N+++ + + P+K+F Y+++ S + L+P
Sbjct: 53 HKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRI----LSSGNDLKP-- 106
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D++T +FL++ C L G Q+H + + GF + +V T L+++Y LG L K+F
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
+ +P + V M+T + G++ +AR LFE MP R+ ++W ++ GY ++ S A
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ + + +++VL A Q GA+ + H Y E+ +R++ L+D Y
Sbjct: 227 VFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIK-ITVRLATTLVDLY 285
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCG + A+++F +E KN+ +W+S ++G AM+G G+ +E F M++ G+ PN VT
Sbjct: 286 AKCGDMEKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
F+SVL CS G HYGCLVD+ RAGRLE A I +
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + V LL A + N+E+G ++K+LE+E N G YVL+ NI A + +
Sbjct: 404 PMK-PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNV 462
Query: 395 ERLRRVMDERNALKFPGRSLV 415
+R+ M + K PG S++
Sbjct: 463 SHVRQSMKSKGVRKQPGCSVM 483
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 243/506 (48%), Gaps = 125/506 (24%)
Query: 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPL 65
N+ R+ + + N +H L N+L+ ++ P +AF ++ ++Q+ +
Sbjct: 68 NLAVRVFNQVQEPN--VH---LCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFA------- 115
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY------------ 113
D+FTY FL++ C S+ + +H I K+G S +YV AL++ Y
Sbjct: 116 -DNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAM 174
Query: 114 ---------------------VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
V G L+D+ +LFDE+P+R+L++WN M+ G + E+
Sbjct: 175 KLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSK 234
Query: 153 ARSLFEEMPCRNVVSWTGILDGYTR-----MNR------------------------SNG 183
A LFE+MP RN VSW+ ++ GY++ M R G
Sbjct: 235 AFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKG 294
Query: 184 ASTEPSEI--------------TILAVLPAIWQNGAVRNCQLIHGYGEKR--GFNAFDIR 227
E + ++++L A ++G + IH ++ G NA+
Sbjct: 295 LLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAY--- 351
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
V N L+D YAKCG + A +F DI +K+LVSW +++ G +HG GK A+E F RM++
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIP--KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR 409
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
G++P++VTF++VL +C+H GL HYGCLVD+LGR GRL+
Sbjct: 410 EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLK 469
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+A K+ +P E +VV+ LLGAC H V++ + V +++++ + G+Y L+ NI
Sbjct: 470 EAIKVVQTMPME-PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNI- 527
Query: 386 AGVGRYVDAERLRRVMDERNALKFPG 411
Y AE V D R+ +K G
Sbjct: 528 -----YAAAEDWEGVADIRSKMKSMG 548
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 17/186 (9%)
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
D+ ++ LI + C A+++F V+ N+ S+I A + A F
Sbjct: 50 DLHIAPKLISALSLCRQTNLAVRVFN--QVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSE 107
Query: 285 MQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
MQ+ GL + T+ +L ACS G + +V M+ EK+ L +D+ V
Sbjct: 108 MQRFGLFADNFTYPFLLKACS--GQSWLPVVKMMH-----NHIEKLGLS-----SDIYVP 155
Query: 345 RILLGACSFHGNVEMGERVTRKVLE-MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ S G +G R K+ E M + + M L G DA RL M +
Sbjct: 156 NALIDCYSRCGG--LGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213
Query: 404 RNALKF 409
R+ + +
Sbjct: 214 RDLISW 219
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 224/454 (49%), Gaps = 79/454 (17%)
Query: 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGT 88
N +L + + P+K LY ++++ SP D +T++F+++ C L + + G
Sbjct: 81 NHVLRGSAQSMKPEKTVSLYTEMEK---RGVSP-----DRYTFTFVLKACSKLEWRSNGF 132
Query: 89 QLHAVISKVGFQSHVYVNTALV-------------------------------NMYVSLG 117
H + + GF + YV AL+ + Y G
Sbjct: 133 AFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRG 192
Query: 118 FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177
+ ++ +LFDE+P ++ V WNVMITG +K E++ AR LF+ ++VV+W ++ GY
Sbjct: 193 KIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVN 252
Query: 178 ----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
A P +TIL++L A G + + +H Y + + I
Sbjct: 253 CGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIY 312
Query: 228 VS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283
V N LID YAKCG I A+++F V+ ++L +W ++I G A+H + ++E FE
Sbjct: 313 VGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDLSTWNTLIVGLALH-HAEGSIEMFE 369
Query: 284 RMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRA 321
MQ++ + PN VTF+ V+ ACSH G HYGC+VDMLGRA
Sbjct: 370 EMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRA 429
Query: 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381
G+LE+A + E + +V R LLGAC +GNVE+G+ K+L M + GDYVL+
Sbjct: 430 GQLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLL 488
Query: 382 YNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NI A G++ +++R++ D+ K G SL+
Sbjct: 489 SNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 156/353 (44%), Gaps = 85/353 (24%)
Query: 89 QLHAVISKVGFQSHVYVNTALV-NMYVSL-GFLKDSSKLFDELPERNLVTWNVMITGLVK 146
Q+HA + G S++ V L+ + +S+ G LK + KLFDE+P+ ++ N ++ G +
Sbjct: 30 QIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQ 89
Query: 147 WGELEYARSLFEEMPCRNV----VSWTGILDGYTRMN-RSNGASTEPSEITILAVLPAIW 201
+ E SL+ EM R V ++T +L +++ RSNG + + VL
Sbjct: 90 SMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYV 149
Query: 202 QNGAV---RNC----------------------QLIHGYGEK-------RGFN------- 222
+N + NC + GY ++ R F+
Sbjct: 150 KNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQ 209
Query: 223 -AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
A+++ ++ CL KC + SA +LF+ + K++V+W ++ISG+ G K A+
Sbjct: 210 VAWNVMITGCL-----KCKEMDSARELFDRFT--EKDVVTWNAMISGYVNCGYPKEALGI 262
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGG-------LH-------------------YGCLV 315
F+ M+ G P+ VT LS+L+AC+ G LH + L+
Sbjct: 263 FKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH---GNVEMGERVTR 365
DM + G +++A ++ G+ D+ L+ + H G++EM E + R
Sbjct: 323 DMYAKCGSIDRAIEVFRGVKDR--DLSTWNTLIVGLALHHAEGSIEMFEEMQR 373
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 222/420 (52%), Gaps = 42/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ +S + +P+K+ +Y Q+ + L P D TY FL+++ LS LG
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRF------GLLP--DHMTYPFLMKSSSRLSNRKLG 127
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
LH + K G + +++ L++MY S + KLFDE+P +NLVTWN ++ K
Sbjct: 128 GSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKS 187
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILAV 196
G++ AR +F+EM R+VV+W+ ++DGY + N A S++ +E+T+++V
Sbjct: 188 GDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSV 247
Query: 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
+ A GA+ + +H Y + + LID YAKCG I A +F SV+
Sbjct: 248 ICACAHLGALNRGKTVHRYILDVHL-PLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKE 306
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
+ + W +II G A HG + +++ F +M++ + P+ +TFL +L ACSHGGL
Sbjct: 307 TDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHF 366
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD+L RAG ++ A +P + T ++ +L G C HG
Sbjct: 367 FKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNG-CINHG 425
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N+E+ E V +K++E++ N G YV + N+ A ++ A +R M+++ K G S++
Sbjct: 426 NLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSIL 485
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 143/492 (29%), Positives = 236/492 (47%), Gaps = 104/492 (21%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQI--------------Y 55
+ H+ +L T L H T + L+ F + PK + L +I Y
Sbjct: 57 QAHAFMLKTG-LFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAY 115
Query: 56 THSHSP-----------LRPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103
+S +P L P+F D ++++F+++ C G Q+H + K G + V
Sbjct: 116 ANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDV 175
Query: 104 YVNTALVNMY-------------------------------VSLGFLKDSSKLFDELPER 132
+V LVN+Y + G + ++ LFDE+ ER
Sbjct: 176 FVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEER 235
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM----------NRSN 182
N+ +WN MI+G G ++ A+ +F+ MP R+VVSW ++ Y + N+
Sbjct: 236 NVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKML 295
Query: 183 GASTE-PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
STE P T+++VL A G++ + +H Y +K G + ++ L+D Y+KCG
Sbjct: 296 DDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIE-IEGFLATALVDMYSKCGK 354
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I AL++F S ++++ +W SIIS ++HG+GK A+E F M G KPN +TF+ VL
Sbjct: 355 IDKALEVFRATS--KRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVL 412
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+AC+H G+ HYGC+VD+LGR G++E+AE++ IP++
Sbjct: 413 SACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEA 472
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY-------- 391
+++ LLGAC G +E ER+ ++LE+ + Y M N+ A GR+
Sbjct: 473 SILLES-LLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRR 531
Query: 392 -VDAERLRRVMD 402
+ AER+ R +D
Sbjct: 532 NMRAERVNRSLD 543
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 218 bits (555), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 217/451 (48%), Gaps = 74/451 (16%)
Query: 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQLQQIYTHSH 59
+H+H+L + H ++ NTLL+ Y+ S P++ F+ + L Y+
Sbjct: 82 VHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHD 140
Query: 60 SPLRPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
P L + FT S +I+ G QLH K GF S+V+V +
Sbjct: 141 RPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGS 200
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
AL+++Y G + D+ +FD L RN V+WN +I G + E A LF+ M
Sbjct: 201 ALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM------- 253
Query: 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN--AFD 225
+ DG+ PS + ++ A G + + +H Y K G AF
Sbjct: 254 ---LRDGF-----------RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF- 298
Query: 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
N L+D YAK G I A K+F+ ++ ++++VSW S+++ +A HG GK AV FE M
Sbjct: 299 --AGNTLLDMYAKSGSIHDARKIFDRLA--KRDVVSWNSLLTAYAQHGFGKEAVWWFEEM 354
Query: 286 QKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDMLGRAGRL 324
++VG++PN ++FLSVL ACSH GL HY +VD+LGRAG L
Sbjct: 355 RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDL 414
Query: 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384
+A + +P E T + + LL AC H N E+G V E++ + G +V++YNI
Sbjct: 415 NRALRFIEEMPIEPT-AAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473
