Query 039757
Match_columns 415
No_of_seqs 465 out of 1505
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 12:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.6E-63 5.7E-68 482.1 37.6 401 3-415 101-568 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-60 2.4E-65 474.4 37.5 395 3-415 302-731 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1E-57 2.2E-62 453.1 37.0 386 4-409 202-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.5E-57 5.3E-62 443.7 38.5 381 3-410 384-789 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.6E-56 3.5E-61 438.0 39.6 380 3-410 420-847 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4E-53 8.6E-58 411.0 36.5 368 21-401 83-488 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.3E-26 1.6E-30 229.3 39.8 387 3-406 445-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.5E-26 1.9E-30 228.8 40.2 384 3-402 479-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.2E-22 2.6E-27 185.7 29.5 304 70-413 37-356 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3.1E-26 178.6 29.8 298 32-373 42-350 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 1.4E-21 3E-26 172.6 24.4 354 25-406 116-487 (966)
12 PRK15174 Vi polysaccharide exp 99.9 1.3E-19 2.8E-24 174.0 32.7 318 28-373 45-384 (656)
13 PRK15174 Vi polysaccharide exp 99.9 3E-19 6.4E-24 171.5 35.0 332 2-374 55-407 (656)
14 TIGR00990 3a0801s09 mitochondr 99.9 8.4E-19 1.8E-23 168.8 36.1 241 148-405 308-572 (615)
15 PRK11447 cellulose synthase su 99.9 1.2E-18 2.6E-23 178.4 37.6 373 2-402 282-738 (1157)
16 KOG4626 O-linked N-acetylgluco 99.9 1.7E-19 3.6E-24 159.6 24.7 361 3-392 130-507 (966)
17 PRK11447 cellulose synthase su 99.9 7.7E-18 1.7E-22 172.5 37.8 364 32-407 276-703 (1157)
18 PRK10049 pgaA outer membrane p 99.8 4.2E-17 9E-22 160.0 40.2 379 2-406 28-458 (765)
19 PRK14574 hmsH outer membrane p 99.8 1.2E-16 2.6E-21 154.3 37.4 377 2-406 47-515 (822)
20 PRK10049 pgaA outer membrane p 99.8 3.3E-16 7.1E-21 153.8 32.7 359 24-405 14-423 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-15 2.6E-20 147.1 35.7 352 27-406 129-498 (615)
22 PRK09782 bacteriophage N4 rece 99.8 4.1E-15 8.8E-20 146.7 38.3 85 75-161 189-274 (987)
23 KOG2076 RNA polymerase III tra 99.7 1.2E-14 2.5E-19 134.7 30.4 354 21-414 135-522 (895)
24 PRK14574 hmsH outer membrane p 99.7 2.9E-13 6.3E-18 131.1 37.6 352 32-404 41-479 (822)
25 PRK09782 bacteriophage N4 rece 99.7 1.6E-13 3.5E-18 135.6 36.0 203 188-407 540-743 (987)
26 KOG4422 Uncharacterized conser 99.7 2E-13 4.3E-18 116.5 30.9 338 67-408 206-594 (625)
27 PRK10747 putative protoheme IX 99.7 1.6E-13 3.5E-18 124.6 29.2 126 28-164 85-217 (398)
28 KOG2003 TPR repeat-containing 99.7 7.4E-14 1.6E-18 120.0 24.8 244 144-390 429-709 (840)
29 KOG2076 RNA polymerase III tra 99.6 2E-12 4.3E-17 120.2 32.7 272 2-286 152-510 (895)
30 PF13429 TPR_15: Tetratricopep 99.6 6.4E-16 1.4E-20 134.2 8.7 163 225-402 109-275 (280)
31 PF13429 TPR_15: Tetratricopep 99.6 1.5E-15 3.3E-20 131.8 10.9 266 23-336 7-276 (280)
32 TIGR00540 hemY_coli hemY prote 99.6 1.3E-12 2.9E-17 119.3 30.4 124 28-162 85-215 (409)
33 KOG1126 DNA-binding cell divis 99.6 6E-14 1.3E-18 126.1 20.7 280 40-404 334-620 (638)
34 PRK10747 putative protoheme IX 99.6 3.6E-13 7.9E-18 122.4 26.2 282 80-403 96-389 (398)
35 KOG2002 TPR-containing nuclear 99.6 1.5E-12 3.3E-17 121.8 29.9 390 7-406 254-711 (1018)
36 COG2956 Predicted N-acetylgluc 99.6 2.8E-12 6.1E-17 105.7 24.5 292 38-373 48-350 (389)
37 COG2956 Predicted N-acetylgluc 99.6 8.5E-12 1.9E-16 103.0 26.1 305 70-413 38-356 (389)
38 KOG4422 Uncharacterized conser 99.6 1.3E-11 2.9E-16 105.6 27.7 344 29-405 120-552 (625)
39 KOG1126 DNA-binding cell divis 99.6 9.7E-13 2.1E-17 118.5 21.4 280 6-337 336-620 (638)
40 KOG1915 Cell cycle control pro 99.6 3.1E-11 6.8E-16 104.6 29.6 377 2-404 86-500 (677)
41 KOG2002 TPR-containing nuclear 99.6 5.5E-12 1.2E-16 118.2 26.8 393 2-406 283-747 (1018)
42 TIGR00540 hemY_coli hemY prote 99.6 7E-12 1.5E-16 114.6 26.8 284 79-403 95-398 (409)
43 KOG4318 Bicoid mRNA stability 99.5 4.9E-12 1.1E-16 117.3 23.5 238 47-309 12-286 (1088)
44 KOG0547 Translocase of outer m 99.5 3.4E-11 7.5E-16 104.8 26.4 344 28-402 118-564 (606)
45 KOG0495 HAT repeat protein [RN 99.5 4.3E-10 9.4E-15 101.4 32.8 357 26-414 517-888 (913)
46 COG3071 HemY Uncharacterized e 99.5 8.6E-11 1.9E-15 100.0 27.0 126 30-164 87-217 (400)
47 TIGR02521 type_IV_pilW type IV 99.5 2.4E-11 5.2E-16 102.6 23.7 201 189-404 30-232 (234)
48 KOG1155 Anaphase-promoting com 99.5 1.7E-11 3.7E-16 106.0 22.1 348 21-402 158-534 (559)
49 KOG0495 HAT repeat protein [RN 99.5 1E-09 2.2E-14 99.1 31.8 346 34-405 415-783 (913)
50 KOG1155 Anaphase-promoting com 99.4 1.9E-10 4.1E-15 99.6 24.6 218 103-372 330-555 (559)
51 PF13041 PPR_2: PPR repeat fam 99.4 5.3E-13 1.1E-17 82.0 6.4 50 257-306 1-50 (50)
52 KOG1915 Cell cycle control pro 99.4 3.4E-09 7.3E-14 92.3 30.2 370 3-405 121-537 (677)
53 PRK12370 invasion protein regu 99.4 1.5E-10 3.2E-15 110.0 23.3 247 118-405 276-536 (553)
54 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.5E-15 97.6 21.0 196 69-287 32-231 (234)
55 KOG1129 TPR repeat-containing 99.4 2.5E-11 5.4E-16 100.4 14.9 228 138-405 227-459 (478)
56 COG3071 HemY Uncharacterized e 99.4 1.9E-09 4.1E-14 92.0 26.4 277 2-293 97-395 (400)
57 PRK12370 invasion protein regu 99.4 2.3E-10 5E-15 108.7 22.4 244 3-288 275-535 (553)
58 KOG2003 TPR repeat-containing 99.3 7E-10 1.5E-14 96.0 21.5 277 33-356 427-709 (840)
59 KOG1840 Kinesin light chain [C 99.3 2.6E-10 5.6E-15 103.8 18.9 198 196-403 247-478 (508)
60 PF13041 PPR_2: PPR repeat fam 99.3 5.4E-12 1.2E-16 77.5 5.6 50 23-80 1-50 (50)
61 PF12569 NARP1: NMDA receptor- 99.3 1.5E-08 3.2E-13 93.6 30.1 250 33-294 12-297 (517)
62 KOG0547 Translocase of outer m 99.3 7.5E-10 1.6E-14 96.6 19.1 317 71-406 118-534 (606)
63 KOG2047 mRNA splicing factor [ 99.3 8.8E-08 1.9E-12 86.7 31.7 387 3-402 116-613 (835)
64 KOG1840 Kinesin light chain [C 99.2 1.4E-09 3E-14 99.1 20.2 240 69-369 200-478 (508)
65 KOG1156 N-terminal acetyltrans 99.2 2.5E-08 5.4E-13 90.3 27.6 365 30-406 46-470 (700)
66 PF04733 Coatomer_E: Coatomer 99.2 6.1E-10 1.3E-14 95.7 16.6 152 235-403 111-264 (290)
67 PRK11189 lipoprotein NlpI; Pro 99.2 9.1E-10 2E-14 96.0 17.5 195 191-407 65-268 (296)
68 KOG4162 Predicted calmodulin-b 99.2 2.5E-08 5.4E-13 92.0 26.6 358 17-406 315-785 (799)
69 KOG1174 Anaphase-promoting com 99.2 1E-08 2.2E-13 87.9 21.8 311 23-381 192-511 (564)
70 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.7E-13 88.0 23.2 209 135-385 65-281 (296)
71 KOG1174 Anaphase-promoting com 99.1 6.8E-07 1.5E-11 77.0 29.9 271 99-407 228-503 (564)
72 KOG1173 Anaphase-promoting com 99.1 2.3E-08 5E-13 89.1 20.8 255 132-403 242-517 (611)
73 COG3063 PilF Tfp pilus assembl 99.1 3.2E-08 7E-13 78.5 19.4 200 136-374 37-240 (250)
74 cd05804 StaR_like StaR_like; a 99.1 6E-07 1.3E-11 81.2 30.9 305 67-405 5-337 (355)
75 KOG1129 TPR repeat-containing 99.1 5.5E-09 1.2E-13 86.8 15.6 228 106-373 226-461 (478)
76 COG3063 PilF Tfp pilus assembl 99.1 3.8E-08 8.2E-13 78.1 19.3 196 193-403 38-235 (250)
77 KOG3785 Uncharacterized conser 99.1 2.2E-07 4.7E-12 78.4 24.9 360 32-408 29-494 (557)
78 PF04733 Coatomer_E: Coatomer 99.1 4.1E-08 8.9E-13 84.5 21.5 257 75-374 8-269 (290)
79 KOG1173 Anaphase-promoting com 99.1 5E-08 1.1E-12 87.1 22.1 280 71-385 247-533 (611)
80 KOG4340 Uncharacterized conser 99.1 1.5E-07 3.2E-12 77.6 22.4 293 28-400 13-335 (459)
81 PF12569 NARP1: NMDA receptor- 99.0 9.4E-08 2E-12 88.3 22.5 93 314-406 200-293 (517)
82 cd05804 StaR_like StaR_like; a 99.0 1.5E-06 3.3E-11 78.5 29.7 303 26-371 7-337 (355)
83 KOG2376 Signal recognition par 99.0 1.4E-06 3E-11 78.5 27.7 350 32-399 19-400 (652)
84 KOG0624 dsRNA-activated protei 99.0 1.3E-06 2.9E-11 73.5 25.9 315 74-406 44-372 (504)
85 KOG3081 Vesicle coat complex C 99.0 5.5E-07 1.2E-11 73.1 21.9 189 198-404 80-271 (299)
86 KOG4318 Bicoid mRNA stability 99.0 3.4E-08 7.3E-13 92.5 16.8 87 89-183 11-101 (1088)
87 KOG0548 Molecular co-chaperone 99.0 2.2E-06 4.9E-11 76.4 26.4 210 193-405 227-456 (539)
88 KOG3785 Uncharacterized conser 98.9 2E-06 4.4E-11 72.8 24.7 315 5-373 137-493 (557)
89 TIGR03302 OM_YfiO outer membra 98.9 1.3E-07 2.9E-12 79.9 17.7 169 223-405 30-233 (235)
90 KOG2376 Signal recognition par 98.9 2.4E-06 5.2E-11 77.0 25.5 364 2-400 25-516 (652)
91 TIGR03302 OM_YfiO outer membra 98.9 3.6E-07 7.8E-12 77.3 18.1 182 187-372 30-234 (235)
92 KOG0985 Vesicle coat protein c 98.9 9.3E-06 2E-10 77.7 28.3 235 23-285 982-1220(1666)
93 KOG1125 TPR repeat-containing 98.8 2.4E-07 5.2E-12 83.1 16.7 204 200-405 295-528 (579)
94 KOG3617 WD40 and TPR repeat-co 98.8 2.4E-06 5.2E-11 79.9 22.9 341 23-400 724-1170(1416)
95 PF12854 PPR_1: PPR repeat 98.8 5.6E-09 1.2E-13 57.5 3.7 33 98-130 2-34 (34)
96 PRK04841 transcriptional regul 98.8 1.9E-05 4.2E-10 80.7 31.3 205 192-405 533-761 (903)
97 KOG1156 N-terminal acetyltrans 98.8 1.5E-05 3.2E-10 72.8 26.1 368 27-407 10-437 (700)
98 KOG1125 TPR repeat-containing 98.8 4.8E-07 1E-11 81.2 15.9 253 76-361 293-562 (579)
99 PRK14720 transcript cleavage f 98.7 1E-06 2.2E-11 85.6 18.7 236 102-393 30-273 (906)
100 KOG3616 Selective LIM binding 98.7 8.1E-07 1.8E-11 82.0 16.9 307 9-400 593-933 (1636)
101 PF12854 PPR_1: PPR repeat 98.7 1.2E-08 2.6E-13 56.2 3.3 33 20-52 2-34 (34)
102 KOG2047 mRNA splicing factor [ 98.7 7.7E-05 1.7E-09 68.3 28.7 350 25-398 102-534 (835)
103 KOG0548 Molecular co-chaperone 98.7 1.4E-05 3E-10 71.5 23.3 346 33-405 10-422 (539)
104 KOG1128 Uncharacterized conser 98.7 1.6E-05 3.5E-10 73.7 24.3 224 74-351 404-633 (777)
105 KOG1070 rRNA processing protei 98.7 3.4E-06 7.4E-11 83.2 20.5 207 67-297 1457-1672(1710)
106 KOG0985 Vesicle coat protein c 98.7 0.0001 2.2E-09 71.0 28.7 106 46-161 968-1075(1666)
107 COG5010 TadD Flp pilus assembl 98.7 2.6E-06 5.5E-11 69.4 15.6 161 102-287 66-230 (257)
108 KOG1070 rRNA processing protei 98.6 2.4E-06 5.2E-11 84.2 18.1 205 188-408 1456-1667(1710)
109 PLN02789 farnesyltranstransfer 98.6 1.2E-05 2.7E-10 70.2 20.4 230 27-286 39-300 (320)
110 KOG1128 Uncharacterized conser 98.6 2.2E-06 4.8E-11 79.2 15.9 221 22-288 395-616 (777)
111 PRK10370 formate-dependent nit 98.6 4.3E-06 9.3E-11 68.0 16.0 125 238-377 51-180 (198)
112 PLN02789 farnesyltranstransfer 98.6 2.2E-05 4.8E-10 68.7 20.2 229 136-403 39-301 (320)
113 KOG3616 Selective LIM binding 98.5 6E-05 1.3E-09 70.1 23.2 276 75-373 739-1027(1636)
114 KOG1914 mRNA cleavage and poly 98.5 0.00056 1.2E-08 61.7 28.0 127 23-161 18-164 (656)
115 COG5010 TadD Flp pilus assembl 98.5 9.8E-06 2.1E-10 66.0 15.9 161 223-399 64-226 (257)
116 COG4783 Putative Zn-dependent 98.5 6.2E-05 1.4E-09 66.8 21.5 147 198-377 314-461 (484)
117 KOG4340 Uncharacterized conser 98.5 4.9E-06 1.1E-10 68.8 13.6 203 192-412 12-215 (459)
118 KOG2053 Mitochondrial inherita 98.5 0.0013 2.9E-08 62.9 34.1 211 35-258 19-258 (932)
119 PRK15359 type III secretion sy 98.5 4.3E-06 9.3E-11 64.3 12.6 109 262-385 27-136 (144)
120 PRK15179 Vi polysaccharide bio 98.5 2E-05 4.3E-10 76.0 19.7 142 223-379 83-226 (694)
121 PRK10370 formate-dependent nit 98.5 1.6E-05 3.5E-10 64.6 16.2 106 189-297 72-181 (198)
122 KOG0624 dsRNA-activated protei 98.5 0.00013 2.9E-09 61.8 21.3 264 102-405 37-337 (504)
123 PRK04841 transcriptional regul 98.5 0.00019 4.2E-09 73.5 27.5 319 29-373 413-763 (903)
124 PRK15179 Vi polysaccharide bio 98.5 1.9E-05 4.1E-10 76.2 18.6 144 187-348 83-229 (694)
125 PRK15359 type III secretion sy 98.4 2.3E-06 5E-11 65.8 9.9 93 314-406 30-123 (144)
126 PF09976 TPR_21: Tetratricopep 98.4 2.8E-05 6E-10 60.1 16.0 128 227-367 13-144 (145)
127 COG4783 Putative Zn-dependent 98.4 2.8E-05 6.1E-10 69.0 17.1 111 236-361 316-428 (484)
128 TIGR00756 PPR pentatricopeptid 98.4 5.6E-07 1.2E-11 50.3 4.4 35 260-294 1-35 (35)
129 KOG3617 WD40 and TPR repeat-co 98.4 2.6E-05 5.6E-10 73.3 17.2 229 67-333 725-992 (1416)
130 PF13812 PPR_3: Pentatricopept 98.4 7.6E-07 1.7E-11 49.4 4.3 33 260-292 2-34 (34)
131 KOG3081 Vesicle coat complex C 98.4 0.00018 3.8E-09 59.0 18.9 150 110-287 115-270 (299)
132 KOG4162 Predicted calmodulin-b 98.4 0.00029 6.3E-09 66.1 22.7 307 42-375 461-788 (799)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.1E-05 2.4E-10 71.9 12.0 121 264-402 174-295 (395)
134 KOG3060 Uncharacterized conser 98.3 7.1E-05 1.5E-09 60.7 15.1 191 201-406 23-222 (289)
135 KOG1127 TPR repeat-containing 98.3 0.00018 3.8E-09 69.4 19.9 169 41-219 474-659 (1238)
136 PRK14720 transcript cleavage f 98.3 0.00036 7.9E-09 68.5 22.7 226 67-352 30-268 (906)
137 TIGR02552 LcrH_SycD type III s 98.2 1.1E-05 2.3E-10 61.7 9.3 93 314-406 23-116 (135)
138 PF09976 TPR_21: Tetratricopep 98.2 8.1E-05 1.8E-09 57.5 14.1 129 25-160 12-144 (145)
139 TIGR02552 LcrH_SycD type III s 98.2 4E-05 8.6E-10 58.4 12.0 63 225-287 16-79 (135)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.7E-05 1.9E-09 66.4 15.1 120 230-366 173-293 (395)
141 KOG3060 Uncharacterized conser 98.2 0.00059 1.3E-08 55.6 18.0 183 82-288 26-220 (289)
142 cd00189 TPR Tetratricopeptide 98.1 1.8E-05 3.8E-10 55.8 8.5 93 313-405 5-98 (100)
143 PRK15363 pathogenicity island 98.1 2.3E-05 4.9E-10 59.5 8.8 92 314-405 41-133 (157)
144 PF13812 PPR_3: Pentatricopept 98.1 4.5E-06 9.7E-11 46.2 3.7 33 69-101 2-34 (34)
145 PF12895 Apc3: Anaphase-promot 98.1 2E-06 4.4E-11 59.3 2.7 79 321-400 2-83 (84)
146 TIGR00756 PPR pentatricopeptid 98.1 3.7E-06 8E-11 46.9 3.3 35 69-103 1-35 (35)
147 KOG1127 TPR repeat-containing 98.1 7.8E-05 1.7E-09 71.7 13.7 185 204-404 472-659 (1238)
148 PF01535 PPR: PPR repeat; Int 98.1 5.4E-06 1.2E-10 44.7 3.7 31 260-290 1-31 (31)
149 KOG1914 mRNA cleavage and poly 98.1 0.0064 1.4E-07 55.2 24.4 76 67-144 19-96 (656)
150 TIGR02795 tol_pal_ybgF tol-pal 98.1 4E-05 8.6E-10 56.9 9.5 95 313-407 7-108 (119)
151 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0001 2.2E-09 54.7 10.5 106 261-378 4-113 (119)
152 PRK10866 outer membrane biogen 98.0 0.0039 8.4E-08 52.6 20.6 56 347-402 181-239 (243)
153 KOG2041 WD40 repeat protein [G 98.0 0.0053 1.2E-07 57.4 22.1 324 23-389 690-1071(1189)
154 PF13414 TPR_11: TPR repeat; P 97.9 3.5E-05 7.6E-10 50.8 6.2 66 340-405 2-68 (69)
155 PF04840 Vps16_C: Vps16, C-ter 97.9 0.0079 1.7E-07 52.7 21.2 111 261-402 179-289 (319)
156 PF13432 TPR_16: Tetratricopep 97.9 3.4E-05 7.3E-10 50.2 5.2 59 347-405 3-61 (65)
157 PF12895 Apc3: Anaphase-promot 97.8 6.3E-05 1.4E-09 51.8 6.5 82 203-284 2-83 (84)
158 PF14938 SNAP: Soluble NSF att 97.8 0.0038 8.3E-08 54.2 18.6 135 192-337 116-266 (282)
159 PLN03088 SGT1, suppressor of 97.8 0.00062 1.3E-08 61.1 13.5 104 197-304 9-113 (356)
160 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.024 5.3E-07 50.5 28.4 365 5-403 25-530 (660)
161 KOG0550 Molecular chaperone (D 97.8 0.0011 2.4E-08 57.9 13.9 294 75-390 56-372 (486)
162 PRK15363 pathogenicity island 97.8 0.00085 1.8E-08 51.1 11.9 31 224-254 101-131 (157)
163 PLN03088 SGT1, suppressor of 97.8 0.00013 2.8E-09 65.4 8.9 92 315-406 9-101 (356)
164 cd00189 TPR Tetratricopeptide 97.8 0.00046 9.9E-09 48.3 10.2 94 193-288 3-97 (100)
165 KOG2041 WD40 repeat protein [G 97.8 0.0052 1.1E-07 57.4 18.8 244 100-385 689-967 (1189)
166 PF04840 Vps16_C: Vps16, C-ter 97.8 0.0084 1.8E-07 52.6 19.6 83 193-284 180-262 (319)
167 PF05843 Suf: Suppressor of fo 97.8 0.0011 2.3E-08 57.4 14.0 130 228-372 3-138 (280)
168 PF14559 TPR_19: Tetratricopep 97.7 4.5E-05 9.7E-10 50.1 4.2 56 352-407 2-57 (68)
169 PF01535 PPR: PPR repeat; Int 97.7 3.9E-05 8.4E-10 41.3 3.1 30 26-58 1-30 (31)
170 PF14559 TPR_19: Tetratricopep 97.7 0.0002 4.4E-09 46.9 7.1 62 202-265 3-64 (68)
171 COG4700 Uncharacterized protei 97.7 0.0054 1.2E-07 47.7 15.3 140 256-410 86-228 (251)
172 PF08579 RPM2: Mitochondrial r 97.7 0.00046 1E-08 48.8 8.7 79 29-115 29-116 (120)
173 COG3898 Uncharacterized membra 97.7 0.03 6.5E-07 49.0 28.2 307 4-404 68-392 (531)
174 PF05843 Suf: Suppressor of fo 97.7 0.0005 1.1E-08 59.4 10.9 128 25-162 1-135 (280)
175 PRK10803 tol-pal system protei 97.7 0.0003 6.4E-09 59.8 9.0 97 311-407 146-249 (263)
176 PF10037 MRP-S27: Mitochondria 97.7 0.00064 1.4E-08 61.3 11.3 121 187-307 63-186 (429)
177 PF07079 DUF1347: Protein of u 97.7 0.04 8.6E-07 49.2 27.0 381 2-403 19-523 (549)
178 PRK02603 photosystem I assembl 97.7 0.0014 3E-08 52.3 12.2 131 26-180 36-166 (172)
179 KOG2053 Mitochondrial inherita 97.6 0.0088 1.9E-07 57.5 18.9 230 145-407 20-258 (932)
180 PRK02603 photosystem I assembl 97.6 0.00042 9E-09 55.3 8.8 93 313-405 40-150 (172)
181 PF08579 RPM2: Mitochondrial r 97.6 0.0011 2.3E-08 47.0 9.4 72 233-304 32-114 (120)
182 PF10037 MRP-S27: Mitochondria 97.6 0.00056 1.2E-08 61.6 10.1 117 223-353 63-185 (429)
183 PF13371 TPR_9: Tetratricopept 97.6 0.00027 5.9E-09 47.1 6.4 59 349-407 3-61 (73)
184 CHL00033 ycf3 photosystem I as 97.6 0.0011 2.4E-08 52.7 10.9 84 24-114 34-117 (168)
185 PF13525 YfiO: Outer membrane 97.6 0.0053 1.2E-07 50.3 14.8 49 347-395 147-198 (203)
186 PRK10153 DNA-binding transcrip 97.5 0.003 6.6E-08 59.3 14.6 148 132-298 335-490 (517)
187 KOG1538 Uncharacterized conser 97.5 0.015 3.3E-07 54.0 18.1 274 21-371 552-847 (1081)
188 PRK10153 DNA-binding transcrip 97.5 0.0043 9.3E-08 58.4 15.2 140 222-375 333-487 (517)
189 PF13432 TPR_16: Tetratricopep 97.5 0.00062 1.3E-08 44.1 6.9 54 200-255 7-60 (65)
190 PF06239 ECSIT: Evolutionarily 97.5 0.0023 5.1E-08 51.2 10.8 85 202-306 64-150 (228)
191 COG4235 Cytochrome c biogenesi 97.5 0.00067 1.5E-08 57.0 8.1 103 311-413 159-265 (287)
192 KOG1130 Predicted G-alpha GTPa 97.4 0.00025 5.5E-09 61.7 5.7 246 33-287 25-343 (639)
193 PF14938 SNAP: Soluble NSF att 97.4 0.0045 9.8E-08 53.7 13.2 163 196-369 41-224 (282)
194 PRK15331 chaperone protein Sic 97.4 0.0012 2.6E-08 50.6 8.3 89 315-403 44-133 (165)
195 KOG0553 TPR repeat-containing 97.4 0.00046 1E-08 57.7 6.2 87 318-404 91-178 (304)
196 CHL00033 ycf3 photosystem I as 97.4 0.0017 3.6E-08 51.6 9.3 89 313-401 40-139 (168)
197 KOG0553 TPR repeat-containing 97.3 0.0028 6.1E-08 53.2 10.3 100 198-301 89-189 (304)
198 PF13414 TPR_11: TPR repeat; P 97.3 0.0015 3.1E-08 42.9 6.8 63 225-287 2-66 (69)
199 COG4105 ComL DNA uptake lipopr 97.3 0.066 1.4E-06 44.4 17.4 164 235-402 43-231 (254)
200 PF03704 BTAD: Bacterial trans 97.2 0.0095 2.1E-07 46.0 12.0 71 228-298 64-140 (146)
201 KOG2796 Uncharacterized conser 97.2 0.01 2.2E-07 48.9 12.0 44 223-266 283-326 (366)
202 PF12688 TPR_5: Tetratrico pep 97.2 0.0047 1E-07 45.3 9.0 104 73-176 6-117 (120)
203 PRK10803 tol-pal system protei 97.2 0.0056 1.2E-07 52.1 10.7 102 227-340 144-249 (263)
204 KOG2280 Vacuolar assembly/sort 97.2 0.24 5.3E-06 47.2 24.5 317 29-401 441-796 (829)
205 PF12688 TPR_5: Tetratrico pep 97.2 0.0034 7.4E-08 46.1 8.1 89 314-402 7-102 (120)
206 PF06239 ECSIT: Evolutionarily 97.1 0.0048 1E-07 49.5 9.2 102 21-130 43-166 (228)
207 KOG1130 Predicted G-alpha GTPa 97.1 0.0057 1.2E-07 53.6 10.3 280 77-371 26-345 (639)
208 KOG2796 Uncharacterized conser 97.1 0.007 1.5E-07 49.8 9.8 136 229-373 180-318 (366)
209 COG4235 Cytochrome c biogenesi 97.1 0.02 4.3E-07 48.5 12.8 114 186-303 152-269 (287)
210 PRK10866 outer membrane biogen 97.0 0.15 3.3E-06 43.1 18.0 90 193-287 147-240 (243)
211 COG4700 Uncharacterized protei 97.0 0.053 1.2E-06 42.4 13.5 128 187-331 86-216 (251)
212 PF13424 TPR_12: Tetratricopep 97.0 0.0017 3.8E-08 43.8 5.2 63 225-287 4-74 (78)
213 PF10300 DUF3808: Protein of u 97.0 0.03 6.5E-07 52.3 14.4 163 227-405 189-377 (468)
214 COG1729 Uncharacterized protei 96.9 0.0052 1.1E-07 51.2 8.1 90 318-407 151-247 (262)
215 PF13371 TPR_9: Tetratricopept 96.9 0.0075 1.6E-07 40.0 7.5 56 200-257 5-60 (73)
216 PF09205 DUF1955: Domain of un 96.8 0.11 2.5E-06 38.1 13.3 140 237-407 13-152 (161)
217 PF03704 BTAD: Bacterial trans 96.8 0.006 1.3E-07 47.1 7.2 69 342-410 63-136 (146)
218 KOG0550 Molecular chaperone (D 96.8 0.13 2.8E-06 45.5 15.4 322 32-403 56-422 (486)
219 PF13424 TPR_12: Tetratricopep 96.7 0.0042 9.1E-08 41.9 5.3 62 342-403 6-74 (78)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0084 1.8E-07 53.9 8.1 62 342-403 76-140 (453)
221 PF13428 TPR_14: Tetratricopep 96.7 0.0033 7.1E-08 36.9 3.8 42 342-383 2-43 (44)
222 smart00299 CLH Clathrin heavy 96.5 0.24 5.3E-06 37.7 14.2 128 27-177 9-137 (140)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.63 1.4E-05 41.9 23.0 91 310-401 399-492 (660)
224 PF12921 ATP13: Mitochondrial 96.5 0.034 7.5E-07 41.3 8.9 90 24-113 1-98 (126)
225 PF09613 HrpB1_HrpK: Bacterial 96.4 0.18 3.8E-06 38.8 12.5 112 200-330 20-131 (160)
226 PF13431 TPR_17: Tetratricopep 96.4 0.0024 5.2E-08 34.9 1.8 32 364-395 2-33 (34)
227 PRK15331 chaperone protein Sic 96.3 0.11 2.5E-06 40.0 11.1 89 197-287 44-133 (165)
228 KOG2610 Uncharacterized conser 96.3 0.15 3.3E-06 43.8 12.7 149 202-367 115-273 (491)
229 PF10300 DUF3808: Protein of u 96.3 0.26 5.7E-06 46.1 15.8 167 138-336 192-375 (468)
230 PF13525 YfiO: Outer membrane 96.3 0.49 1.1E-05 38.8 18.1 48 232-279 147-198 (203)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.028 6.1E-07 50.7 8.8 101 186-290 71-176 (453)
232 COG3898 Uncharacterized membra 96.1 0.87 1.9E-05 40.3 22.5 246 115-401 96-355 (531)
233 PF13512 TPR_18: Tetratricopep 96.1 0.15 3.2E-06 38.4 10.6 73 231-303 15-91 (142)
234 PF13281 DUF4071: Domain of un 96.0 0.89 1.9E-05 40.7 16.8 174 226-405 141-335 (374)
235 KOG0543 FKBP-type peptidyl-pro 96.0 0.16 3.4E-06 45.0 11.9 93 311-403 260-354 (397)
236 KOG0543 FKBP-type peptidyl-pro 96.0 0.023 5.1E-07 50.0 6.7 90 317-406 217-322 (397)
237 PF13512 TPR_18: Tetratricopep 96.0 0.11 2.3E-06 39.1 9.2 88 318-405 20-129 (142)
238 PF04053 Coatomer_WDAD: Coatom 95.9 0.69 1.5E-05 42.8 16.1 160 33-252 269-428 (443)
239 COG0457 NrfG FOG: TPR repeat [ 95.8 0.86 1.9E-05 37.6 20.3 204 190-405 59-266 (291)
240 COG3118 Thioredoxin domain-con 95.8 0.51 1.1E-05 40.1 13.4 149 235-398 143-295 (304)
241 PF10602 RPN7: 26S proteasome 95.7 0.43 9.2E-06 38.0 12.5 112 217-337 27-142 (177)
242 PF04053 Coatomer_WDAD: Coatom 95.7 0.62 1.3E-05 43.1 15.0 58 225-289 346-403 (443)
243 PF12921 ATP13: Mitochondrial 95.6 0.23 4.9E-06 36.9 9.7 47 257-303 50-97 (126)
244 KOG4555 TPR repeat-containing 95.6 0.064 1.4E-06 39.2 6.5 90 317-406 52-146 (175)
245 COG4649 Uncharacterized protei 95.6 0.39 8.4E-06 37.3 10.9 119 237-369 69-195 (221)
246 COG3118 Thioredoxin domain-con 95.6 1.3 2.8E-05 37.8 16.1 146 110-279 141-292 (304)
247 COG4785 NlpI Lipoprotein NlpI, 95.5 1 2.2E-05 36.5 13.8 179 204-405 79-267 (297)
248 KOG1538 Uncharacterized conser 95.4 1.8 3.9E-05 41.0 16.6 81 27-127 600-682 (1081)
249 COG1729 Uncharacterized protei 95.4 0.27 5.9E-06 41.2 10.4 100 25-131 142-243 (262)
250 smart00299 CLH Clathrin heavy 95.3 0.91 2E-05 34.5 15.2 84 195-285 12-95 (140)
251 KOG4555 TPR repeat-containing 95.2 0.58 1.3E-05 34.4 10.3 90 198-289 51-145 (175)
252 PF00637 Clathrin: Region in C 95.2 0.058 1.2E-06 41.4 5.8 125 73-205 12-140 (143)
253 PRK11619 lytic murein transgly 95.2 3.5 7.7E-05 40.4 29.0 283 89-402 84-373 (644)
254 KOG1258 mRNA processing protei 95.1 2.9 6.4E-05 39.3 27.5 103 272-389 379-489 (577)
255 PF08631 SPO22: Meiosis protei 95.0 1.9 4E-05 37.4 15.2 100 312-411 88-193 (278)
256 PF13428 TPR_14: Tetratricopep 95.0 0.079 1.7E-06 30.9 4.7 41 26-75 2-42 (44)
257 COG3629 DnrI DNA-binding trans 94.9 0.12 2.7E-06 43.9 7.3 60 344-403 156-215 (280)
258 PF07079 DUF1347: Protein of u 94.9 1.5 3.4E-05 39.6 14.0 227 144-373 16-330 (549)
259 KOG1941 Acetylcholine receptor 94.8 0.39 8.5E-06 41.9 9.8 229 115-369 18-274 (518)
260 PF04184 ST7: ST7 protein; In 94.8 0.34 7.4E-06 44.2 9.9 55 314-368 265-322 (539)
261 PRK11906 transcriptional regul 94.7 0.53 1.2E-05 42.8 11.1 141 260-405 252-402 (458)
262 KOG3941 Intermediate in Toll s 94.6 0.22 4.8E-06 41.8 7.9 103 21-131 63-187 (406)
263 KOG1585 Protein required for f 94.5 2.4 5.2E-05 35.1 14.7 93 263-365 154-251 (308)
264 PF09613 HrpB1_HrpK: Bacterial 94.5 1.7 3.8E-05 33.5 12.1 20 318-337 54-73 (160)
265 COG3629 DnrI DNA-binding trans 94.4 0.52 1.1E-05 40.2 9.8 75 225-299 152-232 (280)
266 PF13170 DUF4003: Protein of u 94.4 2.2 4.7E-05 37.2 13.9 122 275-410 78-217 (297)
267 KOG1920 IkappaB kinase complex 94.2 7.6 0.00016 39.9 26.1 153 147-335 893-1053(1265)
268 PF02259 FAT: FAT domain; Int 94.1 4.2 9.1E-05 36.6 17.9 181 197-405 5-214 (352)
269 COG2909 MalT ATP-dependent tra 94.0 7.1 0.00015 38.8 20.4 248 141-409 367-652 (894)
270 COG2976 Uncharacterized protei 93.9 1.2 2.6E-05 35.4 10.2 94 266-371 96-189 (207)
271 PF08631 SPO22: Meiosis protei 93.9 4 8.6E-05 35.4 20.9 103 191-295 85-193 (278)
272 COG3947 Response regulator con 93.8 1.9 4.1E-05 36.7 11.7 61 343-403 281-341 (361)
273 KOG1464 COP9 signalosome, subu 93.8 1.5 3.2E-05 36.8 11.0 153 117-287 41-219 (440)
274 COG0457 NrfG FOG: TPR repeat [ 93.8 3.2 6.9E-05 34.1 18.8 187 204-405 37-232 (291)
275 PF04184 ST7: ST7 protein; In 93.8 5.5 0.00012 36.8 16.5 98 263-373 263-378 (539)
276 PRK11906 transcriptional regul 93.7 5.6 0.00012 36.6 16.7 116 203-334 317-433 (458)
277 PF10602 RPN7: 26S proteasome 93.6 0.32 6.8E-06 38.8 6.8 92 311-402 39-140 (177)
278 KOG2280 Vacuolar assembly/sort 93.6 7.7 0.00017 37.7 29.0 360 15-402 329-771 (829)
279 PF07719 TPR_2: Tetratricopept 93.4 0.26 5.6E-06 26.5 4.4 29 344-372 4-32 (34)
280 PF13176 TPR_7: Tetratricopept 93.4 0.16 3.4E-06 28.1 3.5 26 377-402 1-26 (36)
281 PF13431 TPR_17: Tetratricopep 93.4 0.12 2.6E-06 28.1 2.9 25 222-246 9-33 (34)
282 TIGR02561 HrpB1_HrpK type III 93.3 2.8 6E-05 31.9 11.4 52 203-256 23-74 (153)
283 KOG0276 Vesicle coat complex C 93.2 2 4.4E-05 40.4 11.9 152 145-336 597-749 (794)
284 PF00515 TPR_1: Tetratricopept 93.2 0.28 6.1E-06 26.4 4.3 30 343-372 3-32 (34)
285 COG1747 Uncharacterized N-term 93.1 4.2 9.1E-05 37.6 13.5 185 186-385 62-249 (711)
286 KOG1585 Protein required for f 93.0 2.1 4.6E-05 35.4 10.5 88 311-399 153-251 (308)
287 PF13176 TPR_7: Tetratricopept 93.0 0.24 5.2E-06 27.3 3.8 23 229-251 2-24 (36)
288 KOG2610 Uncharacterized conser 92.9 6 0.00013 34.6 17.1 117 36-161 114-236 (491)
289 KOG1920 IkappaB kinase complex 92.9 13 0.00028 38.4 21.4 30 100-130 788-819 (1265)
290 KOG3941 Intermediate in Toll s 92.9 0.82 1.8E-05 38.6 8.2 110 245-356 53-173 (406)
291 PF00637 Clathrin: Region in C 92.8 0.23 4.9E-06 38.1 4.8 129 30-180 12-140 (143)
292 COG1747 Uncharacterized N-term 92.7 8.4 0.00018 35.8 17.1 62 189-254 98-159 (711)
293 PRK11619 lytic murein transgly 92.7 11 0.00024 37.1 30.8 48 350-399 416-463 (644)
294 PF00515 TPR_1: Tetratricopept 92.5 0.45 9.7E-06 25.6 4.6 28 228-255 3-30 (34)
295 PF04097 Nic96: Nup93/Nic96; 92.5 11 0.00025 36.8 18.3 45 102-147 111-158 (613)
296 PF13762 MNE1: Mitochondrial s 92.4 2.8 6.1E-05 31.9 9.8 98 16-116 28-128 (145)
297 PF13374 TPR_10: Tetratricopep 92.4 0.38 8.2E-06 27.3 4.3 36 25-60 2-37 (42)
298 PRK15180 Vi polysaccharide bio 92.3 1.4 3.1E-05 40.1 9.5 93 319-411 334-427 (831)
299 PF02259 FAT: FAT domain; Int 91.9 9 0.0002 34.4 17.9 194 74-288 4-213 (352)
300 PF13281 DUF4071: Domain of un 91.9 9.3 0.0002 34.4 23.4 79 67-145 140-228 (374)
301 KOG4234 TPR repeat-containing 91.9 0.46 1E-05 37.9 5.3 90 318-407 105-200 (271)
302 COG2976 Uncharacterized protei 91.8 4.3 9.4E-05 32.4 10.6 129 261-405 56-189 (207)
303 KOG1586 Protein required for f 91.6 3.5 7.7E-05 34.0 10.1 19 355-373 168-186 (288)
304 PF07719 TPR_2: Tetratricopept 91.6 0.67 1.4E-05 24.8 4.6 28 228-255 3-30 (34)
305 TIGR02561 HrpB1_HrpK type III 91.6 0.9 2E-05 34.4 6.4 70 319-390 21-93 (153)
306 KOG0890 Protein kinase of the 91.5 28 0.0006 39.0 20.6 137 73-214 1388-1542(2382)
307 COG4105 ComL DNA uptake lipopr 91.4 7.7 0.00017 32.6 21.5 62 232-295 173-238 (254)
308 PRK15180 Vi polysaccharide bio 91.3 12 0.00026 34.5 21.6 90 32-131 296-385 (831)
309 KOG1550 Extracellular protein 91.2 7.2 0.00016 37.7 13.8 179 206-407 228-429 (552)
310 KOG4648 Uncharacterized conser 91.0 0.49 1.1E-05 41.0 5.1 88 315-402 104-192 (536)
311 KOG2114 Vacuolar assembly/sort 90.9 18 0.00039 35.9 22.6 86 30-130 373-458 (933)
312 PRK09687 putative lyase; Provi 90.9 10 0.00022 32.9 23.4 25 346-371 240-264 (280)
313 COG5159 RPN6 26S proteasome re 90.9 3.1 6.7E-05 35.3 9.4 131 265-402 9-152 (421)
314 KOG4570 Uncharacterized conser 90.2 1.6 3.5E-05 37.5 7.4 98 223-336 61-163 (418)
315 PF13181 TPR_8: Tetratricopept 90.0 0.97 2.1E-05 24.2 4.2 30 343-372 3-32 (34)
316 PF09205 DUF1955: Domain of un 90.0 6.5 0.00014 29.3 12.9 65 226-290 86-151 (161)
317 KOG2066 Vacuolar assembly/sort 89.9 21 0.00046 35.1 18.8 138 113-254 366-533 (846)
318 PF13174 TPR_6: Tetratricopept 89.7 0.65 1.4E-05 24.6 3.4 26 379-404 4-29 (33)
319 PF07035 Mic1: Colon cancer-as 89.6 8.5 0.00018 30.2 14.9 37 213-250 17-53 (167)
320 KOG2066 Vacuolar assembly/sort 89.2 24 0.00051 34.8 20.6 74 75-150 363-439 (846)
321 PF13174 TPR_6: Tetratricopept 89.2 0.82 1.8E-05 24.2 3.5 29 345-373 4-32 (33)
322 COG4455 ImpE Protein of avirul 88.9 2.2 4.7E-05 34.7 6.8 75 192-268 3-81 (273)
323 PF07721 TPR_4: Tetratricopept 88.9 0.57 1.2E-05 23.5 2.5 23 377-399 3-25 (26)
324 KOG1498 26S proteasome regulat 88.6 18 0.00038 32.5 12.7 92 313-409 136-246 (439)
325 PF14669 Asp_Glu_race_2: Putat 88.6 11 0.00024 30.1 11.9 54 231-284 137-206 (233)
326 PF02284 COX5A: Cytochrome c o 88.6 4.6 9.9E-05 28.4 7.3 61 206-267 26-87 (108)
327 COG4785 NlpI Lipoprotein NlpI, 88.3 13 0.00028 30.5 15.1 165 190-374 99-270 (297)
328 KOG0686 COP9 signalosome, subu 88.2 18 0.00038 32.7 12.4 71 21-97 145-216 (466)
329 PF13374 TPR_10: Tetratricopep 88.1 1.3 2.8E-05 24.9 4.1 28 227-254 3-30 (42)
330 KOG0687 26S proteasome regulat 88.1 17 0.00037 31.7 13.4 137 187-337 67-210 (393)
331 PF04910 Tcf25: Transcriptiona 88.1 9.4 0.0002 34.5 11.3 127 274-403 9-167 (360)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 88.1 4.9 0.00011 28.0 7.1 62 205-267 22-84 (103)
333 PF11207 DUF2989: Protein of u 87.7 7.9 0.00017 31.3 9.3 75 203-279 119-198 (203)
334 PF13929 mRNA_stabil: mRNA sta 87.6 6.8 0.00015 33.6 9.4 116 6-128 145-263 (292)
335 PF07035 Mic1: Colon cancer-as 87.4 12 0.00027 29.3 13.7 43 88-130 14-56 (167)
336 PF13181 TPR_8: Tetratricopept 87.1 1.8 3.8E-05 23.1 4.0 27 228-254 3-29 (34)
337 PF13929 mRNA_stabil: mRNA sta 87.0 12 0.00025 32.2 10.4 141 8-160 115-264 (292)
338 KOG4234 TPR repeat-containing 86.5 12 0.00027 30.1 9.6 107 267-383 103-210 (271)
339 PF07721 TPR_4: Tetratricopept 85.9 1.6 3.5E-05 21.8 3.1 21 230-250 5-25 (26)
340 KOG1941 Acetylcholine receptor 85.8 25 0.00055 31.3 17.5 234 2-254 19-274 (518)
341 PF11207 DUF2989: Protein of u 85.7 7.6 0.00016 31.4 8.2 75 6-87 123-197 (203)
342 KOG2396 HAT (Half-A-TPR) repea 85.5 32 0.00068 32.1 18.7 92 194-287 464-558 (568)
343 COG4455 ImpE Protein of avirul 85.2 2.3 5E-05 34.6 5.1 74 312-385 5-82 (273)
344 PF11846 DUF3366: Domain of un 85.2 2.5 5.4E-05 34.3 5.7 51 2-52 121-171 (193)
345 PRK09687 putative lyase; Provi 85.1 25 0.00053 30.6 24.1 233 23-306 35-279 (280)
346 KOG4570 Uncharacterized conser 85.0 3.7 8E-05 35.4 6.5 101 23-130 62-162 (418)
347 KOG0403 Neoplastic transformat 84.8 32 0.00069 31.6 18.9 91 312-405 513-612 (645)
348 TIGR03504 FimV_Cterm FimV C-te 84.2 1.7 3.7E-05 25.2 3.1 26 380-405 4-29 (44)
349 COG4649 Uncharacterized protei 84.0 19 0.00041 28.4 13.8 54 201-255 143-196 (221)
350 PF08311 Mad3_BUB1_I: Mad3/BUB 83.8 9.1 0.0002 28.5 7.6 73 325-400 50-124 (126)
351 KOG0991 Replication factor C, 83.3 25 0.00055 29.3 13.6 68 318-386 202-283 (333)
352 PF02284 COX5A: Cytochrome c o 83.1 5.2 0.00011 28.1 5.5 47 338-384 42-88 (108)
353 TIGR02508 type_III_yscG type I 82.9 14 0.0003 26.0 8.2 53 317-373 48-100 (115)
354 PF10579 Rapsyn_N: Rapsyn N-te 82.6 2.5 5.4E-05 28.1 3.6 45 353-397 18-65 (80)
355 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 11 0.00023 26.4 6.7 50 56-111 35-84 (103)
356 KOG1550 Extracellular protein 82.2 51 0.0011 32.0 21.0 152 4-164 227-394 (552)
357 PF13170 DUF4003: Protein of u 81.9 35 0.00076 29.9 15.0 47 85-131 79-131 (297)
358 COG5187 RPN7 26S proteasome re 81.1 35 0.00076 29.4 12.7 138 186-337 77-221 (412)
359 KOG0890 Protein kinase of the 80.8 1.1E+02 0.0023 34.9 23.4 107 259-382 1670-1796(2382)
360 COG3947 Response regulator con 80.7 37 0.00079 29.4 13.3 142 42-215 150-338 (361)
361 smart00028 TPR Tetratricopepti 80.6 3.4 7.4E-05 20.8 3.5 25 378-402 4-28 (34)
362 PF07163 Pex26: Pex26 protein; 80.5 36 0.00078 29.2 10.5 87 195-282 88-181 (309)
363 TIGR02508 type_III_yscG type I 80.2 18 0.00039 25.5 9.0 78 83-163 20-97 (115)
364 KOG4521 Nuclear pore complex, 80.2 81 0.0017 33.0 15.5 157 230-397 924-1124(1480)
365 PF06552 TOM20_plant: Plant sp 80.0 22 0.00049 28.2 8.6 94 206-303 7-122 (186)
366 PF04097 Nic96: Nup93/Nic96; 79.6 27 0.00058 34.3 11.2 97 233-339 421-535 (613)
367 KOG4642 Chaperone-dependent E3 79.2 5.5 0.00012 33.0 5.3 87 319-405 21-108 (284)
368 KOG1308 Hsp70-interacting prot 79.0 1.9 4.1E-05 37.6 2.8 90 319-408 125-215 (377)
369 PF14689 SPOB_a: Sensor_kinase 78.9 5.9 0.00013 25.1 4.4 46 242-287 6-51 (62)
370 KOG4642 Chaperone-dependent E3 78.6 20 0.00043 29.9 8.2 57 240-298 24-81 (284)
371 PRK10941 hypothetical protein; 78.2 13 0.00029 31.8 7.7 62 344-405 184-245 (269)
372 PF10366 Vps39_1: Vacuolar sor 77.3 23 0.0005 25.5 7.6 27 261-287 41-67 (108)
373 COG0790 FOG: TPR repeat, SEL1 77.2 49 0.0011 28.8 15.5 183 202-407 53-269 (292)
374 TIGR03504 FimV_Cterm FimV C-te 77.0 5.3 0.00012 23.2 3.5 23 265-287 5-27 (44)
375 PF08311 Mad3_BUB1_I: Mad3/BUB 76.7 22 0.00048 26.4 7.7 44 208-251 81-124 (126)
376 cd00280 TRFH Telomeric Repeat 76.4 37 0.00081 27.1 12.3 91 242-335 85-184 (200)
377 COG5159 RPN6 26S proteasome re 74.9 54 0.0012 28.2 10.2 127 196-331 9-148 (421)
378 PF10345 Cohesin_load: Cohesin 74.7 91 0.002 30.7 32.7 121 5-130 115-252 (608)
379 PF13762 MNE1: Mitochondrial s 74.2 37 0.0008 26.0 10.8 79 229-307 42-128 (145)
380 KOG3364 Membrane protein invol 73.6 22 0.00048 26.7 6.6 65 339-403 30-99 (149)
381 PF09477 Type_III_YscG: Bacter 73.1 31 0.00068 24.7 9.9 80 82-164 20-99 (116)
382 KOG2114 Vacuolar assembly/sort 72.5 1.1E+02 0.0024 30.8 26.9 169 26-216 335-516 (933)
383 KOG2659 LisH motif-containing 72.4 28 0.00061 28.8 7.7 52 110-161 71-130 (228)
384 smart00386 HAT HAT (Half-A-TPR 72.3 7.9 0.00017 20.0 3.4 29 355-383 1-29 (33)
385 KOG0276 Vesicle coat complex C 72.2 49 0.0011 31.8 10.0 129 106-251 617-746 (794)
386 PF14853 Fis1_TPR_C: Fis1 C-te 72.0 7.3 0.00016 23.7 3.4 32 346-377 6-37 (53)
387 PF12862 Apc5: Anaphase-promot 71.9 18 0.00038 25.2 5.8 53 352-404 9-70 (94)
388 smart00777 Mad3_BUB1_I Mad3/BU 71.7 36 0.00077 25.3 7.5 69 325-399 50-123 (125)
389 PF10579 Rapsyn_N: Rapsyn N-te 71.3 24 0.00051 23.6 5.7 48 271-330 18-65 (80)
390 KOG0545 Aryl-hydrocarbon recep 70.8 13 0.00027 31.1 5.4 88 318-405 188-294 (329)
391 PF14561 TPR_20: Tetratricopep 70.8 13 0.00029 25.6 4.9 53 340-392 21-75 (90)
392 KOG2063 Vacuolar assembly/sort 69.2 1.4E+02 0.0031 30.6 13.2 173 227-402 505-711 (877)
393 PF10366 Vps39_1: Vacuolar sor 68.5 9 0.0002 27.6 3.8 29 375-403 39-67 (108)
394 KOG4648 Uncharacterized conser 68.2 44 0.00096 29.6 8.3 97 198-298 105-202 (536)
395 PF11848 DUF3368: Domain of un 68.2 21 0.00045 21.2 4.7 36 267-302 10-45 (48)
396 cd08819 CARD_MDA5_2 Caspase ac 67.8 36 0.00079 23.3 6.3 66 87-154 21-86 (88)
397 PF12862 Apc5: Anaphase-promot 67.1 26 0.00057 24.3 5.9 57 35-96 8-69 (94)
398 KOG0376 Serine-threonine phosp 66.9 4.5 9.8E-05 37.0 2.4 88 316-403 12-100 (476)
399 PF09477 Type_III_YscG: Bacter 66.8 45 0.00097 23.9 7.8 88 203-297 19-106 (116)
400 PF04190 DUF410: Protein of un 66.5 84 0.0018 27.0 13.1 82 132-218 88-169 (260)
401 KOG1463 26S proteasome regulat 65.8 89 0.0019 27.8 9.6 127 270-403 15-156 (411)
402 PF10255 Paf67: RNA polymerase 65.2 52 0.0011 30.2 8.7 59 344-402 125-191 (404)
403 KOG0686 COP9 signalosome, subu 65.0 1.1E+02 0.0024 27.9 13.5 63 226-288 150-216 (466)
404 KOG2063 Vacuolar assembly/sort 64.0 1.8E+02 0.0039 29.9 19.2 78 8-97 494-573 (877)
405 PF07163 Pex26: Pex26 protein; 63.9 73 0.0016 27.4 8.6 84 315-398 90-181 (309)
406 PRK10564 maltose regulon perip 63.9 15 0.00033 31.7 4.8 37 21-60 252-289 (303)
407 cd00280 TRFH Telomeric Repeat 63.2 77 0.0017 25.4 10.8 72 275-356 85-158 (200)
408 PF11817 Foie-gras_1: Foie gra 62.8 49 0.0011 28.1 7.8 60 226-285 178-244 (247)
409 COG4976 Predicted methyltransf 62.3 15 0.00034 30.3 4.3 57 319-375 6-63 (287)
410 PF11817 Foie-gras_1: Foie gra 62.3 36 0.00078 28.9 6.9 78 325-402 162-245 (247)
411 PF11846 DUF3366: Domain of un 62.1 40 0.00086 27.3 7.0 32 100-131 141-172 (193)
412 PRK10564 maltose regulon perip 62.0 16 0.00035 31.6 4.6 43 257-299 254-297 (303)
413 KOG1464 COP9 signalosome, subu 61.8 1E+02 0.0022 26.4 18.5 252 80-364 39-326 (440)
414 KOG2659 LisH motif-containing 61.7 93 0.002 25.8 10.1 18 317-334 73-90 (228)
415 KOG0403 Neoplastic transformat 61.5 68 0.0015 29.6 8.5 72 108-179 514-588 (645)
416 PRK13800 putative oxidoreducta 61.5 2.1E+02 0.0046 29.9 23.0 251 121-403 622-880 (897)
417 KOG2471 TPR repeat-containing 61.2 1.5E+02 0.0032 28.0 14.1 112 35-147 250-382 (696)
418 PF06552 TOM20_plant: Plant sp 60.5 42 0.0009 26.7 6.3 76 206-289 51-137 (186)
419 KOG4077 Cytochrome c oxidase, 60.0 69 0.0015 23.8 6.9 48 207-255 66-113 (149)
420 PRK13800 putative oxidoreducta 59.4 2.3E+02 0.005 29.6 25.5 77 225-306 788-864 (897)
421 KOG0545 Aryl-hydrocarbon recep 58.7 96 0.0021 26.2 8.2 60 228-287 232-292 (329)
422 PF09670 Cas_Cas02710: CRISPR- 57.7 1.5E+02 0.0033 27.1 10.9 58 268-336 140-197 (379)
423 PF14561 TPR_20: Tetratricopep 57.5 61 0.0013 22.4 6.6 44 362-405 9-52 (90)
424 PF15469 Sec5: Exocyst complex 57.5 43 0.00093 26.8 6.3 25 390-414 154-178 (182)
425 KOG4507 Uncharacterized conser 57.0 1.2E+02 0.0025 29.4 9.4 127 243-385 590-720 (886)
426 smart00777 Mad3_BUB1_I Mad3/BU 56.9 29 0.00063 25.7 4.7 42 209-250 82-123 (125)
427 PRK10941 hypothetical protein; 56.2 1.3E+02 0.0029 25.9 9.9 75 28-111 184-259 (269)
428 KOG2908 26S proteasome regulat 56.0 1.5E+02 0.0032 26.4 11.3 68 32-104 82-156 (380)
429 PF11848 DUF3368: Domain of un 55.8 41 0.00089 19.9 4.6 35 77-111 11-45 (48)
430 PF14689 SPOB_a: Sensor_kinase 55.2 51 0.0011 20.8 5.1 45 5-52 6-50 (62)
431 COG2178 Predicted RNA-binding 55.1 1.1E+02 0.0024 24.7 8.1 86 318-403 39-149 (204)
432 PF11663 Toxin_YhaV: Toxin wit 54.8 22 0.00048 26.6 3.7 32 80-113 107-138 (140)
433 PF04762 IKI3: IKI3 family; I 54.8 2.8E+02 0.006 29.1 15.6 49 240-288 792-843 (928)
434 PF03745 DUF309: Domain of unk 54.7 53 0.0011 20.8 5.9 54 269-331 9-62 (62)
435 COG2909 MalT ATP-dependent tra 54.3 2.6E+02 0.0056 28.6 22.9 221 114-366 426-684 (894)
436 PF13934 ELYS: Nuclear pore co 53.8 1.3E+02 0.0029 25.1 14.1 101 69-175 77-182 (226)
437 KOG0551 Hsp90 co-chaperone CNS 53.6 32 0.00069 30.3 5.0 87 316-402 89-180 (390)
438 PF11768 DUF3312: Protein of u 53.6 2.1E+02 0.0046 27.4 10.8 103 228-336 410-522 (545)
439 PF09986 DUF2225: Uncharacteri 53.5 66 0.0014 26.6 6.9 66 343-408 120-198 (214)
440 TIGR02710 CRISPR-associated pr 53.0 1.8E+02 0.004 26.5 12.1 63 265-335 136-198 (380)
441 PF10155 DUF2363: Uncharacteri 52.8 94 0.002 23.1 11.1 112 2-129 2-124 (126)
442 KOG4507 Uncharacterized conser 52.7 79 0.0017 30.4 7.7 132 22-162 568-704 (886)
443 KOG2908 26S proteasome regulat 52.4 1.7E+02 0.0037 26.0 10.3 69 227-295 76-156 (380)
444 cd08819 CARD_MDA5_2 Caspase ac 51.4 75 0.0016 21.8 5.5 67 44-124 21-87 (88)
445 PF11838 ERAP1_C: ERAP1-like C 51.2 1.7E+02 0.0038 25.7 10.8 112 6-128 147-262 (324)
446 KOG2034 Vacuolar sorting prote 51.2 2.9E+02 0.0062 28.3 16.1 177 196-401 364-556 (911)
447 KOG3807 Predicted membrane pro 51.2 1.8E+02 0.0038 25.8 9.1 54 199-252 284-337 (556)
448 KOG0376 Serine-threonine phosp 51.2 30 0.00065 32.0 4.8 105 197-305 11-116 (476)
449 KOG3364 Membrane protein invol 50.8 58 0.0012 24.6 5.3 21 267-287 79-99 (149)
450 COG5187 RPN7 26S proteasome re 49.9 1.3E+02 0.0029 26.0 7.9 20 313-332 120-139 (412)
451 TIGR02270 conserved hypothetic 49.8 2.2E+02 0.0047 26.5 24.0 218 75-309 45-267 (410)
452 KOG2300 Uncharacterized conser 49.6 2.3E+02 0.005 26.7 18.9 254 11-333 264-552 (629)
453 PRK13184 pknD serine/threonine 49.3 3.4E+02 0.0073 28.5 23.3 314 29-368 479-867 (932)
454 PF12926 MOZART2: Mitotic-spin 49.1 59 0.0013 22.2 4.7 62 67-130 9-70 (88)
455 PF08424 NRDE-2: NRDE-2, neces 49.0 1.9E+02 0.0042 25.7 15.5 120 275-409 47-188 (321)
456 PF11123 DNA_Packaging_2: DNA 48.8 62 0.0014 21.2 4.5 32 241-272 12-44 (82)
457 PF13934 ELYS: Nuclear pore co 48.1 1.6E+02 0.0036 24.6 11.4 103 229-354 79-185 (226)
458 KOG4077 Cytochrome c oxidase, 47.7 52 0.0011 24.4 4.6 45 338-382 81-125 (149)
459 PF09454 Vps23_core: Vps23 cor 47.7 43 0.00093 21.5 3.8 56 339-394 6-61 (65)
460 KOG0687 26S proteasome regulat 47.6 2E+02 0.0044 25.5 13.3 112 260-382 105-223 (393)
461 KOG0292 Vesicle coat complex C 47.5 3.3E+02 0.0072 28.0 13.6 177 147-371 606-783 (1202)
462 COG2178 Predicted RNA-binding 47.4 1.5E+02 0.0033 24.0 9.5 65 230-295 33-104 (204)
463 PF14669 Asp_Glu_race_2: Putat 47.3 59 0.0013 26.2 5.2 98 153-250 95-205 (233)
464 KOG2581 26S proteasome regulat 47.1 2.1E+02 0.0045 26.3 9.0 62 310-373 211-279 (493)
465 PF08424 NRDE-2: NRDE-2, neces 46.9 2.1E+02 0.0046 25.5 14.1 123 206-337 47-183 (321)
466 KOG2422 Uncharacterized conser 46.7 2.8E+02 0.0061 26.8 13.7 158 202-372 250-450 (665)
467 TIGR03581 EF_0839 conserved hy 46.2 1E+02 0.0022 25.4 6.4 80 323-402 136-235 (236)
468 PRK12798 chemotaxis protein; R 45.2 2.5E+02 0.0055 25.9 16.7 180 211-403 98-285 (421)
469 KOG4567 GTPase-activating prot 44.8 1.2E+02 0.0025 26.7 6.9 70 279-365 263-342 (370)
470 KOG2396 HAT (Half-A-TPR) repea 44.2 2.9E+02 0.0062 26.3 30.2 89 312-400 464-555 (568)
471 KOG1586 Protein required for f 44.2 2E+02 0.0042 24.3 12.7 16 387-402 166-181 (288)
472 COG0735 Fur Fe2+/Zn2+ uptake r 43.7 1.5E+02 0.0032 22.7 7.9 58 56-119 14-71 (145)
473 KOG4279 Serine/threonine prote 43.7 3.4E+02 0.0074 27.3 10.4 178 186-376 197-401 (1226)
474 PF07575 Nucleopor_Nup85: Nup8 43.4 3E+02 0.0064 27.0 10.6 31 271-301 507-537 (566)
475 cd08326 CARD_CASP9 Caspase act 42.9 1.1E+02 0.0023 20.9 5.9 40 319-360 41-80 (84)
476 KOG0292 Vesicle coat complex C 42.8 2.6E+02 0.0056 28.7 9.7 133 236-407 653-785 (1202)
477 KOG4567 GTPase-activating prot 42.5 2.4E+02 0.0052 24.9 9.7 80 88-168 263-352 (370)
478 PRK06645 DNA polymerase III su 41.7 2.8E+02 0.006 26.7 9.8 93 4-102 188-291 (507)
479 COG5108 RPO41 Mitochondrial DN 41.7 1.2E+02 0.0026 29.7 7.2 75 30-113 33-113 (1117)
480 PF05944 Phage_term_smal: Phag 40.6 93 0.002 23.4 5.3 40 339-379 47-86 (132)
481 PF04090 RNA_pol_I_TF: RNA pol 40.6 2E+02 0.0044 23.5 9.4 61 226-286 41-103 (199)
482 PRK09857 putative transposase; 40.6 1.3E+02 0.0028 26.3 7.0 64 344-407 209-272 (292)
483 KOG2471 TPR repeat-containing 40.3 3.3E+02 0.0072 25.8 10.0 42 201-243 28-69 (696)
484 PF09797 NatB_MDM20: N-acetylt 40.2 2.9E+02 0.0062 25.1 17.3 273 70-365 3-310 (365)
485 COG5108 RPO41 Mitochondrial DN 40.2 1.5E+02 0.0033 29.1 7.6 91 195-286 33-130 (1117)
486 smart00544 MA3 Domain in DAP-5 39.9 1.4E+02 0.003 21.4 8.0 61 28-98 5-67 (113)
487 PF14853 Fis1_TPR_C: Fis1 C-te 39.9 87 0.0019 19.1 4.8 27 232-258 7-33 (53)
488 PRK12356 glutaminase; Reviewed 39.7 2.7E+02 0.0059 24.7 10.4 45 154-198 86-131 (319)
489 PF09454 Vps23_core: Vps23 cor 39.4 48 0.001 21.2 3.1 51 21-80 4-54 (65)
490 PF10255 Paf67: RNA polymerase 39.1 3.2E+02 0.0069 25.3 13.3 57 312-368 126-191 (404)
491 smart00843 Ftsk_gamma This dom 38.8 88 0.0019 19.9 4.1 30 380-410 23-52 (63)
492 PF15297 CKAP2_C: Cytoskeleton 38.7 1.3E+02 0.0029 26.8 6.6 53 323-375 118-174 (353)
493 PF10475 DUF2450: Protein of u 38.4 1.2E+02 0.0026 26.5 6.5 22 163-184 195-216 (291)
494 PF04090 RNA_pol_I_TF: RNA pol 38.1 2E+02 0.0043 23.5 7.1 62 25-94 41-102 (199)
495 COG4715 Uncharacterized conser 37.9 3.8E+02 0.0082 25.8 20.4 116 136-277 305-423 (587)
496 PF11768 DUF3312: Protein of u 37.7 3.1E+02 0.0067 26.4 9.1 95 310-404 410-523 (545)
497 cd07153 Fur_like Ferric uptake 37.3 1.3E+02 0.0028 21.6 5.8 49 73-121 5-53 (116)
498 KOG3824 Huntingtin interacting 37.3 60 0.0013 28.3 4.2 60 318-377 126-186 (472)
499 PF00244 14-3-3: 14-3-3 protei 37.2 2.5E+02 0.0055 23.6 9.2 60 195-255 6-66 (236)
500 PRK08691 DNA polymerase III su 36.8 3.9E+02 0.0084 26.9 10.0 92 5-102 180-279 (709)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-63 Score=482.08 Aligned_cols=401 Identities=24% Similarity=0.405 Sum_probs=333.4
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+.+..|.++|.++...+++.||..+|+.++.+|++.++++.|.+++..|. ..|+. | |..+|+.++..|++.|
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~---~~g~~--~---~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE---SSGFE--P---DQYMMNRVLLMHVKCG 172 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCC--c---chHHHHHHHHHHhcCC
Confidence 44555555555555544455555555555555555555555555555555 55555 4 5555555555555555
Q ss_pred CCchHHHHHHHH-------------------------------HHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC-
Q 039757 83 YPNLGTQLHAVI-------------------------------SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP- 130 (415)
Q Consensus 83 ~~~~a~~~~~~~-------------------------------~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~- 130 (415)
+++.|.++|+.| .+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 555555555554 444444444444444444444444444444443333
Q ss_pred ---CCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc----------CCCchHHHHhHH
Q 039757 131 ---ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVL 197 (415)
Q Consensus 131 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~----------~~~~~~~~~~ll 197 (415)
.+|..+||+||.+|++.|++++|.++|++|.++|+++||++|.+|++.|+.++|. ..||..||+.++
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2567788999999999999999999999999999999999999999999999998 789999999999
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHH
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 277 (415)
.+|++.|+++.|.+++..|.+.|..| +..+|++|+++|++.|++++|.++|++|.+ ||..+||+||.+|+++|+.++
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999776 999999999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHccCCc----------------------chHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------------~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
|.++|++|.+.|+.||..||+.++.+|++.|. +|+.++++|++.|++++|.+++++|.
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999987 79999999999999999999999998
Q ss_pred CCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCCCCC
Q 039757 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415 (415)
Q Consensus 336 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 415 (415)
.. |+..+|++|+.+|...|+++.|..+++++.+.+|.+..+|..|+.+|++.|++++|.+++++|.+.|+++.||||||
T Consensus 490 ~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 490 FK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 76 99999999999999999999999999999999998999999999999999999999999999999999999999996
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-60 Score=474.36 Aligned_cols=395 Identities=29% Similarity=0.502 Sum_probs=373.4
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.++++|..+.+.| +.||+.+||.+|.+|++.|++++|.++|+.|. . | |..+|+++|.+|++.|
T Consensus 302 g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~--~---d~~s~n~li~~~~~~g 368 (857)
T PLN03077 302 GDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-------T--K---DAVSWTAMISGYEKNG 368 (857)
T ss_pred CChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--C---CeeeHHHHHHHHHhCC
Confidence 46677788888887777 78888888888888999999999999998886 2 5 8889999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
++++|.++|+.|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+ ++..+||+||.+|++.|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998874 788999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHH
Q 039757 159 EMPCRNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229 (415)
Q Consensus 159 ~m~~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (415)
+|.++|+.+|+++|.+|++.|+.++|. ..||..||+.++.+|++.|+.+.+.+++..+.+.|+.+ +..++
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~ 527 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-DGFLP 527 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceec
Confidence 999999999999999999999998887 68999999999999999999999999999999999877 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
++|+++|+++|++++|.++|+++ . +|..+||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-~--~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-E--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 99999999999999999999999 3 99999999999999999999999999999999999999999999999999987
Q ss_pred ----------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 310 ----------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
+|++++++|++.|++++|.+++++|... |+..+|++|+.+|...|+.+.+....+++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8999999999999999999999999765 99999999999999999999999999999
Q ss_pred HHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCCCCC
Q 039757 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415 (415)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 415 (415)
.+..|.+...|..|...|...|+|++|.++.+.|.+.|+++.||||||
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999999999999999999999999999996
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-57 Score=453.11 Aligned_cols=386 Identities=24% Similarity=0.365 Sum_probs=358.8
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
+...++++|..+.+.| +.||+.+||.+|.+|++.|+++.|.++|++|. . | |..+||++|.+|++.|+
T Consensus 202 ~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~--~---d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 202 DLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMP-------R--R---DCISWNAMISGYFENGE 268 (857)
T ss_pred chhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-------C--C---CcchhHHHHHHHHhCCC
Confidence 4455666666666665 67777788888889999999999999999986 2 5 88999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
+++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+ ||..+||+||.+|++.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999875 8999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCCcc----------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHH
Q 039757 160 MPCRNVVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229 (415)
Q Consensus 160 m~~~~~~~~~~li~~~~~~~~~~~a~----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (415)
|..||+.+|+++|.+|++.|++++|. ..||..||+.++.+|++.|+++.+.++++.+.+.|..| +..+|
T Consensus 349 m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~ 427 (857)
T PLN03077 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVA 427 (857)
T ss_pred CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHH
Confidence 99999999999999999999999988 78999999999999999999999999999999999877 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
++||++|++.|++++|.++|++|.+ +|..+||.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999999988 8999999999999999999999999999986 599999999999999999886
Q ss_pred ---------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 310 ---------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
.+++|+++|+++|++++|.++|+++ . ||..+|+++|.+|++.|+.++|.++|++|.
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~-~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--E-KDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6789999999999999999999998 3 799999999999999999999999999999
Q ss_pred HcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHh-hhccccC
Q 039757 369 EMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMD-ERNALKF 409 (415)
Q Consensus 369 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~ 409 (415)
+.+.. |..+|..++.+|.+.|++++|.++|++|. +.|+.|+
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 88854 88999999999999999999999999998 6788775
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-57 Score=443.73 Aligned_cols=381 Identities=15% Similarity=0.167 Sum_probs=359.8
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+++..|.++|++|.+.|.+.|+..+++.++.+|.+.|..++|+.+|+.|. . | |..+|+.++.+|++.|
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~--p---d~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------N--P---TLSTFNMLMSVCASSQ 451 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------C--C---CHHHHHHHHHHHHhCc
Confidence 67889999999999999788999999999999999999999999999986 2 6 9999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 899999999999999999999999999
Q ss_pred hCC----CCChhHHHHHHHHHHhccCCCCcc------------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 159 EMP----CRNVVSWTGILDGYTRMNRSNGAS------------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 159 ~m~----~~~~~~~~~li~~~~~~~~~~~a~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+|. .||..+|+.+|.+|++.|++++|. ..||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 996 589999999999999999998887 4789999999999999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
| +..+|+.+|.+|++.|++++|.++|++|... .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 612 p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns- 689 (1060)
T PLN03218 612 G-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS- 689 (1060)
T ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence 7 9999999999999999999999999999988 58999999999999999999999999999999999999999887
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CCcc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG-NGGD 377 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 377 (415)
||.+|++.|++++|.++|++|... .|+..+|+.||.+|++.|++++|.++|++|.+.+.. +..+
T Consensus 690 -------------LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 690 -------------LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred -------------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 666699999999999999999754 799999999999999999999999999999988754 8899
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 378 YVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 378 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
|..++.+|++.|++++|.+++++|.+.|+.|++
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999998764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-56 Score=438.00 Aligned_cols=380 Identities=16% Similarity=0.161 Sum_probs=354.1
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+....|..+|..|.. ||..+|+.+|.+|++.|+++.|.++|+.|. ..|+. | |..+|+.+|.+|++.|
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~---~~Gl~--p---D~~tynsLI~~y~k~G 486 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQ---EAGLK--A---DCKLYTTLISTCAKSG 486 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHHhCc
Confidence 456778888877753 999999999999999999999999999999 99999 9 9999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 899999999999999999999999999
Q ss_pred hCC------CCChhHHHHHHHHHHhccCCCCcc----------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 159 EMP------CRNVVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 159 ~m~------~~~~~~~~~li~~~~~~~~~~~a~----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+|. .||..+|+++|.+|++.|++++|. ..|+..+|+.++.+|++.|++++|..+|++|.+.|+.
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 995 489999999999999999999888 6889999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
| |..+|+.++.+|++.|++++|.++|++|.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 647 P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~- 724 (1060)
T PLN03218 647 P-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA- 724 (1060)
T ss_pred C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence 7 9999999999999999999999999999987 58999999999999999999999999999999999999999888
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CCcc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG-NGGD 377 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 377 (415)
||.+|++.|++++|.++|++|... .||..+|+.++.+|++.|++++|.+++++|.+.+.. +..+
T Consensus 725 -------------LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 725 -------------LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred -------------HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 566689999999999999999766 899999999999999999999999999999999876 7788
Q ss_pred HHHHHHHHHh----c-------------------CchhhHHHHHHHHhhhccccCC
Q 039757 378 YVLMYNILAG----V-------------------GRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 378 ~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
|+.++..|.+ + +..++|..+|++|.+.|+.|+.
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 9998865432 1 2246799999999999999863
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-53 Score=411.00 Aligned_cols=368 Identities=20% Similarity=0.290 Sum_probs=326.0
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc-CCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH-SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 99 (415)
..++..+|+.+|..|.+.|++++|+++|+.|. .. ++. | |..+|+.++.+|++.++++.+.+++..|.+.|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~---~~~~~~--~---~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~ 154 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILE---AGCPFT--L---PASTYDALVEACIALKSIRCVKAVYWHVESSGF 154 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHH---hcCCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 34566799999999999999999999999998 54 456 7 999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC----CCChhHHHHHHHHH
Q 039757 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGILDGY 175 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~ 175 (415)
.||..+|+.++..|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|. .|+..||+.++.++
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 47888999999999
Q ss_pred HhccCCCCcc----------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 176 TRMNRSNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 176 ~~~~~~~~a~----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
.+.|..+.+. ..++..+++.++.+|++.|++++|.++|+.|... +..+||+||.+|++.|++++|
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----TTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCCHHHH
Confidence 8888776655 6678888999999999999999999999888643 888899999999999999999
Q ss_pred HHHHHHhhhh--CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc--------------
Q 039757 246 LKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309 (415)
Q Consensus 246 ~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------------- 309 (415)
.++|++|... .||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++.+|++.|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 9999998776 488889999999999999999999999999999999999999998888888877
Q ss_pred ---chHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHc-c-cCCCccHHHHH
Q 039757 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-E-RGNGGDYVLMY 382 (415)
Q Consensus 310 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~l~ 382 (415)
+|+.+|.+|++.|+.++|.++|++|... .||..||+.++.+|.+.|++++|.++|+.|.+. + .|+..+|..++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 7888888888888888888888888765 788888888888888888888888888888764 3 34667888888
Q ss_pred HHHHhcCchhhHHHHHHHH
Q 039757 383 NILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m 401 (415)
++|++.|++++|.+++++|
T Consensus 470 ~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC
Confidence 8888888888888888765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=7.3e-26 Score=229.28 Aligned_cols=387 Identities=13% Similarity=0.029 Sum_probs=263.5
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++...|..++..+.... .+++.+|..+...+...|++++|.+.|+++. ...+. +...+..+...+...|
T Consensus 445 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKAL---SIEPD------FFPAAANLARIDIQEG 513 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH---hhCCC------cHHHHHHHHHHHHHCC
Confidence 56677777777776643 3556678888888888888888888888877 44433 5566777777778888
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.+ .+...+..++..+.+.|++++|.++++.
T Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888877654 44666777777777778888888877777653 3445666777777777777777777777
Q ss_pred CCC---CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 160 MPC---RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 160 m~~---~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
+.+ .+...|..+..++.+.|++++|. .+.+...+..+...+...|++++|...++.+.+. .|.+..
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 670 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTE 670 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHH
Confidence 652 34566777777777777777766 2334455666667777777777777777777765 455667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.+..++..+...|++++|.++++.+....| +...+..+...+...|++++|...|+++... .|+..++..+...+..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 777777777777777777777777766533 4555666667777777777777777776664 3444555555555555
Q ss_pred CCc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHH
Q 039757 307 GGL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 307 ~~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (415)
.|+ .+..+...|...|++++|.+.|+++....| +..++..+...+...|+ .+|+.+++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 554 445566677777777777777777665533 45566666666666666 55666666
Q ss_pred HHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
++.+..|.++..+..++.++...|++++|.++++++.+.+.
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66666666666666666666666666666666666665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=8.5e-26 Score=228.81 Aligned_cols=384 Identities=12% Similarity=0.045 Sum_probs=301.6
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.|.+.|....+..+ .+...+..+...+...|++++|.+.|+.+. ...+. +..++..+...+.+.|
T Consensus 479 ~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVL---TIDPK------NLRAILALAGLYLRTG 547 (899)
T ss_pred CCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcC------cHHHHHHHHHHHHHcC
Confidence 566778888887776542 345567778888888888888888888887 55544 6778888888888888
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
++++|..+++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...+.+.|++++|...|++
T Consensus 548 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888887765 45666777788888888888888888888764 4567888888888888888888888888
Q ss_pred CCC---CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 160 MPC---RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 160 m~~---~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
+.+ .+...+..+..++.+.|++++|. .+.+...+..+...+...|+++.|..+++.+.+.. |.+..
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 704 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAAL 704 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChH
Confidence 753 35566778888888888888877 34456677888888888888888888888888773 55777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccC
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 307 (415)
.+..+...+...|++++|.+.|+++....|+..++..++.++...|++++|...++++.+.. ..+...+..+...+...
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888888776766777788888888888888888888887752 23445555555555555
Q ss_pred Cc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 308 GL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 308 ~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
|+ .+..+...+...|+ ++|+..++++....| +..++..+...+...|++++|.+++++
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55 56677888888888 778888887765534 455677788888888888889999988
Q ss_pred HHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+.+.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 863 a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 863 AVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888888888888888899999888888875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.2e-22 Score=185.66 Aligned_cols=304 Identities=15% Similarity=0.094 Sum_probs=248.0
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cc------hhhHHHHHH
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RN------LVTWNVMIT 142 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~ 142 (415)
........+...|+++.|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+.+ ++ ...+..+..
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 33334455678899999999999999875 44667889999999999999999999998875 21 246888999
Q ss_pred HHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
.|.+.|++++|..+|+++.+.+ +.+..++..+...+...|++++|...++.+.+.+..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG----------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC----------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997533 335567778888889999999999999999887533
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh--hh
Q 039757 223 AFD---IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR--VT 296 (415)
Q Consensus 223 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~ 296 (415)
+.. ...+..+...+.+.|++++|...|+++.+..| +...+..+...+.+.|++++|.++|+++... .|+. .+
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 251 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEV 251 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHH
Confidence 212 23456778889999999999999999987655 4567888999999999999999999999875 3432 22
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
+. .++..|...|++++|.+.++++....|+...+..++..+.+.|++++|..+++++.+..|.+.
T Consensus 252 ~~--------------~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~- 316 (389)
T PRK11788 252 LP--------------KLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR- 316 (389)
T ss_pred HH--------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-
Confidence 23 367779999999999999999877668877778899999999999999999999999876544
Q ss_pred cHHHHHHHHHh---cCchhhHHHHHHHHhhhccccCCCCC
Q 039757 377 DYVLMYNILAG---VGRYVDAERLRRVMDERNALKFPGRS 413 (415)
Q Consensus 377 ~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~ 413 (415)
.+..++..+.. .|+.+++..++++|.++++++.|.+.
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 66666666654 56999999999999999999999853
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.4e-21 Score=178.60 Aligned_cols=298 Identities=13% Similarity=0.050 Sum_probs=244.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc---hhhHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH---VYVNTA 108 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 108 (415)
...+...|++++|+..|+++. ..++. +..++..+...+...|+++.|..+++.+...+..++ ...+..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEML---KVDPE------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHH---hcCcc------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445677899999999999999 65544 677899999999999999999999999987543222 256788
Q ss_pred HHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc
Q 039757 109 LVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185 (415)
Q Consensus 109 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 185 (415)
+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+....
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------- 175 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL----------------- 175 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-----------------
Confidence 89999999999999999999976 4677899999999999999999999999875331000
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--hhhHH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN--LVSWT 263 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 263 (415)
.......+..+...+...|++++|...++++.+. .|.+...+..++..|.+.|++++|.++|+++....|+ ..+++
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 0001123456677788899999999999999986 4657788889999999999999999999999876554 35688
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHH
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (415)
.++.+|...|++++|...++++.+. .|+...+.. ++..+.+.|++++|.++++++....|+..+
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~--------------la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEE--YPGADLLLA--------------LAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHH--------------HHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 9999999999999999999999886 576655433 677799999999999999988777799999
Q ss_pred HHHHHHHHhh---cCChHHHHHHHHHHHHcccC
Q 039757 344 RRILLGACSF---HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 344 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 373 (415)
+..++..+.. .|+.+++..+++++.+....
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9988887764 55899999999999987644
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-21 Score=172.59 Aligned_cols=354 Identities=12% Similarity=0.061 Sum_probs=298.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
..+|+.+...+-..|++++|+.+++.+. +..+. ....|..+..++...|+.+.|.+.|...++. .|+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~ai---el~p~------fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ 184 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAI---ELKPK------FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLY 184 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHH---hcCch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchh
Confidence 4579999999999999999999999999 66666 8889999999999999999999999998875 46554
Q ss_pred hHHH-HHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHh
Q 039757 105 VNTA-LVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGILDGYTR 177 (415)
Q Consensus 105 ~~~~-li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~ 177 (415)
...+ +-..+-..|++++|...+.+..+ |. ...|+.|.-.+-.+|+...|+..|++..+-|+ ..|-.|.+.|..
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE 264 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence 4333 33445567999999988887665 54 34799999999999999999999999885443 578899999999
Q ss_pred ccCCCCcc--------C-CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039757 178 MNRSNGAS--------T-EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248 (415)
Q Consensus 178 ~~~~~~a~--------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 248 (415)
.+.+++|. . +.....+..+...|...|..+.|+..|++.++. .|.-+..|+.|..++-..|++.+|++.
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 99999988 3 344567888888899999999999999999987 687899999999999999999999999
Q ss_pred HHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH
Q 039757 249 FEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 249 ~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A 327 (415)
|++.....|+ ....+.|...|...|.+++|..+|....+ +.|.-.. ..+.|...|-++|++++|
T Consensus 343 YnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aa-------------a~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 343 YNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAA-------------AHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhh-------------hhhhHHHHHHhcccHHHH
Confidence 9998887554 57899999999999999999999988776 3555433 244577889999999999
Q ss_pred HHHHhcCCCCCcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 328 EKIALGIPSEITDV-VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 328 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
+..+++...-.|+. ..++.+...|-..|+.+.|++.+.+++..+|.-.+++..|...|-.+|+..+|++-+++......
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99998887766754 48888999999999999999999999998888888899999999999999999999988776543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.3e-19 Score=173.98 Aligned_cols=318 Identities=11% Similarity=-0.008 Sum_probs=186.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHH
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
.-.++..+.+.|++++|..+++... ...+. +...+..++.+....|+++.|.+.++.+.+.. +.+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l---~~~p~------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~ 114 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRV---LTAKN------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVL 114 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHH---HhCCC------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 4456778888999999999999988 66555 55666677777888999999999999998864 44667788
Q ss_pred HHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhccCC
Q 039757 108 ALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNV-VSWTGILDGYTRMNRS 181 (415)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~ 181 (415)
.+...+...|++++|...+++..+ | +...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCH
Confidence 888889999999999999998875 4 466788899999999999999999987742 332 222121 224444444
Q ss_pred CCcc--------C--CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 039757 182 NGAS--------T--EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS----ALK 247 (415)
Q Consensus 182 ~~a~--------~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~ 247 (415)
++|. . .++......+..++...|++++|...++.+.+. .|.+...+..+...+...|++++ |..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 4443 0 111222222334444555555555555555544 23344445555555555555543 455
Q ss_pred HHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHH
Q 039757 248 LFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326 (415)
Q Consensus 248 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~ 326 (415)
.|+++....| +...+..+...+...|++++|...+++.... .|+..... ..+...|.+.|++++
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~-------------~~La~~l~~~G~~~e 336 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR-------------AMYARALRQVGQYTA 336 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH-------------HHHHHHHHHCCCHHH
Confidence 5555444433 2334555555555555555555555554442 33322211 114444555555555
Q ss_pred HHHHHhcCCCCCcCHHH-HHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 327 AEKIALGIPSEITDVVV-RRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 327 A~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
|.+.++.+....|+... +..+..++...|+.++|...|+++.+..|.
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 55555544433333222 222333444555555555555555554444
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3e-19 Score=171.52 Aligned_cols=332 Identities=11% Similarity=-0.008 Sum_probs=261.5
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.+++..|..++..+.....- +...+..++.+....|+++.|...|+++. ...+. +...+..+...+...
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l---~~~P~------~~~a~~~la~~l~~~ 123 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLL---AVNVC------QPEDVLLVASVLLKS 123 (656)
T ss_pred cCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHH---HhCCC------ChHHHHHHHHHHHHc
Confidence 46778888888888776632 23345555577777999999999999999 66655 778899999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
|+++.|...++.+.+.. +.+...+..+...+...|+.++|...++.+.. |+ ...+..+ ..+.+.|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998864 44677788899999999999999999987753 43 3344333 34788999999999999
Q ss_pred hCCCC----ChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhH----HHHHHhhhhhcCC
Q 039757 159 EMPCR----NVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRN----CQLIHGYGEKRGF 221 (415)
Q Consensus 159 ~m~~~----~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~ 221 (415)
.+.+. +...+..+..++.+.|++++|. .+.+...+..+...+...|++++ |...++...+.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 87643 2334455667888999988887 34456677788889999999986 89999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.|.+..++..+...+...|++++|...+++.....| +...+..+..++.+.|++++|...|+++... .|+...+..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~- 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR- 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH-
Confidence 677899999999999999999999999999988766 4567888899999999999999999999875 566544322
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
.+...+...|+.++|...|++.....|+.. ..++++|...+....+.-...
T Consensus 357 ------------~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 357 ------------YAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred ------------HHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 134558899999999999998877655542 345567777777777655443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=8.4e-19 Score=168.83 Aligned_cols=241 Identities=13% Similarity=0.006 Sum_probs=192.2
Q ss_pred CCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhccCCCCcc--------CCCc-hHHHHhHHHHHhhcCChhHHHHH
Q 039757 148 GELEYARSLFEEMPCR------NVVSWTGILDGYTRMNRSNGAS--------TEPS-EITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 148 g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~--------~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
+++++|.+.|++..+. ....|..+...+...|++++|. ..|+ ...+..+...+...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788888888877632 3345777778888888888887 3343 45777888888999999999999
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 291 (415)
++.+.+. .|.+..++..+...+...|++++|...|++.....| +...+..+...+.+.|++++|+..|++..+. .
T Consensus 388 ~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 388 FDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 9999887 577899999999999999999999999999988765 5677888899999999999999999998874 4
Q ss_pred CChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH-H-------HHHHHHHHHhhcCChHHHHHH
Q 039757 292 PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV-V-------VRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~ 363 (415)
|+.... +..+...+...|++++|++.|+......|+. . .++.....+...|++++|.++
T Consensus 464 P~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 464 PEAPDV-------------YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred CCChHH-------------HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 554321 2236677899999999999998766542321 1 112222233446999999999
Q ss_pred HHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+++..+.+|.+...+..++.++.+.|++++|...+++..+..
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999988888889999999999999999999999986543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.2e-18 Score=178.37 Aligned_cols=373 Identities=10% Similarity=0.024 Sum_probs=224.3
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHH---------
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS--------- 72 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------- 72 (415)
.++.+.|...|+..++..+ .+...+..+...|.+.|++++|+..|++.. ...+. . +....|.
T Consensus 282 ~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al---~~~p~--~--~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKAL---ALDPH--S--SNRDKWESLLKVNRYW 352 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC--c--cchhHHHHHHHhhhHH
Confidence 3567888888988887552 367789999999999999999999999998 44433 1 0212221
Q ss_pred ---HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHh
Q 039757 73 ---FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVK 146 (415)
Q Consensus 73 ---~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 146 (415)
.....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+ | +...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 22446778999999999999998875 44667777888999999999999999999875 3 3456666666664
Q ss_pred hCCHHHHHHHHhhCCCCC------------hhHHHHHHHHHHhccCCCCcc--------CCC-chHHHHhHHHHHhhcCC
Q 039757 147 WGELEYARSLFEEMPCRN------------VVSWTGILDGYTRMNRSNGAS--------TEP-SEITILAVLPAIWQNGA 205 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~------------~~~~~~li~~~~~~~~~~~a~--------~~~-~~~~~~~ll~~~~~~~~ 205 (415)
.++.++|..+++.+.... ...+..+...+...|++++|. ..| +...+..+...+.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 457788888887765321 112333445556666666665 222 33445556666667777
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------------------------------
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------------------------------ 255 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------------ 255 (415)
+++|...++.+.+. .|.++..+..+...+...++.++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 77777777776654 3445544444444444555555555555443221
Q ss_pred -----------CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCH
Q 039757 256 -----------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRL 324 (415)
Q Consensus 256 -----------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~ 324 (415)
+.+...+..+...+.+.|++++|+..|++..+. .|+... .+..++..|...|+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~-------------a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNAD-------------ARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-------------HHHHHHHHHHHCCCH
Confidence 122233344444444555555555555554442 233211 112244455555666
Q ss_pred HHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC------ccHHHHHHHHHhcCchhhHHHH
Q 039757 325 EQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG------GDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
++|++.++......| +...+..+..++...|++++|.++++++....+.++ ..+..+...+...|++++|...
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666655544333 233444455555556666666666666555443322 2333445555566666666666
Q ss_pred HHHHh
Q 039757 398 RRVMD 402 (415)
Q Consensus 398 ~~~m~ 402 (415)
+++..
T Consensus 734 y~~Al 738 (1157)
T PRK11447 734 YKDAM 738 (1157)
T ss_pred HHHHH
Confidence 65554
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-19 Score=159.60 Aligned_cols=361 Identities=11% Similarity=0.001 Sum_probs=296.6
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.|..++..+++... ..+..|-.+..++...|+.+.|.+.|.... +..+. .....+.+...+-..|
T Consensus 130 g~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~------l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPD------LYCARSDLGNLLKAEG 198 (966)
T ss_pred chHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcc------hhhhhcchhHHHHhhc
Confidence 567778888888877552 456789999999999999999999999998 44332 2223334444555678
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
+..+|...+.+.++.. +-=...|+.|...+...|++-.|++.|++..+ |+ ...|..|...|-..+.+++|...+.+
T Consensus 199 rl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999999999888764 22356788899999999999999999999886 44 34799999999999999999999988
Q ss_pred CC--CC-ChhHHHHHHHHHHhccCCCCcc--------CCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 160 MP--CR-NVVSWTGILDGYTRMNRSNGAS--------TEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 160 m~--~~-~~~~~~~li~~~~~~~~~~~a~--------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
.. .| ..+.+..+...|...|..+-|. ..| -+..|+.+..++-..|++.+|.+.|.+.+.. .|..+.
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had 355 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD 355 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence 75 33 4566777777788888887776 334 4678999999999999999999999999987 676888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
..+.|...|...|.+++|..+|....+-.|. ...+|.|...|-++|++++|+..|++... ++|+...
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd---------- 423 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD---------- 423 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH----------
Confidence 9999999999999999999999999887565 45699999999999999999999999887 5776543
Q ss_pred CCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
.|+.+...|...|+.+.|.+.+.+...-.|. ...++.|...|-..|+..+|+.-++..+...|+.+.+|-.++.++
T Consensus 424 ---a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ---ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred ---HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 3555778899999999999999887766564 458899999999999999999999999999999888888888776
Q ss_pred HhcCchh
Q 039757 386 AGVGRYV 392 (415)
Q Consensus 386 ~~~g~~~ 392 (415)
.--.+|.
T Consensus 501 q~vcdw~ 507 (966)
T KOG4626|consen 501 QIVCDWT 507 (966)
T ss_pred HHHhccc
Confidence 5444433
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=7.7e-18 Score=172.55 Aligned_cols=364 Identities=10% Similarity=0.003 Sum_probs=272.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC-chhhHH---
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNT--- 107 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~--- 107 (415)
...+...|++++|+..|++.. ...+. +...+..+...+.+.|++++|...|++..+..... ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL---~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAV---RANPK------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 456778999999999999998 66555 78899999999999999999999999998764221 111121
Q ss_pred ---------HHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--C-ChhHHHHHH
Q 039757 108 ---------ALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIL 172 (415)
Q Consensus 108 ---------~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li 172 (415)
.+...+.+.|++++|+..|++..+ | +...+..+...+...|++++|++.|++..+ | +...+..+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 224567789999999999999875 3 566788899999999999999999999874 3 344566666
Q ss_pred HHHHhccCCCCccC-----CC-------------chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 173 DGYTRMNRSNGAST-----EP-------------SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 173 ~~~~~~~~~~~a~~-----~~-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
..|. .++.++|.. .+ ....+......+...|++++|...+++..+. .|.++.++..+..
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~ 503 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 6664 345555541 00 0122344556678899999999999999987 5778899999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH---------HHHHHHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF---------LSVLNAC 304 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---------~~ll~~~ 304 (415)
.|.+.|++++|...|+++....| +...+..+...+...++.++|...++.+......++...+ ......+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999987645 5555666666678899999999999886543222222111 1111112
Q ss_pred ccCCc----------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 305 SHGGL----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 305 ~~~~~----------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
...|+ .+..+...+.+.|+.++|+..|+++....| +...+..++..+...|++++|++.++.+
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22221 455677788888888888888887776645 5667888888888888999999888888
Q ss_pred HHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
.+..+.+...+..+..++...|++++|.++++++......
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 8877777777888888888889999999988888776543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.2e-17 Score=160.04 Aligned_cols=379 Identities=10% Similarity=-0.029 Sum_probs=282.8
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.++...|.+++....... ..+...+..+...+...|++++|..+|++.. ...+. +...+..+...+...
T Consensus 28 ~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al---~~~P~------~~~a~~~la~~l~~~ 96 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKAL---SLEPQ------NDDYQRGLILTLADA 96 (765)
T ss_pred cCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHC
Confidence 367778888888887633 2445568999999999999999999999988 44444 667788888899999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...|..++|++.++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999998774 44556 88888899999999999999999875 4 45566778888888999999999998
Q ss_pred hCCC-CCh------hHHHHHHHHHHhc-----cCC---CCcc-----------CCCchH-HH----HhHHHHHhhcCChh
Q 039757 159 EMPC-RNV------VSWTGILDGYTRM-----NRS---NGAS-----------TEPSEI-TI----LAVLPAIWQNGAVR 207 (415)
Q Consensus 159 ~m~~-~~~------~~~~~li~~~~~~-----~~~---~~a~-----------~~~~~~-~~----~~ll~~~~~~~~~~ 207 (415)
.... |+. .....++...... +++ ++|. ..|+.. .+ ...+.++...|+.+
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 7765 110 0111122211111 111 1111 112211 11 11134556779999
Q ss_pred HHHHHHhhhhhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-----hhHHHHHHHHHccCchHHHHHH
Q 039757 208 NCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-----VSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~~ 281 (415)
+|+..|+.+.+.+.. |.+.. ..+...|...|++++|...|+++...+|.. .....+..++...|++++|..+
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999988532 22222 335778999999999999999987764432 3466677788999999999999
Q ss_pred HHHHHhcCC-----------CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHH
Q 039757 282 FERMQKVGL-----------KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLG 349 (415)
Q Consensus 282 ~~~m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 349 (415)
++++....- .|+...... +..+...+...|++++|++.++++....| +...+..+..
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a-----------~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQG-----------QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999987520 122111110 12256678899999999999999877755 5668889999
Q ss_pred HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+...|++++|++.++++.+..|.+...+..++..+.+.|++++|..+++++.+...
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999987543
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.2e-16 Score=154.28 Aligned_cols=377 Identities=11% Similarity=-0.019 Sum_probs=281.5
Q ss_pred CCchhhHHHHHHhHhhccCCcchH--HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHT--LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 79 (415)
+++...|...+....+.. |+. ..+ .++..+...|+.++|+..+++.. ..... .......+...+.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~---~p~n~------~~~~llalA~ly~ 113 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ---SSMNI------SSRGLASAARAYR 113 (822)
T ss_pred CCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc---cCCCC------CHHHHHHHHHHHH
Confidence 467778888888888766 443 233 88888888899999999999886 21111 3333444466888
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLF 157 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 157 (415)
..|++++|.++|+.+.+.. +-+...+..++..+...++.++|++.++.+.+ |+...+..++..+...++..+|++.+
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 8899999999999998875 34566777788889999999999999999886 44444534434443456665688888
Q ss_pred hhCCC--C-ChhHHHHHHHHHHhccCCCCcc-------------------------------------------------
Q 039757 158 EEMPC--R-NVVSWTGILDGYTRMNRSNGAS------------------------------------------------- 185 (415)
Q Consensus 158 ~~m~~--~-~~~~~~~li~~~~~~~~~~~a~------------------------------------------------- 185 (415)
+++.+ | +...+..+..++.+.|-...|.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 88863 3 3344455555555544433333
Q ss_pred ----------CCCch-----HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 186 ----------TEPSE-----ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 186 ----------~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
..|.. ....-.+-++...++..+++..|+.+...+... ...+...+.++|...+++++|..+|+
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 11221 122345566788899999999999999887433 56788899999999999999999999
Q ss_pred HhhhhCC-------ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-------------ChhhHHHHHHHHccCCcc
Q 039757 251 DISVERK-------NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-------------NRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 251 ~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-------------~~~~~~~ll~~~~~~~~~ 310 (415)
.+....+ +......|..+|..++++++|..+++++.+. .| +.. |.. .
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~pn~d-~~~----------~ 418 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGLPGKEPNDD-WIE----------G 418 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCCCCCCCCcc-HHH----------H
Confidence 9866421 2333578899999999999999999999873 22 111 111 1
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+..++..+.-.|++.+|++.++++....| |......+...+...|.+.+|++.++.+....|.+..+....+.++...|
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 33367778899999999999999977756 77789999999999999999999999999998889999999999999999
Q ss_pred chhhHHHHHHHHhhhcc
Q 039757 390 RYVDAERLRRVMDERNA 406 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~ 406 (415)
+|.+|..+.+...+...
T Consensus 499 e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 499 EWHQMELLTDDVISRSP 515 (822)
T ss_pred hHHHHHHHHHHHHhhCC
Confidence 99999999977765443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=3.3e-16 Score=153.79 Aligned_cols=359 Identities=9% Similarity=-0.035 Sum_probs=263.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
++..-...+......|+.++|++++.... ..... +...+..+...+.+.|++++|.++++...+.. +.+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~---~~~~~------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~ 83 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYR---VHMQL------PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQND 83 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 44445677788888999999999999987 42322 55678999999999999999999999998764 4456
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGILDGYTR 177 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~ 177 (415)
..+..+..++...|++++|+..+++..+ | +.. +..+..++...|+.++|+..++++.+ | +...+..+...+..
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6777888999999999999999999875 4 455 88899999999999999999999874 3 44556667777777
Q ss_pred ccCCCCcc-------CCCch------HHHHhHHHHH-----hhcCCh---hHHHHHHhhhhhc-CCCCCCHHHHH----H
Q 039757 178 MNRSNGAS-------TEPSE------ITILAVLPAI-----WQNGAV---RNCQLIHGYGEKR-GFNAFDIRVSN----C 231 (415)
Q Consensus 178 ~~~~~~a~-------~~~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~----~ 231 (415)
.+..++|. ..|+. ......+... ...+++ +.|...++.+.+. ...|.....+. .
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 77777665 11111 0111122222 122233 6788888888864 22232221111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCC-h-hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCC
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKN-L-VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV-TFLSVLNACSHGG 308 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~ 308 (415)
.+..+...|++++|+..|+++...+++ + ..-..+...|...|++++|+.+|+++.+. .|... .....
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~-------- 312 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEE-------- 312 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHH--------
Confidence 133456779999999999999886432 1 12233577899999999999999998764 33321 00000
Q ss_pred cchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------------C---HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 309 LHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------------D---VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
...|..++.+.|++++|.++++.+....| + ...+..+...+...|+.++|++.++++....|
T Consensus 313 --~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 313 --LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred --HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 11255568899999999999988776533 2 23456677788999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+..++..+...|++++|++.+++.....
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999988765
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.2e-15 Score=147.09 Aligned_cols=352 Identities=14% Similarity=-0.030 Sum_probs=254.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
.+......+.+.|++++|+..|++.+ .. . | +...|..+..++.+.|+++.|++.++..++.. +.+...+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al---~~--~--p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~ 197 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAI---EC--K--P---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKAL 197 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---hc--C--C---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 35566778889999999999999988 33 3 5 66789999999999999999999999998875 3466788
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCC
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 183 (415)
..+..+|...|++++|+.-|..... .+......++.-+........+...++.-. .+...+..+.. +....+.+.
T Consensus 198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCc
Confidence 8899999999999999987765532 111111222222222112233444443322 22233333322 222211111
Q ss_pred cc--------CCCc-hHHHHhHHHH---HhhcCChhHHHHHHhhhhhcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 184 AS--------TEPS-EITILAVLPA---IWQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 184 a~--------~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
.. ..+. ...+..+... ....+++++|...|+...+.+ ..|.....+..+..++...|++++|...|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 0111 0111111111 133578999999999999864 245567788999999999999999999999
Q ss_pred HhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 251 DISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 251 ~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
+.....|+ ...|..+...+...|++++|...|++..+. .|+.... |..+...+...|++++|..
T Consensus 356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~-------------~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDI-------------YYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHHHHHcCCHHHHHH
Confidence 99887664 567889999999999999999999998875 4554321 2236667899999999999
Q ss_pred HHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 330 IALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 330 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.|++.....| +...+..+...+.+.|++++|+..+++..+..|.++..+..++.++...|++++|...+++......
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 9998877755 4567888888999999999999999999999998999999999999999999999999999877543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=4.1e-15 Score=146.70 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=59.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHc-CCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 153 (415)
.+.|.+.|+++.|++++..+.+.+ +.+......|..+|.. .++ +.+..+++...+.++..+..+...|.+.|+.++|
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHH
Confidence 556666777777777777777665 2334445555566666 355 6666666654445777788888889999999999
Q ss_pred HHHHhhCC
Q 039757 154 RSLFEEMP 161 (415)
Q Consensus 154 ~~~~~~m~ 161 (415)
.++++++.
T Consensus 267 ~~~L~~~~ 274 (987)
T PRK09782 267 QHYLIENK 274 (987)
T ss_pred HHHHHhCc
Confidence 99988876
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.2e-14 Score=134.67 Aligned_cols=354 Identities=12% Similarity=0.002 Sum_probs=271.6
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 100 (415)
+.|.+...-.....+.-.|+.++|.+++.+.+ ...+. +...|.+|...|-..|+.+++...+-.+.... +
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvI---kqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p 204 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVI---KQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-P 204 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-C
Confidence 44555554444554555699999999999999 77766 88999999999999999999988877665543 4
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh-hHHHHHHHHHH
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV-VSWTGILDGYT 176 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~li~~~~ 176 (415)
-|...|..+.+...+.|.++.|.-.|.+..+ ++...+-.-+..|-+.|+...|.+-|.++...++ +.|-
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e------- 277 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE------- 277 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH-------
Confidence 5778999999999999999999999999886 3444555667789999999999999999875332 1111
Q ss_pred hccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-
Q 039757 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE- 255 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 255 (415)
.-......+++.+...++.+.|.+.+......+....+...++.++..|.+...++.|.....++...
T Consensus 278 -----------r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 278 -----------RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred -----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 11223344556666777778898888888886656667888999999999999999999998887761
Q ss_pred -----------------------CCChhhHH----HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCC
Q 039757 256 -----------------------RKNLVSWT----SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308 (415)
Q Consensus 256 -----------------------~~~~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 308 (415)
-++...|. .++-++...+..+....+...+....+.|+... ..
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~-dL--------- 416 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV-DL--------- 416 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH-HH---------
Confidence 01112222 233344555555666666666666654443322 11
Q ss_pred cchHHHHHHhHhcCCHHHHHHHHhcCCCCCc--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 309 LHYGCLVDMLGRAGRLEQAEKIALGIPSEIT--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
|.-+.++|...|++.+|+++|..+....+ +...|-.+.++|...|.++.|.+.+++++...|.+...-..|...+.
T Consensus 417 --~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 417 --YLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred --HHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 33478889999999999999999988733 45689999999999999999999999999999999999999999999
Q ss_pred hcCchhhHHHHHHHHhhhccccCCCCCC
Q 039757 387 GVGRYVDAERLRRVMDERNALKFPGRSL 414 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 414 (415)
+.|+.++|.+.++.+...+....++++|
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999998666666677777
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.9e-13 Score=131.10 Aligned_cols=352 Identities=11% Similarity=-0.000 Sum_probs=247.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
+-...+.|+++.|++.|++.. ...+. +......++..+...|+.++|+.++++.... -+........+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL---~~~P~------~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEES---KAGPL------QSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHH---hhCcc------chhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 345567999999999999998 55544 3222228888888999999999999998721 1223333334466
Q ss_pred HHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHh--ccCCCCcc-
Q 039757 112 MYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--MNRSNGAS- 185 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~--~~~~~~a~- 185 (415)
.+...|++++|+++|+++.+ | ++..+..++..+...++.++|++.++++...++.....+..++.. .++..+|.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHH
Confidence 88889999999999999986 3 456777888999999999999999999986444333234445544 33332344
Q ss_pred -------CCC-chHHHHhHHHHHhhcCChhHHHHHHh-------------------------------------------
Q 039757 186 -------TEP-SEITILAVLPAIWQNGAVRNCQLIHG------------------------------------------- 214 (415)
Q Consensus 186 -------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~------------------------------------------- 214 (415)
..| +...+..+..++.+.|-...|.++.+
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 334 45555666666666554444443322
Q ss_pred -----hhhhc-CCCCCCHHHH-H---HHHHHHHhcCCHHHHHHHHHHhhhhCC--ChhhHHHHHHHHHccCchHHHHHHH
Q 039757 215 -----YGEKR-GFNAFDIRVS-N---CLIDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 215 -----~~~~~-~~~~~~~~~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+... +..|+....| . -.+-++...|+..++++.|+.+...+. ...+-..+.++|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 22221 1113222222 1 234467778899999999999987632 3456677889999999999999999
Q ss_pred HHHHhcCCC--CChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------------CH---HHH
Q 039757 283 ERMQKVGLK--PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------------DV---VVR 344 (415)
Q Consensus 283 ~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------------~~---~~~ 344 (415)
+++...... +....... ...|.-+|...+++++|..+++.+....| +. ..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-----------~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLD-----------ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred HHHhhccccccCCCcchHH-----------HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 998764211 11111110 12366779999999999999998876422 21 234
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..++..+...|+..+|++.++++....|.|......+..++...|+..+|.+.++.....
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 456777889999999999999999999999999999999999999999999999776654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=1.6e-13 Score=135.59 Aligned_cols=203 Identities=13% Similarity=-0.026 Sum_probs=158.0
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 267 (415)
|+...+..+...+.+.|+.+.|...++...+.. |.....+..+.......|++++|...|++.....|+...|..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 334445566677788899999999998888763 545555544445555669999999999988887778778888888
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
++.+.|++++|+..|++.... .|+...+.. .+...+...|+.++|+..+++.....| +...+..
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~-------------nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL--EPNNSNYQA-------------ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH-------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 899999999999999988875 677665332 355568888999999999887776645 5567888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
+..++...|++++|+..++++.+..|.+..+.........+..++..|.+-+++....++.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 8888999999999999999999988888888888888888888888888888776655443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2e-13 Score=116.51 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=231.0
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC----CCchhhHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP----ERNLVTWNVMIT 142 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~ 142 (415)
+..++.++|.++|+-...+.|.+++++..+...+.+..+||.+|.+-.-.-+ .++..+|. .||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 7789999999999999999999999999887778999999999977544333 45555554 599999999999
Q ss_pred HHHhhCCHHHH----HHHHhhCC----CCChhHHHHHHHHHHhccCCCCcc-------------------CCCchHHHHh
Q 039757 143 GLVKWGELEYA----RSLFEEMP----CRNVVSWTGILDGYTRMNRSNGAS-------------------TEPSEITILA 195 (415)
Q Consensus 143 ~~~~~g~~~~a----~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~-------------------~~~~~~~~~~ 195 (415)
+..+.|+++.| .+++.+|+ +|...+|..+|..+++.++..+.. .+.+...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999988765 45556666 588899999999999888875544 3445667888
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcC---CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHH
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRG---FNAFD---IRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIIS 267 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~ 267 (415)
.+..|.+..+.+.|.++..-+.... ..+++ ..-|..+....|.....+.-...|+.|... .|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8999999999999998877665431 11222 334667788888889999999999999877 588888999999
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc-ch----HHHHHHhHhc-CCHHHHH-HHHhcCCCCCcC
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-HY----GCLVDMLGRA-GRLEQAE-KIALGIPSEITD 340 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~----~~li~~~~~~-g~~~~A~-~~~~~~~~~~p~ 340 (415)
+....|.++-.-.++..|+..|..-....-..++.-.++... .. ..+-....++ -++.++. ..-.++....-.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 999999999888888888887744444443333333322221 00 0000000000 0011110 001112222223
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCcc---HHHHHHHHHhcCchhhHHHHHHHHhhhcccc
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGD---YVLMYNILAGVGRYVDAERLRRVMDERNALK 408 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (415)
....+.+.-.+.+.|..++|.+++..+.+.+-. .... ...+++.-.+.+....|..+++-|...+...
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 445555566667888888888888877554422 2222 3355566666777777777777776665543
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.6e-13 Score=124.64 Aligned_cols=126 Identities=8% Similarity=0.001 Sum_probs=93.2
Q ss_pred HHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhh
Q 039757 28 FNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 28 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
...+..+... .|+++.|.+.+.... ...-. | ...|.....+..+.|+++.+.+.+.++.+. .|+...
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~---~~~~~--p----~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~ 153 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNA---DHAEQ--P----VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQL 153 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---hcccc--h----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchH
Confidence 3344444333 699999998888765 32212 1 223444455668999999999999999775 455543
Q ss_pred HH--HHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 106 NT--ALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 106 ~~--~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
.. .....+...|+++.|.+.++.+.+ | ++.....+...|.+.|++++|.+++..+.+..
T Consensus 154 ~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 154 PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 32 346788899999999999999876 3 56788899999999999999999999997543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=7.4e-14 Score=120.00 Aligned_cols=244 Identities=11% Similarity=0.031 Sum_probs=174.6
Q ss_pred HHhhCCHHHHHHHHhhCCCCChhHHHHHH------HHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhH
Q 039757 144 LVKWGELEYARSLFEEMPCRNVVSWTGIL------DGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRN 208 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li------~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~ 208 (415)
+.+.|+++.|+++++-..+.|..+-+... ..+.-..++..|. ...+......-.......|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 46789999999999888766554433222 2221122333332 22333333333344566899999
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
|...|++.+... ..-......+.-.+...|++++|++.|-++..- ..++.....+...|-...++.+|++++-+...
T Consensus 509 a~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999999872 112223333444678889999999999887664 34666777788888888899999999866554
Q ss_pred cCCCCChhhHHHHHHHHccCCc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHH
Q 039757 288 VGLKPNRVTFLSVLNACSHGGL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347 (415)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 347 (415)
. +..|......+-.-|-+.|+ +...|...|....-+++|+..|++..--.|+..-|..+
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 3 33345555666666667776 34457777888888999999998876667999999988
Q ss_pred HHHHh-hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 348 LGACS-FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 348 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
+..|. +.|++.+|.++++...+..|.+......|++.+...|-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 87765 68999999999999999999999999999998877763
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=2e-12 Score=120.19 Aligned_cols=272 Identities=15% Similarity=0.100 Sum_probs=203.9
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.|+.+.|..++.++++..+ .+...|-.|...|-..|+.+++...+-.+- ...++ |...|..+.....+.
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---HL~p~------d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAA---HLNPK------DYELWKRLADLSEQL 220 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHH---hcCCC------ChHHHHHHHHHHHhc
Confidence 3678899999999998763 566789999999999999999988776554 44444 778999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCch----h----hHHHHHHHHHhhCCHHHH
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL----V----TWNVMITGLVKWGELEYA 153 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a 153 (415)
|+++.|.-.|.++++.. +++....---+..|-+.|+...|...|.++.+.++ . .--..++.+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999876 45655555577888899999999988888765221 1 222345556666666777
Q ss_pred HHHHhhCCC-----CChhHHHHHHHHHHhccCCCCcc-------------------------------------------
Q 039757 154 RSLFEEMPC-----RNVVSWTGILDGYTRMNRSNGAS------------------------------------------- 185 (415)
Q Consensus 154 ~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~------------------------------------------- 185 (415)
.+.++.... -+...++.++..+.+...++.+.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 777766542 12233444444444333333222
Q ss_pred ------------------------------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHH
Q 039757 186 ------------------------------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235 (415)
Q Consensus 186 ------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (415)
..-+...|..+..++.+.|++..|..++..+....... +..+|-.+..+
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARC 458 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHH
Confidence 11223457778888999999999999999999885444 67789999999
Q ss_pred HHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
|...|.+++|.+.|+++....| +...--.|...+.+.|+.++|.+++..|.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999988755 45566777788899999999999999864
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=6.4e-16 Score=134.18 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
++..+..++..+...++++++.++++.+.... .+...|..+...+.+.|+.++|+..+++..+. .|+.....
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~--- 183 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDAR--- 183 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHH---
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH---
Confidence 44555566666777777777777777765432 35556677777777777777777777777764 56533321
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (415)
..++..+...|+.+++.++++..... ..++..+..+..++...|+.++|+.++++.....|.|+.....
T Consensus 184 ----------~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 184 ----------NALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLA 253 (280)
T ss_dssp ----------HHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred ----------HHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 12555567777777766666554433 2355677788888888888999999999888888888888888
Q ss_pred HHHHHHhcCchhhHHHHHHHHh
Q 039757 381 MYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
++.++...|+.++|.++.++..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT----------------
T ss_pred cccccccccccccccccccccc
Confidence 8888988999998888877654
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.5e-15 Score=131.80 Aligned_cols=266 Identities=15% Similarity=0.102 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc-CCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH-SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
|+...+ .+...+.+.|++++|+++++.... .. ++. +...|..+...+...++++.|.+.++.+.+.+. -
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~--~~~~~~------~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~ 76 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQ--KIAPPD------DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-A 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccc--cccccc------ccccccccccccccccccccccccccccccccc-c
Confidence 443444 557888999999999999966541 22 223 666677777778889999999999999988763 3
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
+...+..++.. ...+++++|.++++..-+ +++..+..++..+.+.++++++.++++.......
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------- 141 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-------------- 141 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------------
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------
Confidence 56677777777 689999999999887643 5677788899999999999999999998652110
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCC
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKN 258 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~ 258 (415)
...+...|......+.+.|+.++|...+++..+. .|.+..+.+.++..+...|+.+++.++++..... +.|
T Consensus 142 ------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 142 ------APDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp --------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 2456667788888889999999999999999998 6878999999999999999999999999888777 457
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
...+..+..+|...|++++|+.+|++..+. .|+...+.. .+.+.+...|+.++|.++.++...
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~-------------~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLL-------------AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHH-------------HHHHHHT-----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccc--ccccccccc-------------cccccccccccccccccccccccc
Confidence 778899999999999999999999998874 565544332 267779999999999998876543
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.3e-12 Score=119.30 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch--
Q 039757 28 FNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV-- 103 (415)
Q Consensus 28 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-- 103 (415)
+..+.+++.. .|+++.|.+.+.+.. ...+. ....+-....+..+.|+++.|.+.+....+.. |+.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~---~~~~~------~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l 153 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNA---DHAAE------PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNI 153 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHh---hcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCch
Confidence 3444444433 677777777776665 33322 22333444556666777777777777765542 333
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
.........+...|+++.|...++.+.+ | +...+..+...+...|++++|.++++.+.+
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2333345666677777777777777664 3 455666777777777777777777777664
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6e-14 Score=126.14 Aligned_cols=280 Identities=11% Similarity=0.027 Sum_probs=161.2
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCC--CCchhhHHHHHHHHHcCC
Q 039757 40 SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF--QSHVYVNTALVNMYVSLG 117 (415)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g 117 (415)
+.++|+.+|.+.. .+-.. +......+.++|...+++++|+++|+.+.+... --+..+|.+.+..+-+.-
T Consensus 334 ~~~~A~~~~~klp---~h~~n------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLP---SHHYN------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHhhH---HhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 4566777777754 33333 445666677777777777777777777765421 125566666665543221
Q ss_pred Chh-HHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhH
Q 039757 118 FLK-DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV 196 (415)
Q Consensus 118 ~~~-~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~l 196 (415)
.+. .|..+.+.. ...+.+|-++.++|.-+++.+.|++.|++..+-|
T Consensus 405 ~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------------------------------- 451 (638)
T KOG1126|consen 405 ALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------------------------------- 451 (638)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--------------------------------
Confidence 111 122222222 2346677777777777777777777777776543
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHH---HHHHHHHccC
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT---SIISGFAMHG 273 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~li~~~~~~~ 273 (415)
|...++|+.+.+-+.....+|.|...|+.... .|+..|| -+...|.+.+
T Consensus 452 --------------------------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 452 --------------------------PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred --------------------------CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccc
Confidence 33556666666666666666666666666655 3333333 3455566666
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACS 352 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 352 (415)
+++.|+-.|++..+ +.|....... | +...+.+.|+.|+|++++++.... ..|+..--.-+..+.
T Consensus 504 k~e~Ae~~fqkA~~--INP~nsvi~~----~---------~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVE--INPSNSVILC----H---------IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hhhHHHHHHHhhhc--CCccchhHHh----h---------hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 66666666666555 3444333211 1 444466666666666666655443 123333333444555
Q ss_pred hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..+++++|+..++++++..|++...|..++..|.+.|+.+.|+.-|--+.+.
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6666666666666666666666666666666666666666666655554443
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.6e-13 Score=122.36 Aligned_cols=282 Identities=13% Similarity=-0.035 Sum_probs=214.1
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHH--HHHHHHHhhCCHHHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWN--VMITGLVKWGELEYARS 155 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~a~~ 155 (415)
..|+++.|.+.+....+.+-.| ...+........+.|+++.|...++++.+ |+..... .....+...|++++|..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3589999998888765543222 22233334555789999999999999876 4443332 33678889999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH------HHH
Q 039757 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI------RVS 229 (415)
Q Consensus 156 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 229 (415)
.++++.+.+ +-+......+...+.+.|+++.+..++..+.+.+..++.. .+|
T Consensus 175 ~l~~~~~~~----------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (398)
T PRK10747 175 GVDKLLEVA----------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAW 232 (398)
T ss_pred HHHHHHhcC----------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999997543 2345667778888899999999999999999986543221 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCC
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 308 (415)
..++.......+.+...++++.+... +.++.....+...+...|+.++|.+++++..+. .|+....
T Consensus 233 ~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~----------- 299 (398)
T PRK10747 233 IGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV----------- 299 (398)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-----------
Confidence 34444445556677788888887655 347788999999999999999999999998874 4444221
Q ss_pred cchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh
Q 039757 309 LHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387 (415)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (415)
++.+....++.+++.+..+...+..|+ ...+..+.+.|.+.+++++|.+.|+.+.+..|. ...+..+..++.+
T Consensus 300 -----~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~ 373 (398)
T PRK10747 300 -----LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDR 373 (398)
T ss_pred -----HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 222344569999999999988887674 557888999999999999999999999998765 4567899999999
Q ss_pred cCchhhHHHHHHHHhh
Q 039757 388 VGRYVDAERLRRVMDE 403 (415)
Q Consensus 388 ~g~~~~A~~~~~~m~~ 403 (415)
.|+.++|.+++++-..
T Consensus 374 ~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 374 LHKPEEAAAMRRDGLM 389 (398)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999987654
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.5e-12 Score=121.80 Aligned_cols=390 Identities=11% Similarity=0.058 Sum_probs=236.8
Q ss_pred hHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCch
Q 039757 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~ 86 (415)
.+.+++...-...+ .|+.+.+.|...|.-.|+++.++.+...+...-..+.. -...|-.+.+++-..|+++.
T Consensus 254 ~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~------~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI------KAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHhhccHHH
Confidence 34444444443332 56677888888888899999999988888731111111 34567888889999999999
Q ss_pred HHHHHHHHHHcCCCCchh--hHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhC----CHHHHHHHH
Q 039757 87 GTQLHAVISKVGFQSHVY--VNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWG----ELEYARSLF 157 (415)
Q Consensus 87 a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~ 157 (415)
|..+|....+.. ++.. .+-.|...|.+.|+++.+...|+.+.+ | +..+...|...|+..+ ..++|..++
T Consensus 326 A~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 326 AFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 999988876653 4443 344567888899999999999988765 4 3556666666666664 456677777
Q ss_pred hhCCCCC---hhHHHHHH------------HHHHhccC-CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc--
Q 039757 158 EEMPCRN---VVSWTGIL------------DGYTRMNR-SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR-- 219 (415)
Q Consensus 158 ~~m~~~~---~~~~~~li------------~~~~~~~~-~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 219 (415)
.+..++. ...|-.+. .+|.+..+ +......+.....|.+...+...|+++.|...|......
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 6665432 22222222 22222111 011113467778888888889999999999988887765
Q ss_pred -CCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHHHHHHccCchHHHHHHHHHHHhc-CCC
Q 039757 220 -GFNA-----FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMGKAAVENFERMQKV-GLK 291 (415)
Q Consensus 220 -~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~ 291 (415)
...+ .+..+--.+..++-..++.+.|.+.|..+....|+- ..|-.++......+...+|...+++.... .-.
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 1111 122344457777778888999999999888876653 34555543344456677777777776442 233
Q ss_pred CChhhH------------------HHHHHHHccCCcchHH--HHHHhH------------hcCCHHHHHHHHhcCCCCCc
Q 039757 292 PNRVTF------------------LSVLNACSHGGLHYGC--LVDMLG------------RAGRLEQAEKIALGIPSEIT 339 (415)
Q Consensus 292 p~~~~~------------------~~ll~~~~~~~~~~~~--li~~~~------------~~g~~~~A~~~~~~~~~~~p 339 (415)
|+..++ ...+.......++|.. |...|. ..+..++|+++|..+....|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 444333 3233322222223322 122111 12344566666665554422
Q ss_pred -CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 340 -DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 340 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
|...-+-+.-.++..|+++.|..+|.++.+.......+|..++.+|..+|+|..|+++|+...+.-.
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555666666666676666666666665666666666666666666666666666555443
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.8e-12 Score=105.74 Aligned_cols=292 Identities=11% Similarity=0.052 Sum_probs=207.3
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC-c--hhhHHHHHHHHH
Q 039757 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-H--VYVNTALVNMYV 114 (415)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~ 114 (415)
+.+.++|.++|-+|. +...+ +..+-.+|.+.|.+.|..+.|+.+.+.+.++.--+ + ....-.|..-|.
T Consensus 48 s~Q~dKAvdlF~e~l---~~d~~------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 48 SNQPDKAVDLFLEML---QEDPE------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred hcCcchHHHHHHHHH---hcCch------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 677899999999998 55444 66677888899999999999999999987642111 1 223345667788
Q ss_pred cCCChhHHHHHhcccCC-C--chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 115 SLGFLKDSSKLFDELPE-R--NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 115 ~~g~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
..|-+|.|+.+|..+.+ + -......|+..|-...+|++|+++-+++.+.+..+|+.-|. .
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-----------------q 181 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-----------------Q 181 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-----------------H
Confidence 99999999999999886 3 24567789999999999999999988887655544444332 2
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh--hhHHHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL--VSWTSIISGF 269 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~ 269 (415)
.|-.+...+....+++.|...+++..+. .|.....--.+.+.+...|+++.|.+.++.+.++.|+. .+...|..+|
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2344556666778888999999988887 45566666677888999999999999999998876654 4578888999
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (415)
...|+.++....+.++.+....++... . +.+.-....-.+.|...+.+-..+.|+...+..||.
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~~~l--~--------------l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGADAEL--M--------------LADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCccHHH--H--------------HHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 999999999999999887633333322 1 111122233345555554443334499998888888
Q ss_pred HHhhc---CChHHHHHHHHHHHHcccC
Q 039757 350 ACSFH---GNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 350 ~~~~~---~~~~~a~~~~~~~~~~~~~ 373 (415)
..... |...+.+..++.|......
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHHHHh
Confidence 75532 3345555666666554433
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=8.5e-12 Score=102.96 Aligned_cols=305 Identities=14% Similarity=0.093 Sum_probs=229.6
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cchh------hHHHHHH
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLV------TWNVMIT 142 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~ 142 (415)
.|..=++.+ -..++++|.++|-+|.+.. +.+..+.-+|-+.|-+.|..|.|+.+-+.+.+ ||.. ....|..
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 444444433 3467899999999998754 44566777888999999999999999999875 5432 3456777
Q ss_pred HHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
-|..+|-+|.|+.+|..+.+.+ ..-+.....++..|-...++++|..+-.++.+.+..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~----------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG----------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch----------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 7899999999999999987533 234556778888999999999999999999988766
Q ss_pred CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 223 AFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 223 ~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
+... ..|.-|...+....+.+.|..++.+..+..|+ +..--.+.+.+...|++++|.+.++...+.+ .....
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn----~~yl~ 249 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN----PEYLS 249 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC----hHHHH
Confidence 5443 34666677777788999999999999887554 4445556678999999999999999998863 33333
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccH
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (415)
.++.. |..+|.+.|+.++....+.++.+..+....-..+...-....-.+.|..++.+-+...| +...+
T Consensus 250 evl~~----------L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf 318 (389)
T COG2956 250 EVLEM----------LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGF 318 (389)
T ss_pred HHHHH----------HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHH
Confidence 33333 77779999999999999988877756666655666555555566777777776666554 45566
Q ss_pred HHHHHHHH---hcCchhhHHHHHHHHhhhccccCCCCC
Q 039757 379 VLMYNILA---GVGRYVDAERLRRVMDERNALKFPGRS 413 (415)
Q Consensus 379 ~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~ 413 (415)
..++..-. ..|+..+...+++.|....++..|.|.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 66776653 356788999999999999988887763
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.3e-11 Score=105.59 Aligned_cols=344 Identities=17% Similarity=0.151 Sum_probs=226.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh--cCCCch-HHHHHHHHHHcCCCCchhh
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT--LSYPNL-GTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~--~~~~~~-a~~~~~~~~~~g~~~~~~~ 105 (415)
|.|+. ....|.+..+.-+++.|. +.|+. . +...-..|++..+- ..++-- -++.|-.|.+.| ..+..+
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~---~e~~~--v---S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s 189 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMR---SENVD--V---SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS 189 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHH---hcCCC--C---CHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc
Confidence 34433 445777888888888887 66665 4 55555555443322 222222 234444555444 233333
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhccC-
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGILDGYTRMNR- 180 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~- 180 (415)
| +.|++.+ -+|+.. -....+|.+||.++|+--..+.|.+++++... -+..++|.+|.+-.-...
T Consensus 190 W--------K~G~vAd--L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K 258 (625)
T KOG4422|consen 190 W--------KSGAVAD--LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGK 258 (625)
T ss_pred c--------ccccHHH--HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccH
Confidence 3 3444443 334433 34567899999999999999999999988763 456777877765332211
Q ss_pred -CC-Cc---cCCCchHHHHhHHHHHhhcCChhHH----HHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH
Q 039757 181 -SN-GA---STEPSEITILAVLPAIWQNGAVRNC----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS-ALKLFE 250 (415)
Q Consensus 181 -~~-~a---~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 250 (415)
.- +. ...||..|+|.++.+.++.|+++.+ .+++.+|.+.|+.| ...+|..+|..+++.++..+ |..++.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHhcccCCchhhhHHHHH
Confidence 10 00 1789999999999999999977664 57888999999888 88999999998888887644 555666
Q ss_pred Hhhhh------C---C-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcC----CCCChhhHHHHHHHHccCCcchHHHHH
Q 039757 251 DISVE------R---K-NLVSWTSIISGFAMHGMGKAAVENFERMQKVG----LKPNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 251 ~~~~~------~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
++... + | |...|..-+..|....+.+-|.++-.-+.... +.|+ ..-+. -|..+..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~-~~~~f----------Yyr~~~~ 406 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD-QHRNF----------YYRKFFD 406 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH-HHHHH----------HHHHHHH
Confidence 65544 1 2 34456777788888888888888776665321 2233 21111 1445777
Q ss_pred HhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc-------------------cC--
Q 039757 317 MLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-------------------RG-- 373 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~-- 373 (415)
..|+....+.-...|+.|..+ .|+..+...++++....+.++-.-++|..++.-| +.