Query: 385 LAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A GR+ DA R+R+ M E K P S V
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWV 504
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 56/330 (16%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D Y+ L++ C G +HA I + F+ + + L+NMY G L+++ K+F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD-GYTRMNRSNGAS 185
+++P+R+ VTW +I+G + + PC ++ + +L GY+
Sbjct: 119 EKMPQRDFVTWTTLISGYSQ-----------HDRPCDALLFFNQMLRFGYS--------- 158
Query: 186 TEPSEITILAVLPAIWQNGAVRNC--QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243
P+E T+ +V+ A R C +HG+ K GF++ ++ V + L+D Y + G +
Sbjct: 159 --PNEFTLSSVIKA--AAAERRGCCGHQLHGFCVKCGFDS-NVHVGSALLDLYTRYGLMD 213
Query: 244 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303
A +F+ ++E +N VSW ++I+G A + A+E F+ M + G +P+ ++ S+ A
Sbjct: 214 DAQLVFD--ALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGA 271
Query: 304 CSHGG-LHYG--------------------CLVDMLGRAGRLEQAEKIALGIPSEITDVV 342
CS G L G L+DM ++G + A KI + DVV
Sbjct: 272 CSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR--DVV 329
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMER 372
LL A + HG G+ EM R
Sbjct: 330 SWNSLLTAYAQHG---FGKEAVWWFEEMRR 356
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 218 bits (554), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/426 (31%), Positives = 219/426 (51%), Gaps = 57/426 (13%)
Query: 25 TLLFNTLLHFYSLAD----SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80
T FNT++ +L + S K+ F+ ++ S P D T+ F+ + C
Sbjct: 79 TFCFNTIIRICTLHEPSSLSSKRFFV------EMRRRSVPP-----DFHTFPFVFKACAA 127
Query: 81 LSYPNLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
+L LH + G S ++ L+ +Y + + + +LFDE P+R++VT+N
Sbjct: 128 KKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYN 187
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEP 188
V+I GLVK E+ AR LF+ MP R++VSW ++ GY +MN A +P
Sbjct: 188 VLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKP 247
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGE-KRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247
+ I++ L A Q+G + + IH Y + KR F D ++ L+D YAKCG I +A++
Sbjct: 248 DNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLF--IDSFLATGLVDFYAKCGFIDTAME 305
Query: 248 LFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307
+FE S K L +W ++I+G AMHG G+ V+ F +M G+KP+ VTF+SVL CSH
Sbjct: 306 IFELCS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHS 363
Query: 308 GL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVV 342
GL HYGC+ D+LGRAG +E+A ++ +P + ++
Sbjct: 364 GLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLL 423
Query: 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402
LLG C HGN+E+ E+ +V + +GG Y +M + A R+ + ++R ++D
Sbjct: 424 AWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIID 483
Query: 403 ERNALK 408
+K
Sbjct: 484 RDKKVK 489
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 199/364 (54%), Gaps = 38/364 (10%)
Query: 86 LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LG LH K+G ++HV V TA++ MY G K + +FD + ++N VTWN MI G
Sbjct: 91 LGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGY 150
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITIL 194
++ G+++ A +F++MP R+++SWT +++G+ + A +P + I+
Sbjct: 151 MRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAII 210
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
A L A GA+ +H Y + F ++RVSN LID Y +CGC+ A ++F ++
Sbjct: 211 AALNACTNLGALSFGLWVHRYVLSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFYNM-- 267
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ VTF L ACSH GL
Sbjct: 268 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGL 327
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGCLVD+ RAGRLE A K+ +P + +VV+ LL ACS
Sbjct: 328 RYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGS-LLAACS 386
Query: 353 FHG-NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
HG N+ + ER+ + + ++ + +YV++ N+ A G++ A ++RR M K PG
Sbjct: 387 NHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPG 446
Query: 412 RSLV 415
S +
Sbjct: 447 FSSI 450
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
VSWTS I+ +G A + F M G++PN +TF+++L+ C
Sbjct: 37 VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC 81
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 205/380 (53%), Gaps = 36/380 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
S T ++ C + +L ++H +S+ + + + ALVN Y + G + + ++F
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---MNRS--- 181
+ R++++W ++ G V+ G L+ AR+ F++MP R+ +SWT ++DGY R N S
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 182 ----NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
A P E T+++VL A G++ + I Y +K D+ V N LID Y
Sbjct: 356 FREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNALIDMYF 414
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
KCGC A K+F D+ ++++ +WT+++ G A +G G+ A++ F +MQ + ++P+ +T+
Sbjct: 415 KCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITY 472
Query: 298 LSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335
L VL+AC+H G+ HYGC+VDMLGRAG +++A +I +P
Sbjct: 473 LGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMP 532
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395
+ +V LLGA H + M E +K+LE+E NG Y L+ NI AG R+ D
Sbjct: 533 MN-PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLR 591
Query: 396 RLRRVMDERNALKFPGRSLV 415
+RR + + K PG SL+
Sbjct: 592 EVRRKIVDVAIKKTPGFSLI 611
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 138/318 (43%), Gaps = 79/318 (24%)
Query: 67 DSFTYSFLI----RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
DS T+ FL+ R L+ G +LH + K G S++YV ALV MY G + +
Sbjct: 133 DSHTFPFLLNGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
+FD + ++ +WN+MI+G + E E + L EM RN+VS
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME-RNLVS--------------- 233
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
P+ +T+L VL A + C+ +H Y + +R+ N L++ YA CG +
Sbjct: 234 -----PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGEM 287
Query: 243 FSALKLFEDIS--------------VERKNL---------------VSWTSIISGFAMHG 273
A+++F + VER NL +SWT +I G+ G
Sbjct: 288 DIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-------------------- 312
++E F MQ G+ P+ T +SVL AC+H G L G
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 313 CLVDMLGRAGRLEQAEKI 330
L+DM + G E+A+K+
Sbjct: 408 ALIDMYFKCGCSEKAQKV 425
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G + YA LF ++P +VV W ++ G+++++ P T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 198 PAIWQNGAVRNC-QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
+ ++G C + +H + K G + ++ V N L+ Y+ CG + A +F+ +
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMARGVFDRRC--K 198
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
+++ SW +ISG+ + ++E M++ + P VT L VL+ACS
Sbjct: 199 EDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 234/486 (48%), Gaps = 107/486 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+ L N+++ Y +F LY+ L++ + P D+FT++ L ++C
Sbjct: 42 SFLSNSMIKAYLETRQYPDSFALYRDLRK-----ETCFAP--DNFTFTTLTKSCSLSMCV 94
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW------- 137
G QLH+ I + GF + +YV+T +V+MY G + + FDE+P R+ V+W
Sbjct: 95 YQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGY 154
Query: 138 -------------------------NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
N M+ G VK G++ AR LF+EM + V++WT ++
Sbjct: 155 IRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMI 214
Query: 173 DGYTRMNRSNGA------------------------------------------STEPSE 190
GY + + A S +P +
Sbjct: 215 HGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDD 274
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+TIL+VLPAI GA+ + H + +++ + ++V ++D Y+KCG I A ++F+
Sbjct: 275 VTILSVLPAISDTGALSLGEWCHCFVQRKKLDK-KVKVCTAILDMYSKCGEIEKAKRIFD 333
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ K + SW ++I G+A++G +AA++ F M + KP+ +T L+V+ AC+HGGL
Sbjct: 334 EMP--EKQVASWNAMIHGYALNGNARAALDLFVTMM-IEEKPDEITMLAVITACNHGGLV 390
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC+VD+LGRAG L++AE + +P E +++ L
Sbjct: 391 EEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSS-FLS 449
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
AC + ++E ER+ +K +E+E N G+YVL+ N+ A R+ D ++ VM + A K
Sbjct: 450 ACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKE 509
Query: 410 PGRSLV 415
G SL+
Sbjct: 510 VGCSLI 515
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 215/412 (52%), Gaps = 55/412 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
++FN++ YS +P + F L+ ++ + + P D++T+ L++ C
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILE------DGILP--DNYTFPSLLKACAVAKALE 146
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G QLH + K+G +VYV L+NMY + + +FD + E +V +N MITG
Sbjct: 147 EGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYA 206
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA 205
+ A SLF EM G +P+EIT+L+VL + G+
Sbjct: 207 RRNRPNEALSLFREM---------------------QGKYLKPNEITLLSVLSSCALLGS 245
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+ + IH Y +K F + ++V+ LID +AKCG + A+ +FE + K+ +W+++
Sbjct: 246 LDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSIFE--KMRYKDTQAWSAM 302
Query: 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG----------------- 308
I +A HG + ++ FERM+ ++P+ +TFL +LNACSH G
Sbjct: 303 IVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFG 362
Query: 309 -----LHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363
HYG +VD+L RAG LE A + +P T ++ RILL ACS H N+++ E+V
Sbjct: 363 IVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTP-MLWRILLAACSSHNNLDLAEKV 421
Query: 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++ E++ +GGDYV++ N+ A ++ + LR+VM +R A+K PG S +
Sbjct: 422 SERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSI 473
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 34/212 (16%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST----------EPSEITILAVLPA 199
+ YAR LFE M ++V + + GY+R + P T ++L A
Sbjct: 79 MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
A+ + +H K G + ++ V LI+ Y +C + SA +F+ I VE +
Sbjct: 139 CAVAKALEEGRQLHCLSMKLGLDD-NVYVCPTLINMYTECEDVDSARCVFDRI-VE-PCV 195
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS-------------H 306
V + ++I+G+A A+ F MQ LKPN +T LSVL++C+ +
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 307 GGLHYGC--------LVDMLGRAGRLEQAEKI 330
H C L+DM + G L+ A I
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSI 287
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 208/395 (52%), Gaps = 54/395 (13%)
Query: 63 RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 122