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 788888888888888888877 7788888888887777777766666665555433 00
Q ss_pred ----------------------------------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 374 ----------------------------------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 374 ----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++...+..+..+.|.|+.++|.+++.-+.+.+
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11245566677889999999999999886544
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=9.7e-13 Score=118.48 Aligned_cols=280 Identities=11% Similarity=0.009 Sum_probs=218.2
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCc
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 85 (415)
..|...|..+.... .-+.-....+.++|...+++++|.++|+.+.+.....+. +.++|.+++-.+-+.
T Consensus 336 ~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~------~meiyST~LWHLq~~---- 403 (638)
T KOG1126|consen 336 REALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK------GMEIYSTTLWHLQDE---- 403 (638)
T ss_pred HHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------chhHHHHHHHHHHhh----
Confidence 35566666643322 223346677889999999999999999999954333444 888999888654322
Q ss_pred hHHHHH-HHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 86 LGTQLH-AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 86 ~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
-++.++ +.+.+.. +-.+.+|.++..+|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+...
T Consensus 404 v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 404 VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 233333 3333333 557889999999999999999999999999863 45688999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC
Q 039757 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241 (415)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (415)
..|+..|++ |..+.-.|.+.++++.|+-.|+.+.+- .|.+..+...+...+.+.|+
T Consensus 483 ~~~~rhYnA----------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 483 GVDPRHYNA----------------------WYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred cCCchhhHH----------------------HHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhh
Confidence 877666654 556667788899999999999999887 67788888889999999999
Q ss_pred HHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh
Q 039757 242 IFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR 320 (415)
Q Consensus 242 ~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~ 320 (415)
.++|+++|+++.... .|+..-...+..+...+++++|+..++++++ +.|+..+... .+...|.+
T Consensus 539 ~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~-------------llgki~k~ 603 (638)
T KOG1126|consen 539 KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFA-------------LLGKIYKR 603 (638)
T ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHH-------------HHHHHHHH
Confidence 999999999988764 4666666777888889999999999999998 4788776443 36667888
Q ss_pred cCCHHHHHHHHhcCCCC
Q 039757 321 AGRLEQAEKIALGIPSE 337 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~ 337 (415)
.|+.+.|+.-|.-+...
T Consensus 604 ~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 604 LGNTDLALLHFSWALDL 620 (638)
T ss_pred HccchHHHHhhHHHhcC
Confidence 89888888877655544
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.1e-11 Score=104.63 Aligned_cols=377 Identities=10% Similarity=0.020 Sum_probs=199.1
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
+.+...|+.+|...+... ..+...|-..+..=.+++.+..|..++++.. ..-+. -...|---+..=-..
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAv---t~lPR------VdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAV---TILPR------VDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHH---Hhcch------HHHHHHHHHHHHHHh
Confidence 456677888888877655 4777788888888888888888888888887 33222 222343444444456
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC--CCchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
|++..|.++|+.-.+. .|+...|++.|+.=.+...++.|..+++... .|++.+|--....=-+.|....|.++|+.
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8888888888887664 6888888888888888888888888888754 58888887777777778888887777776
Q ss_pred CCC--CChhHHHHHHHHHH----hccCCCCcc--------CCCc---hHHHHhHHHHHhhcCChhHHHHH--------Hh
Q 039757 160 MPC--RNVVSWTGILDGYT----RMNRSNGAS--------TEPS---EITILAVLPAIWQNGAVRNCQLI--------HG 214 (415)
Q Consensus 160 m~~--~~~~~~~~li~~~~----~~~~~~~a~--------~~~~---~~~~~~ll~~~~~~~~~~~a~~~--------~~ 214 (415)
..+ .|-..-..+..++. ++..++.|. ..|. ...|......--+-|+....+.+ |+
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 642 11111111111111 122222222 1111 12222333222333333333222 23
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh---hhHHHHHHH--------HHccCchHHHHHHHH
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL---VSWTSIISG--------FAMHGMGKAAVENFE 283 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~li~~--------~~~~~~~~~A~~~~~ 283 (415)
..++. .|.|-.+|--.++.-...|+.+...++|++....-|.. ..|...|.. =....+.+.+.++|+
T Consensus 313 ~~v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333 34455555555555555566666666666655542211 112111111 122445555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHH
Q 039757 284 RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
...+. +.-...||..+--. ......++.++..|.+++.......|...+|...|..-.+.++++.+..+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlm----------yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLM----------YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHhh-cCcccchHHHHHHH----------HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 55552 22333444332111 12222334444444444444433334444444444444444444444444
Q ss_pred HHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+++.++-+|.+..+|...+..-...|+.+.|..+|+-..+.
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 44444444444444444444444444444444444444433
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=5.5e-12 Score=118.17 Aligned_cols=393 Identities=11% Similarity=-0.004 Sum_probs=232.0
Q ss_pred CCchhhHHHHHHhHhhccCCcch-HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHH-TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
.+|-+.++.+..+.+..--..+- ..+|--+.++|-..|++++|...|.... ..... - ....+.-|.+.+.+
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~---k~~~d--~---~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL---KADND--N---FVLPLVGLGQMYIK 354 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccCCC--C---ccccccchhHHHHH
Confidence 34555566666666554422221 1246677888888899999988888777 33333 1 13455667788888
Q ss_pred cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCC----ChhHHHHHhcccCCC---chhhHHHHHHHHHhhCCHHHH
Q 039757 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG----FLKDSSKLFDELPER---NLVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a 153 (415)
.|+.+.+...|+...+.. +-+..+.-.|...|...+ ..+.|..++....++ |...|-.+...+....-+ .+
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~s 432 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-AS 432 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HH
Confidence 888888888888887763 445566666666666654 456666666665542 455565555555433222 22
Q ss_pred HHHHhhC--------CCCChhHHHHHHHHHHhccCCCCcc-------------CCCch------HHHHhHHHHHhhcCCh
Q 039757 154 RSLFEEM--------PCRNVVSWTGILDGYTRMNRSNGAS-------------TEPSE------ITILAVLPAIWQNGAV 206 (415)
Q Consensus 154 ~~~~~~m--------~~~~~~~~~~li~~~~~~~~~~~a~-------------~~~~~------~~~~~ll~~~~~~~~~ 206 (415)
+.+|... ....++.-|.+.......|.+++|. ..++. .+--.+.......++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 3333322 1344455666666666666666555 11222 1233444455566677
Q ss_pred hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
+.|...|..+.+. .|.-...|--++.+....+...+|...++..... ..++..+..+...+....++..|.+-|...
T Consensus 513 ~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 7777777777765 3433333433332223334555666666555443 123333333444444444444444433333
Q ss_pred HhcC-CCCChhhHHHHHHHH----ccCCc----------------------------chHHHHHHhHhcCCHHHHHHHHh
Q 039757 286 QKVG-LKPNRVTFLSVLNAC----SHGGL----------------------------HYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 286 ~~~g-~~p~~~~~~~ll~~~----~~~~~----------------------------~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
.+.- ..+|..+...|=.-| .+... .-+.+.-.++..|++.+|..+|.
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFs 670 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFS 670 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHH
Confidence 2210 011211111111100 00000 12335566888999999999999
Q ss_pred cCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 333 GIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 333 ~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+.+. .-...+|-.+..+|...|++..|+++|+...+...+ ++.....|++++.+.|++.+|.+.+.......+
T Consensus 671 qVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 671 QVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 88776 225568889999999999999999999999887765 677888999999999999999999877665443
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=7e-12 Score=114.63 Aligned_cols=284 Identities=12% Similarity=-0.024 Sum_probs=203.2
Q ss_pred HhcCCCchHHHHHHHHHHcCCCCchh-hHHHHHHHHHcCCChhHHHHHhcccCC--Cch--hhHHHHHHHHHhhCCHHHH
Q 039757 79 VTLSYPNLGTQLHAVISKVGFQSHVY-VNTALVNMYVSLGFLKDSSKLFDELPE--RNL--VTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~a 153 (415)
...|+++.|.+.+....+.. |+.. .+-....+..+.|+.+.|.+.+++..+ |+. ...-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 46789999999998887654 4433 334455778889999999999998754 443 3444458888899999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHH-HH
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN-CL 232 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 232 (415)
...++.+.+.. +-+......+...+...|+++.+...+..+.+.+..+ ...+. .-
T Consensus 173 l~~l~~l~~~~----------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~ 228 (409)
T TIGR00540 173 RHGVDKLLEMA----------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLE 228 (409)
T ss_pred HHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHH
Confidence 99999997533 2245667788888999999999999999999986433 32221 11
Q ss_pred HH---HHHhcCCHHHHHHHHHHhhhh-----CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH-HHHHH
Q 039757 233 ID---TYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL-SVLNA 303 (415)
Q Consensus 233 i~---~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~ 303 (415)
.. .....+..+++.+.+..+... +.+...+..+...+...|+.++|.+++++..+. .||..... .++..
T Consensus 229 ~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~ 306 (409)
T TIGR00540 229 QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLP 306 (409)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHH
Confidence 11 112223333233344443333 237788999999999999999999999999886 45554311 01111
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH---HHHHHHHHHHhhcCChHHHHHHHHH--HHHcccCCCccH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV---VVRRILLGACSFHGNVEMGERVTRK--VLEMERGNGGDY 378 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~ 378 (415)
......++.+.+.+.++...+..|+. ....++...+.+.|++++|.+.|+. ..+..| +...+
T Consensus 307 ------------~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~ 373 (409)
T TIGR00540 307 ------------IPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDL 373 (409)
T ss_pred ------------hhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHH
Confidence 11334577888888888777665643 5667889999999999999999995 555554 44557
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 379 VLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 379 ~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..++..+.+.|+.++|.+++++...
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7999999999999999999987543
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=4.9e-12 Score=117.26 Aligned_cols=238 Identities=11% Similarity=0.020 Sum_probs=164.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHh
Q 039757 47 LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126 (415)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 126 (415)
++-.+. ..|+. | +..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e---~~gi~--P---nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 12 FLALHE---ISGIL--P---NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred HHHHHH---HhcCC--C---chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 455566 88999 9 9999999999999999999999 9999988888888999999999999999988876
Q ss_pred cccCCCchhhHHHHHHHHHhhCCHHH---HHHHHhhCCC-------------------------CChhHHHHHHHHHHhc
Q 039757 127 DELPERNLVTWNVMITGLVKWGELEY---ARSLFEEMPC-------------------------RNVVSWTGILDGYTRM 178 (415)
Q Consensus 127 ~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~-------------------------~~~~~~~~li~~~~~~ 178 (415)
+|...+|.+|..+|...||+.. +.+.++.+.. ||..+ .+.-....
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHH
Confidence 7888999999999999999654 3332222210 11110 00000111
Q ss_pred cCCCCcc----CCCchHHHH---hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 179 NRSNGAS----TEPSEITIL---AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 179 ~~~~~a~----~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
|-++.+. ..|....++ .+++-+.. +....+++....... ...+++.+|.+++++-...|+.+.|..++.+
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl-~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSL-VEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHh-hcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1111000 011111110 01222211 122223333222222 1234999999999999999999999999999
Q ss_pred hhhhC--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 252 ISVER--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 252 ~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
|.+.+ .+..-|-.|+-+ .++...++.+++-|...|+.|+..|+...+..|..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99985 345555566655 88889999999999999999999999998888877544
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.4e-11 Score=104.76 Aligned_cols=344 Identities=13% Similarity=0.002 Sum_probs=222.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc-hhh
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD-SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYV 105 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~ 105 (415)
+-....-|.++|.+++|++.+.+.+ ... | + +.-|.....+|...|+++.+.+--...++. .|+ +..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI---~l~----p---~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KA 185 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAI---ELC----P---DEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKA 185 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHH---hcC----C---CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHH
Confidence 4445567788999999999999998 333 4 5 778899999999999999988887777665 343 445
Q ss_pred HHHHHHHHHcCCChhHHHH------HhcccCC-------------------------------CchhhHHHHHHHHHhh-
Q 039757 106 NTALVNMYVSLGFLKDSSK------LFDELPE-------------------------------RNLVTWNVMITGLVKW- 147 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~------~~~~~~~-------------------------------~~~~~~~~li~~~~~~- 147 (415)
+..-..++-..|++++|+. +++.... |+.....+....+...
T Consensus 186 l~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 186 LLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 5556666777777766652 1111110 2222222222222210
Q ss_pred -------C-----CHHHHHHHHhhCCC--------------------C-----Chh------HHHHHHHHHHhccCCCCc
Q 039757 148 -------G-----ELEYARSLFEEMPC--------------------R-----NVV------SWTGILDGYTRMNRSNGA 184 (415)
Q Consensus 148 -------g-----~~~~a~~~~~~m~~--------------------~-----~~~------~~~~li~~~~~~~~~~~a 184 (415)
+ ...++.+.+..-.. + |.. +.......+.-.|+...+
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 0 11222222221110 0 000 000011112223443333
Q ss_pred c--------CCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 185 S--------TEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 185 ~--------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
. ..| +...|--+...|....+.++....|....+. .|.++.+|..-..++.-.+++++|..=|++....
T Consensus 346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 111 1222555666677788888888888888776 5667778877777777788888888888888776
Q ss_pred CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 256 RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 256 ~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
.| ++..|-.+..+.-+.+++++++..|++.+++ -|+ ...|+ -....+...++++.|.+.|+.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~--------------~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYN--------------LFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHH--------------HHHHHHhhHHhHHHHHHHHHH
Confidence 54 4566777777777778888888888887765 343 33333 366678999999999999987
Q ss_pred CCCCCcC---------HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 334 IPSEITD---------VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 334 ~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
.....|+ +.+...++..-.+ +++..|..+++++.+.+|....+|..|...-.+.|+.++|+++|++-.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6655333 2222233332223 899999999999999999999999999999999999999999998754
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=4.3e-10 Score=101.41 Aligned_cols=357 Identities=12% Similarity=0.014 Sum_probs=249.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
.+|+.-...|.+.+.++-|..+|.... +--+. +...|......--..|..+....+|+++...- +-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~al---qvfp~------k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~l 586 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHAL---QVFPC------KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEIL 586 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHH---hhccc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhH
Confidence 356666667777777777777777766 22222 55666666666666667777777777776653 334444
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhccC
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~ 180 (415)
|......+-..|++..|..++...-+ .+...|-+-++.-.....+++|..+|.+.. .++...|..-++..--.+.
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 55555666667777777777766654 245567777777777777788877777765 3444455444444444444
Q ss_pred CCCcc--------CCCch-HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 181 SNGAS--------TEPSE-ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 181 ~~~a~--------~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
.++|. ..|+- ..|..+.+.+.+.++.+.|...|..-.+. .|..+..|-.|.+.-.+.|.+-+|..+|++
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44444 33333 34556666777888888888888887776 677888888888888888888999999988
Q ss_pred hhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 252 ISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 252 ~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
..-..| +...|-..|+.=.+.|+.+.|..++.+..+. -|+.-. .|..-|.+..+.++--.+.+.
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~-------------LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGL-------------LWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccch-------------hHHHHHHhccCcccchHHHHH
Confidence 776644 6778888899889999999998888777664 233322 233355556666666666666
Q ss_pred HhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 331 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
++.... |+...-.+...+....++++|.+.|.+....++.+..+|..+...+.+.|.-++-.+++......... -
T Consensus 810 Lkkce~---dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~--h 884 (913)
T KOG0495|consen 810 LKKCEH---DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--H 884 (913)
T ss_pred HHhccC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--C
Confidence 666554 55566677777888889999999999999999999999999999999999999999999887765433 3
Q ss_pred CCCC
Q 039757 411 GRSL 414 (415)
Q Consensus 411 ~~~~ 414 (415)
|..|
T Consensus 885 G~~W 888 (913)
T KOG0495|consen 885 GELW 888 (913)
T ss_pred CcHH
Confidence 5444
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=8.6e-11 Score=100.01 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=98.5
Q ss_pred HHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHH
Q 039757 30 TLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 30 ~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
.+..++.+ .|++.+|+++..+-. .++.. ....|..-..+.-..|+.+.+..++.++.+..-.++....-
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rna---e~~e~------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~l 157 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNA---EHGEQ------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVEL 157 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhh---hcCcc------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHH
Confidence 34444444 689999999988876 67766 35567777778888899999999999887764356666777
Q ss_pred HHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 108 ALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
+........|+++.|..-.+++.+ .++........+|.+.|++.+...++..+.+..
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 777888889999888887777654 567788889999999999999999999887644
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=2.4e-11 Score=102.64 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=166.9
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
....+..+...+...|++++|...+++..+. .|.+...+..+...+...|++++|.+.+++.....| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3456777888899999999999999999887 466788999999999999999999999999887744 5667888899
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.+...|++++|...+++.......|..... +..+...+...|++++|.+.+++.....| +...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARS-------------LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 999999999999999999875322222111 22256678999999999999988776644 4567888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+...+...|++++|...+++..+..+.++..+..++..+...|+.++|..+.+.+...
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999986667778888899999999999999998887654
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-11 Score=105.97 Aligned_cols=348 Identities=12% Similarity=0.044 Sum_probs=226.4
Q ss_pred CcchHHHHHHHH--HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC
Q 039757 21 LLHHTLLFNTLL--HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98 (415)
Q Consensus 21 ~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 98 (415)
..-+...|-..+ ..+-+.|....|+..|.... ..-+. .=..|..|...+ .+ .+....... |
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v---~~~P~------~W~AWleL~~li---t~----~e~~~~l~~-~ 220 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVV---NRYPW------FWSAWLELSELI---TD----IEILSILVV-G 220 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHH---hcCCc------chHHHHHHHHhh---ch----HHHHHHHHh-c
Confidence 333334444444 45566788899999888877 22111 222333333222 11 222222222 2
Q ss_pred CCCchhhHH--HHHHHHHcCCChhHHHHHhcccCC---Cch-hhHHHHHHHHHhhCCHHHHHHHHhhCCCC------Chh
Q 039757 99 FQSHVYVNT--ALVNMYVSLGFLKDSSKLFDELPE---RNL-VTWNVMITGLVKWGELEYARSLFEEMPCR------NVV 166 (415)
Q Consensus 99 ~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~ 166 (415)
.+.|..... .+..++-...+.+++..-.+.... |+. ..-+....+.-...|+++|+.+|+++.+. |..
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH
Confidence 222221111 133455555566666665555543 222 12222333344566777777777777643 445
Q ss_pred HHHHHHHHHHhccCCC-Ccc-----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC
Q 039757 167 SWTGILDGYTRMNRSN-GAS-----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240 (415)
Q Consensus 167 ~~~~li~~~~~~~~~~-~a~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 240 (415)
+|+.++-.-....+.. -|. .+....|...+.+-|+-.++.++|...|+..++. .|.....|+.+.+-|....
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhc
Confidence 5655543321100000 000 3455567777778888899999999999999998 5778899999999999999
Q ss_pred CHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhH
Q 039757 241 CIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG 319 (415)
Q Consensus 241 ~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~ 319 (415)
+...|.+-++...+-. .|-..|-.|.++|.-.+.+.-|+-.|++... ++|+..-... +|...|.
T Consensus 379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~-------------aLG~CY~ 443 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWV-------------ALGECYE 443 (559)
T ss_pred ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHH-------------HHHHHHH
Confidence 9999999999988874 4888999999999999999999999999887 4777665433 3666699
Q ss_pred hcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc-----cC--CCccHHHHHHHHHhcCch
Q 039757 320 RAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-----RG--NGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~--~~~~~~~l~~~~~~~g~~ 391 (415)
+.++.++|++.|.+...- ..+...+..|...|.+.++.++|...+.+-++.. .. ...+...|..-+.+.+++
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 999999999999887665 2344688999999999999999999999887733 11 223344567777788888
Q ss_pred hhHHHHHHHHh
Q 039757 392 VDAERLRRVMD 402 (415)
Q Consensus 392 ~~A~~~~~~m~ 402 (415)
++|..+.....
T Consensus 524 ~~As~Ya~~~~ 534 (559)
T KOG1155|consen 524 DEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHh
Confidence 88776554443
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=1e-09 Score=99.13 Aligned_cols=346 Identities=11% Similarity=0.009 Sum_probs=238.7
Q ss_pred HhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHH----HHcCCCCchhhHHHH
Q 039757 34 FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI----SKVGFQSHVYVNTAL 109 (415)
Q Consensus 34 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l 109 (415)
+|++..-++.|..++++.. +.-+. +...|.+....=-..|+.+...+++.+. ...|+..+..-|..=
T Consensus 415 AlarLetYenAkkvLNkaR---e~ipt------d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAR---EIIPT------DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 3444445555555555554 22222 5555555555555555555555555443 234555555555555
Q ss_pred HHHHHcCCChhHHHHHhcccCC------CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE------RNLVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~ 180 (415)
...|-+.|..-.+..+...... .-..||+.-...|.+.+.++-|..+|....+ .+...|......--..|.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence 5555555555555555544432 1234666666667777777777777766653 122333333222222222
Q ss_pred CCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 181 SNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 181 ~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
.+.-. .+-.+.-+..........|++..|..++....+. .|.+..+|-+-+.....+..++.|..+|.+
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 22111 3334444555556667789999999999999887 466888999999999999999999999999
Q ss_pred hhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
.....|+...|..-+..-...++.++|.+++++..+. -|+-.-+.. .+...+.+.++++.|...|
T Consensus 644 ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~l-------------mlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWL-------------MLGQIEEQMENIEMAREAY 708 (913)
T ss_pred HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHH-------------HHhHHHHHHHHHHHHHHHH
Confidence 9888888888888888888889999999999988774 566555433 3566688999999999998
Q ss_pred hcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 332 LGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 332 ~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..-...-|+ +..|-.|...-.+.|++-.|..++++..-.+|.+...|...+++-.+.|+.+.|..++.+..+.-
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777666564 45788888877888999999999999999999999999999999999999999998887766543
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.9e-10 Score=99.63 Aligned_cols=218 Identities=11% Similarity=0.045 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
+.|+..+.+-|+-.++.++|...|++..+- ....|+.|.+-|....+...|++-++...+-
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------------- 393 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------------- 393 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------
Confidence 344555555555555666666666655542 2335555666666666666666666555443
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CC
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KN 258 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 258 (415)
.+.|-..|-.+.++|.-.+...-|.-.|++..+. .|.|...|.+|.++|.+.++.++|++.|......+ .+
T Consensus 394 ------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 394 ------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred ------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 3557778999999999999999999999999987 78899999999999999999999999999988762 34
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhc----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKV----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
...+..|...|-+.++.++|.+.|.+-.+. |..-+......+. |...+.+.+++++|.......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f------------LA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF------------LAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH------------HHHHHHhhcchHHHHHHHHHH
Confidence 578999999999999999999888876552 3333322222211 555677888888875543222
Q ss_pred CCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 335 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.. -....++|..+++++.....
T Consensus 534 ~~----------------~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 534 LK----------------GETECEEAKALLREIRKIQA 555 (559)
T ss_pred hc----------------CCchHHHHHHHHHHHHHhcC
Confidence 21 13345677777777665443
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=5.3e-13 Score=82.02 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 257 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999998888753
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.4e-09 Score=92.31 Aligned_cols=370 Identities=8% Similarity=-0.014 Sum_probs=273.5
Q ss_pred CchhhHHHHHHhHhhccCCcchHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTL-LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
...+.|+.+|+.-+..- |-+. .|-..+..=-..|++..|.++|++-. ..+ | +...|++.|..=.+-
T Consensus 121 k~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~-----~w~--P---~eqaW~sfI~fElRy 187 (677)
T KOG1915|consen 121 KQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWM-----EWE--P---DEQAWLSFIKFELRY 187 (677)
T ss_pred hhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHH-----cCC--C---cHHHHHHHHHHHHHh
Confidence 35678888888877643 4443 46666666677899999999998866 234 6 999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC------CchhhHHHHHHHHHhhCCHHHHHH
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE------RNLVTWNVMITGLVKWGELEYARS 155 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~ 155 (415)
+.++.|..+++..+-. .|++.+|--....=.+.|+...|..+|+...+ .+...+.+....=.++..++.|.-
T Consensus 188 keieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~ 265 (677)
T KOG1915|consen 188 KEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARF 265 (677)
T ss_pred hHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 58999998888888899999999999988765 233455555555566777888888
Q ss_pred HHhhCCC--C---ChhHHHHHHHHHHhccCCCCcc-----------------CCCchHHHHhHHHHHhhcCChhHHHHHH
Q 039757 156 LFEEMPC--R---NVVSWTGILDGYTRMNRSNGAS-----------------TEPSEITILAVLPAIWQNGAVRNCQLIH 213 (415)
Q Consensus 156 ~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~-----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 213 (415)
+|+-... | ....|......--+-|+..... .+.|-.++-..+......|+.+...++|
T Consensus 266 iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~y 345 (677)
T KOG1915|consen 266 IYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETY 345 (677)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHH
Confidence 7765542 1 1233444443333444433332 5666778888888888899999999999
Q ss_pred hhhhhcCCCCCCH--HHHHHH----HH----HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHH----HccCchHHH
Q 039757 214 GYGEKRGFNAFDI--RVSNCL----ID----TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGF----AMHGMGKAA 278 (415)
Q Consensus 214 ~~~~~~~~~~~~~--~~~~~l----i~----~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~----~~~~~~~~A 278 (415)
+..... .||-. ..|.-. |+ .-....+.+.+.++|+...+.-| ...||..+--.| .++.+...|
T Consensus 346 ErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 346 ERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 999988 34321 111111 22 12345789999999998887633 455655544444 467899999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCCh
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNV 357 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 357 (415)
.+++...+ |.-|...+|.. .|..-.+.+++|.+..+++...+-.| +..+|.-....-...|+.
T Consensus 424 RkiLG~AI--G~cPK~KlFk~--------------YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 424 RKILGNAI--GKCPKDKLFKG--------------YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHh--ccCCchhHHHH--------------HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 99998765 45788888776 56667888999999999998887756 667898888888889999
Q ss_pred HHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 358 EMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.|..+|+.+++.... +.-.|-..|+--...|.++.|..+++++.+..
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999999999887654 33456677777788999999999999988754
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=1.5e-10 Score=110.03 Aligned_cols=247 Identities=12% Similarity=0.045 Sum_probs=169.0
Q ss_pred ChhHHHHHhcccCC--Cc-hhhHHHHHHHHH---------hhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc
Q 039757 118 FLKDSSKLFDELPE--RN-LVTWNVMITGLV---------KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185 (415)
Q Consensus 118 ~~~~a~~~~~~~~~--~~-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 185 (415)
++++|...|++..+ |+ ...|..+..++. ..+++++|...+++..+.+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--------------------- 334 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--------------------- 334 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC---------------------
Confidence 35677777777665 32 334555544443 2244678888887776533
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTS 264 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 264 (415)
+-+...+..+...+...|++++|...+++..+. .|.+...+..+..++...|++++|...+++.....|+. ..+..
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 234556666777778889999999999999987 57788888889999999999999999999998876653 33444
Q ss_pred HHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH-H
Q 039757 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV-V 343 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~ 343 (415)
++..+...|++++|...++++.... .|+....... +...|...|+.++|...++++....|+.. .
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~-------------la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSM-------------QVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHH-------------HHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 4555667889999999999887642 3444432222 44557889999999999988776655443 4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+.+...|+..| +.|...++.+.+..-.....+..+...|.-.|+-+.+..+ +++.+.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 455555667776 4778877777665543222223355566667777777766 7777654
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1.6e-10 Score=97.58 Aligned_cols=196 Identities=15% Similarity=-0.019 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHH
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLV 145 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 145 (415)
..+..+...+...|+++.|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344455555555555555555555554432 22344444455555555555555555554442 23334555555555
Q ss_pred hhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
..|++++|.+.|++...... .......+..+...+...|+++.|...+....+. .|.+
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 168 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPL--------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQR 168 (234)
T ss_pred HcccHHHHHHHHHHHHhccc--------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCC
Confidence 66666666666655542110 0112223344455556666666666666666655 3445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
...+..+...+...|++++|...+++..... .+...+..+...+...|+.++|..+.+.+..
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6677778888888888888888888776653 3455666777777788888888888777654
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.5e-11 Score=100.43 Aligned_cols=228 Identities=14% Similarity=0.059 Sum_probs=188.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 138 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
+.|.++|.+.|.+.+|.+.|+.-.+ ..|-..||..+-..|.+...++.|..++.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-----------------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-----------------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-----------------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 5677777888888888877776553 45667788888889999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+. .|.+.....-+.+.+...++.++|.++|+.+.+..| ++.....+...|.-.++++-|+..|+++.+.|+......
T Consensus 284 d~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 284 DS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred hc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 87 676777777888999999999999999999988744 677777788889999999999999999999998755544
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITD--VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.|+ ...+.-.+++|-++.-|++.... .|+ ...|-.+.......||+..|.+.|+..+..++
T Consensus 362 ~Ni---------------gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 362 CNI---------------GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred hhH---------------HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 443 33355577888888888766554 343 45788888888899999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+..+++.|...-.+.|+.++|..++....+..
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999998877654
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.9e-09 Score=92.00 Aligned_cols=277 Identities=10% Similarity=0.005 Sum_probs=213.8
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
+||.+.|+++...-.+.+. -.+..|-.-.++--..||.+.+-..+.+.- +...+ + +...+.+..+.....
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaa---e~~~~--~---~l~v~ltrarlll~~ 166 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAA---ELAGD--D---TLAVELTRARLLLNR 166 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHh---ccCCC--c---hHHHHHHHHHHHHhC
Confidence 5778888888777655551 223346666677788999999999999987 44223 3 667778888889999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC-----------chhhHHHHHHHHHhhCCH
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER-----------NLVTWNVMITGLVKWGEL 150 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~ 150 (415)
|+.+.|..-.+.+.+.+ +-..........+|.+.|++.....++..+.+. -..+|+.++.-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999998876 446777888889999999999999999998751 234788888877777777
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc
Q 039757 151 EYARSLFEEMP---CRNVVSWTGILDGYTRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219 (415)
Q Consensus 151 ~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (415)
+.-...++... +.++..-.+++.-+.+.|+.++|. ...|+. -..+-.+.+.++.+.-.+..++..+.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 77667777776 345666677777778888887776 222332 22333456677777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC
Q 039757 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 293 (415)
.|.++..+.+|...|.+.+.|.+|.+.|+...+.+|+..+|+.+.++|.+.|+.++|.++.++....-..|+
T Consensus 324 --h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 324 --HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred --CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 455788999999999999999999999999888889999999999999999999999999998765444444
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=2.3e-10 Score=108.70 Aligned_cols=244 Identities=11% Similarity=0.005 Sum_probs=156.2
Q ss_pred CchhhHHHHHHhHhhccCCcch-HHHHHHHHHHhh---------cCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHH
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHH-TLLFNTLLHFYS---------LADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 72 (415)
.+...|..+|...++.. |+ ...|..+...|. ..+++++|...+++.. ...+. +..++.
T Consensus 275 ~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al---~ldP~------~~~a~~ 342 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT---ELDHN------NPQALG 342 (553)
T ss_pred HHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---hcCCC------CHHHHH
Confidence 34556777777776654 33 334544444332 2345788888888888 66555 777788
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cch-hhHHHHHHHHHhhCC
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNL-VTWNVMITGLVKWGE 149 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~ 149 (415)
.+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+ |+. ..+..++..+...|+
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 88788888888888888888888765 34566677777888888888888888888765 432 233344445666788
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHH
Q 039757 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228 (415)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (415)
+++|...+++....+ .| +...+..+..++...|+.++|...+..+... .|.+...
T Consensus 422 ~eeA~~~~~~~l~~~----------------------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~ 477 (553)
T PRK12370 422 IDDAIRLGDELRSQH----------------------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIA 477 (553)
T ss_pred HHHHHHHHHHHHHhc----------------------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHH
Confidence 888888887764311 11 2233455556667788888888888776655 4445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhh---CCChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVE---RKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.+.+...|+..| ++|...++.+.+. .+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666666677766 4677766666554 1222222 33445556666666555 777664
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=7e-10 Score=95.98 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=193.7
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh-cCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT-LSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
..|.++|+++.|+++++-+. ...-. .. +...-|.-+--+.+ .+++..|.++-+..+... .-+......--.
T Consensus 427 ~~~lk~~d~~~aieilkv~~---~kdnk--~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn 498 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFE---KKDNK--TA--SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGN 498 (840)
T ss_pred HHHHhccCHHHHHHHHHHHH---hccch--hh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCc
Confidence 35778899999999888877 33222 10 11111221222222 236667777766654432 122222222222
Q ss_pred HHHcCCChhHHHHHhcccCCCchhhHHHH---HHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC
Q 039757 112 MYVSLGFLKDSSKLFDELPERNLVTWNVM---ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~ 188 (415)
.-...|++++|...+++....|...-.+| .-.+-+.|++++|++.|-++..- ...
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i----------------------l~n 556 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI----------------------LLN 556 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----------------------HHh
Confidence 33356889999999988887665433333 33466788999999888776310 122
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
+...+..+...|....+...|.+++.+.... .|.|+.+.+.|...|-+.|+-..|.+.+-+--.- +-+..+..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 4455566667777788888888888777665 7889999999999999999999998876543333 457788888888
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.|....-+++|+..|++.-- ++|+..-|..++..| +.+.|++.+|.++++.+..+.| +......
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc-------------~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC-------------FRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH-------------HHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 89999999999999998765 689999999988887 7899999999999999988755 7778888
Q ss_pred HHHHHhhcCC
Q 039757 347 LLGACSFHGN 356 (415)
Q Consensus 347 l~~~~~~~~~ 356 (415)
|++.+...|-
T Consensus 700 lvri~~dlgl 709 (840)
T KOG2003|consen 700 LVRIAGDLGL 709 (840)
T ss_pred HHHHhccccc
Confidence 8888776653
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=2.6e-10 Score=103.79 Aligned_cols=198 Identities=14% Similarity=0.051 Sum_probs=141.1
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhc-----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------CCChh-
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKR-----G-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------RKNLV- 260 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~- 260 (415)
+...|...+++++|..+|+.+... | ..|.-..+++.|..+|.+.|++++|...+++..+- .|.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 334445555555555555555431 1 12324566777888899999999998888876554 12332
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
.++.++..+...+++++|..++++..+. -..++...... +++.|...|...|++++|.++++++...
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~----------~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK----------IYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH----------HHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3777888899999999999999876542 12333322222 4677999999999999999999877544
Q ss_pred --------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc----cC---CCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 338 --------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEME----RG---NGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 338 --------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
.+ ....++.|...|.+.+++++|.++|.+..... +. ...+|..|+.+|.+.|++++|.++.+..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 12 23467788889999999999999998876543 33 2357889999999999999999999887
Q ss_pred hh
Q 039757 402 DE 403 (415)
Q Consensus 402 ~~ 403 (415)
..
T Consensus 477 ~~ 478 (508)
T KOG1840|consen 477 LN 478 (508)
T ss_pred HH
Confidence 74
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=5.4e-12 Score=77.49 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
||+.+||++|++|++.|++++|+++|++|. ..|+. | |..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~---~~g~~--P---~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK---KRGIK--P---DSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999 9 99999999999875
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=1.5e-08 Score=93.55 Aligned_cols=250 Identities=10% Similarity=0.022 Sum_probs=173.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 112 (415)
..+...|++++|++.++.-. ..-+. ...........+.+.|+.++|..++..+++.+ +.+..-|..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~---~~I~D------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE---KQILD------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh---hhCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 45678899999999998865 33333 45566777889999999999999999999986 3455555656666
Q ss_pred HHcC-----CChhHHHHHhcccCC--C-------------chhhHHHHHHHHHhhCCHHHHHHHHhhCCC----C-ChhH
Q 039757 113 YVSL-----GFLKDSSKLFDELPE--R-------------NLVTWNVMITGLVKWGELEYARSLFEEMPC----R-NVVS 167 (415)
Q Consensus 113 ~~~~-----g~~~~a~~~~~~~~~--~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~~ 167 (415)
..-. .+.+....+++++.+ | +...|...+..|.+.+--..+-.+|..++. + -..+
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 5322 246777788887753 1 122344555555444322223333333331 1 1223
Q ss_pred HHHHHHHHHhccCCCCc--------cCCCchH--HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHH
Q 039757 168 WTGILDGYTRMNRSNGA--------STEPSEI--TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a--------~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (415)
...++..|......... ...|... ++.-+...+...|++++|..+++..+.. .|..+..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 44455555443222211 1344443 4466677888999999999999999998 6877999999999999
Q ss_pred hcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 238 KCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
+.|++++|.+.++...... .|...=+..+..+.++|+.++|.+++......+..|-.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 9999999999999998864 35566677788899999999999999999887654433
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=7.5e-10 Score=96.64 Aligned_cols=317 Identities=13% Similarity=0.007 Sum_probs=193.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc-hhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHh
Q 039757 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVK 146 (415)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~ 146 (415)
+.....-|.+.|.+++|+++|.+.++. .|| +..|.....+|...|+++++.+.--...+ |+ ...+.--..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 445566688899999999999999886 466 77888899999999999999887776665 43 3467777778888
Q ss_pred hCCHHHHHHHH------hhCCC---------------------------CChhHHHHHHHHHHhccC-------------
Q 039757 147 WGELEYARSLF------EEMPC---------------------------RNVVSWTGILDGYTRMNR------------- 180 (415)
Q Consensus 147 ~g~~~~a~~~~------~~m~~---------------------------~~~~~~~~li~~~~~~~~------------- 180 (415)
.|++++|+.=+ +.... +.+..-.+.|..|...=.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 88888765422 21110 000111112222221100
Q ss_pred CCCcc------------------------------CCC-----ch----HHHHhHHHH--HhhcCChhHHHHHHhhhhhc
Q 039757 181 SNGAS------------------------------TEP-----SE----ITILAVLPA--IWQNGAVRNCQLIHGYGEKR 219 (415)
Q Consensus 181 ~~~a~------------------------------~~~-----~~----~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~ 219 (415)
.+.+. ..+ |. .....++.+ +.-.|+.-.+..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 00000 000 00 011111111 12346666666677776666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
.|.+...|--+..+|....+.++.+..|++.....| |+.+|-.-.+.+.-.+++++|..-|++.+.. .|+... .
T Consensus 356 --~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~-~ 430 (606)
T KOG0547|consen 356 --DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY-A 430 (606)
T ss_pred --CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH-H
Confidence 333444455566667777777777777777766643 5666777777777777777777777777663 444322 1
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC----
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERG---- 373 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 373 (415)
|-.+.-+..+.+++++++..|++.+.+.|+ +..|+.....+...+++++|.+.++..++..+.
T Consensus 431 ------------~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 431 ------------YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 112333356667788888888877777564 457777777788888888888888888877766
Q ss_pred --CCccHHHHHHHHH-hcCchhhHHHHHHHHhhhcc
Q 039757 374 --NGGDYVLMYNILA-GVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 374 --~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~ 406 (415)
++.++..-..+.. =.++++.|.+++++..+.+.
T Consensus 499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc
Confidence 4433332222221 23777777777777665543
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=8.8e-08 Score=86.74 Aligned_cols=387 Identities=14% Similarity=0.086 Sum_probs=217.8
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++....+..|+.-.+.-++.-....|...+......|-++.++.++++..+ - ++..-+.-+..++..+
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~---------~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---V---------APEAREEYIEYLAKSD 183 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---c---------CHHHHHHHHHHHHhcc
Confidence 344445555555554444555556677777777777777788888887772 2 3344566677777888
Q ss_pred CCchHHHHHHHHHHc------CCCCchhhHHHHHHHHHcCCC---hhHHHHHhcccCC--Cch--hhHHHHHHHHHhhCC
Q 039757 83 YPNLGTQLHAVISKV------GFQSHVYVNTALVNMYVSLGF---LKDSSKLFDELPE--RNL--VTWNVMITGLVKWGE 149 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~g~ 149 (415)
++++|.+.+...+.. .-+.+...|.-+-+..++.-+ --....+++.+.. +|. ..|+.|..-|++.|+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 888887777776432 113445556655555554432 2334556666654 343 478999999999999
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHh---------cc-CCCCccCCCch-------HHHHhHHH------------
Q 039757 150 LEYARSLFEEMPC--RNVVSWTGILDGYTR---------MN-RSNGASTEPSE-------ITILAVLP------------ 198 (415)
Q Consensus 150 ~~~a~~~~~~m~~--~~~~~~~~li~~~~~---------~~-~~~~a~~~~~~-------~~~~~ll~------------ 198 (415)
+++|.++|++... -++..++.+.++|.+ .+ ..++....-+. ..+..++.
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 9999999988653 234445555555543 11 00011100000 01111111
Q ss_pred ------------HHhhcCChhHHHHHHhhhhhcCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CCh-
Q 039757 199 ------------AIWQNGAVRNCQLIHGYGEKRGFNAF-----DIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNL- 259 (415)
Q Consensus 199 ------------~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~- 259 (415)
.-...|+..+....|.++++.- .|. -...|..+.+.|-..|+++.|..+|++....+ +.+
T Consensus 344 Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 0122345556666666666541 111 34556677777777777777777777776642 111
Q ss_pred ---hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-----------------hhhHHHHH---HHHccCCc---chHH
Q 039757 260 ---VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-----------------RVTFLSVL---NACSHGGL---HYGC 313 (415)
Q Consensus 260 ---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------------~~~~~~ll---~~~~~~~~---~~~~ 313 (415)
.+|-.-...=.++.+++.|+.++++....--.|. ...|..++ .+|+-... .|..
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2344444444455666777776666543211110 01111111 12111000 1221
Q ss_pred --------------HHHHhHhcCCHHHHHHHHhcCCCC--CcCHH-HHHHHHHHHhh---cCChHHHHHHHHHHHHcccC
Q 039757 314 --------------LVDMLGRAGRLEQAEKIALGIPSE--ITDVV-VRRILLGACSF---HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 314 --------------li~~~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 373 (415)
....+....-++++.+++++-... .|++. .|+..+.-+.+ ....+.|..+|++.++.-||
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 222344556688899999887776 45544 77776665543 34689999999999996665
Q ss_pred -CCc-cHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 374 -NGG-DYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 374 -~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
... .|......=.+.|....|+.++++..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 33344444456788888999988854
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.4e-09 Score=99.14 Aligned_cols=240 Identities=18% Similarity=0.107 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHc-----CC-CCchhh-HHHHHHHHHcCCChhHHHHHhcccCC----------
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKV-----GF-QSHVYV-NTALVNMYVSLGFLKDSSKLFDELPE---------- 131 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~---------- 131 (415)
.++..|...|...|+++.|..++....+. |. .|...+ .+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555888889999999999998887664 21 233333 23355667777777777777766642
Q ss_pred C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHH
Q 039757 132 R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210 (415)
Q Consensus 132 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~ 210 (415)
| -..+++.|...|.+.|++++|...+++..+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~------------------------------------------------ 311 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE------------------------------------------------ 311 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH------------------------------------------------
Confidence 1 123566666677777777777766665531
Q ss_pred HHHhhhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CCC----hhhHHHHHHHHHccCchHHHHH
Q 039757 211 LIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKN----LVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 211 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~li~~~~~~~~~~~A~~ 280 (415)
+++. ..|..++. ...++.++..++..+++++|..++....+. +++ ..+++.|...|...|++++|..
T Consensus 312 -I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 312 -IYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred -HHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 1111 01111112 334556667788888888888888776554 222 2468999999999999999999
Q ss_pred HHHHHHhcC---CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------CcCHH-HHHHHHH
Q 039757 281 NFERMQKVG---LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------ITDVV-VRRILLG 349 (415)
Q Consensus 281 ~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~~~-~~~~l~~ 349 (415)
++++..+.- ..-...-++. .++.+...|.+.++.++|.++|.+...- .|+.. +|..|..
T Consensus 389 ~~k~ai~~~~~~~~~~~~~~~~----------~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 389 LYKKAIQILRELLGKKDYGVGK----------PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HHHHHHHHHHhcccCcChhhhH----------HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 999876541 1111111122 2444778889999999888888654322 55544 8999999
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 039757 350 ACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~ 369 (415)
.|...|++++|.++.+.+..
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 99999999999999998874
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=2.5e-08 Score=90.29 Aligned_cols=365 Identities=9% Similarity=0.022 Sum_probs=241.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
...-.+...|+.++|....+.-. +..+. +.+.|..+.-.+...+++++|.+.|..+...+ +-|...+.-+
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~gl---r~d~~------S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDl 115 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGL---RNDLK------SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDL 115 (700)
T ss_pred hccchhhcccchHHHHHHHHHHh---ccCcc------cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 33334555788888988888887 66666 77888888888888889999999999988876 4566677666
Q ss_pred HHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHH------HHH
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGIL------DGY 175 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li------~~~ 175 (415)
.-.-++.|+++.....-..+.+ | ....|..+..++.-.|+...|..++++..+ ++...+.-.. ...
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 6666677888777776666654 3 455788888888899999999999887762 4444443322 234
Q ss_pred HhccCCCCcc--------CCCchHHHH-hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039757 176 TRMNRSNGAS--------TEPSEITIL-AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246 (415)
Q Consensus 176 ~~~~~~~~a~--------~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (415)
.+.|..++|. ...|...+. .-...+.+.+++++|..++..+... .|.+...|..+..++.+-.+.-++.
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~l 273 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEAL 273 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHH
Confidence 4556656665 122222222 2333457788999999999998888 5645555555666665333333333
Q ss_pred -HHHHHhhhhCCChhhHHHHHHHHHc-cCchHHHHHHHHHHHhcCCCCChhhHHHHHHH-------------HccC----
Q 039757 247 -KLFEDISVERKNLVSWTSIISGFAM-HGMGKAAVENFERMQKVGLKPNRVTFLSVLNA-------------CSHG---- 307 (415)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-------------~~~~---- 307 (415)
.+|....+..|....-..+--.... ..-.+....++..+.+.|+.+-...+.++..- +.+.
T Consensus 274 k~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 274 KALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccc
Confidence 6666665552221111111111111 12233344555556666554433333322211 1110
Q ss_pred Cc-----------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 308 GL-----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV-VRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 308 ~~-----------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
|. ++-.++..|-..|+++.|...++......|+.. .|..=.+.+...|+.+.|..++++..+
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 00 455688889999999999999998888766544 666667788899999999999999999
Q ss_pred cccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 370 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+.+|...-..-+....++.+.++|.++.....+.|.
T Consensus 434 lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 434 LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9888776666777888899999999999998888775
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=6.1e-10 Score=95.66 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
.+...|++++|.+++++- .+.......+..|.+.++++.|.+.++.|.+. .+..+...+..+ .
T Consensus 111 i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~a----------w 173 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEA----------W 173 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHH----------H
T ss_pred HHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHH----------H
Confidence 334444555554444332 22333334444455555555555555555442 122223333332 2
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch-h
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY-V 392 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 392 (415)
+..+.-.+.+.+|..+|+++..+ .+++.+.+.+..++...|++++|.+++++..+.++.++.+...++.+..-.|+. +
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 22222223445555555554444 334444444444555555555555555555544444444444454444444444 3
Q ss_pred hHHHHHHHHhh
Q 039757 393 DAERLRRVMDE 403 (415)
Q Consensus 393 ~A~~~~~~m~~ 403 (415)
.+.+++.++..
T Consensus 254 ~~~~~l~qL~~ 264 (290)
T PF04733_consen 254 AAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=9.1e-10 Score=95.96 Aligned_cols=195 Identities=10% Similarity=-0.048 Sum_probs=141.8
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGF 269 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 269 (415)
..+......+...|+.+.|...|++..+. .|.++..|+.+...+...|++++|.+.|++..+..| +..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44666667788899999999999999887 577899999999999999999999999999988766 467788888889
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILL 348 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 348 (415)
...|++++|.+.|++..+. .|+...... ........++.++|...|++.... .|+...+ .+
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~--------------~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~- 204 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRAL--------------WLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NI- 204 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHH--------------HHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HH-
Confidence 9999999999999998874 565542111 111134567899999999654433 2222222 22
Q ss_pred HHHhhcCChHHHHHHHHHHH-------HcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 349 GACSFHGNVEMGERVTRKVL-------EMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
.....|+...+ +.++.+. +..+....+|..++..+...|++++|...|++..+.++.
T Consensus 205 -~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 205 -VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred -HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22345555444 3444444 223335578999999999999999999999998877754
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=2.5e-08 Score=92.04 Aligned_cols=358 Identities=11% Similarity=-0.001 Sum_probs=229.4
Q ss_pred hccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 039757 17 TTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK 96 (415)
Q Consensus 17 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (415)
+.+.+.-|+..|..+.-++...|+++.+.+.|++.. ..-+. ....|..+...+...|.-..|..+++....
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~---~~~~~------~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL---PFSFG------EHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Hhhhh------hHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 444466788888888888888999999999998887 44444 567788888888888888888888877654
Q ss_pred cCCCC-chhhHHHHHHHHH-cCCChhHHHHHhcccCC--------CchhhHHHHHHHHHhh-----------CCHHHHHH
Q 039757 97 VGFQS-HVYVNTALVNMYV-SLGFLKDSSKLFDELPE--------RNLVTWNVMITGLVKW-----------GELEYARS 155 (415)
Q Consensus 97 ~g~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~a~~ 155 (415)
....| |...+...-..|. +.+.+++++.+-..... .....|-.+.-+|... ....++++
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 43223 3333433334444 34556665555444432 2334455554444321 22445666
Q ss_pred HHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHH
Q 039757 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235 (415)
Q Consensus 156 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (415)
.+++..+.+ +.|......+.--++..++++.|.+..++..+.+... ++..|..|.-.
T Consensus 466 ale~av~~d----------------------~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~-~~~~whLLALv 522 (799)
T KOG4162|consen 466 ALEEAVQFD----------------------PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD-SAKAWHLLALV 522 (799)
T ss_pred HHHHHHhcC----------------------CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Confidence 666665433 1222333334444567788999999999998874333 88889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc---------------------CC---
Q 039757 236 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV---------------------GL--- 290 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------------g~--- 290 (415)
+...+++.+|+.+.+...+.-+ |......-+..-..-++.++|+.....+... |+
T Consensus 523 lSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccC
Confidence 9999999999999988776522 2222111122222233333333322222110 00
Q ss_pred ----CCChhhHHHHHH----------------------------------------HHccCCc-----------------
Q 039757 291 ----KPNRVTFLSVLN----------------------------------------ACSHGGL----------------- 309 (415)
Q Consensus 291 ----~p~~~~~~~ll~----------------------------------------~~~~~~~----------------- 309 (415)
.-...++..+.. .+...+.
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 000111111111 0111111
Q ss_pred ---chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHH--HHHHHHHcccCCCccHHHHHH
Q 039757 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGER--VTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 310 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~ 383 (415)
.|......+...|.+++|.+.|.......| ++.+.+++...+.+.|+...|.. ++..+.+.+|.++..|..++.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 344455666777888899888876665546 45588999999999999888888 999999999999999999999
Q ss_pred HHHhcCchhhHHHHHHHHhhhcc
Q 039757 384 ILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+.+.|+.+.|.+.|....+...
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhcc
Confidence 99999999999999988776543
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1e-08 Score=87.87 Aligned_cols=311 Identities=11% Similarity=-0.019 Sum_probs=217.6
Q ss_pred chHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC
Q 039757 23 HHTLLFNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100 (415)
Q Consensus 23 p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 100 (415)
|+.......+.+++. .++...|...+-.+.. ..-+ |. |......+.+.+...|+.+.|...|+......
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~--~~~l---r~--NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-- 262 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHD--NTTL---RC--NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-- 262 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHh--hccC---Cc--cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--
Confidence 444444444544433 5555555555544431 2222 32 77778889999999999999999999886643
Q ss_pred Cc-hhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 039757 101 SH-VYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176 (415)
Q Consensus 101 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 176 (415)
|+ ........-.+.+.|+.+....+...+-. .....|-.-........+++.|+.+-++..+.+..
T Consensus 263 py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r---------- 332 (564)
T KOG1174|consen 263 PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR---------- 332 (564)
T ss_pred hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc----------
Confidence 43 33333334456678888888877776653 23344555556666788999999999888654321
Q ss_pred hccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-
Q 039757 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE- 255 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 255 (415)
+...+-.-...+...++++.|.-.|+..... -|.+..+|.-|+++|...|++.+|.-+-+.....
T Consensus 333 ------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 333 ------------NHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred ------------cchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 2222223334556788888888888888876 5779999999999999999999998877765554
Q ss_pred CCChhhHHHHH-HHHH-ccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 256 RKNLVSWTSII-SGFA-MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 256 ~~~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
+.+..+...+. ..+. ...--++|.++++.-.. +.|+-.-- .+.+...+...|+.+.++.+++.
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~A-------------V~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPA-------------VNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHH-------------HHHHHHHHHhhCccchHHHHHHH
Confidence 34555555542 2222 22334788888888665 35654331 22366678889999999999998
Q ss_pred CCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHH
Q 039757 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381 (415)
Q Consensus 334 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 381 (415)
.....||....+.|.+.+...+.+.+|++.|..+++.+|.+..+...|
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 888789999999999999999999999999999999999887665544
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.7e-08 Score=88.03 Aligned_cols=209 Identities=10% Similarity=-0.139 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
..|..+...+.+.|++++|...|++..+.+ +.+...++.+...+...|+++.|...|+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR----------------------PDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 346666677777777777777777765432 2244566666677777777777777777
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
...+. .|.+..++..+..++...|++++|.+.|++.....|+..........+...++.++|...|++.... ..|+.
T Consensus 123 ~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~ 199 (296)
T PRK11189 123 SVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQ 199 (296)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccc
Confidence 77765 5768888999999999999999999999999887665432222233345577899999999775543 23332
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHH--HHHHHhcCCCC----Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ--AEKIALGIPSE----IT-DVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~~~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
..+ . +. ....|+..+ +.+.+...... .| ....|..+...+...|++++|+..|+++
T Consensus 200 ~~~-~--------------~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 200 WGW-N--------------IV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred cHH-H--------------HH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 221 1 11 222444433 33333222222 12 3457889999999999999999999999
Q ss_pred HHcccCCC-ccHHHHHHHH
Q 039757 368 LEMERGNG-GDYVLMYNIL 385 (415)
Q Consensus 368 ~~~~~~~~-~~~~~l~~~~ 385 (415)
.+.+|++. ..-..++...
T Consensus 263 l~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 263 LANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHhCCchHHHHHHHHHHHH
Confidence 99998643 3333344433
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.8e-07 Score=77.01 Aligned_cols=271 Identities=10% Similarity=-0.024 Sum_probs=179.7
Q ss_pred CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhh---HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 039757 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVT---WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175 (415)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 175 (415)
++.++.....+.+++...|+.++|+..|+...--|+.+ .......+.+.|+.+....+...+-..+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~----------- 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV----------- 296 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-----------
Confidence 33445555556666666666666666665544322211 1112222334455554444444432111
Q ss_pred HhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
......|..-+......++++.|..+-++.++. .|.+...+-.-...+...|+.++|.=.|+.....
T Consensus 297 -----------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 297 -----------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred -----------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 122233444444556778888888888888776 4556777766677888999999999999998887
Q ss_pred CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 256 RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 256 ~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
.| +..+|..|+.+|...|++.+|..+-+..... +..+..+... +.+ .+... .-.--++|.++++.-
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL-~g~----------~V~~~-dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL-FGT----------LVLFP-DPRMREKAKKFAEKS 430 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh-hcc----------eeecc-CchhHHHHHHHHHhh
Confidence 55 7889999999999999999998776664432 2223333322 111 11112 122347899999887
Q ss_pred CCCCcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 335 PSEITDVV-VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 335 ~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
....|+-. ..+.+...|...|..++++.++++.+...+ +......|++.+...+.+.+|++.|....+.+.+
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 76667544 667788889999999999999999887654 5678899999999999999999999888776654
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.3e-08 Score=89.10 Aligned_cols=255 Identities=11% Similarity=-0.087 Sum_probs=187.0
Q ss_pred CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHH
Q 039757 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPA 199 (415)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~ 199 (415)
.++.....-..-+...+++.+..++++...+.|+ ..+..-|.++...|+..+-. .+-.+.+|-.+.--
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 4455555556666677778888877777765433 33444455555555544433 34456678888887
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A 278 (415)
|...|+..+|++.|.+.... +|.-...|-.+.+.|+..|.-|.|...+...-+. +...-.+--+.--|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 88889999999999988876 5667888989999999999999999988877665 22333344455668888999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------Cc-CHHHHHHHHHH
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------IT-DVVVRRILLGA 350 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~ 350 (415)
.+.|.+... +.|+...... .+.-.....+.+.+|..+|+..... .+ -..+++.|..+
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~-------------Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLH-------------ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHHh--cCCCcchhhh-------------hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 999977655 5676654322 2333455678888998888765422 12 34467888889
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
|.+.+.+++|+..+++.+...+.+..++..++-.|.-.|+++.|.+.|.+...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999887653
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=3.2e-08 Score=78.48 Aligned_cols=200 Identities=12% Similarity=-0.022 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
+...|.-+|...|+...|..-+++..+.| +-+..++..+...|.+.|..+.|.+.|+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----------------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----------------------PSYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------cccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 46667778888899999988888887655 23445566666777777888888888888
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
..+. .|.+..+.|.....+|..|++++|...|++....+ .-..+|..+.-+..+.|+.+.|...|++-.+. .|
T Consensus 95 Alsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp 170 (250)
T COG3063 95 ALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DP 170 (250)
T ss_pred HHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--Cc
Confidence 8776 56677888888888888888888888888877762 23456777777888888888888888887764 23
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
+...- .-.+.....+.|++-.|...++..... .++..+.-..|+.-...||.+.+-++=..+.+..
T Consensus 171 ~~~~~-------------~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 171 QFPPA-------------LLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred CCChH-------------HHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 32211 112555567778888887777776665 4566666666776777777777777766666666
Q ss_pred cCC
Q 039757 372 RGN 374 (415)
Q Consensus 372 ~~~ 374 (415)
|.+
T Consensus 238 P~s 240 (250)
T COG3063 238 PYS 240 (250)
T ss_pred CCc
Confidence 553
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=6e-07 Score=81.16 Aligned_cols=305 Identities=10% Similarity=-0.022 Sum_probs=192.0
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCC-CCchh-hHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHH--
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVY-VNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNV-- 139 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~-- 139 (415)
....|..+...+...|+++.+.+.+....+... .++.. ........+...|++++|.+++++..+ | |...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~ 84 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHL 84 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhH
Confidence 445677777777778888887777777654321 22221 122233456678999999999988764 4 3334432
Q ss_pred -HHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 140 -MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 140 -li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
........+..+.+.+.++.. .++ .+........+...+...|+++.|...++...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~---------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APE---------------------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcC---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111112245555566655542 222 122334445566677889999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---Ch--hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC
Q 039757 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NL--VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 293 (415)
. .|.+...+..+...+...|++++|...+++.....| +. ..|..+...+...|++++|..++++.... .|.
T Consensus 143 ~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~--~~~ 218 (355)
T cd05804 143 L--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP--SAE 218 (355)
T ss_pred h--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--ccC
Confidence 7 576888899999999999999999999999877532 22 23567888999999999999999998643 231
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH------HhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI------ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
........... .++.-+...|..+.+.+. ...................++...|+.+.|...++.+
T Consensus 219 ~~~~~~~~~~~--------~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 219 SDPALDLLDAA--------SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred CChHHHHhhHH--------HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22222110100 022223334433222222 1111111011122235677788999999999999998
Q ss_pred HHcccC---------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 368 LEMERG---------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 368 ~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
...... ..........++.+.|++++|.+.+.+.....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 764422 23344455566789999999999998877654
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=5.5e-09 Score=86.83 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=179.1
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCC
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 183 (415)
-+.+..+|.+.|.+.+|++.|+.-.+ |-+.||-.|-++|.+..+...|+.+|.+-.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--------------------- 284 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--------------------- 284 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh---------------------
Confidence 35677888899999999998887654 7778888899999999999999998887764
Q ss_pred ccCCCchHH-HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhh
Q 039757 184 ASTEPSEIT-ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVS 261 (415)
Q Consensus 184 a~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 261 (415)
..|...| .....+.+...++.+.+.++|+...+. .|.+......+...|.-.++++-|.+.|+++..-+ .+...
T Consensus 285 --~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speL 360 (478)
T KOG1129|consen 285 --SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPEL 360 (478)
T ss_pred --cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHH
Confidence 2233333 345566677788888999999988887 46677777777888888899999999999988875 46778
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNR---VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 338 (415)
|+.+.-+|.-.+++|-++.-|.+....--.|+. +.|| |.......|++..|.+.|+-.....
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN---------------lg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN---------------LGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc---------------cceeEEeccchHHHHHHHHHHhccC
Confidence 999999999999999999888887765444443 2333 5556677899999999998776653
Q ss_pred c-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 339 T-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 339 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
| +...++.|.-.-.+.|++++|..+++.+.+..|.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 3 5568888888888999999999999999888776
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=3.8e-08 Score=78.10 Aligned_cols=196 Identities=14% Similarity=-0.007 Sum_probs=126.6
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
...+.-.|.+.|+...|..-+++.++. .|.+..++..+...|.+.|..+.|.+-|++.....| +....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 444555667777777777777777776 566677777777777777777777777777666644 45666777777777
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGA 350 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 350 (415)
.|++++|...|++.... |+-.+-.. +|..+.....+.|+.+.|...|++.....| ...+.-.+.+.
T Consensus 116 qg~~~eA~q~F~~Al~~---P~Y~~~s~----------t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 116 QGRPEEAMQQFERALAD---PAYGEPSD----------TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred CCChHHHHHHHHHHHhC---CCCCCcch----------hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 77777777777776653 22111100 122344445667777777777766555533 33456666667
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
....|++..|..+++.....+....+.....|+.--+.|+.+.|.++=.++.+
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777776666666666666666777777766666555443
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.2e-07 Score=78.41 Aligned_cols=360 Identities=11% Similarity=0.049 Sum_probs=203.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
+.-+..+.|+..|+.+++.-. ..+-+ - ...+-.-+..++.+.|++++|..++..+.+.. .|+...+..|.-
T Consensus 29 Ledfls~rDytGAislLefk~---~~~~E--E---E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAc 99 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL---NLDRE--E---EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLAC 99 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh---ccchh--h---hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHH
Confidence 566777899999999998776 44333 1 11233334556678999999999999987754 567777777777
Q ss_pred HHHcCCChhHHHHHhcccCC-C--------------chhh--------------HHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 112 MYVSLGFLKDSSKLFDELPE-R--------------NLVT--------------WNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~-~--------------~~~~--------------~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
++.-.|.+.+|..+-....+ | |..- --+|....-..-.+.+|++++++...
T Consensus 100 c~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778999999998887764 1 1111 11233333344568889999988764
Q ss_pred CCh--hHHHHHH-HHHHhccCCCCcc--------CCCchH-HHHhHHHHHhh----------------c-----------
Q 039757 163 RNV--VSWTGIL-DGYTRMNRSNGAS--------TEPSEI-TILAVLPAIWQ----------------N----------- 203 (415)
Q Consensus 163 ~~~--~~~~~li-~~~~~~~~~~~a~--------~~~~~~-~~~~ll~~~~~----------------~----------- 203 (415)
.+. ...|.-+ -+|.+..-++-+. ..||.. ..+.......+ .
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 322 2222211 2222222222211 122211 11111111111 1
Q ss_pred --------CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHH-----HH
Q 039757 204 --------GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG-----FA 270 (415)
Q Consensus 204 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~-----~~ 270 (415)
.+-+.|.+++--+.+. -+...-.|+-.|.+.+++++|..+.+++....|-......+..+ ..
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~-----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH-----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh-----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1223333333333322 23444556667888888888888887776532322222222111 11
Q ss_pred ccCchHHHHHHHHHHHhcCCC----C----------------ChhhHHHHHHHHccCCcch-HHHHHHhHhcCCHHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLK----P----------------NRVTFLSVLNACSHGGLHY-GCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~----p----------------~~~~~~~ll~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 329 (415)
......-|.+.|+-.-..+.. | |..+|..-+.+|.-+.+.+ -.+..+++..|.+.+|++
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence 112334455555444333222 1 2223333334444443333 247888999999999999
Q ss_pred HHhcCCCC-CcCHHHHH-HHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 330 IALGIPSE-ITDVVVRR-ILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 330 ~~~~~~~~-~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+|-.+... ..+..+|. .|.++|.+.++++.|..++-+ .+.+ .......+..-|.+.+.+--|.+.|+++...+
T Consensus 415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 99877654 23555664 456778899999998766543 3333 22344456667888999888888888887666
Q ss_pred ccc
Q 039757 406 ALK 408 (415)
Q Consensus 406 ~~~ 408 (415)
..|
T Consensus 492 P~p 494 (557)
T KOG3785|consen 492 PTP 494 (557)
T ss_pred CCc
Confidence 543
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=4.1e-08 Score=84.48 Aligned_cols=257 Identities=13% Similarity=0.063 Sum_probs=163.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++.-...-..|.......+...+...++-+.++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 344556677777776555 2222212234445556688888898887776665555566666655555554435556666
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
.-+++...... ...+..........+...|+++.|.+++... .+.......+.
T Consensus 87 ~~l~~~~~~~~--------------------~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vq 139 (290)
T PF04733_consen 87 EELKELLADQA--------------------GESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQ 139 (290)
T ss_dssp HHHHHCCCTS-----------------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHH
T ss_pred HHHHHHHHhcc--------------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHH
Confidence 66655442210 1122222233334456788999888887653 26777788899
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCChhh---HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcch
Q 039757 235 TYAKCGCIFSALKLFEDISVERKNLVS---WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 311 (415)
+|.+.++++.|.+.++.|.+...|... ..+.+..+...+.+++|..+|+++.+. ..++..+.+.
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng------------ 206 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG------------ 206 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH------------
Confidence 999999999999999999886555433 223333333445799999999998764 4566655554
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHcccCC
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNV-EMGERVTRKVLEMERGN 374 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~ 374 (415)
+..+....|++++|.+++++.....| ++.+...++.+....|+. +.+.+++.++....|..