R D + L C L Q H V K+G + V V AL++MY G + +
Sbjct: 106 RVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEV 165
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182
++F+EL E+++V+W V++ +VKW LE R +F EMP RN V+WT ++ GY
Sbjct: 166 KRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYL----GA 221
Query: 183 GASTEPSE---------------ITILAVLPAIWQNGAVRNCQLIHGY--------GEKR 219
G + E E +T+ ++L A Q+G + + +H Y GE+
Sbjct: 222 GFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEA 281
Query: 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279
++ D+ V L+D YAKCG I S++ +F + ++N+V+W ++ SG AMHG G+ +
Sbjct: 282 SYD--DVMVGTALVDMYAKCGNIDSSMNVFR--LMRKRNVVTWNALFSGLAMHGKGRMVI 337
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------HYGCLVDML 318
+ F +M + +KP+ +TF +VL+ACSH G+ HY C+VD+L
Sbjct: 338 DMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLL 396
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GRAG +E+AE + +P +VV+ LLG+CS HG VE+ ER+ R++++M GN
Sbjct: 397 GRAGLIEEAEILMREMPVPPNEVVLGS-LLGSCSVHGKVEIAERIKRELIQMSPGNTEYQ 455
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+LM N+ GR A+ LR + +R K PG S
Sbjct: 456 ILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLS 490
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 56/270 (20%)
Query: 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQS--HVYVNTALVNMYVSLGFLKDSSKLFDELP 130
L+R C S+ G +LHAV++ G + Y++ AL Y S G + + KLFDE+P
Sbjct: 11 LLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIP 70
Query: 131 --ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188
E++ V W +++ ++G L + LF EM + V E
Sbjct: 71 LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRV---------------------EI 109
Query: 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+++++ + + + Q HG K G ++V N L+D Y KCG + ++
Sbjct: 110 DDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLT-SVKVCNALMDMYGKCGLVSEVKRI 168
Query: 249 FEDIS-------------------VER----------KNLVSWTSIISGFAMHGMGKAAV 279
FE++ +ER +N V+WT +++G+ G + +
Sbjct: 169 FEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVL 228
Query: 280 ENFERMQ-KVGLKPNRVTFLSVLNACSHGG 308
E M + G N VT S+L+AC+ G
Sbjct: 229 ELLAEMVFRCGHGLNFVTLCSMLSACAQSG 258
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
+SN L YA G + +A KLF++I + K+ V WT+++S F+ +G+ +++ F M++
Sbjct: 45 LSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRR 104
Query: 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347
++ + V+ + + C+ L G +Q +A+ + +T V V L
Sbjct: 105 KRVEIDDVSVVCLFGVCAK-----------LEDLGFAQQGHGVAVKM-GVLTSVKVCNAL 152
Query: 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV---MDER 404
+ +G + V R E+E + + + +L V ++ ER R V M ER
Sbjct: 153 M---DMYGKCGLVSEVKRIFEELEEKSVVSWTV---VLDTVVKWEGLERGREVFHEMPER 206
Query: 405 NALKF 409
NA+ +
Sbjct: 207 NAVAW 211
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 219/424 (51%), Gaps = 81/424 (19%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV----TLS 82
++N L +LA ++ LY ++ +I S D FTY+++++ CV T++
Sbjct: 145 VWNALFRALTLAGHGEEVLGLYWKMNRIGVES--------DRFTYTYVLKACVASECTVN 196
Query: 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
+ G ++HA +++ G+ SHVY+ T LV+MY
Sbjct: 197 HLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYA---------------------------- 228
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA------------STEPSE 190
++G ++YA +F MP RNVVSW+ ++ Y + ++ A + P+
Sbjct: 229 ---RFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
+T+++VL A A+ +LIHGY +RG ++ + V + L+ Y +CG + ++F+
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSI-LPVISALVTMYGRCGKLEVGQRVFD 344
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+ +++VSW S+IS + +HG GK A++ FE M G P VTF+SVL ACSH GL
Sbjct: 345 --RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HY C+VD+LGRA RL++A K+ + +E V LL
Sbjct: 403 EEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS-LL 461
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
G+C HGNVE+ ER +R++ +E N G+YVL+ +I A + + +R++++++ R K
Sbjct: 462 GSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQK 521
Query: 409 FPGR 412
PGR
Sbjct: 522 LPGR 525
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 169/422 (40%), Gaps = 105/422 (24%)
Query: 49 KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTA 108
KQ ++ + SP + TY LI C S + ++H I G ++ T
Sbjct: 63 KQAIRVLSQESSPSQQ-----TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATK 117
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
L+ MY LG + + K+FD+ +R + WN + L G E
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE----------------- 160
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQL----IHGYGEKRGFNAF 224
+L Y +MNR E T VL A + N + IH + +RG+++
Sbjct: 161 -EVLGLYWKMNR---IGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSH 216
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ + L+D YA+ GC+ A +F + V +N+VSW+++I+ +A +G A+ F
Sbjct: 217 -VYIMTTLVDMYARFGCVDYASYVFGGMPV--RNVVSWSAMIACYAKNGKAFEALRTFRE 273
Query: 285 MQK--VGLKPNRVTFLSVLNACS------HGGLHYG---------------CLVDMLGRA 321
M + PN VT +SVL AC+ G L +G LV M GR
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRC 333
Query: 322 GRLEQAEKI---------------------------ALGI----------PSEITDVVVR 344
G+LE +++ A+ I P+ +T V V
Sbjct: 334 GKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV- 392
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNG-----GDYVLMYNILAGVGRYVDAERLRR 399
LGACS G VE G+R+ M R +G Y M ++L R +A ++ +
Sbjct: 393 ---LGACSHEGLVEEGKRLFET---MWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 400 VM 401
M
Sbjct: 447 DM 448
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 223/437 (51%), Gaps = 57/437 (13%)
Query: 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSP 61
P N + R+ S L N L H NT++ +SL+ +P + F L++ L++ +S P
Sbjct: 59 PRDINYSCRVFSQRL--NPTLSHC---NTMIRAFSLSQTPCEGFRLFRSLRR---NSSLP 110
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
PL + SF ++ C+ G Q+H I GF S + T L+++Y + D
Sbjct: 111 ANPL----SSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTD 166
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+FDE+P+R+ V+WNV+ + ++ LF++M +N V DG +
Sbjct: 167 ACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKM--KNDV------DGCVK---- 214
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
P +T L L A GA+ + +H + ++ G + + +SN L+ Y++CG
Sbjct: 215 ------PDGVTCLLALQACANLGALDFGKQVHDFIDENGLSG-ALNLSNTLVSMYSRCGS 267
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
+ A ++F + +N+VSWT++ISG AM+G GK A+E F M K G+ P T +L
Sbjct: 268 MDKAYQVF--YGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLL 325
Query: 302 NACSHGGL-----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
+ACSH GL HYGC+VD+LGRA L++A + + +
Sbjct: 326 SACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMK- 384
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
D + R LLGAC HG+VE+GERV ++E++ GDYVL+ N + VG++ LR
Sbjct: 385 PDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELR 444
Query: 399 RVMDERNALKFPGRSLV 415
+M E+ PG S +
Sbjct: 445 SLMKEKRIHTKPGCSAI 461
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 211 bits (538), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 220/424 (51%), Gaps = 51/424 (12%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQ-QIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
+N++++ + SP KA L+K+++ + SH T ++ C +
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASH---------VTMVGVLSACAKIRNLEF 250
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
G Q+ + I + ++ + A+++MY G ++D+ +LFD + E++ VTW M+ G
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITILA 195
+ E AR + MP +++V+W ++ Y + + N A + + ++IT+++
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
L A Q GA+ + IH Y +K G + V++ LI Y+KCG + + ++F SVE
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIR-MNFHVTSALIHMYSKCGDLEKSREVFN--SVE 427
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
++++ W+++I G AMHG G AV+ F +MQ+ +KPN VTF +V ACSH GL
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 487
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKI--ALGIPSEITDVVVRRILLGAC 351
HY C+VD+LGR+G LE+A K A+ IP + V LLGAC
Sbjct: 488 LFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS---VWGALLGAC 544
Query: 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
H N+ + E ++LE+E N G +VL+ NI A +G++ + LR+ M K PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 412 RSLV 415
S +
Sbjct: 605 CSSI 608
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 189/434 (43%), Gaps = 89/434 (20%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
++ +NTL+ Y A P ++ L + S S P + +T+ FLI+ +S
Sbjct: 94 NSFAWNTLIRAY--ASGPDPVLSIWAFLDMV---SESQCYP--NKYTFPFLIKAAAEVSS 146
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
+LG LH + K S V+V +L++ Y S G L + K+F + E+++V+WN MI G
Sbjct: 147 LSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 206
Query: 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203
V+ G + A LF++M +V + S +T++ VL A
Sbjct: 207 FVQKGSPDKALELFKKMESEDV---------------------KASHVTMVGVLSAC--- 242
Query: 204 GAVRNCQL---IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI-------- 252
+RN + + Y E+ N ++ ++N ++D Y KCG I A +LF+ +
Sbjct: 243 AKIRNLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 253 ---------------------SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ-KVGL 290
S+ +K++V+W ++IS + +G A+ F +Q + +
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 291 KPNRVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEK 329
K N++T +S L+AC+ G L G L+ M + G LE++ +
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421
Query: 330 IALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-RGNGGDYVLMYNILAGV 388
+ + E DV V ++G + HG + K+ E + NG + ++ +
Sbjct: 422 VFNSV--EKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479
Query: 389 GRYVDAERLRRVMD 402
G +AE L M+
Sbjct: 480 GLVDEAESLFHQME 493
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 35/222 (15%)
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR-----------MNRSNGASTEPS 189
+ L + LEYAR +F+E+P N +W ++ Y ++ + + P+
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249
+ T ++ A + ++ Q +HG K + D+ V+N LI Y CG + SA K+F
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS-DVFVANSLIHCYFSCGDLDSACKVF 189
Query: 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GG 308
+++ K++VSW S+I+GF G A+E F++M+ +K + VT + VL+AC+
Sbjct: 190 --TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 309 LHYG--------------------CLVDMLGRAGRLEQAEKI 330
L +G ++DM + G +E A+++
Sbjct: 248 LEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 289
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 206/389 (52%), Gaps = 42/389 (10%)
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
H+ + P D++ + +++ C + ++HA + K+GF S V ++ +Y G
Sbjct: 120 HNSVLP--DNYVITSVLKACDL----KVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGE 173
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L ++ K+FDE+P+R+ V VMI + G ++ A LF+++ ++ V WT ++DG R
Sbjct: 174 LVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 179 NRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
N A + +E T + VL A GA+ + +H + E + + V
Sbjct: 234 KEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF-V 292
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N LI+ Y++CG I A ++F + K+++S+ ++ISG AMHG A+ F M
Sbjct: 293 GNALINMYSRCGDINEARRVFR--VMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNR 350
Query: 289 GLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQ 326
G +PN+VT +++LNACSHGGL HYGC+VD+LGR GRLE+
Sbjct: 351 GFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEE 410
Query: 327 AEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386
A + IP E D ++ LL AC HGN+E+GE++ +++ E E + G YVL+ N+ A
Sbjct: 411 AYRFIENIPIE-PDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYA 469
Query: 387 GVGRYVDAERLRRVMDERNALKFPGRSLV 415
G++ ++ +R M + K PG S +
Sbjct: 470 SSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 61/263 (23%)
Query: 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP------AIWQN 203
++YA +F + NV +T ++DG+ RS + + +VLP ++ +
Sbjct: 77 VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKA 136
Query: 204 GAVRNCQLIH------GYGEKR--GFNAFDIR----------------------VSNCLI 233
++ C+ IH G+G R G +I + +I
Sbjct: 137 CDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMI 196
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
+ Y++CG I AL+LF+D+ + K+ V WT++I G + A+E F MQ + N
Sbjct: 197 NCYSECGFIKEALELFQDVKI--KDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSAN 254
Query: 294 RVTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIAL 332
T + VL+ACS G L G L++M R G + +A ++
Sbjct: 255 EFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFR 314
Query: 333 GIPSEITDVVVRRILLGACSFHG 355
+ + DV+ ++ + HG
Sbjct: 315 VMRDK--DVISYNTMISGLAMHG 335
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 208 bits (529), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 39/342 (11%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167
++++ YV G ++D+ LFD +P R++VTW MI G K G + +A++LF++MP R+VV+
Sbjct: 257 SMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVA 316
Query: 168 WTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
+ ++ GY + N+ + + E P + T++ VLPAI Q G + +H Y
Sbjct: 317 YNSMMAGYVQ-NKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 375
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
++ F ++ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G
Sbjct: 376 IVEKQF-YLGGKLGVALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLG 432
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A + +++++ LKP+ +TF+ VLNACSH GL HYGC
Sbjct: 433 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 492
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
+VD+L R+G +E A+ + +P E D V+ R L ACS H E GE V + ++
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGY 551
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
N YVL+ N+ A G + D R+R +M ER K PG S +
Sbjct: 552 NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 161/337 (47%), Gaps = 43/337 (12%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D F+ S +++ C L + G Q+H + K G S +++ L+ +Y+ G L S ++F
Sbjct: 120 DKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMF 179
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNRSNGA 184
D +P+R+ V++N MI G VK G + AR LF+ MP +N++SW ++ GY + +
Sbjct: 180 DRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDI 239
Query: 185 ST-------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237
++ E I+ +++ ++G + + + + +R D+ +ID YA
Sbjct: 240 ASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMIDGYA 294
Query: 238 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNRVT 296
K G + A LF+ + +++V++ S+++G+ + A+E F M+K L P+ T
Sbjct: 295 KLGFVHHAKTLFDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTT 352
Query: 297 FLSVLNACSH---------------------GGLHYGCLVDMLGRAGRLEQAEKIALGIP 335
+ VL A + GG L+DM + G ++ A + GI
Sbjct: 353 LVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIE 412
Query: 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
++ D ++G + HG +GE +L++ER
Sbjct: 413 NKSID--HWNAMIGGLAIHG---LGESAFDMLLQIER 444
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/487 (29%), Positives = 220/487 (45%), Gaps = 108/487 (22%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL-RPLFDSFTYSFLIRTCVTLSY 83
T L+N L+ YS FL ++ + + + L RP D +T+ +++ C
Sbjct: 74 TYLWNHLIKGYS------NKFLFFETVSILMRMMRTGLARP--DEYTFPLVMKVCSNNGQ 125
Query: 84 PNLGTQLHAVISKVGFQSHVYVNT-------------------------------ALVNM 112
+G+ +H ++ ++GF V V T ALV
Sbjct: 126 VRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVA 185
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
YV G L+++ +FD +PERNL +WN ++ GLVK G+L A+ LF+EMP R+++S+T ++
Sbjct: 186 YVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMI 245
Query: 173 DGYTRMNR---------------------------SNGASTE--------------PSEI 191
DGY + NG E P E
Sbjct: 246 DGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEF 305
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR-VSNCLIDTYAKCGCIFSALKLFE 250
++ ++ A Q G C+ + Y +R N F V LID AKCG + A KLFE
Sbjct: 306 IMVGLMSACSQMGCFELCEKVDSYLHQR-MNKFSSHYVVPALIDMNAKCGHMDRAAKLFE 364
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
++ +++LVS+ S++ G A+HG G A+ FE+M G+ P+ V F +L C L
Sbjct: 365 EMP--QRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLV 422
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HY C+V++L R G+L++A ++ +P E LL
Sbjct: 423 EEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE-AHASAWGSLL 481
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
G CS HGN E+ E V R + E+E + G YVL+ NI A + R+ D LR M+E K
Sbjct: 482 GGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITK 541
Query: 409 FPGRSLV 415
GRS +
Sbjct: 542 ICGRSWI 548
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 44/232 (18%)
Query: 156 LFEEMPCRNVVSWTGILDGYT-------------RMNRSNGASTEPSEITILAVLPAIWQ 202
+FE +P W ++ GY+ RM R+ A P E T V+
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLA--RPDEYTFPLVMKVCSN 122
Query: 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262
NG VR +HG + GF+ D+ V +D Y KC +FSA K+F ++ +N VSW
Sbjct: 123 NGQVRVGSSVHGLVLRIGFDK-DVVVGTSFVDFYGKCKDLFSARKVFGEMP--ERNAVSW 179
Query: 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG 322
T+++ + G + A F+ M + L + LVD L ++G
Sbjct: 180 TALVVAYVKSGELEEAKSMFDLMPERNLGS------------------WNALVDGLVKSG 221
Query: 323 RLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT-RKVLEMERG 373
L A+K+ +P R I+ G + G+ V+ R + E RG
Sbjct: 222 DLVNAKKLFDEMPK-------RDIISYTSMIDGYAKGGDMVSARDLFEEARG 266
>sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing protein At1g03510
OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1
Length = 429
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 202/400 (50%), Gaps = 38/400 (9%)
Query: 48 YKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107
++Q ++ HS D+ +S +++C P LG +HA K F S+ +V
Sbjct: 28 HEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAHSVKSNFLSNPFVGC 87
Query: 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVV 166
AL++MY + + KLFDE+P+RN V WN MI+ G+++ A L+E M N
Sbjct: 88 ALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNES 147
Query: 167 SWTGILDGYTRMNRSNGASTE-----------PSEITILAVLPAIWQNGAVRNCQLIHGY 215
S+ I+ G + + E P+ IT+LA++ A GA R + IH Y
Sbjct: 148 SFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSACSAIGAFRLIKEIHSY 207
Query: 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
R ++ + L++ Y +CG I +F+ S+E +++V+W+S+IS +A+HG
Sbjct: 208 A-FRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFD--SMEDRDVVAWSSLISAYALHGDA 264
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGC 313
++A++ F+ M+ + P+ + FL+VL ACSH GL HY C
Sbjct: 265 ESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKDHYSC 324
Query: 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373
LVD+L R GR E+A K+ +P + T LLGAC +G +E+ E R++L +E
Sbjct: 325 LVDVLSRVGRFEEAYKVIQAMPEKPT-AKTWGALLGACRNYGEIELAEIAARELLMVEPE 383
Query: 374 NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
N +YVL+ I VGR +AERLR M E PG S
Sbjct: 384 NPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 198/382 (51%), Gaps = 37/382 (9%)
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SFT+S L++ C T+ NLG Q HA ++ VYV +++MYV + + K+FD
Sbjct: 149 SFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD 208
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR---------- 177
E+PER++++W +I + G +E A LFE +P +++V+WT ++ G+ +
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268
Query: 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTY 236
+R + E+T+ + A Q GA + +K G++ D + + + LID Y
Sbjct: 269 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 328
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERM-QKVGLKPNRV 295
+KCG + A+ +F +S+ KN+ +++S+I G A HG + A+ F M + +KPN V
Sbjct: 329 SKCGNVEEAVNVF--MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTV 386
Query: 296 TFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALG 333
TF+ L ACSH GL HY C+VD+LGR GRL++A ++
Sbjct: 387 TFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKT 446
Query: 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+ E V LLGAC H N E+ E + E+E G+Y+L+ N+ A G +
Sbjct: 447 MSVE-PHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGG 505
Query: 394 AERLRRVMDERNALKFPGRSLV 415
R+R+++ E+ K P S V
Sbjct: 506 VLRVRKLIKEKGLKKTPAVSWV 527
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 145/375 (38%), Gaps = 95/375 (25%)
Query: 78 CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTW 137
C+ L N Q+H + + G Y+ T L+ LG D
Sbjct: 59 CINL---NQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDP--------------- 100
Query: 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STE 187
YAR + E + RN WT ++ GY + + A
Sbjct: 101 --------------YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT 146
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEK----RGFNAFDIRVSNCLIDTYAKCGCIF 243
P T A+L A G +++ L + + RGF F + V N +ID Y KC I
Sbjct: 147 PVSFTFSALLKAC---GTMKDLNLGRQFHAQTFRLRGF-CF-VYVGNTMIDMYVKCESID 201
Query: 244 SALKLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGM 274
A K+F+++ S+ K++V+WT++++GFA +
Sbjct: 202 CARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAK 261
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334
+ A+E F+RM+K G++ + VT ++AC+ LG + ++A +IA
Sbjct: 262 PQEALEYFDRMEKSGIRADEVTVAGYISACAQ-----------LGASKYADRAVQIAQKS 310