T Consensus 207 --~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 207 --LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp --HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred --HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 55558889999999999988766634 566777777777777777 77888999988877653
No 79
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5e-08 Score=87.06 Aligned_cols=280 Identities=11% Similarity=-0.018 Sum_probs=197.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhh
Q 039757 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKW 147 (415)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 147 (415)
...-..-|...++++...++.+...+.. ++....+..-|.++...|+-.+-..+=..+.+ | ...+|-++.--|.-.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 3334444556667777777777776653 45555566566666666665554444444443 3 345677777777777
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 148 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
|+.++|.+.|.+...-| +.-...|.....+++-.+..|.|...|....+.-.-..-+.
T Consensus 326 ~k~seARry~SKat~lD----------------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD----------------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred cCcHHHHHHHHHHhhcC----------------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 77777777777664322 22234567777788888888888888877776521111333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc--CCCCChhhHHHHHHHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNAC 304 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~ 304 (415)
.| +.--|.+.++.+.|.++|.+....-| |+...+-+.-.....+.+.+|..+|+..... .+.+...+|..+
T Consensus 384 LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~---- 457 (611)
T KOG1173|consen 384 LY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT---- 457 (611)
T ss_pred HH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH----
Confidence 44 44558889999999999999887744 7778888888888889999999999887632 233333345543
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
++.|.+.|.+.+++++|+..++..... ..+..++.++.-.|...|+++.|.+.|.+.+...|.+..+-..|..
T Consensus 458 ------~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 458 ------LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred ------HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 445899999999999999999877665 3488899999999999999999999999999999887655444444
Q ss_pred HH
Q 039757 384 IL 385 (415)
Q Consensus 384 ~~ 385 (415)
+.
T Consensus 532 ai 533 (611)
T KOG1173|consen 532 AI 533 (611)
T ss_pred HH
Confidence 33
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.5e-07 Score=77.59 Aligned_cols=293 Identities=12% Similarity=0.049 Sum_probs=172.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHH
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
|.+++..+.+..+++.|++++..-. +..++ +....+.|..+|-+..++..|-+.++++-.. .|...-|.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~---Er~p~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSEL---ERSPR------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH---hcCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 5566666777777788888777766 45444 6667777777777777777788888777554 34443333
Q ss_pred H-HHHHHHcCCChhHHHHHhcccCC-CchhhHHHHHHH--HHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCC
Q 039757 108 A-LVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITG--LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 108 ~-li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 183 (415)
. -...+.+.+.+.+|+++...|.+ ++...-..-+.+ .-..+++..+..++++....+
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------------------- 142 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------------------- 142 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-------------------
Confidence 2 23455567777777777777765 222111111111 123456666666666664211
Q ss_pred ccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-C-Chhh
Q 039757 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-K-NLVS 261 (415)
Q Consensus 184 a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~ 261 (415)
+..+.+...-...+.|+++.|.+-|+...+-+ - ....
T Consensus 143 -----------------------------------------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 143 -----------------------------------------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred -----------------------------------------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH
Confidence 22222222223334455555555555444431 1 1223
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCC-------------CCh--------hhHHHHHHHHccCCcchHHHHHHhHh
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLK-------------PNR--------VTFLSVLNACSHGGLHYGCLVDMLGR 320 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-------------p~~--------~~~~~ll~~~~~~~~~~~~li~~~~~ 320 (415)
||.-+ +..+.|+++.|++...+++.+|++ ||. ..-+.++.+ +|.-...+.+
T Consensus 182 YniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA-------fNLKaAIeyq 253 (459)
T KOG4340|consen 182 YNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA-------FNLKAAIEYQ 253 (459)
T ss_pred HHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH-------hhhhhhhhhh
Confidence 33322 233444555555555555554432 111 111122222 3334445778
Q ss_pred cCCHHHHHHHHhcCCCC---CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 321 AGRLEQAEKIALGIPSE---ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.|+++.|.+.+-.|+.+ ..|++|...+.-.- ..+++.+..+-++-+++.+|-+.++|..++-.||+..-++-|..+
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 99999999999999887 55777766554322 345677777778888888888999999999999999999999888
Q ss_pred HHH
Q 039757 398 RRV 400 (415)
Q Consensus 398 ~~~ 400 (415)
+.+
T Consensus 333 LAE 335 (459)
T KOG4340|consen 333 LAE 335 (459)
T ss_pred Hhh
Confidence 765
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=9.4e-08 Score=88.33 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=85.0
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...|...|++++|++..++.....|+ +..|..-.+.+-..|++.+|.+.++.+.+.+..|...-+..+..+.++|+.+
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 667788999999999999988877675 5688888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|.+++....+.+.
T Consensus 280 ~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 280 EAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhhcCCCC
Confidence 99999999888776
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=1.5e-06 Score=78.54 Aligned_cols=303 Identities=11% Similarity=-0.020 Sum_probs=184.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD-SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
..|..+...+...|+.+.+...+....+ ..... + + ..........+...|+++.|.+.++...+.. +.+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~ 78 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQ---ALAAR-A---TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLL 78 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH---HhccC-C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHH
Confidence 4566666777778888888777777763 22220 1 2 2223333445677899999999999988764 33444
Q ss_pred hHHH---HHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 105 VNTA---LVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 105 ~~~~---li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
.+.. +.......+..+.+.+.++.... |+ ......+...+...|++++|...+++..+.+
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------------- 144 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------------- 144 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4442 22222234566667776665332 22 3344566678889999999999999987533
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI--RVSNCLIDTYAKCGCIFSALKLFEDISVER 256 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 256 (415)
+.+...+..+...+...|++++|...++........+++. ..|..+...+...|++++|.++|++.....
T Consensus 145 --------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 145 --------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred --------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 2234556677778888999999999999888763222232 345578889999999999999999986543
Q ss_pred CChhhH----H--HHHHHHHccCchHHHHHH--HHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH
Q 039757 257 KNLVSW----T--SIISGFAMHGMGKAAVEN--FERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 257 ~~~~~~----~--~li~~~~~~~~~~~A~~~--~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A 327 (415)
|..... + .++.-+...|..+.+..+ +........ |. ...+..+ .....+...|+.++|
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~------------~~a~~~~~~~~~~~a 283 (355)
T cd05804 217 AESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDL------------HAALALAGAGDKDAL 283 (355)
T ss_pred cCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHH------------HHHHHHhcCCCHHHH
Confidence 311211 1 223333344433333332 211111111 11 1112211 155667889999999
Q ss_pred HHHHhcCCCC-Cc---------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 328 EKIALGIPSE-IT---------DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 328 ~~~~~~~~~~-~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
..+++.+... .. .+...-...-++...|+.++|.+.+.......
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9998776543 11 11122222334568999999999999988755
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.4e-06 Score=78.53 Aligned_cols=350 Identities=9% Similarity=-0.014 Sum_probs=191.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
++.+.+.|++++|.....++. ..++. +...+..=+-+..+.+.++.|+.+.+.-.. ...+...+---..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil---~~~pd------d~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKIL---SIVPD------DEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAY 87 (652)
T ss_pred HHHhccchHHHHHHHHHHHHH---hcCCC------cHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHH
Confidence 456778999999999999998 66655 666666667778888999888855543211 1111111112234
Q ss_pred HHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHH------hccCCCCcc
Q 039757 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT------RMNRSNGAS 185 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~------~~~~~~~a~ 185 (415)
+..+.+..|+|+..++...+.+..+...-...+-+.|++++|+++|+.+.+.+...+...+.+-+ ..++..+..
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 44588999999999997666666566677778889999999999999997655444333222211 111111111
Q ss_pred CCCchHHHHhHH---HHHhhcCChhHHHHHHhhhhhcCC--------CCCCH-----HHHHHHHHHHHhcCCHHHHHHHH
Q 039757 186 TEPSEITILAVL---PAIWQNGAVRNCQLIHGYGEKRGF--------NAFDI-----RVSNCLIDTYAKCGCIFSALKLF 249 (415)
Q Consensus 186 ~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~-----~~~~~li~~~~~~g~~~~A~~~~ 249 (415)
....+.+|..+. -.+...|++..|++++....+.+. ...+. .+.--|.-.+...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 111122333222 234556666666666666622110 00011 11122333455566666666666
Q ss_pred HHhhhhC-CChh----hHHHHHHHHHccCchH-HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcch--HHHHHHhHhc
Q 039757 250 EDISVER-KNLV----SWTSIISGFAMHGMGK-AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY--GCLVDMLGRA 321 (415)
Q Consensus 250 ~~~~~~~-~~~~----~~~~li~~~~~~~~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~~li~~~~~~ 321 (415)
....... +|.. .-|.|+..-....-++ .++..++..... ........+...- -...+ +.++.+| .
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~---l~~~~l~~Ls~~q--k~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK---LAEFLLSKLSKKQ--KQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH---hHHHHHHHHHHHH--HHHHHHHHHHHHHH--h
Confidence 6665552 2321 2233332222221111 111122211110 0000000000000 00011 2233333 4
Q ss_pred CCHHHHHHHHhcCCCCCcCHHHHHHHHHHHh-hcCChHHHHHHHHHHHHcccCC-CccHHHHHHHHHhcCchhhHHHHHH
Q 039757 322 GRLEQAEKIALGIPSEITDVVVRRILLGACS-FHGNVEMGERVTRKVLEMERGN-GGDYVLMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 399 (415)
+..+.+.++-.......|....-..+..+.. +...+.++.+++....+..|.+ ......++......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5567777777777766565544444444433 2235788888888888877774 4566677888899999999999998
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=1.3e-06 Score=73.48 Aligned_cols=315 Identities=12% Similarity=0.041 Sum_probs=197.5
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHcCCCCch-hhHHHHHHHHHcCCChhHHHHHhcccCC--Cchh-hHHHHHHHHHhhCC
Q 039757 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHV-YVNTALVNMYVSLGFLKDSSKLFDELPE--RNLV-TWNVMITGLVKWGE 149 (415)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~ 149 (415)
+.+.+...|++..|+.-|...++-. |+. .++-.-...|...|+-..|+.=|....+ ||.. .-..-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 3444445555555555555554422 221 1122223445555555555554444443 3321 11122234556666
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc--hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS--EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
+++|..-|+...+.++. -+....++.+ ..+. .......+..+...|+...|+.....+++. .|.+..
T Consensus 122 le~A~~DF~~vl~~~~s-~~~~~eaqsk--------l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~ 190 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-NGLVLEAQSK--------LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDAS 190 (504)
T ss_pred HHHHHHHHHHHHhcCCC-cchhHHHHHH--------HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhH
Confidence 66666666665532210 0000011110 0111 112334455566788888999988888886 677999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.|..-..+|...|++..|+.=++.+.+.. -+..++.-+-..+...|+.+.++...++-.+ +.||....-..-...-+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHH
Confidence 99999999999999999998887776653 4566677777788888999999999888877 46776554332111100
Q ss_pred CCcchHHH--HHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHH
Q 039757 307 GGLHYGCL--VDMLGRAGRLEQAEKIALGIPSEITD-----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379 (415)
Q Consensus 307 ~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 379 (415)
...+| +....+.++|-++....+...+..|. ...+..+-.++...+++.+|++...++++..|.+..++.
T Consensus 269 ---v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 ---VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 00011 22345567787887777766555444 234556666777889999999999999999999999999
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.-..+|.-...|++|+.-++...+.+-
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999988876553
No 85
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.5e-07 Score=73.11 Aligned_cols=189 Identities=11% Similarity=0.019 Sum_probs=140.9
Q ss_pred HHHhhcCChhHH-HHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchH
Q 039757 198 PAIWQNGAVRNC-QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 198 ~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 276 (415)
......++.+.. ..+.+++....... +......-...|++.|++++|.+..+.. .+......=...+.+..+.+
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~s-n~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGS-NLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFD 154 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccch-hHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHH
Confidence 333334444333 34445555443222 3333444456789999999999999873 33444444455677888999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcC
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHG 355 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~ 355 (415)
-|.+.+++|.+. -+..|.+-+.++ .+......+++.+|.-+|+++.++ .|+..+.+-...++...|
T Consensus 155 ~A~~~lk~mq~i---ded~tLtQLA~a----------wv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 155 LAEKELKKMQQI---DEDATLTQLAQA----------WVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHcc---chHHHHHHHHHH----------HHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 999999999984 677888887777 455566677899999999999997 889999999999999999
Q ss_pred ChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH-HHHHHHhhh
Q 039757 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE-RLRRVMDER 404 (415)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 404 (415)
++++|..+++.++...+.++.+...++..-.-.|+-.++. +.+.+....
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999999999999999999998888888886664 445555443
No 86
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.97 E-value=3.4e-08 Score=92.48 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC----chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER----NLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
.++..+...|+.|+..||..+|.-||..|+++.|- +|.-|.-. +...++.++.+...+++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677788999999999999999999999999998 88888642 4567888998888888877665 788
Q ss_pred hhHHHHHHHHHHhccCCCC
Q 039757 165 VVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~ 183 (415)
..||+.|..+|.+.|+...
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 8899999999998887654
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.2e-06 Score=76.38 Aligned_cols=210 Identities=12% Similarity=0.036 Sum_probs=152.8
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHH-----
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSII----- 266 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li----- 266 (415)
...+.++..+..+++.+.+.+....... .+..-++....+|...|.+.++...-++..+.+... .-|+.+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5567777788889999999999988874 377777888889999999888888777766653322 2233333
Q ss_pred --HHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc-----------chHHHHHHhHhcCCHHHHHHHHhc
Q 039757 267 --SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-----------HYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 267 --~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
.+|.+.++++.|...|.+.......|+..+=.....--.+... ....-...+.+.|++..|++.|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3556677899999999887765555555443322211000000 011124556778999999999988
Q ss_pred CCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 334 IPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 334 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++...| |...|..-.-+|.+.|++..|++=.+..++.+|+....|..-+.++....+|++|.+.|.+..+.+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777755 667888888889999999999999999999988888888888888888899999999988776655
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2e-06 Score=72.75 Aligned_cols=315 Identities=13% Similarity=0.104 Sum_probs=185.5
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHH-HHHHhcCC
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI-RTCVTLSY 83 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~-~~~~~~~~ 83 (415)
-....++++.+...- .|.. +|....-..-.+++|++++.+.. ..+ | .-...|.-+ -+|.+..-
T Consensus 137 Ek~~~~fh~~LqD~~---EdqL---SLAsvhYmR~HYQeAIdvYkrvL---~dn----~---ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL---EDQL---SLASVHYMRMHYQEAIDVYKRVL---QDN----P---EYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHHhhhH---HHHH---hHHHHHHHHHHHHHHHHHHHHHH---hcC----h---hhhhhHHHHHHHHHhcch
Confidence 344555555554322 2222 23333333446789999999988 333 2 334444433 34567777
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHc--CCChhH--HHHHhcccCC--------------------------C-
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVS--LGFLKD--SSKLFDELPE--------------------------R- 132 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~--a~~~~~~~~~--------------------------~- 132 (415)
++-+.+++..-.+. ++.+....|.......| .|+..+ -..+.+...+ |
T Consensus 201 ydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred hhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH
Confidence 78888888777654 23333444433333332 232211 1122222211 1
Q ss_pred ----chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHH-----HHhhc
Q 039757 133 ----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP-----AIWQN 203 (415)
Q Consensus 133 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~-----~~~~~ 203 (415)
=+..--.|+--|.+.+++.+|..+.+++...+ |-+.....+.. -....
T Consensus 280 L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Ptt-----------------------P~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 280 LMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTT-----------------------PYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHhhChHhhhhheeeecccccHHHHHHHHhhcCCCC-----------------------hHHHHHHHHHHHHhhhhcCcH
Confidence 12233345555778888888888888875433 22222222222 22223
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
....-|.+.|+..-..+..-.+..-..++..++.-..++++....++.+..-=. |-..--.+.++++..|++.+|+++|
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 345567777777766666555556667777788888888888888888776522 2222234778888899999999998
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHH
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 362 (415)
-+.....+ -|..+|.+++.-| |.+.++.+.|.+++-.+....-.......+..-|.+.+++--|.+
T Consensus 417 ~~is~~~i-kn~~~Y~s~LArC-------------yi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 417 IRISGPEI-KNKILYKSMLARC-------------YIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred hhhcChhh-hhhHHHHHHHHHH-------------HHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654322 3566776665544 889999999998887665431122234455566888888888888
Q ss_pred HHHHHHHcccC
Q 039757 363 VTRKVLEMERG 373 (415)
Q Consensus 363 ~~~~~~~~~~~ 373 (415)
.|+.+...+|.
T Consensus 483 AFd~lE~lDP~ 493 (557)
T KOG3785|consen 483 AFDELEILDPT 493 (557)
T ss_pred hhhHHHccCCC
Confidence 88888777765
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=1.3e-07 Score=79.92 Aligned_cols=169 Identities=11% Similarity=-0.013 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh--
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT-- 296 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-- 296 (415)
+.....+..++..+...|++++|...|+++....|+. ..+..+..++...|++++|...++++.+. .|+...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 3366777778888889999999999999887764532 35677888889999999999999998875 344332
Q ss_pred HHHHHHHHccCCcchHHHHHHhH--------hcCCHHHHHHHHhcCCCCCcCHH-HH-----------------HHHHHH
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLG--------RAGRLEQAEKIALGIPSEITDVV-VR-----------------RILLGA 350 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~ 350 (415)
+.... +...+. ..|+.++|.+.++.+....|+.. .+ ..+...
T Consensus 108 ~a~~~------------~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 108 YAYYL------------RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred HHHHH------------HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 222233 33788999999988876655432 22 134556
Q ss_pred HhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+.|++++|+..++.+.+..|.+ ...+..++.++...|++++|..+++.+....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 788999999999999999987653 4688999999999999999999999887654
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.4e-06 Score=77.02 Aligned_cols=364 Identities=11% Similarity=0.029 Sum_probs=207.8
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
+++.+.|.+.-..+...+ .-|...+..=+.++.+.+.+++|+.+.+.-. ..... +...| .=.-+..+.
T Consensus 25 ~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~------~~~~f-EKAYc~Yrl 92 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVI------NSFFF-EKAYCEYRL 92 (652)
T ss_pred chHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhc------chhhH-HHHHHHHHc
Confidence 455666777777777655 3455667888888999999999996655432 10101 11111 112233466
Q ss_pred CCCchHHHHHHHHHHcCCCC-chhhHHHHHHHHHcCCChhHHHHHhcccCCC----------------------------
Q 039757 82 SYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPER---------------------------- 132 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------------- 132 (415)
+..++|+..++ |..+ |..+...-...+.+.|++++|..+|+.+.+.
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 77888888777 2233 3335555566777888888888888887421
Q ss_pred ---chhhHH---HHHHHHHhhCCHHHHHHHHhhCC--------CC-----ChhH-----HHHHHHHHHhccCCCCcc---
Q 039757 133 ---NLVTWN---VMITGLVKWGELEYARSLFEEMP--------CR-----NVVS-----WTGILDGYTRMNRSNGAS--- 185 (415)
Q Consensus 133 ---~~~~~~---~li~~~~~~g~~~~a~~~~~~m~--------~~-----~~~~-----~~~li~~~~~~~~~~~a~--- 185 (415)
...+|. ...-.++..|++.+|+++++... .. ++.. --.|..++...|+.++|.
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 011222 22334567899999999998872 11 1111 122445566778877776
Q ss_pred ------CCCchHH----HHhHHHHHhhcCChh----------------H--------------------------HHHHH
Q 039757 186 ------TEPSEIT----ILAVLPAIWQNGAVR----------------N--------------------------CQLIH 213 (415)
Q Consensus 186 ------~~~~~~~----~~~ll~~~~~~~~~~----------------~--------------------------a~~~~ 213 (415)
..+|+.. -|.++..-....-.+ . ..++.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222211 111111100000000 0 00111
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhhCCC--hhhHHHHHHHHHccCchHHHHHHHH------
Q 039757 214 GYGEKRGFNAFDIRVSNCLIDTYAKC--GCIFSALKLFEDISVERKN--LVSWTSIISGFAMHGMGKAAVENFE------ 283 (415)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~------ 283 (415)
+.-....... ....+.+++..+.+. ....+|.+++...-+..|. ...--+++......|+++.|..++.
T Consensus 328 ~~~a~lp~~~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 328 ELSASLPGMS-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHhCCccC-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 1111111111 123333444333222 2466677777766655443 3456667778889999999999999
Q ss_pred --HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------CcC-HHHHHHHHHHHhh
Q 039757 284 --RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------ITD-VVVRRILLGACSF 353 (415)
Q Consensus 284 --~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~~~l~~~~~~ 353 (415)
.+.+.+..|..+.+ ++..|.+.++-+.|..++.+.... .+. ..++.-+...-.+
T Consensus 407 ~ss~~~~~~~P~~V~a----------------iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 407 KSSILEAKHLPGTVGA----------------IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred hhhhhhhccChhHHHH----------------HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 55565666655543 455566666665555555433221 121 2244444445567
Q ss_pred cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
.|+-++|...++++.+.++++..+...++.+|++. +.+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 89999999999999999999999999999999875 45566655443
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=3.6e-07 Score=77.27 Aligned_cols=182 Identities=12% Similarity=-0.019 Sum_probs=134.1
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh---
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV--- 260 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 260 (415)
......+......+...|+++.|...++.+... .|.++ .++..+..++...|++++|...++++.+..|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 344566778888899999999999999999887 34333 4677889999999999999999999988755322
Q ss_pred -hHHHHHHHHHcc--------CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc----cCCcchHHHHHHhHhcCCHHHH
Q 039757 261 -SWTSIISGFAMH--------GMGKAAVENFERMQKVGLKPNRVTFLSVLNACS----HGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 261 -~~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~~li~~~~~~g~~~~A 327 (415)
++..+..++... |++++|.+.|+++... .|+.......+.... ..+.....+...|.+.|++++|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 455555666554 7899999999999875 555433222111100 0000112356778999999999
Q ss_pred HHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 328 EKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 328 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
...++......|+ ...+..+..++...|++++|..+++.+....|
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999888766443 46888999999999999999999998877654
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=9.3e-06 Score=77.73 Aligned_cols=235 Identities=13% Similarity=0.115 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.|+.--+..+.++...+-+.+-+++++++. -.+ + +.+.+...-|.|+-...+. +..++.++.+++-... .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIv---L~~-S--~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIV---LDN-S--VFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHh---cCC-c--ccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh
Confidence 344444555556666666666666665554 110 1 1111222333333333332 2334444544443332 122
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 182 (415)
+.......+-+++|..+|+... .+....+.||. .-+.++.|.++-++..+| ..|+.+..+-.+.|...
T Consensus 1054 ------ia~iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 ------IAEIAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred ------HHHHHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchH
Confidence 2233344445566666665442 22223333332 235566666666655443 45777778877777777
Q ss_pred Ccc----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 039757 183 GAS----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258 (415)
Q Consensus 183 ~a~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 258 (415)
+|. ..-|+..|..++....+.|.+++-.+++....+... .+.+-+.||-+|++.+++.+.++++. +||
T Consensus 1122 dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~---E~~id~eLi~AyAkt~rl~elE~fi~-----gpN 1193 (1666)
T KOG0985|consen 1122 DAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR---EPYIDSELIFAYAKTNRLTELEEFIA-----GPN 1193 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc---CccchHHHHHHHHHhchHHHHHHHhc-----CCC
Confidence 776 455677788888888888888888888887777643 44555678888888888887766653 266
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
......+.+-|...|.++.|.-+|...
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 666677777777777777776666543
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.4e-07 Score=83.08 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=166.9
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A 278 (415)
+.+.|++-+|.-.|+..++. .|.+...|.-|.......++=..|+..+++..+..| |....-.|.-+|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 46788899999999999998 687899999999999999999999999999988765 667788888999999998999
Q ss_pred HHHHHHHHhcC-------------------CCCChhhHHHHHHHHc----cCC-----cchHHHHHHhHhcCCHHHHHHH
Q 039757 279 VENFERMQKVG-------------------LKPNRVTFLSVLNACS----HGG-----LHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 279 ~~~~~~m~~~g-------------------~~p~~~~~~~ll~~~~----~~~-----~~~~~li~~~~~~g~~~~A~~~ 330 (415)
+..|+.-+... -.++...+..+-..|. ..+ +.+..|.-.|--.|++++|.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888874432 0133333333332222 111 2677788889999999999999
Q ss_pred HhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 331 ALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 331 ~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
|+......| |...|+.|...++...+.++|+..++++++..|.-.++...|+..|...|.|.+|...|=+.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 998877767 566999999999999999999999999999999999999999999999999999999887765543
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=2.4e-06 Score=79.88 Aligned_cols=341 Identities=14% Similarity=0.087 Sum_probs=178.8
Q ss_pred chHHHHHHHHH--HhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc-C-
Q 039757 23 HHTLLFNTLLH--FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV-G- 98 (415)
Q Consensus 23 p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g- 98 (415)
=|..|-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+.+-|.-.+-.|... |
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 34555555554 6788899999999988886 7789999999999999888887776666431 1
Q ss_pred -------CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCc---------------------------hhhHHHHHHHH
Q 039757 99 -------FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN---------------------------LVTWNVMITGL 144 (415)
Q Consensus 99 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~li~~~ 144 (415)
-.|+ .+-....-.-...|.+++|+.+|++.++-| ..||.....-+
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 1121 111122223345677777777776665311 12444455555
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHH------HHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGI------LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~l------i~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
-.+++.+.|++.|++...+-...+..| |.-|.+ ...|+..|.-...-+...|+.+.|..+|.....
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~--------~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR--------RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH--------hccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 555566666666655432221111111 111221 122222333333333444555555555543322
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcC--------C
Q 039757 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG--------L 290 (415)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--------~ 290 (415)
|.++++..|-.|+.++|-++-++- .|....-.|.+.|-..|++.+|...|.+.+... -
T Consensus 941 ----------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ----------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred ----------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233444444445555554443332 344445556666666666666666665543210 0
Q ss_pred CCChhhHH-----------HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc---------CCCC---CcCHHHHHHH
Q 039757 291 KPNRVTFL-----------SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG---------IPSE---ITDVVVRRIL 347 (415)
Q Consensus 291 ~p~~~~~~-----------~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------~~~~---~p~~~~~~~l 347 (415)
..+...++ +....|...|.-...-+..|-++|.+.+|+++--+ +.+. ..|+...+.-
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 00001111 01111111111233456668888888888776211 1111 2356666666
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcc---------------------cC------C----CccHHHHHHHHHhcCchhhHHH
Q 039757 348 LGACSFHGNVEMGERVTRKVLEME---------------------RG------N----GGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~------~----~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
..-++...++++|..++-...+.. .| + ......+...|.++|.|..|.+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 666777777777776665443211 11 1 1356678888899998887776
Q ss_pred HHHH
Q 039757 397 LRRV 400 (415)
Q Consensus 397 ~~~~ 400 (415)
-|-+
T Consensus 1167 KfTQ 1170 (1416)
T KOG3617|consen 1167 KFTQ 1170 (1416)
T ss_pred HHhh
Confidence 5544
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=5.6e-09 Score=57.54 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=23.2
Q ss_pred CCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 98 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=1.9e-05 Score=80.74 Aligned_cols=205 Identities=11% Similarity=0.025 Sum_probs=136.0
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhc----CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CC--Ch
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR----GFN--AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----RK--NL 259 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~--~~ 259 (415)
....+...+...|+++.|...+++.... +.. +.....+..+...+...|++++|...+++.... ++ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 3445566778899999999988876653 211 112334556667788889999999999887553 12 12
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 338 (415)
..+..+...+...|++++|...+++.....-.. ....+...... ..+..+...|+.+.|.+.+.......
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK---------VRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH---------HHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 345556677888999999999998886531111 11111111000 01233556899999999987655431
Q ss_pred -cCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 339 -TDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERG------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 339 -p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
... ..+..+..++...|++++|...++++...... ...+...+..++.+.|+.++|...+.+..+..
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 111 12345677788999999999999998875422 22466678888999999999999999887654
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.78 E-value=1.5e-05 Score=72.85 Aligned_cols=368 Identities=14% Similarity=0.073 Sum_probs=226.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
.|-.++..|- .+++...+...+.+. ..-++ ...|.....-.+...|+-++|...........+ -+...|
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL---~k~~e------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCw 78 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQIL---KKFPE------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCW 78 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHH---HhCCc------cchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhH
Confidence 4555555554 678888888888887 53333 445555555566778888999988887766543 355567
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhccC
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~ 180 (415)
..+.-.+-...++++|++.|..... .|...|.-+.-.-+..|+++.....-.+..+ .....|.....++.-.|+
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 7666666666789999999998764 4566777777677777888877776666553 334567777766666666
Q ss_pred CCCcc-----------CCCchHHHHhHHHH------HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 039757 181 SNGAS-----------TEPSEITILAVLPA------IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243 (415)
Q Consensus 181 ~~~a~-----------~~~~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (415)
...|. ..|+...+...... ....|.++.|.+.+..-...- ......-..-...+.+.++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHH
Confidence 66665 23555554433322 245666677766666555441 112233344566778888999
Q ss_pred HHHHHHHHhhhhCCChhhHH-HHHHHHHccCchHHHH-HHHHHHHhc---CCCCChhhHH------------HHHHHHcc
Q 039757 244 SALKLFEDISVERKNLVSWT-SIISGFAMHGMGKAAV-ENFERMQKV---GLKPNRVTFL------------SVLNACSH 306 (415)
Q Consensus 244 ~A~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~-~~~~~m~~~---g~~p~~~~~~------------~ll~~~~~ 306 (415)
+|..++..+....||-.-|. .+..++.+-.+.-++. .+|....+. .-.|-....+ -.+.-..+
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 99999998888777655544 4444554333333333 666665443 1111111111 11111111
Q ss_pred CCc--chHHHHHHhHhcCCHHHHHH----HHhcCCC------------CCcCHHHH--HHHHHHHhhcCChHHHHHHHHH
Q 039757 307 GGL--HYGCLVDMLGRAGRLEQAEK----IALGIPS------------EITDVVVR--RILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 307 ~~~--~~~~li~~~~~~g~~~~A~~----~~~~~~~------------~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.|. .+..+...|-.-...+-..+ +...+.. ..|....| -.++..+-..|+++.|..+++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred cCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111 23334433333222221111 1111111 14555544 4567778899999999999999
Q ss_pred HHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++.+-|.-.+.|..-++.+...|..++|..++++..+.+..
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 99988877778888889999999999999999998876644
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=4.8e-07 Score=81.23 Aligned_cols=253 Identities=13% Similarity=0.045 Sum_probs=175.6
Q ss_pred HHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHH
Q 039757 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 152 (415)
.-+.+.|++..|.-.|+..++.. |-+...|.-|.......++-..|+..+++..+ | |....-+|.-.|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 34567888999999999998875 45788899888888888888889998888876 3 45677778888899999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
|+..|+........ | .+......++....+ .............++|-++........|+.++..|
T Consensus 372 Al~~L~~Wi~~~p~-y-----~~l~~a~~~~~~~~~---------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-Y-----VHLVSAGENEDFENT---------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHHHHHHHHhCcc-c-----hhccccCccccccCC---------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 99998876421100 0 000000000000000 11122223344445555555543333599999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh--hHHHHHHHHccCCc
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV--TFLSVLNACSHGGL 309 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~ 309 (415)
.-.|--.|++++|.+.|+.+...+| |...||.|...++...+.++|+..|++..+. +|+-+ -||
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN----------- 503 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN----------- 503 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-----------
Confidence 9999999999999999999988866 6788999999999999999999999999985 66654 444
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCC---CC--------CcCHHHHHHHHHHHhhcCChHHHH
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIP---SE--------ITDVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~--------~p~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
|.-.|...|.+++|.+.|-+.. .+ .++...|..|=.++...++.+.+.
T Consensus 504 ----lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 504 ----LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ----hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 5556888999999988764322 11 223356666666666666665443
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.74 E-value=1e-06 Score=85.61 Aligned_cols=236 Identities=10% Similarity=0.073 Sum_probs=142.0
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYT 176 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~ 176 (415)
+...+..|+..+...+++++|.++.+...+ |+ ...|..+...+...++.+.+..+ .+.. +...-|+.+-..|.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 455677777878788888888888776554 33 33444444466667776666555 2221 11112222222222
Q ss_pred hccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 039757 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 256 (415)
..++ ..-+...+..+..+|.+.|+.+++..+++++++. .|.++.+.|.+...|... ++++|.+++.+....
T Consensus 108 ~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 108 KILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 2222 1122335666666666777777777777777766 355666777777776666 677777666665441
Q ss_pred CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 257 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
|...+++.++..+|.++... .|+...+- .++.+.+..
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f-----------------------------~~i~~ki~~ 215 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFF-----------------------------LRIERKVLG 215 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhc--CcccchHH-----------------------------HHHHHHHHh
Confidence 55555666677777776663 34433321 111111111
Q ss_pred C---CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 337 E---ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 337 ~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
. ..-+.++..+-..|-..++++++..+++.+++..+.|..+...++..|. +++..
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 1 1234456666677888889999999999999999998888888888886 44444
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=8.1e-07 Score=81.99 Aligned_cols=307 Identities=13% Similarity=0.086 Sum_probs=192.1
Q ss_pred HHHHHhHhhccC------CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 9 TRIHSHLLTTNS------LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 9 ~~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+..+++++..|. ++.+.--=-+-|..|.+.|.+..|.+.-..=. ... . |......+..++.+..
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~-----~l~--~---de~il~~ia~alik~e 662 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDE-----ELL--A---DEEILEHIAAALIKGE 662 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHH-----Hhh--c---cHHHHHHHHHHHHhhH
Confidence 445667776654 22222222356788999999988877543211 112 3 6777777777777777
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC-hhHHHHHhcccCCC--------------chhhH----------
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELPER--------------NLVTW---------- 137 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~--------------~~~~~---------- 137 (415)
-+++|-.+|+++.. |+. .+.+| +.|+ +.+|.++-+-.-.. -...|
T Consensus 663 lydkagdlfeki~d----~dk-----ale~f-kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHD----FDK-----ALECF-KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHhhhhHHHHhhC----HHH-----HHHHH-HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 77777777776632 221 22222 2222 33333332211100 00011
Q ss_pred ---HHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 138 ---NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 138 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
-..+.+......|.+|+.+++.+....+ ...-|..+...|+..|+++.|+++|-
T Consensus 733 ~~~~kaieaai~akew~kai~ildniqdqk~-----------------------~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 733 NCLIKAIEAAIGAKEWKKAISILDNIQDQKT-----------------------ASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-----------------------ccccchHHHHHhccchhHHHHHHHHH
Confidence 1123333455666666666666653221 22235667778889999999999886
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
+. ..++-.|.+|.+.|+|++|.++-++..........|-+-..-+-++|++.+|+++|-... .|+.
T Consensus 790 e~----------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~ 855 (1636)
T KOG3616|consen 790 EA----------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK 855 (1636)
T ss_pred hc----------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH
Confidence 43 234567889999999999999988877632345567777777888999999998886543 3554
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
-|.+|-+.|..|..+++.++-... --..|...+..-|...|+...|...|-+.-
T Consensus 856 -------------------aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e~~g~lkaae~~flea~------ 909 (1636)
T KOG3616|consen 856 -------------------AIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------ 909 (1636)
T ss_pred -------------------HHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHHhccChhHHHHHHHhhh------
Confidence 456688999999999888766543 234477778888888899888887776543
Q ss_pred CccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 375 GGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 375 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
-|..-+.+|..++-|++|.++-+.
T Consensus 910 --d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 910 --DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 355566777777777777776544
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.2e-08 Score=56.22 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=31.3
Q ss_pred CCcchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 20 SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 20 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
++.||..+||+||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 489999999999999999999999999999983
No 102
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.73 E-value=7.7e-05 Score=68.35 Aligned_cols=350 Identities=11% Similarity=0.077 Sum_probs=199.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
+..|-..+..+.+.|++..-...|++... ...+. . ....|...+......+-++.+..+++.-++. .| .
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALr--aLpvt--q---H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~ 170 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALR--ALPVT--Q---HDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--E 170 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHH--hCchH--h---hccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--H
Confidence 35666777777888888888888888873 23333 3 6677888888888888888999999988764 23 3
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC----------CchhhHHHHHHHHHhhC---CHHHHHHHHhhCCC--CC--hhH
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE----------RNLVTWNVMITGLVKWG---ELEYARSLFEEMPC--RN--VVS 167 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~--~~--~~~ 167 (415)
.-+-.|..++..+++++|.+.+..... .+-..|..+-....+.- .--....+++.+.. +| ...
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~L 250 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFL 250 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHH
Confidence 366678888899999999988888763 23345555555444332 22234455556553 23 356
Q ss_pred HHHHHHHHHhccCCCCcc--------CCCchHHHHhHHHHHhh----------------cC------ChhHHHHHHhhhh
Q 039757 168 WTGILDGYTRMNRSNGAS--------TEPSEITILAVLPAIWQ----------------NG------AVRNCQLIHGYGE 217 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~----------------~~------~~~~a~~~~~~~~ 217 (415)
|+.|.+-|.+.|.+++|. ......-|..+..+|+. .+ +++....-|+.+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 889999999999999987 11111122222222211 11 1222222333333
Q ss_pred hcC----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CC------ChhhHHHHHHHHHccCchHHHHH
Q 039757 218 KRG----------FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RK------NLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 218 ~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
..+ ..|.+...|..-+. +..|+..+-...|.++... .| -...|..+...|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 221 02223333332222 2346677777777776655 12 22458889999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------------------CcCH
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------------------ITDV 341 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~ 341 (415)
+|++..+..+ .+..-|-.. |-.-..+-.+..+++.|+++.+..... ..+.
T Consensus 409 ifeka~~V~y----~~v~dLa~v-------w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 409 IFEKATKVPY----KTVEDLAEV-------WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HHHHhhcCCc----cchHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 9999877532 222222222 112334445556666666665544322 1122
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 398 (415)
..|...+......|-++....+++++++...-.+......+..+....-++++.+++
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444555555555555555554444433333333333334444444443
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-05 Score=71.50 Aligned_cols=346 Identities=13% Similarity=0.023 Sum_probs=212.1
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc-hhhHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALVN 111 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~ 111 (415)
.+....|+++.|+.+|-..+ ...+. |...|..-..+++..|++++|.+=-.+-++. .|+ ..-|+-...
T Consensus 10 naa~s~~d~~~ai~~~t~ai---~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAI---MLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGA 78 (539)
T ss_pred HhhcccccHHHHHHHHHHHH---ccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHH
Confidence 45677999999999999988 44333 8889999999999999999888777666654 454 566888888
Q ss_pred HHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCC-----CCCh--------hHHHHHHHHH
Q 039757 112 MYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMP-----CRNV--------VSWTGILDGY 175 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~--------~~~~~li~~~ 175 (415)
++.-.|++++|+..|.+-.+ | +...++.+..++... . ++.+.|..-. ..++ ..|..++..+
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 88889999999999988765 3 455677777766111 1 1111111100 0111 1233333332
Q ss_pred HhccCCCCccCCCchHHHHhHHHHHhhcCChhHH-HHHH------------hhhhhcCC----------CCCCHHHHHHH
Q 039757 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC-QLIH------------GYGEKRGF----------NAFDIRVSNCL 232 (415)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~------------~~~~~~~~----------~~~~~~~~~~l 232 (415)
-+....-..... +.. ++.+.......+.- ...- .......- ......-...+
T Consensus 156 ~~~p~~l~~~l~-d~r----~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 156 QKNPTSLKLYLN-DPR----LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred hcCcHhhhcccc-cHH----HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 221100000000 000 01110000000000 0000 00000000 00012234567
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
.++.-+..+++.|.+-+....+...++.-++....+|...|.+.+....-....+.|.. ...-|+.+-.++.+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r------ 303 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR------ 303 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH------
Confidence 77888888999999999988876544455777788899998888777776666655432 33445555555443
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHH-------------------------HHHHHHHhhcCChHHHHHHHH
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVR-------------------------RILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~ 365 (415)
+..+|.+.++++.|+..|++.... .|+..+- ..=...+.+.|++..|+..+.
T Consensus 304 -~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 304 -LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred -hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 444677778888888887765443 2221111 111345678899999999999
Q ss_pred HHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+++..+|.+...|....-+|.+.|.+..|..-.+...+.+
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998776666554
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=1.6e-05 Score=73.67 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=144.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHH
Q 039757 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELE 151 (415)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 151 (415)
+...+...|-...|..+++++. .|.-.|.+|...|+.++|..+..+..+ ||...|..+.+.....--++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3344444455555555544432 233345555555555555555444332 44445555555544444455
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH
Q 039757 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231 (415)
Q Consensus 152 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 231 (415)
+|.++++.... ..-..+.....+.++++++.+.++.-.+. .|....+|-.
T Consensus 475 kawElsn~~sa----------------------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~ 524 (777)
T KOG1128|consen 475 KAWELSNYISA----------------------------RAQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFG 524 (777)
T ss_pred HHHHHhhhhhH----------------------------HHHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHh
Confidence 55555544421 11112222234478899999999888876 5768899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcc
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 310 (415)
+.-+..+.++++.|.+.|.......|| ...||.+-.+|.+.++-.+|...+.+..+.+..|-...-|
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN------------ 592 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN------------ 592 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec------------
Confidence 999999999999999999998887675 5679999999999999999999999999876554443333
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC---CcCHHHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVVVRRILLGAC 351 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~ 351 (415)
.+....+.|.+++|++.+.++..- ..|......++...
T Consensus 593 ---ymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 593 ---YMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred ---hhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 444567899999999998776543 22444444444443
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=3.4e-06 Score=83.16 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=166.9
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHc-CCC---CchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cc-hhhHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKV-GFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RN-LVTWNVM 140 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~l 140 (415)
+...|-.-|......++.++|++++++++.. ++. --...|.++++.-...|.-+...++|++..+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 6678999999999999999999999998653 111 1235688888888888988999999999887 23 4578999
Q ss_pred HHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcC
Q 039757 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 220 (415)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+.++-+.|..++.+..+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF----------------------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF----------------------GQTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh----------------------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 999999999999999999997532 123345666666777788888899999988886
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 221 FNAF--DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 221 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.|. ......-.+..-.+.|+.+++..+|+......| -...|+..|+.=.++|+.+.+..+|++....++.|-..-+
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 443 455566677778889999999999999888744 5778999999999999999999999999999888776543
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.0001 Score=71.04 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC--CCCchhhHHHHHHHHHcCCChhHHH
Q 039757 46 LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG--FQSHVYVNTALVNMYVSLGFLKDSS 123 (415)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~ 123 (415)
++.+... +.++++.. |+...+..++++...+-+.+-.++++++.-.. +.-+...-|.|+-. +-.-+..++.
T Consensus 968 qLiDqVv---~tal~E~~---dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm 1040 (1666)
T KOG0985|consen 968 QLIDQVV---QTALPETQ---DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVM 1040 (1666)
T ss_pred HHHHHHH---HhcCCccC---ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHH
Confidence 3444555 44444444 88888888999999999999999999986432 11222233333333 3344666677
Q ss_pred HHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 124 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
++.+++..-|.. .+...+...+-+++|+.+|++..
T Consensus 1041 ~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1041 EYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc
Confidence 777777542221 23445667788999999999874
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=2.6e-06 Score=69.35 Aligned_cols=161 Identities=10% Similarity=-0.039 Sum_probs=137.4
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
|..+ ..+-..+.-.|+-+....+...... .|....+..++...+.|++.+|...|.+...++
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------------- 130 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------------- 130 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--------------
Confidence 4444 5566778888998888888877543 355567779999999999999999999998766
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK- 257 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 257 (415)
++|..+++.+.-+|.+.|+.+.|..-|.+..+. .|.++...+.|.-.|.-.|+.+.|..++......++
T Consensus 131 --------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 131 --------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred --------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 678889999999999999999999999999997 576899999999999999999999999999888755
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 258 NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
|...-..+.......|++++|..+-..-..
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 788888899999999999999988766544
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.4e-06 Score=84.19 Aligned_cols=205 Identities=14% Similarity=0.063 Sum_probs=143.8
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF----DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 263 (415)
-+...|-..+......++.++|+.+.++++.. +.+. -.-+|.++++.-..-|.-+...++|+++.+.--.-..|.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 34456667777777888888888888887765 1111 234566666666666777778888888776422234577
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc---C
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT---D 340 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~ 340 (415)
.|...|.+.+..++|.++|+.|.+. +.-....|.. .++.+.+..+-+.|..++++....-| .
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~--------------y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIM--------------YADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHH--------------HHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 8888888888888888888888765 2233334333 55667777777778777766554423 3
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcccc
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (415)
.....-.+..-.+.|+.+.+..+|+..+...|.....|+.+++.-.+.|..+.++.+|++....++.+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 44555566666778888888888888888888888888888888888888888888888888777654
No 109
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=1.2e-05 Score=70.22 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=159.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCCCchhh
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
+++.+-..+...+..++|+.+.+.++ ...+. +..+|+.-...+...| ++++++..++.+.+.. +-+..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI---~lnP~------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqa 108 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVI---RLNPG------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQI 108 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH---HHCch------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHH
Confidence 56666667777889999999999999 55555 6667777766777777 5789999999998875 345667
Q ss_pred HHHHHHHHHcCCCh--hHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHh
Q 039757 106 NTALVNMYVSLGFL--KDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGILDGYTR 177 (415)
Q Consensus 106 ~~~li~~~~~~g~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~ 177 (415)
|+..-..+.+.|+. ++++.+++.+.+ .|..+|+...-++.+.|+++++++.++++.+. +...|+.....+.+
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 77666666666653 677888877775 46778998888999999999999999999753 33444444333332
Q ss_pred ccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhh
Q 039757 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC----GCIFSALKLFEDIS 253 (415)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~ 253 (415)
.++... .....+........++.. .|.+...|+-+...+... ++..+|.+.+.+..
T Consensus 189 ~~~l~~------------------~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 189 SPLLGG------------------LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccccc------------------ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 211000 001123455566566665 577888898888888773 34566888888876
Q ss_pred hhCC-ChhhHHHHHHHHHccC------------------chHHHHHHHHHHH
Q 039757 254 VERK-NLVSWTSIISGFAMHG------------------MGKAAVENFERMQ 286 (415)
Q Consensus 254 ~~~~-~~~~~~~li~~~~~~~------------------~~~~A~~~~~~m~ 286 (415)
...| +......|++.|+... ..++|..++..+.
T Consensus 249 ~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6433 5667888888887632 2356777777773
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=2.2e-06 Score=79.17 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=173.6
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 22 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
.|--..--.+...+.+.|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~ 455 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELEK--DP 455 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CC
Confidence 3444455567788888999999999998875 4667888999999999999999888773 79
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCC
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 181 (415)
|...|..+.+......-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+-+
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n----------------- 515 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN----------------- 515 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-----------------
Confidence 9999999999888777899999998876433 22222223345799999999998765433
Q ss_pred CCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChh
Q 039757 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLV 260 (415)
Q Consensus 182 ~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 260 (415)
+....+|..+..+..+.++++.+...|..-+.. .|.+...||++-.+|.+.|+-.+|...+.+..+.. .+..
T Consensus 516 -----plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 516 -----PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ 588 (777)
T ss_pred -----ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe
Confidence 334556667777777888888888888888876 68788999999999999999999999999888763 3455
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.|...+......|.+++|.+.+.+|...
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 6777788888899999999999888653
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=4.3e-06 Score=68.03 Aligned_cols=125 Identities=11% Similarity=0.116 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHH
Q 039757 238 KCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
..++.+++...++...... .|...|..+...|...|++++|...|++..+. .|+..... ..+..
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~-------------~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELY-------------AALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH-------------HHHHH
Confidence 3556667776676665553 46667777777888888888888888777764 45443322 12444
Q ss_pred H-hHhcCC--HHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCcc
Q 039757 317 M-LGRAGR--LEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 317 ~-~~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (415)
+ +...|+ .++|.+++++.....| +...+..+...+...|++++|+..|+++.+..+++..-
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 3 355565 4777777777766644 55577777777777788888888888877777775433
No 112
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=2.2e-05 Score=68.69 Aligned_cols=229 Identities=11% Similarity=-0.039 Sum_probs=156.9
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcC-ChhHHHHHHh
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHG 214 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~ 214 (415)
++..+-..+...++.++|+.+.+++.+.++..|+ +++.-...+...+ +++++...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~yt----------------------aW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYT----------------------VWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----------------------HHHHHHHHHHHcchhHHHHHHHHH
Confidence 3444445566678889999999988754433222 2232233333445 5788999999
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGC--IFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 291 (415)
.+.+. .|.+..+|+.-...+.+.|+ .+++.++++++.+.. .|..+|+...-++...|+++++++.++++++.+..
T Consensus 97 ~~i~~--npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 97 DVAED--NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHH--CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 99887 56677778776666666775 377889998888774 47788999999999999999999999999987554
Q ss_pred CChhhHHHHHHHHccCCcchHHHHHHhHhc---CC----HHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhc----CChHH
Q 039757 292 PNRVTFLSVLNACSHGGLHYGCLVDMLGRA---GR----LEQAEKIALGIPSEIT-DVVVRRILLGACSFH----GNVEM 359 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~----~~~~~ 359 (415)
....-+.. ...+.+. |. .++++..........| +...|+-+...+... ++..+
T Consensus 175 N~sAW~~R---------------~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 175 NNSAWNQR---------------YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred chhHHHHH---------------HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 43322221 1112222 22 2456666644444435 556888777777663 34567
Q ss_pred HHHHHHHHHHcccCCCccHHHHHHHHHhcC------------------chhhHHHHHHHHhh
Q 039757 360 GERVTRKVLEMERGNGGDYVLMYNILAGVG------------------RYVDAERLRRVMDE 403 (415)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~ 403 (415)
|.+.+.+....++.+..+...|++.|+... ..++|..+++.+.+
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 999999988888888889999999998642 34678888888843
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=6e-05 Score=70.11 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=133.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
+.+....+.+.+|+.+++.+.... .-..-|..+.+.|+..|+++.|+++|-+.. .++-.|..|.+.|+|+.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 444455555666666666554432 223344555555666666666666554432 2444555566666666666
Q ss_pred HHHhhCCCC--ChhHHHHHHHHHHhccCCCCccC-CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH
Q 039757 155 SLFEEMPCR--NVVSWTGILDGYTRMNRSNGAST-EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231 (415)
Q Consensus 155 ~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 231 (415)
++-++...| .+..|-+-..-+-+.|++.+|.. ......-...+..|-+.|..+...++...-.... -..+.-.
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~----l~dt~~~ 887 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDH----LHDTHKH 887 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhh----hhHHHHH
Confidence 665555433 22334444444444555555440 0000001123444555555555555544333221 2233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc--
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 309 (415)
+..-|...|++..|+.-|-+..+ |.+-+..|..++.+++|..+-+. .|- .+..--...+-+-+-.|+
T Consensus 888 f~~e~e~~g~lkaae~~flea~d-------~kaavnmyk~s~lw~dayriakt---egg-~n~~k~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAGD-------FKAAVNMYKASELWEDAYRIAKT---EGG-ANAEKHVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhhh-------HHHHHHHhhhhhhHHHHHHHHhc---ccc-ccHHHHHHHHHHHhhCcHHH
Confidence 55566666777777666655443 44455555555555555444322 111 111111111111111111
Q ss_pred --------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 310 --------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
....-|+.-+..+.++-|.++-+-..+. ........+..-+...|++++|-+.+-+.++.+.-
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 1122345556666677776665433322 12223334444566889999998888888776643
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.53 E-value=0.00056 Score=61.69 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
-|+.+|+.||+-+... .++++.+.++++. ..- |. ....|..-|..-...++++.++.+|.+.+..- .+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~---~~F----P~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLV---NVF----PS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHh---ccC----CC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 6888999999988877 9999999999997 332 32 66788999999999999999999999987653 45
Q ss_pred hhhHHHHHHHHHc-CCChhHH----HHHhcccCC------CchhhHHHHHHH---------HHhhCCHHHHHHHHhhCC
Q 039757 103 VYVNTALVNMYVS-LGFLKDS----SKLFDELPE------RNLVTWNVMITG---------LVKWGELEYARSLFEEMP 161 (415)
Q Consensus 103 ~~~~~~li~~~~~-~g~~~~a----~~~~~~~~~------~~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~ 161 (415)
...|...|+---+ .|+...+ .+.|+-..+ .+...|+..+.. +....+++...++++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 6667766653322 2333331 122222111 233445555443 334456666777777765
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=9.8e-06 Score=66.03 Aligned_cols=161 Identities=13% Similarity=0.079 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|.|..+ ..+-..+--.|+-+....+..+.... +.|....+..+....+.|++..|...+++.... -.+|...++-
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~-- 139 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNL-- 139 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhH--
Confidence 445555 45555666666666666666554333 234444555666667777777777777776553 1223333222
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (415)
+.-+|.+.|++++|..-|.+..+..| ++...+.+.-.+.-.|+.+.|..++.......+.+...-..
T Consensus 140 ------------lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 140 ------------LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred ------------HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 44446677777777666655544422 44556666666666777777777777776666666666677
Q ss_pred HHHHHHhcCchhhHHHHHH
Q 039757 381 MYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~ 399 (415)
|..+....|++++|..+..
T Consensus 208 LAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 208 LALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHhhcCChHHHHhhcc
Confidence 7777777777777766543
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=6.2e-05 Score=66.84 Aligned_cols=147 Identities=9% Similarity=-0.048 Sum_probs=113.9
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchH
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 276 (415)
-.....|..+.|+..+..+.+. .|.|+.......+.+.+.++.++|.+.++++....|+ ....-.+..+|.+.|+++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 3455678899999999999888 6878899999999999999999999999999998776 455777889999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCC
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 356 (415)
+|..++++.... ..-|...|.. |..+|...|+..+|... ....+...|+
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~--------------LAqay~~~g~~~~a~~A----------------~AE~~~~~G~ 440 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDL--------------LAQAYAELGNRAEALLA----------------RAEGYALAGR 440 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHH--------------HHHHHHHhCchHHHHHH----------------HHHHHHhCCC
Confidence 999999998765 3445566665 55557777776666443 2345566777
Q ss_pred hHHHHHHHHHHHHcccCCCcc
Q 039757 357 VEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~ 377 (415)
++.|...+....+....+...
T Consensus 441 ~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 441 LEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHHHHHHHhccCCcHH
Confidence 788877777777766554433
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=4.9e-06 Score=68.83 Aligned_cols=203 Identities=13% Similarity=0.019 Sum_probs=155.7
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHH-HHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS-IISGFA 270 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-li~~~~ 270 (415)
.+..++..+.+..+++.|++++..-.+. .|.+....+.|..+|-...++..|-+.|+++...-|...-|.. -.+++-
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 3556666777888999999998888877 4657888899999999999999999999999887665554443 356778
Q ss_pred ccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 350 (415)
+.+.+..|+.+...|... |+...-..-+.+ ......+++..+..+++..... .+..+.......
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa------------AIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCl 153 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQA------------AIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCL 153 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHH------------HHhcccccCcchHHHHHhccCC-Cccchhccchhe
Confidence 889999999999988763 333222221111 1134578888999999888854 355566666666
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCC
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 412 (415)
..+.|+++.|.+-|+...+-+.-++-.-..+.-+..+.|+++.|.++..+++++|++..|..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 77999999999999999987766555555666677889999999999999999999988753
No 118
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0013 Score=62.89 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=131.1
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039757 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112 (415)
Q Consensus 35 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 112 (415)
....+++..|+.-..++. ... | +. .|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+
T Consensus 19 ~ld~~qfkkal~~~~kll---kk~----P---n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~ 86 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLL---KKH----P---NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNV 86 (932)
T ss_pred HhhhHHHHHHHHHHHHHH---HHC----C---Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHH
Confidence 345788899999888887 333 3 22 23333333 46889999999988887665533 88889999999
Q ss_pred HHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHH----HHHHHhhCCCCChhHHHHHHHHHHhccC-CCCcc
Q 039757 113 YVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEY----ARSLFEEMPCRNVVSWTGILDGYTRMNR-SNGAS 185 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~li~~~~~~~~-~~~a~ 185 (415)
|.+.|+.++|..+++...+ |+......+..+|.|.+++.+ |+++++...+.--.-|+ +++.+.+.-. .+...
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELL 165 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccc
Confidence 9999999999999999876 676666777788888777654 66677655432222222 2222222211 11111
Q ss_pred ----------------CCC----chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 186 ----------------TEP----SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 186 ----------------~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
..+ +..-...-+..+...+++++|..++..-......+.+...-+.-+..+...++|.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 111 111111222233456778888777744333333444555556667777777788777
Q ss_pred HHHHHHhhhhCCC
Q 039757 246 LKLFEDISVERKN 258 (415)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (415)
.++-.++...++|
T Consensus 246 ~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 246 FELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHhCCc
Confidence 7777777665554
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=4.3e-06 Score=64.32 Aligned_cols=109 Identities=9% Similarity=-0.135 Sum_probs=57.5
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-C
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-D 340 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~ 340 (415)
+..+...+...|++++|...|+..... .|+...+ +..+...+.+.|++++|...|+......| +
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a-------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRA-------------HIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHH-------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 334445555556666666665555543 3333221 11244445555566666555555544423 4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
...+..+..++...|++++|+..|+..++..|.++..+.....+.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 445555666666666666666666666666666555554444443
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=2e-05 Score=76.02 Aligned_cols=142 Identities=8% Similarity=-0.025 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|.+...+..|.......|.+++|..+++.+.+..|+ ......++..+.+.+++++|+..+++.... .|+..+....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~- 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL- 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH-
Confidence 435666666777777777777777777777666554 344566666677777777777777776664 5665554433
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 379 (415)
+...+.+.|++++|..+|++.....|+ ..++..+..++...|+.++|...|++..+...+....|.
T Consensus 160 ------------~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 ------------EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred ------------HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 333466677777777777666644343 456666666677777777777777777666555434433
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=1.6e-05 Score=64.65 Aligned_cols=106 Identities=8% Similarity=-0.006 Sum_probs=76.0
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhhCC-ChhhHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY-AKCGC--IFSALKLFEDISVERK-NLVSWTS 264 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~~-~~~~~~~ 264 (415)
+...|..+...+...|+++.|...|+...+. .|.+..++..+..++ ...|+ .++|.+++++.....| +...+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 4455556666666666666666666666665 466888888888764 66676 4888888888888755 5677888
Q ss_pred HHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
+...+.+.|++++|...|+++.+. ..|+...+
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 888888888888888888888775 34444443
No 122
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.46 E-value=0.00013 Score=61.84 Aligned_cols=264 Identities=11% Similarity=0.063 Sum_probs=173.5
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHH---HHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI---TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
++.-.--+-..+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-|++..+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---------------- 100 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---------------- 100 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----------------
Confidence 3333444555666667777777777666665555554433 345555555555555555442
Q ss_pred cCCCCccCCCchHHHH-hHHHHHhhcCChhHHHHHHhhhhhcCCCCCC---HHH------------HHHHHHHHHhcCCH
Q 039757 179 NRSNGASTEPSEITIL-AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD---IRV------------SNCLIDTYAKCGCI 242 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~------------~~~li~~~~~~g~~ 242 (415)
.+||...-. .-...+.+.|.++.|..-|+..++.. |.+ ... ....+..+...|+.
T Consensus 101 -------lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 101 -------LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred -------cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 233322211 11223567788888888888888763 311 111 22334566778999
Q ss_pred HHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhc
Q 039757 243 FSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA 321 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~ 321 (415)
..|++....+.+..| |...|..-..+|...|++..|+.-++..-+..-..+...|. +-..+...
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk---------------is~L~Y~v 236 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK---------------ISQLLYTV 236 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH---------------HHHHHHhh
Confidence 999999999988754 77889999999999999999999888877653333333333 44557788
Q ss_pred CCHHHHHHHHhcCCCCCcCHHH----HHHH---------HHHHhhcCChHHHHHHHHHHHHcccC-C---CccHHHHHHH
Q 039757 322 GRLEQAEKIALGIPSEITDVVV----RRIL---------LGACSFHGNVEMGERVTRKVLEMERG-N---GGDYVLMYNI 384 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~l~~~ 384 (415)
|+.+.++...++..+..||... |..| +....+.+++.++++.-+..++..|. . ...+..+..+
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 9999999888877766565432 2111 22345678888999999999888877 2 2455677778
Q ss_pred HHhcCchhhHHHHHHHHhhhc
Q 039757 385 LAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+...|++.+|++...+..+..
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcC
Confidence 888999999999888876543
No 123
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.00019 Score=73.49 Aligned_cols=319 Identities=11% Similarity=0.020 Sum_probs=196.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCC-CCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc----h
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSH-SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH----V 103 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~ 103 (415)
......+...|++++|...+....+...... ...+ .........+...+...|+++.|...++...+.-...+ .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDG-TLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccch-hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 3444555678999999999988763211111 0001 00111222233455678999999999998876311112 1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC-------Cc--hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE-------RN--LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 174 (415)
...+.+...+...|++++|...+++... +. ..++..+...+...|++++|...+++....-
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~---------- 561 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI---------- 561 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------
Confidence 2345566667789999999999887753 11 2345666777889999999999988764210
Q ss_pred HHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 175 YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF---NAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
...+. .. .......+..+...+...|+++.|...+.+...... .......+..+...+...|+++.|.+.+++
T Consensus 562 -~~~~~-~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 562 -EEQHL-EQ--LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred -HHhcc-cc--ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00000 00 011222334445556777999999988887765311 111244455567788899999999999988
Q ss_pred hhhhC---CChhhH-----HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCC
Q 039757 252 ISVER---KNLVSW-----TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR 323 (415)
Q Consensus 252 ~~~~~---~~~~~~-----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~ 323 (415)
..... .....+ ...+..+...|+.+.|..++........... ...... +..+...+...|+
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~----------~~~~a~~~~~~g~ 706 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN-HFLQGQ----------WRNIARAQILLGQ 706 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc-hhHHHH----------HHHHHHHHHHcCC
Confidence 75531 111111 1122445568899999999877654211111 110000 1125667888999
Q ss_pred HHHHHHHHhcCCCC-----Cc--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 324 LEQAEKIALGIPSE-----IT--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 324 ~~~A~~~~~~~~~~-----~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.++|...+++.... .+ ...+...+..++...|+.++|...+.++.+...+
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999988776543 11 2235666777888999999999999999988765
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=1.9e-05 Score=76.19 Aligned_cols=144 Identities=13% Similarity=-0.006 Sum_probs=100.2
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
..+...+..+.....+.|.+++|..+++...+. .|.+......++..+.+.+++++|...+++.....| +....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 334666777777777888888888888888776 576777777778888888888888888888777655 34556777
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVV 343 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~ 343 (415)
..++.+.|++++|..+|+++... .|+ ...+. .+...+...|+.++|...|+...+. .|...-
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~--------------~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYV--------------GWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 77777788888888888887763 333 22322 2555677778888888888776555 444455
Q ss_pred HHHHH
Q 039757 344 RRILL 348 (415)
Q Consensus 344 ~~~l~ 348 (415)
|+.++
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 44443
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=2.3e-06 Score=65.82 Aligned_cols=93 Identities=9% Similarity=-0.143 Sum_probs=84.2
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+...|++++|...|+......| +...|..+..++...|++++|+..|+++.+.+|.++..+..++.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 45567899999999999998877644 67799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...++...+...
T Consensus 110 eAi~~~~~Al~~~p 123 (144)
T PRK15359 110 LAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999877654
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=2.8e-05 Score=60.08 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
..|..++..+ ..++...+.+.++.+....|+. ...-.+...+...|++++|...|+...... |+... ..+..
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l-~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPEL-KPLAR 88 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHH-HHHHH
Confidence 3444455444 3667777777777776664433 223334456667777777777777777654 33321 11111
Q ss_pred HHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 303 ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
- .|...+...|++++|+..++...........+......+.+.|+.++|...|+..
T Consensus 89 l---------~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 L---------RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred H---------HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 1 1555666777777777777665444334445556666677777777777766653
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=2.8e-05 Score=68.96 Aligned_cols=111 Identities=19% Similarity=0.093 Sum_probs=50.2
Q ss_pred HHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
+...|++++|+..++.+....| |+..+......+.+.|+..+|.+.++++... .|+...... .+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~-------------~~ 380 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQL-------------NL 380 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHH-------------HH
Confidence 3344455555555555444433 3333344444455555555555555555442 344322111 13
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHH
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
..+|.+.|+..+|++++++.....| |+..|..|.++|...|+..++.