Query: 335 PSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
+D VV+ L+ S GNVE V + M N Y M LA GR +
Sbjct: 311 GYSPSDHVVIGSALIDMYSKCGNVEEAVNV---FMSMNNKNVFTYSSMILGLATHGRAQE 367
Query: 394 AERLRRVMDERNALK 408
A L M + +K
Sbjct: 368 ALHLFHYMVTQTEIK 382
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 210/411 (51%), Gaps = 42/411 (10%)
Query: 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86
L+N ++ YS + K+A LL+ +++ L +S T + ++ CV +
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEE-------SAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146
+H + K G +V L++MY LG + + ++F ++ +R+LVTWN MITG V
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV 206
E A L +M +N+ + G +R+ S +P+ IT++ +LP+ A+
Sbjct: 484 SEHHEDALLLLHKM--QNLER--KVSKGASRV------SLKPNSITLMTILPSCAALSAL 533
Query: 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266
+ IH Y K A D+ V + L+D YAKCGC+ + K+F+ I +KN+++W II
Sbjct: 534 AKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVII 590
Query: 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------- 309
+ MHG G+ A++ M G+KPN VTF+SV ACSH G+
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 650
Query: 310 -----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVT 364
HY C+VD+LGRAGR+++A ++ +P + LLGA H N+E+GE
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710
Query: 365 RKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ ++++E YVL+ NI + G + A +RR M E+ K PG S +
Sbjct: 711 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 58/323 (17%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKL 125
D FT S ++ C L G +LHA K G + +V +ALV+MY + + ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + +R + WN MI G + + A LF M G+L T
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME-----ESAGLLANST--------- 406
Query: 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245
T+ V+PA ++GA + IHG+ KRG + D V N L+D Y++ G I A
Sbjct: 407 ------TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIA 459
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV------ENFER-----MQKVGLKPNR 294
+++F + E ++LV+W ++I+G+ + A+ +N ER +V LKPN
Sbjct: 460 MRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517
Query: 295 VTFLSVLNACSH-GGLHYG--------------------CLVDMLGRAGRLEQAEKIALG 333
+T +++L +C+ L G LVDM + G L+ + K+
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577
Query: 334 IPSEITDVVVRRILLGACSFHGN 356
IP + +V+ +++ A HGN
Sbjct: 578 IPQK--NVITWNVIIMAYGMHGN 598
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 33/246 (13%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKL 125
D++ + L++ L LG Q+HA + K G+ V V LVN+Y G K+
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185
FD + ERN V+WN +I+ L + + E A F M NV
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV-------------------- 195
Query: 186 TEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCG 240
EPS T+++V+ A G + Q +H YG ++G N+F I N L+ Y K G
Sbjct: 196 -EPSSFTLVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLG 250
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
+ S+ L S ++LV+W +++S + A+E M G++P+ T SV
Sbjct: 251 KLASSKVLLG--SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 301 LNACSH 306
L ACSH
Sbjct: 309 LPACSH 314
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 124/288 (43%), Gaps = 49/288 (17%)
Query: 68 SFTYSFLIRTCVTLSYPN---LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
SFT ++ C L P +G Q+HA + G + +NT LV MY LG L S
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKV 257
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
L R+LVTWN +++ L + +L A EM +L+G
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM----------VLEG---------- 297
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E TI +VLPA +R + +H Y K G + V + L+D Y C + S
Sbjct: 298 -VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNA 303
++F+ + + L W ++I+G++ + K A+ F M++ GL N T V+ A
Sbjct: 357 GRRVFDGMFDRKIGL--WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414
Query: 304 CSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKI 330
C G +H L+DM R G+++ A +I
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 462
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/455 (29%), Positives = 236/455 (51%), Gaps = 77/455 (16%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-----------PKKAFLLYKQLQQIYT-- 56
R+H+H++ T L T L LL FY D P+K + + + Y+
Sbjct: 73 RVHAHMIKTR-YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQT 131
Query: 57 -HSHSPL-----------RPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104
HS L +P + FT++ ++ +C+ S LG Q+H +I K + SH++
Sbjct: 132 GHSSEALTVFAEMMRSDGKP--NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189
Query: 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164
V ++L++MY G +K++ ++F+ LPER++V+ +I G + G E A +F +
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL---- 245
Query: 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224
S G S P+ +T ++L A+ + + + H + +R +
Sbjct: 246 ---------------HSEGMS--PNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY 288
Query: 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFER 284
+ + N LID Y+KCG + A +LF+++ + +SW +++ G++ HG+G+ +E F
Sbjct: 289 AV-LQNSLIDMYSKCGNLSYARRLFDNMP--ERTAISWNAMLVGYSKHGLGREVLELFRL 345
Query: 285 MQ-KVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDMLGR 320
M+ + +KP+ VT L+VL+ CSHG + HYGC+VDMLGR
Sbjct: 346 MRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGR 405
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AGR+++A + +PS+ T V+ LLGAC H +V++GE V R+++E+E N G+YV+
Sbjct: 406 AGRIDEAFEFIKRMPSKPTAGVLGS-LLGACRVHLSVDIGESVGRRLIEIEPENAGNYVI 464
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ N+ A GR+ D +R +M ++ K PGRS +
Sbjct: 465 LSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWI 499
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 166/361 (45%), Gaps = 62/361 (17%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
L P Y L+ C+ G ++HA + K + Y+ T L+ Y L+D
Sbjct: 46 LGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLED 105
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ K+ DE+PE+N+V+W MI+ + G A ++F E M RS
Sbjct: 106 ARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAE------------------MMRS 147
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
+G +P+E T VL + + + + IHG K +++ I V + L+D YAK G
Sbjct: 148 DG---KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH-IFVGSSLLDMYAKAGQ 203
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A ++FE + +++VS T+II+G+A G+ + A+E F R+ G+ PN VT+ S+L
Sbjct: 204 IKEAREIFE--CLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLL 261
Query: 302 NACS------HGGLHY---------------GCLVDMLGRAGRLEQAEKIALGIPSEITD 340
A S HG + L+DM + G L A ++ +P E T
Sbjct: 262 TALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP-ERTA 320
Query: 341 VVVRRILLGACSFHGNVEMGERVTRKVLEM------ERGNGGDYVLMYNILAGV--GRYV 392
+ +L+G S HG + R+VLE+ E+ D V + +L+G GR
Sbjct: 321 ISWNAMLVGY-SKHG-------LGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRME 372
Query: 393 D 393
D
Sbjct: 373 D 373
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 216/423 (51%), Gaps = 47/423 (11%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L+ Y + A ++K++ Q S L+ FD T + C L +G
Sbjct: 115 WNGLISSYVGNGRFEDAIGVFKRMSQ-----ESNLK--FDEGTIVSTLSACSALKNLEIG 167
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+++ + F+ V + ALV+M+ G L + +FD + ++N+ W M+ G V
Sbjct: 168 ERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVST 226
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN----------GASTEPSEITILAVL 197
G ++ AR LFE P ++VV WT +++GY + NR + A P ++++L
Sbjct: 227 GRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLL 286
Query: 198 PAIWQNGAVRNCQLIHGY-GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
Q GA+ + IHGY E R D V L+D YAKCGCI +AL++F +I +
Sbjct: 287 TGCAQTGALEQGKWIHGYINENR--VTVDKVVGTALVDMYAKCGCIETALEVFYEI--KE 342
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
++ SWTS+I G AM+GM A++ + M+ VG++ + +TF++VL AC+HGG
Sbjct: 343 RDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKI 402
Query: 310 ---------------HYGCLVDMLGRAGRLEQAEKIALGI--PSEITDVVVRRILLGACS 352
H CL+D+L RAG L++AE++ + S+ T V V LL A
Sbjct: 403 FHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAAR 462
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
+GNV++ ERV K+ ++E + + L+ ++ A R+ D +RR M + KFPG
Sbjct: 463 NYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGC 522
Query: 413 SLV 415
S +
Sbjct: 523 SSI 525
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 163/381 (42%), Gaps = 96/381 (25%)
Query: 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL 74
LL T SLL ++N +L + S K L+ +L+ L P D+FT +
Sbjct: 5 LLQTPSLL----MYNKMLKSLADGKSFTKVLALFGELRG------QGLYP--DNFTLPVV 52
Query: 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL 134
+++ L G ++H K G + YV+ +L+ MY SLG ++ + K+FDE+P+R++
Sbjct: 53 LKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDV 112
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITIL 194
V+WN +I+ V G E A +F+ M S ++ + E TI+
Sbjct: 113 VSWNGLISSYVGNGRFEDAIGVFKRM--------------------SQESNLKFDEGTIV 152
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEK------RGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ L A A++N ++ GE+ F +R+ N L+D + KCGC+ A +
Sbjct: 153 STLSAC---SALKNLEI----GERIYRFVVTEFE-MSVRIGNALVDMFCKCGCLDKARAV 204
Query: 249 FEDIS--------------------------VER---KNLVSWTSIISGFAMHGMGKAAV 279
F+ + ER K++V WT++++G+ A+
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 280 ENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--------------------CLVDML 318
E F MQ G++P+ +S+L C+ G L G LVDM
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMY 324
Query: 319 GRAGRLEQAEKIALGIPSEIT 339
+ G +E A ++ I T
Sbjct: 325 AKCGCIETALEVFYEIKERDT 345
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/423 (31%), Positives = 213/423 (50%), Gaps = 79/423 (18%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ Y+ + K+A L+K + + + +RP D T ++ C LG
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMK------TNVRP--DESTMVTVVSACAQSGSIELG 285
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q+H I GF S++ + AL+++Y K
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYS-------------------------------KC 314
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
GELE A LFE +P ++V+SW ++ GYT MN A P+++T+L++L
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374
Query: 198 PAIWQNGAVRNCQLIHGYGEKR---GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
PA GA+ + IH Y +KR NA +R S LID YAKCG I +A ++F S+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAKCGDIEAAHQVFN--SI 430
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