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 3444555555555555544443322 3445555555555555544443
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.41 E-value=5.6e-07 Score=50.33 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=2.6e-05 Score=73.29 Aligned_cols=229 Identities=14% Similarity=0.044 Sum_probs=144.4
Q ss_pred CchhHHHHHH--HHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC------------C
Q 039757 67 DSFTYSFLIR--TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE------------R 132 (415)
Q Consensus 67 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------~ 132 (415)
|..|-..++. .|...|+.+.|.+-.+.++ +..+|..+...|.+..++|-|.-.+..|.. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5556666655 4667788888887777664 355789999999999999999988888864 1
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc-------CCCchHHHHhHHHHHhhcCC
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-------TEPSEITILAVLPAIWQNGA 205 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-------~~~~~~~~~~ll~~~~~~~~ 205 (415)
+..+-.-........|.+++|..+|.+.+.-| .|=..|...|.+++|. ..--..||..-..-+...+|
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 11222233334467899999999999987644 3445666778888877 12223566666667777788
Q ss_pred hhHHHHHHhhhhhcCC--------CC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHH
Q 039757 206 VRNCQLIHGYGEKRGF--------NA----------FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~--------~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 267 (415)
.+.|...|++...... .| .+...|.-....+...|+.+.|+.+|..... |..+++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~Vr 946 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVR 946 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhhee
Confidence 8888877765432110 01 1334444444445555666666666655544 555666
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
..|-.|+.++|-.+-++--. -...|. |.+.|...|++.+|..+|.+
T Consensus 947 I~C~qGk~~kAa~iA~esgd-----~AAcYh---------------laR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESGD-----KAACYH---------------LARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred eEeeccCchHHHHHHHhccc-----HHHHHH---------------HHHHhhhhHHHHHHHHHHHH
Confidence 66666666666666554211 112222 66667777777777777753
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.37 E-value=7.6e-07 Score=49.40 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
.+|+.+|.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00018 Score=58.96 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=82.8
Q ss_pred HHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc
Q 039757 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 189 (415)
...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+-| +
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id------------------------e 168 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID------------------------E 168 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc------------------------h
Confidence 345666666666666666532 22333333344455566666666666665433 3
Q ss_pred hHHHHhHHHHHh----hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHH
Q 039757 190 EITILAVLPAIW----QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTS 264 (415)
Q Consensus 190 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 264 (415)
+.|.+.+..++. ..+....|.-+|+++.++ .++++.+.+-...++...|++++|..+++...... .++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334443433332 233466667777777665 34467777777777777777777777777766653 34455444
Q ss_pred HHHHHHccCch-HHHHHHHHHHHh
Q 039757 265 IISGFAMHGMG-KAAVENFERMQK 287 (415)
Q Consensus 265 li~~~~~~~~~-~~A~~~~~~m~~ 287 (415)
+|-+-...|.. +-..+.+.+++.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 44444444433 334455555554
No 132
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.35 E-value=0.00029 Score=66.05 Aligned_cols=307 Identities=13% Similarity=-0.016 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhH
Q 039757 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121 (415)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 121 (415)
.++++.+++.. +.++. |+...-.+.--++..++++.|.+...+..+.+-..+...|..|.-.+.-.+++.+
T Consensus 461 ~kslqale~av---~~d~~------dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 461 KKSLQALEEAV---QFDPT------DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHH---hcCCC------CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 45677777776 33333 3333333344466778888888888888887667788888888888888888888
Q ss_pred HHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhccCCCCcc--CCCchH
Q 039757 122 SSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGILDGYTRMNRSNGAS--TEPSEI 191 (415)
Q Consensus 122 a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~--~~~~~~ 191 (415)
|+.+.+...+ + |...-..-++.-...++.++++.....+.. +.+..-..=+......+...-+. ..-...
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 8888776553 1 111111111122224444444444333320 00000000000000000000000 001111
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-------IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWT 263 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 263 (415)
++..+..-....+....-...+ .+....|.. ...|......+.+.++.++|.-.+.+.....| .+..|.
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~L---p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKL---PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred hhHHHHHHHHhhhhhccccccc---CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 2222211111111111100001 111111111 23455667778888899999888887776533 566788
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH--HHhcCCCCCc-C
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK--IALGIPSEIT-D 340 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~p-~ 340 (415)
.....+...|+.++|.+.|..... +.|+.+-... ++...+.+.|+..-|.. ++.++....| +
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~-------------Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMT-------------ALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHH-------------HHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 888888999999999999988776 4777766433 36666888887777777 8877776634 6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 375 (415)
...|..+...+.+.|+.+.|.+.|+...+....+|
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 77999999999999999999999999998886633
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=1.1e-05 Score=71.94 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=84.4
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHH
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVV 342 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 342 (415)
.|+..+...++++.|..+|+++.+.. |+... . ++..+...++-.+|.+++.+.....| +..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~--~--------------LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~ 235 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVAV--L--------------LARVYLLMNEEVEAIRLLNEALKENPQDSE 235 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHHH--H--------------HHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 34455555677777777777777653 54322 1 34445566677777777766655434 455
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
....-...|.+.++++.|+++.+++.+..|.+..+|..|+.+|...|++++|...++.+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555566667788888888888888888888888888888888888888888888887765
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=7.1e-05 Score=60.75 Aligned_cols=191 Identities=13% Similarity=-0.019 Sum_probs=134.2
Q ss_pred hhcCChhHHHHHHhhhhhc---C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHHHHHHccCch
Q 039757 201 WQNGAVRNCQLIHGYGEKR---G-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMG 275 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~ 275 (415)
....+.++..+++..+... | ..+.-..+|..++-+....|+.+.|...++.+...-|.. ..-..-..-+-..|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 3456778888888777643 2 222234456666677788899999999999988774432 2211112224456889
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhc
Q 039757 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFH 354 (415)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~ 354 (415)
++|+++++.+...+ |+...... .-+...-..|+--+|++-+.+..+. ..|...|.-+...|...
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~K-------------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRK-------------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHH-------------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 99999999988864 44433221 1333455577777888877777666 44888999999999999
Q ss_pred CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC---chhhHHHHHHHHhhhcc
Q 039757 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG---RYVDAERLRRVMDERNA 406 (415)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 406 (415)
|++++|.-.++++.-..|.++..+..+...+.-.| ++.-|.+++.+..+.+.
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999888888888888775544 56678888887776554
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=0.00018 Score=69.35 Aligned_cols=169 Identities=11% Similarity=0.011 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
...|+..|=+.. +..+. -...|..|...|+...+...|.+.|+.+.+.. .-+........+.|++..+++
T Consensus 474 ~~~al~ali~al---rld~~------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 474 SALALHALIRAL---RLDVS------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHHHHHHHH---hcccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHH
Confidence 455555554444 33333 34467777777777777777888887776654 345666777778888888888
Q ss_pred HHHHHhcccCCCc-----hhhHHHHHHHHHhhCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhccCCCCcc-------
Q 039757 121 DSSKLFDELPERN-----LVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGILDGYTRMNRSNGAS------- 185 (415)
Q Consensus 121 ~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~------- 185 (415)
.|..+.-...+.+ ...|-...-.|.+.++...|+.-|+..... |...|..+..+|...|++..|.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 8877743332211 122333444466677777777777766542 4455666777777777776665
Q ss_pred CCCchHHHHhHHH--HHhhcCChhHHHHHHhhhhhc
Q 039757 186 TEPSEITILAVLP--AIWQNGAVRNCQLIHGYGEKR 219 (415)
Q Consensus 186 ~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~ 219 (415)
..-...+|..... ..+..|.+.++...+......
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1111223332222 235677777777777766643
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00036 Score=68.46 Aligned_cols=226 Identities=10% Similarity=0.009 Sum_probs=148.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHh
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 146 (415)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .+. .....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l-----------~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLI-----------DSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhh-----------hhccc
Confidence 67789999999999999999999999777653 22333444444467778887776655 222 22222
Q ss_pred hCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 147 WGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
..++.-+..+...|.. .+......+..+|-+.|+.+++. .+-+..+.+.+...++.. +.++|..++.+
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3333222223333331 23336677888888888888887 556678889999999888 99999999888
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
.+.. |...+++..+.++|.++....|+ ...+-.+......+-...++..++
T Consensus 175 AV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~------------ 226 (906)
T PRK14720 175 AIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL------------ 226 (906)
T ss_pred HHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH------------
Confidence 7665 66777999999999999886543 223333333222221112222221
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHh
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACS 352 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 352 (415)
-. +...|...++++++..+++.+.+..| |.....-++.+|.
T Consensus 227 ---~~--------------l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 ---ED--------------LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ---HH--------------HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11 44448888999999999998887733 5556666776665
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=1.1e-05 Score=61.68 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=83.0
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+...|++++|.+.++.+....| +...|..+...+...|++++|..+++.....+|.+...+..+...|...|+++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 56668899999999999988866534 66788889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...+++..+.+.
T Consensus 103 ~A~~~~~~al~~~p 116 (135)
T TIGR02552 103 SALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998887654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=8.1e-05 Score=57.45 Aligned_cols=129 Identities=12% Similarity=0.162 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch-
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV- 103 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~- 103 (415)
...|..++..+. .++...+...++.+. .....+ | ......-.+...+...|++++|...|+........|+.
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~---~~~~~s-~--ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLA---KDYPSS-P--YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHH---HHCCCC-h--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 456778888775 899999999999998 554330 0 01334455667888999999999999999987633332
Q ss_pred -hhHHHHHHHHHcCCChhHHHHHhcccCCC--chhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 104 -YVNTALVNMYVSLGFLKDSSKLFDELPER--NLVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 104 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
.....|...+...|++++|+..++....+ ....+......+.+.|++++|...|+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 24445778899999999999999887653 3456777889999999999999999763
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=4e-05 Score=58.45 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+......+...+...|++++|.+.|+.+....| +...+..+..++...|++++|...+++...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555555555555444322 334444444455555555555555554443
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=8.7e-05 Score=66.38 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
..|+..+...++++.|..+|+++.+..|+ ....++..+...++-.+|.+++++..+. .|.... ++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~---LL-------- 237 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSE---LL-------- 237 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHH---HH--------
Confidence 33444444445555555555555553332 2233444444445555555555554432 222211 00
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
..-...+.+.++.+.|+++.+++....|+ ..+|..|..+|...|+++.|+-.++.
T Consensus 238 --~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 238 --NLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 01233344555555555555544444342 23555555555555555555544443
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00059 Score=55.59 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHH---cC-CCCchhh-HHHHHHHHHcCCChhHHHHHhcccCC--Cch-hhHHHHHHHHHhhCCHHHH
Q 039757 82 SYPNLGTQLHAVISK---VG-FQSHVYV-NTALVNMYVSLGFLKDSSKLFDELPE--RNL-VTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~---~g-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a 153 (415)
.++++..++++.++. .| ..++..+ |..++-+....|+.+.|...++++.. |.. .+-..-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 356777777777643 34 5566554 55566667788999999999988764 321 1211112234457999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHH
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 233 (415)
+++++.+.+.| +.|..++..=+...-..|+.-.|++-+....+. .+.|...|.-+.
T Consensus 106 ~e~y~~lL~dd----------------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLa 161 (289)
T KOG3060|consen 106 IEYYESLLEDD----------------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELA 161 (289)
T ss_pred HHHHHHHhccC----------------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 99999998765 345555655555666677777888888777776 566999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC---chHHHHHHHHHHHhc
Q 039757 234 DTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG---MGKAAVENFERMQKV 288 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 288 (415)
..|...|++++|.-.++++.-..| +...+..+...+.-.| +.+.|.+.|.+..+.
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987756 5555666666544433 677899999998875
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=1.8e-05 Score=55.82 Aligned_cols=93 Identities=17% Similarity=0.066 Sum_probs=80.2
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+...|++++|...++......| +...+..+...+...|++++|.+.++......+.+...+..++..+...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 466678889999999999998766534 4467888888899999999999999999999888888999999999999999
Q ss_pred hhHHHHHHHHhhhc
Q 039757 392 VDAERLRRVMDERN 405 (415)
Q Consensus 392 ~~A~~~~~~m~~~~ 405 (415)
++|...+++..+.+
T Consensus 85 ~~a~~~~~~~~~~~ 98 (100)
T cd00189 85 EEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHccC
Confidence 99999998876543
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.13 E-value=2.3e-05 Score=59.55 Aligned_cols=92 Identities=5% Similarity=-0.130 Sum_probs=81.7
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+...|++++|.++|+-...-.| +...|-.|.-++-..|++++|+..+..+...+|.++.++..+..++...|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 45557889999999999987765534 66688889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhc
Q 039757 393 DAERLRRVMDERN 405 (415)
Q Consensus 393 ~A~~~~~~m~~~~ 405 (415)
.|.+.|+......
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=4.5e-06 Score=46.21 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=2e-06 Score=59.35 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHhcCCCCCc---CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 321 AGRLEQAEKIALGIPSEIT---DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.|+++.|+.+++++....| +...+..+..+|.+.|++++|..++++ .+.++.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5889999999998887744 345566689999999999999999999 666666666777789999999999999999
Q ss_pred HHH
Q 039757 398 RRV 400 (415)
Q Consensus 398 ~~~ 400 (415)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 976
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=3.7e-06 Score=46.91 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
.+|+++|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.10 E-value=7.8e-05 Score=71.66 Aligned_cols=185 Identities=12% Similarity=-0.101 Sum_probs=142.9
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+...+...|-...+. .+.-...|..|...|+..-+...|...|++..+..+ +...+......|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3455555555555544 565678899999999999999999999999988643 6677899999999999999999983
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHH
Q 039757 283 ERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 283 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 360 (415)
-..-+. .|- ...++.+ .+.-.|.+.++...|+.-|+......| |...|..++.+|.+.|.+..|
T Consensus 550 l~~~qk--a~a~~~k~nW~------------~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 550 LRAAQK--APAFACKENWV------------QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHhhh--chHHHHHhhhh------------hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence 332221 111 1122221 133447889999999999987766634 778999999999999999999
Q ss_pred HHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.++|.++....|.+...-.......+..|++.+|...+......
T Consensus 616 lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999887777777777889999999999998887654
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.09 E-value=5.4e-06 Score=44.74 Aligned_cols=31 Identities=35% Similarity=0.666 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCC
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.0064 Score=55.18 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGL 144 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~ 144 (415)
|..+|+.||+-+... .++++.+.++++... ++-....|...|..-.+..+++.++++|.+... -+...|...+.--
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 889999999987666 899999999999764 455678899999999999999999999998764 4667777766543
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=4e-05 Score=56.90 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=80.5
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHH
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNIL 385 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 385 (415)
.++..+.+.|++++|.+.|+.+....|+ ...+..+..++.+.|+++.|...++.+....|.+ ..++..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 4677788999999999999988765443 3466778899999999999999999999987764 45688899999
Q ss_pred HhcCchhhHHHHHHHHhhhccc
Q 039757 386 AGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
...|++++|...++++.+....
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcC
Confidence 9999999999999999887643
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=0.0001 Score=54.71 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=62.5
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
++..+...+.+.|++++|...|+++... .|+...... .+..+...+.+.|++++|.+.|+.+....|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPN----------AHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHH----------HHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3445556666667777777777666653 232210000 0111455566777777777777665544233
Q ss_pred ----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccH
Q 039757 341 ----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378 (415)
Q Consensus 341 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (415)
..++..+..++...|+.++|...++++.+..|.+..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 34566666777777888888888888877777655433
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0039 Score=52.58 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=46.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+.+-|.+.|.+..|..-++.+++..|. ..++...++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455688899999999999999998887 34677788899999999999998876553
No 153
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.0053 Score=57.36 Aligned_cols=324 Identities=12% Similarity=0.006 Sum_probs=192.1
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHH-------HHHHHhcCCCchHHHHHHHHH
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL-------IRTCVTLSYPNLGTQLHAVIS 95 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~ 95 (415)
|.+..|..+...-...-.++.|...|-+... -.|++ -..-...+ ....+--|.+++|++++-+|-
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d--Y~Gik------~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d 761 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD--YAGIK------LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD 761 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc--ccchh------HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc
Confidence 8888999988887777778888877766542 22332 01111111 112233478888888887775
Q ss_pred HcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C---chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHH
Q 039757 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170 (415)
Q Consensus 96 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (415)
.+. ..|..+.+.|++-.+.++++.-.. . -...|+.+...++....|++|.+.|..-... ..
T Consensus 762 rrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~ 827 (1189)
T KOG2041|consen 762 RRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----EN 827 (1189)
T ss_pred hhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----Hh
Confidence 443 256777888899888888876443 1 2457899999999999999999998876421 12
Q ss_pred HHHHHHhccCCCCcc-----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 171 ILDGYTRMNRSNGAS-----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 171 li~~~~~~~~~~~a~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
.+.++.+...+++-. .+-+....-.+..++.+.|.-++|.+.|-... .| ...+..|...++|.+|
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p------kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP------KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc------HHHHHHHHHHHHHHHH
Confidence 345555555544433 33344455567777888888888877654322 22 2356678888889888
Q ss_pred HHHHHHhhhhCCChhhHH--------------HHHHHHHccCchHHHHHHHHHHHh----cCCCCChhhHHHHHHHHccC
Q 039757 246 LKLFEDISVERKNLVSWT--------------SIISGFAMHGMGKAAVENFERMQK----VGLKPNRVTFLSVLNACSHG 307 (415)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~ 307 (415)
.++-+.-.- |.+.+.- --|..+.++|+.-.|-+++.+|-+ ++..|-..--..++.+.
T Consensus 898 velaq~~~l--~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al--- 972 (1189)
T KOG2041|consen 898 VELAQRFQL--PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL--- 972 (1189)
T ss_pred HHHHHhccc--hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH---
Confidence 888776543 3333311 123445566666666777777744 33444433333344432
Q ss_pred CcchHHHHHHh----------HhcCCHHHHHHHHhcCCCC-----------CcCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 308 GLHYGCLVDML----------GRAGRLEQAEKIALGIPSE-----------ITDVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 308 ~~~~~~li~~~----------~~~g~~~~A~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
|+.-+ -..|..++|..++++.... .-....|..|.+--...|.+..|+..--.
T Consensus 973 ------LvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 973 ------LVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred ------HHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 22222 2346677777766544322 11223344455556677888888776655
Q ss_pred HHHcc--cCCCccHHHHHHHHHhcC
Q 039757 367 VLEME--RGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 367 ~~~~~--~~~~~~~~~l~~~~~~~g 389 (415)
+.+-. .|+...|..+.-+-+...
T Consensus 1047 L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 1047 LSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred hccHhhcCCHHHHHHHHHHHHhhhh
Confidence 54322 345667776665554443
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.94 E-value=3.5e-05 Score=50.83 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC-chhhHHHHHHHHhhhc
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG-RYVDAERLRRVMDERN 405 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~ 405 (415)
+..+|..+...+...|++++|+..|++.++.+|.++..|..++.+|...| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46788899999999999999999999999999999999999999999999 8999999999887653
No 155
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.88 E-value=0.0079 Score=52.73 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=84.2
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
+.+..|.-+...|+...|.++-.+.. .||...|.. .+.+|+..++|++-.++... .+ +
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~l--------------ki~aLa~~~~w~eL~~fa~s--kK--s 236 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWL--------------KIKALAENKDWDELEKFAKS--KK--S 236 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHH--------------HHHHHHhcCCHHHHHHHHhC--CC--C
Confidence 45666777888898888888876653 477777766 45558899999998887654 23 5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+..|..++.+|.+.|+..+|..+..+ -.+..-+..|.+.|.+.+|.+.--+..
T Consensus 237 PIGyepFv~~~~~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 237 PIGYEPFVEACLKYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCChHHHHHHHHHCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 68899999999999999999988887 223667888889999988877654443
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.88 E-value=3.4e-05 Score=50.18 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=46.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+...+...|++++|.+.|+.+++..|.+...+..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567778888888888888888887788888888888888888888888888876554
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=6.3e-05 Score=51.82 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=62.7
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.|+++.|..+++.+.+.....++...+..+..+|.+.|++++|..++++....+.+....-.+..+|.+.|++++|+.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57899999999999998421114555666899999999999999999983232344455556789999999999999999
Q ss_pred HH
Q 039757 283 ER 284 (415)
Q Consensus 283 ~~ 284 (415)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0038 Score=54.19 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=81.8
Q ss_pred HHHhHHHHHhhc-CChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---C----Ch
Q 039757 192 TILAVLPAIWQN-GAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---K----NL 259 (415)
Q Consensus 192 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~----~~ 259 (415)
.+..+...|... |+++.|...|++..+. +....-..++..+...+.+.|++++|.++|+++.... + ++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344445566666 8899999888887753 2111124556778889999999999999999987651 1 11
Q ss_pred h-hHHHHHHHHHccCchHHHHHHHHHHHhcCCC-CChhhHHHHHHHHccCCcchHHHHHHhHh--cCCHHHHHHHHhcCC
Q 039757 260 V-SWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLHYGCLVDMLGR--AGRLEQAEKIALGIP 335 (415)
Q Consensus 260 ~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 335 (415)
. .|-..+-++...|++..|...|++....... .+..-+. ++.. |+.++-. ...+.+|+.-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~-~~~~----------l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK-FLED----------LLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH-HHHH----------HHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH-HHHH----------HHHHHHhCCHHHHHHHHHHHcccC
Confidence 1 2334455677789999999999998764211 1222222 2222 5555543 345777777787777
Q ss_pred CC
Q 039757 336 SE 337 (415)
Q Consensus 336 ~~ 337 (415)
..
T Consensus 265 ~l 266 (282)
T PF14938_consen 265 RL 266 (282)
T ss_dssp --
T ss_pred cc
Confidence 64
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00062 Score=61.09 Aligned_cols=104 Identities=8% Similarity=-0.009 Sum_probs=89.1
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCch
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMG 275 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 275 (415)
...+...|+++.|...|.++++. .|.+...|..+..+|.+.|++++|...++++....| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 45567789999999999999987 577899999999999999999999999999988765 567789999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 276 KAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
++|...|++..+. .|+.......+..|
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999874 67776666655544
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.78 E-value=0.024 Score=50.45 Aligned_cols=365 Identities=11% Similarity=0.037 Sum_probs=201.4
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 84 (415)
+....++-+.+..+. -|+.+|-.||.-|...|..++..+++++|.. |.+.-..+|..-|++-...+++
T Consensus 25 ~~D~lrLRerIkdNP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~---------pfp~~~~aw~ly~s~ELA~~df 92 (660)
T COG5107 25 HGDELRLRERIKDNP---TNILSYFQLIQYLETQESMDAEREMYEQLSS---------PFPIMEHAWRLYMSGELARKDF 92 (660)
T ss_pred CchHHHHHHHhhcCc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC---------CCccccHHHHHHhcchhhhhhH
Confidence 334446666665544 6788999999999999999999999999972 2222556788888888888899
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC---------hhHHHHHhcccC--CC-chhhHHHHHHHH--------
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---------LKDSSKLFDELP--ER-NLVTWNVMITGL-------- 144 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~--~~-~~~~~~~li~~~-------- 144 (415)
..++.+|.+.....+ +...|...++.--+.+. +-+|.++.-... +| +...|+..+..+
T Consensus 93 ~svE~lf~rCL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k 170 (660)
T COG5107 93 RSVESLFGRCLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK 170 (660)
T ss_pred HHHHHHHHHHHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc
Confidence 999999999877644 46667666654433331 222332222111 12 222343333221
Q ss_pred -HhhCCHHHHHHHHhhCCCC------------------------------ChhHH----------HHHHHHHHhcc----
Q 039757 145 -VKWGELEYARSLFEEMPCR------------------------------NVVSW----------TGILDGYTRMN---- 179 (415)
Q Consensus 145 -~~~g~~~~a~~~~~~m~~~------------------------------~~~~~----------~~li~~~~~~~---- 179 (415)
-.+.+++.....+.+|... ....| ..+.+++....
T Consensus 171 wEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~ 250 (660)
T COG5107 171 WEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL 250 (660)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh
Confidence 1222333444444444310 00001 11111111100
Q ss_pred -CCCCcc----------------------------------------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 180 -RSNGAS----------------------------------------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 180 -~~~~a~----------------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
...++. ....+..|..-..-+...++-+.|.........
T Consensus 251 Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~ 330 (660)
T COG5107 251 RTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE 330 (660)
T ss_pred hhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc
Confidence 000000 111111111111112334555555555443333
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------------C-----------------CChhhHHHHHH
Q 039757 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------------R-----------------KNLVSWTSIIS 267 (415)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~-----------------~~~~~~~~li~ 267 (415)
. .| . .---+...|....+-+.....|++.... + .-...|-.++.
T Consensus 331 ~--sp-s--L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N 405 (660)
T COG5107 331 M--SP-S--LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLN 405 (660)
T ss_pred C--CC-c--hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHH
Confidence 2 22 2 1122334444444544444444443221 0 01123445566
Q ss_pred HHHccCchHHHHHHHHHHHhcC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHH-H
Q 039757 268 GFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR-R 345 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~ 345 (415)
.-.+..-.+.|..+|-+..+.| +.++...++.++.. ...|+...|.++|+--....||...| .
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~---------------~~~~d~~ta~~ifelGl~~f~d~~~y~~ 470 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY---------------YATGDRATAYNIFELGLLKFPDSTLYKE 470 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH---------------HhcCCcchHHHHHHHHHHhCCCchHHHH
Confidence 6666667888999999999988 66777777765543 34577788888887655555666544 4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCC--CccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGN--GGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
-.+.-+...++-+.|..+|+...+.-..+ ...|..++..-..-|+...|..+-+.|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55666777888888888888665544332 46788888877788888777766666543
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0011 Score=57.89 Aligned_cols=294 Identities=10% Similarity=-0.073 Sum_probs=168.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELE 151 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 151 (415)
...+.+..++..|+..+...++.+ +-+..-|..-+..+...|++++|.--.+.-.+ .....+.-.-.++...++..
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 334566677888889999888876 34456666677777777888877655443332 22223444445555555566
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc-CCCchHHHHhHHH-HHhhcCChhHHHHHHhhhhhcCCCCCCHHHH
Q 039757 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-TEPSEITILAVLP-AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229 (415)
Q Consensus 152 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (415)
+|.+.|+.-. .| ...+++-.....-.+. .+|.-.++..+-. ++...++.+.|..+-....+.. +.+....
T Consensus 135 ~A~~~~~~~~-----~~-~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al 206 (486)
T KOG0550|consen 135 EAEEKLKSKQ-----AY-KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEAL 206 (486)
T ss_pred HHHHHhhhhh-----hh-HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHH
Confidence 6665555211 11 0111111111000000 2233344444333 3466788888888777777662 3233332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHH---HH----------HHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT---SI----------ISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~l----------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
-.=..++--.++.+.|...|++.....|+...-- .. ..-..+.|++..|.+.|.+.+. +.|+..-
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccc
Confidence 2222344456788899999988877656543211 11 2234567889999999988776 4555444
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHH---HHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR---RILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
-+..+ |........+.|+.++|+.--++.... |.... ..-..++...+++++|.+-++...+....
T Consensus 285 ~nakl---------Y~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 285 TNAKL---------YGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhHHH---------HHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33322 333566678889999988887776665 44322 22233456678888888888888876655
Q ss_pred --CCccHHHHHHHHHhcCc
Q 039757 374 --NGGDYVLMYNILAGVGR 390 (415)
Q Consensus 374 --~~~~~~~l~~~~~~~g~ 390 (415)
...++.....++-++.+
T Consensus 354 ~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 354 CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred cchHHHHHHHHHHHHHhhh
Confidence 33444444444544333
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.78 E-value=0.00085 Score=51.14 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
.++..+-.+..++...|+.+.|.+.|+....
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555554443
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00013 Score=65.42 Aligned_cols=92 Identities=10% Similarity=-0.073 Sum_probs=81.0
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
...+...|++++|++.|++.....| +...|..+..+|...|++++|+..++++++..|.+...|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3446778999999999998877645 566888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 039757 394 AERLRRVMDERNA 406 (415)
Q Consensus 394 A~~~~~~m~~~~~ 406 (415)
|...+++..+.+.
T Consensus 89 A~~~~~~al~l~P 101 (356)
T PLN03088 89 AKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHhCC
Confidence 9999998877653
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00046 Score=48.34 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=78.9
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
+..+...+...|++++|...++...+. .|.+...+..+..++...|++++|.+.|+......| +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 445666778899999999999999887 455667888899999999999999999999877644 44678888999999
Q ss_pred cCchHHHHHHHHHHHhc
Q 039757 272 HGMGKAAVENFERMQKV 288 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~ 288 (415)
.|++++|...+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887753
No 165
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.0052 Score=57.43 Aligned_cols=244 Identities=15% Similarity=0.101 Sum_probs=137.3
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cchh------------hHHHHHHHHHhhCCHHHHHHHHhhCCCCChh
Q 039757 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLV------------TWNVMITGLVKWGELEYARSLFEEMPCRNVV 166 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 166 (415)
.|.+..|..|...-...-.++.|+..|-+... +.+. .-.+=+. +--|++++|.+++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhhh
Confidence 47888898888877777788888888877764 2221 1112222 2258999999999999877642
Q ss_pred H--------HHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh
Q 039757 167 S--------WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238 (415)
Q Consensus 167 ~--------~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (415)
. |-.+...+ +.|..+.- ...-+..++.+...++....++.|.+.|..-... ...+.++.+
T Consensus 767 ielr~klgDwfrV~qL~-r~g~~d~d-D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly~ 834 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLI-RNGGSDDD-DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLYR 834 (1189)
T ss_pred HHHHHhhhhHHHHHHHH-HccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHHH
Confidence 1 22222222 22211111 2333456666666666666666666666543322 224555555
Q ss_pred cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHh
Q 039757 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDML 318 (415)
Q Consensus 239 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~ 318 (415)
..++++-+.+-+.+.+ +....-.+..++...|.-++|.+.+-+-- .|.. -++.+
T Consensus 835 le~f~~LE~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pka-------------------Av~tC 888 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPE---DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPKA-------------------AVHTC 888 (1189)
T ss_pred HHhhhhHHHHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcHH-------------------HHHHH
Confidence 5555555555444432 44556667777888888887777664321 1221 33446
Q ss_pred HhcCCHHHHHHHHhcCCCCCcCHHHHHH--------------HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSEITDVVVRRI--------------LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 384 (415)
...++|.+|.++-++..-. .+.+.-+ -|..+.++|.+-+|.+++.+|.+........|..+-..
T Consensus 889 v~LnQW~~avelaq~~~l~--qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQLP--QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 7777888888887765532 3322211 12234455566666666666666655544444444444
Q ss_pred H
Q 039757 385 L 385 (415)
Q Consensus 385 ~ 385 (415)
|
T Consensus 967 Y 967 (1189)
T KOG2041|consen 967 Y 967 (1189)
T ss_pred H
Confidence 3
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.0084 Score=52.56 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=41.0
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (415)
.+..+.-+...|....|.++-++.. .| +..-|-..+.+++..++|++-.++... +.++.-|..++.+|...
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~-dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VP-DKRFWWLKIKALAENKDWDELEKFAKS----KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----Cc-HHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCCCChHHHHHHHHHC
Confidence 3333444444555555554443332 12 555555555555555555555544322 13345555555555555
Q ss_pred CchHHHHHHHHH
Q 039757 273 GMGKAAVENFER 284 (415)
Q Consensus 273 ~~~~~A~~~~~~ 284 (415)
|+..+|..+..+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555555544
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.0011 Score=57.38 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH-HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG-FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
+|..+++..-+.+..+.|..+|.+..+.++ +...|-..... |...++.+.|.++|+...+. +..+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~------- 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWL------- 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHH-------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHH-------
Confidence 344555555555555555555555554321 22233333333 22234444456666555543 111222211
Q ss_pred cCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
..++.+...|+.+.|..+|++.....|.. ..|...+..-.+.|+.+.+.++.+++.+..+
T Consensus 75 -------~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 75 -------EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp -------HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 13444555556666666665555442222 2555566555566666666666666555443
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.74 E-value=4.5e-05 Score=50.13 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=43.7
Q ss_pred hhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
...|++++|++.|+++....|.+...+..++.+|.+.|++++|.++++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46678888888888888888888888888888888888888888888777665543
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=3.9e-05 Score=41.26 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcC
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS 58 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 58 (415)
.+||.+|++|++.|++++|.++|++|. +.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~---~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR---ERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh---HCc
Confidence 479999999999999999999999998 655
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=0.0002 Score=46.95 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 265 (415)
..|++++|..+|+.+... .|.+..++..++.+|.+.|++++|.++++++....|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 466777777777777766 46577777777777777777777777777777766664444333
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.72 E-value=0.0054 Score=47.72 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=96.4
Q ss_pred CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 256 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
.|++..--.|..+..+.|+..+|...|++...--+.-|...... +..+....+++..|...++.+-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLg--------------lA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLG--------------LAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHH--------------HHHHHHhhccHHHHHHHHHHHh
Confidence 36777777788888888888888888888765444445544433 4555777888888888877665
Q ss_pred CCCc---CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 336 SEIT---DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 336 ~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
+..| ++.+.-.+.+.+...|.+.+|+..|+...+..|. +..-......+.++|+.++|..-+.++.+.-.+..|
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 5422 3345556777888888888888888888887655 334445566778888888877666666554443333
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00046 Score=48.77 Aligned_cols=79 Identities=6% Similarity=-0.042 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCC-CCCCCCCCchhHHHHHHHHHhcCC--------CchHHHHHHHHHHcCC
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSH-SPLRPLFDSFTYSFLIRTCVTLSY--------PNLGTQLHAVISKVGF 99 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~g~ 99 (415)
-.-|..+...+++.....+|+.++ +.|+ . | +..+|+.++.+.++..- .-..+.+|+.|+..++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk---RN~i~l--P---sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l 100 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK---RNGITL--P---SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL 100 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH---hcCCCC--C---cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 345666777799999999999999 9999 6 7 99999999999887652 2356789999999999
Q ss_pred CCchhhHHHHHHHHHc
Q 039757 100 QSHVYVNTALVNMYVS 115 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~ 115 (415)
+|+..+|+.++..+.+
T Consensus 101 KP~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KPNDETYNIVLGSLLK 116 (120)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999987754
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.69 E-value=0.03 Score=48.96 Aligned_cols=307 Identities=12% Similarity=0.025 Sum_probs=172.5
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HH
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CV 79 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~ 79 (415)
+|..+.+.|..-.+..+ |..|-.++.- .||-..|.+.-.+... -+. . |......|+.+ ..
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~----lls--s---DqepLIhlLeAQaal 131 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASK----LLS--S---DQEPLIHLLEAQAAL 131 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHh----hhh--c---cchHHHHHHHHHHHH
Confidence 34455555555444333 6666666654 4666666665554431 111 2 44444444443 34
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhH--HHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVN--TALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~ 154 (415)
-.|+++.|.+-|+.|... |..... ..|.-.--+.|+.+.|.++-+..-+ |. ...+...+...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 567888888888888652 332221 1122222356777777776666543 32 345677778888888888888
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
++++.-+...+. .++. -...-..|+.
T Consensus 209 kLvd~~~~~~vi--------------------e~~~----------------------------------aeR~rAvLLt 234 (531)
T COG3898 209 KLVDAQRAAKVI--------------------EKDV----------------------------------AERSRAVLLT 234 (531)
T ss_pred HHHHHHHHHHhh--------------------chhh----------------------------------HHHHHHHHHH
Confidence 888765531110 0000 0000011111
Q ss_pred HHH---hcCCHHHHHHHHHHhhhhCCChhh-HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcc
Q 039757 235 TYA---KCGCIFSALKLFEDISVERKNLVS-WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 235 ~~~---~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 310 (415)
+-. -..+...|.+.-.+..+..||... --.-..++.+.|+..++-.+++.+-+....|+......
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~----------- 303 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV----------- 303 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH-----------
Confidence 100 012344455555444444466543 33345678888888888888888888755555443221
Q ss_pred hHHHHHHhHhcCCHHHH----HHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQA----EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A----~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
+.+.|+.-.. .+-++.|+.+ +.++...+..+-...|++..|..--+......|. ...|..|.+.-.
T Consensus 304 -------~ar~gdta~dRlkRa~~L~slk~n--naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIee 373 (531)
T COG3898 304 -------RARSGDTALDRLKRAKKLESLKPN--NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEE 373 (531)
T ss_pred -------HhcCCCcHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHh
Confidence 4455543222 1234556655 6777777888888888888887777766665543 456767777665
Q ss_pred h-cCchhhHHHHHHHHhhh
Q 039757 387 G-VGRYVDAERLRRVMDER 404 (415)
Q Consensus 387 ~-~g~~~~A~~~~~~m~~~ 404 (415)
. .|+-.++.+.+.+..+.
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 4 48888888888776544
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0005 Score=59.41 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH-HHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT-CVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+.+|-.+++..-+.+..+.|..+|.+.. ..+.. +...|...... +...++.+.|..+|+...+. ++.+.
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~---~~~~~------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~ 70 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRAR---KDKRC------TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCS-------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-H
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHH---cCCCC------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCH
Confidence 3578899999999999999999999998 44433 34445444444 33356777799999999876 56788
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C----chhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R----NLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
..|...++.+...|+.+.|..+|++... + ....|...+..=.+.|+++.+.++.+++.+
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999875 2 335899999999999999999999988863
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.67 E-value=0.0003 Score=59.75 Aligned_cols=97 Identities=10% Similarity=0.026 Sum_probs=79.7
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYN 383 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 383 (415)
|...+..+.+.|++++|...|+.+....|+. ..+-.+...|...|++++|...|+.+....|.+ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3334444566799999999999988876754 477788899999999999999999999988874 456667788
Q ss_pred HHHhcCchhhHHHHHHHHhhhccc
Q 039757 384 ILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++...|++++|..+++++.+....
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 899999999999999998876543
No 176
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.66 E-value=0.00064 Score=61.27 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=97.2
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWT 263 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 263 (415)
+.+...+..++..+....+++.+..++.......... .-+.+..++++.|.+.|..+.+.++++.=...+ ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3455566777788888888888888887777652111 235566799999999999999999998876665 8999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccC
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 307 (415)
.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888888888888877777654
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.04 Score=49.22 Aligned_cols=381 Identities=13% Similarity=0.063 Sum_probs=197.6
Q ss_pred CCchhhHHHHHHhHhhccCCcch----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHH----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 77 (415)
+++...+..+|+.+-+.---.|. ...-+.++++|.. .+.+.....+....+ ..|-. .|..+..+
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~--~~~~s---------~~l~LF~~ 86 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQ--QFGKS---------AYLPLFKA 86 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHH--hcCCc---------hHHHHHHH
Confidence 35667788888887654432232 2235566777764 445555555555553 33322 33344333
Q ss_pred --HHhcCCCchHHHHHHHHHHc--CCC------------CchhhHHHHHHHHHcCCChhHHHHHhcccCC--------Cc
Q 039757 78 --CVTLSYPNLGTQLHAVISKV--GFQ------------SHVYVNTALVNMYVSLGFLKDSSKLFDELPE--------RN 133 (415)
Q Consensus 78 --~~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~ 133 (415)
+-+.+++.+|.+.+..-... +-. +|...=+..++++...|++.++..+++++.+ -+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 34667888888888776554 222 2222334566778889999999988888764 36
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCc----cCCCchHHHHhHHHHHhhc--CChh
Q 039757 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----STEPSEITILAVLPAIWQN--GAVR 207 (415)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~~~~~~ll~~~~~~--~~~~ 207 (415)
..+|+-++-.+.++=-++ +-+.+...=-..|--+|-.|.+.=+.-++ ...|.+..+..++....-. .+..
T Consensus 167 ~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~ 242 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLP 242 (549)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhcc
Confidence 778887666665442111 11111111112233444444432222222 1455555555555544332 2223
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHHccCchHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~ 281 (415)
--.+++......-..|...-+...|+.-+.. +.+++..+-+.+... ..-+.+|..++....+.++..+|.+.
T Consensus 243 ~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 243 PLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444444445444444455554444 344444333332221 12334567777777777777777777
Q ss_pred HHHHHhcCCCCChhhHHHHH-------HHHccCCc---------------------------chHHHHHHhHhcCC-HHH
Q 039757 282 FERMQKVGLKPNRVTFLSVL-------NACSHGGL---------------------------HYGCLVDMLGRAGR-LEQ 326 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll-------~~~~~~~~---------------------------~~~~li~~~~~~g~-~~~ 326 (415)
+.-+... .|+...-..++ ...+.... ..-.-..-+.+.|. -++
T Consensus 321 l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 321 LALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHH
Confidence 7666542 34333211111 11111110 00011122333343 344
Q ss_pred HHHHHhcCCCC-----------------------------------------------CcCHHHHHHHHHH--HhhcCCh
Q 039757 327 AEKIALGIPSE-----------------------------------------------ITDVVVRRILLGA--CSFHGNV 357 (415)
Q Consensus 327 A~~~~~~~~~~-----------------------------------------------~p~~~~~~~l~~~--~~~~~~~ 357 (415)
|+++++.+..- ..+...-+.|..+ +..+|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 44443332211 0122222333333 4567788
Q ss_pred HHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
.++.-.-.-+.+..| ++.+|..++-++....++++|.+++..+..
T Consensus 479 ~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 887766666666665 788999999999999999999999987643
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0014 Score=52.28 Aligned_cols=131 Identities=7% Similarity=-0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
..|..+...+...|++++|...|++.. ..... ++ .....+..+...+.+.|+++.|...+++..+.. +-+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 108 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEAL---KLEED--PN-DRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSA 108 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhhc--cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHH
Confidence 356667777777888888888888877 33322 20 013567777777888888888888888877653 234555
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
+..+..++...|+...+..-++.. ...+++|.+++++....++..|..++.-+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 555666666666644433221111 0124566666666665555556555555555544
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.65 E-value=0.0088 Score=57.54 Aligned_cols=230 Identities=14% Similarity=0.045 Sum_probs=136.7
Q ss_pred HhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHH--HhhcCChhHHHHHHhhhhhcC
Q 039757 145 VKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA--IWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~ 220 (415)
...+++.+|.+...++.+ |+. .+..++.+ +.+.|+.++|..+++.....+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~--------------------------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~ 73 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA--------------------------LYAKVLKALSLFRLGKGDEALKLLEALYGLK 73 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc--------------------------HHHHHHHHHHHHHhcCchhHHHHHhhhccCC
Confidence 356778888887777653 331 22333333 367888888888888777664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
+.|..+...+-.+|...|+.++|..+|+......|+......+..+|.+.+.+.+-.++=-+|-+. +.-+...|.++
T Consensus 74 --~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV 150 (932)
T KOG2053|consen 74 --GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSV 150 (932)
T ss_pred --CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHH
Confidence 448899999999999999999999999999988788777777778888887766544443333332 23344555555
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC-c--CHHHHHHHHHHHhhcCChHHHHHHHH-HHHHcccC-CC
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI-T--DVVVRRILLGACSFHGNVEMGERVTR-KVLEMERG-NG 375 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~ 375 (415)
++-..+.-...+.+.. .--..-|.+.++.+.+.. + +..-.......+...|++++|.+++. ...+..++ +.
T Consensus 151 ~Slilqs~~~~~~~~~----~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~ 226 (932)
T KOG2053|consen 151 ISLILQSIFSENELLD----PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL 226 (932)
T ss_pred HHHHHHhccCCccccc----chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch
Confidence 5443222111111100 011223455555555541 1 11111122233456777888888883 33333333 44
Q ss_pred ccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 376 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
..-+.-+..+...++|.+..++..++...|..
T Consensus 227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 227 YLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 44445566667777777777776666666544
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.00042 Score=55.28 Aligned_cols=93 Identities=10% Similarity=-0.078 Sum_probs=75.2
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (415)
.+...+...|++++|...|++.....|+ ...+..+...+.+.|++++|...++++.+..+.+...+..++.++...
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 4667788999999999999987654222 357888899999999999999999999999988888888899999887
Q ss_pred Cc--------------hhhHHHHHHHHhhhc
Q 039757 389 GR--------------YVDAERLRRVMDERN 405 (415)
Q Consensus 389 g~--------------~~~A~~~~~~m~~~~ 405 (415)
|+ +++|.+++++....+
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 76 456666666655443
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.0011 Score=46.95 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=44.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhC---CChhhHHHHHHHHHcc--------CchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMH--------GMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|..+...+++.....+|+.++..+ |++.+|+.++.+.++. ++.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 333333344444444444444432 4444555555544432 23456788999999999999999999988
Q ss_pred HHH
Q 039757 302 NAC 304 (415)
Q Consensus 302 ~~~ 304 (415)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 874
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00056 Score=61.63 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER----KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
|.+......+++.+....+++.+..++.+....+ .-..|..++++.|...|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4466777788888888889999999999988762 223566799999999999999999999999999999999998
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhh
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSF 353 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~ 353 (415)
. |++.+.+.|++..|.++...|... ..+..|+..-+.+|.+
T Consensus 143 ~--------------Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 L--------------LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred H--------------HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 8 667799999999999998766544 3344454444444443
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.60 E-value=0.00027 Score=47.11 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=50.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
..|.+.+++++|.++++.++..+|.++..+...+.++...|++++|.+.++...+.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 46778888999999999999988888888888899999999999999988888866553
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0011 Score=52.66 Aligned_cols=84 Identities=4% Similarity=-0.196 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
-...|..+...+...|++++|+..|++.. ..... |. ....++..+...+...|++++|...++...+.. +...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~l~~~--~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~ 106 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEID--PY-DRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLP 106 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcccc--ch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 34556667777777788888888877776 33222 10 023466777777777777777777777776542 2233
Q ss_pred hhHHHHHHHHH
Q 039757 104 YVNTALVNMYV 114 (415)
Q Consensus 104 ~~~~~li~~~~ 114 (415)
.++..+...+.
T Consensus 107 ~~~~~la~i~~ 117 (168)
T CHL00033 107 QALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHH
Confidence 44555555555
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.57 E-value=0.0053 Score=50.34 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=38.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHHHhcCchhhHH
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 395 (415)
+...|.+.|.+..|..-++.+++..|.. ..+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4667889999999999999999998874 356778888999999888554
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.003 Score=59.33 Aligned_cols=148 Identities=9% Similarity=-0.017 Sum_probs=99.4
Q ss_pred CchhhHHHHHHHHHhh-----CCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhc
Q 039757 132 RNLVTWNVMITGLVKW-----GELEYARSLFEEMPC--RNV-VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203 (415)
Q Consensus 132 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~ 203 (415)
.|...|...+.+.... ++.++|..+|++..+ |+- ..|..+..++.....+.. ...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~-----------------~~~ 397 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP-----------------LDE 397 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC-----------------ccH
Confidence 3567788777775432 236788888888875 331 223332222211111100 001
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 283 (415)
.+...+.+...........+.++.+|.++.-.+...|++++|...+++.....|+...|..+...+...|+.++|...++
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12334444444444433345577888888878888899999999999999988888899999999999999999999999
Q ss_pred HHHhcCCCCChhhHH
Q 039757 284 RMQKVGLKPNRVTFL 298 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~ 298 (415)
+.... .|...||.
T Consensus 478 ~A~~L--~P~~pt~~ 490 (517)
T PRK10153 478 TAFNL--RPGENTLY 490 (517)
T ss_pred HHHhc--CCCCchHH
Confidence 98774 67777765
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.015 Score=54.01 Aligned_cols=274 Identities=13% Similarity=0.097 Sum_probs=142.6
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHH---------HHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchH--HH
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLY---------KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG--TQ 89 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a--~~ 89 (415)
+.|....+.+-+..|...|.+++|.++- +.+- ... . +.-.++..-.+|.+.++..-- ..
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA---~~A----L---eAL~f~~ARkAY~rVRdl~~L~li~ 621 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELA---MEA----L---EALDFETARKAYIRVRDLRYLELIS 621 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHH---HHH----H---hhhhhHHHHHHHHHHhccHHHHHHH
Confidence 3455566677777888888888876541 1111 000 1 334556666677777765432 33
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHH
Q 039757 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169 (415)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 169 (415)
-++++++.|-.|+... +...++-.|.+.+|-++|.+--..+ -.+..|.....++.|.+++..-. ..+--
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTDlRMFD~aQE~~~~g~---~~eKK 690 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTDLRMFDYAQEFLGSGD---PKEKK 690 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHHHHHHHHHHHHhhcCC---hHHHH
Confidence 3456677777677543 4466777899999988887764322 12333444444555554443321 11111
Q ss_pred HHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039757 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249 (415)
Q Consensus 170 ~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (415)
.|++--... ..-...|. ...+.+...|+.++ .+..+...|-.+.+.++-
T Consensus 691 mL~RKRA~W---Ar~~kePk-----aAAEmLiSaGe~~K-----------------------Ai~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 691 MLIRKRADW---ARNIKEPK-----AAAEMLISAGEHVK-----------------------AIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HHHHHHHHH---hhhcCCcH-----HHHHHhhcccchhh-----------------------hhhhhhcccHHHHHHHHH
Confidence 111100000 00000000 00111111122111 122333444444445544
Q ss_pred HHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
+++.. .+..+...+...+.+...+.-|-++|..|-. ... +++.....++|++|..
T Consensus 740 rkld~--~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------~ks-----------------iVqlHve~~~W~eAFa 794 (1081)
T KOG1538|consen 740 RKLDK--AEREPLLLCATYLKKLDSPGLAAEIFLKMGD------LKS-----------------LVQLHVETQRWDEAFA 794 (1081)
T ss_pred hhcch--hhhhHHHHHHHHHhhccccchHHHHHHHhcc------HHH-----------------HhhheeecccchHhHh
Confidence 44443 3445555555556666777788888887743 222 6677888899999999
Q ss_pred HHhcCCCCCcCHHH-H----------HHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 330 IALGIPSEITDVVV-R----------RILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 330 ~~~~~~~~~p~~~~-~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
+-++.++-.|++.. | ..--.+|.++|+..+|..+++++....
T Consensus 795 lAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 795 LAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 88887766444431 1 122335666666667777666665544
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0043 Score=58.35 Aligned_cols=140 Identities=9% Similarity=-0.003 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccC--------chHHHHHHHHHHHh
Q 039757 222 NAFDIRVSNCLIDTYAKCG-----CIFSALKLFEDISVERKN-LVSWTSIISGFAMHG--------MGKAAVENFERMQK 287 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~--------~~~~A~~~~~~m~~ 287 (415)
.|.+...|...+++..... +.+.|.++|++..+..|+ ...|..+..++.... +...+....++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4558888888888754432 377899999999888775 345555544443321 12333333433333
Q ss_pred cC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 288 VG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 288 ~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.. ...+...|.. +.......|++++|...+++.....|+...|..+...+...|+.++|.+.+++
T Consensus 413 l~~~~~~~~~~~a--------------la~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 413 LPELNVLPRIYEI--------------LAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred cccCcCChHHHHH--------------HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 1122233322 33334456889999888888877767877888888888888999999999998
Q ss_pred HHHcccCCC
Q 039757 367 VLEMERGNG 375 (415)
Q Consensus 367 ~~~~~~~~~ 375 (415)
+...+|.++
T Consensus 479 A~~L~P~~p 487 (517)
T PRK10153 479 AFNLRPGEN 487 (517)
T ss_pred HHhcCCCCc
Confidence 888888755
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00062 Score=44.12 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=25.7
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+...|++++|...|+.+++. .|.+...+..+..++...|++++|...|+++...
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555555544 2434444444555555555555555555544443
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0023 Score=51.24 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=62.6
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc--cCchHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM--HGMGKAAV 279 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~ 279 (415)
+.|.++-....++.|.+-|+.. |..+|+.|++.+=+ |.+ +=..++++-.. -.+-+-|+
T Consensus 64 RRGHVeFI~aAL~~M~efgv~k-DL~~Y~~LLDvFPK-g~f------------------vp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEK-DLEVYKALLDVFPK-GKF------------------VPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcc-cHHHHHHHHHhCCC-CCc------------------ccccHHHHHhccCcHHHHHHH
Confidence 5688888888999999998766 99999999988743 211 11122222221 23567799
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
+++++|...|+-||..|+..++..+++
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 999999999999999999997777544
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00067 Score=57.05 Aligned_cols=103 Identities=16% Similarity=0.060 Sum_probs=87.2
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhc---CChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFH---GNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
|-.|...|...|+++.|...|...... .+++..+..+..++... ....++..+|++++..++.+..+...|...+.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af 238 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF 238 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 444788899999999999999877665 45677777777776543 34679999999999999999999999999999
Q ss_pred hcCchhhHHHHHHHHhhhccccCCCCC
Q 039757 387 GVGRYVDAERLRRVMDERNALKFPGRS 413 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ 413 (415)
..|++.+|...|+.|.+.....+|..+
T Consensus 239 e~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 239 EQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999998887777643
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.00025 Score=61.66 Aligned_cols=246 Identities=12% Similarity=-0.014 Sum_probs=158.1
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCc----hhHHHHHHHHHhcCCCchHHHHHHHHH--H--cCCC-Cch
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS----FTYSFLIRTCVTLSYPNLGTQLHAVIS--K--VGFQ-SHV 103 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~ 103 (415)
.-+++.|+.+..+.+|+... +.|-. |. .+|..|..+|.-.+++++|+++...=+ . .|-+ -..
T Consensus 25 ERLck~gdcraGv~ff~aA~---qvGTe------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAAL---QVGTE------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHhccchhhhHHHHHHHH---Hhcch------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 46789999999999999999 66666 43 346666777777888888888754321 1 1111 122
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC---------CchhhHHHHHHHHHhhCC--------------------HHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLVTWNVMITGLVKWGE--------------------LEYAR 154 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~--------------------~~~a~ 154 (415)
.....|-..+--.|.+++|...-.+-.. .....+..+...|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 2333455555566777777654333221 123356667777765543 34455
Q ss_pred HHHhhCCC---------CChhHHHHHHHHHHhccCCCCcc---------------CCCchHHHHhHHHHHhhcCChhHHH
Q 039757 155 SLFEEMPC---------RNVVSWTGILDGYTRMNRSNGAS---------------TEPSEITILAVLPAIWQNGAVRNCQ 210 (415)
Q Consensus 155 ~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~---------------~~~~~~~~~~ll~~~~~~~~~~~a~ 210 (415)
++|.+=.+ .....|..|.+.|.-.|+++.|. .......+..+..++.-.|+++.|.
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 55443211 12234666666677777777776 2223456778888888899999998
Q ss_pred HHHhhhh----hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-------CCChhhHHHHHHHHHccCchHHHH
Q 039757 211 LIHGYGE----KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------RKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 211 ~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
+.|+... +.|-.........+|.+.|.-..++++|+.++.+-... -.....|-.|..+|...|..++|+
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 8877654 33333334566677888888888999999988764322 134567888999999999999998
Q ss_pred HHHHHHHh
Q 039757 280 ENFERMQK 287 (415)
Q Consensus 280 ~~~~~m~~ 287 (415)
.+.+.-.+
T Consensus 336 ~fae~hl~ 343 (639)
T KOG1130|consen 336 YFAELHLR 343 (639)
T ss_pred HHHHHHHH
Confidence 77766544
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.0045 Score=53.74 Aligned_cols=163 Identities=9% Similarity=-0.030 Sum_probs=76.2
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C-CC--hhhHHH
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGF----NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----R-KN--LVSWTS 264 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~--~~~~~~ 264 (415)
....|...+++++|...|........ ...-...|.....+|.+. ++++|.+.+++.... + ++ ...+..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556666666655555443211 111223344444444443 777777776665543 1 11 223555
Q ss_pred HHHHHHcc-CchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----
Q 039757 265 IISGFAMH-GMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE----- 337 (415)
Q Consensus 265 li~~~~~~-~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 337 (415)
+...|-.. |++++|.+.|++....-- .......+.+ +..+...+.+.|++++|.++|+++...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~----------~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC----------LLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 55666666 677777777766554200 0111222221 223666667777777777776654322
Q ss_pred --CcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 338 --ITDVV-VRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 338 --~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
..+.. .+-..+-++...||...|.+.+++...
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11111 122223344555666666666666544
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.0012 Score=50.57 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=77.9
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
..-+...|++++|..+|+-+... .-+...|..|..++-..+++++|+..+......++.|+..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33467899999999999866544 23677788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 039757 394 AERLRRVMDE 403 (415)
Q Consensus 394 A~~~~~~m~~ 403 (415)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988776
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.00046 Score=57.72 Aligned_cols=87 Identities=15% Similarity=0.021 Sum_probs=77.4
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+.+.+++.+|+..|.+.+...| |.+.|..=..+|.+.|.++.|++-.+..+..+|....+|..|..+|...|++++|.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 6678999999999988877744 677788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 039757 397 LRRVMDER 404 (415)
Q Consensus 397 ~~~~m~~~ 404 (415)
.|++..+.
T Consensus 171 aykKaLel 178 (304)
T KOG0553|consen 171 AYKKALEL 178 (304)
T ss_pred HHHhhhcc
Confidence 98776553
No 196
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.0017 Score=51.61 Aligned_cols=89 Identities=12% Similarity=-0.173 Sum_probs=70.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH--
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA-- 386 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-- 386 (415)
.+...+...|++++|...|+......|+ ..++..+...+...|++++|+..+++.....+.....+..++.++.
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3556678899999999999877544222 3478889999999999999999999999988877777888887777
Q ss_pred -----hcCchhhHHHHHHHH
Q 039757 387 -----GVGRYVDAERLRRVM 401 (415)
Q Consensus 387 -----~~g~~~~A~~~~~~m 401 (415)
+.|++++|...+++.
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred hHHHHHcccHHHHHHHHHHH
Confidence 788888666665543
No 197
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0028 Score=53.19 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=87.7
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchH
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 276 (415)
.-..+.+++++|...|.+.++. .|.|+..|..=..+|.+.|.++.|++-.+......|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3456789999999999999997 7889999999999999999999999999998886553 568999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
+|...|++..+ +.|+-.+|-.-|
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHH
Confidence 99999999887 689999877643
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.29 E-value=0.0015 Score=42.95 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC-chHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG-MGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~ 287 (415)
++.+|..+...+...|++++|+..|++..+..| +...|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 455666777777777777777777777766644 4556777777777777 67777777776655
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.28 E-value=0.066 Score=44.40 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=92.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcc
Q 039757 235 TYAKCGCIFSALKLFEDISVERK----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 310 (415)
.-.+.|++++|.+.|+.+..+.| ...+.-.++.++-+.++++.|+..+++....-..-...-|...|.+.+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~--- 119 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF--- 119 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh---
Confidence 34566777777777777776632 22345556666777777777777777766543222233344444432210
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCcC------HHHH------------HHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITD------VVVR------------RILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
-.+-+.-.......+|..-|+....+.|+ ...- ..+.+-|.+.|.+..|..-++.|.+..+
T Consensus 120 -~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 120 -FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred -ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence 00000000001122233333333333332 2111 1245568888999999999999999865
Q ss_pred CC---CccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 373 GN---GGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 373 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
.. ...+..+..+|...|..++|...-+-+.
T Consensus 199 ~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 199 DTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred cccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 53 3566677888999999998887765544
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.24 E-value=0.0095 Score=45.97 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh-----cCCCCChhhHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK-----VGLKPNRVTFL 298 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 298 (415)
+...++..+...|++++|.++.+.+....| +...|..+|.+|...|+..+|..+|+++.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345567778889999999999999998865 778999999999999999999999998854 49999988754
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.01 Score=48.91 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 266 (415)
+.++...|.-.-+..-.|+..+|.+.++.|.+..|...+-+.++
T Consensus 283 ~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 283 PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 33666666555566667888899999998888766655555433
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.0047 Score=45.33 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCc--hhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc----hhhHHHHHHHH
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSH--VYVNTALVNMYVSLGFLKDSSKLFDELPE--RN----LVTWNVMITGL 144 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~ 144 (415)
.+..++-..|+.++|..+|+.....|.... ...+-.+...+...|++++|+.+|++... |+ ......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455677788999999999999999887654 34555677889999999999999998764 43 22233344577
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 176 (415)
...|+.++|++.+-....++...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998776666556666665554
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.0056 Score=52.09 Aligned_cols=102 Identities=11% Similarity=-0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
..|...+..+.+.|++++|...|+......|+. ..+.-+..+|...|++++|...|+.+.+. .|+.......+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl- 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM- 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH-
Confidence 334444444455566666666666666654432 34555666666666666666666666553 23322211111
Q ss_pred HHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 303 ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
-.+...+...|+.++|.++|+.+....|+
T Consensus 221 ---------~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 ---------FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 11333455556666666666555544444
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.24 Score=47.25 Aligned_cols=317 Identities=13% Similarity=0.050 Sum_probs=182.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHH---cCCCCchhh
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK---VGFQSHVYV 105 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~ 105 (415)
..+|.-+...+.+..|+++-..+. . |.......|.....-+.+..+.. -..+++.+.+ ....| ...
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~---~------p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~-~iS 509 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLN---L------PESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTP-GIS 509 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhC---C------ccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCC-cee
Confidence 345777788889999999888875 1 31113566777777777665332 2333333322 22233 344
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCC--------CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC-CChhHHHHHHHHHH
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPE--------RNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGILDGYT 176 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~ 176 (415)
|..+...-..+|+.+.|..+++.=+. -+..-+...+.-+.++|+.+-...++-.+.. .+...+...++-
T Consensus 510 y~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~-- 587 (829)
T KOG2280|consen 510 YAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRN-- 587 (829)
T ss_pred HHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 66666666689999999998876543 1333466677778888888888888777652 222222222211
Q ss_pred hccCCCCccCCCchHHHHhHHH--------HHhhcCChhHHHHHH--hh----hhhcCCCCCCHHHHHHHHHHHHhcCCH
Q 039757 177 RMNRSNGASTEPSEITILAVLP--------AIWQNGAVRNCQLIH--GY----GEKRGFNAFDIRVSNCLIDTYAKCGCI 242 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~--------~~~~~~~~~~a~~~~--~~----~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (415)
.+.....|.-+++ .+.+.++-..+...+ +. -...|..| ......+.+.+....
T Consensus 588 ---------~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~----~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 588 ---------QPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIP----ALKTAANAFAKSKEK 654 (829)
T ss_pred ---------chhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccch----hHHHHHHHHhhhhhh
Confidence 1111111211111 111122211111111 11 00111122 223334444444432
Q ss_pred HH----------HHHHHHHhhhh-C--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 243 FS----------ALKLFEDISVE-R--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 243 ~~----------A~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
.- -+.+.+.+..+ + -.-.+.+--+..+..-|+..+|.++-.+.+ .||...|..
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wL---------- 720 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWL---------- 720 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHH----------
Confidence 21 12222222222 1 122345556677788899999998887775 488887776
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
-+.++...++|++-+++-++.+ .+.-|..++.+|.+.|+.++|.+++.+... +...+.+|.+.|
T Consensus 721 ----k~~aLa~~~kweeLekfAkskk----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~ 784 (829)
T KOG2280|consen 721 ----KLTALADIKKWEELEKFAKSKK----SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVG 784 (829)
T ss_pred ----HHHHHHhhhhHHHHHHHHhccC----CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhc
Confidence 4455888999999888776655 357788899999999999999988876422 226788999999
Q ss_pred chhhHHHHHHHH
Q 039757 390 RYVDAERLRRVM 401 (415)
Q Consensus 390 ~~~~A~~~~~~m 401 (415)
++.+|.++--+-
T Consensus 785 ~~~eAad~A~~~ 796 (829)
T KOG2280|consen 785 DVKEAADLAAEH 796 (829)
T ss_pred cHHHHHHHHHHh
Confidence 999998775443
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.16 E-value=0.0034 Score=46.06 Aligned_cols=89 Identities=17% Similarity=-0.022 Sum_probs=71.1
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNILA 386 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 386 (415)
+..++-..|+.++|+.+|++.....+ ....+-.+...+...|++++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567889999999999987766512 1335667788899999999999999999988776 5556666777899
Q ss_pred hcCchhhHHHHHHHHh
Q 039757 387 GVGRYVDAERLRRVMD 402 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~ 402 (415)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 9999999999876544
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.0048 Score=49.52 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=80.0
Q ss_pred CcchHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-------------
Q 039757 21 LLHHTLLFNTLLHFYSLA-----DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS------------- 82 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~------------- 82 (415)
-..|-.+|..+++.+.+. |..+=....++.|. +-|+. . |..+|+.|+..+=+..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~---efgv~--k---DL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD---EFGVE--K---DLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH---HcCCc--c---cHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 457889999999999764 66666777778888 99999 8 9999999999875432
Q ss_pred ---CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC-hhHHHHHhcccC
Q 039757 83 ---YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELP 130 (415)
Q Consensus 83 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 130 (415)
+-+-|++++++|...|+-||..++..+++.+++.+. +.+..+++-.|.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 235689999999999999999999999999987775 344444443343
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0057 Score=53.62 Aligned_cols=280 Identities=13% Similarity=0.049 Sum_probs=158.2
Q ss_pred HHHhcCCCchHHHHHHHHHHcCCCCchh----hHHHHHHHHHcCCChhHHHHHhcccC-------C--CchhhHHHHHHH
Q 039757 77 TCVTLSYPNLGTQLHAVISKVGFQSHVY----VNTALVNMYVSLGFLKDSSKLFDELP-------E--RNLVTWNVMITG 143 (415)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~-------~--~~~~~~~~li~~ 143 (415)
-+++.|+......+|+..++.| ..|.. +|..|-.+|.-.+++++|+++-..=. . -...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3789999999999999999988 34544 45666677777888999987643211 1 112233344444
Q ss_pred HHhhCCHHHHHHHHhhCC----C-----CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 144 LVKWGELEYARSLFEEMP----C-----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~----~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
+--.|.+++|+-.-.+-. + .....+-.+.+.|...|+.-.-..+-+...++.=. ...++.|.++|.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev-----~~al~~Av~fy~ 179 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV-----TSALENAVKFYM 179 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH-----HHHHHHHHHHHH
Confidence 555566766654432221 1 11233445566666655543332111111111000 011223333333
Q ss_pred hh----hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C---CChhhHHHHHHHHHccCchHHHHHHHH
Q 039757 215 YG----EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----R---KNLVSWTSIISGFAMHGMGKAAVENFE 283 (415)
Q Consensus 215 ~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 283 (415)
+- .+.|-.......|-.|.+.|--.|+++.|+..-+.-... + .-...+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 22 222211113445666677777778899888765543221 1 233567888889999999999999887
Q ss_pred HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc-------CCCCCcCHHHHHHHHHHHhhcCC
Q 039757 284 RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG-------IPSEITDVVVRRILLGACSFHGN 356 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~~p~~~~~~~l~~~~~~~~~ 356 (415)
.-...-+.....+... +.|. +|...|.-..++++|+..+.+ +....-....+-+|..++...|.
T Consensus 260 ~tl~LAielg~r~vEA--QscY-------SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEA--QSCY-------SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHHhcchhHHH--HHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 7543222222222111 1222 255556666677777776543 22223355678889999999999
Q ss_pred hHHHHHHHHHHHHcc
Q 039757 357 VEMGERVTRKVLEME 371 (415)
Q Consensus 357 ~~~a~~~~~~~~~~~ 371 (415)
.++|+.+.+..++..
T Consensus 331 h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 331 HRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776654
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.007 Score=49.81 Aligned_cols=136 Identities=8% Similarity=-0.028 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
-+.++.++...|.+.-..+.++++.+.. .++..-..|++.-.+.|+.+.|...|++..+..-+.|..+++.++.-
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~--- 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM--- 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh---
Confidence 3456666666777777777777777753 25556677777777788888888888877766556666666654432
Q ss_pred CCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.....|.-++++..|...+.++....| ++...|.-.-+..-.|+..+|++..+.|++..|.
T Consensus 257 ------n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 ------NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ------hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 244455667777778777777766522 4444444444444567788888888888877766
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.02 Score=48.46 Aligned_cols=114 Identities=10% Similarity=-0.039 Sum_probs=94.4
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhhCC-Chhh
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG---CIFSALKLFEDISVERK-NLVS 261 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~ 261 (415)
.+-|...|-.|.+.|...|+.+.|...|....+. .|+++..+..+..++..+. ...++.++|+++....| |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3556788999999999999999999999999998 5778888888888766554 56789999999998865 6677
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
...|...+...|++.+|...|+.|.+. -|.......++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 888889999999999999999999986 4555566665544
No 210
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.03 E-value=0.15 Score=43.05 Aligned_cols=90 Identities=7% Similarity=0.031 Sum_probs=58.5
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHHHH
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISG 268 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~ 268 (415)
+..++.-+-...-..+|...+..+... -...--.+...|.+.|.+..|..-|+.+.+.-|+ ......++.+
T Consensus 147 ~~~li~~yP~S~ya~~A~~rl~~l~~~-----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 147 FSKLVRGYPNSQYTTDATKRLVFLKDR-----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 334444444444445555444444332 1122224667799999999999999999887443 3456678889
Q ss_pred HHccCchHHHHHHHHHHHh
Q 039757 269 FAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~ 287 (415)
|...|..++|..+...+..
T Consensus 222 y~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 222 YRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHcCChHHHHHHHHHHhc
Confidence 9999999999888776643
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.02 E-value=0.053 Score=42.40 Aligned_cols=128 Identities=16% Similarity=0.083 Sum_probs=100.9
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWT 263 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 263 (415)
.|+...-..+..++.+.|+..+|...|++.... +...|....-.+.++....+++..|...++++.+.+| ++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 455556667888899999999999999998875 4455888999999999999999999999999988744 455677
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
.+.+.+...|++..|+.-|+.....--.|....|. ...+.++|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y----------------~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYY----------------AEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH----------------HHHHHHhcchhHHHHHH
Confidence 78889999999999999999999864344444432 33467788888775543
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.02 E-value=0.0017 Score=43.82 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C---CC-hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVE----R---KN-LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
...+++.+..+|...|++++|.+.|++.... + |+ ..+++.+..+|...|++++|++.+++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567788888899999999999988887654 2 22 45688888899999999999999887654
No 213
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.96 E-value=0.03 Score=52.29 Aligned_cols=163 Identities=20% Similarity=0.106 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh---------hhHHHHHHHHHc----cCchHHHHHHHHHHHhcCCCCC
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL---------VSWTSIISGFAM----HGMGKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~ 293 (415)
.....++...+-.|+-+.+.+.+.+..+. .+. ..|...+..++. ....+.|.++++.+.+. -|+
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 34456777778888999999988886654 222 235555554443 45778899999999885 688
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITDVVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
...|... -.+.+...|++++|++.|++.... ......+--+...+...+++++|.+.|..+.
T Consensus 266 s~lfl~~-------------~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 266 SALFLFF-------------EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred cHHHHHH-------------HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 8777653 234477899999999999976543 2233345556777888999999999999999
Q ss_pred HcccCCCccHHHHH-HHHHhcCch-------hhHHHHHHHHhhhc
Q 039757 369 EMERGNGGDYVLMY-NILAGVGRY-------VDAERLRRVMDERN 405 (415)
Q Consensus 369 ~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~~~ 405 (415)
+...-+...|..+. .++...|+. ++|.+++++.....
T Consensus 333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 87655555555433 345677888 88999998876644
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.0052 Score=51.16 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=76.1
Q ss_pred hHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHHHhcCc
Q 039757 318 LGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNILAGVGR 390 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 390 (415)
+.+.|++.+|...|.......|+ ...+--|..++...|++++|..+|..+.+..|. -++.+..|+....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 45778899999999988877553 334556899999999999999999999998877 45778899999999999
Q ss_pred hhhHHHHHHHHhhhccc
Q 039757 391 YVDAERLRRVMDERNAL 407 (415)
Q Consensus 391 ~~~A~~~~~~m~~~~~~ 407 (415)
.++|..+|+++.++-..
T Consensus 231 ~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 231 TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 99999999999876543
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.90 E-value=0.0075 Score=40.01 Aligned_cols=56 Identities=11% Similarity=-0.113 Sum_probs=26.7
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
+.+.++++.|..+++.+... .|.++..+.....++.+.|++++|.+.|+...+..|
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34444555555555555444 333444444444445555555555555544444433
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.83 E-value=0.11 Score=38.06 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=80.6
Q ss_pred HhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHH
Q 039757 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
.-.|..++..++..+.... .+..-||-+|.-....-+-+-..++++..-+ ..|...
T Consensus 13 ildG~V~qGveii~k~v~S-sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~-------------------- 68 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS-SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISK-------------------- 68 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH-S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG--------------------
T ss_pred HHhchHHHHHHHHHHHcCc-CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchh--------------------
Confidence 3456777777877776664 3445566555555544444544555544432 334333
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHH
Q 039757 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+|++......+-.+-. +......-+..+...|+-+.-.++.+.+...+..+++....+..+|.+.|+..++.+
T Consensus 69 ----C~NlKrVi~C~~~~n~---~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 69 ----CGNLKRVIECYAKRNK---LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp -----S-THHHHHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ----hcchHHHHHHHHHhcc---hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 4444444444433322 445556667777888888888888888877666778888888889999999999999
Q ss_pred HHHHHhhhccc
Q 039757 397 LRRVMDERNAL 407 (415)
Q Consensus 397 ~~~~m~~~~~~ 407 (415)
++++..+.|++
T Consensus 142 ll~~ACekG~k 152 (161)
T PF09205_consen 142 LLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHHhchH
Confidence 99888888875
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.79 E-value=0.006 Score=47.07 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh-----hccccCC
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE-----RNALKFP 410 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 410 (415)
.....++..+...|+++.|...++.+...+|.+...|..++.+|.+.|+..+|.++++++.+ .|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777788899999999999999999999999999999999999999999999988853 4665543
No 218
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.13 Score=45.49 Aligned_cols=322 Identities=11% Similarity=-0.029 Sum_probs=170.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC-chhhHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALV 110 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li 110 (415)
-..+.+..++..|+..+...+ ...+. +..-|..-...+...++++.+.--.+.-++. +| ......-.-
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai---~~~pd------~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~ 124 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAI---DMCPD------NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREG 124 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHH---HhCcc------chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchh
Confidence 345566677788888888887 55555 5555665566666667776666555444332 11 112222233
Q ss_pred HHHHcCCChhHHHHHhccc---------------CC-----CchhhHHHH-HHHHHhhCCHHHHHHHHhhCCCCChhHHH
Q 039757 111 NMYVSLGFLKDSSKLFDEL---------------PE-----RNLVTWNVM-ITGLVKWGELEYARSLFEEMPCRNVVSWT 169 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~---------------~~-----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 169 (415)
.++...++..+|.+.++.- .. |...+|-.+ ..++.-.|+.++|.+.--.+.+.|.
T Consensus 125 ~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---- 200 (486)
T KOG0550|consen 125 QCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---- 200 (486)
T ss_pred hhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc----
Confidence 3444444444444444311 10 111222221 1233445666666555444433221
Q ss_pred HHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH----------HHHHHHhc
Q 039757 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC----------LIDTYAKC 239 (415)
Q Consensus 170 ~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------li~~~~~~ 239 (415)
.+......--.++...++.+.+...|++.++.+-...+...-.. =.+-..+.
T Consensus 201 ------------------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 201 ------------------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ------------------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 11111111112334567788888888888877422222222111 23345678
Q ss_pred CCHHHHHHHHHHhhhhCC-----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 240 GCIFSALKLFEDISVERK-----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
|++.+|.+.|.+.....| +...|-.......+.|+.++|+.--++.... |..-.-.++. -
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~-----------r 327 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLR-----------R 327 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHH-----------H
Confidence 999999999999888744 4455777777788899999999998887763 4333222221 3
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHH---HHHhhcCC--hHHHHHHHHHHHHcccCCCccHHHHHHHH---H
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL---GACSFHGN--VEMGERVTRKVLEMERGNGGDYVLMYNIL---A 386 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~ 386 (415)
...+...++|++|.+-|+...+...+...-..+. .++-+.++ +-+.+-+-..... .+.-.+|..+.-++ .
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~--~eikkayrk~AL~~Hpd~ 405 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASD--DEIKKAYRKLALVHHPDK 405 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhccc--chhhhHHHHHHHHhCCCc
Confidence 3446677899999999987665522322333333 33332222 2222221111111 11234555554444 2
Q ss_pred hcCchhhHHHHHHHHhh
Q 039757 387 GVGRYVDAERLRRVMDE 403 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~ 403 (415)
..|.-.+|...|++.-.
T Consensus 406 ~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 406 NAGSQKEAEAKFKEVGE 422 (486)
T ss_pred CcchhHHHHHHHHHHHH
Confidence 35666778887777654
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.73 E-value=0.0042 Score=41.90 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcc---cC----CCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEME---RG----NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
.+++.+...|...|++++|+..+++..+.. .+ -..++..++.++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 477888889999999999999999988653 11 145778899999999999999999988764
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.69 E-value=0.0084 Score=53.90 Aligned_cols=62 Identities=15% Similarity=-0.127 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc---cHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG---DYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..+..+..+|...|++++|+..|++.++.+|.+.. +|..+..+|...|+.++|.+.+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444455555555555555555554444332 244455555555555555555444444
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.67 E-value=0.0033 Score=36.89 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
.++..+...|...|++++|+++++++++..|.++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778888999999999999999999999988887776653
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.48 E-value=0.24 Score=37.73 Aligned_cols=128 Identities=11% Similarity=0.139 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
.-..++..+...+.+......++.+. ..+.. +....+.++..+++.+. +...+.+.. ..+....
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~---~~~~~------~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~ 72 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESAL---KLNSE------NPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDI 72 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHH---ccCcc------chhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCH
Confidence 34577888888889999999999988 55544 77889999999987643 333344432 1234445
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhh-CCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW-GELEYARSLFEEMPCRNVVSWTGILDGYTR 177 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 177 (415)
..++..|.+.+.++++..++..+.. |...+..+... ++.+.|.+++.+- .+...|..++..+..
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l~ 137 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 5578888888889999999888754 33344444444 8899999988874 355677777766654
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.47 E-value=0.63 Score=41.94 Aligned_cols=91 Identities=13% Similarity=0.027 Sum_probs=71.3
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCC---CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
.|-.++....+..-++.|..+|-+..+. .+++.++++++..++ .|+...|-++|+.-+...++++.--...+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3445677777777789999999887766 568888999998765 578899999999988888776655556777788
Q ss_pred hcCchhhHHHHHHHH
Q 039757 387 GVGRYVDAERLRRVM 401 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m 401 (415)
+-++-..|..+|+..
T Consensus 478 ~inde~naraLFets 492 (660)
T COG5107 478 RINDEENARALFETS 492 (660)
T ss_pred HhCcHHHHHHHHHHh
Confidence 888888888888743
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.46 E-value=0.034 Score=41.26 Aligned_cols=90 Identities=9% Similarity=-0.106 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcC-------CCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHH-
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS-------HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS- 95 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 95 (415)
|..++..+|.++++.|+.+....+++..-.+...+ ....|..|+..+..+++.+++..+++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45688999999999999999999998765221111 1111233366677777777777777777777777663
Q ss_pred HcCCCCchhhHHHHHHHH
Q 039757 96 KVGFQSHVYVNTALVNMY 113 (415)
Q Consensus 96 ~~g~~~~~~~~~~li~~~ 113 (415)
..+++.+..+|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 345655666677666543
No 225
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.41 E-value=0.18 Score=38.81 Aligned_cols=112 Identities=12% Similarity=-0.027 Sum_probs=70.7
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
-.+.++.+.++.++.-+.-. .|..+..-..-...+...|+|.+|.++|+++....|....-..|+..|....+-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 35677889999998888876 4544444444555678899999999999998887665555555655555443322222
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
..-+++...+-.|+... |+..+....+...|...
T Consensus 98 ~~A~evle~~~d~~a~~-----------------Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 98 RYADEVLESGADPDARA-----------------LVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHHhcCCChHHHH-----------------HHHHHHHhccccchhhh
Confidence 33344566554555554 55556666665555553
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.39 E-value=0.0024 Score=34.95 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=29.3
Q ss_pred HHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
+++.++.+|.++.+|..|+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888999999999999999999999999986
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=96.34 E-value=0.11 Score=40.03 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=76.3
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCch
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMG 275 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~ 275 (415)
...+...|++++|+.+|..+... .|.+..-+..|..++-..+++++|...|...-... -|+..+.....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33457899999999999999986 56678888889999999999999999998765553 4667788889999999999
Q ss_pred HHHHHHHHHHHh
Q 039757 276 KAAVENFERMQK 287 (415)
Q Consensus 276 ~~A~~~~~~m~~ 287 (415)
+.|...|.....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.15 Score=43.81 Aligned_cols=149 Identities=10% Similarity=-0.000 Sum_probs=73.5
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHH----HHHHHHHccCchH
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWT----SIISGFAMHGMGK 276 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~----~li~~~~~~~~~~ 276 (415)
-.|+..+|-..++++.+. .|.|...+.--=++|...|+.+.-...++++... .+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 355555555556666655 4555555555555666666666666666666554 33332222 2223344556666
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-C----cCHHHHHHHHHHH
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-I----TDVVVRRILLGAC 351 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~----p~~~~~~~l~~~~ 351 (415)
+|++.-++..+. .|.... . ..++.+.+...|+..++.++..+-... . .-..-|-...-.+
T Consensus 193 dAEk~A~ralqi--N~~D~W-a------------~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCW-A------------SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred hHHHHHHhhccC--CCcchH-H------------HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 666666555442 222211 1 112444455566666666665544433 0 0011122222234
Q ss_pred hhcCChHHHHHHHHHH
Q 039757 352 SFHGNVEMGERVTRKV 367 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~ 367 (415)
...+.++.|+++|+.-
T Consensus 258 iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDRE 273 (491)
T ss_pred hcccchhHHHHHHHHH
Confidence 4556666666666554
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.31 E-value=0.26 Score=46.11 Aligned_cols=167 Identities=17% Similarity=0.086 Sum_probs=107.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHh----hcCChhHHHHH
Q 039757 138 NVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW----QNGAVRNCQLI 212 (415)
Q Consensus 138 ~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~----~~~~~~~a~~~ 212 (415)
..++...+-.||-+.+++.+.+..+ .++..--+ ..--..|..++..++ ...+.+.+.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la----------------~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA----------------ALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH----------------HHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 3444455567888888888876543 22211000 011122333333332 35678889999
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CCChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+..+.++ .|......-.-.+.+...|++++|.+.|++.... ......+--+.-++....++++|...|.++.+
T Consensus 256 L~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 256 LEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 9999998 5634433344467788899999999999986643 12334455666778889999999999999988
Q ss_pred cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCH-------HHHHHHHhcCCC
Q 039757 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRL-------EQAEKIALGIPS 336 (415)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~~~~ 336 (415)
.. ..+..+|..+..+| +...|+. ++|.++|.++..
T Consensus 334 ~s-~WSka~Y~Y~~a~c-------------~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 334 ES-KWSKAFYAYLAAAC-------------LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred cc-ccHHHHHHHHHHHH-------------HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 52 34566666655555 6666766 888888876543
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.30 E-value=0.49 Score=38.81 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCChh----hHHHHHHHHHccCchHHHH
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNLV----SWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~ 279 (415)
+...|.+.|.+..|..-++.+.+.-|++. ..-.++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56778888888888888888887755443 3566777788888766443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.28 E-value=0.028 Score=50.66 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=64.3
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 262 (415)
.+.+...++.+..++...|++++|...|+..++. .|.+. .+|..+..+|...|+.++|.+.+++..+.. ...|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f 146 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKF 146 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhH
Confidence 4555667778888888888888888888887776 45444 347778888888888888888888877731 1122
Q ss_pred HHHHH--HHHccCchHHHHHHHHHHHhcCC
Q 039757 263 TSIIS--GFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 263 ~~li~--~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
..+.. .+..-.+.++..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 01112233456667777776664
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.15 E-value=0.87 Score=40.30 Aligned_cols=246 Identities=15% Similarity=0.128 Sum_probs=154.9
Q ss_pred cCCChhHHHHHhcccC---CCchhhHHHHHHHH--HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc
Q 039757 115 SLGFLKDSSKLFDELP---ERNLVTWNVMITGL--VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189 (415)
Q Consensus 115 ~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 189 (415)
-.|+-..|.++-.+-. ..|....-.++.+- .-.|+.+.|.+-|+.|.. |+++ .
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt---------------------R 153 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET---------------------R 153 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH---------------------H
Confidence 3567777766655443 24444444444333 346889999999998863 1111 0
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCChh--hHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLV--SWTS 264 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~ 264 (415)
..-+..+.-.--+.|+.+.|..+-+..... -|.-.......+...|..|+|+.|+++.+.-... .+++. .-..
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv 231 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV 231 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 111222333335678888888877777665 4667888999999999999999999999876654 34432 2233
Q ss_pred HHHHHHc---cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH
Q 039757 265 IISGFAM---HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341 (415)
Q Consensus 265 li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (415)
|+.+-.. .-+...|...-.+..+ +.||..--..+ -..++.+.|++.++-.+++.+-+..|.+
T Consensus 232 LLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~-------------AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 232 LLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV-------------AARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH-------------HHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 3332221 1245555555544443 56666543322 3456899999999999999988876777
Q ss_pred HHHHHHHHHHhhcCChHHH-HHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMG-ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
.++...+ +.+.|+.... .+-.+++.+..+.+......+..+-...|++..|..--+..
T Consensus 297 ~ia~lY~--~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 297 DIALLYV--RARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHH--HhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 6665443 3466664322 23334445556678888888999988999988776554443
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.11 E-value=0.15 Score=38.40 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCC----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISVERK----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
.-.....+.|++++|.+.|+.+...-| ....--.|+.+|.+.+++++|...+++.++....-...-|...+.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 344556678999999999999988722 3345667889999999999999999999886444334555554444
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.04 E-value=0.89 Score=40.66 Aligned_cols=174 Identities=10% Similarity=-0.041 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----C-ChhhHHHHHHHHHc---cCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVER----K-NLVSWTSIISGFAM---HGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
+.+...++-+|-...+++..+++.+.+...+ + +...-....-++.+ .|+.++|+.++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3334455556777777777777777776641 0 11112233445555 67777888877775555556666666
Q ss_pred HHHHHHHccCCcchHHHHHH-hHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCC-hH---HHHHHH----HHHH
Q 039757 298 LSVLNACSHGGLHYGCLVDM-LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN-VE---MGERVT----RKVL 368 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~ 368 (415)
..+=..+-. ..+.. +.....+++|...|.+.-...|+..+--.++..+...|. .+ +..++- ..+.
T Consensus 221 gL~GRIyKD------~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 221 GLLGRIYKD------LFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHH------HHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 654333211 01110 122234667777766443332333321112222222222 11 222222 1111
Q ss_pred HcccC-CCc---cHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 369 EMERG-NGG---DYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 369 ~~~~~-~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+.. +.. .+..+..++.-.|++++|.+..++|.+..
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 22211 222 23356666777788888888888877653
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.16 Score=44.97 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=74.6
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+..|.-.|.+.+++.+|++.-...... .+|+...-.=.++|...|+++.|+..|+++.+..|.|-.+-..|+..-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 334666789999999999988776655 4577777777889999999999999999999999999888888887777666
Q ss_pred chhhH-HHHHHHHhh
Q 039757 390 RYVDA-ERLRRVMDE 403 (415)
Q Consensus 390 ~~~~A-~~~~~~m~~ 403 (415)
++.+. .++|..|-.
T Consensus 340 ~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHhh
Confidence 65554 777777754
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.023 Score=49.98 Aligned_cols=90 Identities=17% Similarity=0.031 Sum_probs=74.2
Q ss_pred HhHhcCCHHHHHHHHhcCCCC----------------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHH
Q 039757 317 MLGRAGRLEQAEKIALGIPSE----------------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (415)
.|.+.|++..|..-|++.... ..-..++..+.-++.+.+++..|++..++.++.+++|....+.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 477788888887776653221 1233466778888999999999999999999999999999999
Q ss_pred HHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 381 MYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
-+.+|...|.++.|+..|+++.+...
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987543
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.95 E-value=0.11 Score=39.13 Aligned_cols=88 Identities=16% Similarity=0.034 Sum_probs=66.5
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC-ccHHHHHHHHHh--cCc
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG-GDYVLMYNILAG--VGR 390 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~g~ 390 (415)
..+.|++++|.+.|+.+..+.| ....--.++.+|.+.+++++|...+++.+++.|.++ ..|.....++.. ...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 4678999999999999988844 334666789999999999999999999999999844 445555555443 332
Q ss_pred ---------------hhhHHHHHHHHhhhc
Q 039757 391 ---------------YVDAERLRRVMDERN 405 (415)
Q Consensus 391 ---------------~~~A~~~~~~m~~~~ 405 (415)
..+|..-|+++++.-
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 556777777666543
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.89 E-value=0.69 Score=42.83 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=98.1
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 112 (415)
....-+|+++.+.+..+.-. - - |. ......+.+++.+-+.|.++.|+++-.. .. .-.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~---l---l--~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeL 327 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN---L---L--PN-IPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFEL 327 (443)
T ss_dssp HHHHHTT-HHH-----HHHH---T---G--GG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhh---h---c--cc-CChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHH
Confidence 34455788888777665211 0 0 11 1245578888888888988888877432 22 23455
Q ss_pred HHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHH
Q 039757 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 192 (415)
..+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|++...
T Consensus 328 Al~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------------------ 375 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------------------------------ 375 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------------------------
T ss_pred HHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------------------------
Confidence 668899999999888875 566899999999999999999999998864
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (415)
+..++-.|.-.|+.++..++.+.....|. ++....++.-.|+.++..+++.+.
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33444455566666666666665555531 344455556667777777766554
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.83 E-value=0.86 Score=37.63 Aligned_cols=204 Identities=17% Similarity=0.056 Sum_probs=141.2
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHHH-
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIIS- 267 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~- 267 (415)
..........+...++...+...+.........+.....+......+...+++..+.+.+.......++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 3455556666677777887777777776521234467777778888888888999999999888754332 23333333
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC--HHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD--VVVRR 345 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~ 345 (415)
.+...|+++.|...+.+... ..|....+... +......+...++.+.|...+.......++ ...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEA----------LLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHH----------HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 78899999999999999854 33420011110 111333366788999999998877766344 56777
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+...++++.+...+.......+.....+..+...+...|.++++...+.+.....
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888899999999999988887755556666666667777888888887766543
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.51 Score=40.10 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=92.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGC 313 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 313 (415)
.....|+..+|..+|.......| +...--.++.+|...|+.+.|..++..+-..- ...-+.. +.+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~-l~a---------- 208 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHG-LQA---------- 208 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHH-HHH----------
Confidence 45566777777777777766533 44556667777788888888888877765431 1111111 111
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCc
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGR 390 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 390 (415)
-+..+.+.....+...+-++.... | |...-..+...+...|+.+.|.+.+-.+++.+.. +...-..++..+.-.|.
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aad-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAAD-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 233445555555555555555544 5 5666667777788888888888887777776544 66677777777777775
Q ss_pred hhhHHHHH
Q 039757 391 YVDAERLR 398 (415)
Q Consensus 391 ~~~A~~~~ 398 (415)
-+.+...+
T Consensus 288 ~Dp~~~~~ 295 (304)
T COG3118 288 ADPLVLAY 295 (304)
T ss_pred CCHHHHHH
Confidence 55544333
No 241
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.73 E-value=0.43 Score=38.05 Aligned_cols=112 Identities=14% Similarity=-0.028 Sum_probs=76.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--C--ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--K--NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
....+...-...+..+.+.|++.|+.+.|.+.|.++.+.- + -...+-.+|+.....+++..+...+.+....--.+
T Consensus 27 ~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 27 KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 3343333245667789999999999999999999988762 2 23457788899999999999999988876643233
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
.......=+.++ -...+...+++.+|-+.|-+....
T Consensus 107 ~d~~~~nrlk~~---------~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVY---------EGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHH---------HHHHHHHhchHHHHHHHHHccCcC
Confidence 322222222221 222345678999999988766554
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.69 E-value=0.62 Score=43.11 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcC
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 289 (415)
+...|..|.+...+.|+++-|++.|.+... |..|+-.|.-.|+.++..++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 566778888888888888888888877765 6677777777888777777766666543
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.60 E-value=0.23 Score=36.94 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=38.8
Q ss_pred CChhhHHHHHHHHHccCchHHHHHHHHHHHh-cCCCCChhhHHHHHHH
Q 039757 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNA 303 (415)
Q Consensus 257 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~ 303 (415)
|+..+..+++.+|+..|++..|+++++...+ .++.-+..+|..|++=
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7888899999999999999999999988765 5777777787777654
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.59 E-value=0.064 Score=39.23 Aligned_cols=90 Identities=16% Similarity=0.030 Sum_probs=74.1
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC----CccHHHHHHHHHhcCch
Q 039757 317 MLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN----GGDYVLMYNILAGVGRY 391 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 391 (415)
++...|+++.|++.|......-| ....|+.=.+++.-.|+.++|+.=+++..+..-+. ...|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 46789999999999987665533 67789999999999999999999999999877553 24566677788889999
Q ss_pred hhHHHHHHHHhhhcc
Q 039757 392 VDAERLRRVMDERNA 406 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~ 406 (415)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877664
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=0.39 Score=37.29 Aligned_cols=119 Identities=17% Similarity=0.122 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHHHhhhhCCChhhHHHH-----HHHHHccCchHHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCCcc
Q 039757 237 AKCGCIFSALKLFEDISVERKNLVSWTSI-----ISGFAMHGMGKAAVENFERMQKVGLKPNRV-TFLSVLNACSHGGLH 310 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 310 (415)
...++.++|..-|.++.+. +.-.|-.| .....+.|+...|...|++.-...-.|-.. -...|-.+
T Consensus 69 A~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa------- 139 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA------- 139 (221)
T ss_pred HHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH-------
Confidence 3445555566666555553 22222222 123344555555666665555443333222 11111111
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC-Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE-IT-DVVVRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
..+...|.++....-.+.+... .| ....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 140 -----~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 -----YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred -----HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1234455555555555444333 22 222334444444555566666655555554
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=1.3 Score=37.77 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=93.2
Q ss_pred HHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 186 (415)
.......|+..+|..+|+.... .+...--.++.+|...|+.+.|..++..+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--------------------- 199 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--------------------- 199 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch---------------------
Confidence 3456688999999999888764 3455677888999999999999999999874321
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CChhhHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWT 263 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 263 (415)
.........-+..+.+.........+-+..-. .|.|...-..+...+...|+.+.|.+.+-.+.... .|...-.
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 00111111122233333333333333333333 46677888888888888999998888877776652 3445566
Q ss_pred HHHHHHHccCchHHHH
Q 039757 264 SIISGFAMHGMGKAAV 279 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~ 279 (415)
.|+..+.--|.-+.+.
T Consensus 277 ~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 277 TLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHhcCCCCHHH
Confidence 6777666666444333
No 247
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.54 E-value=1 Score=36.48 Aligned_cols=179 Identities=13% Similarity=0.026 Sum_probs=93.2
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
|-...|+--|.+.... .|.-+.+||-|.--+...|+++.|.+.|+...+..|+ ..+.-.-.-++--.|+++-|.+-+
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 3334444444444443 5767888888888888899999999999988885442 122222222334467888887766
Q ss_pred HHHHhcC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH-HHhcCCCCCcCHHHHHHHHHHHhhcCChHHH
Q 039757 283 ERMQKVG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK-IALGIPSEITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 283 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
-..-+.. -.|=...|..+ -.+.-+..+|.. +.++.... +..-|...|-.+.- |+.. .
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl-----------------~E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL-gkiS-~ 215 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYL-----------------NEQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL-GKIS-E 215 (297)
T ss_pred HHHHhcCCCChHHHHHHHH-----------------HHhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH-hhcc-H
Confidence 6655432 11211111111 112223444433 33344333 44444433333221 1211 1
Q ss_pred HHHHHHHHHcccC-------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 361 ERVTRKVLEMERG-------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 361 ~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..+++++...... -.++|..|+.-+...|..++|..+|+-.+..+
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2233333332222 13577777777777888888877777665544
No 248
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.42 E-value=1.8 Score=41.04 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCChHH--HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 27 LFNTLLHFYSLADSPKK--AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
-++..-++|.+-.+..- -+.-++++. +.|-. | +.. .+...|+-.|++.+|-++|.+ .|..
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k---~rge~--P---~~i---LlA~~~Ay~gKF~EAAklFk~---~G~e---- 661 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERK---KRGET--P---NDL---LLADVFAYQGKFHEAAKLFKR---SGHE---- 661 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHH---hcCCC--c---hHH---HHHHHHHhhhhHHHHHHHHHH---cCch----
Confidence 34555566666555332 222233444 55555 6 544 345567778888888888864 3432
Q ss_pred hHHHHHHHHHcCCChhHHHHHhc
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFD 127 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~ 127 (415)
|..+..|.....+|.|.+++.
T Consensus 662 --nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 662 --NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred --hhHHHHHHHHHHHHHHHHHhh
Confidence 123445555555555555543
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.37 E-value=0.27 Score=41.25 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC-CCC-c
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQS-H 102 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~-~ 102 (415)
...|+.-+..+. .|++..|...|...++.+..+.. ....+--|..++...|+++.|..+|..+.+.- -.| -
T Consensus 142 ~~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 142 TKLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTY------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcc------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 346888887765 67799999999999943333322 55677778999999999999999999987642 112 2
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE 131 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 131 (415)
+..+--|..+..+.|+.++|..+|+++.+
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35566677888899999999999999876
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.33 E-value=0.91 Score=34.54 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=41.6
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCc
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 274 (415)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ .++..+.++. . .+.......+..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN--K--SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--cccCCHHHHHHHHHHcCc
Confidence 34444445555666666666666554 235556666666665542 2233333331 1 223333345555555555
Q ss_pred hHHHHHHHHHH
Q 039757 275 GKAAVENFERM 285 (415)
Q Consensus 275 ~~~A~~~~~~m 285 (415)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555544
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.23 E-value=0.58 Score=34.44 Aligned_cols=90 Identities=14% Similarity=0.044 Sum_probs=73.8
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCCh----hhHHHHHHHHHcc
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNL----VSWTSIISGFAMH 272 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~li~~~~~~ 272 (415)
-+++..|+.+.|.+.|.+.... .|..+..||.-..++--.|+.++|.+=+++..+. ++.. ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567899999999999999887 6779999999999999999999999999998876 2322 2344455567788
Q ss_pred CchHHHHHHHHHHHhcC
Q 039757 273 GMGKAAVENFERMQKVG 289 (415)
Q Consensus 273 ~~~~~A~~~~~~m~~~g 289 (415)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999998888877765
No 252
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.19 E-value=0.058 Score=41.39 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHH
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 152 (415)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35778888899999999999999877667788899999999999999999999885443 333456666667777777
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc----CCCchHHHHhHHHHHhhcCC
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS----TEPSEITILAVLPAIWQNGA 205 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~----~~~~~~~~~~ll~~~~~~~~ 205 (415)
|.-++.++...+. .+..+...++++.|. ...+...|..++..|...+.
T Consensus 89 a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 7777776653111 000122233344443 44455666666666655443
No 253
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.16 E-value=3.5 Score=40.37 Aligned_cols=283 Identities=9% Similarity=-0.038 Sum_probs=150.9
Q ss_pred HHHHHHHHcC-CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---CCC
Q 039757 89 QLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRN 164 (415)
Q Consensus 89 ~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~ 164 (415)
++-..+.+.. .+.....-...+..+.+.+++....+++..- ..+...-.....+....|+.++|....+.+= ...
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~ 162 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL 162 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Confidence 4444444433 2333344445556677888898888844333 2345555566777888898777766655542 344
Q ss_pred hhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039757 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (415)
...++.+++.+.+.|.. .+...+.- +......|+...|..+...+- +........++..+. +...
T Consensus 163 p~~cd~l~~~~~~~g~l------t~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~---~p~~ 227 (644)
T PRK11619 163 PNACDKLFSVWQQSGKQ------DPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQN---DPNT 227 (644)
T ss_pred ChHHHHHHHHHHHcCCC------CHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHH---CHHH
Confidence 66788888888876642 22233333 333445666666666665541 101222333333332 2333
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHH--ccCchHHHHHHHHHHHhc-CCCCChhhHHHHHHHHccCCcchHHHHHHhHhc
Q 039757 245 ALKLFEDISVERKNLVSWTSIISGFA--MHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA 321 (415)
Q Consensus 245 A~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~ 321 (415)
+..++.... ++...-..++.++. ...+.+.|..++...... ++.++... .+-. .+.......
T Consensus 228 ~~~~~~~~~---~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~--~~~~----------~lA~~~a~~ 292 (644)
T PRK11619 228 VETFARTTG---PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQ--ELRD----------IVAWRLMGN 292 (644)
T ss_pred HHHHhhccC---CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHH--HHHH----------HHHHHHHhc
Confidence 333332221 22211111222222 244668888888876443 22222221 1111 122223333
Q ss_pred CCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
+..++|...+........+......-++.-...++++.+...+..|-........-..=+++++...|+.++|..+|++.
T Consensus 293 ~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 293 DVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred cCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22566777776654432344444555555557788888888887775544444555666777777788888888888776
Q ss_pred h
Q 039757 402 D 402 (415)
Q Consensus 402 ~ 402 (415)
.
T Consensus 373 a 373 (644)
T PRK11619 373 M 373 (644)
T ss_pred h
Confidence 4
No 254
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.13 E-value=2.9 Score=39.27 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=58.7
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHH---HHHhcCCCCCcCHHHHHHH-
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAE---KIALGIPSEITDVVVRRIL- 347 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~l- 347 (415)
.|+...|..+++.....- |+...... .-+....+.|..+.+. .++....+..-+..+...+
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l-------------~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVL-------------RKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHH-------------HHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHH
Confidence 457777777777776652 54433211 1233455667777766 4444433321122222222
Q ss_pred ---HH-HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 348 ---LG-ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 348 ---~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
.+ .+.-.++.+.|..++.++.+..+++...|..+++.....+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 11 1234567888888888888888887777777777765554
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.00 E-value=1.9 Score=37.42 Aligned_cols=100 Identities=10% Similarity=-0.107 Sum_probs=65.4
Q ss_pred HHHHHHhHhcCCHH---HHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh
Q 039757 312 GCLVDMLGRAGRLE---QAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387 (415)
Q Consensus 312 ~~li~~~~~~g~~~---~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (415)
..++.+|...+..+ +|.++++.+....|+ +.++..-+..+.+.++.+.+.+.+.+|...-.-....+...+..+..
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 34777888877655 455566666555555 44555667777778999999999999998766444555555555422
Q ss_pred --cCchhhHHHHHHHHhhhccccCCC
Q 039757 388 --VGRYVDAERLRRVMDERNALKFPG 411 (415)
Q Consensus 388 --~g~~~~A~~~~~~m~~~~~~~~~~ 411 (415)
......|...+.++....+.+.+.
T Consensus 168 l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 168 LAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 233456777777777666665544
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.99 E-value=0.079 Score=30.89 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHH
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 75 (415)
.+|..+...|.+.|++++|.++|+++. ...+. |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l---~~~P~------~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRAL---ALDPD------DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCcC------CHHHHHHhh
Confidence 467889999999999999999999999 66655 666665553
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.91 E-value=0.12 Score=43.88 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+..++..+...|+.+.+.+.++++....|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555555555555554443
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.89 E-value=1.5 Score=39.63 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=130.9
Q ss_pred HHhhCCHHHHHHHHhhCCC---CC------hhHHHHHHHHHHhccCCCCcc-------CCCchHHHHhHHHHH--hhcCC
Q 039757 144 LVKWGELEYARSLFEEMPC---RN------VVSWTGILDGYTRMNRSNGAS-------TEPSEITILAVLPAI--WQNGA 205 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~---~~------~~~~~~li~~~~~~~~~~~a~-------~~~~~~~~~~ll~~~--~~~~~ 205 (415)
+-+.+++.+|.++|.++-+ .+ .+.-+.++++|...+--.-+. ..| ...|..+..++ .+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhh
Confidence 3477889999999988763 11 122445666665432111000 222 34455555543 56788
Q ss_pred hhHHHHHHhhhhhc--CCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHH
Q 039757 206 VRNCQLIHGYGEKR--GFNAF-----------DIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSII 266 (415)
Q Consensus 206 ~~~a~~~~~~~~~~--~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li 266 (415)
+++|.+.+...... +-.++ +...-+..++++...|++.+++.+++++.+. .-+..+||.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99998888877765 33332 2222356678889999999999999998776 25788888866
Q ss_pred HHHHccC---------------chHHHHHHHHHHHhc------CCCCChhhHHHHHHHHccCCc----------------
Q 039757 267 SGFAMHG---------------MGKAAVENFERMQKV------GLKPNRVTFLSVLNACSHGGL---------------- 309 (415)
Q Consensus 267 ~~~~~~~---------------~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~---------------- 309 (415)
-.+.++= -++.+.-..++|... .+.|....+..++....-...
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 5555431 234445555555432 345666666665554433222
Q ss_pred ----chHHH----HHHhHhcCCHHHHHHHHhcCCCC------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 310 ----HYGCL----VDMLGRAGRLEQAEKIALGIPSE------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 310 ----~~~~l----i~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|+.+ +..+.. +.+++..+-+.+... ..-..++..++....+.++...|.+.+..+...+|.
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 22222 222222 334443333322211 113446777777777888888888888877776665
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.75 E-value=0.39 Score=41.90 Aligned_cols=229 Identities=12% Similarity=-0.008 Sum_probs=130.4
Q ss_pred cCCChhHHHHHhcccCC------CchhhHHHHHHHHHhhCCHHHHHHHH-hhCCCCChhHHHHHHHHHHhccCCCCccCC
Q 039757 115 SLGFLKDSSKLFDELPE------RNLVTWNVMITGLVKWGELEYARSLF-EEMPCRNVVSWTGILDGYTRMNRSNGASTE 187 (415)
Q Consensus 115 ~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 187 (415)
...+.++|+..+..... .-..++..+..+.++.|.+++++..- ..|.- .....+ ..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~------------a~~~~d-----s~ 80 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT------------ARELED-----SD 80 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH------------HHHHHH-----HH
Confidence 55667777766655443 12345666777777777777665432 11110 000000 01
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CC--
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK-- 257 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-- 257 (415)
..-..|..+.+++.+.-++.+++.+-+.-......-+ .....-++..++...+.++++.+.|+....- .|
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L 160 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML 160 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence 1122344555555555566666665555444321111 1234445777888888999999999987654 12
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHh----cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 258 NLVSWTSIISGFAMHGMGKAAVENFERMQK----VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
....|-.|-..|.+..++++|.-+..+..+ .|+.--...|..+.-. .+.-++...|++..|.+.-++
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly---------hmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY---------HMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH---------HHHHHHHHhcccccHHHHHHH
Confidence 235688999999999999998876655433 3333333334433322 145566777777766666554
Q ss_pred CCCC---CcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 334 IPSE---ITD----VVVRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 334 ~~~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
..+. .-| ......+...|...|+.+.|..-++.+..
T Consensus 232 a~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 232 AMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3322 122 33445667778888888888777776543
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.75 E-value=0.34 Score=44.23 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc---CHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT---DVVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
|.....+.|+.++|.+.++++.+..| .......|+.++...+.+.++..++.+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34445566666666666666654323 22255566666666666666666666653
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=94.74 E-value=0.53 Score=42.84 Aligned_cols=141 Identities=10% Similarity=0.025 Sum_probs=92.0
Q ss_pred hhH--HHHHHHHHcc-----CchHHHHHHHHHHH-hcCCCCChhhHHHHHHHHccCCcchHHHHHHhH-hcCCHHHHHHH
Q 039757 260 VSW--TSIISGFAMH-----GMGKAAVENFERMQ-KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG-RAGRLEQAEKI 330 (415)
Q Consensus 260 ~~~--~~li~~~~~~-----~~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~-~~g~~~~A~~~ 330 (415)
..| ..++.+.... ...+.|+.+|.+.. ...+.|+...-...+.-|. +.....++. ......+|.++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h-----~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH-----MSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH-----HHHHHhcCCCchHHHHHHHHH
Confidence 445 5555554431 24567888888887 2235666554443333321 111122222 23445566666
Q ss_pred HhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 331 ALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 331 ~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
-+...+. .-|......+..+....++++.|...|++....+|....+|......+.-.|+.++|.+.+++..+..
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 6655554 34677777777777777889999999999999999988889888888888999999999988855443
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.63 E-value=0.22 Score=41.79 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred CcchHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-------------
Q 039757 21 LLHHTLLFNTLLHFYSLA-----DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS------------- 82 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~------------- 82 (415)
-+.|-.+|-..+..+... +.++=....++.|. ..|+. . |..+|+.|+..+-+..
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~---eyGVe--r---Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK---EYGVE--R---DLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH---Hhcch--h---hHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 356778888888887654 45555666677787 99999 8 9999999998865543
Q ss_pred ---CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC-hhHHHHHhcccCC
Q 039757 83 ---YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELPE 131 (415)
Q Consensus 83 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~ 131 (415)
+-+=+++++++|...|+.||..+-..|++++.+.+- ..+..+++--|++
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 224578999999999999999999999999999886 4555566555653
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=2.4 Score=35.15 Aligned_cols=93 Identities=17% Similarity=-0.002 Sum_probs=53.1
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE----- 337 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 337 (415)
...-..+.+..++++|-..+.+-... .-...+|+..-. .|-..|..|.-..++..|.+.++.-...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~--~~~~~~y~~~~k-------~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~ 224 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVA--ADKCDAYNSQCK-------AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK 224 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhH--HHHHhhcccHHH-------HHHHHHHHHhhHHHHHHHHHHhcchhcCccccC
Confidence 33445566666666665555432211 111112222111 2334666677788999999999874332
Q ss_pred CcCHHHHHHHHHHHhhcCChHHHHHHHH
Q 039757 338 ITDVVVRRILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (415)
.-+..+...|+.+| ..||.+.+..++.
T Consensus 225 sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 225 SEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 23566888888887 4578777766554
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.47 E-value=1.7 Score=33.51 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=9.5
Q ss_pred hHhcCCHHHHHHHHhcCCCC
Q 039757 318 LGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~ 337 (415)
+...|++++|.++|+++...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34444555555555544444
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.40 E-value=0.52 Score=40.24 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh-----cCCCCChhhHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK-----VGLKPNRVTFL 298 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 298 (415)
-..++..++..+...|+.+.+.+.++++....| +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445667788888888889999998888887754 777899999999999999999888888765 58888888766
Q ss_pred H
Q 039757 299 S 299 (415)
Q Consensus 299 ~ 299 (415)
.
T Consensus 232 ~ 232 (280)
T COG3629 232 L 232 (280)
T ss_pred H
Confidence 5
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.38 E-value=2.2 Score=37.25 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC----CHHHHHHHHhcCCCC-----CcCHHHHH
Q 039757 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG----RLEQAEKIALGIPSE-----ITDVVVRR 345 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~-----~p~~~~~~ 345 (415)
+++...+++.|.+.|++-+..+|-... ++....... ...+|..+|+.|++. .++..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~------------~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a 145 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAAL------------IILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFA 145 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHH------------HHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHH
Confidence 345678899999999999887765532 122222222 355788899999988 44555666
Q ss_pred HHHHHHhhcCC----hHHHHHHHHHHHHcccCCCccHHHHHHHHH---h--cCchhhHHHHHHHHhhhccccCC
Q 039757 346 ILLGACSFHGN----VEMGERVTRKVLEMERGNGGDYVLMYNILA---G--VGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 346 ~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~--~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
.|+.. ..++ .+.++.+++.+.+.+.........|...+. . ......+.++++.+.+.|++..+
T Consensus 146 ~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 146 ALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred HHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 66544 3333 356778888888877664433333333332 1 12255788999999999887543
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.21 E-value=7.6 Score=39.86 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=102.9
Q ss_pred hCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc--CCCchHHHHhHHHHH----hhcCChhHHHHHHhhhhhcC
Q 039757 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS--TEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~--~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~ 220 (415)
.++++.|+.-+.++. ...|.-.++.-.+.|.+.+|+ ..|+...+..+..+| ...+.+++|--.|+..-+.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl- 968 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL- 968 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-
Confidence 467777777777775 334445556666677777777 677777766655544 5567777777777655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh--hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL--VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
.-.+.+|..+|+|.+|..+-.++... .+. .+-..|+..+...+++-+|-+++.+-... |..
T Consensus 969 ---------ekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~~---- 1031 (1265)
T KOG1920|consen 969 ---------EKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PEE---- 1031 (1265)
T ss_pred ---------HHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HHH----
Confidence 23567788888888888888877652 121 22356777788888888888887776542 322
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
.+..|++...+++|.++.....
T Consensus 1032 ---------------av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1032 ---------------AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ---------------HHHHHhhHhHHHHHHHHHHhcc
Confidence 4445788888999988876555
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.12 E-value=4.2 Score=36.55 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=105.7
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHH
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFA 270 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~ 270 (415)
..+..+.|+++............. + +...+.++... +.|+++++....+++... ......|........
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~--~-~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDS--P-EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCC--h-hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 456778888888666666555431 2 45555555433 788999888888877665 111122222222222
Q ss_pred cc---CchHHHHHHHHHH--------------Hh--cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 271 MH---GMGKAAVENFERM--------------QK--VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 271 ~~---~~~~~A~~~~~~m--------------~~--~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
+. .+.+++..+.... .. .+..++..++..++.-- ..++
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R-----------------------~~~l 136 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLR-----------------------RLVL 136 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-----------------------HHHH
Confidence 22 1222333222111 10 12233333333322210 0011
Q ss_pred hcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC----CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG----NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+........+|..+...+.+.|+++.|...+.++...++. .+......+..+...|+..+|...+++.....
T Consensus 137 ~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 137 SLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111111235568899999999999999999999999886633 45677778889999999999999998888733
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.00 E-value=7.1 Score=38.76 Aligned_cols=248 Identities=16% Similarity=0.065 Sum_probs=135.1
Q ss_pred HHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCCCchHHHH----hHHHH--HhhcCChhHHHHH
Q 039757 141 ITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSEITIL----AVLPA--IWQNGAVRNCQLI 212 (415)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~ll~~--~~~~~~~~~a~~~ 212 (415)
|...++.|+++.|-+++++... .+. .--.+|.++.+ ..|++...+ .++.+ .....++.+|..+
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~-~~lsll~~~~~--------~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~l 437 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNG-SELSLLLAWLK--------ALPAELLASTPRLVLLQAWLLASQHRLAEAETL 437 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcc-cchHHHHHHHH--------hCCHHHHhhCchHHHHHHHHHHHccChHHHHHH
Confidence 3445567777777777776621 000 01112222222 234433322 22222 3557788888888
Q ss_pred HhhhhhcCCCCC---C---HHHHHHHH-HHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHHccCchHHHH
Q 039757 213 HGYGEKRGFNAF---D---IRVSNCLI-DTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 213 ~~~~~~~~~~~~---~---~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
..++...-..|. . ...++.|- ......|++++|.++-+..... .+.+..+..+..+..-.|++++|.
T Consensus 438 i~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al 517 (894)
T COG2909 438 IARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQAL 517 (894)
T ss_pred HHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHH
Confidence 888776522221 1 11233332 2344568999999998887776 234566777888888899999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH--HHHHhcCCCC----C----cCHHHHHHHHH
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA--EKIALGIPSE----I----TDVVVRRILLG 349 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~~~~~----~----p~~~~~~~l~~ 349 (415)
.+.++..+.--+-+...+...... .-...+...|+...| +..|...... . +-..++..+..
T Consensus 518 ~~~~~a~~~a~~~~~~~l~~~~~~---------~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 518 ALMQQAEQMARQHDVYHLALWSLL---------QQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 988887664333444444332211 012234556633333 2222222111 1 23345555666
Q ss_pred HHhhcCChHHHHHHHHHHHHcc----cCCC---ccHHHHHHHHHhcCchhhHHHHHHHHhhhccccC
Q 039757 350 ACSFHGNVEMGERVTRKVLEME----RGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 409 (415)
++.+ .+.+..-.....+.+ +.+. ..+..|+..+...|+.++|...++++......+.
T Consensus 589 ~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 589 AWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 6655 333333333333322 2211 2334678888899999999999999987665553
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.92 E-value=1.2 Score=35.43 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=56.0
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (415)
...+...|++++|+..++..... |....+..++.- .|.......|.+|+|+..++......-......
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l---------RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~e 163 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL---------RLARVQLQQKKADAALKTLDTIKEESWAAIVAE 163 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHhccccccHHHHHHH
Confidence 34556677777777777766542 555555555443 255666677777777777776665411122223
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
.-...+...|+-++|..-|++..+.+
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33445667777777777777776665
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.87 E-value=4 Score=35.40 Aligned_cols=103 Identities=8% Similarity=-0.104 Sum_probs=66.7
Q ss_pred HHHHhHHHHHhhcCCh---hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHH
Q 039757 191 ITILAVLPAIWQNGAV---RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 266 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 266 (415)
.++..+..++...+.. ++|..+++.+.... |..+.++..-+..+.+.++.+.+.+.+.+|...-+ ....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 3455566666655544 45666777776663 33456666667777778999999999999988632 344566666
Q ss_pred HHHHc--cCchHHHHHHHHHHHhcCCCCChh
Q 039757 267 SGFAM--HGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 267 ~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
..+.. ......|...+..+....+.|...
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55522 233456777777777665666664
No 272
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.84 E-value=1.9 Score=36.70 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+++...+.|...|.+.+|.++.++....+|-+...+..|+..|...|+--.|..-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4555667889999999999999999999999999999999999999998777777776643
No 273
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.83 E-value=1.5 Score=36.82 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=76.0
Q ss_pred CChhHHHHHhcccCC--C-----chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCC
Q 039757 117 GFLKDSSKLFDELPE--R-----NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTE 187 (415)
Q Consensus 117 g~~~~a~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~ 187 (415)
.++++|+.-|+...+ + .....-.+|+.+.+.|++++....+.++.. .+.+| ..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT------------------rN 102 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT------------------RN 102 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh------------------cc
Confidence 356666666665543 1 223444566777777777777777776641 11111 12
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----C--
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----R-- 256 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-- 256 (415)
.++...++++.-.+...+.+.-..+|+.-.+. .-...-..+-+-|...|...+.+.+..++++++... +
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 23334444444444444433333333222211 000001122344566666667777777777666544 1
Q ss_pred ---C---ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 257 ---K---NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 257 ---~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
. -...|..=|+.|....+-.+-..+|++...
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 1 123466667777777666666666666543
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.80 E-value=3.2 Score=34.08 Aligned_cols=187 Identities=16% Similarity=0.025 Sum_probs=135.9
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--h-CCChhhHHHHHHHHHccCchHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV--E-RKNLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
+....+...+...............+......+...+++..+...+..... . ......+......+...++++.+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 444555555555555422111357778888899999999999999988774 2 3455667788888888889999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHH-HhHhcCCHHHHHHHHhcCCCCCc----CHHHHHHHHHHHhhcC
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD-MLGRAGRLEQAEKIALGIPSEIT----DVVVRRILLGACSFHG 355 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~ 355 (415)
.+.........+...... ... .+...|+++.|...++......| ....+......+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 117 LLEKALALDPDPDLAEAL---------------LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHcCCCCcchHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 999988754443111111 222 58899999999999987744323 2233444444467789
Q ss_pred ChHHHHHHHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 356 NVEMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+.+...+.......+. ....+..+...+...++++.|...+.......
T Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999888 68889999999999999999999998876644
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.80 E-value=5.5 Score=36.81 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCH
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDV 341 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~ 341 (415)
..+..++.+.|+.++|.+.+++|.+. .|.....+. ...|+..+...+++.++..++.+..+. .|..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke--~p~~~~l~I-----------renLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKE--FPNLDNLNI-----------RENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh--CCccchhhH-----------HHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 44667777889999999999999874 244333332 334788899999999999999887643 3433
Q ss_pred H--HHHHHHHHHhhcCC---------------hHHHHHHHHHHHHcccC
Q 039757 342 V--VRRILLGACSFHGN---------------VEMGERVTRKVLEMERG 373 (415)
Q Consensus 342 ~--~~~~l~~~~~~~~~---------------~~~a~~~~~~~~~~~~~ 373 (415)
. .|+..+-.....++ -..|.+.+.++.+.+|.
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3 55554433222222 12356778888877765
No 276
>PRK11906 transcriptional regulator; Provisional
Probab=93.72 E-value=5.6 Score=36.56 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=84.9
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~ 281 (415)
..+..+|.+.-+..++. .|.|+.....+..+....++.+.|..+|++.....|| ..+|....-.+.-+|+.++|...
T Consensus 317 ~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556677777777776 5779999999999889999999999999999888775 45566666677788999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 282 FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
+++..+. .|....-.. ++- .++.|+..+ +++|.+++-+-
T Consensus 395 i~~alrL--sP~~~~~~~-~~~----------~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQL--EPRRRKAVV-IKE----------CVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHhcc--CchhhHHHH-HHH----------HHHHHcCCc-hhhhHHHHhhc
Confidence 9996653 555544332 221 455666654 78888887543
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.61 E-value=0.32 Score=38.79 Aligned_cols=92 Identities=14% Similarity=-0.007 Sum_probs=67.3
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC--Cc--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHH----H
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE--IT--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYV----L 380 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~----~ 380 (415)
+..+.+.|++.|+.+.|.+.|.++.+. .| -...+-.+|+.....+++..+...+.++...... +...-+ .
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 445888999999999999999998876 22 3346778899999999999999999888765433 222111 2
Q ss_pred HHHHHHhcCchhhHHHHHHHHh
Q 039757 381 MYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
-+-.+...|+|.+|-+.|-+..
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHhchHHHHHHHHHccC
Confidence 2223456889999998885543
No 278
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=7.7 Score=37.69 Aligned_cols=360 Identities=11% Similarity=0.046 Sum_probs=190.4
Q ss_pred HhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHH--------HHHHhhcCCCCCCCCCCchhHHHHHHH------HHh
Q 039757 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQ--------LQQIYTHSHSPLRPLFDSFTYSFLIRT------CVT 80 (415)
Q Consensus 15 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~~p~~~~~~~~~~l~~~------~~~ 80 (415)
+.+.|.-.|-...|.+.=..=-+++..++.+..+.+ .++.....+. +..-..|+++ +.+
T Consensus 329 IF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~-------pe~QK~LL~AAsfGk~~l~ 401 (829)
T KOG2280|consen 329 IFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQ-------PEEQKSLLRAASFGKASLR 401 (829)
T ss_pred HhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccC-------HHHHHHHHHHHhhcccccc
Confidence 445566667777777776666666666666555542 1110011222 2344444443 233
Q ss_pred cCCCchHHHHHHHH--------HHcCCCCchhhHHH-----HHHHHHcCCChhHHHHHhcccCCCc---hhhHHHHHHHH
Q 039757 81 LSYPNLGTQLHAVI--------SKVGFQSHVYVNTA-----LVNMYVSLGFLKDSSKLFDELPERN---LVTWNVMITGL 144 (415)
Q Consensus 81 ~~~~~~a~~~~~~~--------~~~g~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~ 144 (415)
..++++-..+-..+ ...|++.+..-|.. +|+-+...+.+..|.++-+.+..|- ...|.....-+
T Consensus 402 ~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~k 481 (829)
T KOG2280|consen 402 TPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRK 481 (829)
T ss_pred cCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHH
Confidence 34555444433332 23466666655544 4566777788899998888877654 44555555556
Q ss_pred HhhC---CHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCcc----CCCc----------hHHHHhHHHHHhhcCC
Q 039757 145 VKWG---ELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAS----TEPS----------EITILAVLPAIWQNGA 205 (415)
Q Consensus 145 ~~~g---~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~----~~~~----------~~~~~~ll~~~~~~~~ 205 (415)
.+.. +-+-+..+=+++.. ....+|..+.+--...|+.+-|. ..|+ -..+...+.-+...|+
T Consensus 482 I~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d 561 (829)
T KOG2280|consen 482 IKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGD 561 (829)
T ss_pred HhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCC
Confidence 5552 22233333344443 34456766666666677766665 2222 2234445555666777
Q ss_pred hhHHHHHHhhhhhcC----------CCCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--Hhhhh---CCChhhH
Q 039757 206 VRNCQLIHGYGEKRG----------FNAFDIRVSNCLID--------TYAKCGCIFSALKLFE--DISVE---RKNLVSW 262 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~----------~~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~--~~~~~---~~~~~~~ 262 (415)
.+....++-.+...- ..|.....|.-+++ .+-..++-..+..-|. ..... .+-....
T Consensus 562 ~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l 641 (829)
T KOG2280|consen 562 TDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL 641 (829)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH
Confidence 777766665555431 01112222221111 0000111111111110 00000 0000111
Q ss_pred HHHHHHHHccCchH---HH-------HHHHHHHHh-cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 263 TSIISGFAMHGMGK---AA-------VENFERMQK-VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 263 ~~li~~~~~~~~~~---~A-------~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
......+.+..... +| +.+.+.+.. .|......+. +.-+.-+...|+..+|.++-
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl--------------~dTv~~li~~g~~k~a~ql~ 707 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSL--------------HDTVTTLILIGQNKRAEQLK 707 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcH--------------HHHHHHHHHccchHHHHHHH
Confidence 12223333332211 11 112222221 1222233333 33455577889999999999
Q ss_pred hcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
++.+- ||-..|-.-+.++...+++++-+++-+.. .++.-|.-.+.+|.+.|+.+||..++.+..
T Consensus 708 ~~Fki--pdKr~~wLk~~aLa~~~kweeLekfAksk-----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 708 SDFKI--PDKRLWWLKLTALADIKKWEELEKFAKSK-----KSPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhcCC--cchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CCCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 88875 69999999999999999999877665543 236788899999999999999999986654
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.42 E-value=0.26 Score=26.50 Aligned_cols=29 Identities=28% Similarity=0.137 Sum_probs=14.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
|..+...+...|++++|++.|++..+..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44445555555555555555555555444
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.41 E-value=0.16 Score=28.06 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=19.7
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 377 DYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888744
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.39 E-value=0.12 Score=28.11 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSAL 246 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~ 246 (415)
.|.+...|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777888888888888777775
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.31 E-value=2.8 Score=31.88 Aligned_cols=52 Identities=6% Similarity=-0.151 Sum_probs=26.5
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 256 (415)
..+.+.++.++..+.-. .|.....-..-...+...|+|++|.++|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 55566666666555554 23222222222333555666666666666665543
No 283
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=2 Score=40.37 Aligned_cols=152 Identities=14% Similarity=0.037 Sum_probs=103.4
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc-CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (415)
.-.|+++.|..++-.+.+ ..-+.+...+.+.|-.++|+ ..+|..... ....+.|+++.|.++..+..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s~D~d~rF---elal~lgrl~iA~~la~e~~------ 664 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELSTDPDQRF---ELALKLGRLDIAFDLAVEAN------ 664 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcCCChhhhh---hhhhhcCcHHHHHHHHHhhc------
Confidence 446777777776666653 23455666677777777776 233332211 22245788888877765432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. -|. .|.
T Consensus 665 -s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-AF~----- 729 (794)
T KOG0276|consen 665 -SEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-AFL----- 729 (794)
T ss_pred -chHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-HHH-----
Confidence 667799999999999999999999987765 77788888888887766666566555543 222 222
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
+|...|+++++.+++.+-..
T Consensus 730 -------------~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 730 -------------AYFLSGDYEECLELLISTQR 749 (794)
T ss_pred -------------HHHHcCCHHHHHHHHHhcCc
Confidence 27788999999999876543
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.19 E-value=0.28 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+|..+...|...|++++|+..|+++++.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455566666666666666666666666554
No 285
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.15 E-value=4.2 Score=37.61 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=81.7
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 265 (415)
...|.+....++..+.......-++.+-.+|..-|- +...|..++.+|..+ ..+.-..+|+++.+..-|-.....-
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Confidence 444555555555555555555555555555555431 444455555555555 3344445555444432222222222
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---CcCHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVV 342 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 342 (415)
+..+...++.+++...|.+.... +.|.... +.+.- .|..|+..- ..+.|...++...+... ..-..
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yr-fI~~~q~--~~i~e------vWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~V 206 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYR-FIPRRQN--AAIKE------VWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSV 206 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHH-hcchhhh--hhHHH------HHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHH
Confidence 22222334455555555554432 1111100 00000 011122111 23444444444444333 11223
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
.+.-+-.-|....++.+|++++..+++.+-.+.-+-..++.-+
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 3334444555666666677766666666665555555555544
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=2.1 Score=35.44 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=58.2
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC------CcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHcccC----CCccHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE------ITDV-VVRRILLGACSFHGNVEMGERVTRKVLEMERG----NGGDYV 379 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 379 (415)
|+.....|.+..++++|-..+.+-... .|+. ..|...|-.+.-..|+..|.+.++.-.+.+-- +..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344566688888888876665433222 3333 24555666677778999999999887665522 456777
Q ss_pred HHHHHHHhcCchhhHHHHHH
Q 039757 380 LMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~ 399 (415)
.|+.+|- .|+.+++..++.
T Consensus 233 nLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHhc-cCCHHHHHHHHc
Confidence 8887774 677777776663
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.00 E-value=0.24 Score=27.31 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 039757 229 SNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
+..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555666666666666666655
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=6 Score=34.57 Aligned_cols=117 Identities=11% Similarity=-0.007 Sum_probs=79.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc---CCCCchhhHHHHHHH
Q 039757 36 SLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV---GFQSHVYVNTALVNM 112 (415)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~ 112 (415)
.-+|+..+|-..++++. ..-+. |..+++..-.+|...|+.+.-...++++.-. ++|..+.+...+.-+
T Consensus 114 ~~~g~~h~a~~~wdklL---~d~Pt------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLL---DDYPT------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hccccccHHHHHHHHHH---HhCch------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34567777777777777 44444 7777777778888888888888888777543 333334444455556
Q ss_pred HHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 113 YVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
+..+|-+++|++.-++..+ -|.-.-.+....+-..|++.++.++..+-.
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 6778888888888877665 244455566666777788888888776654
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.90 E-value=13 Score=38.36 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCchhhHHHHHHHHHcCC--ChhHHHHHhcccC
Q 039757 100 QSHVYVNTALVNMYVSLG--FLKDSSKLFDELP 130 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~ 130 (415)
.|+ .....+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455 55566888898888 6777877776665
No 290
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.89 E-value=0.82 Score=38.59 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=81.4
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHcc-----CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc----chHHHH
Q 039757 245 ALKLFEDISVERKNLVSWTSIISGFAMH-----GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----HYGCLV 315 (415)
Q Consensus 245 A~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----~~~~li 315 (415)
.++.|..+...+.|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|..||..+.+... .+....
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3455555554446777788888777653 5677788889999999999999999999998776654 333344
Q ss_pred HHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCC
Q 039757 316 DMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGN 356 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~ 356 (415)
-.|-++ -+-+++++++|... .||..+-..|+.++.+.+-
T Consensus 133 ~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 444333 34578889988876 8999999999999887664
No 291
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.77 E-value=0.23 Score=38.07 Aligned_cols=129 Identities=10% Similarity=0.139 Sum_probs=84.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
.++..+.+.+.+.....+++.+. ..+.. - +....+.++..|++.++.+...++++.. +..-...+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~---~~~~~--~---~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~ 76 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALV---KENKE--N---NPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKA 76 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHH---HTSTC------SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH---hcccc--c---CHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHH
Confidence 56788888999999999999998 55544 3 7888999999999998888888887721 11233446
Q ss_pred HHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
+..|.+.|.+++|.-++..+...+. .+..+...++++.|.+.+.+. .+...|..+++.+...+.
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHhcchHHHHHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 6777777777777777776653111 111133345555555444444 346677777777766554
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.71 E-value=8.4 Score=35.78 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=30.4
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
+.+.+..++++|... ..+.-..+++.+++-.+ .+...-..|...|.+ ++.+.+..+|.++..
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 344555555555555 44444555555555422 133333444444444 555555555555544
No 293
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.70 E-value=11 Score=37.09 Aligned_cols=48 Identities=0% Similarity=-0.143 Sum_probs=26.1
Q ss_pred HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHH
Q 039757 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 399 (415)
.+...|+...|...+..+... .+......+...-.+.|.++.++....
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 344556666777666666653 223344445555555666655555443
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.54 E-value=0.45 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4445555555555555555555555543
No 295
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.49 E-value=11 Score=36.82 Aligned_cols=45 Identities=7% Similarity=0.039 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhh
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKW 147 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 147 (415)
+..+|. +|-.|.|+|++++|.++..+..+ .....+-..+..|+..