K+L SW ++I GFAMHG A+ + F RM+K+G++P+ +TF+ +L+ACSH G+
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC++D+LG +G L + + + + D V+ LL AC
Sbjct: 491 HIFRTMTQDYKMTPKLEHYGCMIDLLGHSG-LFKEAEEMINMMEMEPDGVIWCSLLKACK 549
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
HGNVE+GE ++++E N G YVL+ NI A GR+ + + R +++++ K PG
Sbjct: 550 MHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGC 609
Query: 413 SLV 415
S +
Sbjct: 610 SSI 612
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 178/338 (52%), Gaps = 44/338 (13%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
L++NT+ ++L+ P A LY + L L +S+T+ F++++C
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMIS--------LGLLPNSYTFPFVLKSCAKSKAFK 151
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
G Q+H + K+G +YV+T+L++MYV G L+D+ K+FD+ P R++V++ +I G
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
G +E A+ LF+E+P ++VVSW ++ GY A + P E T++
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ A Q+G++ + +H + + GF + ++++ N LID Y+KCG + +A LFE +
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGS-NLKIVNALIDLYSKCGELETACGLFERLPY- 329
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG-- 312
K+++SW ++I G+ + K A+ F+ M + G PN VT LS+L AC+H G + G
Sbjct: 330 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Query: 313 --------------------CLVDMLGRAGRLEQAEKI 330
L+DM + G +E A ++
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 245 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304
A+ +F+ +++ NL+ W ++ G A+ +A++ + M +GL PN TF VL +C
Sbjct: 87 AISVFK--TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144
Query: 305 S-----------HGG-LHYGC---------LVDMLGRAGRLEQAEKIALGIPSEITDVVV 343
+ HG L GC L+ M + GRLE A K+ P DVV
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR--DVVS 202
Query: 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403
L+ + G +E +++ E+ + + M + A G Y +A L + M +
Sbjct: 203 YTALIKGYASRGYIENAQKLFD---EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259
Query: 404 RN 405
N
Sbjct: 260 TN 261
>sp|Q9FIH2|PP414_ARATH Pentatricopeptide repeat-containing protein At5g42450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2
SV=1
Length = 517
Score = 202 bits (513), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 199/390 (51%), Gaps = 39/390 (10%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP + FT+ +I + T LG QLH K+G S+V+V +A++N YV L L D
Sbjct: 89 IRP--NEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTD 146
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ + FD+ + N+V+ +I+G +K E E A SLF MP R+VV+W ++ G+++ R+
Sbjct: 147 ARRCFDDTRDPNVVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRN 206
Query: 182 NGASTE-----------PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN 230
A P+E T + AI + + IH K F++ V N
Sbjct: 207 EEAVNTFVDMLREGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWN 266
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK-VG 289
LI Y+KCG + +L F + E++N+VSW S+I G+A +G G+ AV FE+M K
Sbjct: 267 SLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTN 326
Query: 290 LKPNRVTFLSVLNACSHGGL------------------------HYGCLVDMLGRAGRLE 325
L+PN VT L VL AC+H GL HY C+VDML R+GR +
Sbjct: 327 LRPNNVTILGVLFACNHAGLIQEGYMYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFK 386
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+AE++ +P + + + LLG C H N + + K+LE++ + YV++ N
Sbjct: 387 EAEELIKSMPLD-PGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAY 445
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+ + + + +RR M E +F G S +
Sbjct: 446 SAMENWQNVSLIRRKMKETGLKRFTGCSWI 475
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
++ ++++ K+FDE+PE ++++ +I VK A F+ + C GI
Sbjct: 37 HIDSDLIRNAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLC------LGIR 90
Query: 173 DGYTRMNRSNGASTEPSEITI----------LAVLPAIWQNGAVRNC--QLIHGYGEKRG 220
G+ST ++ + + + ++ AV NC +L +R
Sbjct: 91 PNEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRC 150
Query: 221 FNAFDIRVSNC-----LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275
F+ D R N LI Y K AL LF ++ +++V+W ++I GF+ G
Sbjct: 151 FD--DTRDPNVVSITNLISGYLKKHEFEEALSLFR--AMPERSVVTWNAVIGGFSQTGRN 206
Query: 276 KAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLH------YGCLVDMLGR 320
+ AV F M + G+ PN TF + A S+ H + C + LG+
Sbjct: 207 EEAVNTFVDMLREGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGK 258
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 202 bits (513), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 67/428 (15%)
Query: 23 HHTLLFNTLLHFYSLADSPKK-AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81
H + ++NTL+ + S K+ AF+LY+++ + SP D T+ F+++ C +
Sbjct: 112 HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE--RGESSP-----DKHTFPFVLKACAYI 164
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI 141
+ G Q+H I K GF VYVN L+++Y S G L + K+FDE+PER+LV+WN MI
Sbjct: 165 FGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 224
Query: 142 TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201
LV++GE + A LF EM S EP T+ +VL A
Sbjct: 225 DALVRFGEYDSALQLFREM----------------------QRSFEPDGYTMQSVLSACA 262
Query: 202 QNGAVRNCQLIHGYGEKRG--FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
G++ H + ++ A D+ V N LI+ Y KCG + A ++F+ +++++L
Sbjct: 263 GLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GMQKRDL 320
Query: 260 VSWTSIISGFAMHGMGKAAVENFERM--QKVGLKPNRVTFLSVLNACSHGGL-------- 309
SW ++I GFA HG + A+ F+RM ++ ++PN VTF+ +L AC+H G
Sbjct: 321 ASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYF 380
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD++ RAG + +A + + +P + D V+ R LL AC G
Sbjct: 381 DMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRSLLDACCKKG 439
Query: 356 -NVEMGERVTRKVL----EMERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407
+VE+ E + R ++ + E NG G YVL+ + A R+ D +R++M E
Sbjct: 440 ASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIR 499
Query: 408 KFPGRSLV 415
K PG S +
Sbjct: 500 KEPGCSSI 507
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 213/413 (51%), Gaps = 43/413 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+NT++ Y+ + +A YK+ ++ S ++ F+ F+++ L+ CV L
Sbjct: 147 WNTMVIGYAQDGNLHEALWFYKEFRR------SGIK--FNEFSFAGLLTACVKSRQLQLN 198
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
Q H + GF S+V ++ ++++ Y G ++ + + FDE+ +++ W +I+G K
Sbjct: 199 RQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G++E A LF EMP +N VSWT ++ GY R N A +P + T + L
Sbjct: 259 GDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCL 318
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A ++R+ + IHGY + I +S+ LID Y+K G + ++ ++F I ++
Sbjct: 319 CASASIASLRHGKEIHGYMIRTNVRPNAIVISS-LIDMYSKSGSLEASERVFR-ICDDKH 376
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
+ V W ++IS A HG+G A+ + M K ++PNR T + +LNACSH GL
Sbjct: 377 DCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWF 436
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY CL+D+LGRAG ++ + +P E D + +LG C HG
Sbjct: 437 ESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFE-PDKHIWNAILGVCRIHG 495
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
N E+G++ ++++++ + Y+L+ +I A G++ E+LR VM +R K
Sbjct: 496 NEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNK 548
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 176/386 (45%), Gaps = 70/386 (18%)
Query: 47 LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SHVYV 105
L + + ++ + + +R FD + L++ C G +H + GF+ + +
Sbjct: 27 LSQAVSRLESLTQQGIRLPFD--LLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLL 84
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
+ L+ MY+ G D+ K+FD++ RNL +WN M++G VK G L AR +F+ MP R+V
Sbjct: 85 SNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDV 144
Query: 166 VSWTGILDGYTR-------------MNRSNGASTEPSEITILA----------------- 195
VSW ++ GY + RS E S +L
Sbjct: 145 VSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQ 204
Query: 196 VLPAIWQNGAVRNCQLIHGYGE-------KRGFNAF---DIRVSNCLIDTYAKCGCIFSA 245
VL A + + V +C +I Y + KR F+ DI + LI YAK G + +A
Sbjct: 205 VLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAA 264
Query: 246 LKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305
KLF + KN VSWT++I+G+ G G A++ F +M +G+KP + TF S L A +
Sbjct: 265 EKLF--CEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASA 322
Query: 306 ------HGGLHYG---------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
HG +G L+DM ++G LE +E++ I + D V
Sbjct: 323 SIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERV-FRICDDKHDCVFW 381
Query: 345 RILLGACSFHGNVEMGERVTRKVLEM 370
++ A + HG +G + R + +M
Sbjct: 382 NTMISALAQHG---LGHKALRMLDDM 404
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 194/387 (50%), Gaps = 41/387 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
D T + +I C +LS +G ++H V+ ++ + ++ A V+MY +K++ +
Sbjct: 252 DEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFI 311
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD +P RN++ MI+G + AR +F +M RNVVSW ++ GYT+ + A
Sbjct: 312 FDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEAL 371
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-----AFDIRVSN 230
S P+ + +L A + H + K GF DI V N
Sbjct: 372 SLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGN 431
Query: 231 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
LID Y KCGC+ +F + +ER + VSW ++I GFA +G G A+E F M + G
Sbjct: 432 SLIDMYVKCGCVEEGYLVFRKM-MER-DCVSWNAMIIGFAQNGYGNEALELFREMLESGE 489
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
KP+ +T + VL+AC H G HY C+VD+LGRAG LE+A+
Sbjct: 490 KPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAK 549
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+ +P + D V+ LL AC H N+ +G+ V K+LE+E N G YVL+ N+ A +
Sbjct: 550 SMIEEMPMQ-PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAEL 608
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
G++ D +R+ M + K PG S +
Sbjct: 609 GKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 36/309 (11%)
Query: 60 SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQ-LHAVISKVGFQSHVYVNTALVNMYVSLGF 118
+ L DS ++ L+ +C+ + + +HA + K GF + +++ L++ Y G
Sbjct: 11 ADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGS 70
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L+D ++FD++P+RN+ TWN ++TGL K G L+ A SLF MP R+ +W ++ G+ +
Sbjct: 71 LEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 179 NRSNGA----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+R A +E + +VL A + +H K F + D+ +
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS-DVYI 189
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
+ L+D Y+KCG + A ++F+++ +N+VSW S+I+ F +G A++ F+ M +
Sbjct: 190 GSALVDMYSKCGNVNDAQRVFDEMG--DRNVVSWNSLITCFEQNGPAVEALDVFQMMLES 247
Query: 289 GLKPNRVTFLSVLNACS-----------HGG-----------LHYGCLVDMLGRAGRLEQ 326
++P+ VT SV++AC+ HG + VDM + R+++
Sbjct: 248 RVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKE 307
Query: 327 AEKIALGIP 335
A I +P
Sbjct: 308 ARFIFDSMP 316
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 62/337 (18%)
Query: 65 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
+ + ++++ ++ C L+ N G Q+H++I+K F S VY+ +ALV+MY G + D+ +
Sbjct: 149 VLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQR 208
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
+FDE+ +RN+V+WN +IT + G A +F+ M V
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV------------------- 249
Query: 185 STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244
EP E+T+ +V+ A A++ Q +HG K DI +SN +D YAKC I
Sbjct: 250 --EPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKE 307
Query: 245 ALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMG 275
A +F+ + + +N+VSW ++I+G+ +G
Sbjct: 308 ARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGEN 367
Query: 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSH-GGLHYG--CLVDMLGRAGRLEQAEKIAL 332
+ A+ F +++ + P +F ++L AC+ LH G V +L + + E+ +
Sbjct: 368 EEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDI 427
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLE 369
+ + + D+ V+ C G VE G V RK++E
Sbjct: 428 FVGNSLIDMYVK------C---GCVEEGYLVFRKMME 455
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 201 bits (511), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 210/413 (50%), Gaps = 54/413 (13%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T FNT++ Y S ++A Y ++ Q + P D+FTY L++ C L
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQ---RGNEP-----DNFTYPCLLKACTRLKSI 148
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
G Q+H + K+G ++ V+V +L+NMY G ++ SS +F++L + +W+ M++
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSAR 208
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG 204
G LF R + S T + + E +++ L A G
Sbjct: 209 AGMGMWSECLLLF-----RGMCSETNL---------------KAEESGMVSALLACANTG 248
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ IHG+ R + +I V L+D Y KCGC+ AL +F+ + E++N +++++
Sbjct: 249 ALNLGMSIHGF-LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKM--EKRNNLTYSA 305
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------- 309
+ISG A+HG G++A+ F +M K GL+P+ V ++SVLNACSH GL
Sbjct: 306 MISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEG 365
Query: 310 -------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362
HYGCLVD+LGRAG LE+A + IP E DV+ R L C N+E+G+
Sbjct: 366 KVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIW-RTFLSQCRVRQNIELGQI 424
Query: 363 VTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+++L++ N GDY+L+ N+ + + D R R + + + PG S+V
Sbjct: 425 AAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIV 477
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 190/376 (50%), Gaps = 67/376 (17%)
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V+ TA+V+ Y+ ++++ +LFD++PERN V+WN M+ G V+ +E A+ LF+ MPC
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPC 340
Query: 163 RNVVSWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNG------------ 204
RNV +W ++ GY + + + A + ++ A++ Q+G
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 205 --------------AVRNC---------QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
A+ C + +HG K G+ V N L+ Y KCG
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCFVGNALLLMYCKCGS 459
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
I A LF++++ K++VSW ++I+G++ HG G+ A+ FE M++ GLKP+ T ++VL
Sbjct: 460 IEEANDLFKEMA--GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 302 NACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339
+ACSH GL HY C+VD+LGRAG LE A + +P E
Sbjct: 518 SACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE-P 576
Query: 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399
D + LLGA HGN E+ E K+ ME N G YVL+ N+ A GR+ D +LR
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636
Query: 400 VMDERNALKFPGRSLV 415
M ++ K PG S +
Sbjct: 637 RMRDKGVKKVPGYSWI 652
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 58/285 (20%)
Query: 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168
++ Y G + ++ +LFDE P +++ TW M++G ++ +E AR LF++MP RN VSW
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSW 315
Query: 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228
+L GY + R A + V+P C+ ++
Sbjct: 316 NAMLAGYVQGERMEMAK------ELFDVMP----------CR--------------NVST 345
Query: 229 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288
N +I YA+CG I A LF+ + +++ VSW ++I+G++ G A+ F +M++
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMP--KRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE 403
Query: 289 GLKPNRVTFLSVLNACS----------------HGGLHYGCLVD-----MLGRAGRLEQA 327
G + NR +F S L+ C+ GG GC V M + G +E+A
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372
+ + + D+V ++ S HG GE R M+R
Sbjct: 464 NDLFKEMAGK--DIVSWNTMIAGYSRHG---FGEVALRFFESMKR 503
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 36/212 (16%)
Query: 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
+++ Y+ G + + KLFDE+PER+LV+WNVMI G V+ L AR LFE MP R+V
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 167 SWTGILDGYTRMNRSNGAST------EPSEITILAVLPAIWQNGAVR------------- 207
SW +L GY + + A + E ++++ A+L A QN +
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218
Query: 208 ----NCQLIHGYGEKR----------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253
NC L+ G+ +K+ N D+ N +I YA+ G I A +LF++
Sbjct: 219 LVSWNC-LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESP 277
Query: 254 VERKNLVSWTSIISGFAMHGMGKAAVENFERM 285
V+ ++ +WT+++SG+ + M + A E F++M
Sbjct: 278 VQ--DVFTWTAMVSGYIQNRMVEEARELFDKM 307
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Query: 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169
++ Y+ G ++ ++F +P + V++N MI+G ++ GE E AR LF+EMP R++VSW
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWN 130
Query: 170 GILDGYTRMNRSNGASTEPSEI-------TILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
++ GY R NR+ G + E EI + +L QNG V + + + ++
Sbjct: 131 VMIKGYVR-NRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV 189
Query: 223 AFDIRVS--------------------------NCLIDTYAKCGCIFSALKLFEDISVER 256
+++ +S NCL+ + K I A + F+ ++V
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV-- 247
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFE 283
+++VSW +II+G+A G A + F+
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFD 274
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129
++S + TC + LG QLH + K G+++ +V AL+ MY G +++++ LF E+
Sbjct: 411 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 470
Query: 130 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189
+++V+WN MI G + G E A FE M + +P
Sbjct: 471 AGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGL---------------------KPD 509
Query: 190 EITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248
+ T++AVL A G V + Q + + G + C++D + G + A L
Sbjct: 510 DATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYA-CMVDLLGRAGLLEDAHNL 568
Query: 249 FEDISVERKNLVSWTSIISGFAMHG 273
+++ E + W +++ +HG
Sbjct: 569 MKNMPFEPDAAI-WGTLLGASRVHG 592
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 120 KDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179
K +K + + ++ WNV I+ ++ G A +F+ MP + VS+ G++ GY R
Sbjct: 50 KSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNG 109
Query: 180 RSNGASTEPSEITILAVLPAIWQ---NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
A E+ ++ W G VRN L D+ N ++ Y
Sbjct: 110 EFELARKLFDEMPERDLVS--WNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGY 167
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
A+ GC+ A +F+ + KN VSW +++S + + + A F+ + L
Sbjct: 168 AQNGCVDDARSVFDRMP--EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL 219
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 230/469 (49%), Gaps = 70/469 (14%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHFYS-----------LADSP---------------KK 43
+IH H++ + L L+N+L+ FY A P K+
Sbjct: 151 QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQ 210
Query: 44 AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG--FQS 101
F L + L+ + + P D +T L+ C LS LG +H I + G + S
Sbjct: 211 GFSL-EALKLYFKMVSDGIEP--DEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSS 267
Query: 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
++ ++ AL++MY + + FD + ++++ +WN M+ G V+ G++E A+++F++MP
Sbjct: 268 NLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMP 327
Query: 162 CRNVVSWTGILDGYTRMNRSNGASTE------------PSEITILAVLPAIWQNGAVRNC 209
R++VSW +L GY++ E P +T+++++ NG + +
Sbjct: 328 KRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHG 387
Query: 210 QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269
+ +HG + D +S+ LID Y KCG I A +F+ + K++ WTS+I+G
Sbjct: 388 RWVHGLVIRLQLKG-DAFLSSALIDMYCKCGIIERAFMVFK--TATEKDVALWTSMITGL 444
Query: 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------------- 309
A HG G+ A++ F RMQ+ G+ PN VT L+VL ACSH GL
Sbjct: 445 AFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPE 504
Query: 310 --HYGCLVDMLGRAGRLEQAEKIAL-GIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366
HYG LVD+L RAGR+E+A+ I +P + + I L AC ++E E +
Sbjct: 505 TEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSI-LSACRGGEDIETAELALTE 563
Query: 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+L++E G YVL+ NI A VGR+ +++ R M+ R K G S V
Sbjct: 564 LLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 170/389 (43%), Gaps = 94/389 (24%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+ ++NT++ +++ S + F LY + + H SP D T+ +L++ LS
Sbjct: 99 NVFVYNTMIS--AVSSSKNECFGLYSSMIR---HRVSP-----DRQTFLYLMKASSFLSE 148
Query: 84 PNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMIT 142
Q+H I G S Y+ +LV Y+ LG + K+F +P ++ ++NVMI
Sbjct: 149 VK---QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIV 205
Query: 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ 202
G K G A L+ +M + DG EP E T+L++L
Sbjct: 206 GYAKQGFSLEALKLYFKM----------VSDG-----------IEPDEYTVLSLLVCCGH 244
Query: 203 NGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 261
+R + +HG+ E+RG + ++ +SN L+D Y KC A + F+ ++++K++ S
Sbjct: 245 LSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFD--AMKKKDMRS 302
Query: 262 WTSIISGFAMHGMGKAAVENFERMQKVGL------------------------------- 290
W +++ GF G +AA F++M K L
Sbjct: 303 WNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVE 362
Query: 291 --KPNRVTFLSVLN-ACSHGGLHYG--------------------CLVDMLGRAGRLEQA 327
KP+RVT +S+++ A ++G L +G L+DM + G +E+A
Sbjct: 363 KVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERA 422