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 344554 67778889999999888833332 3334556666666554
No 296
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.38 E-value=2.8 Score=31.85 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=72.5
Q ss_pred hhccCCcchHH--HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC-CchHHHHHH
Q 039757 16 LTTNSLLHHTL--LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY-PNLGTQLHA 92 (415)
Q Consensus 16 ~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 92 (415)
+......+++. ..|.++.-....+++...+.+++.+.-.....+.+-. +...|..++.+..+..- --.+..+|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~---~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL---DNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc---ccchHHHHHHHHccChHHHHHHHHHHH
Confidence 34344666665 4789999888889999888888887532222111112 77899999999976664 345788999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHcC
Q 039757 93 VISKVGFQSHVYVNTALVNMYVSL 116 (415)
Q Consensus 93 ~~~~~g~~~~~~~~~~li~~~~~~ 116 (415)
.+++.+.+++..-|..+|.++.+-
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 999888899999999999988654
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.35 E-value=0.38 Score=27.30 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCC
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 60 (415)
..+++.+...|...|++++|..++++...+.+.-..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999865444333
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.28 E-value=1.4 Score=40.09 Aligned_cols=93 Identities=12% Similarity=-0.055 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
...|+++.+.+.+...... .....+...+++.....|+++.|...-..|+.....+++........-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3455555555555443332 223445555555555556666666666665555555444444333333444555566655
Q ss_pred HHHHhhhccccCCC
Q 039757 398 RRVMDERNALKFPG 411 (415)
Q Consensus 398 ~~~m~~~~~~~~~~ 411 (415)
+++....+.+...|
T Consensus 414 wk~~~~~~~~~~~g 427 (831)
T PRK15180 414 WKRVLLLNPETQSG 427 (831)
T ss_pred HHHHhccCChhccc
Confidence 55555544444444
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.94 E-value=9 Score=34.39 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=102.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--------CchhhHHHHHHHHH
Q 039757 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--------RNLVTWNVMITGLV 145 (415)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~ 145 (415)
...+.-+.|+++...+........ .++...+.++... +.++.+++...++.... -....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355677888888855555554322 2455556555443 78888888888877653 12223333333333
Q ss_pred hhCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc-CCC
Q 039757 146 KWGELEYARSLFEEMPCR--NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR-GFN 222 (415)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 222 (415)
+...+.+..++.+-.... +......++..+...=. . ..++..++..++. +-..+... ...
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~--~--~~~~~~~~~~il~-------------~R~~~l~~~~~~ 142 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLP--N--MQDDFSVWEPILS-------------LRRLVLSLILLP 142 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH--H--hccchHHHHHHHH-------------HHHHHHhcccch
Confidence 333333333333322111 01122222222211100 0 1222223322222 11111110 112
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----CChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-----KNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.....++..++..+-+.|+++.|...+..+.... ..+...-.-+..+...|+..+|+..+++....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2256778888889999999999999998887642 13344555567777888989999988888773
No 300
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.86 E-value=9.3 Score=34.40 Aligned_cols=79 Identities=5% Similarity=-0.084 Sum_probs=53.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcC---CCCchhhHHHHHHHHHc---CCChhHHHHHhcccC-C---Cchhh
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG---FQSHVYVNTALVNMYVS---LGFLKDSSKLFDELP-E---RNLVT 136 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~-~---~~~~~ 136 (415)
+..+...++-+|....+++...++.+.+.... +.-...+--...-++.+ .|+.++|++++..+. + +++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 55556667777888889999999999887642 11122223344555667 788999999887733 2 56777
Q ss_pred HHHHHHHHH
Q 039757 137 WNVMITGLV 145 (415)
Q Consensus 137 ~~~li~~~~ 145 (415)
|..+...|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 877777663
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.86 E-value=0.46 Score=37.85 Aligned_cols=90 Identities=12% Similarity=-0.005 Sum_probs=67.8
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT------DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
+...|++++|..-|.+....-| ....|..-..++.+.+.++.|+.-..+.++.+|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 5677888888888776655422 1223444455678888999999999999999888777777778889889999
Q ss_pred hhHHHHHHHHhhhccc
Q 039757 392 VDAERLRRVMDERNAL 407 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~~ 407 (415)
++|++=++++.+....
T Consensus 185 eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 185 EEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999888888766543
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.83 E-value=4.3 Score=32.45 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=87.7
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
.|..++.... .+.+ +.....+.+... +...+|..+-.- .+...+..+|++++|..-++..... |.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL---------~lAk~~ve~~~~d~A~aqL~~~l~~-t~ 120 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAAL---------ELAKAEVEANNLDKAEAQLKQALAQ-TK 120 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHH---------HHHHHHHhhccHHHHHHHHHHHHcc-ch
Confidence 3555555443 3444 555566666653 334444433221 2677899999999999999876655 33
Q ss_pred HHHH-----HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 341 VVVR-----RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 341 ~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
...+ -.|.+.....|.+++|+..++...+.+.. ......-++++...|+-++|+.-+++....+
T Consensus 121 De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 121 DENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3333 34566788899999999999876654322 2334567889999999999999999998887
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=3.5 Score=33.96 Aligned_cols=19 Identities=5% Similarity=-0.041 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHHHcccC
Q 039757 355 GNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~ 373 (415)
+++.+|+++|+++......
T Consensus 168 eqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444444444444443333
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.59 E-value=0.67 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.142 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
.+..+..+|...|++++|.+.|++....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555666666666666555543
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.57 E-value=0.9 Score=34.43 Aligned_cols=70 Identities=14% Similarity=0.037 Sum_probs=40.0
Q ss_pred HhcCCHHHHHHHHhcCCCCCcC---HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 319 GRAGRLEQAEKIALGIPSEITD---VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
...++.+++..++..+.--.|+ ..++. ...+...|++++|.++|+.+.+..+..+..-..+..++...|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4467777777777666544343 33333 2335677788888888887777665443333333334444444
No 306
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.46 E-value=28 Score=39.03 Aligned_cols=137 Identities=10% Similarity=0.002 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCCchHHHHHHHH----HHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcc-cCCCchhhHHHHHHHHHhh
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVI----SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE-LPERNLVTWNVMITGLVKW 147 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~ 147 (415)
++..+-.+.+.+.+|...++.- ++.. -....+-.+...|+.-+++|...-+... ..+|+ ...-|-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 5556667778888888888873 2211 1233344455589999999888877763 33343 22334456678
Q ss_pred CCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhccCCCCcc---------CCCchHH-HHhHHHHHhhcCChhHHHHHHh
Q 039757 148 GELEYARSLFEEMPC--RN-VVSWTGILDGYTRMNRSNGAS---------TEPSEIT-ILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 148 g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~---------~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
|+|..|...|+.+.+ |+ ..+++-++......|.++... ..+.... ++.-..+-.+.++++..+..+.
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999985 33 445666666655555555444 1111111 2223334466777777666665
No 307
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.44 E-value=7.7 Score=32.59 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
+.+.|.+.|.+..|..-++.|.+.-|+. ...-.+..+|...|..++|...-+-+... .|+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 4566777777777777777777763322 23555666777777777777766666554 45554
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.33 E-value=12 Score=34.53 Aligned_cols=90 Identities=7% Similarity=-0.069 Sum_probs=56.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
|.--...||...|-+-+..... ..... | +....-+. .....|+++.+.+.+....+. +.....+...++.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr--~~~~~--p---~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r 365 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALR--NQQQD--P---VLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLR 365 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHH--hCCCC--c---hhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHH
Confidence 4444557887776654444441 22222 3 44433333 345678888888888776432 3445667777888
Q ss_pred HHHcCCChhHHHHHhcccCC
Q 039757 112 MYVSLGFLKDSSKLFDELPE 131 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~ 131 (415)
...+.|++++|..+-+-|..
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLS 385 (831)
T ss_pred hhhchhhHHHHHHHHHHHhc
Confidence 88888899888888777653
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.22 E-value=7.2 Score=37.68 Aligned_cols=179 Identities=12% Similarity=0.016 Sum_probs=109.9
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHHccC-
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDT-----YAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFAMHG- 273 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~~- 273 (415)
...+...++...+.| +......+..+ +....+.+.|..+|+.+.+. .-+.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 567888888888886 33333333333 34556999999999988661 124456667777777743
Q ss_pred ----chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh---cCCHHHHHHHHhcCCCCCcCHHHHHH
Q 039757 274 ----MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR---AGRLEQAEKIALGIPSEITDVVVRRI 346 (415)
Q Consensus 274 ----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~ 346 (415)
+.+.|..++.+.-..|. |+...+.. ..|.. ..+...|.++|...... -....+-.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg----------------~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A~~~ 365 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLG----------------VLYETGTKERDYRRAFEYYSLAAKA-GHILAIYR 365 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHH----------------HHHHcCCccccHHHHHHHHHHHHHc-CChHHHHH
Confidence 67789999998888764 34433222 11221 24578999999887766 23333333
Q ss_pred HHHHHh----hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 347 LLGACS----FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 347 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
+..+|. ...+.+.|..++++..+.+.+...--......+.. ++++.+.-.+..+...|..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 333222 34578999999999999884322222222233333 7777777776666655543
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.02 E-value=0.49 Score=40.99 Aligned_cols=88 Identities=10% Similarity=-0.004 Sum_probs=67.5
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
..-|.++|++++|++.|.......| +.+++..=..+|.+.+.+..|+.-.+.++..+..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3448899999999999987776657 888888888899999999999888888887766555566666666666677777
Q ss_pred HHHHHHHHh
Q 039757 394 AERLRRVMD 402 (415)
Q Consensus 394 A~~~~~~m~ 402 (415)
|.+-.+...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 766555443
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=18 Score=35.88 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=60.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
...+.+-+.|++++|...+-+-+ |.. ++ ..+|.-+........-..+++.+.+.|+. +...-..|
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI-----~~l------e~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlL 437 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETI-----GFL------EP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLL 437 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHc-----ccC------Ch---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHH
Confidence 33445566899999998887765 222 11 23566666777777778888888888864 55556678
Q ss_pred HHHHHcCCChhHHHHHhcccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~ 130 (415)
+.+|.+.++.++-.++.+...
T Consensus 438 LncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCC
Confidence 899999988887777776655
No 312
>PRK09687 putative lyase; Provisional
Probab=90.90 E-value=10 Score=32.94 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=12.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
..+.++...|+. +|...+..+....
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~ 264 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKF 264 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhC
Confidence 344455555553 4555555554433
No 313
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=3.1 Score=35.31 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred HHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----Cc
Q 039757 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----IT 339 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p 339 (415)
+..-..+.+++++|+..+.++...|+..|..+.+.-=.+ ...+...|...|+...-.+......+. .|
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~t-------vlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~ 81 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEAT-------VLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP 81 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHH-------HHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch
Confidence 344566788899999999999999988888877653333 233677788888776655544322211 22
Q ss_pred -CHHHHHHHHHHHhh-cCChHHHHHHHHHHHHcccCCC------ccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 340 -DVVVRRILLGACSF-HGNVEMGERVTRKVLEMERGNG------GDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 340 -~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
......+|+.-+-. ...++..++++....+.....- ..-..++..+.+.|++.+|..++..+.
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33455666665543 3456777777777666543322 223357888999999999998776554
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=1.6 Score=37.50 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-----KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
|....+...++..-....++++++..+-++...+ ++... .+.++.+ -.-++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3355555666666666678999999988887762 22211 1222222 234678999999999999999999998
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
.. +++.+.+.++..+|.++.-.|..
T Consensus 139 c~--------------l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CL--------------LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HH--------------HHHHHHhcccHHHHHHHHHHHHH
Confidence 88 66668888888888877655543
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.99 E-value=0.97 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+|..+...|...|++++|.+.|++..+..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666655544
No 316
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.97 E-value=6.5 Score=29.29 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
.......++.....|+-+.-.+++.++... .+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333444455555556555555555555422 34555555555666666666666666665555543
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=21 Score=35.09 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=67.4
Q ss_pred HHcCCChhHHHHHhcccCC--C---chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc--
Q 039757 113 YVSLGFLKDSSKLFDELPE--R---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-- 185 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-- 185 (415)
+.+.+.+++|+.+-+.... + -...+...|..+.-.|++++|-...-.|...+..-|.-.+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 3444455555555444432 1 12234455555555555555555555555555555555555554444433332
Q ss_pred -----CCCchHHHHhHHHHHhhcCChhHHHHH------------------HhhhhhcCCCCCCHHHHHHHHHHHHhcCCH
Q 039757 186 -----TEPSEITILAVLPAIWQNGAVRNCQLI------------------HGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242 (415)
Q Consensus 186 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (415)
...+...|..++..+.. .+...-.++ ..+..+. .. +...-..|+..|...+++
T Consensus 446 lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se-~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 446 LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SE-STALLEVLAHLYLYDNKY 521 (846)
T ss_pred CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--cc-chhHHHHHHHHHHHccCh
Confidence 12233444444444433 111111111 1111111 11 333445588899999999
Q ss_pred HHHHHHHHHhhh
Q 039757 243 FSALKLFEDISV 254 (415)
Q Consensus 243 ~~A~~~~~~~~~ 254 (415)
++|..++-+...
T Consensus 522 ~~Al~~ylklk~ 533 (846)
T KOG2066|consen 522 EKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHhccC
Confidence 999999887765
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.71 E-value=0.65 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 379 VLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 379 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..++.++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.65 E-value=8.5 Score=30.19 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=19.3
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
.+.+.+.++.+ +...+..+++.+.+.|++.....++.
T Consensus 17 irSl~~~~i~~-~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 17 IRSLNQHNIPV-QHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 33334444433 55566666666666666555444443
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.24 E-value=24 Score=34.76 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCC---chhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQS---HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 150 (415)
++.+.+.+.+++|+...+... |..| -......+|+.+...|++++|-...-.|...+..-|---+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 455666677777777666542 3344 3456777888888888888888777776654444444444444444443
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.22 E-value=0.82 Score=24.17 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
-.+..++.+.|++++|.+.|+++++..|.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34566777788888888888888887764
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.91 E-value=2.2 Score=34.71 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----CChhhHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER----KNLVSWTSIIS 267 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~ 267 (415)
|.+..++.+.+.+...++....+.-++. .|.+......+++.+|-.|+|++|..-++-.-... +....|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3444556666777788888877777776 57677777888888888888888887776654442 23445666665
Q ss_pred H
Q 039757 268 G 268 (415)
Q Consensus 268 ~ 268 (415)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.91 E-value=0.57 Score=23.53 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=15.7
Q ss_pred cHHHHHHHHHhcCchhhHHHHHH
Q 039757 377 DYVLMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~ 399 (415)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777777777777777664
No 324
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=18 Score=32.49 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHH------------HHHHHhhcCChHHHHHHHHHHHHcccCCC-----
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI------------LLGACSFHGNVEMGERVTRKVLEMERGNG----- 375 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 375 (415)
.|..-+..+|++++|..++.+..-. ||.+ -++.|...+|+-.|--+-+++.......+
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE-----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE-----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh-----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 4677888999999999998876544 3333 36678888999999888888877776533
Q ss_pred --ccHHHHHHHHHhcCchhhHHHHHHHHhhhccccC
Q 039757 376 --GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409 (415)
Q Consensus 376 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 409 (415)
.-|..+++.....+.+=++.+.++.....|....
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 3577788888888999999999988877665544
No 325
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=88.60 E-value=11 Score=30.09 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-----------C-----CChhhHHHHHHHHHccCchHHHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISVE-----------R-----KNLVSWTSIISGFAMHGMGKAAVENFER 284 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~-----------~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~ 284 (415)
+++..|.+.-+|.+..++++.|.+. + +--..-|.-...|.++|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3455566666666666666665443 1 2234466666777777777777777763
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.58 E-value=4.6 Score=28.41 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=39.7
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHH
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIIS 267 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~ 267 (415)
.-+..+-+..+......| ++.+..+.+++|-+.+++..|.++|+.++..- +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP-~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVP-EPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 335566666777776666 88888888888888888888888888877662 22225666554
No 327
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.33 E-value=13 Score=30.50 Aligned_cols=165 Identities=9% Similarity=-0.150 Sum_probs=94.3
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 269 (415)
...||-+.--+...|+++.|.+.|+...+. +|....+...-.-++--.|+++.|.+-|.+--...|+- .|.+|---.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D-PfR~LWLYl 175 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND-PFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC-hHHHHHHHH
Confidence 445666666677889999999999988887 45444433322223444688888887776655543321 233332222
Q ss_pred H-ccCchHHHHHHHH-HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcCHH
Q 039757 270 A-MHGMGKAAVENFE-RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITDVV 342 (415)
Q Consensus 270 ~-~~~~~~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~~~ 342 (415)
. ..-++.+|..-+. +..+ .|...|...|-. .|.-.=..+.+.+-....... ..-..
T Consensus 176 ~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~-------------~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTE 238 (297)
T COG4785 176 NEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVE-------------FYLGKISEETLMERLKADATDNTSLAEHLTE 238 (297)
T ss_pred HHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHH-------------HHHhhccHHHHHHHHHhhccchHHHHHHHHH
Confidence 2 2336667765443 3332 354555543332 232222223332222222211 11235
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
||--|..-+...|+.++|..+|+..+..++-+
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 77778888899999999999999998877654
No 328
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.18 E-value=18 Score=32.68 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=49.7
Q ss_pred CcchH-HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc
Q 039757 21 LLHHT-LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97 (415)
Q Consensus 21 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 97 (415)
++-++ ..+..+...|...|+++.|++.+.+........-. ....|-.+|....-.|+|.....+..+..+.
T Consensus 145 iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 145 IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 44433 46888889999999999999999986632222211 4556777777777888888777777776553
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.12 E-value=1.3 Score=24.94 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666665543
No 330
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=17 Score=31.71 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=78.4
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChh
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLV 260 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 260 (415)
..|...++.+.. .+....++-.+..+...+.-+...-....-.....||+.|+.+.|.+.+++..+. +.|+.
T Consensus 67 ~~D~~~l~~m~~--~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKK--ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 344444444443 1223344444444555544223324556666778899999999999999887664 24544
Q ss_pred hHHHHHH-HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 261 SWTSIIS-GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 261 ~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
.+.+-+. -|..+.-..+-++..+.|.+.|...+...--.+-.+ + .+....++.+|-.+|-+....
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~G----------l--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQG----------L--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHH----------H--HHHHHHhHHHHHHHHHHHccc
Confidence 4433332 344444556666677777777877766543332222 1 133456788888888666544
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.06 E-value=9.4 Score=34.48 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC-------------------
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI------------------- 334 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------------- 334 (415)
.++++...|......+ |......+++.+...-+++-.+...+...|+...|.+++++.
T Consensus 9 ~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~ 85 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNL 85 (360)
T ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3445555555554432 333333333333322223444667788888888776654432
Q ss_pred CC---C----Cc-CHHHHHH---HHHHHhhcCChHHHHHHHHHHHHcccC-CCccHHHHHHHH-HhcCchhhHHHHHHHH
Q 039757 335 PS---E----IT-DVVVRRI---LLGACSFHGNVEMGERVTRKVLEMERG-NGGDYVLMYNIL-AGVGRYVDAERLRRVM 401 (415)
Q Consensus 335 ~~---~----~p-~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~m 401 (415)
.. + .+ |...|.+ .|..+.+.|-+..|.++.+.+...+|. |+-.-...|+.| .++++++--+++.+..
T Consensus 86 ~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 86 TSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred ccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 10 0 22 3333433 456788999999999999999999999 888888888877 4789999888888876
Q ss_pred hh
Q 039757 402 DE 403 (415)
Q Consensus 402 ~~ 403 (415)
..
T Consensus 166 ~~ 167 (360)
T PF04910_consen 166 LA 167 (360)
T ss_pred hh
Confidence 65
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.06 E-value=4.9 Score=27.96 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=44.9
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
|.-++.+-++.+......| ++.+..+.+++|-+.+++..|.++|+.++.. +.+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVP-EPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 4556667777777777777 8888888888888888999999988877754 223445555553
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.73 E-value=7.9 Score=31.28 Aligned_cols=75 Identities=11% Similarity=-0.164 Sum_probs=59.1
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CCChhhHHHHHHHHHccCchHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~ 277 (415)
...-+.|.+.|-.+...+... ++.....|...|. ..+.+++..++....+. .+|+..+..|+..|.+.|+++.
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 334466777777777777554 7888888887777 66899999999888765 3678889999999999999998
Q ss_pred HH
Q 039757 278 AV 279 (415)
Q Consensus 278 A~ 279 (415)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.60 E-value=6.8 Score=33.56 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=65.4
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSL-AD-SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
..|.++|+.+-..+.+..|..+-..+++.... .+ ....-.++.+-+.+ ..+-. + +..+...++..++..++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~--t~~~~--l---~~~vi~~Il~~L~~~~d 217 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVS--TFSKS--L---TRNVIISILEILAESRD 217 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHh--ccccC--C---ChhHHHHHHHHHHhccc
Confidence 35566666444434456666666666666655 22 22223334444432 22222 4 55666666777777777
Q ss_pred CchHHHHHH-HHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcc
Q 039757 84 PNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128 (415)
Q Consensus 84 ~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 128 (415)
+....++++ .....+..-|...|...|......|+..-..++.++
T Consensus 218 W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 218 WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 776666664 355545556666677777777777776666666654
No 335
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.38 E-value=12 Score=29.30 Aligned_cols=43 Identities=7% Similarity=0.113 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 88 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
.+++..+.+.+++|+...+..+++.+.+.|+......++.-=.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3455555667777887888888888888887777666665433
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.09 E-value=1.8 Score=23.12 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555666666666666666666554
No 337
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.99 E-value=12 Score=32.21 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=97.8
Q ss_pred HHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHh-cC-CC
Q 039757 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYT-HSHSPLRPLFDSFTYSFLIRTCVT-LS-YP 84 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~l~~~~~~-~~-~~ 84 (415)
...+++-+..+-...+... |..++. ++..+.+|+.+|+... . ..+- . |..+-..+++.... .+ ..
T Consensus 115 li~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~---~~~~Ii--~---d~evislLL~sMv~~~~~~l 182 (292)
T PF13929_consen 115 LISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLN---PDESII--F---DEEVISLLLKSMVIDENTKL 182 (292)
T ss_pred HHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccC---ccccee--e---ChHHHHHHHHHHHhccccch
Confidence 3444444443333233222 666553 3556788999999543 2 1222 3 88888888888877 33 33
Q ss_pred chHHHHHHHHHH-cCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 85 NLGTQLHAVISK-VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 85 ~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
..--++.+.+.. .|-.++..+...++..+++.+++.+-.++++.... .|...|..+|+...+.|+..-..++.+
T Consensus 183 ~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 183 NALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 334445555543 34568888888999999999999999999988764 478899999999999999998888887
Q ss_pred hC
Q 039757 159 EM 160 (415)
Q Consensus 159 ~m 160 (415)
+=
T Consensus 263 ~G 264 (292)
T PF13929_consen 263 DG 264 (292)
T ss_pred CC
Confidence 64
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.52 E-value=12 Score=30.13 Aligned_cols=107 Identities=12% Similarity=-0.016 Sum_probs=71.6
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHH
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRR 345 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 345 (415)
.-+...|++++|..-|.+.+.. +.+...-..+++ |..-..++.+.+.++.|+.--....+..|+ .....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIl---------y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSIL---------YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHH---------HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 3467789999999999888775 233322222222 333556678889999998877666665342 22333
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
.=..+|.+...++.|++=++++.+.+|....+-...++
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 33456888889999999999999999885555444444
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.86 E-value=1.6 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 039757 230 NCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~ 250 (415)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 340
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.77 E-value=25 Score=31.28 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=121.8
Q ss_pred CCchhhHHHHHHhHhhcc-CCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 2 PSSNNVTTRIHSHLLTTN-SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
+.+.+.+.+.|.....+- ...--..+|..+..+..+.|.+++++..--.-++. ..... ...+--..|..+.+++-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~-a~~~~--ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT-ARELE--DSDFLLEAYLNLARSNEK 95 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHH
Confidence 445566666666554322 22223346777778888888887765432211110 00000 000022455666666666
Q ss_pred cCCCchHHHHHHHHHHc-CCCC---chhhHHHHHHHHHcCCChhHHHHHhcccCC-------C--chhhHHHHHHHHHhh
Q 039757 81 LSYPNLGTQLHAVISKV-GFQS---HVYVNTALVNMYVSLGFLKDSSKLFDELPE-------R--NLVTWNVMITGLVKW 147 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~ 147 (415)
.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+ | ...+|-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655544321 2112 112233455666666778888887776542 2 234678888888888
Q ss_pred CCHHHHHHHHhhCCC----CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh----hc
Q 039757 148 GELEYARSLFEEMPC----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE----KR 219 (415)
Q Consensus 148 g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~ 219 (415)
.|+++|.-+..+..+ -.+..|+. .........+.-++...|..-.|.+.-++.. ..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~----------------kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSL----------------KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhH----------------HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 888887665554421 11111110 1112223334445555555555554444443 34
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
|-.+........+.+.|-..|+.+.|+.-|++...
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 43333344445667778888888888887776544
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.65 E-value=7.6 Score=31.38 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=38.3
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCc
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 85 (415)
+.|++.|-.+-..+. .-|+...-.|...|. ..|.+++..++.+..+....+-. + |+..+.+|+..+.+.|+++
T Consensus 123 ~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~--~---n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN--F---NPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC--C---CHHHHHHHHHHHHHhcchh
Confidence 344555555554442 244444444444444 45556666666666543333322 3 5666666666666666555
Q ss_pred hH
Q 039757 86 LG 87 (415)
Q Consensus 86 ~a 87 (415)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 44
No 342
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.46 E-value=32 Score=32.12 Aligned_cols=92 Identities=10% Similarity=0.089 Sum_probs=68.5
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHH
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK--CGCIFSALKLFEDISVE-RKNLVSWTSIISGFA 270 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 270 (415)
+.++.-+.+.+...+|..++..+... +|+....|.-+|..-.. +-++..+.++|+.|... +.|+..|--.+.-=.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 34566677888899999999999887 67788888888764322 22477888888888776 677777777777666
Q ss_pred ccCchHHHHHHHHHHHh
Q 039757 271 MHGMGKAAVENFERMQK 287 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~ 287 (415)
..|..+-+-.++.+..+
T Consensus 542 ~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMK 558 (568)
T ss_pred cCCCcccccHHHHHHHH
Confidence 78888887777766554
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.20 E-value=2.3 Score=34.57 Aligned_cols=74 Identities=14% Similarity=0.024 Sum_probs=57.1
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHH
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNIL 385 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~ 385 (415)
+.-+..+.+.+++++|+...+.-.+.+| +......+++.++-.|++++|..-++..-+..+. ..++|..++++-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4456778888999999998865554446 5567788999999999999999999988888776 345677776553
No 344
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.15 E-value=2.5 Score=34.28 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=45.6
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
+.|++......++..+--+..|++.+|..++.++...|+.++|.+..+++.
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567777788888888777788999999999999999999999999999987
No 345
>PRK09687 putative lyase; Provisional
Probab=85.09 E-value=25 Score=30.56 Aligned_cols=233 Identities=9% Similarity=-0.067 Sum_probs=129.7
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCc----hHHHHHHHHHHcC
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN----LGTQLHAVISKVG 98 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~g 98 (415)
+|.......+.++...|. +.+...+..+. .+ + |...-...+.++...|+.+ .+...+..+...
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll---~~-----~---d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELC---SS-----K---NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHH---hC-----C---CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 556666666777776665 33333333333 11 3 5555566666677777643 355555554332
Q ss_pred CCCchhhHHHHHHHHHcCCCh-----hHHHHHhcc-cCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC-CCChhHHHHH
Q 039757 99 FQSHVYVNTALVNMYVSLGFL-----KDSSKLFDE-LPERNLVTWNVMITGLVKWGELEYARSLFEEMP-CRNVVSWTGI 171 (415)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~l 171 (415)
.++..+....+.+++..+.- ..+...+.. +..++..+-...+.++++.|+- +++..+-.+. .++.
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~------ 173 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNG------ 173 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCH------
Confidence 35566665666666554321 223333322 3345556666666777766664 3444443333 3332
Q ss_pred HHHHHhccCCCCccCCCchHHHHhHHHHHhhcC-ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 172 i~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
..-...+.++.+.+ +...+...+..+... + +..+....+.++++.|+. .|...+-
T Consensus 174 -------------------~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~-~~~VR~~A~~aLg~~~~~-~av~~Li 229 (280)
T PRK09687 174 -------------------DVRNWAAFALNSNKYDNPDIREAFVAMLQD---K-NEEIRIEAIIGLALRKDK-RVLSVLI 229 (280)
T ss_pred -------------------HHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---C-ChHHHHHHHHHHHccCCh-hHHHHHH
Confidence 23333333333332 123444445555533 3 777888888888888884 4555555
Q ss_pred HhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 251 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
+..+. ++ .....+.++...|.. +|...+.++.+. .||...-...+.+|.+
T Consensus 230 ~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 230 KELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 55442 33 345678888888885 688888888764 4677776666666643
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.96 E-value=3.7 Score=35.42 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.+..+-..++..-....+++.++..+-+++........ | +. +-.++++.|.+ -++++++.++..=++.|+-||
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~--~---~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYL--R---NW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhh--c---cc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 44445555555555566777777776666410000111 1 21 22233443333 356677777777777888888
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888888888888777777665554
No 347
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=84.80 E-value=32 Score=31.59 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=56.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC-
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG- 389 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 389 (415)
..|+.-|...|++.+|.+..+++.-- .-....+.+++.+..+.|+-...+.+++.....+ ..|-+.+-.+|.|-.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg---lIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG---LITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---ceeHHHhhhhhhhhhc
Confidence 45778888889999998888876543 2244578888888888888775555555544433 345555555555432
Q ss_pred -------chhhHHHHHHHHhhhc
Q 039757 390 -------RYVDAERLRRVMDERN 405 (415)
Q Consensus 390 -------~~~~A~~~~~~m~~~~ 405 (415)
+...|.+.|+...+.+
T Consensus 590 sl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 590 SLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred cCcccccCCCcHHHHHHHHHHHH
Confidence 2334555555554443
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.21 E-value=1.7 Score=25.25 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=17.9
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777777777777777776543
No 349
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.98 E-value=19 Score=28.38 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=32.3
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
...|.++.+....+-+...+ .|.....-..|.-+-.+.|++.+|...|..+...
T Consensus 143 vD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 34444555544444444443 3445556666777777777777777777776654
No 350
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=83.82 E-value=9.1 Score=28.48 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
+++.+.|.....-..|......-+. |+.. .+.+.++|+.|...+.. .+..|...+..+...|++++|.++++.
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~-ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIK-YADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHH-HHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHH-HHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4445555433222334443333332 3332 33999999999998877 456788999999999999999999975
No 351
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.33 E-value=25 Score=29.27 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=45.6
Q ss_pred hHhcCCHHHHHHHHhcCCCC--------------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSE--------------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+...|++..|+..++.-... .|.+.....++..|.. +++++|.+++.++.+.+..+......+.+
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45566666666655432211 5777777777776654 58999999999999988776655555555
Q ss_pred HHH
Q 039757 384 ILA 386 (415)
Q Consensus 384 ~~~ 386 (415)
+.-
T Consensus 281 v~K 283 (333)
T KOG0991|consen 281 VVK 283 (333)
T ss_pred HHH
Confidence 443
No 352
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.06 E-value=5.2 Score=28.12 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=35.6
Q ss_pred CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH
Q 039757 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 384 (415)
.|++.+..+.+++|.+.+++..|+++|+-++.+-......|..+++-
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE 88 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 59999999999999999999999999999988766655477766643
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.94 E-value=14 Score=26.00 Aligned_cols=53 Identities=13% Similarity=-0.042 Sum_probs=38.9
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.+...|++++|..+.+... .||...|-+|.. .+.|-.+++..-+.++...+.|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p 100 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLNRLAASGDP 100 (115)
T ss_pred HHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCH
Confidence 4677899999998888775 388888877754 3667777777777777666554
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.57 E-value=2.5 Score=28.08 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=31.1
Q ss_pred hcCChHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhcCchhhHHHH
Q 039757 353 FHGNVEMGERVTRKVLEMERGNG---GDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
...+.++|+..|+.+++..+.++ .++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888777666533 4455677777778887777665
No 355
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.53 E-value=11 Score=26.36 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=31.9
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
....- | ++....+.+++|.+.+++..|.++|+..+.+. ..+...|..+++
T Consensus 35 ~~DlV--P---~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 35 GYDLV--P---EPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred ccccC--C---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 45555 6 77777777788888888878888777765332 223445555543
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.23 E-value=51 Score=31.99 Aligned_cols=152 Identities=9% Similarity=-0.068 Sum_probs=95.7
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHH-hhcCCChHHHHHHHHHHHH----HhhcCCCCCCCCCCchhHHHHHHHH
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHF-YSLADSPKKAFLLYKQLQQ----IYTHSHSPLRPLFDSFTYSFLIRTC 78 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~l~~~~ 78 (415)
+...+.++++...+.|.+.+-...=.....+ +....|++.|+..|+.+.. .-..+ ++....-+..+|
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--------~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--------LPPAQYGLGRLY 298 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--------CCccccHHHHHH
Confidence 3677889999999998765555554445555 7788999999999999872 00133 233566677777
Q ss_pred HhcC-----CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHc-CCChhHHHHHhcccCC-CchhhHHHHHHHHH----hh
Q 039757 79 VTLS-----YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDSSKLFDELPE-RNLVTWNVMITGLV----KW 147 (415)
Q Consensus 79 ~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~----~~ 147 (415)
.+.. +.+.|..++....+.|. |+.......+..... ..+...|.++|....+ -....+-.+..+|. -.
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 7754 44569999999888884 565555434333333 2456788888887664 23333333332222 23
Q ss_pred CCHHHHHHHHhhCCCCC
Q 039757 148 GELEYARSLFEEMPCRN 164 (415)
Q Consensus 148 g~~~~a~~~~~~m~~~~ 164 (415)
.+...|..++++.-+.+
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 46677777777765444
No 357
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.85 E-value=35 Score=29.90 Aligned_cols=47 Identities=11% Similarity=0.271 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHc--CC----ChhHHHHHhcccCC
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVS--LG----FLKDSSKLFDELPE 131 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~ 131 (415)
+....+++.|++.|+.-+..+|-+....... .. ...+|..+|+.|++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 4567888999999999888777664444333 12 35677788888875
No 358
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.09 E-value=35 Score=29.38 Aligned_cols=138 Identities=8% Similarity=0.020 Sum_probs=82.5
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CCChhh
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----RKNLVS 261 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 261 (415)
...|...++.++.- +..+.++-.+-+++....+.......++..+...|++.++.+.+.++.++.... +.-...
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 45566666666551 122233332334444444334446788889999999999999999998876654 222333
Q ss_pred HHHHHH---HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 262 WTSIIS---GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 262 ~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
+-..|+ .|....-.++-++..+.|.+.|...+...-...-.+ + .+....++.+|-.++.+....
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~G----------i--~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKG----------I--FKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHH----------H--HHHHHHhhHHHHHHHHHHhcc
Confidence 333333 344455577888899999999887766442222111 1 123345678887777665544
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.83 E-value=1.1e+02 Score=34.87 Aligned_cols=107 Identities=12% Similarity=-0.001 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE- 337 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 337 (415)
..+|-...+.....|+++.|...+-...+.+ .|.. .. .....+...|+.+.|+.++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i-~~---------------E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEI-VL---------------ERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchH-HH---------------HHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3468888888888999999987776655543 3322 21 2456688899999999998876643
Q ss_pred CcC--------HHHHHHHHHH---------HhhcCC--hHHHHHHHHHHHHcccCCCccHHHHH
Q 039757 338 ITD--------VVVRRILLGA---------CSFHGN--VEMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 338 ~p~--------~~~~~~l~~~---------~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
.|+ +..-+..+.. ....++ .+..++.+..+.+..+.....+..++
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 222 2222222222 122333 35667888888887775444444444
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.71 E-value=37 Score=29.36 Aligned_cols=142 Identities=11% Similarity=-0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc------------------------
Q 039757 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV------------------------ 97 (415)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 97 (415)
.+|+++|.-+.+ ..| + +.+-..++..+-...+...|...+....-.
T Consensus 150 ~KA~ELFayLv~--hkg-k-------~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld 219 (361)
T COG3947 150 RKALELFAYLVE--HKG-K-------EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLD 219 (361)
T ss_pred hHHHHHHHHHHH--hcC-C-------cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEe
Confidence 679999999984 232 2 234456777777777777776665543211
Q ss_pred --CCCCchhhHHHHHHHHHcC-CChhHHHHHhcccCC-----------Cc-----hh----hHHHHHHHHHhhCCHHHHH
Q 039757 98 --GFQSHVYVNTALVNMYVSL-GFLKDSSKLFDELPE-----------RN-----LV----TWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 98 --g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~-----------~~-----~~----~~~~li~~~~~~g~~~~a~ 154 (415)
++..|..-|-+.+...-+- ..++++.++....+. .| .. +.+.....|..+|.+.+|.
T Consensus 220 ~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi 299 (361)
T COG3947 220 AGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAI 299 (361)
T ss_pred cCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 2334555565555444332 235666666555531 01 11 2334445667778888888
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
++-++...-| +.++..+..++..+...||--.+...++.
T Consensus 300 ~l~qr~ltld----------------------pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 300 QLHQRALTLD----------------------PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHhhcC----------------------hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 7777776544 34445555555555555554444443333
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.59 E-value=3.4 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 378 YVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 378 ~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+..++..+...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444555555555444433
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.51 E-value=36 Score=29.19 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=48.9
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHHHHHHHHHc-
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAM- 271 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~- 271 (415)
.=|++++..+++.++..-.-+.-+.. ....+.+...-|-.|.+.+.+..+.++-..-...+ .+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34566777777777643222221111 11134555556666777777777777666655542 223346666655544
Q ss_pred ----cCchHHHHHHH
Q 039757 272 ----HGMGKAAVENF 282 (415)
Q Consensus 272 ----~~~~~~A~~~~ 282 (415)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777766
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.20 E-value=18 Score=25.48 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=57.5
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
..++|..+-+.+...+-. ...+-.+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 567888888888665422 33333344567889999999999999999999999987754 467777777777766664
Q ss_pred C
Q 039757 163 R 163 (415)
Q Consensus 163 ~ 163 (415)
.
T Consensus 97 s 97 (115)
T TIGR02508 97 S 97 (115)
T ss_pred C
Confidence 3
No 364
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.20 E-value=81 Score=33.01 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-----------------------C-----CC--hhhHHHHHHHHHccCchHHHH
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVE-----------------------R-----KN--LVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~-----------------------~-----~~--~~~~~~li~~~~~~~~~~~A~ 279 (415)
-.+..+|...|...+|...|.+.... + +. ..-|-..++.+-+.+..+.+.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34445677888888888888776432 1 11 223667778888888888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChH-
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE- 358 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~- 358 (415)
++-...++. +.++..+... .++.+.......|.+-+|...+-..............++-.++..|+++
T Consensus 1004 QlA~~AIe~-l~dd~ps~a~----------~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1004 QLAVKAIEN-LPDDNPSVAL----------ISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHh-CCCcchhHHH----------HHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 776666553 3333332222 2334566667777777776665443332112234455555566655543
Q ss_pred -----------HHHH-HHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHH
Q 039757 359 -----------MGER-VTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 359 -----------~a~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
+... +++..-+..+- ....|..|-..+.+.++|.+|-.+
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 3333 33333333333 334455555556677777776544
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.96 E-value=22 Score=28.17 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=50.8
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHh-------hhhCCC-hhhHHHHHHHHHccC-
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC---GCIFSALKLFEDI-------SVERKN-LVSWTSIISGFAMHG- 273 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~-------~~~~~~-~~~~~~li~~~~~~~- 273 (415)
++.|.+.++.-... .|.|....+.-..++... ....++.+++++. ....|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 34555555554444 466777666655555444 3334454455444 333565 467777777766543
Q ss_pred ---c-------hHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 274 ---M-------GKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 274 ---~-------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+ +++|...|++... ..|+...|+.-+..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 2 4556666666555 48999999876554
No 366
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.62 E-value=27 Score=34.34 Aligned_cols=97 Identities=23% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc-cCc-----------hHHHHHHHHHHHhcCC------CCCh
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM-HGM-----------GKAAVENFERMQKVGL------KPNR 294 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~~~-----------~~~A~~~~~~m~~~g~------~p~~ 294 (415)
..-+...|++++|..+|+-..+...-....|.++.-... ... ...|..+.+.....+. .-+.
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 344556677777777777665521112233433332221 111 3344444444433211 1123
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (415)
.|+..|+.-. -+..+...|++++|++.++++.-- |
T Consensus 501 ~t~~~Ll~L~---------~ff~~~~~g~~~~AL~~i~~L~li-P 535 (613)
T PF04097_consen 501 ETFQLLLDLA---------EFFDLYHAGQYEQALDIIEKLDLI-P 535 (613)
T ss_dssp HHHHHHHHHH---------HHHHHHHTT-HHHHHHHHHHTT-S--
T ss_pred HHHHHHHHHH---------HHHHHHHcCCHHHHHHHHHhCCCC-C
Confidence 4444444332 344467889999999999988755 5
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.18 E-value=5.5 Score=33.00 Aligned_cols=87 Identities=11% Similarity=-0.116 Sum_probs=67.3
Q ss_pred HhcCCHHHHHHHHhcCCCCCcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSEITDVV-VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
....+++.|...+.+.....|+.. .|+.=+-++.+.++++.+..=..+.++..+........+...+.....+++|+..
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 334567777777766555557764 4555666777888999999999999998888888888899999999999999999
Q ss_pred HHHHhhhc
Q 039757 398 RRVMDERN 405 (415)
Q Consensus 398 ~~~m~~~~ 405 (415)
+.+..+.+
T Consensus 101 Lqra~sl~ 108 (284)
T KOG4642|consen 101 LQRAYSLL 108 (284)
T ss_pred HHHHHHHH
Confidence 88885543
No 368
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.03 E-value=1.9 Score=37.56 Aligned_cols=90 Identities=8% Similarity=-0.056 Sum_probs=75.7
Q ss_pred HhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
...|.+++|++.|...+.. .|....|.-=.+++.+.++...|++=+....+.++....-|-.-..+..-.|+|++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4578899999999888777 345556666677888999999999999999999999888888888888889999999999
Q ss_pred HHHHhhhcccc
Q 039757 398 RRVMDERNALK 408 (415)
Q Consensus 398 ~~~m~~~~~~~ 408 (415)
++...+.++..
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 99998877653
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.85 E-value=5.9 Score=25.10 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 242 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
++...++++.+...+-|..-.-.+|.+|...|++++|.++++++..
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555544333444444567777777777777777776654
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.59 E-value=20 Score=29.89 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHhhhhCCCh-hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 240 GCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
.+++.|...|.+.....|+. .-|..-+.++.+..+++.+..--++..+ +.|+.+.-.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h 81 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAH 81 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHH
Confidence 34445555444444444443 2344445555555555555444444333 344444433
No 371
>PRK10941 hypothetical protein; Provisional
Probab=78.18 E-value=13 Score=31.85 Aligned_cols=62 Identities=15% Similarity=-0.039 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+.+-.+|.+.++++.|+++.+.+....|.++.-+..-+-.|.+.|.+..|..=++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 44555667888888888888888888888888777778888888888888888777766544
No 372
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.31 E-value=23 Score=25.49 Aligned_cols=27 Identities=11% Similarity=0.402 Sum_probs=25.0
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999877
No 373
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.16 E-value=49 Score=28.79 Aligned_cols=183 Identities=11% Similarity=-0.068 Sum_probs=110.0
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc----cC
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC----GCIFSALKLFEDISVERKNLVSWTSIISGFAM----HG 273 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 273 (415)
..+++..+...+......+ +......+...|... .+..+|.++|..+-+. ........|...|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-GLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-ccHHHHHhHHHHHhcCCCccc
Confidence 4556666667776666643 334444455555443 4688899999966553 333444456666655 44
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhc-------CCHHHHHHHHhcCCCCCcCHHHHHH
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA-------GRLEQAEKIALGIPSEITDVVVRRI 346 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~~~~~~p~~~~~~~ 346 (415)
+..+|..+|++.-+.|..+....... +...|..- -+...|...+...... -+......
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~--------------l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~~~~a~~~ 192 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYR--------------LGLAYLSGLQALAVAYDDKKALYLYRKAAEL-GNPDAQLL 192 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHH--------------HHHHHHcChhhhcccHHHHhHHHHHHHHHHh-cCHHHHHH
Confidence 88999999999999887665111111 22222221 1234677777766655 24444444
Q ss_pred HHHHHh----hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC---------------chhhHHHHHHHHhhhccc
Q 039757 347 LLGACS----FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG---------------RYVDAERLRRVMDERNAL 407 (415)
Q Consensus 347 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~~ 407 (415)
+...|. -..+.++|...|.+..+.+. ......+. .+...| +...|...+......+..
T Consensus 193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 193 LGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 444443 24588999999999999887 44444444 555444 667777777776665543
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.02 E-value=5.3 Score=23.21 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHccCchHHHHHHHHHHHh
Q 039757 265 IISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
|..+|...|+.+.|..++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 375
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.67 E-value=22 Score=26.43 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
.+..+|+.|..+|+-..-+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777777666677777777777777777777777764
No 376
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.38 E-value=37 Score=27.05 Aligned_cols=91 Identities=14% Similarity=0.018 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhhCCCh----hh-----HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 242 IFSALKLFEDISVERKNL----VS-----WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 242 ~~~A~~~~~~~~~~~~~~----~~-----~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
++.|..+|+.+.+.-+-. .. --..+..|.+.|.+++|.+++++... .|+......-+....+..+.|.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccccc
Confidence 568999999988772221 11 22345678999999999999999987 5777777766666655555555
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCC
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
.++..+.-..-.+...++++...
T Consensus 162 ~~lqnFSy~~~~~ki~~~ve~~~ 184 (200)
T cd00280 162 PVLQNFSYSHFMQKMKSYVELVL 184 (200)
T ss_pred HHHHhccHHHHHHHHHHHHHHHh
Confidence 55555444444444444444433
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.94 E-value=54 Score=28.24 Aligned_cols=127 Identities=10% Similarity=0.025 Sum_probs=82.4
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CC-ChhhHH
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFD------IRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK-NLVSWT 263 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~ 263 (415)
+.+...+.+++++|+..|..+...|....+ ..+...+...|...|+...-.++.....+. +| .+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445567788999999999999998865521 234556788899999877766665543332 12 344456
Q ss_pred HHHHHHHcc-CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 264 SIISGFAMH-GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 264 ~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
+|+..+-.. ..++..+.+.....+.-.+-.......-+.+ .++..+.+.|++.+|+.+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~---------Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELEC---------KLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHH
Confidence 666665543 4566667777766654333344443333333 3788889999999988764
No 378
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.74 E-value=91 Score=30.74 Aligned_cols=121 Identities=11% Similarity=0.074 Sum_probs=68.7
Q ss_pred hhhHHHHHHhHhhccC---CcchHHHHHHH-HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHH-
Q 039757 5 NNVTTRIHSHLLTTNS---LLHHTLLFNTL-LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV- 79 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~- 79 (415)
+..|++..+..+..-. ..+-...|.-+ +..+...+++..|.+.++.+.+.....-. | -...+..++.+..
T Consensus 115 ~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d--~---~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 115 PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD--P---AVFVLASLSEALLH 189 (608)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC--H---HHHHHHHHHHHHHH
Confidence 3445666655443221 22333344444 44444458999999999988853221122 3 5555566666554
Q ss_pred -hcCCCchHHHHHHHHHHcCC---------CCchhhHHHHHHHHH--cCCChhHHHHHhcccC
Q 039757 80 -TLSYPNLGTQLHAVISKVGF---------QSHVYVNTALVNMYV--SLGFLKDSSKLFDELP 130 (415)
Q Consensus 80 -~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 130 (415)
+.+.++.+.+.++.+..... .|...+|..+++.++ ..|+++.+...++++.
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556777777777643222 345667777776654 5677667666655553
No 379
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.21 E-value=37 Score=25.96 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhh-------CCChhhHHHHHHHHHccCc-hHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVE-------RKNLVSWTSIISGFAMHGM-GKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.+.++.-....++..-...+++.+... ..+...|.+++.+..+..- --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455555556666777777777766433 2456779999999977765 45678899999998899999999999
Q ss_pred HHHHccC
Q 039757 301 LNACSHG 307 (415)
Q Consensus 301 l~~~~~~ 307 (415)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8887543
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.58 E-value=22 Score=26.68 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=34.1
Q ss_pred cCHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 339 TDVVVRRILLGACSFHGN---VEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 339 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
++..+--.+..++.+..+ ..+.+.+++.+.+...+ .......|.-++.+.|+|+++.++++.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444445555555443 34455566666552222 333444555566666666666666665544
No 381
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.13 E-value=31 Score=24.65 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=56.0
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
...++|..+.+.+...+- ....+-.+.+..+...|++++|+..=.....||...|-+|-. .+.|.-+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 466899999999988763 344444455677889999999965555555699999877654 57899999999999776
Q ss_pred CCC
Q 039757 162 CRN 164 (415)
Q Consensus 162 ~~~ 164 (415)
..+
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 543
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.54 E-value=1.1e+02 Score=30.77 Aligned_cols=169 Identities=12% Similarity=0.008 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHH----HHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIR----TCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
.....-|..+.+...++-|+.+-+.-. . +..+...++. .+.+.|++++|...|-+-+.. +.|
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~----------~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~ 400 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH----------L---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP 400 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC----------C---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh
Confidence 345677888888999999998865543 2 4444444444 456779999998888765443 233
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh-hHHHHHHHHHHh
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV-VSWTGILDGYTR 177 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~li~~~~~ 177 (415)
.. +|.-|....++..--.+++.+.+ .+...-..|+.+|.+.++.++-.++.+...+... .-....+..+.+
T Consensus 401 s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 401 SE-----VIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRK 475 (933)
T ss_pred HH-----HHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHH
Confidence 32 45555566666666677777765 3445567899999999999999888887762211 124455566666
Q ss_pred ccCCCCcc-----CCCchHHHHhHHHHHhhcCChhHHHHHHhhh
Q 039757 178 MNRSNGAS-----TEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216 (415)
Q Consensus 178 ~~~~~~a~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (415)
.+-.++|. ....+.....++ -..+++++|.+.++.+
T Consensus 476 snyl~~a~~LA~k~~~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKKHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhccCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66555554 122333333333 3567778887776654
No 383
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=72.39 E-value=28 Score=28.78 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHcCCChhHHHHHhcccCC----CchhhHHHH----HHHHHhhCCHHHHHHHHhhCC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE----RNLVTWNVM----ITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~ 161 (415)
|......|++++|......+.. -|...+--| +--..+.|..++|+++++.=.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 3444556666666665555532 122111111 112345666666766666544
No 384
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.31 E-value=7.9 Score=19.95 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 355 GNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
|+.+.|..+|+++....+.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677778888887777666666665554
No 385
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.16 E-value=49 Score=31.75 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 185 (415)
.+.++..+-+.|-.++|+.+-- +||. -.....+.|+++.|.++..+.. +..-|..|.++..+.+++..|.
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~---D~d~-----rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~ 686 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELST---DPDQ-----RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLAS 686 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCC---Chhh-----hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHH
Confidence 4445555555665555554321 1111 1122334555555555544432 2222333333333333322222
Q ss_pred -CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 186 -TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 186 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
.-....-+..|+-.+...|+-+....+-....+.|.. |....+|...|+++++.+++.+
T Consensus 687 EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 687 ECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhccc-------chHHHHHHHcCCHHHHHHHHHh
Confidence 1111122344444444455544444444444443321 2222345555666666665544
No 386
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.01 E-value=7.3 Score=23.73 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=25.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCcc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (415)
.+.-++.+.|++++|.+..+.+++..|.+...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999987643
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.86 E-value=18 Score=25.22 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=33.6
Q ss_pred hhcCChHHHHHHHHHHHHcccC----C-----CccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 352 SFHGNVEMGERVTRKVLEMERG----N-----GGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.+.||+..|.+.+.+..+.... . ......+.......|++++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667777776666666554433 1 122334556677788888888888877653
No 388
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=71.68 E-value=36 Score=25.30 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCCCcCHH---HHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHH
Q 039757 325 EQAEKIALGIPSEITDVV---VRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 399 (415)
+++.+.|.....-..|+. .|-..+..+ ++..++|..|.+++.. -+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555544332233444 444444432 4468899999998877 45678889999999999999999986
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.30 E-value=24 Score=23.63 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=33.6
Q ss_pred ccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
..++.++|+..|+...+.-..|.. -|. + ++.|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~-rf~-~----------lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRED-RFR-V----------LGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHH-HHH-H----------HHHHHHHHHHHHHHHHHHHH
Confidence 667788999999888776444332 222 2 34488889999999888765
No 390
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.80 E-value=13 Score=31.13 Aligned_cols=88 Identities=14% Similarity=-0.056 Sum_probs=65.2
Q ss_pred hHhcCCHHHHHHHHhcC-------CCC-CcCHHHH-----------HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccH
Q 039757 318 LGRAGRLEQAEKIALGI-------PSE-ITDVVVR-----------RILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~-------~~~-~p~~~~~-----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (415)
+.+.|++.+|..-|++. .-+ .|...-| -.+-+++...|++-++++...+++...+.+..+|
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~ 267 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAY 267 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 56677777776665432 111 3543333 3344566788999999999999999999999999
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 379 VLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 379 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.-+.+....=+.++|..=|....+..
T Consensus 268 frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 268 FRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 999999988888888888887766544
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.75 E-value=13 Score=25.64 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchh
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 392 (415)
|....-.+...+...|++++|++.+-.+.+.++. +...-..|+..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5567777888899999999999999999888766 4566677888877777644
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.17 E-value=1.4e+02 Score=30.61 Aligned_cols=173 Identities=17% Similarity=0.062 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CC---hhhHHHHHHHHHccCch--HHHHHHHHHHHhcCCCCChhhHHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVER--KN---LVSWTSIISGFAMHGMG--KAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
.-|..|+..|...|+.++|.++|.+..... .| ...+..++.-+.+.+.. +-+++.-+......-.-....+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 347788999999999999999999887742 11 11233345544444433 444444333333211111111111
Q ss_pred HHH-HHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcC--------ChHHHHHH-----
Q 039757 300 VLN-ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHG--------NVEMGERV----- 363 (415)
Q Consensus 300 ll~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~--------~~~~a~~~----- 363 (415)
... .+.. .-...+..|......+-+...++.+... .++....+.++..|++.= +.+++.+.
T Consensus 585 ~~~~~~~s---is~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rek 661 (877)
T KOG2063|consen 585 EDKQEAES---ISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREK 661 (877)
T ss_pred cChhhhcc---CCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHH
Confidence 000 0000 0011333466667777788888777655 456666777777665421 12233332
Q ss_pred HHHHHHcc----c-------CCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 364 TRKVLEME----R-------GNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 364 ~~~~~~~~----~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+..+++.. | +....|......+.+.|+.++|..++-...
T Consensus 662 l~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 662 LLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred HHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 22222211 1 122456666667779999999998875544
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.54 E-value=9 Score=27.58 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.9
Q ss_pred CccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 375 GGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 375 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..-|..|+..|...|..++|.+++.+..+
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45678888888888888888888888877
No 394
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.23 E-value=44 Score=29.56 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=63.6
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchH
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 276 (415)
.-|.+.|.+++|...|...... .|.++.++..-..+|.+..++..|+.--+...... .-+..|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3567788888888888887776 67788888888889999888887776665554421 11223444444444455566
Q ss_pred HHHHHHHHHHhcCCCCChhhHH
Q 039757 277 AAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
+|.+-++.... +.|+..-+.
T Consensus 183 EAKkD~E~vL~--LEP~~~ELk 202 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPKNIELK 202 (536)
T ss_pred HHHHhHHHHHh--hCcccHHHH
Confidence 66666665555 467654433
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.17 E-value=21 Score=21.20 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
....+.|-..++..++++|.+.|+.-+...|..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 334567778889999999999999988888877654
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.81 E-value=36 Score=23.27 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 87 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 87 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. ..+..|...+.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5667777777774 334334333332235578888888888888 77777888888887777655544
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.07 E-value=26 Score=24.32 Aligned_cols=57 Identities=7% Similarity=-0.064 Sum_probs=35.5
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-----chhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 039757 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD-----SFTYSFLIRTCVTLSYPNLGTQLHAVISK 96 (415)
Q Consensus 35 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (415)
..+.|++..|.+.+.+..+....... + . ......+.......|++++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~--~---~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNN--S---SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhccc--c---hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35689999998777776643222222 2 2 12333345556677888888888887755
No 398
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.93 E-value=4.5 Score=37.04 Aligned_cols=88 Identities=9% Similarity=-0.083 Sum_probs=70.8
Q ss_pred HHhHhcCCHHHHHHHHhcCCCCCcCHHHHHH-HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhH
Q 039757 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRI-LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 394 (415)
..+...+.++.|..++.++.+..|+...|-. =..++.+.+++..|+.=+.++++..|.....|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3356778899999999888877675544332 237788999999999999999999988888888888999999999999
Q ss_pred HHHHHHHhh
Q 039757 395 ERLRRVMDE 403 (415)
Q Consensus 395 ~~~~~~m~~ 403 (415)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 988876543
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.78 E-value=45 Score=23.91 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=55.1
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
....++|..+.+.+...+. ....+--+-+..+.+.|++++| +........||...|.+|- -.+.|-.+++...+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 3456889999999988753 1233333345578899999999 4444443347877776654 46788889999999
Q ss_pred HHHHhcCCCCChhhH
Q 039757 283 ERMQKVGLKPNRVTF 297 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~ 297 (415)
.++...| .|....|
T Consensus 93 ~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 93 TRLASSG-SPELQAF 106 (116)
T ss_dssp HHHCT-S-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 8887654 3444333
No 400
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.55 E-value=84 Score=26.96 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=44.5
Q ss_pred CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHH
Q 039757 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQL 211 (415)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~ 211 (415)
-|+.....+...|.+.|++.+|...|-.-..++...+..++..+...|...++ +. .....+-.|...++...|..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----dl-fi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----DL-FIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----HH-HHHHHHHHHHHTTBHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----hH-HHHHHHHHHHHhcCHHHHHH
Confidence 46677888888888888888888887766555555554455555555543332 11 22222223444555666665
Q ss_pred HHhhhhh
Q 039757 212 IHGYGEK 218 (415)
Q Consensus 212 ~~~~~~~ 218 (415)
.+....+
T Consensus 163 ~~~~f~~ 169 (260)
T PF04190_consen 163 LFDTFTS 169 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 401
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=65.83 E-value=89 Score=27.77 Aligned_cols=127 Identities=11% Similarity=0.074 Sum_probs=73.2
Q ss_pred HccCchHHHHHHHHHHHhc--CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC------CcCH
Q 039757 270 AMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE------ITDV 341 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~~ 341 (415)
...++.+++..++..+... |...+....+.-=.+ ...+.+.|.+.|+.++-..+.....+- ....
T Consensus 15 ~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~-------Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 15 VSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQS-------ILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred cccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHH-------HHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445556666666666552 444444443322121 122566677888877766665443321 1233
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHHHHHHcccCCCc------cHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 342 VVRRILLGACSFH-GNVEMGERVTRKVLEMERGNGG------DYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 342 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
.....++..+... +..+.-+.++..+.+.....-. .-..++..|...++|.+|..+...+.+
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLR 156 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556666666543 3355666666666665544222 234688999999999999987766543
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.20 E-value=52 Score=30.17 Aligned_cols=59 Identities=17% Similarity=0.042 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcc-------cC-CCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEME-------RG-NGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
.-.|++.++-.||+..|+++++.+--.. +. ...+|..++-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777788888887776653211 11 45677777888888888888888776653
No 403
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.00 E-value=1.1e+02 Score=27.90 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CCChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVE----RKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
...+.-+.+.|..+|+++.|.+.|-+...- +-.+..|-.+|..-.-.|+|.....+..+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456677888999999999999999986543 123345667777777788888888888777664
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.99 E-value=1.8e+02 Score=29.92 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC--c
Q 039757 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP--N 85 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~--~ 85 (415)
.+.+-.++.+.+. |..|+..|...|+.++|+++|..........-. . -...+-.++..+.+.+.. +
T Consensus 494 vee~e~~L~k~~~-------y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~--~---~~~~~e~ii~YL~~l~~~~~~ 561 (877)
T KOG2063|consen 494 VEEIETVLKKSKK-------YRELIELYATKGMHEKALQLLRDLVDEDSDTDS--F---QLDGLEKIIEYLKKLGAENLD 561 (877)
T ss_pred hHHHHHHHHhccc-------HHHHHHHHHhccchHHHHHHHHHHhcccccccc--c---hhhhHHHHHHHHHHhcccchh
Confidence 3444455566554 889999999999999999999998621000001 0 122333455555555544 4
Q ss_pred hHHHHHHHHHHc
Q 039757 86 LGTQLHAVISKV 97 (415)
Q Consensus 86 ~a~~~~~~~~~~ 97 (415)
.+.++-++..+.
T Consensus 562 Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 562 LILEYADWVLNK 573 (877)
T ss_pred HHHHHhhhhhcc
Confidence 555555554443
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.91 E-value=73 Score=27.44 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=54.4
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CCccHHHHHHHH-----H
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG-NGGDYVLMYNIL-----A 386 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~-----~ 386 (415)
|.++.+.++|.++....-..-.. .--..+...-|-.|.+.|++..+.++-..-+...-. ...-|..++..| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 67788999999987754322222 012234444455678899988888887777664433 334477666655 4
Q ss_pred hcCchhhHHHHH
Q 039757 387 GVGRYVDAERLR 398 (415)
Q Consensus 387 ~~g~~~~A~~~~ 398 (415)
-.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 469999998876
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.90 E-value=15 Score=31.73 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=32.8
Q ss_pred CcchHHH-HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCC
Q 039757 21 LLHHTLL-FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60 (415)
Q Consensus 21 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 60 (415)
+.||+.+ ||.-|+.-.+.||+++|+.++++.. +.|..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe---~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAE---RLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCc
Confidence 5577776 7899999999999999999999999 88877
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.16 E-value=77 Score=25.37 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Q 039757 275 GKAAVENFERMQKVGLKP--NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 352 (415)
.+.|+.+|+.+.+.--.| -......++.- ..+-.|.+.|.+++|.+++++.-.. |+......-+....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~---------~aV~VCm~~g~Fk~A~eiLkr~~~d-~~~~~~r~kL~~II 154 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKE---------QAVAVCMENGEFKKAEEVLKRLFSD-PESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH---------HHHHHHHhcCchHHHHHHHHHHhcC-CCchhHHHHHHHHH
Confidence 567888888887652222 11222223322 2566788999999999999888775 66555555555555
Q ss_pred hcCC
Q 039757 353 FHGN 356 (415)
Q Consensus 353 ~~~~ 356 (415)
+.+|
T Consensus 155 ~~Kd 158 (200)
T cd00280 155 REKD 158 (200)
T ss_pred Hccc
Confidence 5444
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.79 E-value=49 Score=28.10 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-------CCChhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVE-------RKNLVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
..+.-.+..-|.+.|++++|.++|+.+... .+...+...+..++...|+.+....+-=+|
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344456778899999999999999998544 123345666777888888888877765554
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.33 E-value=15 Score=30.30 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=31.5
Q ss_pred HhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC
Q 039757 319 GRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 375 (415)
.+.++.+.|.+++.+.....| ....|-.+...-.+.|+++.|.+.+++..+.+|++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445555555555555544422 344555555555566666666666666666655543
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.33 E-value=36 Score=28.90 Aligned_cols=78 Identities=8% Similarity=-0.105 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------CCccHHHHHHHHHhcCchhhHHHHH
Q 039757 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG------NGGDYVLMYNILAGVGRYVDAERLR 398 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 398 (415)
..|...|......+-....-..+..-|...|++++|.++|+.+...... ...+...+..++.+.|+.++...+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555554443122334445677789999999999999999654332 2345666777788889888887776
Q ss_pred HHHh
Q 039757 399 RVMD 402 (415)
Q Consensus 399 ~~m~ 402 (415)
=++.
T Consensus 242 leLl 245 (247)
T PF11817_consen 242 LELL 245 (247)
T ss_pred HHHh
Confidence 5543
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.13 E-value=40 Score=27.27 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=21.3
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHhcccCC
Q 039757 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPE 131 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 131 (415)
.|+..+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666677777777666666543
No 412
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.99 E-value=16 Score=31.61 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=34.4
Q ss_pred CChh-hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 257 KNLV-SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 257 ~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
|+.. -|+.-|....+.||+++|++++++.++.|+.--..+|-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3443 377899999999999999999999999988776666554
No 413
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.80 E-value=1e+02 Score=26.38 Aligned_cols=252 Identities=14% Similarity=0.094 Sum_probs=136.8
Q ss_pred hcCCCchHHHHHHHHHHcCCCC---chhhHHHHHHHHHcCCChhHHHHHhcccCC---------CchhhHHHHHHHHHhh
Q 039757 80 TLSYPNLGTQLHAVISKVGFQS---HVYVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLVTWNVMITGLVKW 147 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~ 147 (415)
+...+++|+.-|++..+..-.. .-...-.+|..+.+.|++++....+.++.. -+..+.|+++.....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999999887643121 123445678889999999999998888763 2344566666655555
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC----
Q 039757 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA---- 223 (415)
Q Consensus 148 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---- 223 (415)
.+.+--.++++.- ++++-.+.+ ...-..|-.-+...+...+.+.+...+++++.+.-...