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGN 356
+ +E DV + ++ +FHGN
Sbjct: 423 -FMVFKTATE-KDVALWTSMITGLAFHGN 449
>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970
OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
Length = 472
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 173/318 (54%), Gaps = 50/318 (15%)
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGY-TRMNRSN----------------GASTE 187
K G+L YAR +F+EMP R V+W ++ GY + ++ N G+
Sbjct: 158 AKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVR 217
Query: 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSAL 246
P++ T++ VL AI Q G + L+HGY EK GF D+ + L+D Y+KCGC+ +A
Sbjct: 218 PTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAF 277
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+FE + V KN+ +WTS+ +G A++G G RM + G+KPN +TF S+L+A H
Sbjct: 278 SVFELMKV--KNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRH 335
Query: 307 GGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR 344
GL HYGC+VD+LG+AGR+++A + L +P + D ++
Sbjct: 336 IGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIK-PDAILL 394
Query: 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGG-------DYVLMYNILAGVGRYVDAERL 397
R L ACS +G MGE + + +LE+ER + DYV + N+LA G++V+ E+L
Sbjct: 395 RSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKL 454
Query: 398 RRVMDERNALKFPGRSLV 415
R+ M ER PG S V
Sbjct: 455 RKEMKERRIKTRPGYSFV 472
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265
+R +++HG +K GF + L+ YAK G + A K+F+++ ER + V+W ++
Sbjct: 127 LRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMP-ERTS-VTWNAM 184
Query: 266 ISGFAMHG-----MGKAAVENFERMQ--KVGLKPNRVTFLSVLNACSHGGL 309
I G+ H + A+ F R G++P T + VL+A S GL
Sbjct: 185 IGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGL 235
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 198 bits (504), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 216/424 (50%), Gaps = 65/424 (15%)
Query: 24 HTLLFNTLLHFYSLADSP----KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79
++ +++T++ S + P + L+ K+ ++ T S+ T+ FLI C+
Sbjct: 77 NSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSY---------LTFHFLIVACL 127
Query: 80 TLSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWN 138
+ ++G Q+H + K G F S +V T ++ +YV L D+ K+FDE+P+ ++V W+
Sbjct: 128 KACFFSVGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWD 187
Query: 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP 198
V++ G V+ G +F+EM R + EP E ++ L
Sbjct: 188 VLMNGYVRCGLGSEGLEVFKEMLVRGI---------------------EPDEFSVTTALT 226
Query: 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258
A Q GA+ + IH + +K+ + D+ V L+D YAKCGCI +A+++FE ++ R+N
Sbjct: 227 ACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLT--RRN 284
Query: 259 LVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGL-------- 309
+ SW ++I G+A +G K A +R+++ G+KP+ V L VL AC+HGG
Sbjct: 285 VFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTML 344
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY C+VD++ RAGRL+ A + +P + V LL C H
Sbjct: 345 ENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPL-ASVWGALLNGCRTHK 403
Query: 356 NVEMGERVTRKVLEMERGN----GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPG 411
NVE+GE + +L++E+GN V + NI V R +A ++R ++++R K PG
Sbjct: 404 NVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPG 463
Query: 412 RSLV 415
SL+
Sbjct: 464 WSLL 467
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 216/423 (51%), Gaps = 63/423 (14%)
Query: 24 HTLLFNTLLHFYSLADSPK---KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80
++ +++T++ S + P + FLL + ++ + P + T+ FLI C+
Sbjct: 77 NSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEE------EDIAPSY--LTFHFLIVACLK 128
Query: 81 LSYPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNV 139
+ ++G Q+H + K G F S +V T ++ +YV L D+ K+FDE+P+ ++V W+V
Sbjct: 129 ACFFSVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDV 188
Query: 140 MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA 199
++ G V+ G +F EM + + EP E ++ L A
Sbjct: 189 LMNGYVRCGLGSEGLEVFREMLVKGL---------------------EPDEFSVTTALTA 227
Query: 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259
Q GA+ + IH + +K+ + D+ V L+D YAKCGCI +A+++F+ ++ R+N+
Sbjct: 228 CAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLT--RRNV 285
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGL--------- 309
SW ++I G+A +G K A+ ER+++ G+KP+ V L VL AC+HGG
Sbjct: 286 FSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLE 345
Query: 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356
HY C+VD++ RAGRL+ A + +P + V LL C H N
Sbjct: 346 NMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPL-ASVWGALLNGCRTHKN 404
Query: 357 VEMGERVTRKVLEMERGN----GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
VE+GE + +L++E+GN V + NI V R +A ++R ++++R K PG
Sbjct: 405 VELGELAVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGW 464
Query: 413 SLV 415
S++
Sbjct: 465 SVL 467
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 200/387 (51%), Gaps = 41/387 (10%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D T+ FL+ + + LG + HA I G +V T+L+NMY S G L+ + ++F
Sbjct: 61 DFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVF 120
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT---------- 176
D+ ++L WN ++ K G ++ AR LF+EMP RNV+SW+ +++GY
Sbjct: 121 DDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALD 180
Query: 177 -----RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
++ + N A P+E T+ VL A + GA+ + +H Y +K DI +
Sbjct: 181 LFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVE-IDIVLGTA 239
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GL 290
LID YAKCG + A ++F + +K++ +++++I AM+G+ + F M +
Sbjct: 240 LIDMYAKCGSLERAKRVFNALG-SKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNI 298
Query: 291 KPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAE 328
PN VTF+ +L AC H GL HYGC+VD+ GR+G +++AE
Sbjct: 299 NPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAE 358
Query: 329 KIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388
+P E DV++ LL G+++ E ++++E++ N G YVL+ N+ A
Sbjct: 359 SFIASMPME-PDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKT 417
Query: 389 GRYVDAERLRRVMDERNALKFPGRSLV 415
GR+++ + +R M+ + K PG S V
Sbjct: 418 GRWMEVKCIRHEMEVKGINKVPGCSYV 444
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 209/420 (49%), Gaps = 73/420 (17%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N ++ ++ + P AF Y+ + Q + S + R D+ T SF ++ C +
Sbjct: 71 WNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICR--VDALTCSFTLKACARALCSSAM 128
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
QLH I++ G + + T L++ Y K
Sbjct: 129 DQLHCQINRRGLSADSLLCTTLLDAYS-------------------------------KN 157
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-------STE---PSEITILAVL 197
G+L A LF+EMP R+V SW ++ G NR++ A TE SE+T++A L
Sbjct: 158 GDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAAL 217
Query: 198 PAIWQNGAVRNCQ-LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256
A G V+ + + HGY ++ VSN ID Y+KCG + A ++FE + +
Sbjct: 218 GACSHLGDVKEGENIFHGYSND------NVIVSNAAIDMYSKCGFVDKAYQVFEQFT-GK 270
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------- 309
K++V+W ++I+GFA+HG A+E F++++ G+KP+ V++L+ L AC H GL
Sbjct: 271 KSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSV 330
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HYGC+VD+L RAGRL +A I + S I D V+ + LLGA +
Sbjct: 331 FNNMACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSM-SMIPDPVLWQSLLGASEIYS 389
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
+VEM E +R++ EM N GD+VL+ N+ A GR+ D R+R M+ + K PG S +
Sbjct: 390 DVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYI 449
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 126/281 (44%), Gaps = 44/281 (15%)
Query: 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-STEPSEITILAVLPAIWQNGA 205
+G+L +A +F +P W I+ G+ + + A S S + + AI + A
Sbjct: 50 FGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDA 109
Query: 206 ------VRNC---------QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
++ C +H +RG +A D + L+D Y+K G + SA KLF+
Sbjct: 110 LTCSFTLKACARALCSSAMDQLHCQINRRGLSA-DSLLCTTLLDAYSKNGDLISAYKLFD 168
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310
++ V +++ SW ++I+G A+E ++RM+ G++ + VT ++ L ACSH
Sbjct: 169 EMPV--RDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSH---- 222
Query: 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370
G +++ E I G ++ +V+V + S G V+ +V
Sbjct: 223 ----------LGDVKEGENIFHGYSND--NVIVSNAAIDMYSKCGFVDKAYQV------F 264
Query: 371 ERGNGGDYVLMYN-ILAGVGRYVDAERLRRVMD--ERNALK 408
E+ G V+ +N ++ G + +A R + D E N +K
Sbjct: 265 EQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIK 305
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 141/461 (30%), Positives = 224/461 (48%), Gaps = 87/461 (18%)
Query: 10 RIHSHLLTTNSLLHHTLLFNTLLHF--YSLADSPKKAFLLYKQ------------LQQIY 55
+IHSH++ N L HH +FN LL F S+ S A LL+ L + +
Sbjct: 23 KIHSHVII-NGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYLIRGF 81
Query: 56 THSHSPLRPLF-------------DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102
++S SPL + D FT++F +++C + ++H + + GF
Sbjct: 82 SNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDD 141
Query: 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
V T+LV Y + G ++ +SK+FDE+P R+LV+WNVMI G A S+++ M
Sbjct: 142 AIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGN 201
Query: 163 RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
V D Y T++A+L + A+ ++H
Sbjct: 202 EGVCG-----DSY----------------TLVALLSSCAHVSALNMGVMLHRI------- 233
Query: 223 AFDIR------VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
A DIR VSN LID YAKCG + +A+ +F + ++++++W S+I G+ +HG G
Sbjct: 234 ACDIRCESCVFVSNALIDMYAKCGSLENAIGVFN--GMRKRDVLTWNSMIIGYGVHGHGV 291
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCL 314
A+ F +M G++PN +TFL +L CSH GL HYGC+
Sbjct: 292 EAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCM 351
Query: 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374
VD+ GRAG+LE + ++ S D V+ R LLG+C H N+E+GE +K++++E N
Sbjct: 352 VDLYGRAGQLENSLEMIYA-SSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFN 410
Query: 375 GGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
GDYVLM +I + +R+++ + PG S +
Sbjct: 411 AGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWI 451
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,537,202
Number of Sequences: 539616
Number of extensions: 6271714
Number of successful extensions: 18416
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 13105
Number of HSP's gapped (non-prelim): 1627
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)