T Consensus 119 ~~m~LLQ~FYeTT-----------L~ALkdAKN-----eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 119 KNMDLLQEFYETT-----------LDALKDAKN-----ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred hhhHHHHHHHHHH-----------HHHHHhhhc-----ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 5444433333322 111111100 11122223344555566666666666666665431100
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CChhhHHHHH----HHHHccCchHHHHHHH-HHHHhc-
Q 039757 224 ------FDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWTSII----SGFAMHGMGKAAVENF-ERMQKV- 288 (415)
Q Consensus 224 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li----~~~~~~~~~~~A~~~~-~~m~~~- 288 (415)
.-..+|..=|.+|....+-.+...+|++....+ |.+.....+- ..+.+.|++++|..-| +.....
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 024577777888988888888888888765542 4433333222 1245678888887544 333322
Q ss_pred -CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC----CcCHHHHHHHHHHHhhcCChHHHHHH
Q 039757 289 -GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE----ITDVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 289 -g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
.-.|-..|+.. |-.|..++.+.|- .=|+.-..+ .|.....+.|+.+|... +..+-.++
T Consensus 263 EsGspRRttCLK-----------YLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 263 ESGSPRRTTCLK-----------YLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred ccCCcchhHHHH-----------HHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 12444444433 3335555555541 111111111 45666777788877543 44444433
Q ss_pred H
Q 039757 364 T 364 (415)
Q Consensus 364 ~ 364 (415)
+
T Consensus 326 l 326 (440)
T KOG1464|consen 326 L 326 (440)
T ss_pred H
Confidence 3
No 414
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=61.69 E-value=93 Score=25.85 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=8.5
Q ss_pred HhHhcCCHHHHHHHHhcC
Q 039757 317 MLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~ 334 (415)
.....|+.++|++....+
T Consensus 73 ~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 73 RAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHhccHHHHHHHHHHh
Confidence 344445555555444443
No 415
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.51 E-value=68 Score=29.59 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=49.2
Q ss_pred HHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 108 ALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
.|+.-|...|++.+|.+.++++.-| ....+-+++.+.-+.|+-...+.+++..-..+..|-+.|-.+|.+..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhh
Confidence 4566666777777777777766543 45567777777777777777777777766666777777777766543
No 416
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.47 E-value=2.1e+02 Score=29.89 Aligned_cols=251 Identities=12% Similarity=0.028 Sum_probs=135.2
Q ss_pred HHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCC-------CccCCCchHHH
Q 039757 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN-------GASTEPSEITI 193 (415)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~-------~a~~~~~~~~~ 193 (415)
....+.+.+.++|+.+-...+..+.+.+..+....+...+..++...-...+.++.+.+... .++..++..+-
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 33455566667888888888888888877554444555555666655555555555543211 11134555665
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccC
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 273 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~ 273 (415)
...+.++...+..+ ...+.. ..+. + +..+-...+.++.+.+..+. +...+.. ++...-...+.++...+
T Consensus 702 ~~A~~aL~~~~~~~-~~~l~~-~L~D---~-d~~VR~~Av~aL~~~~~~~~---l~~~l~D--~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 702 AAALDVLRALRAGD-AALFAA-ALGD---P-DHRVRIEAVRALVSVDDVES---VAGAATD--ENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHHhhccCC-HHHHHH-HhcC---C-CHHHHHHHHHHHhcccCcHH---HHHHhcC--CCHHHHHHHHHHHHHhc
Confidence 66666665543222 222223 3322 2 77777777888777665432 2222222 66666667777777766
Q ss_pred chHH-HHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Q 039757 274 MGKA-AVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352 (415)
Q Consensus 274 ~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 352 (415)
..+. +...+..+.+ .+|...-.. .+.++.+.|..+.+...+...... ++...-...+.++.
T Consensus 771 ~~~~~~~~~L~~ll~---D~d~~VR~a--------------A~~aLg~~g~~~~~~~~l~~aL~d-~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 771 AGGAPAGDAVRALTG---DPDPLVRAA--------------ALAALAELGCPPDDVAAATAALRA-SAWQVRQGAARALA 832 (897)
T ss_pred cccchhHHHHHHHhc---CCCHHHHHH--------------HHHHHHhcCCcchhHHHHHHHhcC-CChHHHHHHHHHHH
Confidence 5442 3445555554 245444444 444466666655443334333333 46556666677777
Q ss_pred hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..+. +++...+..+.+ -++...-...+.++.+.+.-..+...+....+
T Consensus 833 ~l~~-~~a~~~L~~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 833 GAAA-DVAVPALVEALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hccc-cchHHHHHHHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6665 344455554443 22344555555666554323345555544443
No 417
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.22 E-value=1.5e+02 Score=27.98 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=70.5
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHH-------cCCCCch----
Q 039757 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK-------VGFQSHV---- 103 (415)
Q Consensus 35 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~g~~~~~---- 103 (415)
+--.|++.+|.+++.........|..-+|...+-..||.+...+.+.|.+..+..+|....+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44479999999988765411122221012111222347777777788888888777777664 4544431
Q ss_pred -------hhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhh
Q 039757 104 -------YVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKW 147 (415)
Q Consensus 104 -------~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 147 (415)
.+||. --.|...|++-.|.+.|....+ .++..|--|..+|+..
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 23442 2345678899888888887764 7888999999888754
No 418
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.55 E-value=42 Score=26.73 Aligned_cols=76 Identities=18% Similarity=0.103 Sum_probs=48.1
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHhhhhCCChhhHHHHHHHHHccCc
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG----C-------IFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 274 (415)
+++|..-|++.+.. .|....++..+..+|...+ + +++|.+.|++.....|+...|+.-+....
T Consensus 51 iedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----
Confidence 45566666666665 6767788888888776654 3 44555666666666799999998888764
Q ss_pred hHHHHHHHHHHHhcC
Q 039757 275 GKAAVENFERMQKVG 289 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g 289 (415)
+|-++..++.+.+
T Consensus 125 --kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 --KAPELHMEIHKQG 137 (186)
T ss_dssp --THHHHHHHHHHSS
T ss_pred --hhHHHHHHHHHHH
Confidence 3556666665554
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.04 E-value=69 Score=23.80 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=35.6
Q ss_pred hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
-+..+-+.....-.+.| ++.+...-++++-+.+++..|.++|+.++..
T Consensus 66 wEvrkglN~l~~yDlVP-~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVP-SPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666666666 8888888888888888888888888887765
No 420
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=59.36 E-value=2.3e+02 Score=29.63 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
++.+....+.++...|..+.+...+..+... ++...-...+.++...+. +++...+-.+.+ .|+...=...+.++
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL 862 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRA-SAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLAL 862 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcC-CChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 4555556666666666544433333222221 444444444555555443 233344444333 24444444444444
Q ss_pred cc
Q 039757 305 SH 306 (415)
Q Consensus 305 ~~ 306 (415)
..
T Consensus 863 ~~ 864 (897)
T PRK13800 863 TR 864 (897)
T ss_pred hc
Confidence 44
No 421
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.65 E-value=96 Score=26.23 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.+.++..++...|++-++++--.++.... .|+..|..-..+.+..-+.++|..-|.....
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34444555555555555555555555442 2445555555555555556666655555554
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.71 E-value=1.5e+02 Score=27.09 Aligned_cols=58 Identities=10% Similarity=-0.101 Sum_probs=30.0
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
.+.+.+++..|.++|+++... +.++.. |..+-..| ..-.+...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~-~~~~~~l~---------~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREE-YQRYKDLC---------EGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhh-HHHHHHHH---------HHHHHHHccCHHHHHHHHHHHHH
Confidence 344566777777777777665 444443 33211111 11223445666677776665544
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.48 E-value=61 Score=22.37 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=26.5
Q ss_pred HHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.-++...+.+|.+...-..+...+...|++++|.+.+-++.+.+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34455555666666666677777777777777777666665543
No 424
>PF15469 Sec5: Exocyst complex component Sec5
Probab=57.45 E-value=43 Score=26.78 Aligned_cols=25 Identities=20% Similarity=-0.024 Sum_probs=12.3
Q ss_pred chhhHHHHHHHHhhhccccCCCCCC
Q 039757 390 RYVDAERLRRVMDERNALKFPGRSL 414 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~~~~~~~~ 414 (415)
..++..++++.+.+.+...+|.|-|
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 3444444445555555555555544
No 425
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.99 E-value=1.2e+02 Score=29.35 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhhCCChhhHHHH--HHHH-HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhH
Q 039757 243 FSALKLFEDISVERKNLVSWTSI--ISGF-AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG 319 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~~~~~~~~l--i~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~ 319 (415)
+-+-.++..|.. |+...|-+| ...| ...|+...|.+.+...... .|...... ++ .|...+.
T Consensus 590 e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~--~p~~~~v~-~v-----------~la~~~~ 653 (886)
T KOG4507|consen 590 EIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNL--APLQQDVP-LV-----------NLANLLI 653 (886)
T ss_pred HHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhcc--Chhhhccc-HH-----------HHHHHHH
Confidence 334455555554 443333222 2223 3357777777777665443 33222111 11 1444455
Q ss_pred hcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 320 RAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
+.|....|..++...... .-.+.++-.+.+++....++++|++.|+.+.+..+.++..-+.|...-
T Consensus 654 ~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 654 HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 556666666665433222 234556777788888888899999999998888888766655554433
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=56.93 E-value=29 Score=25.74 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=24.6
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
...+|..|..+|+-..-+..|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666665554445555555556666666666666654
No 427
>PRK10941 hypothetical protein; Provisional
Probab=56.21 E-value=1.3e+02 Score=25.91 Aligned_cols=75 Identities=9% Similarity=-0.049 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC-CCCchhhH
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVYVN 106 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~ 106 (415)
.+.+-.+|.+.++++.|+.+.+.+. .-.+. ++.-+.--.-.+.+.|.+..|..=++..++.. -.|+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll---~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALL---QFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3444456666777777777777776 44444 45555555555667777777776666665432 22344444
Q ss_pred HHHHH
Q 039757 107 TALVN 111 (415)
Q Consensus 107 ~~li~ 111 (415)
...+.
T Consensus 255 k~ql~ 259 (269)
T PRK10941 255 RAQIH 259 (269)
T ss_pred HHHHH
Confidence 33333
No 428
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.97 E-value=1.5e+02 Score=26.41 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=35.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHH--HHHHHHhcCCCchHHHHHHHHHH-----cCCCCchh
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSF--LIRTCVTLSYPNLGTQLHAVISK-----VGFQSHVY 104 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~ 104 (415)
+...-+.+|.++|++.++++.+....--. | +...|.. ..+.+...|+.+.+.+.+++..+ .|++|+++
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e--~---~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKE--P---DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhcc--c---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33444445666666666666642222222 3 4444432 33444455666666666666655 45555443
No 429
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.82 E-value=41 Score=19.90 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=28.2
Q ss_pred HHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 77 TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
...+.|-..++..+++.|.+.|+-.+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34577888899999999999998888888876664
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.19 E-value=51 Score=20.81 Aligned_cols=45 Identities=13% Similarity=-0.049 Sum_probs=33.2
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
.+.+..+...+.. ..+|-.-.-.+|.+|...|++++|.+.++.+.
T Consensus 6 ~~~~~~~~~~lR~---~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRA---QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555544 33666777788999999999999999999887
No 431
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=55.15 E-value=1.1e+02 Score=24.70 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=52.4
Q ss_pred hHhcCCHHHHHHHHhcCCCC----CcCHHHHHHHHH-HHhhcC--ChHHHHHHHHHHHHcccCCC-------ccHH-HHH
Q 039757 318 LGRAGRLEQAEKIALGIPSE----ITDVVVRRILLG-ACSFHG--NVEMGERVTRKVLEMERGNG-------GDYV-LMY 382 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~-~~~~~~--~~~~a~~~~~~~~~~~~~~~-------~~~~-~l~ 382 (415)
....|++++|.+-++++.+. ..-...|..+.. +++..+ .+-+|.-++.-+.....|++ ..|. -++
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~ 118 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLA 118 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHH
Confidence 45678899998888776554 112334444444 455444 46677777777776665522 1221 111
Q ss_pred H----------HHHhcCchhhHHHHHHHHhh
Q 039757 383 N----------ILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 383 ~----------~~~~~g~~~~A~~~~~~m~~ 403 (415)
+ -..+.|+++.|.+.++-|.+
T Consensus 119 D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 119 DAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 14567999999999988875
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.82 E-value=22 Score=26.56 Aligned_cols=32 Identities=9% Similarity=-0.051 Sum_probs=24.3
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 113 (415)
..|.-..|-.+|..|++.|-+||. |+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 445667789999999999988875 77776543
No 433
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.78 E-value=2.8e+02 Score=29.15 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC--chHHHHHHHHHHHhc
Q 039757 240 GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG--MGKAAVENFERMQKV 288 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~ 288 (415)
+++....+.+.+...... ...-...++.+|.+.+ ++++|+....++++.
T Consensus 792 ~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344444444444333113 3344567778888887 888888888888765
No 434
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=54.68 E-value=53 Score=20.80 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=32.0
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
+.+.|++-+|.++++.+-..--.|....+..+|... ......+.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A---------~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLA---------VALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHH---------HHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHH---------HHHHHHHhCCHHHHHHhC
Confidence 455778888888888876543334555555555543 333346677777777654
No 435
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.27 E-value=2.6e+02 Score=28.61 Aligned_cols=221 Identities=14% Similarity=0.066 Sum_probs=112.9
Q ss_pred HcCCChhHHHHHhcccCC----Cch-------hhHHHHHHH-HHhhCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhccC
Q 039757 114 VSLGFLKDSSKLFDELPE----RNL-------VTWNVMITG-LVKWGELEYARSLFEEMPCRN-VVSWTGILDGYTRMNR 180 (415)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~----~~~-------~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~ 180 (415)
....++++|..++.++.. |+. ..|+.+-.. ....|++++|.++-+.....- ..+
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~------------- 492 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA------------- 492 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc-------------
Confidence 345678888877776542 221 134443322 234678888888776654210 000
Q ss_pred CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHH---HH--HHHHHhcCC--HHHHHHHHHHhh
Q 039757 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN---CL--IDTYAKCGC--IFSALKLFEDIS 253 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~--~~~A~~~~~~~~ 253 (415)
..+....+..+..+..-.|+++.|..+.....+..-.- +...+. .+ ...+...|+ +.+....|....
T Consensus 493 -----~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~ 566 (894)
T COG2909 493 -----YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIR 566 (894)
T ss_pred -----chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 23344455666677777888888888877666542111 333332 22 233556673 333344444443
Q ss_pred hh----CC----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcC--CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCC
Q 039757 254 VE----RK----NLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR 323 (415)
Q Consensus 254 ~~----~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~ 323 (415)
.. .| -..++..++.++.+ .+.+..-...-...| ..|........+ ..|+..+...|+
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~----------~~LA~l~~~~Gd 633 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLAL----------SMLAELEFLRGD 633 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHH----------HHHHHHHHhcCC
Confidence 33 11 22334444455444 444333333322222 123322222211 137788899999
Q ss_pred HHHHHHHHhcCCCC----CcCH--HHHHHHHH--HHhhcCChHHHHHHHHH
Q 039757 324 LEQAEKIALGIPSE----ITDV--VVRRILLG--ACSFHGNVEMGERVTRK 366 (415)
Q Consensus 324 ~~~A~~~~~~~~~~----~p~~--~~~~~l~~--~~~~~~~~~~a~~~~~~ 366 (415)
+++|...+.++... .|.+ .+-...+. .-...||.+.+.....+
T Consensus 634 l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 634 LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99998887766543 1222 12122222 23467888887777766
No 436
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.76 E-value=1.3e+02 Score=25.11 Aligned_cols=101 Identities=11% Similarity=0.040 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHhc--CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC--chhhHHHHHHHH
Q 039757 69 FTYSFLIRTCVTL--SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER--NLVTWNVMITGL 144 (415)
Q Consensus 69 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~ 144 (415)
..|...++++... ++++.|.+.+. .-.+.|+- -.-++.++...|+.+.|..+++....+ +...-..++..
T Consensus 77 ~~~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 77 PKYIKFIQGFWLLDHGDFEEALELLS---HPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHhC---CCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-
Confidence 3566777776544 45555555542 22222222 223677777789999999998887642 23333333444
Q ss_pred HhhCCHHHHHHHHhhCCCCC-hhHHHHHHHHH
Q 039757 145 VKWGELEYARSLFEEMPCRN-VVSWTGILDGY 175 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~ 175 (415)
..++.+.+|..+-+...++. ...+..++..+
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 66788999988887776532 23344444433
No 437
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.63 E-value=32 Score=30.28 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=68.4
Q ss_pred HHhHhcCCHHHHHHHHhcCCCC---Cc--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 316 DMLGRAGRLEQAEKIALGIPSE---IT--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
.-|.+.+++..|...|.+-... .| +...|+.=..+-...|++..|+.=....+...|.+...|..=..++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 3477889999999999765444 33 344666666666778999999999999999999998899888888989999
Q ss_pred hhhHHHHHHHHh
Q 039757 391 YVDAERLRRVMD 402 (415)
Q Consensus 391 ~~~A~~~~~~m~ 402 (415)
+++|....++..
T Consensus 169 ~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 169 FAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHhhhh
Confidence 888887776543
No 438
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.61 E-value=2.1e+02 Score=27.42 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh---hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh-------hH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLV---SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV-------TF 297 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~ 297 (415)
....++.-|.+.+++++|..++..|.-...... ..+.+...+.+..--++.+..++.+...=..|... .|
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 344678889999999999999999876422223 34445555566554455555555555432333322 22
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
..-+..+. ..+.+.+.+.+++++|..+--++..
T Consensus 490 ~d~V~~~a------RRfFhhLLR~~rfekAFlLAvdi~~ 522 (545)
T PF11768_consen 490 RDPVSDLA------RRFFHHLLRYQRFEKAFLLAVDIGD 522 (545)
T ss_pred HHHHHHHH------HHHHHHHHHhhHHHHHHHHHHhccc
Confidence 22222221 1245556667777777666555443
No 439
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.54 E-value=66 Score=26.61 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhcCChH-------HHHHHHHHHHHcccC------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhcccc
Q 039757 343 VRRILLGACSFHGNVE-------MGERVTRKVLEMERG------NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (415)
.+..+...|-..|+.+ .|.+.|.+..+.... .......++....+.|++++|.+.|.++...+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4445555566666643 455555555444322 12345567777788899999999988887765443
No 440
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.02 E-value=1.8e+02 Score=26.53 Aligned_cols=63 Identities=11% Similarity=-0.165 Sum_probs=43.2
Q ss_pred HHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
.+..+.+.+++..|.++|+++......|+...+...+..++ -.-.+...-++++|.+.++.+.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~--------~~y~~WD~fd~~~A~~~L~~~~ 198 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLT--------RAYLHWDRFEHEEALDYLNDPL 198 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHH--------HHHHHHHccCHHHHHHHHhhcc
Confidence 34456778899999999999998876666665544443321 1223456778899999998643
No 441
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=52.79 E-value=94 Score=23.14 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=68.1
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
+.+|..|..+...+...+. +...++.+....-.-.++++..++. ..... | .......+.-|.+.
T Consensus 2 enNp~IA~~~l~~l~~s~~-------~~~yld~lv~~~~sl~s~EvVn~L~---~~~~~--p----~efl~~yI~~cI~~ 65 (126)
T PF10155_consen 2 ENNPNIAIEILVKLINSPN-------FKEYLDVLVSMDMSLHSMEVVNRLT---TSFSL--P----QEFLHMYISNCIKS 65 (126)
T ss_pred CCcHHHHHHHHHHHcCCch-------HHHHHHHHHcCCCchhHHHHHHHHH---cCCCC--c----HHHHHHHHHHHHHH
Confidence 3577788888887766552 7888888888888888999998887 44433 3 23333333333322
Q ss_pred ----C-------CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhccc
Q 039757 82 ----S-------YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEL 129 (415)
Q Consensus 82 ----~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 129 (415)
. .....-.+++.+.+.++.-....+.-+=..|.+..++.+|-.+|+.+
T Consensus 66 ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 66 CESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHhhcccccccchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 1 22223344555566665444444555555566666677777776654
No 442
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.75 E-value=79 Score=30.37 Aligned_cols=132 Identities=9% Similarity=0.016 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCC
Q 039757 22 LHHTLLFNTLLHFYSLA--DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99 (415)
Q Consensus 22 ~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 99 (415)
-|+..+...++.-.... ...+-+-.++..|. +... | -=.+.|...-.+.-.|+...|...+..+.....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~----~~~~--p---~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p 638 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN----KPNA--P---IWLILNEAGLYWRAVGNSTFAIACLQRALNLAP 638 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc----CCCC--C---eEEEeecccceeeecCCcHHHHHHHHHHhccCh
Confidence 36666666665544432 33455666666664 2222 3 333344444445567888888888877654432
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
...-.....|.....+.|...+|-.++.+... ..+.++..+.+++....++++|++.|++..+
T Consensus 639 ~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 639 LQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 22223334466777777777777777765443 4456788888888888999999999987653
No 443
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.37 E-value=1.7e+02 Score=26.05 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CCChhhH--HHHHHHHHccCchHHHHHHHHHHHh-----cCCCCCh
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSW--TSIISGFAMHGMGKAAVENFERMQK-----VGLKPNR 294 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~--~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~ 294 (415)
.....++...-+.++.++|.++++++.+. .|+.+.| .....++...|+..++.+++.+.++ .|+.|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33444555566667888888888888766 3565554 4456677788888888888888777 5666644
Q ss_pred h
Q 039757 295 V 295 (415)
Q Consensus 295 ~ 295 (415)
.
T Consensus 156 h 156 (380)
T KOG2908|consen 156 H 156 (380)
T ss_pred h
Confidence 3
No 444
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.45 E-value=75 Score=21.80 Aligned_cols=67 Identities=3% Similarity=-0.169 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHH
Q 039757 44 AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS 123 (415)
Q Consensus 44 A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 123 (415)
+-++++.+. +.|+- +......+-.+--..|+.+.|.+++..+. .| | ..|...++++-..|.-+-|.
T Consensus 21 ~~~v~d~ll---~~~il------T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCL---EQGLL------TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHH---hcCCC------CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 456777777 66665 55555555554446788999999999997 54 3 35777888888888766654
Q ss_pred H
Q 039757 124 K 124 (415)
Q Consensus 124 ~ 124 (415)
+
T Consensus 87 e 87 (88)
T cd08819 87 E 87 (88)
T ss_pred c
Confidence 3
No 445
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.24 E-value=1.7e+02 Score=25.75 Aligned_cols=112 Identities=10% Similarity=-0.037 Sum_probs=0.0
Q ss_pred hhHHHHHHhHhhccCC---cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 6 NVTTRIHSHLLTTNSL---LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+.+.+.|...+..+.- ..++..-..++....+.|+.+.-..+++... .. + +......++.+++...
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~---~~-----~---~~~~k~~~l~aLa~~~ 215 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK---NS-----T---SPEEKRRLLSALACSP 215 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH---TT-----S---THHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh---cc-----C---CHHHHHHHHHhhhccC
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHH-HcCCChhHHHHHhcc
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMY-VSLGFLKDSSKLFDE 128 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~ 128 (415)
+++...++++.....+..++......+.... ...-..+.+.+.+..
T Consensus 216 d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 216 DPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp -HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 446
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.21 E-value=2.9e+02 Score=28.27 Aligned_cols=177 Identities=15% Similarity=0.070 Sum_probs=92.9
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCch
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 275 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 275 (415)
+-..|...|++++|.++-+.-.+. -..++..-.+.|...+++..|-++|-++.+ .|..+.--+....+.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~-----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~------~FEEVaLKFl~~~~~ 432 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDA-----LETVLLKQADFLFQDKEYLRAAEIYAETLS------SFEEVALKFLEINQE 432 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh------hHHHHHHHHHhcCCH
Confidence 334456677777776654332100 122333345567777888888888877643 355555555666655
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhH-hcCCHH----HHHHHHhc-----------CCCCCc
Q 039757 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG-RAGRLE----QAEKIALG-----------IPSEIT 339 (415)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~-~~g~~~----~A~~~~~~-----------~~~~~p 339 (415)
+ ++..|-.=+-..+.|...+-..++..+ |+..|. +.++++ ++..-++. ......
T Consensus 433 ~-~L~~~L~KKL~~lt~~dk~q~~~Lv~W---------Llel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~ 502 (911)
T KOG2034|consen 433 R-ALRTFLDKKLDRLTPEDKTQRDALVTW---------LLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHK 502 (911)
T ss_pred H-HHHHHHHHHHhhCChHHHHHHHHHHHH---------HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5 444332212223456666555544443 444332 223322 22222111 000011
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
+...+.+..+.+...|+.+....+-.-+. -|..++..+..+|.+++|.+++..-
T Consensus 503 ~~~nretv~~l~~~~~~~e~ll~fA~l~~--------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 503 DELNRETVYQLLASHGRQEELLQFANLIK--------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HhhhHHHHHHHHHHccCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22233344445556677777666555543 3567788888899999999887654
No 447
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.20 E-value=1.8e+02 Score=25.85 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=31.4
Q ss_pred HHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 039757 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252 (415)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (415)
+..+.|+..+|.+.++.+.+.--...-..+...|+.++....-+.+...++-+-
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335678888888888877766211111234456777777666555555554443
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.15 E-value=30 Score=32.02 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=74.9
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCch
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMG 275 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 275 (415)
+......++++.|..++.++++. .|.....|..=..++.+.+++..|..=+.++.+..|+ ...|-.-..++...+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34455677889999999999987 5645556655567889999999999888888775443 23344444555556677
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 276 KAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
.+|...|+.... +.|+..-+...+.-|-
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 778887777666 5899988877666653
No 449
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.83 E-value=58 Score=24.59 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=10.7
Q ss_pred HHHHccCchHHHHHHHHHHHh
Q 039757 267 SGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~ 287 (415)
-++.+.++++++.++++.+.+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 344455555555555555544
No 450
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.85 E-value=1.3e+02 Score=26.05 Aligned_cols=20 Identities=0% Similarity=-0.051 Sum_probs=9.8
Q ss_pred HHHHHhHhcCCHHHHHHHHh
Q 039757 313 CLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~ 332 (415)
.+.+.|++.++.+.+.+...
T Consensus 120 n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 120 NIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHhhhhhHHHHHH
Confidence 34445555555555544443
No 451
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.82 E-value=2.2e+02 Score=26.47 Aligned_cols=218 Identities=12% Similarity=-0.044 Sum_probs=121.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
+.++...| ..+...+-...... ++...+.....++....+...+..+.+.+..++...-...++++...+...-.-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 66666777 45666666655432 333444444444443333333566667777777777888888888888777766
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCC-C----CccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRS-N----GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~-~----~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (415)
.+......++...-...+.++...+.- . .++..++...-...+.++...+..+....+ ..+... .+..+-
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L-~~al~d----~~~~VR 195 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAALRALGELPRRLSESTL-RLYLRD----SDPEVR 195 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHH-HHHHcC----CCHHHH
Confidence 666666666665555555665543311 0 111344555555666666666665444433 333322 277777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
..-+.+....|. +.|...+...... ++....-.+...+...|. +++...+..+.+. +. +-...+.++...|.
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~~~~~-~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d---~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRRFQVL-EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA---AA--TRREALRAVGLVGD 267 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHHHHhc-cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC---hh--hHHHHHHHHHHcCC
Confidence 778888888887 6666666552221 444444444444444443 3666666666553 22 44444444444333
No 452
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.57 E-value=2.3e+02 Score=26.73 Aligned_cols=254 Identities=11% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC----------chhHHHHHHHHHh
Q 039757 11 IHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD----------SFTYSFLIRTCVT 80 (415)
Q Consensus 11 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~----------~~~~~~l~~~~~~ 80 (415)
+|.|+.+.. -.+.+|......-.-.|-+++|.+.-++++..-..-.. - + ..+...++..-.-
T Consensus 264 l~~wlpkeq---icaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq--~---d~~srilsm~km~~LE~iv~c~lv 335 (629)
T KOG2300|consen 264 LFEWLPKEQ---ICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ--A---DLMSRILSMFKMILLEHIVMCRLV 335 (629)
T ss_pred HHhhccHhh---hHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc--c---cchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCchHHHHHHHHHHcCCCCch---------hhHHHHHHHHHcCCChhHHHHHhcccCC------CchhhHHHHHHHHH
Q 039757 81 LSYPNLGTQLHAVISKVGFQSHV---------YVNTALVNMYVSLGFLKDSSKLFDELPE------RNLVTWNVMITGLV 145 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~g~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~ 145 (415)
.|++.+|++-...|++..-.-.. .....+.--++..|.++.|+.-|....+ --...-..+.-.|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q ss_pred hhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
+.|+-+.-.++++.+ .+++..++.+..- .
T Consensus 416 ~~~~~ed~y~~ld~i-------------------------~p~nt~s~ssq~l--------------------------~ 444 (629)
T KOG2300|consen 416 RIGDAEDLYKALDLI-------------------------GPLNTNSLSSQRL--------------------------E 444 (629)
T ss_pred HhccHHHHHHHHHhc-------------------------CCCCCCcchHHHH--------------------------H
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-------CCChhhHHHHHHHHHccCchHHHHHHHHH-HHhcCCCCChhhH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVE-------RKNLVSWTSIISGFAMHGMGKAAVENFER-MQKVGLKPNRVTF 297 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~-m~~~g~~p~~~~~ 297 (415)
..++-.-.-...+.+++.+|..++++-.+. +-.......|-..+..-|+..++.+.++- |.-..-.||..+-
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCC--HHHHHHHHhc
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGR--LEQAEKIALG 333 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~ 333 (415)
-....- +-+.|...|+ .+...+.|..
T Consensus 525 Lws~si----------~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 525 LWSSSI----------LTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHH----------HHHHHHHhCcchhhHHHHHHHH
No 453
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=49.29 E-value=3.4e+02 Score=28.48 Aligned_cols=314 Identities=9% Similarity=-0.025 Sum_probs=145.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHH-------HHHhcCC---CchHHHHHHHHHHcC
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIR-------TCVTLSY---PNLGTQLHAVISKVG 98 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~-------~~~~~~~---~~~a~~~~~~~~~~g 98 (415)
-++=+++...+.+++|+..++++. ..=+. -.+.|.+..+ -....|+ +++|+.-|+.+...
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 548 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIR---ESFPG------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG- 548 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHh---hcCCC------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-
Confidence 344567788889999999999986 32222 3344443332 2233343 45566666655322
Q ss_pred CCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-----C------c--------------hhhHHHHHHHHHh---hCCH
Q 039757 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-----R------N--------------LVTWNVMITGLVK---WGEL 150 (415)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~------~--------------~~~~~~li~~~~~---~g~~ 150 (415)
+--+--|..-.-+|-+.|++++-.+.+.-..+ | | ..+|.-|+-+..- .-..
T Consensus 549 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 549 -VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred -CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 22233354455668888998877666554332 1 1 1122222222211 1112
Q ss_pred HHHHHHHhhCC---CC--------ChhH-----HHHHHHHHHh-----ccCCCCccCCCchHHHHhHHHHHhhcCChhHH
Q 039757 151 EYARSLFEEMP---CR--------NVVS-----WTGILDGYTR-----MNRSNGASTEPSEITILAVLPAIWQNGAVRNC 209 (415)
Q Consensus 151 ~~a~~~~~~m~---~~--------~~~~-----~~~li~~~~~-----~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a 209 (415)
.+-.++|+.+. ++ .+.+ +..++..+.- -+-++.+...++-.+...+.-..+..|.++-+
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (932)
T PRK13184 628 REEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFF 707 (932)
T ss_pred hHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHH
Confidence 23344444433 11 1111 1222222211 11111222334445555555566777777777
Q ss_pred HHHHhhhhhcC---CCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh--hhHHHHHHHHHccCchH
Q 039757 210 QLIHGYGEKRG---FNAFDI--------RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL--VSWTSIISGFAMHGMGK 276 (415)
Q Consensus 210 ~~~~~~~~~~~---~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~ 276 (415)
.+....+...- -.|.+. ..|-.-+.+......++++.+.+.... |.. ..+..++.-..-.++.+
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 784 (932)
T PRK13184 708 SQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD---PTLILYAFDLFAIQALLDEEGE 784 (932)
T ss_pred HHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC---HHHHHHHHHHHHHHHHHhccch
Confidence 66655554321 011011 112222334444445555555444332 221 23444444444445555
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHH--Hhh
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGA--CSF 353 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~--~~~ 353 (415)
....+.+.+... +........+..+ -|.+|.-..++++|-+++...... -.+..+...++.+ ++-
T Consensus 785 ~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (932)
T PRK13184 785 SIIQLLQLIYDY---VSEEERHDHLLVY---------EIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLAL 852 (932)
T ss_pred HHHHHHHHHHhc---cCChhhhhhhhHH---------HHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHh
Confidence 555555555443 2222222222222 567777888888888888766554 1122222222333 345
Q ss_pred cCChHHHHHHHHHHH
Q 039757 354 HGNVEMGERVTRKVL 368 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~ 368 (415)
.++.+.|...|....
T Consensus 853 ~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 853 TEDREAAKAHFSGCR 867 (932)
T ss_pred cCchhHHHHHHhhcc
Confidence 566666766666655
No 454
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.13 E-value=59 Score=22.20 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
+...|..-++.....+ .+=.++|+.....|+..|..+|..+++.+.-.=-.+...++++.|.
T Consensus 9 ~~~~~k~~~~rk~~Ls--~eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS--AEEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccC--HHHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4445555444322222 1223899999999999999999999998766666777777777775
No 455
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.02 E-value=1.9e+02 Score=25.68 Aligned_cols=120 Identities=16% Similarity=0.019 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhh
Q 039757 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSF 353 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 353 (415)
.+.-+.++++..+. .|+...... .++..+.+..+.++..+.++++....| +...|...+.....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l-------------~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLL-------------GYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHH-------------HHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 45667788887776 565554332 145556667777777788888777655 56688887776544
Q ss_pred ---cCChHHHHHHHHHHHHcccC-----------CC-------ccHHHHHHHHHhcCchhhHHHHHHHHhhhccccC
Q 039757 354 ---HGNVEMGERVTRKVLEMERG-----------NG-------GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409 (415)
Q Consensus 354 ---~~~~~~a~~~~~~~~~~~~~-----------~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 409 (415)
.-.++....+|.+.++.-.. .. ..+..+...+..+|-.+.|..+++.+.+.++-.+
T Consensus 112 ~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 112 NFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 23466666666665542211 01 2344455556778999999999999998887433
No 456
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=48.80 E-value=62 Score=21.20 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHhhhh-CCChhhHHHHHHHHHcc
Q 039757 241 CIFSALKLFEDISVE-RKNLVSWTSIISGFAMH 272 (415)
Q Consensus 241 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~ 272 (415)
+.+.|..++.++... +.++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 455566666666554 34566677766655554
No 457
>PF13934 ELYS: Nuclear pore complex assembly
Probab=48.13 E-value=1.6e+02 Score=24.56 Aligned_cols=103 Identities=18% Similarity=0.127 Sum_probs=54.8
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhhhhCCCh-hh-HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 229 SNCLIDTYA--KCGCIFSALKLFEDISVERKNL-VS-WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 229 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~-~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
|..+++++- ..+++++|.+.+-. |.. .+ -.-++.++...|+.+.|+.+++.+. |...+...+.
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~-----p~l~s~~~~~--- 145 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVG-----PPLSSPEALT--- 145 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcC-----CCCCCHHHHH---
Confidence 444555543 33566666666622 222 11 2346677777788888877777753 3333322111
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhc
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFH 354 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 354 (415)
+......++.+.+|..+-+..... -....+..++..+...
T Consensus 146 ---------~~~~~La~~~v~EAf~~~R~~~~~-~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 146 ---------LYFVALANGLVTEAFSFQRSYPDE-LRRRLFEQLLEHCLEE 185 (226)
T ss_pred ---------HHHHHHHcCCHHHHHHHHHhCchh-hhHHHHHHHHHHHHHH
Confidence 111125567777887777666654 1234666666666543
No 458
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.72 E-value=52 Score=24.39 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=36.6
Q ss_pred CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHH
Q 039757 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
.|++.....-+++|.+.+|+..|.++|+-++.+-.+....|-.++
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 489999999999999999999999999998877665444555444
No 459
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.72 E-value=43 Score=21.48 Aligned_cols=56 Identities=11% Similarity=-0.045 Sum_probs=43.3
Q ss_pred cCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhH
Q 039757 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394 (415)
Q Consensus 339 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 394 (415)
|....++.++..+++..-.++++..+.++...+.-+...|..-++.+++..-+..|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ra 61 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRA 61 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888899999999999998887788888888888776544433
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.57 E-value=2e+02 Score=25.50 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHh----cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQK----VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
..+-....-||+-|+.+.|++.+++-.. .|.+.|...+.+=+.-+ .++.-.-...++.|..++++--
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglf---------y~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLF---------YLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh---------hccHHHHHHHHHHHHHHHHhCC
Confidence 3466677889999999999988877543 47788877766543332 1222223345667777776554
Q ss_pred CC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CCccHHHHH
Q 039757 336 SE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG-NGGDYVLMY 382 (415)
Q Consensus 336 ~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~ 382 (415)
.- +....+|..+- |....++.+|-.+|-........ ...+|..++
T Consensus 176 DWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v 223 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFV 223 (393)
T ss_pred ChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHH
Confidence 33 23444665543 34556899999998887765544 333344333
No 461
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.54 E-value=3.3e+02 Score=27.96 Aligned_cols=177 Identities=11% Similarity=-0.016 Sum_probs=113.5
Q ss_pred hCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc-CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
..++++.+.+.+.-.-.+ .++|.-+.+.|..+-|+ ..-|+.+-..| +...|+.+.|.+.-..+ .+
T Consensus 606 ~k~ydeVl~lI~ns~LvG----qaiIaYLqKkgypeiAL~FVkD~~tRF~L---aLe~gnle~ale~akkl-------dd 671 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG----QAIIAYLQKKGYPEIALHFVKDERTRFEL---ALECGNLEVALEAAKKL-------DD 671 (1202)
T ss_pred hhhhHHHHHHHHhcCccc----HHHHHHHHhcCCcceeeeeecCcchheee---ehhcCCHHHHHHHHHhc-------Cc
Confidence 456777777766554332 35666677888888887 33344433222 23467777776654432 27
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
..+|..|+......|+.+-|+..|++.+. |+.|--.|.-.|+.++-.++.+..+.+ -|..+-. ..
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~kn-------fekLsfLYliTgn~eKL~Km~~iae~r---~D~~~~~--qn--- 736 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTKN-------FEKLSFLYLITGNLEKLSKMMKIAEIR---NDATGQF--QN--- 736 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhhh-------hhheeEEEEEeCCHHHHHHHHHHHHhh---hhhHHHH--HH---
Confidence 88999999999999999999999988766 666666778888888877766655442 2332211 11
Q ss_pred cCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
-.-.|+.++-.++++..... +. .|- .-..+|.-++|.++.++.....
T Consensus 737 ------------alYl~dv~ervkIl~n~g~~--~l-ayl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 737 ------------ALYLGDVKERVKILENGGQL--PL-AYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred ------------HHHhccHHHHHHHHHhcCcc--cH-HHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 12357888888888776654 21 121 1235677788888888877644
No 462
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=47.38 E-value=1.5e+02 Score=23.98 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh----CCChhhHHHHHH-HHHccCc--hHHHHHHHHHHHhcCCCCChh
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVE----RKNLVSWTSIIS-GFAMHGM--GKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~-~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 295 (415)
+..+-.....|++++|..-++++.+. +.-...|..+.. +++.++. +-+|..++.-+.. +..|+..
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~-~~~ps~~ 104 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD-GRLPSPE 104 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc-CCCCCHH
Confidence 34444566778899999888887665 223345666665 5666664 4556655555443 4455544
No 463
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=47.33 E-value=59 Score=26.20 Aligned_cols=98 Identities=10% Similarity=0.064 Sum_probs=67.0
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC----------
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN---------- 222 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------- 222 (415)
|..+.++-++...+.|.....+-++.-..+++...+-..+-.+++-.|-+..++.+.++++..+.+..+.
T Consensus 95 a~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~ 174 (233)
T PF14669_consen 95 AEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGP 174 (233)
T ss_pred HHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCc
Confidence 3444555555445556666666666544444433444445567788889999999999999999864321
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 223 ---AFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 223 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
.+.-.+.|.....+.++|.+|.|..+++
T Consensus 175 e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 175 EKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred cccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 1134567888899999999999999887
No 464
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.09 E-value=2.1e+02 Score=26.34 Aligned_cols=62 Identities=10% Similarity=-0.074 Sum_probs=33.4
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH---HHHH----HHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV---VRRI----LLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
..|.|++.|...+.++.|.++.....- |+.. -|.. +....+-.+++..|.+.|-.+....|.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 446666677777777777766654431 2111 1111 112223456677777777777666665
No 465
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.91 E-value=2.1e+02 Score=25.46 Aligned_cols=123 Identities=14% Similarity=-0.009 Sum_probs=81.6
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc---cCchHHHHHH
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM---HGMGKAAVEN 281 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~A~~~ 281 (415)
.+.-..+++++++. .|.+......++..+.+..+.++..+-++++....| +...|...|..... .-.++....+
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35556778888877 567888899999999999999999999999988755 56667777765544 2345555555
Q ss_pred HHHHHhc------CC----CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 282 FERMQKV------GL----KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 282 ~~~m~~~------g~----~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
|.+..+. |. .+-..+...++..+ ..+...+.++|..+.|..+++.+.+-
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~-------~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF-------LRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHH-------HHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 5554321 11 11122233333332 23566678889999998888876554
No 466
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.69 E-value=2.8e+02 Score=26.84 Aligned_cols=158 Identities=10% Similarity=-0.002 Sum_probs=87.1
Q ss_pred hcCChhHHHHHHhhhhhcCC----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----------------
Q 039757 202 QNGAVRNCQLIHGYGEKRGF----------NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---------------- 255 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------- 255 (415)
....++++...|...+...- .|....+.-.+..++-.+|+.+.|.++.++..-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44566677776666554310 1223334444556777888877777666553211
Q ss_pred -----CC-ChhhHHHH---HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHH
Q 039757 256 -----RK-NLVSWTSI---ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326 (415)
Q Consensus 256 -----~~-~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~ 326 (415)
.| |...|-+| |..+.+.|-+..|.++-+-+.+....-|......+|..| ..++.++.-
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~-------------ALrareYqw 396 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY-------------ALRAREYQW 396 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH-------------HHHHHhHHH
Confidence 01 22223333 456677899999999888888754333444444444443 245556666
Q ss_pred HHHHHhcCCCC-----CcCHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHccc
Q 039757 327 AEKIALGIPSE-----ITDVVVRRILLGACSFHGN---VEMGERVTRKVLEMER 372 (415)
Q Consensus 327 A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~ 372 (415)
-++++++.... -|+-..-.++...|.+... -+.|...+.++....|
T Consensus 397 iI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 397 IIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 66666544221 4665555556666665544 3455555555554443
No 467
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.22 E-value=1e+02 Score=25.39 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=63.7
Q ss_pred CHHHHHHHHhcCCCC----Cc-----CHHHHHHHHHHHhhcC---------ChHHHHHHHHHHHHcccC--CCccHHHHH
Q 039757 323 RLEQAEKIALGIPSE----IT-----DVVVRRILLGACSFHG---------NVEMGERVTRKVLEMERG--NGGDYVLMY 382 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~----~p-----~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 382 (415)
..+.|..++..|--. .| ...-|..+..+|.+.| +.+.-.++++..++.+.+ =+..|..++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 468889999888655 22 4567889999999987 557778888888998877 567888888
Q ss_pred HHHHhcCchhhHHHHHHHHh
Q 039757 383 NILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~ 402 (415)
+--...-+.++..+++..+.
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 87777778999999887764
No 468
>PRK12798 chemotaxis protein; Reviewed
Probab=45.18 E-value=2.5e+02 Score=25.90 Aligned_cols=180 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHHHHHccC-chHHHHHHHHHHHh
Q 039757 211 LIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHG-MGKAAVENFERMQK 287 (415)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~ 287 (415)
.+++.+...+..+........-+..|. .|+.++|.+.+..+... ++....|-.|+.+-...+ ++.+|+++|+..+-
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL 176 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL 176 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH
Q ss_pred cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---CcCHH-HHHHHHHHHhhcCChHHHHHH
Q 039757 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVV-VRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~-~~~~l~~~~~~~~~~~~a~~~ 363 (415)
. -|....=...+.- -+....+.|+.+++..+-.....+ .|-.. .+..+..++.+.++-..-..+
T Consensus 177 l--aPGTLvEEAALRR----------si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l 244 (421)
T PRK12798 177 L--APGTLVEEAALRR----------SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARL 244 (421)
T ss_pred h--CCchHHHHHHHHH----------hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHH
Q ss_pred HHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 364 TRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 364 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
...+...+++ ....|..+.+.-.-.|+.+-|.-.-++...
T Consensus 245 ~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~ 285 (421)
T PRK12798 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALK 285 (421)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
No 469
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.80 E-value=1.2e+02 Score=26.68 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh-----
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF----- 353 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----- 353 (415)
.++|+.|+..++.|.-..|.. +.-.+.+.=.+.+.+.+++.+... ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRW--------------itLLLsQEF~lpDvi~lWDsl~sD---~~rfd~Ll~iCcsmlil~ 325 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRW--------------ITLLLSQEFPLPDVIRLWDSLLSD---PQRFDFLLYICCSMLILV 325 (370)
T ss_pred HHHHHHHHhcCCCccchhHHH--------------HHHHHhccCCchhHHHHHHHHhcC---hhhhHHHHHHHHHHHHHH
Confidence 578999999999999998887 444577888899999999998875 3337777776664
Q ss_pred -----cCChHHHHHHHH
Q 039757 354 -----HGNVEMGERVTR 365 (415)
Q Consensus 354 -----~~~~~~a~~~~~ 365 (415)
.||+...+++++
T Consensus 326 Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 326 RERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHhcchHHHHHHHh
Confidence 466666665554
No 470
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.23 E-value=2.9e+02 Score=26.26 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=64.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHH--hhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGAC--SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (415)
+.+++.+.+.|-..+|...+..+... .|+...|.-+++.- ...-+..-+.++++.+......++..|.....--...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 45777788888899999999888777 45777777777642 2233477788888888776667888887777766677
Q ss_pred CchhhHHHHHHH
Q 039757 389 GRYVDAERLRRV 400 (415)
Q Consensus 389 g~~~~A~~~~~~ 400 (415)
|+.+.+-.++-+
T Consensus 544 g~~en~~~~~~r 555 (568)
T KOG2396|consen 544 GRPENCGQIYWR 555 (568)
T ss_pred CCcccccHHHHH
Confidence 777776665433
No 471
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.16 E-value=2e+02 Score=24.32 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=7.0
Q ss_pred hcCchhhHHHHHHHHh
Q 039757 387 GVGRYVDAERLRRVMD 402 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~ 402 (415)
..|++.+|+.++++..
T Consensus 166 ~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.74 E-value=1.5e+02 Score=22.75 Aligned_cols=58 Identities=5% Similarity=-0.055 Sum_probs=39.5
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCCh
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 119 (415)
..|.+ + +.--..++..+...++.-.|.++++.+.+.+...+..|.=.-++.+...|-+
T Consensus 14 ~~glr--~----T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 14 EAGLR--L----TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HcCCC--c----CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 67777 3 3345567777788877788999999998877655544433355777777644
No 473
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.66 E-value=3.4e+02 Score=27.33 Aligned_cols=178 Identities=11% Similarity=0.051 Sum_probs=98.8
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-----FD-IRVSNCLIDTYAKCGCIFSALKLFEDISVE---- 255 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 255 (415)
......+...++-.|....+++...++.+.+.+..-.- .+ ...|.-.++---+-|+-++|....-.+.+.
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 34556677888888999999999999988887652000 00 112222333334457788888887777665
Q ss_pred CCChhh-----HHHH--HHHHHccCchHHHHHHHHHHHhcCCCCChhh---HHHHHHHHccCCc-------chHHHHHHh
Q 039757 256 RKNLVS-----WTSI--ISGFAMHGMGKAAVENFERMQKVGLKPNRVT---FLSVLNACSHGGL-------HYGCLVDML 318 (415)
Q Consensus 256 ~~~~~~-----~~~l--i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~-------~~~~li~~~ 318 (415)
.||... |.-+ -+.|...+..+.|.++|++.-+ +.|+..+ +..++.+-++.=. .-..|-..+
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~Ll 354 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLL 354 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHh
Confidence 255433 2211 1234455667788899988765 3565433 3333333211100 001122234
Q ss_pred HhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
.+.|.++.-...| |+.+| +.+-.-++++.+|.+.-+.|.+..+|...
T Consensus 355 grKG~leklq~YW--------dV~~y---~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 355 GRKGALEKLQEYW--------DVATY---FEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred hccchHHHHHHHH--------hHHHh---hhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 4455444443333 22222 33334567888888888888888877443
No 474
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.36 E-value=3e+02 Score=26.96 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
+.|+..+|.+.+-.+...++.|......-+.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 3477788887777777777778776655433
No 475
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.89 E-value=1.1e+02 Score=20.90 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHH
Q 039757 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
....+.++|.+++..+..+ ....|..+..++...|....|
T Consensus 41 ~~~tr~~q~~~LLd~L~~R--G~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETR--GKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCchHHH
Confidence 3455677788887777776 667777777777776655444
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.84 E-value=2.6e+02 Score=28.68 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=84.6
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li 315 (415)
+..+|+++.|.+.-.++ -+..+|..|.......|+.+-|+..|++.+.. +. |-
T Consensus 653 aLe~gnle~ale~akkl----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf----ek-------------------Ls 705 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL----DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF----EK-------------------LS 705 (1202)
T ss_pred ehhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh----hh-------------------ee
Confidence 45567777777766655 46678999999999999999999999887642 22 22
Q ss_pred HHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
-.|.-.|+.++-.++.+-...+ .|..+. ...-.-.|++++-.+++... -.-+-+|. .-...|.-++|.
T Consensus 706 fLYliTgn~eKL~Km~~iae~r-~D~~~~---~qnalYl~dv~ervkIl~n~----g~~~layl----ta~~~G~~~~ae 773 (1202)
T KOG0292|consen 706 FLYLITGNLEKLSKMMKIAEIR-NDATGQ---FQNALYLGDVKERVKILENG----GQLPLAYL----TAAAHGLEDQAE 773 (1202)
T ss_pred EEEEEeCCHHHHHHHHHHHHhh-hhhHHH---HHHHHHhccHHHHHHHHHhc----CcccHHHH----HHhhcCcHHHHH
Confidence 2367788888877776554433 233221 11222456777766666542 11222221 223468888999
Q ss_pred HHHHHHhhhccc
Q 039757 396 RLRRVMDERNAL 407 (415)
Q Consensus 396 ~~~~~m~~~~~~ 407 (415)
++.++.......
T Consensus 774 ~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 774 KLGEELEKQVPS 785 (1202)
T ss_pred HHHHhhccccCC
Confidence 999998875544
No 477
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.47 E-value=2.4e+02 Score=24.86 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHh----------hCCHHHHHHHH
Q 039757 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK----------WGELEYARSLF 157 (415)
Q Consensus 88 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~~ 157 (415)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+++.+++.+.. |..-|..|+..||. .|++.-..+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 56788888889999888887777777888889999999999874 22226666666653 58999999998
Q ss_pred hhCCCCChhHH
Q 039757 158 EEMPCRNVVSW 168 (415)
Q Consensus 158 ~~m~~~~~~~~ 168 (415)
+.-..-|+...
T Consensus 342 Q~yp~tdi~~~ 352 (370)
T KOG4567|consen 342 QNYPTTDISKM 352 (370)
T ss_pred hcCCCCCHHHH
Confidence 88765554443
No 478
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=41.70 E-value=2.8e+02 Score=26.67 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=53.5
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc---CCC--------CCCCCCCchhHH
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH---SHS--------PLRPLFDSFTYS 72 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~--------~~p~~~~~~~~~ 72 (415)
+............+..++..+......++.. ..|+...|+..++++...... .+. +.. +....-
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~---~~~~if 262 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLV---DSSVII 262 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCC---CHHHHH
Confidence 3445555556666655676676666666653 468889998888887521110 010 001 223333
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.++.+. ..|+.+.|..+++.+...|..|.
T Consensus 263 ~L~~ai-~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 263 EFVEYI-IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 344433 34777778888888877776554
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.67 E-value=1.2e+02 Score=29.68 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=51.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCch------HHHHHHHHHHcCCCCch
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL------GTQLHAVISKVGFQSHV 103 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~g~~~~~ 103 (415)
+|+.+|..+|++.++.++++.+. .++-.... -...+|.-|+...+.|.++. +.++++.. .+.-|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~---~~~~~~k~---~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~ 103 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI---DHNKGDKI---LLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDS 103 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCcCCee---ehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcc
Confidence 89999999999999999999998 33222001 34578888999999997753 33333333 345577
Q ss_pred hhHHHHHHHH
Q 039757 104 YVNTALVNMY 113 (415)
Q Consensus 104 ~~~~~li~~~ 113 (415)
.||..|+.+-
T Consensus 104 ~t~all~~~s 113 (1117)
T COG5108 104 LTYALLCQAS 113 (1117)
T ss_pred hHHHHHHHhh
Confidence 7777666543
No 480
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=40.63 E-value=93 Score=23.39 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHH
Q 039757 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379 (415)
Q Consensus 339 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 379 (415)
+|.+.. .++--+...|+++.|+.+.+.+++++.+-+.-|.
T Consensus 47 qd~Vl~-~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~ 86 (132)
T PF05944_consen 47 QDDVLM-TVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRFK 86 (132)
T ss_pred cCchHH-hhHhhhhcccCHHHHHHHHHHHHHcCCCcccccc
Confidence 454333 3444466888888888888888888866444333
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.60 E-value=2e+02 Score=23.46 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhh-HHHHHHHHHccCchHHHHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVS-WTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
....+.+++.+...|+++.|.+.|.-+...+ .|+.. |..=+..+.+.+......+.++.|.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3445677788888888888888888776652 34432 4444455555554444434554443
No 482
>PRK09857 putative transposase; Provisional
Probab=40.55 E-value=1.3e+02 Score=26.33 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
+..++......++.++..++++.+.+..+........++.-+...|.-+++.++.++|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456665567788887888888887775555566677888888889888899999999888865
No 483
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.33 E-value=3.3e+02 Score=25.85 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.1
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (415)
...+.++...++++.+...|... .+..++.-...|.+.|...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~-~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESS-GPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccc-cceeeehhhHHHHhcccch
Confidence 55788999999999999998665 6667888888888888654
No 484
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=40.22 E-value=2.9e+02 Score=25.12 Aligned_cols=273 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHc-------CCCCchhhHHHHHHHHHc--------CCC--hhHHHHHhcccCC-
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKV-------GFQSHVYVNTALVNMYVS--------LGF--LKDSSKLFDELPE- 131 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~--------~g~--~~~a~~~~~~~~~- 131 (415)
+|..++.+..+.+......+-.....+. ..++....+-+.+....+ .+. .+....+|+....
T Consensus 3 ~w~~~i~s~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~p~LA~lel~~~~~~~~~~~~~~~~~~~l~~Y~~~f~~K 82 (365)
T PF09797_consen 3 VWKLLIDSAFELGKSEEELEDVQEFLESLQAESSQSNPKSRGPYLARLELAKRLRERGDAPDEEDLLELLEEYFDKFGSK 82 (365)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHhCCC
Q ss_pred ----CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc---cCCCCccCCCchHHHHhHHHHHhhcC
Q 039757 132 ----RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM---NRSNGASTEPSEITILAVLPAIWQNG 204 (415)
Q Consensus 132 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~ll~~~~~~~ 204 (415)
.|...|...+..-....-.+...+........+.......++++.-. |................++..|...-
T Consensus 83 ~cCf~DL~~Y~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~in~~kl~r~~~~~~~~~~~~~~~~~~~~~~~y~~~l 162 (365)
T PF09797_consen 83 PCCFDDLKPYLESLDPEERKELLEKLLEKIEADSKEDIKQLIRHINALKLSRFLGLHFSLSSESLLDLAQELLKLYQESL 162 (365)
T ss_pred CEeHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhcccccCChhhHHHHHHHHHHHHHhhC
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK-------CGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~ 276 (415)
....... ....| ........+..+.. ...+-+|.-+++......| |...--.++..|...|-..
T Consensus 163 ~~~~~l~-------te~~~-~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~ 234 (365)
T PF09797_consen 163 SLGKDLK-------TESQP-ADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGS 234 (365)
T ss_pred ccccccc-------cccCc-hHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHH-HHHhcCCCC-CcCHHHHHHHHHHHhhc
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAE-KIALGIPSE-ITDVVVRRILLGACSFH 354 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~-~p~~~~~~~l~~~~~~~ 354 (415)
.|..+|..+.-+.++-|...+. +..-+...|....+. ..++....- .-+..-....+....+.
T Consensus 235 ~A~~~~~~L~iK~IQ~DTL~h~---------------~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~ 299 (365)
T PF09797_consen 235 LALEHYESLDIKNIQLDTLGHL---------------ILDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFEN 299 (365)
T ss_pred HHHHHHHhcChHHHHHHHhHHH---------------HHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred CChHHHHHHHH
Q 039757 355 GNVEMGERVTR 365 (415)
Q Consensus 355 ~~~~~a~~~~~ 365 (415)
|.+.+..++.+
T Consensus 300 gsysKi~ef~~ 310 (365)
T PF09797_consen 300 GSYSKIEEFIE 310 (365)
T ss_pred CCchhHHHHHH
No 485
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.19 E-value=1.5e+02 Score=29.05 Aligned_cols=91 Identities=9% Similarity=0.070 Sum_probs=43.9
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCC-CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHhhhhCCChhhHHHHHH
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGF-NAFDIRVSNCLIDTYAKCGCIF------SALKLFEDISVERKNLVSWTSIIS 267 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~li~ 267 (415)
+++.+|...|++-.+.++++......- ...-...+|..|+...+.|.++ .|.++++...- .-|..||..|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-n~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-NGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-CCcchHHHHHHH
Confidence 666667777777777666666654321 1112445566666666666433 22223322221 245555655555
Q ss_pred HHHccCchHHHHHHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~ 286 (415)
+-..--.-.-..-++.+++
T Consensus 112 ~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hhcChHhHHhccHHHHHHH
Confidence 5444333333333344433
No 486
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=39.91 E-value=1.4e+02 Score=21.40 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC--CCchHHHHHHHHHHcC
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS--YPNLGTQLHAVISKVG 98 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g 98 (415)
...++.-|...+++++|.+.+.++. .... .......++..+...+ .-+....++..+.+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~---~~~~-------~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELK---LPEQ-------HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhC---CCcc-------hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 3457778888999999999999886 2211 3344455555555543 2234445555555544
No 487
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.89 E-value=87 Score=19.06 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKN 258 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~ 258 (415)
+.-++.+.|++++|.+..+.+.+..|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 334455666666666666665555443
No 488
>PRK12356 glutaminase; Reviewed
Probab=39.65 E-value=2.7e+02 Score=24.70 Aligned_cols=45 Identities=7% Similarity=0.125 Sum_probs=22.8
Q ss_pred HHHHhhCC-CCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHH
Q 039757 154 RSLFEEMP-CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP 198 (415)
Q Consensus 154 ~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~ 198 (415)
..+|+++- +|+...||.++..-...|+...-...--..+...++.
T Consensus 86 ~~V~~~VG~EPSG~~FNsi~~Le~~~g~P~NPmINAGAI~~~sll~ 131 (319)
T PRK12356 86 QAVREKIGADPTGLPFNSVIAIELHGGKPLNPLVNAGAIATTSLVP 131 (319)
T ss_pred HHHHHHhCCCCCCCCcchHHHhhccCCCCCCccccHHHHHHHHhcc
Confidence 44555554 5666777777655544454443333333333444444
No 489
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.41 E-value=48 Score=21.24 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=40.0
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
+.|+...++.++...++..-.+.++..+.++. ..|.- +..+|.--++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al---~~g~I------~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRAL---QRGSI------DLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSS-------HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCC------CHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999 67665 66677666666554
No 490
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.07 E-value=3.2e+02 Score=25.30 Aligned_cols=57 Identities=16% Similarity=0.008 Sum_probs=45.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC-------Cc--CHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE-------IT--DVVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
-.|++..+-.|++..|+++++.+.-. .| .+.++-.+.-+|...+++.+|.+.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889999999999999877544 12 44567777888899999999999998875
No 491
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=38.82 E-value=88 Score=19.93 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=20.6
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
.+++--.+-| |..|.+++++|.+.|+...+
T Consensus 23 S~lQR~~~IG-ynrAariid~lE~~GiV~p~ 52 (63)
T smart00843 23 SLLQRRLRIG-YNRAARLIDQLEEEGIVGPA 52 (63)
T ss_pred HHHHHHHhcc-hhHHHHHHHHHHHCcCCCCC
Confidence 3444444444 67888899999999987654
No 492
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.75 E-value=1.3e+02 Score=26.84 Aligned_cols=53 Identities=11% Similarity=-0.070 Sum_probs=36.7
Q ss_pred CHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC
Q 039757 323 RLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 375 (415)
-.++...++..+....|+. ..|-.+++.....|.++.++.+|++++..|..+.
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPi 174 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPI 174 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChH
Confidence 3456667777666665554 3677777777778888888888888887776643
No 493
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.39 E-value=1.2e+02 Score=26.53 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=12.9
Q ss_pred CChhHHHHHHHHHHhccCCCCc
Q 039757 163 RNVVSWTGILDGYTRMNRSNGA 184 (415)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~~a 184 (415)
-|+..|..++.+|.-.|+...+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHH
Confidence 4555666666666666654444
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.07 E-value=2e+02 Score=23.48 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHH
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (415)
....+.++..+...||++.|-++|--+.+ ..++. =...|..-+..+.+.+.-....+.++.|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR--~~~VD------iR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIR--CPEVD------IRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHc--CCCCC------hHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 34577889999999999999999999983 22222 1234666666666666544444444444
No 495
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=37.85 E-value=3.8e+02 Score=25.84 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
.+.-.+-.++..|.+.+++.+-++... ....|..+...+...+...++..-+-+
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~--------------------------~~~~yl~~v~llle~~~~~~a~~wl~~ 358 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAE--------------------------GPGSYLDLVELLLESGEPSKAELWLAR 358 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhc--------------------------CcccHHHHHHHHHhcCChhHHHHHHHH
Confidence 344455566666666666666655532 122355555566666666666554444
Q ss_pred hhhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHH--HHccCchHH
Q 039757 216 GEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG--FAMHGMGKA 277 (415)
Q Consensus 216 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~ 277 (415)
-.+.+-. -........+...+...|++-.|.++-+..-..+|+...|--|=.+ +...|+.+.
T Consensus 359 ~~r~a~~q~~t~q~~q~l~el~~~~g~~~~a~~Laq~~F~r~p~~~sy~~lw~~~~~~gi~~~e~ 423 (587)
T COG4715 359 GIRTAREQLQTTQLPQTLAELKEEEGRLGFAAELAQEAFFRTPNGRSYLGLWLAAVYAGIGREER 423 (587)
T ss_pred HHhhhhHhhhhhhhHHHHHHHHHhhcchHHHHHHHHHHccCCCCccchhhHHHHHHHhhhchHHH
Confidence 3333211 1144556678889999999999999988887777888877766544 333444443
No 496
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.70 E-value=3.1e+02 Score=26.38 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=60.4
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH---HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc----------
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV---VRRILLGACSFHGNVEMGERVTRKVLEMERGNGG---------- 376 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------- 376 (415)
....|+.-|.+.+++++|..++..|.-..-... ..+.++..+.+..--.+.+..++.++.....+..
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 445688899999999999999999976611222 4455556666665456666667776665532111
Q ss_pred ------cHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 377 ------DYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 377 ------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.-......+.|.+++++|..+--++.+.
T Consensus 490 ~d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~ 523 (545)
T PF11768_consen 490 RDPVSDLARRFFHHLLRYQRFEKAFLLAVDIGDR 523 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccch
Confidence 1112334456788888888776555443
No 497
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.34 E-value=1.3e+02 Score=21.64 Aligned_cols=49 Identities=6% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhH
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 121 (415)
.++..+...+.+-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3555666666777899999999888766666665556777888876543
No 498
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=37.26 E-value=60 Score=28.31 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=33.7
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCcc
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (415)
..+.|+.++|..+|+......| ++.....+.......++.-+|..++-+++...|.+..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3466777777777765544423 23344444444444556666666666666666655543
No 499
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.16 E-value=2.5e+02 Score=23.62 Aligned_cols=60 Identities=10% Similarity=-0.044 Sum_probs=41.4
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhh
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK-CGCIFSALKLFEDISVE 255 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~ 255 (415)
-+.....+.++++++...++++...+... +..-.+.|..+|-. .|....+++++..+...
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eL-t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPEL-TEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 34556678899999999999999886443 66666767666643 35666777777776655
No 500
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=36.83 E-value=3.9e+02 Score=26.93 Aligned_cols=92 Identities=11% Similarity=-0.009 Sum_probs=57.9
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCC-C-------CCCCchhHHHHHH
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPL-R-------PLFDSFTYSFLIR 76 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-p-------~~~~~~~~~~l~~ 76 (415)
.........++.+..++.-+......+++.. .|+...|+.+++++. ..|-..+ . ...+......++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqai---a~g~g~It~e~V~~lLG~~d~~~If~Lld 254 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAI---ALGSGKVAENDVRQMIGAVDKQYLYELLT 254 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHH---HhcCCCcCHHHHHHHHcccCHHHHHHHHH
Confidence 3444555556666666777777777777655 699999999998876 3221100 0 0002233444555
Q ss_pred HHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 77 TCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
++. .++...+..+++.+...|+.+.
T Consensus 255 AL~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 255 GII-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 444 4788899999999998887654
Done!